AMF_RS06055 3030401c98134442baecbbb494e10549 380 Gene3D G3DSA:3.90.1150.10 266 366 5.1E-16 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS06055 3030401c98134442baecbbb494e10549 380 Pfam PF00155 Aminotransferase class I and II 45 364 5.0E-49 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMF_RS06055 3030401c98134442baecbbb494e10549 380 SUPERFAMILY SSF53383 28 366 3.63E-89 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMF_RS06055 3030401c98134442baecbbb494e10549 380 Gene3D G3DSA:3.40.640.10 62 265 1.3E-77 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMF_RS06055 3030401c98134442baecbbb494e10549 380 PANTHER PTHR13693 6 366 1.3E-129 T 19-04-2016 AMF_RS06055 3030401c98134442baecbbb494e10549 380 PANTHER PTHR13693:SF53 6 366 1.3E-129 T 19-04-2016 AMF_RS09145 8909768d452ae2b6a44c3140ff88141d 186 SUPERFAMILY SSF111384 34 175 2.75E-19 T 19-04-2016 IPR024930 Skp domain AMF_RS09145 8909768d452ae2b6a44c3140ff88141d 186 SMART SM00935 15 175 1.2E-27 T 19-04-2016 IPR005632 Chaperone protein Skp GO:0051082 AMF_RS09145 8909768d452ae2b6a44c3140ff88141d 186 Pfam PF03938 Outer membrane protein (OmpH-like) 16 174 1.4E-21 T 19-04-2016 IPR005632 Chaperone protein Skp GO:0051082 AMF_RS09145 8909768d452ae2b6a44c3140ff88141d 186 Gene3D G3DSA:3.30.910.20 32 175 6.5E-9 T 19-04-2016 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 Gene3D G3DSA:3.30.230.10 291 446 5.3E-24 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 Pfam PF06745 KaiC 75 140 3.7E-9 T 19-04-2016 IPR014774 KaiC-like domain AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 SUPERFAMILY SSF52540 65 283 6.46E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 PANTHER PTHR32472 5 447 7.8E-155 T 19-04-2016 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 SMART SM00382 87 241 7.8E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 Gene3D G3DSA:3.40.50.300 65 271 3.3E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 SUPERFAMILY SSF54211 252 266 2.35E-33 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 SUPERFAMILY SSF54211 301 447 2.35E-33 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 Pfam PF13541 Subunit ChlI of Mg-chelatase 339 426 2.0E-8 T 19-04-2016 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 PRINTS PR01874 DNA repair protein radA signature 320 343 1.8E-85 T 19-04-2016 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 PRINTS PR01874 DNA repair protein radA signature 210 238 1.8E-85 T 19-04-2016 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 PRINTS PR01874 DNA repair protein radA signature 11 35 1.8E-85 T 19-04-2016 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 PRINTS PR01874 DNA repair protein radA signature 121 138 1.8E-85 T 19-04-2016 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 PRINTS PR01874 DNA repair protein radA signature 79 107 1.8E-85 T 19-04-2016 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 PRINTS PR01874 DNA repair protein radA signature 245 271 1.8E-85 T 19-04-2016 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 PRINTS PR01874 DNA repair protein radA signature 171 195 1.8E-85 T 19-04-2016 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 TIGRFAM TIGR00416 sms: DNA repair protein RadA 5 445 1.0E-154 T 19-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMF_RS05650 01f9fc8c0df4731228d9920e4191f739 452 PANTHER PTHR32472:SF10 5 447 7.8E-155 T 19-04-2016 AMF_RS06915 ed06e07ff60351f23008552202379f63 465 Gene3D G3DSA:3.40.1190.20 206 457 1.4E-65 T 19-04-2016 IPR029056 Ribokinase-like AMF_RS06915 ed06e07ff60351f23008552202379f63 465 Pfam PF03853 YjeF-related protein N-terminus 22 166 2.1E-31 T 19-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMF_RS06915 ed06e07ff60351f23008552202379f63 465 Gene3D G3DSA:3.40.50.10260 4 205 1.0E-52 T 19-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMF_RS06915 ed06e07ff60351f23008552202379f63 465 PANTHER PTHR12592:SF0 3 465 2.2E-85 T 19-04-2016 AMF_RS06915 ed06e07ff60351f23008552202379f63 465 SUPERFAMILY SSF64153 5 219 4.84E-52 T 19-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMF_RS06915 ed06e07ff60351f23008552202379f63 465 PANTHER PTHR12592 3 465 2.2E-85 T 19-04-2016 AMF_RS06915 ed06e07ff60351f23008552202379f63 465 Pfam PF01256 Carbohydrate kinase 231 440 3.8E-42 T 19-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 AMF_RS06915 ed06e07ff60351f23008552202379f63 465 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 204 457 1.2E-45 T 19-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 AMF_RS06915 ed06e07ff60351f23008552202379f63 465 SUPERFAMILY SSF53613 195 457 5.34E-55 T 19-04-2016 IPR029056 Ribokinase-like AMF_RS06915 ed06e07ff60351f23008552202379f63 465 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 2 188 22.193 T 19-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMF_RS06915 ed06e07ff60351f23008552202379f63 465 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 198 462 16.529 T 19-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 SMART SM00878 336 443 2.1E-51 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.7E-42 T 19-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 SUPERFAMILY SSF52440 1 113 6.26E-47 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 Gene3D G3DSA:3.30.470.20 205 446 5.2E-94 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 612 629 - T 19-04-2016 IPR001882 Biotin-binding site AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 SUPERFAMILY SSF51246 331 446 6.28E-38 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 Gene3D G3DSA:2.40.50.100 585 655 1.6E-19 T 19-04-2016 AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 SUPERFAMILY SSF56059 83 348 5.13E-69 T 19-04-2016 AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 Gene3D G3DSA:3.40.50.20 1 128 5.0E-47 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 SUPERFAMILY SSF51230 583 654 3.14E-18 T 19-04-2016 IPR011053 Single hybrid motif AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 9.9E-75 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 Pfam PF00364 Biotin-requiring enzyme 593 654 2.4E-14 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 Gene3D G3DSA:3.30.1490.20 129 202 4.0E-29 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 Pfam PF02785 Biotin carboxylase C-terminal domain 336 443 2.2E-36 T 19-04-2016 IPR005482 Biotin carboxylase, C-terminal AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 PANTHER PTHR18866 576 655 7.1E-303 T 19-04-2016 AMF_RS08100 9728164c330b39dbb3bc47807d137dcc 659 PANTHER PTHR18866 1 540 7.1E-303 T 19-04-2016 AMF_RS08620 d2d9c53db4a40e48bf842823c13871c9 216 SUPERFAMILY SSF102645 3 212 7.19E-57 T 19-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 AMF_RS08620 d2d9c53db4a40e48bf842823c13871c9 216 PANTHER PTHR14359:SF20 2 212 1.2E-52 T 19-04-2016 AMF_RS08620 d2d9c53db4a40e48bf842823c13871c9 216 Gene3D G3DSA:3.40.50.10300 2 211 1.2E-60 T 19-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 AMF_RS08620 d2d9c53db4a40e48bf842823c13871c9 216 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 2 181 2.1E-51 T 19-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 AMF_RS08620 d2d9c53db4a40e48bf842823c13871c9 216 PANTHER PTHR14359 2 212 1.2E-52 T 19-04-2016 AMF_RS05495 f10e3ba38252e638921218a7193f0d38 421 PANTHER PTHR11851 5 421 7.2E-125 T 19-04-2016 AMF_RS05495 f10e3ba38252e638921218a7193f0d38 421 Gene3D G3DSA:3.30.830.10 16 223 6.5E-52 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMF_RS05495 f10e3ba38252e638921218a7193f0d38 421 SUPERFAMILY SSF63411 221 414 3.67E-43 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_RS05495 f10e3ba38252e638921218a7193f0d38 421 Gene3D G3DSA:3.30.830.10 224 415 5.3E-54 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMF_RS05495 f10e3ba38252e638921218a7193f0d38 421 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 36 59 - T 19-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMF_RS05495 f10e3ba38252e638921218a7193f0d38 421 SUPERFAMILY SSF63411 7 205 1.48E-53 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_RS05495 f10e3ba38252e638921218a7193f0d38 421 Pfam PF05193 Peptidase M16 inactive domain 169 339 1.5E-39 T 19-04-2016 IPR007863 Peptidase M16, C-terminal AMF_RS05495 f10e3ba38252e638921218a7193f0d38 421 Pfam PF00675 Insulinase (Peptidase family M16) 16 161 1.8E-37 T 19-04-2016 IPR011765 Peptidase M16, N-terminal AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 Gene3D G3DSA:1.20.120.640 312 399 3.7E-14 T 19-04-2016 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 464 36.894 T 19-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 SUPERFAMILY SSF52374 2 317 6.7E-90 T 19-04-2016 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 SUPERFAMILY SSF47323 321 463 5.23E-24 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 PANTHER PTHR10890 2 462 6.5E-181 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 224 245 3.7E-28 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 24 35 3.7E-28 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 193 211 3.7E-28 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 60 69 3.7E-28 T 19-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 SMART SM00840 348 407 7.8E-14 T 19-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 1 464 2.5E-143 T 19-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 318 3.9E-112 T 19-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 Pfam PF09190 DALR domain 349 406 2.9E-13 T 19-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AMF_RS06840 795ee992a5817f81ba611d6c1b2fd742 466 Gene3D G3DSA:3.40.50.620 17 309 2.7E-96 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF00575 S1 RNA binding domain 623 693 1.4E-16 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Gene3D G3DSA:3.30.1370.10 557 621 1.3E-21 T 19-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF55666 455 553 1.31E-25 T 19-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 695 3.6E-289 T 19-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF54211 306 473 4.71E-45 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 PIRSF PIRSF005499 1 723 3.5E-266 T 19-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Gene3D G3DSA:3.30.230.70 3 225 1.0E-71 T 19-04-2016 IPR027408 PNPase/RNase PH domain AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Gene3D G3DSA:3.30.230.70 321 548 4.8E-80 T 19-04-2016 IPR027408 PNPase/RNase PH domain AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF54211 2 143 8.6E-44 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Gene3D G3DSA:2.40.50.140 622 699 2.5E-21 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF55666 137 229 9.82E-23 T 19-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 697 28.401 T 19-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 SMART SM00316 625 694 4.0E-17 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF03725 3' exoribonuclease family, domain 2 147 211 2.7E-11 T 19-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF00013 KH domain 562 618 3.7E-12 T 19-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 SMART SM00322 557 622 1.3E-13 T 19-04-2016 IPR004087 K Homology domain GO:0003676 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF01138 3' exoribonuclease family, domain 1 14 143 5.4E-18 T 19-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF01138 3' exoribonuclease family, domain 1 328 461 1.6E-21 T 19-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF50249 625 702 2.5E-18 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 285 324 2.0E-4 T 19-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 SUPERFAMILY SSF54791 560 644 2.77E-20 T 19-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 Gene3D G3DSA:1.10.10.400 282 320 8.4E-8 T 19-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 PANTHER PTHR11252:SF0 9 699 0.0 T 19-04-2016 AMF_RS07020 a03f82163e94cc8617ad669d96a8e566 805 PANTHER PTHR11252 9 699 0.0 T 19-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMF_RS05310 55632389c7da8117f25d08774a37fc0c 346 Gene3D G3DSA:3.40.190.10 131 277 1.3E-49 T 19-04-2016 AMF_RS05310 55632389c7da8117f25d08774a37fc0c 346 Gene3D G3DSA:3.40.190.10 278 310 6.2E-28 T 19-04-2016 AMF_RS05310 55632389c7da8117f25d08774a37fc0c 346 Gene3D G3DSA:3.40.190.10 6 127 6.2E-28 T 19-04-2016 AMF_RS05310 55632389c7da8117f25d08774a37fc0c 346 SUPERFAMILY SSF53850 30 346 4.73E-73 T 19-04-2016 AMF_RS05310 55632389c7da8117f25d08774a37fc0c 346 PIRSF PIRSF002825 3 346 1.4E-84 T 19-04-2016 IPR026045 Ferric binding protein AMF_RS05310 55632389c7da8117f25d08774a37fc0c 346 PANTHER PTHR30006:SF4 17 342 9.2E-114 T 19-04-2016 AMF_RS05310 55632389c7da8117f25d08774a37fc0c 346 PANTHER PTHR30006 17 342 9.2E-114 T 19-04-2016 AMF_RS05310 55632389c7da8117f25d08774a37fc0c 346 Pfam PF13343 Bacterial extracellular solute-binding protein 80 304 3.7E-20 T 19-04-2016 AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 PANTHER PTHR23105:SF5 9 213 7.0E-64 T 19-04-2016 AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 PANTHER PTHR23105 9 213 7.0E-64 T 19-04-2016 AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 8 213 3.3E-77 T 19-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 PIRSF PIRSF002155 2 216 1.9E-68 T 19-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 SUPERFAMILY SSF56808 6 213 3.66E-70 T 19-04-2016 IPR023674 Ribosomal protein L1-like AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 5 216 33.205 T 19-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 ProSitePatterns PS01199 Ribosomal protein L1 signature. 110 128 - T 19-04-2016 IPR023673 Ribosomal protein L1, conserved site AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 Gene3D G3DSA:3.40.50.790 57 148 4.1E-36 T 19-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 Pfam PF00687 Ribosomal protein L1p/L10e family 18 208 1.1E-44 T 19-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 Gene3D G3DSA:3.30.190.20 8 56 2.3E-34 T 19-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 AMF_RS06010 b58375ae9e1948b7771bba5a0bc21cb2 217 Gene3D G3DSA:3.30.190.20 150 213 2.3E-34 T 19-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 Gene3D G3DSA:3.40.50.300 141 286 3.5E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 Pfam PF01926 50S ribosome-binding GTPase 141 260 2.2E-24 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 1 296 3.3E-117 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 Pfam PF01018 GTP1/OBG 1 138 1.9E-46 T 19-04-2016 IPR006169 GTP1/OBG domain GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 PANTHER PTHR11702 1 288 1.1E-114 T 19-04-2016 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 163 181 5.8E-33 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 142 162 5.8E-33 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 190 205 5.8E-33 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 207 225 5.8E-33 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 SUPERFAMILY SSF52540 141 288 2.74E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 PANTHER PTHR11702:SF3 1 288 1.1E-114 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 Hamap MF_01454 GTPase Obg [obg]. 1 305 37.556 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 ProSitePatterns PS00905 GTP1/OBG family signature. 192 205 - T 19-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 PIRSF PIRSF002401 1 317 4.3E-112 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 SUPERFAMILY SSF82051 1 138 6.41E-44 T 19-04-2016 IPR006169 GTP1/OBG domain GO:0005525 AMF_RS08220 ab1851da3f3330ecc92788e53c20942b 328 Gene3D G3DSA:2.70.210.12 1 135 1.2E-43 T 19-04-2016 IPR006169 GTP1/OBG domain GO:0005525 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 PANTHER PTHR11458 1 325 2.7E-138 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 SMART SM01004 3 324 3.0E-189 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 298 317 1.1E-47 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 243 259 1.1E-47 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 121 135 1.1E-47 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 268 283 1.1E-47 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 151 170 1.1E-47 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 189 208 1.1E-47 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 PIRSF PIRSF001415 1 327 8.8E-127 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 Pfam PF00490 Delta-aminolevulinic acid dehydratase 6 322 8.6E-123 T 19-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 Gene3D G3DSA:3.20.20.70 2 325 5.0E-128 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS06610 d0f7d478d58927efe143b75e0ae49ff1 327 SUPERFAMILY SSF51569 3 325 1.01E-122 T 19-04-2016 AMF_RS05875 aed98292c81f84ad2d782911873efe8c 275 Pfam PF00120 Glutamine synthetase, catalytic domain 58 268 9.8E-40 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_RS05875 aed98292c81f84ad2d782911873efe8c 275 SUPERFAMILY SSF55931 7 268 1.67E-56 T 19-04-2016 AMF_RS05875 aed98292c81f84ad2d782911873efe8c 275 PANTHER PTHR20852:SF35 88 269 2.6E-32 T 19-04-2016 AMF_RS05875 aed98292c81f84ad2d782911873efe8c 275 PANTHER PTHR20852 88 269 2.6E-32 T 19-04-2016 AMF_RS05875 aed98292c81f84ad2d782911873efe8c 275 SMART SM01230 1 229 3.6E-28 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_RS05875 aed98292c81f84ad2d782911873efe8c 275 Gene3D G3DSA:3.30.590.10 58 270 2.2E-47 T 19-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 8 320 2.5E-95 T 19-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 Gene3D G3DSA:3.40.140.10 3 130 1.9E-30 T 19-04-2016 AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 101 9.5E-18 T 19-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 90 - T 19-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 Gene3D G3DSA:3.40.430.10 131 351 6.8E-55 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 PIRSF PIRSF006769 1 358 1.1E-130 T 19-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 PANTHER PTHR11079 3 223 1.3E-53 T 19-04-2016 AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 Pfam PF01872 RibD C-terminal domain 149 349 6.6E-35 T 19-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 SUPERFAMILY SSF53927 4 146 4.42E-43 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 SUPERFAMILY SSF53597 147 351 6.81E-47 T 19-04-2016 IPR024072 Dihydrofolate reductase-like domain AMF_RS05130 18ea3ec4c0a9e55b8e15fa84bf1b67aa 371 PANTHER PTHR11079:SF10 3 223 1.3E-53 T 19-04-2016 AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 SMART SM00490 432 527 2.7E-12 T 19-04-2016 IPR001650 Helicase, C-terminal AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 Hamap MF_00983 Probable primosomal protein N' [priA]. 9 661 22.025 T 19-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 Pfam PF00271 Helicase conserved C-terminal domain 442 526 2.2E-8 T 19-04-2016 IPR001650 Helicase, C-terminal AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 PANTHER PTHR30580 1 662 8.3E-191 T 19-04-2016 AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 Gene3D G3DSA:3.40.50.300 131 320 4.8E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 SUPERFAMILY SSF52540 149 379 3.68E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 SUPERFAMILY SSF52540 443 537 3.68E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 TIGRFAM TIGR00595 priA: primosomal protein N' 157 659 1.8E-173 T 19-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 Gene3D G3DSA:3.40.50.300 346 367 7.5E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 Gene3D G3DSA:3.40.50.300 429 570 7.5E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 Pfam PF00270 DEAD/DEAH box helicase 154 302 1.2E-16 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMF_RS08115 71525757c1fd55b212c69d8fee14a169 662 SMART SM00487 130 330 3.6E-22 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMF_RS09315 63c47ea1cd7187070b0400fea516257f 297 SUPERFAMILY SSF56925 120 145 9.16E-9 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09315 63c47ea1cd7187070b0400fea516257f 297 SUPERFAMILY SSF56925 173 286 9.16E-9 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09315 63c47ea1cd7187070b0400fea516257f 297 Gene3D G3DSA:2.40.160.20 115 286 3.1E-6 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09315 63c47ea1cd7187070b0400fea516257f 297 Pfam PF01617 Surface antigen 38 295 6.3E-30 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS09285 a6a3b847d938f707ab14ef1b61fad974 586 SUPERFAMILY SSF64182 71 465 1.83E-107 T 19-04-2016 AMF_RS09285 a6a3b847d938f707ab14ef1b61fad974 586 PANTHER PTHR30255:SF2 17 584 5.1E-172 T 19-04-2016 AMF_RS09285 a6a3b847d938f707ab14ef1b61fad974 586 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 43 582 4.5E-157 T 19-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 AMF_RS09285 a6a3b847d938f707ab14ef1b61fad974 586 PANTHER PTHR30255 17 584 5.1E-172 T 19-04-2016 AMF_RS09285 a6a3b847d938f707ab14ef1b61fad974 586 Pfam PF02272 DHHA1 domain 398 456 3.2E-8 T 19-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 AMF_RS09285 a6a3b847d938f707ab14ef1b61fad974 586 Pfam PF01368 DHH family 97 187 7.7E-8 T 19-04-2016 IPR001667 DDH domain AMF_RS06035 f6bf5a7fa535c6d2104bc4cfe5905e9e 243 Pfam PF01351 Ribonuclease HII 26 204 2.5E-41 T 19-04-2016 IPR024567 Ribonuclease HII/HIII domain AMF_RS06035 f6bf5a7fa535c6d2104bc4cfe5905e9e 243 SUPERFAMILY SSF53098 16 211 3.03E-63 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS06035 f6bf5a7fa535c6d2104bc4cfe5905e9e 243 Gene3D G3DSA:3.30.420.10 24 166 2.4E-43 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS06035 f6bf5a7fa535c6d2104bc4cfe5905e9e 243 PANTHER PTHR10954:SF7 12 208 8.0E-63 T 19-04-2016 AMF_RS06035 f6bf5a7fa535c6d2104bc4cfe5905e9e 243 Hamap MF_00052_B Ribonuclease HII [rnhB]. 24 205 34.587 T 19-04-2016 IPR022898 Ribonuclease HII GO:0004523 AMF_RS06035 f6bf5a7fa535c6d2104bc4cfe5905e9e 243 PANTHER PTHR10954 12 208 8.0E-63 T 19-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 Gene3D G3DSA:1.25.60.10 26 146 2.8E-15 T 19-04-2016 AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 Pfam PF03448 MgtE intracellular N domain 55 153 5.0E-17 T 19-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 SMART SM00924 52 155 3.6E-24 T 19-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 PANTHER PTHR41394 26 463 7.2E-26 T 19-04-2016 AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 SMART SM00116 226 274 5.4E-7 T 19-04-2016 IPR000644 CBS domain AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 SMART SM00116 162 215 13.0 T 19-04-2016 IPR000644 CBS domain AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 Gene3D G3DSA:1.10.357.20 295 463 7.2E-44 T 19-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 TIGRFAM TIGR00400 mgtE: magnesium transporter 37 463 3.5E-80 T 19-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 Pfam PF00571 CBS domain 157 213 0.006 T 19-04-2016 IPR000644 CBS domain AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 Pfam PF00571 CBS domain 219 273 1.5E-7 T 19-04-2016 IPR000644 CBS domain AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 Pfam PF01769 Divalent cation transporter 338 460 1.0E-21 T 19-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 SUPERFAMILY SSF54631 155 287 1.77E-23 T 19-04-2016 AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 Gene3D G3DSA:3.10.580.10 147 280 5.3E-20 T 19-04-2016 AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 SUPERFAMILY SSF158791 27 152 3.79E-20 T 19-04-2016 AMF_RS07575 4fadb0e20419ef5a325a53d6e362f059 465 SUPERFAMILY SSF161093 295 464 8.11E-42 T 19-04-2016 AMF_RS07555 907cb693df4003ba96657b6cae5400ba 219 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 2 211 2.7E-76 T 19-04-2016 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 AMF_RS07555 907cb693df4003ba96657b6cae5400ba 219 PANTHER PTHR10683 2 210 2.6E-69 T 19-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 AMF_RS07555 907cb693df4003ba96657b6cae5400ba 219 Pfam PF00923 Transaldolase 3 201 1.6E-51 T 19-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 AMF_RS07555 907cb693df4003ba96657b6cae5400ba 219 Gene3D G3DSA:3.20.20.70 2 212 4.8E-63 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS07555 907cb693df4003ba96657b6cae5400ba 219 SUPERFAMILY SSF51569 2 212 6.91E-69 T 19-04-2016 AMF_RS07555 907cb693df4003ba96657b6cae5400ba 219 ProSitePatterns PS00958 Transaldolase active site. 80 97 - T 19-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 Gene3D G3DSA:3.30.930.10 6 244 1.5E-106 T 19-04-2016 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 PANTHER PTHR11777 1 881 0.0 T 19-04-2016 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 666 708 1.1E-19 T 19-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 Pfam PF02272 DHHA1 domain 808 872 1.7E-5 T 19-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 880 152.446 T 19-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 SUPERFAMILY SSF55186 564 717 1.02E-45 T 19-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 Pfam PF01411 tRNA synthetases class II (A) 9 567 6.0E-196 T 19-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 SUPERFAMILY SSF101353 249 451 1.44E-49 T 19-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 9 856 3.7E-248 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 PANTHER PTHR11777:SF9 1 881 0.0 T 19-04-2016 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 SUPERFAMILY SSF55681 6 248 5.72E-101 T 19-04-2016 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 298 311 4.9E-29 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 274 290 4.9E-29 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 78 89 4.9E-29 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 202 213 4.9E-29 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 229 242 4.9E-29 T 19-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 SMART SM00863 666 708 2.5E-22 T 19-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AMF_RS05885 56d2919aed7fe60e09d5200947550383 882 SUPERFAMILY SSF50447 458 564 5.3E-15 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 212 2.3E-70 T 19-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 Gene3D G3DSA:3.40.190.10 5 110 2.9E-40 T 19-04-2016 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 Gene3D G3DSA:3.40.190.10 111 199 2.4E-35 T 19-04-2016 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 19-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 1.7E-37 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 1.7E-37 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 1.7E-37 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 1.7E-37 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 1.7E-37 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 PANTHER PTHR11557 5 297 2.1E-116 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 SUPERFAMILY SSF54782 220 297 2.09E-16 T 19-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 PIRSF PIRSF001438 1 301 4.0E-105 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 294 4.7E-109 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 295 8.7E-11 T 19-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 34.63 T 19-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 SUPERFAMILY SSF53850 6 218 2.17E-76 T 19-04-2016 AMF_RS07680 aab8f1ea83ee6bed261a732c48d51bef 303 Gene3D G3DSA:3.30.160.40 221 296 1.1E-11 T 19-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS09640 2b81c1b7d0b7b4a4d6845d2b03671bd2 96 Pfam PF01649 Ribosomal protein S20 2 85 7.7E-23 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09640 2b81c1b7d0b7b4a4d6845d2b03671bd2 96 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 35 93 4.0E-12 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09640 2b81c1b7d0b7b4a4d6845d2b03671bd2 96 Gene3D G3DSA:1.20.58.110 1 87 3.5E-25 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09640 2b81c1b7d0b7b4a4d6845d2b03671bd2 96 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 86 14.711 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09640 2b81c1b7d0b7b4a4d6845d2b03671bd2 96 PANTHER PTHR33398 1 92 9.5E-20 T 19-04-2016 AMF_RS09640 2b81c1b7d0b7b4a4d6845d2b03671bd2 96 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 6.1E-17 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09640 2b81c1b7d0b7b4a4d6845d2b03671bd2 96 SUPERFAMILY SSF46992 3 87 2.88E-23 T 19-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09980 58c0235a973d51a5c06f929a09443b45 265 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 265 26.555 T 19-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS09980 58c0235a973d51a5c06f929a09443b45 265 SUPERFAMILY SSF54506 1 125 3.59E-29 T 19-04-2016 AMF_RS09980 58c0235a973d51a5c06f929a09443b45 265 Gene3D G3DSA:3.10.310.10 1 116 7.1E-30 T 19-04-2016 AMF_RS09980 58c0235a973d51a5c06f929a09443b45 265 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 2 259 4.6E-65 T 19-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS09980 58c0235a973d51a5c06f929a09443b45 265 PANTHER PTHR31689 1 265 2.1E-71 T 19-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS09980 58c0235a973d51a5c06f929a09443b45 265 SUPERFAMILY SSF54506 142 258 8.37E-38 T 19-04-2016 AMF_RS09980 58c0235a973d51a5c06f929a09443b45 265 Gene3D G3DSA:3.10.310.10 117 251 1.7E-42 T 19-04-2016 AMF_RS09980 58c0235a973d51a5c06f929a09443b45 265 Pfam PF01678 Diaminopimelate epimerase 147 253 1.4E-23 T 19-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS09980 58c0235a973d51a5c06f929a09443b45 265 Pfam PF01678 Diaminopimelate epimerase 3 117 2.9E-14 T 19-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PANTHER PTHR22912 1 463 7.2E-173 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 351 459 1.5E-31 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 SUPERFAMILY SSF55424 349 467 1.27E-36 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 5.1E-66 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 5.1E-66 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 434 454 5.1E-66 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 5.1E-66 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 173 198 5.1E-66 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 5.1E-66 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 347 368 5.1E-66 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 5.1E-66 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 412 427 5.1E-66 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.7E-37 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 1.7E-37 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 191 1.7E-37 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 1.7E-37 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 136 154 1.7E-37 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 Gene3D G3DSA:3.50.50.60 2 140 8.5E-40 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 325 6.6E-65 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 Gene3D G3DSA:3.50.50.60 141 333 1.6E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 468 3.6E-154 T 19-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PANTHER PTHR22912:SF125 1 463 7.2E-173 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 PIRSF PIRSF000350 1 464 5.6E-80 T 19-04-2016 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 19-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 Gene3D G3DSA:3.30.390.30 340 466 7.6E-40 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMF_RS05845 662aa8becd7b75145f49564ccd6ee4f6 470 SUPERFAMILY SSF51905 1 334 2.04E-62 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 300 322 9.7E-40 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 9.7E-40 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 182 200 9.7E-40 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 288 9.7E-40 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 9.7E-40 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 437 457 1.3E-70 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 182 207 1.3E-70 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 350 371 1.3E-70 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 287 1.3E-70 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 1.3E-70 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 315 322 1.3E-70 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 415 430 1.3E-70 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 1.3E-70 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.3E-70 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 Gene3D G3DSA:3.50.50.60 5 147 5.6E-34 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 SUPERFAMILY SSF51905 140 345 2.99E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 SUPERFAMILY SSF51905 4 106 2.99E-57 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 Gene3D G3DSA:3.30.390.30 342 466 8.7E-41 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 335 2.8E-59 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PANTHER PTHR22912 5 122 7.3E-181 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PANTHER PTHR22912 142 466 7.3E-181 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 SUPERFAMILY SSF55424 350 466 1.89E-35 T 19-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 462 4.0E-30 T 19-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 6 468 1.6E-140 T 19-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 19-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 Gene3D G3DSA:3.50.50.60 148 341 6.1E-50 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PANTHER PTHR22912:SF151 5 122 7.3E-181 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PANTHER PTHR22912:SF151 142 466 7.3E-181 T 19-04-2016 AMF_RS07990 ce7dcbe100674487968ca41a67eca4d4 471 PIRSF PIRSF000350 2 450 6.2E-69 T 19-04-2016 AMF_RS07130 0a519bb61c847ffb14ca349eb2a98585 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 272 - T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_RS07130 0a519bb61c847ffb14ca349eb2a98585 427 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 11 416 5.2E-143 T 19-04-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 AMF_RS07130 0a519bb61c847ffb14ca349eb2a98585 427 SUPERFAMILY SSF53383 7 414 1.75E-113 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMF_RS07130 0a519bb61c847ffb14ca349eb2a98585 427 Gene3D G3DSA:3.40.640.10 60 321 2.2E-82 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMF_RS07130 0a519bb61c847ffb14ca349eb2a98585 427 PANTHER PTHR11986 9 424 1.6E-160 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_RS07130 0a519bb61c847ffb14ca349eb2a98585 427 Pfam PF00202 Aminotransferase class-III 25 412 5.2E-109 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_RS07130 0a519bb61c847ffb14ca349eb2a98585 427 PIRSF PIRSF000521 24 419 3.3E-32 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_RS07130 0a519bb61c847ffb14ca349eb2a98585 427 Gene3D G3DSA:3.90.1150.10 9 59 1.2E-41 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS07130 0a519bb61c847ffb14ca349eb2a98585 427 Gene3D G3DSA:3.90.1150.10 324 418 1.2E-41 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS07130 0a519bb61c847ffb14ca349eb2a98585 427 PANTHER PTHR11986:SF8 9 424 1.6E-160 T 19-04-2016 AMF_RS09925 6a363eb0ab257bf70341f94a4974c181 323 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 12 322 6.6E-91 T 19-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMF_RS09925 6a363eb0ab257bf70341f94a4974c181 323 SUPERFAMILY SSF48179 181 322 1.51E-48 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMF_RS09925 6a363eb0ab257bf70341f94a4974c181 323 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 12 170 5.2E-52 T 19-04-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMF_RS09925 6a363eb0ab257bf70341f94a4974c181 323 PANTHER PTHR21371 15 321 2.3E-94 T 19-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMF_RS09925 6a363eb0ab257bf70341f94a4974c181 323 SUPERFAMILY SSF51735 6 170 2.12E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS09925 6a363eb0ab257bf70341f94a4974c181 323 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 181 322 4.2E-44 T 19-04-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 AMF_RS09925 6a363eb0ab257bf70341f94a4974c181 323 Gene3D G3DSA:1.10.1040.10 27 321 4.4E-76 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMF_RS05975 26594be140311a1b0d8f5357bc0199bb 160 PANTHER PTHR11205 1 160 4.0E-56 T 19-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 AMF_RS05975 26594be140311a1b0d8f5357bc0199bb 160 Gene3D G3DSA:1.10.455.10 19 160 1.1E-51 T 19-04-2016 IPR023798 Ribosomal protein S7 domain AMF_RS05975 26594be140311a1b0d8f5357bc0199bb 160 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 159 3.0E-52 T 19-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMF_RS05975 26594be140311a1b0d8f5357bc0199bb 160 Pfam PF00177 Ribosomal protein S7p/S5e 1 153 5.8E-52 T 19-04-2016 IPR023798 Ribosomal protein S7 domain AMF_RS05975 26594be140311a1b0d8f5357bc0199bb 160 SUPERFAMILY SSF47973 1 153 4.19E-49 T 19-04-2016 IPR023798 Ribosomal protein S7 domain AMF_RS05975 26594be140311a1b0d8f5357bc0199bb 160 PIRSF PIRSF002122 12 160 7.7E-48 T 19-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 AMF_RS05975 26594be140311a1b0d8f5357bc0199bb 160 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 160 30.254 T 19-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 Gene3D G3DSA:1.10.1040.10 219 366 1.7E-35 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 91 118 2.6E-27 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 208 232 2.6E-27 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 233 257 2.6E-27 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 41 58 2.6E-27 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 275 292 2.6E-27 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 168 188 2.6E-27 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 SUPERFAMILY SSF51735 38 215 3.94E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 38 192 4.0E-39 T 19-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 PANTHER PTHR11728:SF1 36 362 1.3E-79 T 19-04-2016 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 SUPERFAMILY SSF48179 215 368 2.72E-36 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 PIRSF PIRSF000114 32 368 4.5E-85 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 37 359 28.282 T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 Gene3D G3DSA:3.40.50.720 38 218 4.2E-45 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 223 244 - T 19-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 215 356 2.4E-34 T 19-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 AMF_RS08780 263dafa4450f95e436dd42fcef999db2 371 PANTHER PTHR11728 36 362 1.3E-79 T 19-04-2016 AMF_RS06730 fff0438beafe3eb99cee3be63008f946 140 Pfam PF03100 CcmE 3 128 5.4E-37 T 19-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 AMF_RS06730 fff0438beafe3eb99cee3be63008f946 140 SUPERFAMILY SSF82093 29 130 7.85E-32 T 19-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 AMF_RS06730 fff0438beafe3eb99cee3be63008f946 140 PANTHER PTHR34128 3 128 2.9E-35 T 19-04-2016 AMF_RS06730 fff0438beafe3eb99cee3be63008f946 140 Gene3D G3DSA:2.40.50.140 25 122 1.4E-29 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS06730 fff0438beafe3eb99cee3be63008f946 140 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 140 28.839 T 19-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SUPERFAMILY SSF56091 3 308 1.35E-98 T 19-04-2016 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:1.10.150.20 427 499 1.1E-20 T 19-04-2016 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 119 148 - T 19-04-2016 IPR018239 NAD-dependent DNA ligase, active site AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 309 3.0E-95 T 19-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 12 664 6.6E-206 T 19-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 314 389 3.0E-33 T 19-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 PANTHER PTHR23389 3 528 1.6E-151 T 19-04-2016 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SMART SM00292 594 671 2.3E-10 T 19-04-2016 IPR001357 BRCT domain AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Pfam PF12826 Helix-hairpin-helix motif 507 573 4.8E-8 T 19-04-2016 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Hamap MF_01588 DNA ligase [ligA]. 3 668 44.97 T 19-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 PIRSF PIRSF001604 1 673 7.7E-221 T 19-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SUPERFAMILY SSF47781 395 578 1.78E-43 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:3.30.1490.70 193 313 2.5E-37 T 19-04-2016 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SMART SM00532 4 440 2.6E-194 T 19-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 399 426 2.5E-10 T 19-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:1.10.150.20 502 579 1.3E-13 T 19-04-2016 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:2.40.50.140 314 382 2.1E-32 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SUPERFAMILY SSF50249 311 391 2.57E-27 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 SUPERFAMILY SSF52113 593 669 8.5E-17 T 19-04-2016 IPR001357 BRCT domain AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:3.40.50.10190 593 670 4.6E-21 T 19-04-2016 IPR001357 BRCT domain AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 598 664 6.2E-10 T 19-04-2016 IPR001357 BRCT domain AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 Gene3D G3DSA:1.10.287.610 3 65 4.5E-12 T 19-04-2016 AMF_RS05630 c4bd0b5e2d0ff4f2e4922145e6116a1f 673 PANTHER PTHR23389:SF9 3 528 1.6E-151 T 19-04-2016 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 9 449 26.319 T 19-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SMART SM00322 324 431 0.29 T 19-04-2016 IPR004087 K Homology domain GO:0003676 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SMART SM00322 250 323 0.32 T 19-04-2016 IPR004087 K Homology domain GO:0003676 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 12 359 5.9E-105 T 19-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF47794 376 435 1.11E-11 T 19-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF47794 449 511 1.35E-6 T 19-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Pfam PF14520 Helix-hairpin-helix domain 452 510 8.9E-9 T 19-04-2016 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Pfam PF08529 NusA N-terminal domain 11 144 2.8E-18 T 19-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 PANTHER PTHR22648 8 468 1.4E-118 T 19-04-2016 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SMART SM00316 153 220 1.6E-10 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:3.30.300.20 220 297 1.2E-33 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 385 434 1.6E-16 T 19-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:3.30.1480.10 9 144 1.8E-20 T 19-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF54814 299 361 1.44E-14 T 19-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF69705 9 145 1.22E-23 T 19-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Pfam PF13184 NusA-like KH domain 250 318 5.2E-28 T 19-04-2016 IPR025249 KH domain, NusA-like GO:0003723 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF50249 151 219 2.86E-15 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:3.30.300.20 299 363 6.8E-25 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 SUPERFAMILY SSF54814 222 297 2.55E-28 T 19-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:2.40.50.140 148 218 1.4E-20 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 PANTHER PTHR22648:SF0 8 468 1.4E-118 T 19-04-2016 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:1.10.150.20 377 436 2.4E-14 T 19-04-2016 AMF_RS07765 7dbd4b7515f7e78ad5e62edd9c0fc99d 515 Gene3D G3DSA:1.10.150.20 450 510 1.6E-8 T 19-04-2016 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 1 613 36.356 T 19-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 PRINTS PR00046 Major sigma-70 factor signature 406 419 2.8E-30 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 PRINTS PR00046 Major sigma-70 factor signature 591 602 2.8E-30 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 PRINTS PR00046 Major sigma-70 factor signature 576 591 2.8E-30 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 PRINTS PR00046 Major sigma-70 factor signature 554 566 2.8E-30 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 PRINTS PR00046 Major sigma-70 factor signature 430 438 2.8E-30 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 Gene3D G3DSA:1.10.10.10 545 615 6.1E-30 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 378 604 1.8E-39 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 576 602 - T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 Gene3D G3DSA:1.10.10.10 455 506 8.5E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 PANTHER PTHR30603:SF0 4 146 6.3E-190 T 19-04-2016 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 PANTHER PTHR30603:SF0 331 614 6.3E-190 T 19-04-2016 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 Pfam PF04545 Sigma-70, region 4 550 604 4.6E-19 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 Pfam PF00140 Sigma-70 factor, region 1.2 92 120 3.5E-9 T 19-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 Pfam PF04546 Sigma-70, non-essential region 134 350 1.2E-27 T 19-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 PANTHER PTHR30603 4 146 6.3E-190 T 19-04-2016 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 PANTHER PTHR30603 331 614 6.3E-190 T 19-04-2016 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 Pfam PF04539 Sigma-70 region 3 461 537 1.8E-23 T 19-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 378 614 1.2E-114 T 19-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 Pfam PF03979 Sigma-70 factor, region 1.1 3 79 1.3E-15 T 19-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 SUPERFAMILY SSF88659 455 528 4.1E-20 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 SUPERFAMILY SSF88659 513 612 1.79E-24 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 406 419 - T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 Pfam PF04542 Sigma-70 region 2 382 451 7.3E-22 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 SUPERFAMILY SSF88946 109 449 1.41E-80 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06870 ef21c25ca69009ce92e7a58bf104de10 615 Gene3D G3DSA:1.10.601.10 106 451 5.8E-100 T 19-04-2016 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 7 497 33.228 T 19-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 SUPERFAMILY SSF53187 176 495 1.29E-116 T 19-04-2016 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 341 348 - T 19-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 PANTHER PTHR11963 75 498 2.2E-164 T 19-04-2016 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 Gene3D G3DSA:3.40.630.10 173 496 1.5E-127 T 19-04-2016 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 SUPERFAMILY SSF52949 20 164 1.47E-20 T 19-04-2016 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 PANTHER PTHR11963:SF13 75 498 2.2E-164 T 19-04-2016 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 Gene3D G3DSA:3.40.220.10 21 161 2.5E-12 T 19-04-2016 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 23 137 4.3E-9 T 19-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 PRINTS PR00481 Cytosol aminopeptidase signature 315 336 1.4E-51 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 PRINTS PR00481 Cytosol aminopeptidase signature 366 381 1.4E-51 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 PRINTS PR00481 Cytosol aminopeptidase signature 256 273 1.4E-51 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 PRINTS PR00481 Cytosol aminopeptidase signature 337 357 1.4E-51 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 PRINTS PR00481 Cytosol aminopeptidase signature 278 299 1.4E-51 T 19-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMF_RS08685 1dc4d2ab02c1d95754f419dbdf32e708 498 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 180 488 9.2E-117 T 19-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMF_RS10030 c94597b19d4ecdeb4e8a3e84492972f0 326 PANTHER PTHR12126 11 317 1.7E-52 T 19-04-2016 AMF_RS10030 c94597b19d4ecdeb4e8a3e84492972f0 326 Gene3D G3DSA:3.40.50.720 10 232 1.0E-43 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS10030 c94597b19d4ecdeb4e8a3e84492972f0 326 SUPERFAMILY SSF51735 10 260 3.46E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS10030 c94597b19d4ecdeb4e8a3e84492972f0 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 13 213 3.7E-13 T 19-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 AMF_RS09440 262e323b740216723fc537b09e54c881 83 Pfam PF07330 Protein of unknown function (DUF1467) 3 72 4.7E-14 T 19-04-2016 IPR009935 Protein of unknown function DUF1467 AMF_RS06105 5ae39529cac1883ba0b66abd2ecf92f3 408 Gene3D G3DSA:3.90.1150.10 275 406 1.1E-23 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS06105 5ae39529cac1883ba0b66abd2ecf92f3 408 SUPERFAMILY SSF53383 73 405 3.27E-66 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMF_RS06105 5ae39529cac1883ba0b66abd2ecf92f3 408 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 38 404 1.5E-71 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMF_RS06105 5ae39529cac1883ba0b66abd2ecf92f3 408 Gene3D G3DSA:3.40.640.10 37 273 7.4E-54 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMF_RS06105 5ae39529cac1883ba0b66abd2ecf92f3 408 PIRSF PIRSF001434 2 408 1.0E-101 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMF_RS06105 5ae39529cac1883ba0b66abd2ecf92f3 408 PANTHER PTHR11808 75 408 2.5E-80 T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMF_RS06105 5ae39529cac1883ba0b66abd2ecf92f3 408 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 216 230 - T 19-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 AMF_RS08300 017eca35f5440e51d578c23abe093448 161 Gene3D G3DSA:2.30.110.10 5 157 8.1E-50 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMF_RS08300 017eca35f5440e51d578c23abe093448 161 PANTHER PTHR30466:SF1 5 159 1.1E-39 T 19-04-2016 AMF_RS08300 017eca35f5440e51d578c23abe093448 161 Pfam PF01613 Flavin reductase like domain 15 159 4.5E-35 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMF_RS08300 017eca35f5440e51d578c23abe093448 161 SMART SM00903 15 158 5.2E-55 T 19-04-2016 IPR002563 Flavin reductase like domain GO:0010181 AMF_RS08300 017eca35f5440e51d578c23abe093448 161 PANTHER PTHR30466 5 159 1.1E-39 T 19-04-2016 AMF_RS08300 017eca35f5440e51d578c23abe093448 161 SUPERFAMILY SSF50475 6 159 2.11E-46 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMF_RS07830 1f967ea09a5e6b29d135efb225cd60b0 387 Gene3D G3DSA:1.10.1040.10 194 289 1.0E-5 T 19-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMF_RS07830 1f967ea09a5e6b29d135efb225cd60b0 387 SUPERFAMILY SSF48179 185 289 5.61E-10 T 19-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AMF_RS06965 18d6b9268d57a2c717f969d87500dce2 202 PIRSF PIRSF000239 1 199 3.0E-56 T 19-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 AMF_RS06965 18d6b9268d57a2c717f969d87500dce2 202 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 158 192 7.5E-10 T 19-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMF_RS06965 18d6b9268d57a2c717f969d87500dce2 202 Gene3D G3DSA:3.30.1020.10 160 195 1.1E-10 T 19-04-2016 AMF_RS06965 18d6b9268d57a2c717f969d87500dce2 202 PANTHER PTHR10681 4 192 4.2E-71 T 19-04-2016 AMF_RS06965 18d6b9268d57a2c717f969d87500dce2 202 Pfam PF00578 AhpC/TSA family 5 137 2.2E-29 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMF_RS06965 18d6b9268d57a2c717f969d87500dce2 202 Gene3D G3DSA:3.40.30.10 4 159 3.5E-57 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS06965 18d6b9268d57a2c717f969d87500dce2 202 PANTHER PTHR10681:SF22 4 192 4.2E-71 T 19-04-2016 AMF_RS06965 18d6b9268d57a2c717f969d87500dce2 202 SUPERFAMILY SSF52833 1 195 1.89E-57 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS08475 b150a616d339f44265869ba07eb7ca6b 222 Gene3D G3DSA:4.10.960.10 71 158 1.5E-28 T 19-04-2016 AMF_RS08475 b150a616d339f44265869ba07eb7ca6b 222 ProSitePatterns PS00474 Ribosomal protein L3 signature. 94 117 - T 19-04-2016 IPR019926 Ribosomal protein L3, conserved site AMF_RS08475 b150a616d339f44265869ba07eb7ca6b 222 Pfam PF00297 Ribosomal protein L3 91 175 8.7E-13 T 19-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08475 b150a616d339f44265869ba07eb7ca6b 222 PANTHER PTHR11229 2 202 1.0E-78 T 19-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08475 b150a616d339f44265869ba07eb7ca6b 222 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 2 198 2.2E-72 T 19-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08475 b150a616d339f44265869ba07eb7ca6b 222 SUPERFAMILY SSF50447 2 206 2.12E-64 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS07510 241a1fb6f2519c67586dfd3cb5f29b04 136 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 117 134 - T 19-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site AMF_RS07510 241a1fb6f2519c67586dfd3cb5f29b04 136 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 27 135 9.2E-29 T 19-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 AMF_RS07510 241a1fb6f2519c67586dfd3cb5f29b04 136 Pfam PF01521 Iron-sulphur cluster biosynthesis 27 132 8.8E-12 T 19-04-2016 IPR000361 FeS cluster biogenesis AMF_RS07510 241a1fb6f2519c67586dfd3cb5f29b04 136 PANTHER PTHR10072 24 136 1.1E-34 T 19-04-2016 AMF_RS07510 241a1fb6f2519c67586dfd3cb5f29b04 136 SUPERFAMILY SSF89360 27 125 1.16E-22 T 19-04-2016 IPR000361 FeS cluster biogenesis AMF_RS07510 241a1fb6f2519c67586dfd3cb5f29b04 136 Gene3D G3DSA:2.60.300.12 26 125 1.1E-25 T 19-04-2016 IPR000361 FeS cluster biogenesis AMF_RS05420 b8a04156cde289cc9eadd1a568540d52 270 Pfam PF03524 Conjugal transfer protein 32 256 9.7E-63 T 19-04-2016 IPR010258 Conjugal transfer, TrbG/VirB9/CagX AMF_RS05420 b8a04156cde289cc9eadd1a568540d52 270 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 6 257 7.6E-68 T 19-04-2016 IPR014148 P-type conjugative transfer protein VirB9 AMF_RS06710 c8f8f909c5a2c872ce9b953c880badc8 107 SUPERFAMILY SSF47413 11 79 2.11E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMF_RS06710 c8f8f909c5a2c872ce9b953c880badc8 107 Pfam PF13744 Helix-turn-helix domain 11 77 3.8E-15 T 19-04-2016 AMF_RS06710 c8f8f909c5a2c872ce9b953c880badc8 107 Gene3D G3DSA:1.10.260.40 10 68 1.3E-21 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 Gene3D G3DSA:3.40.50.300 811 972 9.9E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 SUPERFAMILY SSF143517 1004 1149 2.62E-29 T 19-04-2016 AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 Gene3D G3DSA:3.40.50.300 603 795 4.2E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 SUPERFAMILY SSF52540 37 356 8.63E-61 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 PANTHER PTHR14025 459 1147 1.7E-257 T 19-04-2016 AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 SMART SM00490 835 919 4.8E-16 T 19-04-2016 IPR001650 Helicase, C-terminal AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 SUPERFAMILY SSF52540 791 999 9.24E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 SMART SM00487 608 805 5.2E-31 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 Pfam PF02559 CarD-like/TRCF domain 491 582 7.4E-21 T 19-04-2016 IPR003711 CarD-like/TRCF domain AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 166 1087 4.4E-276 T 19-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 Pfam PF00271 Helicase conserved C-terminal domain 813 918 1.0E-16 T 19-04-2016 IPR001650 Helicase, C-terminal AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 SMART SM00982 1014 1114 7.3E-30 T 19-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 SUPERFAMILY SSF141259 483 552 3.01E-16 T 19-04-2016 IPR003711 CarD-like/TRCF domain AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 SMART SM01058 490 585 7.5E-33 T 19-04-2016 IPR003711 CarD-like/TRCF domain AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 Pfam PF03461 TRCF domain 1016 1103 3.6E-23 T 19-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 Pfam PF00270 DEAD/DEAH box helicase 615 773 2.7E-17 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 PANTHER PTHR14025:SF21 459 1147 1.7E-257 T 19-04-2016 AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 SUPERFAMILY SSF52540 535 792 2.6E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 Gene3D G3DSA:3.30.2060.10 150 222 4.8E-11 T 19-04-2016 AMF_RS05525 53a0506619bf698be4110041ae85081c 1152 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 49 1145 25.372 T 19-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMF_RS05165 ebd7ee89f40d026eebb4d3385a5ef679 504 PANTHER PTHR22773 1 497 2.6E-107 T 19-04-2016 AMF_RS05165 ebd7ee89f40d026eebb4d3385a5ef679 504 PANTHER PTHR22773:SF49 1 497 2.6E-107 T 19-04-2016 AMF_RS05165 ebd7ee89f40d026eebb4d3385a5ef679 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 140 159 1.4E-11 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMF_RS05165 ebd7ee89f40d026eebb4d3385a5ef679 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 242 266 1.4E-11 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMF_RS05165 ebd7ee89f40d026eebb4d3385a5ef679 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 334 353 1.4E-11 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMF_RS05165 ebd7ee89f40d026eebb4d3385a5ef679 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 387 413 1.4E-11 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMF_RS05165 ebd7ee89f40d026eebb4d3385a5ef679 504 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 170 194 1.4E-11 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMF_RS05165 ebd7ee89f40d026eebb4d3385a5ef679 504 Pfam PF00361 Proton-conducting membrane transporter 134 429 1.5E-55 T 19-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 AMF_RS09095 0015e6b3512fc98bf2527c63f487f21c 285 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 28 277 4.3E-69 T 19-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMF_RS09095 0015e6b3512fc98bf2527c63f487f21c 285 Pfam PF05175 Methyltransferase small domain 116 193 2.0E-10 T 19-04-2016 IPR007848 Methyltransferase small domain GO:0008168 AMF_RS09095 0015e6b3512fc98bf2527c63f487f21c 285 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 6 260 1.8E-53 T 19-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMF_RS09095 0015e6b3512fc98bf2527c63f487f21c 285 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 6 281 36.53 T 19-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMF_RS09095 0015e6b3512fc98bf2527c63f487f21c 285 Gene3D G3DSA:3.40.50.150 91 279 5.8E-48 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS09095 0015e6b3512fc98bf2527c63f487f21c 285 Gene3D G3DSA:1.10.8.10 4 89 1.6E-25 T 19-04-2016 AMF_RS09095 0015e6b3512fc98bf2527c63f487f21c 285 PANTHER PTHR18895:SF64 1 280 3.7E-71 T 19-04-2016 AMF_RS09095 0015e6b3512fc98bf2527c63f487f21c 285 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 186 192 - T 19-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMF_RS09095 0015e6b3512fc98bf2527c63f487f21c 285 SUPERFAMILY SSF53335 8 267 1.39E-45 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS09095 0015e6b3512fc98bf2527c63f487f21c 285 PANTHER PTHR18895 1 280 3.7E-71 T 19-04-2016 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 Gene3D G3DSA:3.40.50.10380 8 162 7.9E-48 T 19-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 PANTHER PTHR23406 374 449 1.9E-169 T 19-04-2016 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 PANTHER PTHR23406 32 357 1.9E-169 T 19-04-2016 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 SUPERFAMILY SSF53223 12 163 6.12E-51 T 19-04-2016 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 Pfam PF03949 Malic enzyme, NAD binding domain 167 358 5.2E-19 T 19-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 Gene3D G3DSA:3.40.50.10750 572 721 2.2E-45 T 19-04-2016 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 SMART SM00919 165 402 5.2E-134 T 19-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 Gene3D G3DSA:3.40.50.720 163 449 8.6E-81 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 Pfam PF01515 Phosphate acetyl/butaryl transferase 436 744 2.9E-74 T 19-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 ProSitePatterns PS00331 Malic enzymes signature. 161 177 - T 19-04-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 PIRSF PIRSF036684 3 749 0.0 T 19-04-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 SUPERFAMILY SSF53659 432 746 9.05E-74 T 19-04-2016 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 Pfam PF00390 Malic enzyme, N-terminal domain 22 152 3.3E-24 T 19-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 SUPERFAMILY SSF51735 165 444 3.6E-84 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 PANTHER PTHR23406:SF23 374 449 1.9E-169 T 19-04-2016 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 PANTHER PTHR23406:SF23 32 357 1.9E-169 T 19-04-2016 AMF_RS05155 9146de30187e6564e92fe001da57cd1a 750 SMART SM01274 20 153 3.9E-76 T 19-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMF_RS09100 cca5767931f8b29be51490518846a878 265 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 171 189 - T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMF_RS09100 cca5767931f8b29be51490518846a878 265 SUPERFAMILY SSF55920 7 257 2.09E-83 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMF_RS09100 cca5767931f8b29be51490518846a878 265 Gene3D G3DSA:3.90.230.10 8 259 1.0E-88 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMF_RS09100 cca5767931f8b29be51490518846a878 265 PANTHER PTHR10804 7 253 2.6E-124 T 19-04-2016 AMF_RS09100 cca5767931f8b29be51490518846a878 265 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 1.1E-20 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMF_RS09100 cca5767931f8b29be51490518846a878 265 PRINTS PR00599 Methionine aminopeptidase-1 signature 165 177 1.1E-20 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMF_RS09100 cca5767931f8b29be51490518846a878 265 PRINTS PR00599 Methionine aminopeptidase-1 signature 72 85 1.1E-20 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMF_RS09100 cca5767931f8b29be51490518846a878 265 PRINTS PR00599 Methionine aminopeptidase-1 signature 94 110 1.1E-20 T 19-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase AMF_RS09100 cca5767931f8b29be51490518846a878 265 Hamap MF_01974 Methionine aminopeptidase [map]. 7 255 40.029 T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMF_RS09100 cca5767931f8b29be51490518846a878 265 Pfam PF00557 Metallopeptidase family M24 16 246 3.4E-50 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMF_RS09100 cca5767931f8b29be51490518846a878 265 PANTHER PTHR10804:SF75 7 253 2.6E-124 T 19-04-2016 AMF_RS09100 cca5767931f8b29be51490518846a878 265 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 7 253 1.3E-91 T 19-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 AMF_RS09585 4dfb9335c74dd0cb880cf1e84dc669f4 153 Pfam PF01617 Surface antigen 32 127 4.3E-10 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS06615 0459e0604a18e0529e01e2d58ba4a1bf 529 Gene3D G3DSA:3.90.1310.10 132 186 9.9E-12 T 19-04-2016 AMF_RS06615 0459e0604a18e0529e01e2d58ba4a1bf 529 SUPERFAMILY SSF56601 199 526 5.44E-79 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMF_RS06615 0459e0604a18e0529e01e2d58ba4a1bf 529 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 173 3.8E-15 T 19-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMF_RS06615 0459e0604a18e0529e01e2d58ba4a1bf 529 Gene3D G3DSA:3.40.710.10 198 520 1.5E-78 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMF_RS06615 0459e0604a18e0529e01e2d58ba4a1bf 529 SUPERFAMILY SSF56519 67 186 6.67E-30 T 19-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMF_RS06615 0459e0604a18e0529e01e2d58ba4a1bf 529 PANTHER PTHR30627:SF1 9 526 6.1E-126 T 19-04-2016 AMF_RS06615 0459e0604a18e0529e01e2d58ba4a1bf 529 Pfam PF00905 Penicillin binding protein transpeptidase domain 224 515 1.2E-57 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMF_RS06615 0459e0604a18e0529e01e2d58ba4a1bf 529 PANTHER PTHR30627 9 526 6.1E-126 T 19-04-2016 AMF_RS10095 36d620bbfc463405ea4f13a5f9dc9f81 331 Gene3D G3DSA:3.40.50.970 4 197 4.5E-92 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS10095 36d620bbfc463405ea4f13a5f9dc9f81 331 Pfam PF02779 Transketolase, pyrimidine binding domain 4 179 4.8E-50 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_RS10095 36d620bbfc463405ea4f13a5f9dc9f81 331 SUPERFAMILY SSF52518 2 207 1.33E-69 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS10095 36d620bbfc463405ea4f13a5f9dc9f81 331 SUPERFAMILY SSF52922 191 327 5.1E-44 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMF_RS10095 36d620bbfc463405ea4f13a5f9dc9f81 331 Gene3D G3DSA:3.40.50.920 198 327 1.8E-47 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMF_RS10095 36d620bbfc463405ea4f13a5f9dc9f81 331 Pfam PF02780 Transketolase, C-terminal domain 197 319 6.4E-41 T 19-04-2016 IPR033248 Transketolase, C-terminal domain AMF_RS10095 36d620bbfc463405ea4f13a5f9dc9f81 331 SMART SM00861 4 179 1.3E-67 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_RS10095 36d620bbfc463405ea4f13a5f9dc9f81 331 PANTHER PTHR11624 4 331 1.0E-179 T 19-04-2016 IPR033247 Transketolase family AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Gene3D G3DSA:1.10.268.10 360 483 2.5E-35 T 19-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Gene3D G3DSA:2.120.10.90 786 885 2.2E-110 T 19-04-2016 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Gene3D G3DSA:2.120.10.90 519 733 2.2E-110 T 19-04-2016 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 PANTHER PTHR10169:SF48 438 732 6.8E-297 T 19-04-2016 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 PANTHER PTHR10169:SF48 777 860 6.8E-297 T 19-04-2016 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 PANTHER PTHR10169:SF48 5 413 6.8E-297 T 19-04-2016 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 6 885 0.0 T 19-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Gene3D G3DSA:3.90.199.10 31 213 5.1E-81 T 19-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 SUPERFAMILY SSF56719 27 509 6.02E-167 T 19-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 SUPERFAMILY SSF101904 521 734 2.35E-93 T 19-04-2016 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 SUPERFAMILY SSF101904 786 897 2.35E-93 T 19-04-2016 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Gene3D G3DSA:3.30.1360.40 233 329 3.3E-35 T 19-04-2016 IPR024946 Arginine repressor C-terminal-like domain AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 PANTHER PTHR10169 438 732 6.8E-297 T 19-04-2016 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 PANTHER PTHR10169 777 860 6.8E-297 T 19-04-2016 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 PANTHER PTHR10169 5 413 6.8E-297 T 19-04-2016 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 638 681 0.011 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 527 572 6.3E-10 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 789 832 9.6E-10 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 577 625 2.9E-4 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 839 885 6.0E-12 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 685 732 2.1E-8 T 19-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 893 27.188 T 19-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 29 488 4.9E-150 T 19-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS06435 2279684d232ab0dfb54991627cc06872 902 SMART SM00434 8 487 5.1E-249 T 19-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS06085 613244aa625c7ed6b55380b0ea15de2c 308 Gene3D G3DSA:3.40.1090.10 4 305 4.2E-69 T 19-04-2016 AMF_RS06085 613244aa625c7ed6b55380b0ea15de2c 308 SUPERFAMILY SSF52151 3 298 3.92E-43 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMF_RS06085 613244aa625c7ed6b55380b0ea15de2c 308 Pfam PF01734 Patatin-like phospholipase 6 188 5.6E-19 T 19-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 AMF_RS06085 613244aa625c7ed6b55380b0ea15de2c 308 PANTHER PTHR32241:SF3 5 295 1.1E-30 T 19-04-2016 AMF_RS06085 613244aa625c7ed6b55380b0ea15de2c 308 PANTHER PTHR32241 5 295 1.1E-30 T 19-04-2016 AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 Pfam PF02954 Bacterial regulatory protein, Fis family 421 460 1.9E-10 T 19-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 Gene3D G3DSA:1.10.8.60 330 400 4.6E-19 T 19-04-2016 AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 SUPERFAMILY SSF52172 14 194 1.85E-38 T 19-04-2016 IPR011006 CheY-like superfamily AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 SMART SM00382 171 316 9.8E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 Gene3D G3DSA:3.40.50.2300 14 139 6.6E-32 T 19-04-2016 AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 366 375 - T 19-04-2016 IPR025944 Sigma-54 interaction domain, conserved site AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 Pfam PF00072 Response regulator receiver domain 15 126 2.7E-25 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 Gene3D G3DSA:3.40.50.300 149 324 1.9E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 SUPERFAMILY SSF46689 366 463 4.93E-14 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 PANTHER PTHR32071:SF17 1 463 1.7E-147 T 19-04-2016 AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 Pfam PF00158 Sigma-54 interaction domain 151 319 4.2E-37 T 19-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 SUPERFAMILY SSF52540 150 397 1.83E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 PANTHER PTHR32071 1 463 1.7E-147 T 19-04-2016 AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 Gene3D G3DSA:1.10.10.60 415 463 2.4E-9 T 19-04-2016 IPR009057 Homeodomain-like GO:0003677 AMF_RS05830 bec14557d9ebe14da21e03adb5e7dd5c 466 SMART SM00448 13 126 1.3E-31 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Gene3D G3DSA:3.30.56.10 2 30 9.5E-11 T 19-04-2016 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 771 34.873 T 19-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Pfam PF03147 Ferredoxin-fold anticodon binding domain 687 777 1.1E-16 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 SMART SM00873 200 374 9.7E-64 T 19-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Pfam PF01588 Putative tRNA binding domain 36 139 2.3E-21 T 19-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 SUPERFAMILY SSF55681 457 672 1.94E-38 T 19-04-2016 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 5 777 6.7E-192 T 19-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 SUPERFAMILY SSF50249 34 183 7.59E-30 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Gene3D G3DSA:3.30.930.10 483 673 2.8E-49 T 19-04-2016 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Gene3D G3DSA:3.30.70.380 688 777 1.9E-16 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Pfam PF03483 B3/4 domain 204 374 6.0E-55 T 19-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 SUPERFAMILY SSF56037 201 385 6.54E-60 T 19-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 PANTHER PTHR10947 1 777 3.8E-169 T 19-04-2016 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 PANTHER PTHR10947:SF0 1 777 3.8E-169 T 19-04-2016 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Gene3D G3DSA:3.30.56.20 392 465 1.4E-19 T 19-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 SMART SM00874 391 461 1.9E-20 T 19-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Gene3D G3DSA:2.40.50.140 36 213 4.1E-34 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 SUPERFAMILY SSF54991 686 777 1.07E-19 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Pfam PF03484 tRNA synthetase B5 domain 395 461 1.0E-13 T 19-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 SMART SM00896 687 777 1.6E-25 T 19-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 SUPERFAMILY SSF46955 392 465 2.29E-13 T 19-04-2016 IPR009061 Putative DNA-binding domain AMF_RS08350 13abedb0b1d7469a51294887330b3369 779 Gene3D G3DSA:3.50.40.10 214 381 6.0E-60 T 19-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 1 76 17.508 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 Pfam PF00366 Ribosomal protein S17 8 74 7.8E-22 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 5 74 5.7E-27 T 19-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 PANTHER PTHR10744:SF1 6 75 1.5E-17 T 19-04-2016 AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 SUPERFAMILY SSF50249 5 75 2.14E-22 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 Gene3D G3DSA:2.40.50.140 5 75 3.8E-22 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 74 2.0E-27 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 PANTHER PTHR10744 6 75 1.5E-17 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 PRINTS PR00973 Ribosomal protein S17 family signature 22 45 1.6E-6 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 PRINTS PR00973 Ribosomal protein S17 family signature 64 71 1.6E-6 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08430 d06c795bdfdc8af3a90a568e5d911fcf 76 PRINTS PR00973 Ribosomal protein S17 family signature 54 64 1.6E-6 T 19-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 287 300 - T 19-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 SUPERFAMILY SSF51905 5 169 1.69E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 SUPERFAMILY SSF51905 269 385 1.69E-38 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 288 304 3.1E-11 T 19-04-2016 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 273 288 3.1E-11 T 19-04-2016 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.1E-11 T 19-04-2016 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 PANTHER PTHR13789:SF5 3 383 1.8E-75 T 19-04-2016 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 PANTHER PTHR13789 3 383 1.8E-75 T 19-04-2016 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 Pfam PF01494 FAD binding domain 5 309 1.1E-17 T 19-04-2016 IPR002938 FAD-binding domain GO:0071949 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 383 1.1E-95 T 19-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 Gene3D G3DSA:3.50.50.60 5 174 2.1E-29 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS09840 a7095fb2d16952d0955316cf63beacec 388 Gene3D G3DSA:3.50.50.60 261 349 2.1E-29 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 Gene3D G3DSA:3.30.420.40 204 355 2.2E-27 T 19-04-2016 AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 Gene3D G3DSA:3.30.420.40 104 203 1.3E-43 T 19-04-2016 AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 Gene3D G3DSA:3.30.420.40 11 43 1.3E-43 T 19-04-2016 AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 PANTHER PTHR19375:SF176 15 569 1.2E-153 T 19-04-2016 AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 Gene3D G3DSA:2.60.34.10 365 548 2.2E-46 T 19-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 SUPERFAMILY SSF53067 193 377 3.69E-43 T 19-04-2016 AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 20 27 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 PANTHER PTHR19375 15 569 1.2E-153 T 19-04-2016 AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 16 29 1.7E-42 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 359 379 1.7E-42 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 464 480 1.7E-42 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 328 344 1.7E-42 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 384 403 1.7E-42 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 203 213 1.7E-42 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 45 57 1.7E-42 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 PRINTS PR00301 70kDa heat shock protein signature 143 163 1.7E-42 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 SUPERFAMILY SSF53067 15 186 1.73E-42 T 19-04-2016 AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 Pfam PF00012 Hsp70 protein 18 579 1.2E-135 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 197 210 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMF_RS07500 d03da5b93868775bdfe344287517d2d5 602 SUPERFAMILY SSF100920 384 531 2.75E-40 T 19-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain AMF_RS05645 93f54eb3d6199fe92031082316a8dd94 162 PANTHER PTHR10681 43 156 7.2E-15 T 19-04-2016 AMF_RS05645 93f54eb3d6199fe92031082316a8dd94 162 PANTHER PTHR10681:SF107 43 156 7.2E-15 T 19-04-2016 AMF_RS05645 93f54eb3d6199fe92031082316a8dd94 162 Gene3D G3DSA:3.40.30.10 14 157 5.6E-26 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05645 93f54eb3d6199fe92031082316a8dd94 162 SUPERFAMILY SSF52833 32 156 4.55E-23 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05645 93f54eb3d6199fe92031082316a8dd94 162 ProSitePatterns PS00194 Thioredoxin family active site. 57 75 - T 19-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:2.40.50.150 852 962 1.0E-43 T 19-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:2.40.50.150 1077 1091 1.0E-43 T 19-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Pfam PF04563 RNA polymerase beta subunit 38 522 1.8E-22 T 19-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Pfam PF10385 RNA polymerase beta subunit external 1 domain 617 682 9.6E-21 T 19-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:3.90.1100.10 35 176 8.1E-137 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:3.90.1100.10 471 617 8.1E-137 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:3.90.1100.10 685 739 8.1E-137 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 23 1373 11.735 T 19-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Pfam PF04565 RNA polymerase Rpb2, domain 3 539 607 1.3E-31 T 19-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Pfam PF00562 RNA polymerase Rpb2, domain 6 743 1294 2.2E-148 T 19-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1095 1107 - T 19-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Pfam PF04560 RNA polymerase Rpb2, domain 7 1297 1371 6.9E-25 T 19-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:2.30.150.10 618 682 1.2E-22 T 19-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 SUPERFAMILY SSF64484 30 251 0.0 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 SUPERFAMILY SSF64484 1071 1374 0.0 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 SUPERFAMILY SSF64484 369 964 0.0 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:2.40.50.100 741 817 2.8E-27 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Pfam PF04561 RNA polymerase Rpb2, domain 2 382 480 4.9E-22 T 19-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Pfam PF04561 RNA polymerase Rpb2, domain 2 176 248 1.1E-8 T 19-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 34 1368 0.0 T 19-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:2.40.270.10 818 845 2.1E-82 T 19-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:2.40.270.10 1092 1273 2.1E-82 T 19-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:3.90.1110.10 178 255 1.2E-63 T 19-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 Gene3D G3DSA:3.90.1110.10 372 470 1.2E-63 T 19-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 PANTHER PTHR20856:SF20 1065 1160 0.0 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 PANTHER PTHR20856:SF20 768 955 0.0 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 PANTHER PTHR20856:SF20 1213 1377 0.0 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 PANTHER PTHR20856:SF20 366 751 0.0 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 PANTHER PTHR20856:SF20 37 256 0.0 T 19-04-2016 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 PANTHER PTHR20856 1065 1160 0.0 T 19-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 PANTHER PTHR20856 768 955 0.0 T 19-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 PANTHER PTHR20856 1213 1377 0.0 T 19-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 PANTHER PTHR20856 366 751 0.0 T 19-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06025 2d03c20215be315f4f5d32868f2c691e 1382 PANTHER PTHR20856 37 256 0.0 T 19-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 288 3.5E-137 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 5.34E-36 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 5.34E-36 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 PRINTS PR01798 Succinyl-CoA synthase signature 241 258 5.34E-36 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 5.34E-36 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 PANTHER PTHR11117 1 292 4.1E-187 T 19-04-2016 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 Pfam PF02629 CoA binding domain 6 99 1.4E-29 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 Gene3D G3DSA:3.40.50.261 120 289 2.9E-71 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 Pfam PF00549 CoA-ligase 151 269 1.2E-17 T 19-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 SUPERFAMILY SSF51735 1 122 5.42E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 Gene3D G3DSA:3.40.50.720 2 119 4.3E-56 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 SMART SM00881 4 100 2.8E-35 T 19-04-2016 IPR003781 CoA-binding GO:0048037 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 PIRSF PIRSF001553 1 292 2.0E-126 T 19-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 SUPERFAMILY SSF52210 123 284 4.84E-51 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS05895 1b63a0a88d6b130b75d875f890ba1e65 294 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 237 250 - T 19-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 808 0.0 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Gene3D G3DSA:3.40.50.300 357 404 3.7E-115 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Gene3D G3DSA:3.40.50.300 20 228 3.7E-115 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 825 19.109 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 SMART SM00957 5 390 6.8E-270 T 19-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 ProSitePatterns PS01312 SecA family signature. 488 503 - T 19-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Pfam PF07517 SecA DEAD-like domain 20 389 2.2E-123 T 19-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Pfam PF07516 SecA Wing and Scaffold domain 611 822 5.3E-50 T 19-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 SUPERFAMILY SSF81886 614 859 6.41E-60 T 19-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 SMART SM00958 228 346 3.9E-71 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Pfam PF01043 SecA preprotein cross-linking domain 233 346 1.4E-36 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Gene3D G3DSA:3.40.50.300 405 613 4.9E-90 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 SUPERFAMILY SSF81767 227 356 1.02E-40 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 SUPERFAMILY SSF52540 356 403 3.06E-77 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 SUPERFAMILY SSF52540 21 228 3.06E-77 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 SUPERFAMILY SSF52540 405 612 3.19E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Gene3D G3DSA:1.10.3060.10 642 823 7.0E-36 T 19-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 PRINTS PR00906 SecA protein signature 63 87 3.5E-64 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 PRINTS PR00906 SecA protein signature 401 414 3.5E-64 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 PRINTS PR00906 SecA protein signature 117 127 3.5E-64 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 PRINTS PR00906 SecA protein signature 327 349 3.5E-64 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 PRINTS PR00906 SecA protein signature 170 190 3.5E-64 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 PRINTS PR00906 SecA protein signature 101 115 3.5E-64 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 PRINTS PR00906 SecA protein signature 364 381 3.5E-64 T 19-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Gene3D G3DSA:3.10.450.50 841 868 4.0E-9 T 19-04-2016 IPR032710 NTF2-like domain AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 PANTHER PTHR30612 544 872 0.0 T 19-04-2016 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 PANTHER PTHR30612 18 508 0.0 T 19-04-2016 AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Pfam PF02810 SEC-C motif 851 868 1.4E-9 T 19-04-2016 IPR004027 SEC-C motif AMF_RS09240 09427aa7c0baf05b8aa483279db2ec2f 872 Gene3D G3DSA:3.90.1440.10 230 355 1.9E-42 T 19-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 SUPERFAMILY SSF52317 165 364 2.07E-53 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PANTHER PTHR11405:SF4 6 365 5.8E-142 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 Gene3D G3DSA:3.40.50.880 171 363 3.7E-61 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00097 Anthranilate synthase component II signature 251 262 1.7E-7 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00097 Anthranilate synthase component II signature 336 349 1.7E-7 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00097 Anthranilate synthase component II signature 222 231 1.7E-7 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 Gene3D G3DSA:3.50.30.20 7 141 2.3E-50 T 19-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 8 361 4.4E-123 T 19-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PANTHER PTHR11405 6 365 5.8E-142 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00096 Glutamine amidotransferase superfamily signature 251 262 3.4E-12 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00096 Glutamine amidotransferase superfamily signature 336 349 3.4E-12 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00096 Glutamine amidotransferase superfamily signature 222 231 3.4E-12 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 Pfam PF00117 Glutamine amidotransferase class-I 181 359 6.0E-41 T 19-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 251 267 3.7E-33 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 268 285 3.7E-33 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 219 233 3.7E-33 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 293 304 3.7E-33 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 179 193 3.7E-33 T 19-04-2016 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 SMART SM01097 6 135 1.6E-69 T 19-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 8 134 1.7E-44 T 19-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 SUPERFAMILY SSF52021 7 147 3.14E-49 T 19-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08010 e3a5159817683949f6af3ce4ab4679ac 366 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 6 365 41.98 T 19-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 SUPERFAMILY SSF53720 531 1030 4.97E-130 T 19-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 Pfam PF01619 Proline dehydrogenase 184 477 3.5E-83 T 19-04-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 Gene3D G3DSA:3.40.605.10 553 811 1.1E-71 T 19-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 SUPERFAMILY SSF51730 178 520 3.92E-103 T 19-04-2016 IPR029041 FAD-linked oxidoreductase-like AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 SUPERFAMILY SSF81935 8 176 5.49E-59 T 19-04-2016 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 Pfam PF00171 Aldehyde dehydrogenase family 564 1027 1.6E-121 T 19-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 Gene3D G3DSA:1.20.5.550 10 58 3.2E-4 T 19-04-2016 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 Gene3D G3DSA:1.10.2060.10 59 176 8.9E-43 T 19-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 Gene3D G3DSA:3.20.20.220 181 518 7.7E-92 T 19-04-2016 IPR029041 FAD-linked oxidoreductase-like AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 PIRSF PIRSF000197 3 1042 0.0 T 19-04-2016 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 PANTHER PTHR11699 530 1030 3.5E-182 T 19-04-2016 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 64 175 3.2E-39 T 19-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 PANTHER PTHR11699:SF18 530 1030 3.5E-182 T 19-04-2016 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 513 1023 2.3E-197 T 19-04-2016 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 AMF_RS07255 dad5459af552e67c392e848aad6dbd15 1046 Gene3D G3DSA:3.40.309.10 812 1002 4.0E-46 T 19-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 AMF_RS09740 eb8a7fd7739c6987af942dbc29de152e 154 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 113 123 - T 19-04-2016 IPR020549 Endoribonuclease YbeY, conserved site AMF_RS09740 eb8a7fd7739c6987af942dbc29de152e 154 SUPERFAMILY SSF55486 22 152 1.15E-36 T 19-04-2016 AMF_RS09740 eb8a7fd7739c6987af942dbc29de152e 154 PANTHER PTHR22881 44 149 6.6E-29 T 19-04-2016 AMF_RS09740 eb8a7fd7739c6987af942dbc29de152e 154 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 1 147 19.7 T 19-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMF_RS09740 eb8a7fd7739c6987af942dbc29de152e 154 Gene3D G3DSA:3.40.390.30 20 152 1.1E-35 T 19-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 AMF_RS09740 eb8a7fd7739c6987af942dbc29de152e 154 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 44 144 8.8E-28 T 19-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMF_RS09740 eb8a7fd7739c6987af942dbc29de152e 154 Pfam PF02130 Uncharacterized protein family UPF0054 20 142 6.9E-30 T 19-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMF_RS07145 dcc94b3326c4ce119bdbdfcc977f1548 270 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 6 261 49.449 T 19-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMF_RS07145 dcc94b3326c4ce119bdbdfcc977f1548 270 Gene3D G3DSA:3.40.50.150 4 191 9.5E-62 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07145 dcc94b3326c4ce119bdbdfcc977f1548 270 PANTHER PTHR11727 1 260 2.4E-77 T 19-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AMF_RS07145 dcc94b3326c4ce119bdbdfcc977f1548 270 Gene3D G3DSA:1.10.8.100 199 261 1.3E-12 T 19-04-2016 IPR023165 rRNA adenine dimethylase-like AMF_RS07145 dcc94b3326c4ce119bdbdfcc977f1548 270 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 38 66 - T 19-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AMF_RS07145 dcc94b3326c4ce119bdbdfcc977f1548 270 Pfam PF00398 Ribosomal RNA adenine dimethylase 6 261 5.7E-49 T 19-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AMF_RS07145 dcc94b3326c4ce119bdbdfcc977f1548 270 SUPERFAMILY SSF53335 6 262 3.88E-68 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07145 dcc94b3326c4ce119bdbdfcc977f1548 270 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 7 258 8.2E-71 T 19-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMF_RS07145 dcc94b3326c4ce119bdbdfcc977f1548 270 SMART SM00650 22 193 1.1E-54 T 19-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 AMF_RS06700 dec746ed022827b1c875eb14460cffca 221 Pfam PF01713 Smr domain 133 216 9.2E-18 T 19-04-2016 IPR002625 Smr domain AMF_RS06700 dec746ed022827b1c875eb14460cffca 221 PANTHER PTHR35562:SF2 121 216 5.2E-20 T 19-04-2016 AMF_RS06700 dec746ed022827b1c875eb14460cffca 221 SUPERFAMILY SSF160443 131 216 7.06E-13 T 19-04-2016 IPR002625 Smr domain AMF_RS06700 dec746ed022827b1c875eb14460cffca 221 PANTHER PTHR35562 121 216 5.2E-20 T 19-04-2016 AMF_RS05075 f51a356c9182d880cdece2a36bbeb3ac 155 SMART SM01001 1 146 1.1E-87 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMF_RS05075 f51a356c9182d880cdece2a36bbeb3ac 155 PANTHER PTHR23046 1 154 1.4E-73 T 19-04-2016 AMF_RS05075 f51a356c9182d880cdece2a36bbeb3ac 155 SUPERFAMILY SSF52255 1 150 1.96E-60 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMF_RS05075 f51a356c9182d880cdece2a36bbeb3ac 155 Pfam PF00731 AIR carboxylase 1 142 6.6E-60 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMF_RS05075 f51a356c9182d880cdece2a36bbeb3ac 155 PIRSF PIRSF001338 1 154 1.4E-62 T 19-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 AMF_RS05075 f51a356c9182d880cdece2a36bbeb3ac 155 Gene3D G3DSA:3.40.50.7700 1 148 1.2E-67 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMF_RS05075 f51a356c9182d880cdece2a36bbeb3ac 155 PANTHER PTHR23046:SF2 1 154 1.4E-73 T 19-04-2016 AMF_RS05075 f51a356c9182d880cdece2a36bbeb3ac 155 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 1 147 1.9E-59 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMF_RS05075 f51a356c9182d880cdece2a36bbeb3ac 155 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 1 150 28.767 T 19-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 AMF_RS07520 72befe8f8380e3e84cc94c63295b6813 408 PANTHER PTHR11601 7 406 1.1E-236 T 19-04-2016 AMF_RS07520 72befe8f8380e3e84cc94c63295b6813 408 Gene3D G3DSA:3.40.640.10 23 256 2.6E-95 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMF_RS07520 72befe8f8380e3e84cc94c63295b6813 408 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 7 400 54.068 T 19-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 AMF_RS07520 72befe8f8380e3e84cc94c63295b6813 408 PIRSF PIRSF005572 8 389 1.9E-130 T 19-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AMF_RS07520 72befe8f8380e3e84cc94c63295b6813 408 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 200 219 - T 19-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMF_RS07520 72befe8f8380e3e84cc94c63295b6813 408 SUPERFAMILY SSF53383 9 396 6.58E-105 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMF_RS07520 72befe8f8380e3e84cc94c63295b6813 408 Pfam PF00266 Aminotransferase class-V 11 372 1.1E-81 T 19-04-2016 IPR000192 Aminotransferase class V domain AMF_RS07520 72befe8f8380e3e84cc94c63295b6813 408 Gene3D G3DSA:3.90.1150.10 257 378 1.4E-44 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS07520 72befe8f8380e3e84cc94c63295b6813 408 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 8 407 7.0E-201 T 19-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 AMF_RS07520 72befe8f8380e3e84cc94c63295b6813 408 PANTHER PTHR11601:SF34 7 406 1.1E-236 T 19-04-2016 AMF_RS06325 40ef8adfe12a82ba1362fd617677c2f6 422 PIRSF PIRSF000447 2 422 7.9E-174 T 19-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 AMF_RS06325 40ef8adfe12a82ba1362fd617677c2f6 422 Gene3D G3DSA:3.40.47.10 4 270 2.1E-69 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMF_RS06325 40ef8adfe12a82ba1362fd617677c2f6 422 SUPERFAMILY SSF53901 5 262 1.5E-71 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMF_RS06325 40ef8adfe12a82ba1362fd617677c2f6 422 SMART SM00825 Beta-ketoacyl synthase 7 422 2.2E-15 T 19-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMF_RS06325 40ef8adfe12a82ba1362fd617677c2f6 422 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 6 257 8.7E-52 T 19-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal AMF_RS06325 40ef8adfe12a82ba1362fd617677c2f6 422 Gene3D G3DSA:3.40.47.10 274 421 1.1E-59 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMF_RS06325 40ef8adfe12a82ba1362fd617677c2f6 422 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 265 379 1.5E-40 T 19-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal AMF_RS06325 40ef8adfe12a82ba1362fd617677c2f6 422 SUPERFAMILY SSF53901 225 420 4.19E-70 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMF_RS06325 40ef8adfe12a82ba1362fd617677c2f6 422 PANTHER PTHR11712 6 419 6.5E-192 T 19-04-2016 AMF_RS06325 40ef8adfe12a82ba1362fd617677c2f6 422 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 6 419 3.4E-187 T 19-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 Pfam PF00106 short chain dehydrogenase 8 203 8.0E-43 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 SUPERFAMILY SSF51735 3 238 1.72E-56 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 4.2E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.2E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.2E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 4.2E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 4.2E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 4.2E-19 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 Gene3D G3DSA:3.40.50.720 2 237 7.5E-59 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMF_RS08655 e8de16e374ed2236717f294998ee8f9c 243 PANTHER PTHR24320 4 197 1.7E-38 T 19-04-2016 AMF_RS08755 d721843eebcbeccd8f291e2cec2898a6 122 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 10 110 21.158 T 19-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMF_RS08755 d721843eebcbeccd8f291e2cec2898a6 122 Pfam PF02410 Ribosomal silencing factor during starvation 16 109 1.5E-26 T 19-04-2016 AMF_RS08755 d721843eebcbeccd8f291e2cec2898a6 122 PANTHER PTHR21043 15 114 4.5E-31 T 19-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMF_RS08755 d721843eebcbeccd8f291e2cec2898a6 122 Gene3D G3DSA:3.30.460.10 12 111 1.7E-32 T 19-04-2016 AMF_RS08755 d721843eebcbeccd8f291e2cec2898a6 122 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 14 109 6.1E-31 T 19-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMF_RS08755 d721843eebcbeccd8f291e2cec2898a6 122 SUPERFAMILY SSF81301 10 115 2.45E-31 T 19-04-2016 AMF_RS08355 95a4fb43c16ba696d7d62ef2d89b7e01 134 Gene3D G3DSA:3.90.1030.10 1 122 1.2E-38 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08355 95a4fb43c16ba696d7d62ef2d89b7e01 134 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 121 23.876 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08355 95a4fb43c16ba696d7d62ef2d89b7e01 134 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08355 95a4fb43c16ba696d7d62ef2d89b7e01 134 Pfam PF01196 Ribosomal protein L17 20 121 8.0E-29 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08355 95a4fb43c16ba696d7d62ef2d89b7e01 134 PANTHER PTHR14413 1 123 1.9E-48 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08355 95a4fb43c16ba696d7d62ef2d89b7e01 134 SUPERFAMILY SSF64263 1 123 4.45E-40 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08355 95a4fb43c16ba696d7d62ef2d89b7e01 134 TIGRFAM TIGR00059 L17: ribosomal protein bL17 6 122 3.6E-33 T 19-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 SMART SM00861 560 753 1.2E-61 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 PANTHER PTHR23152 53 898 0.0 T 19-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 Gene3D G3DSA:3.40.50.970 128 502 2.5E-65 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 Pfam PF02779 Transketolase, pyrimidine binding domain 559 754 6.0E-65 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 758 898 3.2E-45 T 19-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 Gene3D G3DSA:3.40.50.970 561 762 7.6E-24 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 Pfam PF00676 Dehydrogenase E1 component 179 489 4.5E-49 T 19-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 50 897 8.8E-294 T 19-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 SUPERFAMILY SSF52518 129 505 4.91E-78 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 PIRSF PIRSF000157 1 899 0.0 T 19-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMF_RS06560 1d0242b58cd962509ebc47ec4552ed45 899 SUPERFAMILY SSF52518 555 759 2.36E-50 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 PANTHER PTHR22976:SF1 3 322 1.1E-146 T 19-04-2016 AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 219 309 4.9E-20 T 19-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 PANTHER PTHR22976 3 322 1.1E-146 T 19-04-2016 AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 Hamap MF_01694 Biotin synthase [bioB]. 4 312 42.33 T 19-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 SMART SM00729 42 254 2.4E-35 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 Gene3D G3DSA:3.20.20.70 4 312 4.7E-99 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 Pfam PF04055 Radical SAM superfamily 50 200 7.1E-15 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 SUPERFAMILY SSF102114 4 311 4.84E-87 T 19-04-2016 AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 SMART SM00876 219 311 2.5E-47 T 19-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 TIGRFAM TIGR00433 bioB: biotin synthase 13 309 3.0E-121 T 19-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 AMF_RS08730 848764aa4f049227eb19cccda7ddfa61 324 PIRSF PIRSF001619 1 318 6.3E-129 T 19-04-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 Pfam PF02357 Transcription termination factor nusG 9 112 1.1E-17 T 19-04-2016 IPR006645 NusG, N-terminal GO:0006355 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 SMART SM00738 7 116 2.1E-27 T 19-04-2016 IPR006645 NusG, N-terminal GO:0006355 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 SUPERFAMILY SSF50104 130 184 4.27E-12 T 19-04-2016 IPR008991 Translation protein SH3-like domain AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 Gene3D G3DSA:2.30.30.30 129 184 9.1E-18 T 19-04-2016 IPR014722 Ribosomal protein L2 domain 2 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 7 184 20.572 T 19-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 PANTHER PTHR30265 9 185 9.2E-36 T 19-04-2016 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 Gene3D G3DSA:3.30.70.940 9 116 1.3E-28 T 19-04-2016 IPR006645 NusG, N-terminal GO:0006355 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 PRINTS PR00338 Transcription termination factor NUSG signature 62 74 3.9E-8 T 19-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 PRINTS PR00338 Transcription termination factor NUSG signature 142 157 3.9E-8 T 19-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 PRINTS PR00338 Transcription termination factor NUSG signature 160 176 3.9E-8 T 19-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 SUPERFAMILY SSF82679 8 115 7.85E-28 T 19-04-2016 IPR006645 NusG, N-terminal GO:0006355 AMF_RS06000 247907ee0541072a7ca9f3c34c3fcd0e 186 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 10 184 1.5E-45 T 19-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMF_RS08710 0a7c1de230391fc60494affffb11a6a2 314 PANTHER PTHR30447 1 298 2.6E-104 T 19-04-2016 AMF_RS08710 0a7c1de230391fc60494affffb11a6a2 314 PANTHER PTHR30447:SF0 1 298 2.6E-104 T 19-04-2016 AMF_RS08710 0a7c1de230391fc60494affffb11a6a2 314 SUPERFAMILY SSF56655 1 302 1.65E-79 T 19-04-2016 AMF_RS08710 0a7c1de230391fc60494affffb11a6a2 314 Gene3D G3DSA:3.30.540.10 1 163 6.6E-52 T 19-04-2016 AMF_RS08710 0a7c1de230391fc60494affffb11a6a2 314 Gene3D G3DSA:3.30.540.10 164 300 8.0E-18 T 19-04-2016 AMF_RS08710 0a7c1de230391fc60494affffb11a6a2 314 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 300 4.6E-80 T 19-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMF_RS08710 0a7c1de230391fc60494affffb11a6a2 314 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 1 298 8.7E-107 T 19-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMF_RS08710 0a7c1de230391fc60494affffb11a6a2 314 PIRSF PIRSF004532 1 306 5.9E-102 T 19-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AMF_RS07585 8e8fe5b29123ac0101fe544d00525a12 201 PIRSF PIRSF005461 1 196 1.8E-65 T 19-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 AMF_RS07585 8e8fe5b29123ac0101fe544d00525a12 201 Gene3D G3DSA:3.40.50.150 7 185 2.0E-59 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07585 8e8fe5b29123ac0101fe544d00525a12 201 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 1 184 22.68 T 19-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 AMF_RS07585 8e8fe5b29123ac0101fe544d00525a12 201 Pfam PF01728 FtsJ-like methyltransferase 8 184 1.9E-55 T 19-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AMF_RS07585 8e8fe5b29123ac0101fe544d00525a12 201 SUPERFAMILY SSF53335 7 186 1.45E-41 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07585 8e8fe5b29123ac0101fe544d00525a12 201 PANTHER PTHR10920 2 188 3.4E-81 T 19-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 Gene3D G3DSA:3.40.50.2300 706 824 1.2E-28 T 19-04-2016 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 Pfam PF00072 Response regulator receiver domain 709 819 8.0E-20 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 548 670 1.8E-17 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 Gene3D G3DSA:3.30.565.10 503 671 5.5E-35 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 SMART SM00448 707 819 1.6E-16 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 SMART SM00388 437 503 1.2E-9 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 SMART SM00387 544 673 1.4E-22 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 PANTHER PTHR24423 8 15 1.0E-126 T 19-04-2016 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 PANTHER PTHR24423 318 577 1.0E-126 T 19-04-2016 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 PANTHER PTHR24423 594 823 1.0E-126 T 19-04-2016 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 Gene3D G3DSA:3.30.450.20 317 431 1.2E-4 T 19-04-2016 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 Pfam PF13426 PAS domain 332 391 0.098 T 19-04-2016 IPR000014 PAS domain AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 Pfam PF13426 PAS domain 230 305 0.042 T 19-04-2016 IPR000014 PAS domain AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 Gene3D G3DSA:1.10.287.130 432 499 5.7E-8 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 657 670 8.4E-17 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 620 630 8.4E-17 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 633 651 8.4E-17 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 PRINTS PR00344 Bacterial sensor protein C-terminal signature 602 616 8.4E-17 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 Pfam PF00512 His Kinase A (phospho-acceptor) domain 439 501 3.0E-8 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 PANTHER PTHR24423:SF458 8 15 1.0E-126 T 19-04-2016 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 PANTHER PTHR24423:SF458 318 577 1.0E-126 T 19-04-2016 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 PANTHER PTHR24423:SF458 594 823 1.0E-126 T 19-04-2016 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 SUPERFAMILY SSF47384 429 500 9.22E-12 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 SUPERFAMILY SSF52172 705 824 9.96E-26 T 19-04-2016 IPR011006 CheY-like superfamily AMF_RS06900 fc520ca1872809514a496c4411b919a5 827 SUPERFAMILY SSF55874 493 673 9.82E-37 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS07405 e7afc08e9a38b19451fb460ff3b0039d 395 Gene3D G3DSA:1.10.645.10 10 387 1.7E-63 T 19-04-2016 IPR029014 NiFe hydrogenase-like AMF_RS07405 e7afc08e9a38b19451fb460ff3b0039d 395 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 395 48.795 T 19-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 AMF_RS07405 e7afc08e9a38b19451fb460ff3b0039d 395 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 48 59 - T 19-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 AMF_RS07405 e7afc08e9a38b19451fb460ff3b0039d 395 SUPERFAMILY SSF56762 21 395 4.32E-141 T 19-04-2016 IPR029014 NiFe hydrogenase-like AMF_RS07405 e7afc08e9a38b19451fb460ff3b0039d 395 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 125 395 5.9E-126 T 19-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 AMF_RS07405 e7afc08e9a38b19451fb460ff3b0039d 395 PANTHER PTHR11993:SF10 3 390 1.2E-246 T 19-04-2016 AMF_RS07405 e7afc08e9a38b19451fb460ff3b0039d 395 PANTHER PTHR11993 3 390 1.2E-246 T 19-04-2016 AMF_RS07405 e7afc08e9a38b19451fb460ff3b0039d 395 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 11 395 1.4E-180 T 19-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 AMF_RS09710 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 SUPERFAMILY SSF143968 328 492 1.7E-62 T 19-04-2016 AMF_RS09710 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 11 434 1.6E-151 T 19-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 AMF_RS09710 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 PANTHER PTHR30108:SF1 1 494 1.1E-212 T 19-04-2016 AMF_RS09710 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 Gene3D G3DSA:1.20.5.570 460 492 7.2E-10 T 19-04-2016 AMF_RS09710 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 PANTHER PTHR30108 1 494 1.1E-212 T 19-04-2016 AMF_RS09710 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 8 460 6.9E-141 T 19-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 AMF_RS09710 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 Gene3D G3DSA:3.40.1670.10 343 459 1.3E-48 T 19-04-2016 AMF_RS09710 c15fa0a89e2ca3e5a748f28a6e95d6f6 494 SUPERFAMILY SSF50475 4 327 1.29E-106 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMF_RS09270 60c15330568a840241ae362bd51ab38f 227 Gene3D G3DSA:3.40.50.300 1 196 2.2E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09270 60c15330568a840241ae362bd51ab38f 227 Pfam PF13500 AAA domain 4 173 4.0E-27 T 19-04-2016 AMF_RS09270 60c15330568a840241ae362bd51ab38f 227 PIRSF PIRSF006755 1 205 9.3E-36 T 19-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 AMF_RS09270 60c15330568a840241ae362bd51ab38f 227 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 199 21.121 T 19-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 AMF_RS09270 60c15330568a840241ae362bd51ab38f 227 PANTHER PTHR21343:SF0 1 171 1.5E-33 T 19-04-2016 AMF_RS09270 60c15330568a840241ae362bd51ab38f 227 SUPERFAMILY SSF52540 1 196 5.84E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09270 60c15330568a840241ae362bd51ab38f 227 PANTHER PTHR21343 1 171 1.5E-33 T 19-04-2016 AMF_RS09270 60c15330568a840241ae362bd51ab38f 227 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 171 2.2E-33 T 19-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 AMF_RS06805 f1affe6d91f35d2d6e97e13e5375fc19 253 Pfam PF00459 Inositol monophosphatase family 49 206 1.6E-16 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMF_RS06805 f1affe6d91f35d2d6e97e13e5375fc19 253 Gene3D G3DSA:3.30.540.10 8 162 5.6E-22 T 19-04-2016 AMF_RS06805 f1affe6d91f35d2d6e97e13e5375fc19 253 SUPERFAMILY SSF56655 7 247 2.23E-35 T 19-04-2016 AMF_RS06805 f1affe6d91f35d2d6e97e13e5375fc19 253 PRINTS PR00377 Inositol monophosphatase superfamily signature 84 100 3.47E-7 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMF_RS06805 f1affe6d91f35d2d6e97e13e5375fc19 253 PRINTS PR00377 Inositol monophosphatase superfamily signature 179 200 3.47E-7 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMF_RS06805 f1affe6d91f35d2d6e97e13e5375fc19 253 PRINTS PR00377 Inositol monophosphatase superfamily signature 133 156 3.47E-7 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMF_RS06805 f1affe6d91f35d2d6e97e13e5375fc19 253 PANTHER PTHR20854 83 204 2.1E-12 T 19-04-2016 IPR000760 Inositol monophosphatase GO:0046854 AMF_RS10120 64d2ad34ab08d743c85bde0079453f58 196 SUPERFAMILY SSF69765 21 182 3.4E-56 T 19-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS10120 64d2ad34ab08d743c85bde0079453f58 196 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 22 181 29.758 T 19-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS10120 64d2ad34ab08d743c85bde0079453f58 196 PANTHER PTHR32125 21 178 6.4E-39 T 19-04-2016 AMF_RS10120 64d2ad34ab08d743c85bde0079453f58 196 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 60 75 - T 19-04-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS10120 64d2ad34ab08d743c85bde0079453f58 196 Gene3D G3DSA:3.30.1330.50 20 182 1.8E-60 T 19-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS10120 64d2ad34ab08d743c85bde0079453f58 196 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 23 179 8.5E-54 T 19-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS10120 64d2ad34ab08d743c85bde0079453f58 196 Pfam PF02542 YgbB family 22 179 5.8E-54 T 19-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS07975 42fbf602f2a9e1417420d4aca2f8e3c5 196 SUPERFAMILY SSF52972 6 187 1.5E-54 T 19-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like AMF_RS07975 42fbf602f2a9e1417420d4aca2f8e3c5 196 Gene3D G3DSA:3.90.950.10 7 187 4.0E-57 T 19-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like AMF_RS07975 42fbf602f2a9e1417420d4aca2f8e3c5 196 TIGRFAM TIGR00172 maf: septum formation protein Maf 7 186 4.6E-40 T 19-04-2016 IPR003697 Maf-like protein GO:0005737 AMF_RS07975 42fbf602f2a9e1417420d4aca2f8e3c5 196 Pfam PF02545 Maf-like protein 7 187 2.5E-48 T 19-04-2016 IPR003697 Maf-like protein GO:0005737 AMF_RS07975 42fbf602f2a9e1417420d4aca2f8e3c5 196 PIRSF PIRSF006305 1 193 1.2E-46 T 19-04-2016 IPR003697 Maf-like protein GO:0005737 AMF_RS07975 42fbf602f2a9e1417420d4aca2f8e3c5 196 Hamap MF_00528 Septum formation protein Maf [maf]. 6 193 26.571 T 19-04-2016 IPR003697 Maf-like protein GO:0005737 AMF_RS06895 766ecec7e7dba9d8ea4feab4d8a1591c 118 SUPERFAMILY SSF54913 3 102 4.08E-30 T 19-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMF_RS06895 766ecec7e7dba9d8ea4feab4d8a1591c 118 Pfam PF03091 CutA1 divalent ion tolerance protein 7 102 4.9E-27 T 19-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 AMF_RS06895 766ecec7e7dba9d8ea4feab4d8a1591c 118 Gene3D G3DSA:3.30.70.830 4 106 1.3E-30 T 19-04-2016 AMF_RS06895 766ecec7e7dba9d8ea4feab4d8a1591c 118 PANTHER PTHR23419 5 112 7.4E-28 T 19-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 AMF_RS07820 b0ffbb2495fbca2d4ec15cff571840d6 200 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 161 2.2E-30 T 19-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 AMF_RS07820 b0ffbb2495fbca2d4ec15cff571840d6 200 PANTHER PTHR33269 1 193 2.8E-37 T 19-04-2016 AMF_RS09110 199646dff8195e935acf531a1e003c52 177 Gene3D G3DSA:2.160.10.10 15 176 1.7E-39 T 19-04-2016 AMF_RS09110 199646dff8195e935acf531a1e003c52 177 SUPERFAMILY SSF51161 14 174 4.16E-40 T 19-04-2016 IPR011004 Trimeric LpxA-like AMF_RS09110 199646dff8195e935acf531a1e003c52 177 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 25 54 0.0017 T 19-04-2016 IPR001451 Hexapeptide repeat AMF_RS07865 48a7b143170f3f3d566198d95bda7615 275 Pfam PF01218 Coproporphyrinogen III oxidase 9 275 9.1E-97 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS07865 48a7b143170f3f3d566198d95bda7615 275 Gene3D G3DSA:3.40.1500.10 2 275 6.9E-110 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS07865 48a7b143170f3f3d566198d95bda7615 275 SUPERFAMILY SSF102886 2 275 1.1E-111 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS07865 48a7b143170f3f3d566198d95bda7615 275 PIRSF PIRSF000166 1 275 5.9E-113 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS07865 48a7b143170f3f3d566198d95bda7615 275 PRINTS PR00073 Coprogen oxidase signature 35 51 3.2E-45 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS07865 48a7b143170f3f3d566198d95bda7615 275 PRINTS PR00073 Coprogen oxidase signature 260 275 3.2E-45 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS07865 48a7b143170f3f3d566198d95bda7615 275 PRINTS PR00073 Coprogen oxidase signature 123 145 3.2E-45 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS07865 48a7b143170f3f3d566198d95bda7615 275 PRINTS PR00073 Coprogen oxidase signature 160 189 3.2E-45 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS07865 48a7b143170f3f3d566198d95bda7615 275 PRINTS PR00073 Coprogen oxidase signature 232 259 3.2E-45 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS07865 48a7b143170f3f3d566198d95bda7615 275 PANTHER PTHR10755 5 275 3.2E-120 T 19-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS09500 8cc531cda08633dbe5f63bdaf1773129 601 Gene3D G3DSA:3.90.1310.10 145 254 2.1E-18 T 19-04-2016 AMF_RS09500 8cc531cda08633dbe5f63bdaf1773129 601 Pfam PF00905 Penicillin binding protein transpeptidase domain 266 581 3.9E-53 T 19-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMF_RS09500 8cc531cda08633dbe5f63bdaf1773129 601 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 26 586 1.4E-152 T 19-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 AMF_RS09500 8cc531cda08633dbe5f63bdaf1773129 601 SUPERFAMILY SSF56601 250 586 7.09E-79 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMF_RS09500 8cc531cda08633dbe5f63bdaf1773129 601 PANTHER PTHR30627:SF2 13 598 1.3E-143 T 19-04-2016 AMF_RS09500 8cc531cda08633dbe5f63bdaf1773129 601 PANTHER PTHR30627 13 598 1.3E-143 T 19-04-2016 AMF_RS09500 8cc531cda08633dbe5f63bdaf1773129 601 SUPERFAMILY SSF56519 63 248 1.14E-36 T 19-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMF_RS09500 8cc531cda08633dbe5f63bdaf1773129 601 Gene3D G3DSA:3.40.710.10 255 587 3.3E-82 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMF_RS09500 8cc531cda08633dbe5f63bdaf1773129 601 Pfam PF03717 Penicillin-binding Protein dimerisation domain 71 234 7.9E-24 T 19-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMF_RS06165 74b084b49a1460359a28e652bbc4a67c 65 Gene3D G3DSA:1.10.10.600 1 64 1.8E-28 T 19-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMF_RS06165 74b084b49a1460359a28e652bbc4a67c 65 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 2 64 8.3E-32 T 19-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMF_RS06165 74b084b49a1460359a28e652bbc4a67c 65 Pfam PF04384 Iron-sulphur cluster assembly 1 63 1.7E-28 T 19-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMF_RS06165 74b084b49a1460359a28e652bbc4a67c 65 PANTHER PTHR37532 1 65 7.3E-18 T 19-04-2016 AMF_RS06165 74b084b49a1460359a28e652bbc4a67c 65 PANTHER PTHR37532:SF1 1 65 7.3E-18 T 19-04-2016 AMF_RS06165 74b084b49a1460359a28e652bbc4a67c 65 PIRSF PIRSF039003 1 64 7.7E-32 T 19-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMF_RS06165 74b084b49a1460359a28e652bbc4a67c 65 SUPERFAMILY SSF140319 1 62 2.09E-24 T 19-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 PANTHER PTHR30050:SF2 23 471 1.0E-181 T 19-04-2016 AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 Pfam PF00308 Bacterial dnaA protein 135 353 2.9E-87 T 19-04-2016 IPR013317 Chromosomal replication initiator protein DnaA AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 SMART SM00760 380 449 1.2E-38 T 19-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 SUPERFAMILY SSF52540 134 349 1.38E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 23 471 31.357 T 19-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 ProSitePatterns PS01008 DnaA protein signature. 430 449 - T 19-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 430 449 3.7E-47 T 19-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 268 295 3.7E-47 T 19-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 234 248 3.7E-47 T 19-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 202 216 3.7E-47 T 19-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 170 190 3.7E-47 T 19-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 26 470 2.0E-162 T 19-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 PANTHER PTHR30050 23 471 1.0E-181 T 19-04-2016 AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 SUPERFAMILY SSF48295 367 470 4.71E-36 T 19-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 Gene3D G3DSA:1.10.1750.10 372 470 2.0E-36 T 19-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 Gene3D G3DSA:1.10.8.60 304 371 4.8E-28 T 19-04-2016 AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 Gene3D G3DSA:3.40.50.300 130 300 1.8E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 Pfam PF11638 DnaA N-terminal domain 24 85 1.8E-16 T 19-04-2016 IPR024633 DnaA N-terminal domain AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 SMART SM00382 169 297 5.3E-6 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS06655 0b711dc48342aa99e86eb5dea9cda3b5 471 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 383 449 4.0E-28 T 19-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMF_RS07645 b26cbc5cbf790070879df17173c2d193 244 PANTHER PTHR30027:SF3 11 238 2.9E-42 T 19-04-2016 AMF_RS07645 b26cbc5cbf790070879df17173c2d193 244 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 13 240 8.5E-38 T 19-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMF_RS07645 b26cbc5cbf790070879df17173c2d193 244 PANTHER PTHR30027 11 238 2.9E-42 T 19-04-2016 AMF_RS07645 b26cbc5cbf790070879df17173c2d193 244 SUPERFAMILY SSF75217 86 240 3.66E-39 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMF_RS07645 b26cbc5cbf790070879df17173c2d193 244 Gene3D G3DSA:3.40.1280.10 13 239 3.7E-57 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMF_RS07645 b26cbc5cbf790070879df17173c2d193 244 SUPERFAMILY SSF88697 12 78 2.44E-14 T 19-04-2016 IPR015947 PUA-like domain AMF_RS07645 b26cbc5cbf790070879df17173c2d193 244 PIRSF PIRSF015601 12 243 1.5E-53 T 19-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMF_RS07645 b26cbc5cbf790070879df17173c2d193 244 Pfam PF04452 RNA methyltransferase 27 238 2.5E-50 T 19-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 Gene3D G3DSA:1.10.287.130 457 528 4.6E-7 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 PANTHER PTHR24423:SF471 341 659 1.9E-58 T 19-04-2016 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 Pfam PF00512 His Kinase A (phospho-acceptor) domain 463 530 6.9E-8 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 PIRSF PIRSF037532 4 685 3.1E-187 T 19-04-2016 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 SMART SM00387 572 684 1.4E-23 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 SMART SM00304 288 343 2.9E-5 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 PANTHER PTHR24423 341 659 1.9E-58 T 19-04-2016 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 SUPERFAMILY SSF55874 530 675 4.45E-27 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 573 680 1.2E-15 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 SUPERFAMILY SSF47384 457 530 5.69E-9 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 SMART SM00388 461 532 6.5E-7 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 Gene3D G3DSA:3.30.565.10 537 674 1.2E-29 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 Pfam PF00672 HAMP domain 269 338 2.8E-7 T 19-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 PRINTS PR00344 Bacterial sensor protein C-terminal signature 632 642 5.7E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 PRINTS PR00344 Bacterial sensor protein C-terminal signature 614 628 5.7E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMF_RS05620 f913dc9c73a49df8d096ba9f979d7919 690 PRINTS PR00344 Bacterial sensor protein C-terminal signature 643 661 5.7E-10 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMF_RS09010 2779be667eb0374aac6afc2ff24b3186 127 Pfam PF04956 TrbC/VIRB2 family 5 100 1.5E-15 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS07390 fe6aaaaf9642a924d62bdaa5f3e1c506 426 Pfam PF01523 Putative modulator of DNA gyrase 3 294 1.2E-45 T 19-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMF_RS07390 fe6aaaaf9642a924d62bdaa5f3e1c506 426 SUPERFAMILY SSF111283 3 424 4.84E-107 T 19-04-2016 AMF_RS07390 fe6aaaaf9642a924d62bdaa5f3e1c506 426 PANTHER PTHR30624 2 426 4.1E-106 T 19-04-2016 AMF_RS07390 fe6aaaaf9642a924d62bdaa5f3e1c506 426 PANTHER PTHR30624:SF1 2 426 4.1E-106 T 19-04-2016 AMF_RS07400 2b92cde8c1136df84fa3bc4c03e3aa78 287 PRINTS PR00126 ATP synthase gamma subunit signature 264 285 8.8E-27 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMF_RS07400 2b92cde8c1136df84fa3bc4c03e3aa78 287 PRINTS PR00126 ATP synthase gamma subunit signature 161 178 8.8E-27 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMF_RS07400 2b92cde8c1136df84fa3bc4c03e3aa78 287 PRINTS PR00126 ATP synthase gamma subunit signature 233 252 8.8E-27 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMF_RS07400 2b92cde8c1136df84fa3bc4c03e3aa78 287 PRINTS PR00126 ATP synthase gamma subunit signature 65 84 8.8E-27 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMF_RS07400 2b92cde8c1136df84fa3bc4c03e3aa78 287 SUPERFAMILY SSF52943 2 286 1.11E-62 T 19-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain AMF_RS07400 2b92cde8c1136df84fa3bc4c03e3aa78 287 Gene3D G3DSA:3.40.1380.10 56 184 3.2E-17 T 19-04-2016 AMF_RS07400 2b92cde8c1136df84fa3bc4c03e3aa78 287 Pfam PF00231 ATP synthase 3 286 2.1E-59 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMF_RS07400 2b92cde8c1136df84fa3bc4c03e3aa78 287 PANTHER PTHR11693 1 287 8.8E-56 T 19-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMF_RS07400 2b92cde8c1136df84fa3bc4c03e3aa78 287 Gene3D G3DSA:1.10.287.80 220 286 1.4E-39 T 19-04-2016 AMF_RS07400 2b92cde8c1136df84fa3bc4c03e3aa78 287 Gene3D G3DSA:1.10.287.80 2 36 1.4E-39 T 19-04-2016 AMF_RS05220 cdffd2e38d212984c8d57884e8bf18e8 185 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 116 122 - T 19-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMF_RS05220 cdffd2e38d212984c8d57884e8bf18e8 185 PANTHER PTHR18895 23 139 5.0E-18 T 19-04-2016 AMF_RS05220 cdffd2e38d212984c8d57884e8bf18e8 185 PIRSF PIRSF004553 1 182 2.1E-38 T 19-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AMF_RS05220 cdffd2e38d212984c8d57884e8bf18e8 185 Gene3D G3DSA:3.40.50.150 2 180 1.4E-37 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS05220 cdffd2e38d212984c8d57884e8bf18e8 185 Pfam PF03602 Conserved hypothetical protein 95 2 178 1.7E-30 T 19-04-2016 AMF_RS05220 cdffd2e38d212984c8d57884e8bf18e8 185 SUPERFAMILY SSF53335 2 157 1.25E-32 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS05220 cdffd2e38d212984c8d57884e8bf18e8 185 PANTHER PTHR18895:SF60 23 139 5.0E-18 T 19-04-2016 AMF_RS09125 61fcc3693550e72ac678f9c5fa058eab 409 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 12 185 8.3E-7 T 19-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AMF_RS09125 61fcc3693550e72ac678f9c5fa058eab 409 Pfam PF13899 Thioredoxin-like 294 369 2.9E-11 T 19-04-2016 AMF_RS09125 61fcc3693550e72ac678f9c5fa058eab 409 PANTHER PTHR32234:SF3 1 405 1.7E-106 T 19-04-2016 AMF_RS09125 61fcc3693550e72ac678f9c5fa058eab 409 SUPERFAMILY SSF52833 286 396 2.89E-13 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS09125 61fcc3693550e72ac678f9c5fa058eab 409 PANTHER PTHR32234 1 405 1.7E-106 T 19-04-2016 AMF_RS09125 61fcc3693550e72ac678f9c5fa058eab 409 Gene3D G3DSA:3.40.30.10 294 399 1.1E-11 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS09510 3e16b15bfb976a6fd0cdd849050f13ab 126 PANTHER PTHR34039 8 105 2.2E-14 T 19-04-2016 AMF_RS09510 3e16b15bfb976a6fd0cdd849050f13ab 126 Gene3D G3DSA:3.40.1350.10 19 124 1.3E-20 T 19-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 AMF_RS09510 3e16b15bfb976a6fd0cdd849050f13ab 126 SUPERFAMILY SSF52980 15 124 1.61E-19 T 19-04-2016 IPR011335 Restriction endonuclease type II-like AMF_RS09510 3e16b15bfb976a6fd0cdd849050f13ab 126 PANTHER PTHR34039:SF1 8 105 2.2E-14 T 19-04-2016 AMF_RS09510 3e16b15bfb976a6fd0cdd849050f13ab 126 Pfam PF02021 Uncharacterised protein family UPF0102 24 103 6.8E-13 T 19-04-2016 IPR003509 Uncharacterised protein family UPF0102 AMF_RS06685 1d4064723738da86d3797a1b2d2b49be 197 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 2 186 7.0E-44 T 19-04-2016 IPR006070 YrdC-like domain GO:0003725 AMF_RS06685 1d4064723738da86d3797a1b2d2b49be 197 PANTHER PTHR17490 2 190 6.3E-47 T 19-04-2016 AMF_RS06685 1d4064723738da86d3797a1b2d2b49be 197 Pfam PF01300 Telomere recombination 6 178 1.1E-43 T 19-04-2016 IPR006070 YrdC-like domain GO:0003725 AMF_RS06685 1d4064723738da86d3797a1b2d2b49be 197 SUPERFAMILY SSF55821 2 183 1.5E-46 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMF_RS06685 1d4064723738da86d3797a1b2d2b49be 197 Gene3D G3DSA:3.90.870.10 2 189 1.0E-49 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMF_RS08265 cf346beee39c02b8d9d59d45c820cd9b 145 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 45 82 - T 19-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMF_RS08265 cf346beee39c02b8d9d59d45c820cd9b 145 Gene3D G3DSA:3.40.140.10 1 136 6.7E-44 T 19-04-2016 AMF_RS08265 cf346beee39c02b8d9d59d45c820cd9b 145 PANTHER PTHR11079 1 142 9.3E-36 T 19-04-2016 AMF_RS08265 cf346beee39c02b8d9d59d45c820cd9b 145 SUPERFAMILY SSF53927 1 138 9.37E-41 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMF_RS08265 cf346beee39c02b8d9d59d45c820cd9b 145 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 1 139 39.091 T 19-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 AMF_RS08265 cf346beee39c02b8d9d59d45c820cd9b 145 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 93 1.5E-22 T 19-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 AMF_RS06795 59c92171759705486246d529f75f8684 356 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 4 139 6.1E-21 T 19-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS06795 59c92171759705486246d529f75f8684 356 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 4 354 25.848 T 19-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS06795 59c92171759705486246d529f75f8684 356 SUPERFAMILY SSF53756 2 352 3.14E-81 T 19-04-2016 AMF_RS06795 59c92171759705486246d529f75f8684 356 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 180 344 1.7E-34 T 19-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS06795 59c92171759705486246d529f75f8684 356 Gene3D G3DSA:3.40.50.2000 1 183 3.1E-37 T 19-04-2016 AMF_RS06795 59c92171759705486246d529f75f8684 356 Gene3D G3DSA:3.40.50.2000 184 354 7.2E-29 T 19-04-2016 AMF_RS06795 59c92171759705486246d529f75f8684 356 PANTHER PTHR21015:SF22 1 350 2.4E-66 T 19-04-2016 AMF_RS06795 59c92171759705486246d529f75f8684 356 PANTHER PTHR21015 1 350 2.4E-66 T 19-04-2016 AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 SUPERFAMILY SSF52540 797 823 2.0E-96 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 SUPERFAMILY SSF52540 306 758 2.0E-96 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 SUPERFAMILY SSF52540 107 171 2.0E-96 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 SUPERFAMILY SSF52540 5 71 2.0E-96 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 Pfam PF13361 UvrD-like helicase C-terminal domain 437 818 8.8E-14 T 19-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 Gene3D G3DSA:1.10.486.10 587 716 2.2E-4 T 19-04-2016 AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 Gene3D G3DSA:3.40.50.300 441 576 2.6E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 Gene3D G3DSA:3.40.50.300 726 851 2.6E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 Gene3D G3DSA:3.40.50.300 115 174 9.6E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 Gene3D G3DSA:3.40.50.300 316 428 9.6E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 Gene3D G3DSA:3.40.50.300 5 67 9.6E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 PANTHER PTHR11070 107 201 3.8E-71 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 PANTHER PTHR11070 281 489 3.8E-71 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 PANTHER PTHR11070 514 686 3.8E-71 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 PANTHER PTHR11070 9 80 3.8E-71 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 PANTHER PTHR11070 708 772 3.8E-71 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 PANTHER PTHR11070 796 817 3.8E-71 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMF_RS08570 f55ca5ee70893091219cc7eb794a32f9 867 Pfam PF00580 UvrD/REP helicase N-terminal domain 9 425 9.0E-47 T 19-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 AMF_RS07175 b578853a4247894e306709e5856094f0 117 Gene3D G3DSA:3.30.1130.10 4 101 1.5E-18 T 19-04-2016 AMF_RS07175 b578853a4247894e306709e5856094f0 117 SUPERFAMILY SSF55620 5 110 6.12E-22 T 19-04-2016 AMF_RS07175 b578853a4247894e306709e5856094f0 117 TIGRFAM TIGR00526 folB_dom: FolB domain 4 110 4.5E-18 T 19-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMF_RS07175 b578853a4247894e306709e5856094f0 117 Pfam PF02152 Dihydroneopterin aldolase 6 102 2.8E-17 T 19-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMF_RS07175 b578853a4247894e306709e5856094f0 117 SMART SM00905 5 109 2.0E-22 T 19-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Gene3D G3DSA:3.30.420.10 430 466 4.6E-4 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 ProSitePatterns PS00447 DNA polymerase family A signature. 680 699 - T 19-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 SMART SM00482 614 814 1.2E-94 T 19-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 PANTHER PTHR10133 10 855 8.1E-294 T 19-04-2016 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Gene3D G3DSA:1.10.150.20 640 744 7.4E-30 T 19-04-2016 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 265 1.9E-27 T 19-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Gene3D G3DSA:1.20.1060.10 470 591 6.3E-31 T 19-04-2016 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 SUPERFAMILY SSF56672 446 849 2.67E-137 T 19-04-2016 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 SMART SM00279 173 208 2.3E-12 T 19-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 SMART SM00475 7 262 3.2E-111 T 19-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 TIGRFAM TIGR00593 pola: DNA polymerase I 10 849 1.6E-264 T 19-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 SUPERFAMILY SSF88723 6 170 7.36E-50 T 19-04-2016 IPR029060 PIN domain-like AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 PRINTS PR00868 DNA-polymerase family A (pol I) signature 583 605 1.3E-63 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 PRINTS PR00868 DNA-polymerase family A (pol I) signature 717 728 1.3E-63 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 PRINTS PR00868 DNA-polymerase family A (pol I) signature 628 651 1.3E-63 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 PRINTS PR00868 DNA-polymerase family A (pol I) signature 658 671 1.3E-63 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 PRINTS PR00868 DNA-polymerase family A (pol I) signature 680 705 1.3E-63 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 PRINTS PR00868 DNA-polymerase family A (pol I) signature 771 787 1.3E-63 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 PRINTS PR00868 DNA-polymerase family A (pol I) signature 606 621 1.3E-63 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 PRINTS PR00868 DNA-polymerase family A (pol I) signature 739 750 1.3E-63 T 19-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Pfam PF00476 DNA polymerase family A 476 847 3.9E-139 T 19-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Gene3D G3DSA:1.10.150.20 186 246 2.0E-26 T 19-04-2016 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 SUPERFAMILY SSF53098 332 443 4.4E-10 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 8.9E-47 T 19-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Gene3D G3DSA:3.30.420.10 331 425 3.9E-8 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Gene3D G3DSA:3.40.50.1010 8 185 4.8E-59 T 19-04-2016 IPR029060 PIN domain-like AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Gene3D G3DSA:3.30.70.370 592 639 3.2E-59 T 19-04-2016 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 Gene3D G3DSA:3.30.70.370 745 849 3.2E-59 T 19-04-2016 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 PANTHER PTHR10133:SF27 10 855 8.1E-294 T 19-04-2016 AMF_RS09565 630fc02e3314b46ed6976534103b2c4a 855 SUPERFAMILY SSF47807 171 286 3.89E-29 T 19-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 SUPERFAMILY SSF51556 78 388 4.02E-99 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 SUPERFAMILY SSF51338 23 77 2.42E-22 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 SUPERFAMILY SSF51338 388 444 2.42E-22 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 Pfam PF01979 Amidohydrolase family 74 442 2.5E-25 T 19-04-2016 IPR006680 Amidohydrolase-related GO:0016787 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 PANTHER PTHR11647 24 443 2.5E-151 T 19-04-2016 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 ProSitePatterns PS00482 Dihydroorotase signature 1. 81 89 - T 19-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 Gene3D G3DSA:3.20.20.140 92 409 1.4E-104 T 19-04-2016 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 Hamap MF_00220_B Dihydroorotase [pyrC]. 19 446 39.833 T 19-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 Gene3D G3DSA:2.30.40.10 24 91 8.5E-14 T 19-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 ProSitePatterns PS00483 Dihydroorotase signature 2. 325 336 - T 19-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 64 443 3.0E-123 T 19-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS08625 e3b1473fd3d6b74b898cbafd757ae0ed 446 PANTHER PTHR11647:SF70 24 443 2.5E-151 T 19-04-2016 AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 Gene3D G3DSA:2.30.22.10 149 206 6.7E-21 T 19-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 SUPERFAMILY SSF51064 151 206 2.62E-16 T 19-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 Hamap MF_01151 Protein GrpE [grpE]. 58 205 16.426 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 Gene3D G3DSA:3.90.20.20 55 148 8.8E-20 T 19-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 SUPERFAMILY SSF58014 62 149 2.48E-19 T 19-04-2016 AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 PANTHER PTHR21237 62 208 6.2E-40 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 PRINTS PR00773 GrpE protein signature 106 121 8.7E-18 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 PRINTS PR00773 GrpE protein signature 157 172 8.7E-18 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 PRINTS PR00773 GrpE protein signature 78 94 8.7E-18 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 PRINTS PR00773 GrpE protein signature 184 203 8.7E-18 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMF_RS05125 f3ed76b343cf56f50d2567efcb344c50 211 Pfam PF01025 GrpE 55 205 5.9E-43 T 19-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 94 197 1.3E-33 T 19-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 SUPERFAMILY SSF54719 89 201 1.57E-42 T 19-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 19-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 SUPERFAMILY SSF46609 1 87 1.83E-25 T 19-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 PANTHER PTHR11404 1 202 4.3E-87 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 PIRSF PIRSF000349 1 204 9.6E-75 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 PRINTS PR01703 Manganese superoxide dismutase signature 24 37 7.4E-15 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 7.4E-15 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 PRINTS PR01703 Manganese superoxide dismutase signature 70 83 7.4E-15 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 PRINTS PR01703 Manganese superoxide dismutase signature 123 131 7.4E-15 T 19-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 PANTHER PTHR11404:SF8 1 202 4.3E-87 T 19-04-2016 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 Gene3D G3DSA:1.10.287.990 19 87 3.0E-17 T 19-04-2016 AMF_RS08065 915a2ceb5f542301aadd4d1c1e20bed7 204 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 87 5.3E-24 T 19-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 SMART SM00889 465 583 1.1E-61 T 19-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Pfam PF00009 Elongation factor Tu GTP binding domain 1 266 8.5E-67 T 19-04-2016 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Gene3D G3DSA:3.30.70.870 391 465 4.0E-33 T 19-04-2016 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Hamap MF_00054_B Elongation factor G [fusA]. 1 675 102.413 T 19-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Gene3D G3DSA:2.40.30.10 291 390 2.3E-33 T 19-04-2016 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 SUPERFAMILY SSF52540 1 266 5.14E-102 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 SUPERFAMILY SSF54980 387 465 1.91E-22 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Gene3D G3DSA:3.40.50.300 1 271 1.2E-96 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Gene3D G3DSA:3.30.230.10 469 587 7.6E-46 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 36 51 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Gene3D G3DSA:3.30.70.240 588 674 5.3E-30 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 675 0.0 T 19-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Pfam PF14492 Elongation Factor G, domain II 389 462 6.3E-31 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 PANTHER PTHR23115:SF66 1 162 0.0 T 19-04-2016 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 PANTHER PTHR23115:SF66 288 675 0.0 T 19-04-2016 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 PANTHER PTHR23115:SF66 239 267 0.0 T 19-04-2016 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 SMART SM00838 585 672 1.5E-47 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 SUPERFAMILY SSF50447 249 389 4.62E-33 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Pfam PF00679 Elongation factor G C-terminus 585 670 1.3E-28 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Pfam PF03144 Elongation factor Tu domain 2 309 376 2.8E-11 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 SUPERFAMILY SSF54211 464 584 7.59E-41 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 SUPERFAMILY SSF54980 585 673 2.16E-27 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 PRINTS PR00315 GTP-binding elongation factor signature 63 73 2.1E-9 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 PRINTS PR00315 GTP-binding elongation factor signature 115 124 2.1E-9 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 PRINTS PR00315 GTP-binding elongation factor signature 43 51 2.1E-9 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 PRINTS PR00315 GTP-binding elongation factor signature 79 90 2.1E-9 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 165 7.1E-31 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 PANTHER PTHR23115 1 162 0.0 T 19-04-2016 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 PANTHER PTHR23115 288 675 0.0 T 19-04-2016 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 PANTHER PTHR23115 239 267 0.0 T 19-04-2016 AMF_RS05980 8881af81409856aa6142ff9934fbbda5 675 Pfam PF03764 Elongation factor G, domain IV 464 582 3.5E-41 T 19-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF52335 941 1078 1.27E-37 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 PANTHER PTHR11405:SF5 1 1077 0.0 T 19-04-2016 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Pfam PF02142 MGS-like domain 963 1046 9.6E-17 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF48108 396 546 2.35E-44 T 19-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1058 0.0 T 19-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:1.10.1030.10 400 533 1.1E-43 T 19-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.40.50.20 4 108 1.3E-40 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 SMART SM00851 961 1047 2.0E-29 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF52440 1 127 1.58E-45 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.4E-62 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.4E-62 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.4E-62 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 298 327 1.4E-62 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 1.4E-62 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.4E-62 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.4E-62 T 19-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 845 852 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 298 305 - T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 SMART SM01096 422 544 1.0E-59 T 19-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.30.1490.20 142 200 4.6E-16 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 PANTHER PTHR11405 1 1077 0.0 T 19-04-2016 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.30.1490.20 693 751 8.1E-20 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF52440 559 682 4.89E-41 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.30.470.20 201 399 2.1E-74 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.30.470.20 752 940 3.3E-69 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF56059 680 939 1.54E-93 T 19-04-2016 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 SUPERFAMILY SSF56059 128 401 6.19E-97 T 19-04-2016 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.40.50.1380 944 1079 9.3E-38 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 680 879 5.9E-29 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 335 1.5E-64 T 19-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Gene3D G3DSA:3.40.50.20 534 669 6.3E-50 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1068 12.343 T 19-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS08600 22532d13c96acc85a5f7842167464724 1101 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 425 544 6.9E-38 T 19-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 AMF_RS06150 123b6f61616ac871de3403410f5fcc39 260 PANTHER PTHR20858 1 253 5.4E-95 T 19-04-2016 AMF_RS06150 123b6f61616ac871de3403410f5fcc39 260 SUPERFAMILY SSF53613 1 252 1.49E-67 T 19-04-2016 IPR029056 Ribokinase-like AMF_RS06150 123b6f61616ac871de3403410f5fcc39 260 PANTHER PTHR20858:SF17 1 253 5.4E-95 T 19-04-2016 AMF_RS06150 123b6f61616ac871de3403410f5fcc39 260 Pfam PF08543 Phosphomethylpyrimidine kinase 8 247 1.5E-81 T 19-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 AMF_RS06150 123b6f61616ac871de3403410f5fcc39 260 Gene3D G3DSA:3.40.1190.20 1 249 3.8E-82 T 19-04-2016 IPR029056 Ribokinase-like AMF_RS06150 123b6f61616ac871de3403410f5fcc39 260 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 1 249 3.6E-79 T 19-04-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 Pfam PF01624 MutS domain I 11 123 1.2E-37 T 19-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 11 806 3.1E-239 T 19-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 SUPERFAMILY SSF52540 573 800 1.77E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 PIRSF PIRSF037677 1 810 6.5E-167 T 19-04-2016 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 Gene3D G3DSA:3.40.50.300 573 800 2.0E-79 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 Gene3D G3DSA:1.10.1420.10 271 475 3.1E-45 T 19-04-2016 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 SMART SM00533 290 597 1.2E-75 T 19-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 Pfam PF05190 MutS family domain IV 436 524 5.8E-14 T 19-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 Pfam PF05192 MutS domain III 276 565 1.7E-37 T 19-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 SUPERFAMILY SSF53150 118 273 1.24E-35 T 19-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 PANTHER PTHR11361 1 800 0.0 T 19-04-2016 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 SMART SM00534 611 798 1.2E-108 T 19-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 SUPERFAMILY SSF55271 4 119 1.96E-38 T 19-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 Pfam PF05188 MutS domain II 132 259 7.9E-23 T 19-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 692 708 - T 19-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 PANTHER PTHR11361:SF86 1 800 0.0 T 19-04-2016 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 Gene3D G3DSA:3.40.1170.10 3 123 7.5E-45 T 19-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 SUPERFAMILY SSF48334 274 571 9.16E-75 T 19-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 Gene3D G3DSA:3.30.420.110 130 260 5.1E-33 T 19-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AMF_RS06585 19028ce7218f5a931a6302acf4ce7de8 819 Pfam PF00488 MutS domain V 614 797 2.1E-78 T 19-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMF_RS07620 77133869a70fcabfc2bd2e61dc78646a 238 ProDom PD202328 DNA REPAIR RECOMBINATION RECO DAMAGE O O RECO-RELATED RECOMBINATIONAL RP549 125 231 2.0E-53 T 19-04-2016 AMF_RS07620 77133869a70fcabfc2bd2e61dc78646a 238 Hamap MF_00201 DNA repair protein RecO [recO]. 1 236 14.129 T 19-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMF_RS07620 77133869a70fcabfc2bd2e61dc78646a 238 TIGRFAM TIGR00613 reco: DNA repair protein RecO 4 231 1.2E-22 T 19-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMF_RS07620 77133869a70fcabfc2bd2e61dc78646a 238 SUPERFAMILY SSF57863 79 190 1.26E-9 T 19-04-2016 AMF_RS07620 77133869a70fcabfc2bd2e61dc78646a 238 Pfam PF02565 Recombination protein O C terminal 80 221 6.8E-15 T 19-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMF_RS07620 77133869a70fcabfc2bd2e61dc78646a 238 PANTHER PTHR33991 1 188 1.7E-13 T 19-04-2016 AMF_RS07620 77133869a70fcabfc2bd2e61dc78646a 238 Pfam PF11967 Recombination protein O N terminal 1 66 3.5E-8 T 19-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal AMF_RS07675 9a67af6809d8e2b25429f9985c717529 431 TIGRFAM TIGR01499 folC: bifunctional protein FolC 20 427 1.9E-110 T 19-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 AMF_RS07675 9a67af6809d8e2b25429f9985c717529 431 SUPERFAMILY SSF53623 15 285 4.35E-83 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS07675 9a67af6809d8e2b25429f9985c717529 431 Gene3D G3DSA:3.40.1190.10 12 286 1.6E-86 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS07675 9a67af6809d8e2b25429f9985c717529 431 PIRSF PIRSF001563 10 429 1.4E-106 T 19-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 AMF_RS07675 9a67af6809d8e2b25429f9985c717529 431 Pfam PF08245 Mur ligase middle domain 43 260 2.1E-12 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS07675 9a67af6809d8e2b25429f9985c717529 431 SUPERFAMILY SSF53244 288 427 1.72E-21 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS07675 9a67af6809d8e2b25429f9985c717529 431 Gene3D G3DSA:3.90.190.20 288 427 4.4E-25 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS07675 9a67af6809d8e2b25429f9985c717529 431 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 133 148 - T 19-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 AMF_RS07675 9a67af6809d8e2b25429f9985c717529 431 PANTHER PTHR11136 17 427 1.7E-110 T 19-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 AMF_RS07675 9a67af6809d8e2b25429f9985c717529 431 PANTHER PTHR11136:SF0 17 427 1.7E-110 T 19-04-2016 AMF_RS08905 619438e30536b12bf52bd7a9de55437b 148 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 19 148 28.885 T 19-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid AMF_RS08905 619438e30536b12bf52bd7a9de55437b 148 ProSitePatterns PS00360 Ribosomal protein S9 signature. 87 105 - T 19-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 AMF_RS08905 619438e30536b12bf52bd7a9de55437b 148 SUPERFAMILY SSF54211 23 148 7.21E-43 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS08905 619438e30536b12bf52bd7a9de55437b 148 PANTHER PTHR21569:SF1 22 148 6.1E-55 T 19-04-2016 AMF_RS08905 619438e30536b12bf52bd7a9de55437b 148 Pfam PF00380 Ribosomal protein S9/S16 28 148 3.4E-42 T 19-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AMF_RS08905 619438e30536b12bf52bd7a9de55437b 148 Gene3D G3DSA:3.30.230.10 23 148 2.9E-45 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_RS08905 619438e30536b12bf52bd7a9de55437b 148 PANTHER PTHR21569 22 148 6.1E-55 T 19-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AMF_RS05470 870b0f236049d5e02c4a27301946bcfd 211 PANTHER PTHR10344 1 205 9.2E-45 T 19-04-2016 AMF_RS05470 870b0f236049d5e02c4a27301946bcfd 211 Hamap MF_00165 Thymidylate kinase [tmk]. 1 207 25.562 T 19-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AMF_RS05470 870b0f236049d5e02c4a27301946bcfd 211 Gene3D G3DSA:3.40.50.300 1 198 1.3E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05470 870b0f236049d5e02c4a27301946bcfd 211 ProSitePatterns PS01331 Thymidylate kinase signature. 92 104 - T 19-04-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AMF_RS05470 870b0f236049d5e02c4a27301946bcfd 211 Pfam PF02223 Thymidylate kinase 5 183 6.0E-37 T 19-04-2016 AMF_RS05470 870b0f236049d5e02c4a27301946bcfd 211 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 183 1.8E-42 T 19-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AMF_RS05470 870b0f236049d5e02c4a27301946bcfd 211 SUPERFAMILY SSF52540 1 192 8.13E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07025 aee9381aa418c1cfd99380f636de9d6b 258 SUPERFAMILY SSF53335 29 211 1.13E-24 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07025 aee9381aa418c1cfd99380f636de9d6b 258 Gene3D G3DSA:3.40.50.150 44 258 3.1E-24 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07025 aee9381aa418c1cfd99380f636de9d6b 258 Pfam PF08241 Methyltransferase domain 48 135 1.8E-14 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMF_RS07025 aee9381aa418c1cfd99380f636de9d6b 258 PANTHER PTHR13090 3 235 1.1E-37 T 19-04-2016 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 58 3.4E-20 T 19-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 SUPERFAMILY SSF50249 129 186 4.28E-16 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 SUPERFAMILY SSF50249 66 127 1.46E-12 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 Gene3D G3DSA:2.30.30.30 6 64 1.6E-20 T 19-04-2016 IPR014722 Ribosomal protein L2 domain 2 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 SMART SM01185 68 122 2.6E-17 T 19-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 Gene3D G3DSA:2.40.50.140 130 186 1.5E-21 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 Gene3D G3DSA:2.40.50.140 66 127 5.3E-17 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 PANTHER PTHR30053:SF1 4 187 3.5E-72 T 19-04-2016 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 ProSitePatterns PS01275 Elongation factor P signature. 151 170 - T 19-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 SUPERFAMILY SSF50104 6 63 1.38E-15 T 19-04-2016 IPR008991 Translation protein SH3-like domain AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 Hamap MF_00141 Elongation factor P [efp]. 2 186 39.392 T 19-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 122 3.2E-15 T 19-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 Pfam PF09285 Elongation factor P, C-terminal 130 185 1.6E-20 T 19-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 SMART SM00841 130 185 3.0E-26 T 19-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 TIGRFAM TIGR00038 efp: translation elongation factor P 5 186 9.5E-64 T 19-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 PIRSF PIRSF005901 1 187 1.7E-59 T 19-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 AMF_RS06800 f01a5c48cf2935e7d13a212c4be402ba 188 PANTHER PTHR30053 4 187 3.5E-72 T 19-04-2016 AMF_RS06505 a3542d0a5e91f1b1601fb355e390f411 180 Pfam PF11412 Disulphide bond corrector protein DsbC 49 156 1.9E-10 T 19-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AMF_RS05915 b8878616bebafa67e8e11ae223478b44 210 Pfam PF02630 SCO1/SenC 54 185 5.9E-34 T 19-04-2016 IPR003782 Copper chaperone SCO1/SenC AMF_RS05915 b8878616bebafa67e8e11ae223478b44 210 Gene3D G3DSA:3.40.30.10 11 193 7.3E-44 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05915 b8878616bebafa67e8e11ae223478b44 210 PANTHER PTHR12151 54 193 3.9E-36 T 19-04-2016 IPR003782 Copper chaperone SCO1/SenC AMF_RS05915 b8878616bebafa67e8e11ae223478b44 210 SUPERFAMILY SSF52833 54 193 1.31E-38 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 Gene3D G3DSA:3.40.1390.10 19 89 1.8E-20 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 PANTHER PTHR23135 10 457 2.5E-129 T 19-04-2016 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 SUPERFAMILY SSF53244 327 455 6.64E-32 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 Gene3D G3DSA:3.40.1190.10 90 311 6.0E-58 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 Pfam PF02875 Mur ligase family, glutamate ligase domain 328 378 1.3E-6 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 28 455 1.0E-112 T 19-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 Gene3D G3DSA:3.90.190.20 317 458 4.8E-35 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 14 456 31.139 T 19-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 Pfam PF01225 Mur ligase family, catalytic domain 26 93 6.8E-9 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 SUPERFAMILY SSF63418 10 96 6.41E-21 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 Pfam PF08245 Mur ligase middle domain 107 292 2.7E-40 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 PANTHER PTHR23135:SF3 10 457 2.5E-129 T 19-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS08025 b275d3e597aad65072d89994810a6db4 463 SUPERFAMILY SSF53623 102 311 9.81E-45 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS05080 8d9920ffac0d5190d709a9d1a8f6e461 200 Gene3D G3DSA:3.40.30.10 29 143 9.9E-8 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05080 8d9920ffac0d5190d709a9d1a8f6e461 200 SUPERFAMILY SSF52833 25 151 2.62E-9 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS08540 5632c6a2d0101e2b74033b6fe12343ee 350 PANTHER PTHR11108 6 320 1.8E-90 T 19-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 AMF_RS08540 5632c6a2d0101e2b74033b6fe12343ee 350 Gene3D G3DSA:3.40.50.1400 6 207 1.0E-55 T 19-04-2016 AMF_RS08540 5632c6a2d0101e2b74033b6fe12343ee 350 Hamap MF_00323 Ferrochelatase [hemH]. 7 324 30.816 T 19-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 AMF_RS08540 5632c6a2d0101e2b74033b6fe12343ee 350 Gene3D G3DSA:3.40.50.1400 208 320 2.3E-31 T 19-04-2016 AMF_RS08540 5632c6a2d0101e2b74033b6fe12343ee 350 SUPERFAMILY SSF53800 7 335 4.09E-89 T 19-04-2016 AMF_RS08540 5632c6a2d0101e2b74033b6fe12343ee 350 Pfam PF00762 Ferrochelatase 8 321 6.8E-97 T 19-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 AMF_RS08540 5632c6a2d0101e2b74033b6fe12343ee 350 ProSitePatterns PS00534 Ferrochelatase signature. 196 214 - T 19-04-2016 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 AMF_RS08540 5632c6a2d0101e2b74033b6fe12343ee 350 TIGRFAM TIGR00109 hemH: ferrochelatase 5 321 1.4E-78 T 19-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 AMF_RS06935 40023d93e413f5ec3fc1febdc1120c47 120 Gene3D G3DSA:3.90.470.20 2 118 2.9E-35 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMF_RS06935 40023d93e413f5ec3fc1febdc1120c47 120 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 118 9.0E-58 T 19-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMF_RS06935 40023d93e413f5ec3fc1febdc1120c47 120 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 116 1.9E-20 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMF_RS06935 40023d93e413f5ec3fc1febdc1120c47 120 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 118 1.9E-23 T 19-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMF_RS06935 40023d93e413f5ec3fc1febdc1120c47 120 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 120 22.647 T 19-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMF_RS06935 40023d93e413f5ec3fc1febdc1120c47 120 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 118 8.6E-26 T 19-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMF_RS06935 40023d93e413f5ec3fc1febdc1120c47 120 SUPERFAMILY SSF56214 2 118 2.09E-28 T 19-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AMF_RS07295 409158cf2ac39086da66c988250ab045 42 PANTHER PTHR18804:SF11 2 41 2.0E-13 T 19-04-2016 AMF_RS07295 409158cf2ac39086da66c988250ab045 42 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07295 409158cf2ac39086da66c988250ab045 42 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.329 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07295 409158cf2ac39086da66c988250ab045 42 SUPERFAMILY SSF57840 6 41 5.76E-13 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07295 409158cf2ac39086da66c988250ab045 42 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 9 41 1.9E-8 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07295 409158cf2ac39086da66c988250ab045 42 Pfam PF00444 Ribosomal protein L36 2 41 2.8E-16 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07295 409158cf2ac39086da66c988250ab045 42 PANTHER PTHR18804 2 41 2.0E-13 T 19-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07695 f01dd637dbe10644a351f2f1848aa544 160 PANTHER PTHR10849 15 159 2.1E-96 T 19-04-2016 AMF_RS07695 f01dd637dbe10644a351f2f1848aa544 160 Pfam PF12838 4Fe-4S dicluster domain 60 114 1.2E-12 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMF_RS07695 f01dd637dbe10644a351f2f1848aa544 160 PANTHER PTHR10849:SF20 15 159 2.1E-96 T 19-04-2016 AMF_RS07695 f01dd637dbe10644a351f2f1848aa544 160 SUPERFAMILY SSF54862 34 141 2.26E-26 T 19-04-2016 AMF_RS07695 f01dd637dbe10644a351f2f1848aa544 160 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 17 138 9.1E-51 T 19-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 AMF_RS07695 f01dd637dbe10644a351f2f1848aa544 160 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 8 142 27.719 T 19-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 AMF_RS07695 f01dd637dbe10644a351f2f1848aa544 160 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 100 111 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMF_RS07695 f01dd637dbe10644a351f2f1848aa544 160 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 61 72 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMF_RS07695 f01dd637dbe10644a351f2f1848aa544 160 Gene3D G3DSA:1.10.1060.10 15 137 1.5E-23 T 19-04-2016 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 758 776 - T 19-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 SUPERFAMILY SSF52009 391 514 9.81E-34 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:3.20.20.60 535 868 1.1E-127 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:3.30.1490.20 7 114 1.7E-47 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:3.30.1490.20 203 246 1.7E-47 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:3.50.30.10 404 508 2.0E-36 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 PANTHER PTHR22931 6 876 0.0 T 19-04-2016 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 5 868 0.0 T 19-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 PANTHER PTHR22931:SF9 6 876 0.0 T 19-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Pfam PF00391 PEP-utilising enzyme, mobile domain 423 505 1.9E-25 T 19-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:1.10.189.10 345 403 1.4E-23 T 19-04-2016 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:1.20.80.30 115 201 1.8E-20 T 19-04-2016 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Gene3D G3DSA:3.30.470.20 247 344 3.0E-37 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 451 462 - T 19-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 22 294 9.0E-41 T 19-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 307 359 3.7E-10 T 19-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 PIRSF PIRSF000853 2 876 0.0 T 19-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 522 866 5.4E-89 T 19-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 SUPERFAMILY SSF56059 15 382 3.06E-126 T 19-04-2016 AMF_RS05790 883010e0a5013d5b9d210c8205f35c37 884 SUPERFAMILY SSF51621 513 867 1.44E-117 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMF_RS09765 96c7d424fc777f1d1334df19efdf23e6 134 PRINTS PR00061 Ribosomal protein L19 signature 92 117 3.9E-27 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09765 96c7d424fc777f1d1334df19efdf23e6 134 PRINTS PR00061 Ribosomal protein L19 signature 8 37 3.9E-27 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09765 96c7d424fc777f1d1334df19efdf23e6 134 PRINTS PR00061 Ribosomal protein L19 signature 38 67 3.9E-27 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09765 96c7d424fc777f1d1334df19efdf23e6 134 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 18 116 4.0E-36 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09765 96c7d424fc777f1d1334df19efdf23e6 134 PIRSF PIRSF002191 1 134 1.4E-40 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09765 96c7d424fc777f1d1334df19efdf23e6 134 SUPERFAMILY SSF50104 5 119 2.91E-36 T 19-04-2016 IPR008991 Translation protein SH3-like domain AMF_RS09765 96c7d424fc777f1d1334df19efdf23e6 134 PANTHER PTHR15680 1 123 1.2E-36 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09765 96c7d424fc777f1d1334df19efdf23e6 134 Pfam PF01245 Ribosomal protein L19 6 116 1.9E-36 T 19-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 7 18 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 PANTHER PTHR11451 1 306 1.0E-63 T 19-04-2016 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 Gene3D G3DSA:1.10.1160.10 233 313 2.1E-12 T 19-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 SUPERFAMILY SSF52374 2 292 2.39E-85 T 19-04-2016 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 1 441 24.96 T 19-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 323 2.6E-92 T 19-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 300 1.9E-68 T 19-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 SUPERFAMILY SSF48163 278 441 4.05E-26 T 19-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 Gene3D G3DSA:1.10.10.350 362 440 1.4E-9 T 19-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 PANTHER PTHR11451:SF41 1 306 1.0E-63 T 19-04-2016 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 Gene3D G3DSA:3.40.50.620 2 66 1.1E-43 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 Gene3D G3DSA:3.40.50.620 181 230 1.1E-43 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 Gene3D G3DSA:3.90.800.10 67 180 9.6E-27 T 19-04-2016 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 18 29 9.3E-22 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 9.3E-22 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 33 46 9.3E-22 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 4 16 9.3E-22 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS05205 0eec4b38b3b13d8c43fc70bd3b264c93 441 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 9.3E-22 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS09150 073c70a8fd55d26b6f7fb0cd6b60b035 145 Pfam PF07977 FabA-like domain 12 138 6.4E-32 T 19-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 AMF_RS09150 073c70a8fd55d26b6f7fb0cd6b60b035 145 SUPERFAMILY SSF54637 3 144 3.74E-44 T 19-04-2016 IPR029069 HotDog domain AMF_RS09150 073c70a8fd55d26b6f7fb0cd6b60b035 145 Gene3D G3DSA:3.10.129.10 3 144 5.1E-53 T 19-04-2016 IPR029069 HotDog domain AMF_RS09150 073c70a8fd55d26b6f7fb0cd6b60b035 145 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 3 145 30.752 T 19-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 AMF_RS09150 073c70a8fd55d26b6f7fb0cd6b60b035 145 PANTHER PTHR30272 3 145 8.5E-60 T 19-04-2016 AMF_RS09150 073c70a8fd55d26b6f7fb0cd6b60b035 145 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 4 144 2.5E-51 T 19-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 PANTHER PTHR30081 219 492 1.1E-113 T 19-04-2016 AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 PANTHER PTHR30081 134 192 1.1E-113 T 19-04-2016 AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 PANTHER PTHR30081 38 89 1.1E-113 T 19-04-2016 AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 Pfam PF02355 Protein export membrane protein 322 489 3.3E-16 T 19-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 SUPERFAMILY SSF82866 298 492 4.84E-39 T 19-04-2016 AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 PANTHER PTHR30081:SF1 219 492 1.1E-113 T 19-04-2016 AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 PANTHER PTHR30081:SF1 134 192 1.1E-113 T 19-04-2016 AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 PANTHER PTHR30081:SF1 38 89 1.1E-113 T 19-04-2016 AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 501 39.934 T 19-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 251 481 3.8E-69 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 39 488 1.2E-117 T 19-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 Pfam PF07549 SecD/SecF GG Motif 32 54 8.5E-5 T 19-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMF_RS09690 ad5ae348f91707897cf2b09d5ceb1bb6 501 Gene3D G3DSA:1.20.1640.10 302 492 2.3E-23 T 19-04-2016 AMF_RS07825 1c5f019d57315a31ae34b93f3fae9497 430 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 344 355 - T 19-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 AMF_RS07825 1c5f019d57315a31ae34b93f3fae9497 430 Pfam PF10531 SLBB domain 242 293 2.7E-9 T 19-04-2016 IPR019554 Soluble ligand binding domain AMF_RS07825 1c5f019d57315a31ae34b93f3fae9497 430 PANTHER PTHR11780 1 417 5.1E-258 T 19-04-2016 AMF_RS07825 1c5f019d57315a31ae34b93f3fae9497 430 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 46 219 2.3E-48 T 19-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain AMF_RS07825 1c5f019d57315a31ae34b93f3fae9497 430 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 333 414 6.6E-28 T 19-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 AMF_RS07825 1c5f019d57315a31ae34b93f3fae9497 430 SUPERFAMILY SSF142019 7 240 1.23E-83 T 19-04-2016 AMF_RS07825 1c5f019d57315a31ae34b93f3fae9497 430 SUPERFAMILY SSF140490 327 421 1.44E-34 T 19-04-2016 AMF_RS07825 1c5f019d57315a31ae34b93f3fae9497 430 SUPERFAMILY SSF142984 241 326 5.23E-25 T 19-04-2016 AMF_RS07825 1c5f019d57315a31ae34b93f3fae9497 430 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 8 417 6.3E-191 T 19-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 AMF_RS07825 1c5f019d57315a31ae34b93f3fae9497 430 SMART SM00928 331 376 2.4E-25 T 19-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 6 132 2.3E-30 T 19-04-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 PANTHER PTHR30525 2 393 1.1E-153 T 19-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 SUPERFAMILY SSF69055 290 384 2.22E-24 T 19-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 SUPERFAMILY SSF51735 4 150 1.22E-38 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 Gene3D G3DSA:1.10.1740.10 301 385 7.2E-21 T 19-04-2016 AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 SUPERFAMILY SSF55347 126 262 5.56E-53 T 19-04-2016 AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 227 1.8E-37 T 19-04-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 Pfam PF13288 DXP reductoisomerase C-terminal domain 259 376 5.3E-29 T 19-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 PIRSF PIRSF006205 3 389 8.0E-123 T 19-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 Gene3D G3DSA:3.40.50.720 2 150 5.6E-41 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 6 382 38.683 T 19-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS07795 0d75211d6d07bb5a8340e338d0988a19 393 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 380 1.5E-108 T 19-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS09070 bcbca82906dfb3083704cfc3bce6297f 444 SUPERFAMILY SSF63411 36 241 1.05E-35 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_RS09070 bcbca82906dfb3083704cfc3bce6297f 444 Gene3D G3DSA:3.30.830.10 32 244 2.2E-37 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMF_RS09070 bcbca82906dfb3083704cfc3bce6297f 444 PANTHER PTHR11851:SF140 37 432 1.2E-35 T 19-04-2016 AMF_RS09070 bcbca82906dfb3083704cfc3bce6297f 444 Pfam PF05193 Peptidase M16 inactive domain 194 367 2.8E-17 T 19-04-2016 IPR007863 Peptidase M16, C-terminal AMF_RS09070 bcbca82906dfb3083704cfc3bce6297f 444 SUPERFAMILY SSF63411 259 433 3.5E-28 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_RS09070 bcbca82906dfb3083704cfc3bce6297f 444 Gene3D G3DSA:3.30.830.10 260 433 3.6E-18 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMF_RS09070 bcbca82906dfb3083704cfc3bce6297f 444 Pfam PF00675 Insulinase (Peptidase family M16) 49 166 2.5E-6 T 19-04-2016 IPR011765 Peptidase M16, N-terminal AMF_RS09070 bcbca82906dfb3083704cfc3bce6297f 444 PANTHER PTHR11851 37 432 1.2E-35 T 19-04-2016 AMF_RS06975 b9d0085689ec6b0c17b077c4b59d81e3 631 PANTHER PTHR10657:SF13 203 398 1.7E-27 T 19-04-2016 AMF_RS06975 b9d0085689ec6b0c17b077c4b59d81e3 631 PANTHER PTHR10657:SF13 35 166 1.7E-27 T 19-04-2016 AMF_RS06975 b9d0085689ec6b0c17b077c4b59d81e3 631 Gene3D G3DSA:3.10.50.40 278 377 9.7E-13 T 19-04-2016 AMF_RS06975 b9d0085689ec6b0c17b077c4b59d81e3 631 PANTHER PTHR10657 203 398 1.7E-27 T 19-04-2016 AMF_RS06975 b9d0085689ec6b0c17b077c4b59d81e3 631 PANTHER PTHR10657 35 166 1.7E-27 T 19-04-2016 AMF_RS06975 b9d0085689ec6b0c17b077c4b59d81e3 631 SUPERFAMILY SSF54534 268 356 1.88E-10 T 19-04-2016 AMF_RS06975 b9d0085689ec6b0c17b077c4b59d81e3 631 Pfam PF13145 PPIC-type PPIASE domain 272 364 7.5E-11 T 19-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 AMF_RS06975 b9d0085689ec6b0c17b077c4b59d81e3 631 SUPERFAMILY SSF109998 36 164 1.49E-18 T 19-04-2016 IPR027304 Trigger factor/SurA domain AMF_RS06975 b9d0085689ec6b0c17b077c4b59d81e3 631 SUPERFAMILY SSF109998 245 296 1.49E-18 T 19-04-2016 IPR027304 Trigger factor/SurA domain AMF_RS06975 b9d0085689ec6b0c17b077c4b59d81e3 631 Pfam PF13624 SurA N-terminal domain 4 155 1.0E-29 T 19-04-2016 AMF_RS08105 c115b5e72e15cbf5ef5f2dbc65d38e18 327 PANTHER PTHR11079:SF73 6 326 3.7E-97 T 19-04-2016 AMF_RS08105 c115b5e72e15cbf5ef5f2dbc65d38e18 327 Pfam PF00849 RNA pseudouridylate synthase 90 247 2.5E-29 T 19-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS08105 c115b5e72e15cbf5ef5f2dbc65d38e18 327 SUPERFAMILY SSF55174 16 64 3.87E-9 T 19-04-2016 AMF_RS08105 c115b5e72e15cbf5ef5f2dbc65d38e18 327 Gene3D G3DSA:3.10.290.10 15 63 2.3E-10 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMF_RS08105 c115b5e72e15cbf5ef5f2dbc65d38e18 327 SMART SM00363 16 79 8.2E-4 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMF_RS08105 c115b5e72e15cbf5ef5f2dbc65d38e18 327 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 137 151 - T 19-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS08105 c115b5e72e15cbf5ef5f2dbc65d38e18 327 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 12 315 7.2E-79 T 19-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS08105 c115b5e72e15cbf5ef5f2dbc65d38e18 327 PANTHER PTHR11079 6 326 3.7E-97 T 19-04-2016 AMF_RS08105 c115b5e72e15cbf5ef5f2dbc65d38e18 327 Pfam PF01479 S4 domain 16 61 5.2E-6 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMF_RS08105 c115b5e72e15cbf5ef5f2dbc65d38e18 327 SUPERFAMILY SSF55120 78 316 1.64E-66 T 19-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 SUPERFAMILY SSF52540 60 138 1.68E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 SUPERFAMILY SSF52540 173 351 1.68E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 3 430 28.758 T 19-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 2 430 1.6E-92 T 19-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 PANTHER PTHR11649 1 430 1.4E-144 T 19-04-2016 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 SUPERFAMILY SSF116878 359 430 9.42E-46 T 19-04-2016 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 SUPERFAMILY SSF116878 107 205 9.42E-46 T 19-04-2016 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 Gene3D G3DSA:3.30.1360.120 2 107 1.0E-33 T 19-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 Gene3D G3DSA:3.40.50.300 178 233 1.1E-6 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 202 321 4.8E-19 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 Pfam PF10396 GTP-binding protein TrmE N-terminus 2 106 3.4E-31 T 19-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 Gene3D G3DSA:1.20.120.430 234 256 2.4E-52 T 19-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 Gene3D G3DSA:1.20.120.430 108 168 2.4E-52 T 19-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 Gene3D G3DSA:1.20.120.430 364 430 2.4E-52 T 19-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 PANTHER PTHR11649:SF56 1 430 1.4E-144 T 19-04-2016 AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 Pfam PF12631 MnmE helical domain 109 427 3.1E-51 T 19-04-2016 IPR025867 MnmE, helical domain AMF_RS10015 4f59e2cc5c1fef89fd73c01cfa7be175 430 Pfam PF01926 50S ribosome-binding GTPase 203 289 1.2E-20 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS06860 f0a36baa0e9296b721443238fc4d869c 343 PANTHER PTHR12049 16 342 6.9E-85 T 19-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA AMF_RS06860 f0a36baa0e9296b721443238fc4d869c 343 PANTHER PTHR12049:SF7 16 342 6.9E-85 T 19-04-2016 AMF_RS06860 f0a36baa0e9296b721443238fc4d869c 343 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 59 283 8.2E-54 T 19-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA AMF_RS06860 f0a36baa0e9296b721443238fc4d869c 343 SUPERFAMILY SSF53335 11 339 3.03E-100 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 Gene3D G3DSA:2.60.260.20 258 336 3.8E-24 T 19-04-2016 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 19-04-2016 IPR018253 DnaJ domain, conserved site AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 SMART SM00271 4 62 1.5E-32 T 19-04-2016 IPR001623 DnaJ domain AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 Gene3D G3DSA:1.10.287.110 3 104 1.8E-36 T 19-04-2016 IPR001623 DnaJ domain AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 SUPERFAMILY SSF49493 214 258 1.96E-16 T 19-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 SUPERFAMILY SSF49493 119 153 1.96E-16 T 19-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 SUPERFAMILY SSF49493 259 347 5.23E-23 T 19-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 PANTHER PTHR24078 1 353 1.1E-134 T 19-04-2016 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 Pfam PF00684 DnaJ central domain 148 208 3.1E-9 T 19-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 Pfam PF00226 DnaJ domain 5 67 3.9E-29 T 19-04-2016 IPR001623 DnaJ domain AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 PANTHER PTHR24078:SF190 1 353 1.1E-134 T 19-04-2016 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 Gene3D G3DSA:2.60.260.20 117 138 6.6E-17 T 19-04-2016 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 Gene3D G3DSA:2.60.260.20 201 257 6.6E-17 T 19-04-2016 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 SUPERFAMILY SSF46565 3 105 1.44E-35 T 19-04-2016 IPR001623 DnaJ domain AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 SUPERFAMILY SSF57938 135 212 2.22E-17 T 19-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 372 39.03 T 19-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 PRINTS PR00625 DnaJ domain signature 62 81 8.0E-31 T 19-04-2016 IPR001623 DnaJ domain AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 PRINTS PR00625 DnaJ domain signature 42 62 8.0E-31 T 19-04-2016 IPR001623 DnaJ domain AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 PRINTS PR00625 DnaJ domain signature 7 25 8.0E-31 T 19-04-2016 IPR001623 DnaJ domain AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 PRINTS PR00625 DnaJ domain signature 25 40 8.0E-31 T 19-04-2016 IPR001623 DnaJ domain AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 353 6.1E-127 T 19-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 Gene3D G3DSA:2.10.230.10 139 200 3.1E-17 T 19-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMF_RS09865 ffdeae5b85b82314c6a087634e052d44 379 Pfam PF01556 DnaJ C terminal domain 122 336 2.7E-40 T 19-04-2016 IPR002939 Chaperone DnaJ, C-terminal AMF_RS09020 3f79713d2c7a94f1f6fd025e7a1cbf47 366 PANTHER PTHR10264 144 354 6.8E-86 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMF_RS09020 3f79713d2c7a94f1f6fd025e7a1cbf47 366 PANTHER PTHR10264 69 128 6.8E-86 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMF_RS09020 3f79713d2c7a94f1f6fd025e7a1cbf47 366 TIGRFAM TIGR01933 hflK: HflK protein 76 354 6.3E-81 T 19-04-2016 IPR010201 HflK GO:0016021 AMF_RS09020 3f79713d2c7a94f1f6fd025e7a1cbf47 366 SUPERFAMILY SSF117892 144 259 1.31E-17 T 19-04-2016 IPR001107 Band 7 domain AMF_RS09020 3f79713d2c7a94f1f6fd025e7a1cbf47 366 PANTHER PTHR10264:SF51 144 354 6.8E-86 T 19-04-2016 IPR010201 HflK GO:0016021 AMF_RS09020 3f79713d2c7a94f1f6fd025e7a1cbf47 366 PANTHER PTHR10264:SF51 69 128 6.8E-86 T 19-04-2016 IPR010201 HflK GO:0016021 AMF_RS09020 3f79713d2c7a94f1f6fd025e7a1cbf47 366 SMART SM00244 74 253 5.1E-24 T 19-04-2016 IPR001107 Band 7 domain AMF_RS09020 3f79713d2c7a94f1f6fd025e7a1cbf47 366 Pfam PF01145 SPFH domain / Band 7 family 78 268 2.7E-26 T 19-04-2016 IPR001107 Band 7 domain AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 Gene3D G3DSA:1.10.10.10 230 291 4.4E-17 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 Pfam PF04545 Sigma-70, region 4 234 284 3.6E-13 T 19-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 55 285 4.7E-30 T 19-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 PRINTS PR00046 Major sigma-70 factor signature 82 95 2.0E-19 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 PRINTS PR00046 Major sigma-70 factor signature 257 272 2.0E-19 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 PRINTS PR00046 Major sigma-70 factor signature 106 114 2.0E-19 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 PRINTS PR00046 Major sigma-70 factor signature 272 283 2.0E-19 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 PRINTS PR00046 Major sigma-70 factor signature 238 250 2.0E-19 T 19-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 Gene3D G3DSA:1.10.601.10 19 124 1.2E-31 T 19-04-2016 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 SUPERFAMILY SSF88659 195 292 1.38E-15 T 19-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 PANTHER PTHR30376 7 288 1.5E-78 T 19-04-2016 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 Pfam PF04542 Sigma-70 region 2 58 126 5.1E-15 T 19-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS07440 1df2642404da5b71055d0e95e0bf9f00 296 SUPERFAMILY SSF88946 16 126 8.95E-35 T 19-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMF_RS06690 ffb18377f27d4c62dab468d85b2a7cca 258 SUPERFAMILY SSF52540 32 224 9.77E-25 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06690 ffb18377f27d4c62dab468d85b2a7cca 258 PANTHER PTHR10695 32 205 8.6E-26 T 19-04-2016 AMF_RS06690 ffb18377f27d4c62dab468d85b2a7cca 258 Gene3D G3DSA:3.40.50.300 31 232 3.8E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06690 ffb18377f27d4c62dab468d85b2a7cca 258 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 35 205 5.2E-28 T 19-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 AMF_RS06690 ffb18377f27d4c62dab468d85b2a7cca 258 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 32 227 20.532 T 19-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 AMF_RS06690 ffb18377f27d4c62dab468d85b2a7cca 258 Pfam PF01121 Dephospho-CoA kinase 34 205 2.5E-27 T 19-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 SUPERFAMILY SSF52540 72 267 2.7E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 271 401 7.9E-20 T 19-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 Gene3D G3DSA:3.40.50.300 42 202 8.4E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 SUPERFAMILY SSF48019 281 398 5.44E-8 T 19-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 PANTHER PTHR11669 43 401 5.9E-116 T 19-04-2016 AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 Pfam PF13177 DNA polymerase III, delta subunit 58 214 1.8E-32 T 19-04-2016 AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 PANTHER PTHR11669:SF0 43 401 5.9E-116 T 19-04-2016 AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 42 389 1.2E-110 T 19-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 Gene3D G3DSA:1.10.8.60 203 279 8.3E-23 T 19-04-2016 AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 SMART SM00382 74 216 1.2E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS09805 c66f59d5ee2b349cffac9818b872b279 514 Gene3D G3DSA:1.20.272.10 280 391 1.0E-5 T 19-04-2016 AMF_RS09790 be6022d4db83c112f07446aadd046693 233 PANTHER PTHR23291:SF42 15 233 1.6E-58 T 19-04-2016 AMF_RS09790 be6022d4db83c112f07446aadd046693 233 PANTHER PTHR23291 15 233 1.6E-58 T 19-04-2016 IPR006214 Bax inhibitor 1-related AMF_RS09790 be6022d4db83c112f07446aadd046693 233 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 18 229 1.1E-53 T 19-04-2016 AMF_RS07395 3f3d61e2a4e7517ae6334df7981b6354 198 PANTHER PTHR11109 16 190 7.1E-43 T 19-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMF_RS07395 3f3d61e2a4e7517ae6334df7981b6354 198 Pfam PF01227 GTP cyclohydrolase I 15 193 1.8E-59 T 19-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMF_RS07395 3f3d61e2a4e7517ae6334df7981b6354 198 Gene3D G3DSA:1.10.286.10 10 53 4.0E-9 T 19-04-2016 AMF_RS07395 3f3d61e2a4e7517ae6334df7981b6354 198 Gene3D G3DSA:3.30.1130.10 66 193 3.3E-43 T 19-04-2016 AMF_RS07395 3f3d61e2a4e7517ae6334df7981b6354 198 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 120 130 - T 19-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMF_RS07395 3f3d61e2a4e7517ae6334df7981b6354 198 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 72 88 - T 19-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 AMF_RS07395 3f3d61e2a4e7517ae6334df7981b6354 198 SUPERFAMILY SSF55620 3 194 3.85E-55 T 19-04-2016 AMF_RS08590 fd298f7240bfb1ca5fa8393a8e15ac59 268 Gene3D G3DSA:3.20.20.20 5 266 8.8E-86 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMF_RS08590 fd298f7240bfb1ca5fa8393a8e15ac59 268 PANTHER PTHR20941 5 268 1.6E-87 T 19-04-2016 AMF_RS08590 fd298f7240bfb1ca5fa8393a8e15ac59 268 Pfam PF00809 Pterin binding enzyme 9 252 2.8E-70 T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMF_RS08590 fd298f7240bfb1ca5fa8393a8e15ac59 268 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 8 23 - T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMF_RS08590 fd298f7240bfb1ca5fa8393a8e15ac59 268 SUPERFAMILY SSF51717 4 267 2.09E-78 T 19-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 AMF_RS08590 fd298f7240bfb1ca5fa8393a8e15ac59 268 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 42 55 - T 19-04-2016 IPR000489 Pterin-binding domain GO:0042558 AMF_RS08590 fd298f7240bfb1ca5fa8393a8e15ac59 268 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 7 264 2.5E-81 T 19-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 AMF_RS08590 fd298f7240bfb1ca5fa8393a8e15ac59 268 PANTHER PTHR20941:SF1 5 268 1.6E-87 T 19-04-2016 AMF_RS05175 d569f8f14d694b0b031e20ccb862d687 128 Pfam PF04956 TrbC/VIRB2 family 8 100 1.6E-15 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS05730 12f535c60336f9e586acb91051bf2e92 230 PANTHER PTHR23117:SF13 25 225 1.3E-61 T 19-04-2016 AMF_RS05730 12f535c60336f9e586acb91051bf2e92 230 Gene3D G3DSA:3.30.63.10 60 111 1.9E-23 T 19-04-2016 AMF_RS05730 12f535c60336f9e586acb91051bf2e92 230 Pfam PF00625 Guanylate kinase 32 207 1.9E-35 T 19-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMF_RS05730 12f535c60336f9e586acb91051bf2e92 230 SMART SM00072 28 211 5.0E-33 T 19-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMF_RS05730 12f535c60336f9e586acb91051bf2e92 230 PANTHER PTHR23117 25 225 1.3E-61 T 19-04-2016 AMF_RS05730 12f535c60336f9e586acb91051bf2e92 230 Gene3D G3DSA:3.40.50.300 27 51 1.7E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05730 12f535c60336f9e586acb91051bf2e92 230 Gene3D G3DSA:3.40.50.300 112 219 1.7E-31 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05730 12f535c60336f9e586acb91051bf2e92 230 SUPERFAMILY SSF52540 28 213 3.15E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05730 12f535c60336f9e586acb91051bf2e92 230 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 30 207 4.9E-57 T 19-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AMF_RS05730 12f535c60336f9e586acb91051bf2e92 230 ProSitePatterns PS00856 Guanylate kinase-like signature. 64 81 - T 19-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 PANTHER PTHR11692:SF2 5 513 1.4E-233 T 19-04-2016 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 SUPERFAMILY SSF53927 211 513 1.81E-113 T 19-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 513 37.883 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 PANTHER PTHR11692 5 513 1.4E-233 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 Gene3D G3DSA:3.40.140.20 242 357 4.8E-43 T 19-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 PIRSF PIRSF000414 1 513 3.4E-202 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 448 5.3E-105 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 Gene3D G3DSA:3.40.140.20 371 503 5.0E-50 T 19-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 Pfam PF02142 MGS-like domain 20 130 6.0E-19 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 Gene3D G3DSA:3.40.50.1380 8 189 5.0E-64 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 513 1.3E-167 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 SMART SM00798 136 449 5.2E-164 T 19-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 SUPERFAMILY SSF52335 8 195 9.77E-56 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMF_RS09155 2ab6801e1ae17fd2da8105fe0a348e3b 513 SMART SM00851 19 131 8.3E-40 T 19-04-2016 IPR011607 Methylglyoxal synthase-like domain AMF_RS07940 ce7c8d71861dc7935465672e215c392f 406 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 274 375 2.1E-40 T 19-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 AMF_RS07940 ce7c8d71861dc7935465672e215c392f 406 SUPERFAMILY SSF81648 277 395 2.4E-41 T 19-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 AMF_RS07940 ce7c8d71861dc7935465672e215c392f 406 PANTHER PTHR19271:SF5 10 390 4.0E-213 T 19-04-2016 AMF_RS07940 ce7c8d71861dc7935465672e215c392f 406 Gene3D G3DSA:1.20.810.10 16 392 8.3E-172 T 19-04-2016 IPR027387 Cytochrome b/b6-like domain AMF_RS07940 ce7c8d71861dc7935465672e215c392f 406 Pfam PF00033 Cytochrome b/b6/petB 32 218 7.1E-80 T 19-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 AMF_RS07940 ce7c8d71861dc7935465672e215c392f 406 PANTHER PTHR19271 10 390 4.0E-213 T 19-04-2016 AMF_RS07940 ce7c8d71861dc7935465672e215c392f 406 SUPERFAMILY SSF81342 16 276 3.77E-109 T 19-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 AMF_RS07940 ce7c8d71861dc7935465672e215c392f 406 PIRSF PIRSF038885 6 406 3.2E-191 T 19-04-2016 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 AMF_RS06515 a0dbafca7a199eacb16a256c091534c7 56 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 2 45 3.5E-17 T 19-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMF_RS06515 a0dbafca7a199eacb16a256c091534c7 56 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 54 18.245 T 19-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMF_RS06515 a0dbafca7a199eacb16a256c091534c7 56 Pfam PF02416 mttA/Hcf106 family 3 45 4.5E-13 T 19-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AMF_RS06315 7cb32e1b74736602a76690c7db0eea0c 379 PANTHER PTHR11933 19 370 3.4E-146 T 19-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 AMF_RS06315 7cb32e1b74736602a76690c7db0eea0c 379 Pfam PF03054 tRNA methyl transferase 22 370 6.8E-114 T 19-04-2016 AMF_RS06315 7cb32e1b74736602a76690c7db0eea0c 379 Gene3D G3DSA:3.40.50.620 18 227 4.0E-81 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS06315 7cb32e1b74736602a76690c7db0eea0c 379 Gene3D G3DSA:2.30.30.280 235 289 1.0E-17 T 19-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 AMF_RS06315 7cb32e1b74736602a76690c7db0eea0c 379 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 21 371 38.163 T 19-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 AMF_RS06315 7cb32e1b74736602a76690c7db0eea0c 379 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 22 370 3.3E-103 T 19-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 AMF_RS06315 7cb32e1b74736602a76690c7db0eea0c 379 SUPERFAMILY SSF52402 21 262 1.59E-50 T 19-04-2016 AMF_RS06315 7cb32e1b74736602a76690c7db0eea0c 379 Gene3D G3DSA:2.40.30.10 292 372 1.3E-16 T 19-04-2016 AMF_RS06315 7cb32e1b74736602a76690c7db0eea0c 379 PANTHER PTHR11933:SF10 19 370 3.4E-146 T 19-04-2016 AMF_RS08370 becb16116749c6217d5506660e94689f 123 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 6.7E-50 T 19-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08370 becb16116749c6217d5506660e94689f 123 Gene3D G3DSA:4.10.910.10 73 119 2.4E-25 T 19-04-2016 IPR027437 30s ribosomal protein S13, C-terminal AMF_RS08370 becb16116749c6217d5506660e94689f 123 Pfam PF00416 Ribosomal protein S13/S18 3 109 8.6E-28 T 19-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08370 becb16116749c6217d5506660e94689f 123 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 25.717 T 19-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08370 becb16116749c6217d5506660e94689f 123 SUPERFAMILY SSF46946 2 120 5.49E-42 T 19-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMF_RS08370 becb16116749c6217d5506660e94689f 123 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 19-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_RS08370 becb16116749c6217d5506660e94689f 123 Gene3D G3DSA:1.10.8.50 2 71 4.6E-24 T 19-04-2016 AMF_RS08370 becb16116749c6217d5506660e94689f 123 PANTHER PTHR10871 2 112 2.2E-50 T 19-04-2016 AMF_RS08370 becb16116749c6217d5506660e94689f 123 PIRSF PIRSF002134 1 123 1.2E-38 T 19-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 PANTHER PTHR11265 1 291 2.0E-120 T 19-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 3 290 34.682 T 19-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 PANTHER PTHR11265:SF0 1 291 2.0E-120 T 19-04-2016 AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 289 2.1E-89 T 19-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 PIRSF PIRSF004486 1 291 2.7E-102 T 19-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 SUPERFAMILY SSF81799 110 210 2.88E-30 T 19-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 SUPERFAMILY SSF53335 210 290 9.5E-42 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 SUPERFAMILY SSF53335 3 109 9.5E-42 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 Gene3D G3DSA:1.10.150.170 109 212 6.3E-32 T 19-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 Pfam PF01795 MraW methylase family 2 289 2.7E-92 T 19-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 Gene3D G3DSA:3.40.50.150 213 290 3.9E-44 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07345 e10e75b8c697d2aa8e1ed68123ad79e9 291 Gene3D G3DSA:3.40.50.150 3 106 3.9E-44 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 153 294 2.0E-26 T 19-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 SUPERFAMILY SSF53671 11 298 2.49E-44 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 251 260 8.5E-5 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 8.5E-5 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 132 143 8.5E-5 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 PANTHER PTHR11405:SF1 33 293 1.3E-31 T 19-04-2016 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 Gene3D G3DSA:3.40.50.1370 141 285 1.6E-20 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 PANTHER PTHR11405 33 293 1.3E-31 T 19-04-2016 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 41 143 5.4E-16 T 19-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 Gene3D G3DSA:3.40.50.1370 30 140 6.7E-21 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00102 Ornithine carbamoyltransferase signature 277 288 4.7E-7 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00102 Ornithine carbamoyltransferase signature 121 135 4.7E-7 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 4.7E-7 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 4.7E-7 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMF_RS09575 4597c68b74c7faefa1831d2c98ada8ab 302 PRINTS PR00102 Ornithine carbamoyltransferase signature 219 229 4.7E-7 T 19-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 282 6.5E-63 T 19-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 19-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 PANTHER PTHR10025 4 280 2.7E-141 T 19-04-2016 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 SUPERFAMILY SSF53223 3 121 3.07E-40 T 19-04-2016 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 Gene3D G3DSA:3.40.192.10 6 140 1.1E-46 T 19-04-2016 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 SUPERFAMILY SSF51735 122 280 2.02E-47 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 2.5E-39 T 19-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 286 37.347 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 263 271 - T 19-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.3E-79 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 1.3E-79 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 242 258 1.3E-79 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 259 277 1.3E-79 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 1.3E-79 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 1.3E-79 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.3E-79 T 19-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 AMF_RS05740 91737b19d1290773d739a6f696ed5f90 299 Gene3D G3DSA:3.40.50.720 141 267 1.1E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 1 256 28.25 T 19-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 PANTHER PTHR20836:SF0 1 256 2.3E-66 T 19-04-2016 AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 123 255 3.0E-38 T 19-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 255 5.2E-65 T 19-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 PIRSF PIRSF000161 1 257 3.2E-73 T 19-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 120 2.5E-26 T 19-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 SUPERFAMILY SSF51735 1 121 1.28E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 SUPERFAMILY SSF51735 227 255 1.28E-40 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 SUPERFAMILY SSF55347 122 227 8.94E-28 T 19-04-2016 AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 Gene3D G3DSA:3.40.50.720 1 128 2.3E-14 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 144 161 - T 19-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 PANTHER PTHR20836 1 256 2.3E-66 T 19-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS08295 29aeeae775e96e8a66266e0292737d27 257 Gene3D G3DSA:3.30.360.10 129 224 3.5E-29 T 19-04-2016 AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 2 395 1.2E-182 T 19-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 Pfam PF06689 ClpX C4-type zinc finger 10 46 5.0E-18 T 19-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 PANTHER PTHR11262 2 395 1.0E-221 T 19-04-2016 AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 PANTHER PTHR11262:SF4 2 395 1.0E-221 T 19-04-2016 AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 SMART SM01086 307 396 1.1E-27 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 404 48.73 T 19-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 307 376 8.2E-12 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 SUPERFAMILY SSF52540 57 395 5.94E-71 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 SUPERFAMILY SSF57716 9 44 1.85E-10 T 19-04-2016 AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 SMART SM00382 104 257 2.2E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 Pfam PF07724 AAA domain (Cdc48 subfamily) 105 300 4.8E-48 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 Gene3D G3DSA:3.40.50.300 284 301 8.3E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 Gene3D G3DSA:3.40.50.300 59 246 8.3E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 SMART SM00994 8 47 7.8E-21 T 19-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMF_RS06215 c5e0861223125892b6d46386131c15b3 405 Gene3D G3DSA:1.10.8.60 307 394 1.6E-31 T 19-04-2016 AMF_RS06120 e527a19814e9b20c39c46475bd42c706 1127 Pfam PF02811 PHP domain 8 169 7.3E-25 T 19-04-2016 IPR004013 PHP domain GO:0003824 AMF_RS06120 e527a19814e9b20c39c46475bd42c706 1127 Gene3D G3DSA:3.20.20.140 6 254 3.8E-19 T 19-04-2016 AMF_RS06120 e527a19814e9b20c39c46475bd42c706 1127 PANTHER PTHR32294 3 1123 0.0 T 19-04-2016 AMF_RS06120 e527a19814e9b20c39c46475bd42c706 1127 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1000 0.0 T 19-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS06120 e527a19814e9b20c39c46475bd42c706 1127 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 287 715 2.3E-167 T 19-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS06120 e527a19814e9b20c39c46475bd42c706 1127 Pfam PF14579 Helix-hairpin-helix motif 788 875 1.8E-21 T 19-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS06120 e527a19814e9b20c39c46475bd42c706 1127 PANTHER PTHR32294:SF0 3 1123 0.0 T 19-04-2016 AMF_RS06120 e527a19814e9b20c39c46475bd42c706 1127 SUPERFAMILY SSF89550 6 258 5.69E-14 T 19-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 AMF_RS06120 e527a19814e9b20c39c46475bd42c706 1127 SMART SM00481 7 74 1.4E-18 T 19-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 240 256 4.7E-35 T 19-04-2016 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 4.7E-35 T 19-04-2016 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 293 4.7E-35 T 19-04-2016 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 4.7E-35 T 19-04-2016 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 4.7E-35 T 19-04-2016 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 13 318 1.4E-115 T 19-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PANTHER PTHR22912 1 321 6.0E-144 T 19-04-2016 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 SUPERFAMILY SSF51905 6 317 2.44E-46 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 141 161 - T 19-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 Gene3D G3DSA:3.50.50.60 116 312 9.5E-35 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 201 217 1.9E-74 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 242 263 1.9E-74 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 149 173 1.9E-74 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 281 299 1.9E-74 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 66 76 1.9E-74 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 13 35 1.9E-74 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 120 1.9E-74 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 46 61 1.9E-74 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 134 146 1.9E-74 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 PANTHER PTHR22912:SF48 1 321 6.0E-144 T 19-04-2016 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 307 5.3E-44 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS06960 ba08ae095444985dc22389f1b365b28d 325 Gene3D G3DSA:3.50.50.60 12 115 7.3E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS09755 b3643d509e30d66ee20898f72b5bd1a5 166 SUPERFAMILY SSF50447 1 84 6.47E-15 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS09755 b3643d509e30d66ee20898f72b5bd1a5 166 Gene3D G3DSA:2.40.30.60 1 84 5.8E-17 T 19-04-2016 IPR002676 RimM protein GO:0006364 AMF_RS09755 b3643d509e30d66ee20898f72b5bd1a5 166 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 1 161 21.369 T 19-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMF_RS09755 b3643d509e30d66ee20898f72b5bd1a5 166 Gene3D G3DSA:2.30.30.240 91 159 1.2E-10 T 19-04-2016 AMF_RS09755 b3643d509e30d66ee20898f72b5bd1a5 166 SUPERFAMILY SSF50346 91 159 4.71E-11 T 19-04-2016 IPR011033 PRC-barrel-like AMF_RS09755 b3643d509e30d66ee20898f72b5bd1a5 166 PANTHER PTHR33692 1 159 6.0E-31 T 19-04-2016 AMF_RS09755 b3643d509e30d66ee20898f72b5bd1a5 166 Pfam PF01782 RimM N-terminal domain 4 81 7.3E-17 T 19-04-2016 IPR002676 RimM protein GO:0006364 AMF_RS09755 b3643d509e30d66ee20898f72b5bd1a5 166 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 1 159 2.4E-35 T 19-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMF_RS09755 b3643d509e30d66ee20898f72b5bd1a5 166 Pfam PF05239 PRC-barrel domain 88 159 1.5E-6 T 19-04-2016 IPR027275 PRC-barrel domain AMF_RS06945 56cd4086a513498add1430ad08351810 337 SUPERFAMILY SSF52317 51 77 7.86E-17 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS06945 56cd4086a513498add1430ad08351810 337 SUPERFAMILY SSF52317 111 290 7.86E-17 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS06945 56cd4086a513498add1430ad08351810 337 Pfam PF07722 Peptidase C26 135 287 2.6E-4 T 19-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 AMF_RS06945 56cd4086a513498add1430ad08351810 337 Gene3D G3DSA:3.40.50.880 50 74 1.6E-9 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS06945 56cd4086a513498add1430ad08351810 337 Gene3D G3DSA:3.40.50.880 107 289 1.6E-9 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 224 1000 185.506 T 19-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 Pfam PF02769 AIR synthase related protein, C-terminal domain 443 593 6.2E-21 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 Pfam PF02769 AIR synthase related protein, C-terminal domain 829 969 4.8E-10 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 SUPERFAMILY SSF55326 631 817 1.06E-49 T 19-04-2016 AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 Pfam PF00586 AIR synthase related protein, N-terminal domain 704 782 0.0013 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 Pfam PF00586 AIR synthase related protein, N-terminal domain 308 428 7.9E-14 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 Gene3D G3DSA:3.30.1330.10 254 430 1.7E-29 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 SUPERFAMILY SSF56042 825 972 5.23E-25 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 PANTHER PTHR10099:SF2 165 971 1.8E-264 T 19-04-2016 AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 Gene3D G3DSA:3.30.1330.10 648 813 4.6E-38 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 SUPERFAMILY SSF55326 232 430 2.37E-39 T 19-04-2016 AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 PANTHER PTHR10099 165 971 1.8E-264 T 19-04-2016 AMF_RS08735 9b9a8feca4b53d7423f1554e6b6d35b2 1000 SUPERFAMILY SSF56042 442 659 2.09E-46 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 PANTHER PTHR11540:SF16 1 313 7.2E-132 T 19-04-2016 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 PANTHER PTHR11540 1 313 7.2E-132 T 19-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 Gene3D G3DSA:3.90.110.10 149 315 4.0E-57 T 19-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 PRINTS PR00086 L-lactate dehydrogenase signature 121 141 1.5E-26 T 19-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 PRINTS PR00086 L-lactate dehydrogenase signature 175 188 1.5E-26 T 19-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 PRINTS PR00086 L-lactate dehydrogenase signature 33 57 1.5E-26 T 19-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 PRINTS PR00086 L-lactate dehydrogenase signature 8 32 1.5E-26 T 19-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 PRINTS PR00086 L-lactate dehydrogenase signature 145 163 1.5E-26 T 19-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 PIRSF PIRSF000102 3 316 1.4E-101 T 19-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 7 313 5.2E-114 T 19-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 Hamap MF_00487 Malate dehydrogenase [mdh]. 7 317 40.387 T 19-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 SUPERFAMILY SSF51735 8 148 1.3E-46 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 SUPERFAMILY SSF56327 150 314 2.74E-52 T 19-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 Gene3D G3DSA:3.40.50.720 4 148 6.7E-50 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 8 147 6.3E-40 T 19-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AMF_RS07180 9431622d2bfd3dd5af61d7966bb66c3b 317 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 151 310 4.6E-28 T 19-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 ProSitePatterns PS00324 Aspartokinase signature. 6 14 - T 19-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 SUPERFAMILY SSF55021 251 326 4.58E-12 T 19-04-2016 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 Gene3D G3DSA:3.40.1160.10 3 246 4.7E-61 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 4 403 1.8E-104 T 19-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 Pfam PF00696 Amino acid kinase family 4 232 1.7E-39 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 PIRSF PIRSF000726 59 410 1.1E-98 T 19-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 PANTHER PTHR21499 3 408 5.1E-114 T 19-04-2016 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 Pfam PF13840 ACT domain 338 400 6.7E-10 T 19-04-2016 IPR027795 GATS-like ACT domain AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 SUPERFAMILY SSF53633 5 244 1.31E-61 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 PRINTS PR00474 Glutamate 5-kinase family signature 112 133 5.3E-5 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 PRINTS PR00474 Glutamate 5-kinase family signature 207 227 5.3E-5 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 PRINTS PR00474 Glutamate 5-kinase family signature 34 48 5.3E-5 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 PRINTS PR00474 Glutamate 5-kinase family signature 155 182 5.3E-5 T 19-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 PANTHER PTHR21499:SF27 3 408 5.1E-114 T 19-04-2016 AMF_RS08825 8a8c762a40488e5614a9cb50cbb5258a 412 SUPERFAMILY SSF55021 330 406 4.58E-19 T 19-04-2016 AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PANTHER PTHR24321:SF6 4 244 1.3E-45 T 19-04-2016 AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PANTHER PTHR24321 4 244 1.3E-45 T 19-04-2016 AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 Gene3D G3DSA:3.40.50.720 1 244 1.0E-86 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.3E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.3E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.3E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.3E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.3E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.3E-44 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 19-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 SUPERFAMILY SSF51735 6 244 6.67E-86 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 3.0E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.0E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 3.0E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 1.9E-65 T 19-04-2016 AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 188 7.0E-5 T 19-04-2016 AMF_RS07260 1da12690f99e55a0385c5ece4bbaf872 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 10 242 1.5E-90 T 19-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 AMF_RS06575 b7f187d81f115b8458b720612dc0183b 119 PANTHER PTHR23089 5 114 2.2E-31 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMF_RS06575 b7f187d81f115b8458b720612dc0183b 119 PRINTS PR00332 Histidine triad family signature 36 54 6.6E-18 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMF_RS06575 b7f187d81f115b8458b720612dc0183b 119 PRINTS PR00332 Histidine triad family signature 15 31 6.6E-18 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMF_RS06575 b7f187d81f115b8458b720612dc0183b 119 PRINTS PR00332 Histidine triad family signature 103 113 6.6E-18 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMF_RS06575 b7f187d81f115b8458b720612dc0183b 119 ProSitePatterns PS00892 HIT domain signature. 96 114 - T 19-04-2016 IPR019808 Histidine triad, conserved site AMF_RS06575 b7f187d81f115b8458b720612dc0183b 119 Gene3D G3DSA:3.30.428.10 8 117 4.3E-31 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMF_RS06575 b7f187d81f115b8458b720612dc0183b 119 Pfam PF01230 HIT domain 21 115 1.1E-23 T 19-04-2016 IPR001310 Histidine triad (HIT) protein AMF_RS06575 b7f187d81f115b8458b720612dc0183b 119 SUPERFAMILY SSF54197 7 117 5.95E-30 T 19-04-2016 IPR011146 HIT-like domain GO:0003824 AMF_RS06255 9a1b3951f76cd7e4d1561f2d14bb01eb 418 PANTHER PTHR22777 2 410 1.7E-122 T 19-04-2016 AMF_RS06255 9a1b3951f76cd7e4d1561f2d14bb01eb 418 SUPERFAMILY SSF56176 333 414 6.27E-18 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMF_RS06255 9a1b3951f76cd7e4d1561f2d14bb01eb 418 Gene3D G3DSA:3.30.465.10 314 408 8.3E-22 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMF_RS06255 9a1b3951f76cd7e4d1561f2d14bb01eb 418 Pfam PF03471 Transporter associated domain 337 410 9.4E-18 T 19-04-2016 IPR005170 Transporter-associated domain AMF_RS06255 9a1b3951f76cd7e4d1561f2d14bb01eb 418 SUPERFAMILY SSF54631 192 331 2.44E-28 T 19-04-2016 AMF_RS06255 9a1b3951f76cd7e4d1561f2d14bb01eb 418 Gene3D G3DSA:3.10.580.10 184 313 5.5E-19 T 19-04-2016 AMF_RS06255 9a1b3951f76cd7e4d1561f2d14bb01eb 418 SMART SM01091 335 412 1.3E-21 T 19-04-2016 IPR005170 Transporter-associated domain AMF_RS06255 9a1b3951f76cd7e4d1561f2d14bb01eb 418 Pfam PF01595 Domain of unknown function DUF21 3 177 5.8E-40 T 19-04-2016 IPR002550 Domain of unknown function DUF21 AMF_RS06255 9a1b3951f76cd7e4d1561f2d14bb01eb 418 Pfam PF00571 CBS domain 197 252 0.0015 T 19-04-2016 IPR000644 CBS domain AMF_RS06255 9a1b3951f76cd7e4d1561f2d14bb01eb 418 Pfam PF00571 CBS domain 274 319 2.2E-5 T 19-04-2016 IPR000644 CBS domain AMF_RS09970 a4f9f49de774fac047b7398a80fd63bf 373 SUPERFAMILY SSF53335 144 332 1.23E-26 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS09970 a4f9f49de774fac047b7398a80fd63bf 373 PANTHER PTHR10108:SF721 59 290 3.0E-14 T 19-04-2016 AMF_RS09970 a4f9f49de774fac047b7398a80fd63bf 373 Pfam PF13649 Methyltransferase domain 190 287 1.9E-14 T 19-04-2016 AMF_RS09970 a4f9f49de774fac047b7398a80fd63bf 373 Pfam PF13181 Tetratricopeptide repeat 90 122 5.2E-6 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMF_RS09970 a4f9f49de774fac047b7398a80fd63bf 373 SMART SM00028 89 122 2.0E-6 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMF_RS09970 a4f9f49de774fac047b7398a80fd63bf 373 Gene3D G3DSA:1.25.40.10 60 132 7.1E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS09970 a4f9f49de774fac047b7398a80fd63bf 373 SUPERFAMILY SSF48452 56 132 1.64E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS09970 a4f9f49de774fac047b7398a80fd63bf 373 Gene3D G3DSA:3.40.50.150 182 332 5.3E-22 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS09970 a4f9f49de774fac047b7398a80fd63bf 373 PANTHER PTHR10108 59 290 3.0E-14 T 19-04-2016 AMF_RS08480 a62edf8b5b2e64313ae3c77f091aa148 105 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 22.545 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMF_RS08480 a62edf8b5b2e64313ae3c77f091aa148 105 SUPERFAMILY SSF54999 5 102 3.01E-31 T 19-04-2016 IPR027486 Ribosomal protein S10 domain AMF_RS08480 a62edf8b5b2e64313ae3c77f091aa148 105 SMART SM01403 7 101 3.2E-41 T 19-04-2016 IPR027486 Ribosomal protein S10 domain AMF_RS08480 a62edf8b5b2e64313ae3c77f091aa148 105 PANTHER PTHR11700 1 102 1.3E-34 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMF_RS08480 a62edf8b5b2e64313ae3c77f091aa148 105 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 2.1E-9 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMF_RS08480 a62edf8b5b2e64313ae3c77f091aa148 105 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 2.1E-9 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMF_RS08480 a62edf8b5b2e64313ae3c77f091aa148 105 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 2.1E-9 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMF_RS08480 a62edf8b5b2e64313ae3c77f091aa148 105 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.1E-35 T 19-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 AMF_RS08480 a62edf8b5b2e64313ae3c77f091aa148 105 Pfam PF00338 Ribosomal protein S10p/S20e 8 101 2.7E-28 T 19-04-2016 IPR027486 Ribosomal protein S10 domain AMF_RS08480 a62edf8b5b2e64313ae3c77f091aa148 105 Gene3D G3DSA:3.30.70.600 4 102 1.6E-35 T 19-04-2016 IPR027486 Ribosomal protein S10 domain AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 Gene3D G3DSA:3.20.20.70 7 485 4.6E-190 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 SMART SM01240 8 473 1.8E-295 T 19-04-2016 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 297 309 - T 19-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 10 473 2.0E-152 T 19-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 PIRSF PIRSF000130 2 488 1.0E-195 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 PANTHER PTHR11911:SF6 7 283 2.2E-214 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 PANTHER PTHR11911:SF6 301 489 2.2E-214 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 Pfam PF00571 CBS domain 151 202 9.4E-8 T 19-04-2016 IPR000644 CBS domain AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 Pfam PF00571 CBS domain 96 142 1.3E-11 T 19-04-2016 IPR000644 CBS domain AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 SMART SM00116 159 207 3.4E-5 T 19-04-2016 IPR000644 CBS domain AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 SMART SM00116 97 146 6.4E-12 T 19-04-2016 IPR000644 CBS domain AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 9 486 79.068 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 PANTHER PTHR11911 7 283 2.2E-214 T 19-04-2016 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 PANTHER PTHR11911 301 489 2.2E-214 T 19-04-2016 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 9 454 8.9E-187 T 19-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 SUPERFAMILY SSF51412 218 477 2.75E-118 T 19-04-2016 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 SUPERFAMILY SSF51412 6 91 2.75E-118 T 19-04-2016 AMF_RS05450 41b7b5e563187306d2d00e9b58a76fe2 493 SUPERFAMILY SSF54631 65 205 7.07E-33 T 19-04-2016 AMF_RS08515 269b3b24c0a7823bcde73f1959065816 291 SUPERFAMILY SSF52096 183 243 2.39E-39 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMF_RS08515 269b3b24c0a7823bcde73f1959065816 291 SUPERFAMILY SSF52096 39 154 2.39E-39 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMF_RS08515 269b3b24c0a7823bcde73f1959065816 291 Pfam PF01343 Peptidase family S49 110 257 6.3E-41 T 19-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMF_RS08515 269b3b24c0a7823bcde73f1959065816 291 PANTHER PTHR33209 50 289 2.0E-65 T 19-04-2016 AMF_RS08515 269b3b24c0a7823bcde73f1959065816 291 Gene3D G3DSA:3.90.226.10 184 258 1.0E-39 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMF_RS08515 269b3b24c0a7823bcde73f1959065816 291 Gene3D G3DSA:3.90.226.10 24 146 1.0E-39 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMF_RS08515 269b3b24c0a7823bcde73f1959065816 291 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 52 253 8.3E-60 T 19-04-2016 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 PANTHER PTHR21071:SF4 1 296 2.2E-100 T 19-04-2016 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 SUPERFAMILY SSF56194 192 297 3.14E-37 T 19-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 SUPERFAMILY SSF56176 23 205 6.18E-40 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 PANTHER PTHR21071 1 296 2.2E-100 T 19-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 Gene3D G3DSA:3.90.78.10 226 297 7.9E-31 T 19-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 299 85.096 T 19-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 24 296 2.6E-57 T 19-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 Gene3D G3DSA:3.30.465.10 85 225 2.3E-39 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 197 295 2.8E-28 T 19-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 Pfam PF01565 FAD binding domain 36 163 1.7E-19 T 19-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMF_RS07685 dbcf2fc9b37c541116955e7f5bebc1dd 299 Gene3D G3DSA:3.30.43.10 16 83 2.8E-13 T 19-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AMF_RS08805 9f7f78ccab9c84a929deb317f0e6ed74 189 PIRSF PIRSF039093 5 189 1.6E-81 T 19-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMF_RS08805 9f7f78ccab9c84a929deb317f0e6ed74 189 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 12 187 1.8E-78 T 19-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMF_RS08805 9f7f78ccab9c84a929deb317f0e6ed74 189 Pfam PF00227 Proteasome subunit 11 186 3.4E-23 T 19-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 AMF_RS08805 9f7f78ccab9c84a929deb317f0e6ed74 189 Gene3D G3DSA:3.60.20.10 12 188 1.5E-79 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_RS08805 9f7f78ccab9c84a929deb317f0e6ed74 189 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 11 187 38.435 T 19-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMF_RS08805 9f7f78ccab9c84a929deb317f0e6ed74 189 PANTHER PTHR32194 1 189 8.8E-102 T 19-04-2016 AMF_RS08805 9f7f78ccab9c84a929deb317f0e6ed74 189 SUPERFAMILY SSF56235 8 187 1.2E-53 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_RS05625 2e9e8814ef6041bcaeee53834f275e22 386 PANTHER PTHR12124:SF42 11 264 3.0E-42 T 19-04-2016 AMF_RS05625 2e9e8814ef6041bcaeee53834f275e22 386 Pfam PF01612 3'-5' exonuclease 11 174 1.1E-32 T 19-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMF_RS05625 2e9e8814ef6041bcaeee53834f275e22 386 Gene3D G3DSA:3.30.420.10 7 191 9.7E-20 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS05625 2e9e8814ef6041bcaeee53834f275e22 386 PANTHER PTHR12124 11 264 3.0E-42 T 19-04-2016 AMF_RS05625 2e9e8814ef6041bcaeee53834f275e22 386 SMART SM00474 4 178 3.9E-20 T 19-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMF_RS05625 2e9e8814ef6041bcaeee53834f275e22 386 SUPERFAMILY SSF53098 5 200 5.66E-55 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS05625 2e9e8814ef6041bcaeee53834f275e22 386 SUPERFAMILY SSF47819 299 364 1.57E-9 T 19-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 AMF_RS09895 a624e63e54c2eed13d0bc5cd38ed5d2c 286 SUPERFAMILY SSF56176 196 277 9.82E-15 T 19-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AMF_RS09895 a624e63e54c2eed13d0bc5cd38ed5d2c 286 Gene3D G3DSA:3.30.465.10 178 278 3.2E-20 T 19-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AMF_RS09895 a624e63e54c2eed13d0bc5cd38ed5d2c 286 SUPERFAMILY SSF54631 63 192 6.95E-27 T 19-04-2016 AMF_RS09895 a624e63e54c2eed13d0bc5cd38ed5d2c 286 SMART SM01091 199 281 4.6E-15 T 19-04-2016 IPR005170 Transporter-associated domain AMF_RS09895 a624e63e54c2eed13d0bc5cd38ed5d2c 286 Pfam PF00571 CBS domain 133 183 2.5E-4 T 19-04-2016 IPR000644 CBS domain AMF_RS09895 a624e63e54c2eed13d0bc5cd38ed5d2c 286 PANTHER PTHR22777 56 277 8.6E-64 T 19-04-2016 AMF_RS09895 a624e63e54c2eed13d0bc5cd38ed5d2c 286 Gene3D G3DSA:3.10.580.10 55 177 1.2E-13 T 19-04-2016 AMF_RS09895 a624e63e54c2eed13d0bc5cd38ed5d2c 286 Pfam PF03471 Transporter associated domain 201 279 9.6E-13 T 19-04-2016 IPR005170 Transporter-associated domain AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 Pfam PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal 635 682 1.5E-13 T 19-04-2016 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal GO:0016651|GO:0051536|GO:0055114 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 SUPERFAMILY SSF53706 213 626 2.24E-93 T 19-04-2016 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 SUPERFAMILY SSF54862 76 211 4.06E-36 T 19-04-2016 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 145 155 - T 19-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 Gene3D G3DSA:3.10.20.30 2 56 5.1E-7 T 19-04-2016 IPR012675 Beta-grasp domain AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 19-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 75 2.6E-17 T 19-04-2016 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 PANTHER PTHR11615:SF115 3 690 1.6E-265 T 19-04-2016 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 SUPERFAMILY SSF54292 2 73 1.11E-20 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 117 1.6E-15 T 19-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 PANTHER PTHR11615 3 690 1.6E-265 T 19-04-2016 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 Gene3D G3DSA:3.40.50.740 494 629 1.2E-43 T 19-04-2016 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 Gene3D G3DSA:3.40.50.740 271 406 1.2E-43 T 19-04-2016 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 601 1.1E-218 T 19-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 Pfam PF00384 Molybdopterin oxidoreductase 271 604 2.1E-58 T 19-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 19-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 AMF_RS07465 a898e1aa41f509d8be4f83849be72294 691 SMART SM00929 83 123 4.8E-19 T 19-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 SUPERFAMILY SSF55931 1 288 1.83E-112 T 19-04-2016 AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 PANTHER PTHR11659:SF0 1 469 1.1E-240 T 19-04-2016 AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 1 467 34.316 T 19-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 136 150 - T 19-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 PANTHER PTHR11659 1 469 1.1E-240 T 19-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 Gene3D G3DSA:1.10.10.410 408 467 4.0E-5 T 19-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 SMART SM00845 320 466 1.8E-72 T 19-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 Pfam PF02934 GatB/GatE catalytic domain 1 280 2.3E-109 T 19-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 SUPERFAMILY SSF89095 289 393 4.97E-31 T 19-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 Pfam PF02637 GatB domain 321 466 1.2E-47 T 19-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 AMF_RS06640 8097138cdf760e4686c1f969748a955a 469 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 466 3.1E-160 T 19-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMF_RS08900 407aedc13d2b6576ea954faa350b31a2 175 Gene3D G3DSA:3.90.80.10 5 172 5.2E-54 T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMF_RS08900 407aedc13d2b6576ea954faa350b31a2 175 SUPERFAMILY SSF50324 4 171 6.8E-60 T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMF_RS08900 407aedc13d2b6576ea954faa350b31a2 175 PANTHER PTHR10286 9 170 7.7E-59 T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMF_RS08900 407aedc13d2b6576ea954faa350b31a2 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 33.672 T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMF_RS08900 407aedc13d2b6576ea954faa350b31a2 175 Pfam PF00719 Inorganic pyrophosphatase 18 172 1.5E-47 T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMF_RS08900 407aedc13d2b6576ea954faa350b31a2 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 19-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 AMF_RS09885 6aba674645604a20de741d229ceac323 272 PANTHER PTHR11403:SF7 1 271 1.0E-91 T 19-04-2016 AMF_RS09885 6aba674645604a20de741d229ceac323 272 Gene3D G3DSA:1.20.120.80 72 270 7.4E-59 T 19-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 AMF_RS09885 6aba674645604a20de741d229ceac323 272 PANTHER PTHR11403 1 271 1.0E-91 T 19-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 AMF_RS09885 6aba674645604a20de741d229ceac323 272 SUPERFAMILY SSF81452 2 270 1.57E-79 T 19-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 AMF_RS09885 6aba674645604a20de741d229ceac323 272 Gene3D G3DSA:1.10.287.70 2 66 8.6E-19 T 19-04-2016 AMF_RS09885 6aba674645604a20de741d229ceac323 272 Pfam PF00510 Cytochrome c oxidase subunit III 4 271 1.5E-76 T 19-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 AMF_RS06980 2eaa77618ede441a0e8df960df90c584 197 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 140 4.1E-29 T 19-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 AMF_RS06980 2eaa77618ede441a0e8df960df90c584 197 PANTHER PTHR11735 1 101 6.0E-12 T 19-04-2016 AMF_RS06980 2eaa77618ede441a0e8df960df90c584 197 Pfam PF00814 Glycoprotease family 33 102 9.2E-11 T 19-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS06980 2eaa77618ede441a0e8df960df90c584 197 Gene3D G3DSA:3.30.420.40 2 119 4.8E-21 T 19-04-2016 AMF_RS06980 2eaa77618ede441a0e8df960df90c584 197 PANTHER PTHR11735:SF11 1 101 6.0E-12 T 19-04-2016 AMF_RS06980 2eaa77618ede441a0e8df960df90c584 197 SUPERFAMILY SSF53067 3 104 2.75E-17 T 19-04-2016 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 SUPERFAMILY SSF52540 1 422 4.57E-154 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 SMART SM00788 3 423 3.2E-244 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 PANTHER PTHR11846 4 426 2.5E-180 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 Gene3D G3DSA:3.40.440.10 195 256 5.1E-60 T 19-04-2016 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 Gene3D G3DSA:3.40.440.10 2 93 5.1E-60 T 19-04-2016 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 Gene3D G3DSA:1.10.300.10 103 194 1.0E-25 T 19-04-2016 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 Pfam PF00709 Adenylosuccinate synthetase 4 422 1.7E-151 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 Gene3D G3DSA:3.90.170.10 266 422 4.0E-60 T 19-04-2016 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 19-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 19-04-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 426 172.253 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMF_RS08215 9c9c0b26ca06ba0b3d8cef32f963712a 426 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 422 4.2E-140 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 SUPERFAMILY SSF52151 9 131 6.54E-69 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 SUPERFAMILY SSF52151 199 314 6.54E-69 T 19-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 PANTHER PTHR10982 8 319 5.5E-109 T 19-04-2016 AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 Gene3D G3DSA:3.30.70.250 139 205 2.2E-20 T 19-04-2016 AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 PIRSF PIRSF000446 6 318 2.2E-75 T 19-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 Gene3D G3DSA:3.40.366.10 206 304 3.0E-61 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 Gene3D G3DSA:3.40.366.10 8 131 3.0E-61 T 19-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 SUPERFAMILY SSF55048 139 206 1.7E-14 T 19-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 12 316 3.9E-33 T 19-04-2016 IPR020801 Polyketide synthase, acyl transferase domain AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 9 299 1.4E-78 T 19-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMF_RS05465 ca09818d2598279c1bfda1db3b31a3d5 331 Pfam PF00698 Acyl transferase domain 10 295 4.9E-32 T 19-04-2016 IPR014043 Acyl transferase AMF_RS08160 5327ce487cbf2443902f934c52f1706d 158 SUPERFAMILY SSF55961 8 152 5.09E-26 T 19-04-2016 AMF_RS08160 5327ce487cbf2443902f934c52f1706d 158 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 15 144 1.1E-20 T 19-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain AMF_RS08160 5327ce487cbf2443902f934c52f1706d 158 Gene3D G3DSA:3.30.530.20 12 152 6.3E-35 T 19-04-2016 IPR023393 START-like domain AMF_RS08160 5327ce487cbf2443902f934c52f1706d 158 PANTHER PTHR12901 14 152 9.8E-27 T 19-04-2016 AMF_RS06230 40715deef558942012a73d484cdfdccf 301 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 294 29.665 T 19-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_RS06230 40715deef558942012a73d484cdfdccf 301 Gene3D G3DSA:3.40.50.170 1 201 1.9E-64 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_RS06230 40715deef558942012a73d484cdfdccf 301 PANTHER PTHR11138 2 293 1.9E-88 T 19-04-2016 AMF_RS06230 40715deef558942012a73d484cdfdccf 301 Gene3D G3DSA:3.10.25.10 205 297 1.3E-15 T 19-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_RS06230 40715deef558942012a73d484cdfdccf 301 Pfam PF00551 Formyl transferase 2 180 7.9E-38 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_RS06230 40715deef558942012a73d484cdfdccf 301 SUPERFAMILY SSF50486 201 296 3.34E-16 T 19-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 AMF_RS06230 40715deef558942012a73d484cdfdccf 301 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 2 298 3.9E-75 T 19-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_RS06230 40715deef558942012a73d484cdfdccf 301 Pfam PF02911 Formyl transferase, C-terminal domain 201 292 6.4E-18 T 19-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_RS06230 40715deef558942012a73d484cdfdccf 301 SUPERFAMILY SSF53328 1 201 1.18E-57 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_RS08640 e24dd07ac5287c0bd192efe25653aa95 230 SUPERFAMILY SSF47781 51 108 2.89E-6 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMF_RS08640 e24dd07ac5287c0bd192efe25653aa95 230 Pfam PF04002 RadC-like JAB domain 110 228 1.9E-38 T 19-04-2016 IPR025657 RadC-like JAB domain AMF_RS08640 e24dd07ac5287c0bd192efe25653aa95 230 SUPERFAMILY SSF102712 151 204 1.06E-5 T 19-04-2016 AMF_RS08640 e24dd07ac5287c0bd192efe25653aa95 230 Gene3D G3DSA:3.40.140.10 107 230 3.5E-42 T 19-04-2016 AMF_RS08640 e24dd07ac5287c0bd192efe25653aa95 230 PANTHER PTHR30471:SF3 4 230 4.7E-66 T 19-04-2016 AMF_RS08640 e24dd07ac5287c0bd192efe25653aa95 230 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 179 184 - T 19-04-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site AMF_RS08640 e24dd07ac5287c0bd192efe25653aa95 230 PANTHER PTHR30471 4 230 4.7E-66 T 19-04-2016 AMF_RS08640 e24dd07ac5287c0bd192efe25653aa95 230 TIGRFAM TIGR00608 radc: DNA repair protein RadC 17 230 5.8E-56 T 19-04-2016 IPR001405 RadC protein AMF_RS08640 e24dd07ac5287c0bd192efe25653aa95 230 Gene3D G3DSA:1.10.150.20 53 88 2.1E-5 T 19-04-2016 AMF_RS06155 a9ed4f122f674887f155044ae63e6dad 221 Pfam PF00308 Bacterial dnaA protein 82 193 2.7E-7 T 19-04-2016 IPR013317 Chromosomal replication initiator protein DnaA AMF_RS06155 a9ed4f122f674887f155044ae63e6dad 221 SUPERFAMILY SSF52540 12 195 3.23E-18 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06155 a9ed4f122f674887f155044ae63e6dad 221 PANTHER PTHR30050:SF5 45 216 3.4E-21 T 19-04-2016 AMF_RS06155 a9ed4f122f674887f155044ae63e6dad 221 Gene3D G3DSA:1.10.8.60 152 216 7.3E-13 T 19-04-2016 AMF_RS06155 a9ed4f122f674887f155044ae63e6dad 221 PANTHER PTHR30050 45 216 3.4E-21 T 19-04-2016 AMF_RS06155 a9ed4f122f674887f155044ae63e6dad 221 Gene3D G3DSA:3.40.50.300 13 146 1.0E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Gene3D G3DSA:3.30.230.10 597 775 4.5E-69 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 SMART SM00382 353 497 1.0E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 577 779 4.9E-88 T 19-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 683 691 - T 19-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Hamap MF_01973 Lon protease [lon]. 9 779 64.29 T 19-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 357 493 1.1E-19 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Gene3D G3DSA:3.40.50.300 320 504 2.2E-33 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 SUPERFAMILY SSF52540 313 568 1.58E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 TIGRFAM TIGR00763 lon: endopeptidase La 10 777 4.3E-273 T 19-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PIRSF PIRSF001174 1 781 0.0 T 19-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PANTHER PTHR10046 9 783 0.0 T 19-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 361 380 1.0E-52 T 19-04-2016 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 602 618 1.0E-52 T 19-04-2016 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 733 751 1.0E-52 T 19-04-2016 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 680 699 1.0E-52 T 19-04-2016 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 710 729 1.0E-52 T 19-04-2016 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 SUPERFAMILY SSF88697 8 202 1.57E-40 T 19-04-2016 IPR015947 PUA-like domain AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 PANTHER PTHR10046:SF43 9 783 0.0 T 19-04-2016 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 9 202 7.3E-35 T 19-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 Gene3D G3DSA:1.10.8.60 505 591 4.5E-27 T 19-04-2016 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 SMART SM00464 8 204 2.6E-52 T 19-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 AMF_RS06220 0ec3ba34c03b9de5b97f36dd05dfd8d0 808 SUPERFAMILY SSF54211 602 775 9.1E-55 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS06500 4a143035882d1d1684348f9f494d0af2 222 SUPERFAMILY SSF47616 70 217 1.99E-24 T 19-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like AMF_RS06500 4a143035882d1d1684348f9f494d0af2 222 Gene3D G3DSA:1.20.1050.10 94 218 1.7E-29 T 19-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like AMF_RS06500 4a143035882d1d1684348f9f494d0af2 222 SUPERFAMILY SSF52833 3 103 1.03E-27 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS06500 4a143035882d1d1684348f9f494d0af2 222 Pfam PF14497 Glutathione S-transferase, C-terminal domain 135 201 1.4E-5 T 19-04-2016 IPR004046 Glutathione S-transferase, C-terminal AMF_RS06500 4a143035882d1d1684348f9f494d0af2 222 Gene3D G3DSA:3.40.30.10 4 93 1.1E-30 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS06500 4a143035882d1d1684348f9f494d0af2 222 PANTHER PTHR11260:SF286 1 204 4.9E-54 T 19-04-2016 AMF_RS06500 4a143035882d1d1684348f9f494d0af2 222 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 77 1.0E-22 T 19-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMF_RS06500 4a143035882d1d1684348f9f494d0af2 222 PANTHER PTHR11260 1 204 4.9E-54 T 19-04-2016 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 Gene3D G3DSA:1.10.260.30 326 430 3.1E-31 T 19-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 SUPERFAMILY SSF52540 42 353 6.64E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 Gene3D G3DSA:1.20.120.140 2 89 3.1E-23 T 19-04-2016 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 Pfam PF02978 Signal peptide binding domain 326 426 2.5E-26 T 19-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 Pfam PF02881 SRP54-type protein, helical bundle domain 5 80 1.5E-14 T 19-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 Pfam PF00448 SRP54-type protein, GTPase domain 101 294 2.9E-66 T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 SMART SM00382 99 246 2.4E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 426 7.9E-154 T 19-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 SUPERFAMILY SSF47446 326 426 2.78E-29 T 19-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 PANTHER PTHR11564 1 433 1.2E-189 T 19-04-2016 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 SMART SM00963 1 86 5.9E-21 T 19-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 268 281 - T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 PANTHER PTHR11564:SF7 1 433 1.2E-189 T 19-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 SMART SM00962 100 295 6.9E-99 T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMF_RS08150 f9f36b585302b5c399d9117c6acec4a0 451 Gene3D G3DSA:3.40.50.300 97 296 2.8E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07840 6057735f4bf0672b11a0de0ee7b234f6 305 Gene3D G3DSA:1.10.287.890 198 278 4.2E-28 T 19-04-2016 AMF_RS07840 6057735f4bf0672b11a0de0ee7b234f6 305 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 4 294 22.079 T 19-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 AMF_RS07840 6057735f4bf0672b11a0de0ee7b234f6 305 SUPERFAMILY SSF52540 4 35 4.82E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07840 6057735f4bf0672b11a0de0ee7b234f6 305 SUPERFAMILY SSF52540 140 221 4.82E-7 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07840 6057735f4bf0672b11a0de0ee7b234f6 305 SUPERFAMILY SSF52540 5 149 2.22E-11 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07840 6057735f4bf0672b11a0de0ee7b234f6 305 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 6 279 4.4E-54 T 19-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 AMF_RS07840 6057735f4bf0672b11a0de0ee7b234f6 305 PANTHER PTHR11088 3 279 2.0E-50 T 19-04-2016 AMF_RS07840 6057735f4bf0672b11a0de0ee7b234f6 305 Gene3D G3DSA:3.40.50.300 3 169 2.4E-27 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07840 6057735f4bf0672b11a0de0ee7b234f6 305 Pfam PF01715 IPP transferase 37 278 1.5E-48 T 19-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 AMF_RS05685 d68bc57c8bdb125cccfe9bebad37d4ed 109 SMART SM01219 4 105 3.9E-19 T 19-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 AMF_RS05685 d68bc57c8bdb125cccfe9bebad37d4ed 109 Gene3D G3DSA:3.30.920.10 10 105 5.5E-18 T 19-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 AMF_RS05685 d68bc57c8bdb125cccfe9bebad37d4ed 109 Pfam PF01491 Frataxin-like domain 11 104 1.7E-14 T 19-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 AMF_RS05685 d68bc57c8bdb125cccfe9bebad37d4ed 109 SUPERFAMILY SSF55387 12 105 1.48E-20 T 19-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 AMF_RS09760 06a6e78c41df6e7a55e786ab59a2ff6a 235 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 24 218 1.0E-50 T 19-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMF_RS09760 06a6e78c41df6e7a55e786ab59a2ff6a 235 Gene3D G3DSA:1.10.1270.20 160 226 2.0E-23 T 19-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMF_RS09760 06a6e78c41df6e7a55e786ab59a2ff6a 235 PIRSF PIRSF000386 1 234 1.2E-86 T 19-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMF_RS09760 06a6e78c41df6e7a55e786ab59a2ff6a 235 PANTHER PTHR32125:SF1 1 226 1.8E-91 T 19-04-2016 AMF_RS09760 06a6e78c41df6e7a55e786ab59a2ff6a 235 Gene3D G3DSA:3.40.1280.10 1 159 8.8E-64 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMF_RS09760 06a6e78c41df6e7a55e786ab59a2ff6a 235 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 225 2.3E-77 T 19-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMF_RS09760 06a6e78c41df6e7a55e786ab59a2ff6a 235 SUPERFAMILY SSF75217 1 227 1.31E-88 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMF_RS09760 06a6e78c41df6e7a55e786ab59a2ff6a 235 PANTHER PTHR32125 1 226 1.8E-91 T 19-04-2016 AMF_RS09760 06a6e78c41df6e7a55e786ab59a2ff6a 235 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 235 92.318 T 19-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 PANTHER PTHR15184:SF34 190 447 4.1E-172 T 19-04-2016 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 PANTHER PTHR15184:SF34 3 173 4.1E-172 T 19-04-2016 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 Gene3D G3DSA:1.10.720.10 28 74 1.8E-15 T 19-04-2016 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 Pfam PF07498 Rho termination factor, N-terminal domain 32 73 3.3E-10 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 SMART SM00382 200 380 1.2E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS08795 6d541247a2423b87662d17239bc880df 448 SMART SM00357 79 145 4.7E-12 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 189 393 2.3E-27 T 19-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 SMART SM00959 32 74 1.7E-9 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 TIGRFAM TIGR00767 rho: transcription termination factor Rho 30 447 5.4E-193 T 19-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 Pfam PF07497 Rho termination factor, RNA-binding domain 80 150 1.9E-25 T 19-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 Gene3D G3DSA:3.40.50.300 158 446 5.8E-105 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08795 6d541247a2423b87662d17239bc880df 448 PANTHER PTHR15184 190 447 4.1E-172 T 19-04-2016 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 PANTHER PTHR15184 3 173 4.1E-172 T 19-04-2016 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 SUPERFAMILY SSF52540 118 401 4.18E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08795 6d541247a2423b87662d17239bc880df 448 Hamap MF_01884 Transcription termination factor Rho [rho]. 28 448 204.696 T 19-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 SUPERFAMILY SSF50249 78 149 2.4E-22 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08795 6d541247a2423b87662d17239bc880df 448 SUPERFAMILY SSF68912 28 73 1.22E-7 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMF_RS08795 6d541247a2423b87662d17239bc880df 448 Gene3D G3DSA:2.40.50.140 78 142 1.5E-28 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS10145 8ce4517c1784026545ea6a0c95fde312 422 Pfam PF01617 Surface antigen 54 420 6.7E-23 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS10145 8ce4517c1784026545ea6a0c95fde312 422 Gene3D G3DSA:2.40.160.20 301 381 6.7E-5 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS10145 8ce4517c1784026545ea6a0c95fde312 422 Gene3D G3DSA:2.40.160.20 101 168 6.7E-5 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 PANTHER PTHR11964:SF1 17 388 1.2E-155 T 19-04-2016 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 Gene3D G3DSA:3.30.300.10 142 241 8.8E-23 T 19-04-2016 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 PIRSF PIRSF000497 8 392 1.1E-140 T 19-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 241 381 7.4E-59 T 19-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 267 275 - T 19-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 16 385 4.6E-133 T 19-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 15 111 6.2E-33 T 19-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 Pfam PF02772 S-adenosylmethionine synthetase, central domain 124 239 8.3E-28 T 19-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 Gene3D G3DSA:3.30.300.10 252 387 9.8E-57 T 19-04-2016 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 SUPERFAMILY SSF55973 121 240 7.85E-36 T 19-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 SUPERFAMILY SSF55973 241 389 1.22E-59 T 19-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 PANTHER PTHR11964 17 388 1.2E-155 T 19-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 SUPERFAMILY SSF55973 14 120 1.06E-33 T 19-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 Gene3D G3DSA:3.30.300.10 21 141 2.1E-33 T 19-04-2016 AMF_RS09830 c4f21121a0ac35a749d687b79192d932 400 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 125 135 - T 19-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 PRINTS PR00423 Cell division protein FtsZ signature 195 217 9.8E-51 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 PRINTS PR00423 Cell division protein FtsZ signature 104 124 9.8E-51 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 PRINTS PR00423 Cell division protein FtsZ signature 218 239 9.8E-51 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 PRINTS PR00423 Cell division protein FtsZ signature 132 153 9.8E-51 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 17 339 1.1E-120 T 19-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 SUPERFAMILY SSF52490 18 214 5.23E-69 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 Pfam PF12327 FtsZ family, C-terminal domain 228 323 3.3E-37 T 19-04-2016 IPR024757 Cell division protein FtsZ, C-terminal AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 PANTHER PTHR30314:SF3 17 411 3.0E-179 T 19-04-2016 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 Gene3D G3DSA:3.30.1330.20 221 324 4.6E-48 T 19-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 SMART SM00864 19 211 2.2E-107 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 ProSitePatterns PS01135 FtsZ protein signature 2. 103 124 - T 19-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 19 180 1.3E-42 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 SUPERFAMILY SSF55307 210 324 1.99E-41 T 19-04-2016 IPR008280 Tubulin/FtsZ, C-terminal AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 Gene3D G3DSA:3.40.50.1440 19 220 2.1E-93 T 19-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 ProSitePatterns PS01134 FtsZ protein signature 1. 50 84 - T 19-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 15 359 36.362 T 19-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 SMART SM00865 213 331 1.4E-58 T 19-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain AMF_RS09730 e6dafa866ee54a7a9cb05f0685bb3cb3 412 PANTHER PTHR30314 17 411 3.0E-179 T 19-04-2016 AMF_RS05955 23b5a34b4c95f85554c8346c82a2bc65 542 SMART SM00849 19 213 9.6E-20 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMF_RS05955 23b5a34b4c95f85554c8346c82a2bc65 542 PANTHER PTHR11203 1 500 1.5E-147 T 19-04-2016 AMF_RS05955 23b5a34b4c95f85554c8346c82a2bc65 542 Gene3D G3DSA:3.60.15.10 9 253 3.7E-62 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMF_RS05955 23b5a34b4c95f85554c8346c82a2bc65 542 PANTHER PTHR11203:SF22 1 500 1.5E-147 T 19-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 AMF_RS05955 23b5a34b4c95f85554c8346c82a2bc65 542 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 350 406 5.9E-9 T 19-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain AMF_RS05955 23b5a34b4c95f85554c8346c82a2bc65 542 Pfam PF00753 Metallo-beta-lactamase superfamily 21 161 2.6E-11 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMF_RS05955 23b5a34b4c95f85554c8346c82a2bc65 542 SUPERFAMILY SSF56281 9 419 2.16E-75 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMF_RS05810 fcd1d35f229b29520e5b163703c4a655 195 PANTHER PTHR34606 5 194 6.3E-16 T 19-04-2016 AMF_RS05810 fcd1d35f229b29520e5b163703c4a655 195 SMART SM00749 127 190 1.8E-10 T 19-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria AMF_RS05810 fcd1d35f229b29520e5b163703c4a655 195 SMART SM00749 51 114 0.089 T 19-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria AMF_RS05810 fcd1d35f229b29520e5b163703c4a655 195 Pfam PF04972 BON domain 46 111 5.0E-15 T 19-04-2016 IPR007055 BON domain AMF_RS05810 fcd1d35f229b29520e5b163703c4a655 195 Pfam PF04972 BON domain 123 188 3.6E-11 T 19-04-2016 IPR007055 BON domain AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 5 1086 13.648 T 19-04-2016 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 50 61 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 20 659 3.4E-186 T 19-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Gene3D G3DSA:1.10.730.10 678 869 2.0E-38 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 588 597 2.7E-29 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 43 54 2.7E-29 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 413 428 2.7E-29 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 233 256 2.7E-29 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 548 561 2.7E-29 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PANTHER PTHR11946 1 254 0.0 T 19-04-2016 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PANTHER PTHR11946 522 977 0.0 T 19-04-2016 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PANTHER PTHR11946 278 504 0.0 T 19-04-2016 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 SUPERFAMILY SSF50677 204 415 2.93E-45 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Gene3D G3DSA:3.40.50.620 10 196 1.1E-145 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Gene3D G3DSA:3.40.50.620 419 661 1.1E-145 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 SUPERFAMILY SSF52374 415 660 2.6E-129 T 19-04-2016 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 SUPERFAMILY SSF52374 9 200 2.6E-129 T 19-04-2016 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 10 881 6.4E-255 T 19-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 SUPERFAMILY SSF47323 685 939 9.16E-45 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PANTHER PTHR11946:SF87 522 977 0.0 T 19-04-2016 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PANTHER PTHR11946:SF87 278 504 0.0 T 19-04-2016 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 PANTHER PTHR11946:SF87 1 254 0.0 T 19-04-2016 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Gene3D G3DSA:3.90.740.10 234 418 7.9E-49 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMF_RS07635 2e0fdd42c9dc3dfaaea23f37f15c2400 1101 Pfam PF08264 Anticodon-binding domain of tRNA 737 876 2.0E-21 T 19-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 361 387 1.2E-55 T 19-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 210 1.2E-55 T 19-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 246 266 1.2E-55 T 19-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 108 126 1.2E-55 T 19-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 128 151 1.2E-55 T 19-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 Pfam PF06723 MreB/Mbl protein 69 396 5.9E-140 T 19-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 Gene3D G3DSA:3.90.640.10 246 320 2.3E-26 T 19-04-2016 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 Gene3D G3DSA:3.30.420.40 324 378 2.3E-29 T 19-04-2016 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 Gene3D G3DSA:3.30.420.40 219 245 2.3E-29 T 19-04-2016 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 SUPERFAMILY SSF53067 69 207 1.68E-36 T 19-04-2016 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 PANTHER PTHR19375 67 387 8.6E-149 T 19-04-2016 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 PANTHER PTHR19375:SF117 67 387 8.6E-149 T 19-04-2016 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 SUPERFAMILY SSF53067 209 395 1.57E-45 T 19-04-2016 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 67 397 7.0E-146 T 19-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 AMF_RS07005 b8695dac21b42926265295a7633625f5 404 Gene3D G3DSA:3.30.420.40 69 218 8.6E-42 T 19-04-2016 AMF_RS05825 2bbee196ee672706821de319ba3e505f 257 Pfam PF03799 Cell division protein FtsQ 137 248 5.4E-12 T 19-04-2016 IPR005548 Cell division protein FtsQ/DivIB AMF_RS05825 2bbee196ee672706821de319ba3e505f 257 PANTHER PTHR35851:SF1 9 43 4.8E-15 T 19-04-2016 AMF_RS05825 2bbee196ee672706821de319ba3e505f 257 PANTHER PTHR35851:SF1 59 256 4.8E-15 T 19-04-2016 AMF_RS05825 2bbee196ee672706821de319ba3e505f 257 PANTHER PTHR35851 9 43 4.8E-15 T 19-04-2016 AMF_RS05825 2bbee196ee672706821de319ba3e505f 257 PANTHER PTHR35851 59 256 4.8E-15 T 19-04-2016 AMF_RS05825 2bbee196ee672706821de319ba3e505f 257 Pfam PF08478 POTRA domain, FtsQ-type 65 133 8.4E-15 T 19-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type AMF_RS06745 a5c35a5763da1fc9d968d02ffc08ba63 175 PANTHER PTHR11995 1 167 3.2E-119 T 19-04-2016 AMF_RS06745 a5c35a5763da1fc9d968d02ffc08ba63 175 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 31 166 2.2E-76 T 19-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 AMF_RS06745 a5c35a5763da1fc9d968d02ffc08ba63 175 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 52 159 3.3E-24 T 19-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 AMF_RS06745 a5c35a5763da1fc9d968d02ffc08ba63 175 SUPERFAMILY SSF56770 29 168 2.62E-65 T 19-04-2016 AMF_RS06745 a5c35a5763da1fc9d968d02ffc08ba63 175 PANTHER PTHR11995:SF19 1 167 3.2E-119 T 19-04-2016 AMF_RS06745 a5c35a5763da1fc9d968d02ffc08ba63 175 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 7 166 40.758 T 19-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 AMF_RS06745 a5c35a5763da1fc9d968d02ffc08ba63 175 Gene3D G3DSA:3.40.50.700 37 163 3.6E-33 T 19-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 AMF_RS06745 a5c35a5763da1fc9d968d02ffc08ba63 175 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 133 149 - T 19-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 AMF_RS06070 f33cf470904a27396f00f256d482b1aa 353 SUPERFAMILY SSF51395 9 352 2.26E-94 T 19-04-2016 AMF_RS06070 f33cf470904a27396f00f256d482b1aa 353 PANTHER PTHR11938 13 351 1.1E-82 T 19-04-2016 AMF_RS06070 f33cf470904a27396f00f256d482b1aa 353 Gene3D G3DSA:3.20.20.70 12 352 1.7E-119 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS06070 f33cf470904a27396f00f256d482b1aa 353 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 288 308 - T 19-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 AMF_RS06070 f33cf470904a27396f00f256d482b1aa 353 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 11 351 1.6E-112 T 19-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS06070 f33cf470904a27396f00f256d482b1aa 353 Pfam PF01180 Dihydroorotate dehydrogenase 43 336 1.7E-86 T 19-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AMF_RS06070 f33cf470904a27396f00f256d482b1aa 353 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 78 97 - T 19-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 AMF_RS06070 f33cf470904a27396f00f256d482b1aa 353 PIRSF PIRSF000164 18 353 2.2E-94 T 19-04-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Reactome: REACT_1698 AMF_RS06070 f33cf470904a27396f00f256d482b1aa 353 PANTHER PTHR11938:SF47 13 351 1.1E-82 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 SUPERFAMILY SSF64484 15 935 0.0 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 SUPERFAMILY SSF64484 1122 1354 0.0 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 PANTHER PTHR19376 3 934 0.0 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 PANTHER PTHR19376 1294 1355 0.0 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 PANTHER PTHR19376 952 1146 0.0 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 PANTHER PTHR19376 1168 1253 0.0 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 14 1369 9.891 T 19-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:2.40.50.100 1146 1201 6.9E-5 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 SMART SM00663 235 515 9.3E-159 T 19-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 Pfam PF00623 RNA polymerase Rpb1, domain 2 345 486 5.3E-33 T 19-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 18 1010 0.0 T 19-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:2.40.40.20 350 377 3.1E-36 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 Gene3D G3DSA:2.40.40.20 418 490 3.1E-36 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 Pfam PF04997 RNA polymerase Rpb1, domain 1 14 343 8.2E-72 T 19-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 Pfam PF04998 RNA polymerase Rpb1, domain 5 757 1306 2.9E-68 T 19-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 Pfam PF05000 RNA polymerase Rpb1, domain 4 673 754 9.6E-17 T 19-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 PANTHER PTHR19376:SF32 3 934 0.0 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 PANTHER PTHR19376:SF32 1294 1355 0.0 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 PANTHER PTHR19376:SF32 952 1146 0.0 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 PANTHER PTHR19376:SF32 1168 1253 0.0 T 19-04-2016 AMF_RS06030 54e185304e51f9b0e6733049c5d158df 1415 Pfam PF04983 RNA polymerase Rpb1, domain 3 490 644 3.4E-23 T 19-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 SMART SM00898 2 116 1.5E-32 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 PANTHER PTHR22993:SF15 1 265 1.2E-85 T 19-04-2016 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 Pfam PF06827 Zinc finger found in FPG and IleRS 239 265 2.9E-7 T 19-04-2016 IPR010663 Zinc finger, FPG/IleRS-type AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 SMART SM01232 130 219 1.5E-36 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 SUPERFAMILY SSF46946 131 218 3.66E-24 T 19-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 115 2.9E-28 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 Gene3D G3DSA:1.10.8.50 130 265 1.7E-40 T 19-04-2016 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 PANTHER PTHR22993 1 265 1.2E-85 T 19-04-2016 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 SUPERFAMILY SSF57716 215 265 1.43E-12 T 19-04-2016 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 130 216 3.3E-21 T 19-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 SUPERFAMILY SSF81624 2 139 8.11E-32 T 19-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 265 8.6E-73 T 19-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMF_RS07890 5c6b7290f81d4be7b9aca757d5afb78e 279 Gene3D G3DSA:3.20.190.10 2 124 1.7E-30 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 423 25.916 T 19-04-2016 IPR026593 Protein translocase subunit SecY AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 Pfam PF00344 SecY translocase 68 406 1.3E-98 T 19-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 ProSitePatterns PS00755 Protein secY signature 1. 68 87 - T 19-04-2016 IPR030659 SecY conserved site AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PANTHER PTHR10906 14 428 2.2E-155 T 19-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 SUPERFAMILY SSF103491 8 414 7.59E-111 T 19-04-2016 IPR023201 SecY subunit domain AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 ProSitePatterns PS00756 Protein secY signature 2. 166 183 - T 19-04-2016 IPR030659 SecY conserved site AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PANTHER PTHR10906:SF2 14 428 2.2E-155 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PIRSF PIRSF004557 6 430 6.2E-113 T 19-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 173 196 4.2E-83 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 147 172 4.2E-83 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 15 33 4.2E-83 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 305 327 4.2E-83 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 360 378 4.2E-83 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 108 131 4.2E-83 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 392 410 4.2E-83 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 67 87 4.2E-83 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 265 284 4.2E-83 T 19-04-2016 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 14 416 7.7E-110 T 19-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 AMF_RS08380 bd322229a892fb342347e6beaf7d143f 433 Gene3D G3DSA:1.10.3370.10 13 427 9.0E-140 T 19-04-2016 IPR023201 SecY subunit domain AMF_RS06125 8842e4e2cef05a7a08f5adb141658b0d 462 PANTHER PTHR21090 41 394 3.3E-21 T 19-04-2016 AMF_RS06125 8842e4e2cef05a7a08f5adb141658b0d 462 SUPERFAMILY SSF55205 19 401 1.19E-54 T 19-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMF_RS06125 8842e4e2cef05a7a08f5adb141658b0d 462 PANTHER PTHR21090:SF5 41 394 3.3E-21 T 19-04-2016 AMF_RS06125 8842e4e2cef05a7a08f5adb141658b0d 462 Gene3D G3DSA:3.65.10.10 256 412 2.5E-19 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMF_RS06125 8842e4e2cef05a7a08f5adb141658b0d 462 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 28 394 2.9E-31 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMF_RS06125 8842e4e2cef05a7a08f5adb141658b0d 462 Gene3D G3DSA:3.65.10.10 38 255 6.0E-20 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 412 507 1.2E-20 T 19-04-2016 IPR025158 Mg chelatase-related protein, C-terminal domain AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 5 507 1.8E-151 T 19-04-2016 IPR004482 Mg chelatase-related protein AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 Gene3D G3DSA:3.30.230.10 5 167 7.4E-27 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 Pfam PF01078 Magnesium chelatase, subunit ChlI 200 401 1.0E-91 T 19-04-2016 IPR000523 Magnesium chelatase ChlI domain AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 PANTHER PTHR32039 1 183 3.0E-195 T 19-04-2016 AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 PANTHER PTHR32039 200 507 3.0E-195 T 19-04-2016 AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 SUPERFAMILY SSF52540 200 507 3.08E-42 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 326 339 4.4E-7 T 19-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 350 362 4.4E-7 T 19-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 298 312 4.4E-7 T 19-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 219 234 4.4E-7 T 19-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 PANTHER PTHR32039:SF7 1 183 3.0E-195 T 19-04-2016 IPR004482 Mg chelatase-related protein AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 PANTHER PTHR32039:SF7 200 507 3.0E-195 T 19-04-2016 IPR004482 Mg chelatase-related protein AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 Gene3D G3DSA:3.40.50.300 200 397 6.4E-47 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 142 5.2E-40 T 19-04-2016 AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 SMART SM00382 220 401 1.1E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS07420 bcecfc62e8c22175ecfc3036ae4cf342 514 SUPERFAMILY SSF54211 7 169 1.1E-29 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 844 0.0 T 19-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 Gene3D G3DSA:1.10.8.60 346 429 8.8E-37 T 19-04-2016 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 SMART SM00382 595 738 6.5E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 SMART SM00382 199 344 2.0E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 205 337 2.9E-12 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 764 842 2.6E-23 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 Pfam PF07724 AAA domain (Cdc48 subfamily) 594 758 3.1E-52 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 145 4.3E-5 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 8.5E-6 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 Gene3D G3DSA:3.40.50.300 551 771 2.1E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 PANTHER PTHR11638 1 872 0.0 T 19-04-2016 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 Gene3D G3DSA:3.40.50.300 161 342 2.7E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 629 647 - T 19-04-2016 IPR028299 ClpA/B, conserved site 2 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 PANTHER PTHR11638:SF18 1 872 0.0 T 19-04-2016 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 Gene3D G3DSA:1.10.1780.10 1 147 9.0E-34 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 SUPERFAMILY SSF52540 545 836 2.33E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 SUPERFAMILY SSF52540 160 523 8.26E-99 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 19-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 SMART SM01086 764 853 4.2E-29 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 673 691 1.9E-41 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 599 617 1.9E-41 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 706 720 1.9E-41 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 644 662 1.9E-41 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 Gene3D G3DSA:1.10.8.60 772 857 1.8E-26 T 19-04-2016 AMF_RS08660 0fd712ea32e20d097e27e8a1f56a4fe5 872 SUPERFAMILY SSF81923 4 156 5.0E-33 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMF_RS05135 9f3855d999150949aa921303ec9a1914 560 TIGRFAM TIGR00337 PyrG: CTP synthase 9 531 2.3E-214 T 19-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 AMF_RS05135 9f3855d999150949aa921303ec9a1914 560 Pfam PF06418 CTP synthase N-terminus 10 271 1.0E-115 T 19-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 AMF_RS05135 9f3855d999150949aa921303ec9a1914 560 Gene3D G3DSA:3.40.50.300 8 290 5.8E-122 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05135 9f3855d999150949aa921303ec9a1914 560 Pfam PF00117 Glutamine amidotransferase class-I 307 531 9.0E-51 T 19-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 AMF_RS05135 9f3855d999150949aa921303ec9a1914 560 Hamap MF_01227 CTP synthase [pyrG]. 9 537 45.906 T 19-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 AMF_RS05135 9f3855d999150949aa921303ec9a1914 560 PANTHER PTHR11550 2 530 9.2E-287 T 19-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 AMF_RS05135 9f3855d999150949aa921303ec9a1914 560 Gene3D G3DSA:3.40.50.880 296 537 4.2E-85 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS05135 9f3855d999150949aa921303ec9a1914 560 SUPERFAMILY SSF52317 296 538 7.31E-72 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS05135 9f3855d999150949aa921303ec9a1914 560 SUPERFAMILY SSF52540 9 276 4.25E-114 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 SUPERFAMILY SSF55060 163 281 8.92E-24 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 4 284 27.638 T 19-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 PANTHER PTHR20861:SF2 1 285 1.1E-47 T 19-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 PANTHER PTHR20861 1 285 1.1E-47 T 19-04-2016 AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 Gene3D G3DSA:3.30.230.10 5 157 3.4E-42 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 SUPERFAMILY SSF54211 4 156 7.59E-31 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 3 261 6.4E-51 T 19-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 Gene3D G3DSA:3.30.70.890 164 283 2.1E-21 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 PIRSF PIRSF010376 2 285 5.9E-68 T 19-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 Pfam PF08544 GHMP kinases C terminal 215 269 4.4E-10 T 19-04-2016 IPR013750 GHMP kinase, C-terminal domain AMF_RS06880 0506f40eb5bf86c00b549556fc93b26f 285 Pfam PF00288 GHMP kinases N terminal domain 89 141 1.1E-5 T 19-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMF_RS05680 a940e2fc4bf5726b201e777a520d0e80 430 Pfam PF00464 Serine hydroxymethyltransferase 13 386 1.1E-160 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMF_RS05680 a940e2fc4bf5726b201e777a520d0e80 430 SUPERFAMILY SSF53383 13 422 4.32E-169 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMF_RS05680 a940e2fc4bf5726b201e777a520d0e80 430 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 9 423 50.274 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMF_RS05680 a940e2fc4bf5726b201e777a520d0e80 430 PANTHER PTHR11680 1 429 7.7E-217 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMF_RS05680 a940e2fc4bf5726b201e777a520d0e80 430 PIRSF PIRSF000412 5 427 9.7E-164 T 19-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMF_RS05680 a940e2fc4bf5726b201e777a520d0e80 430 Gene3D G3DSA:3.90.1150.10 287 423 1.3E-45 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS05680 a940e2fc4bf5726b201e777a520d0e80 430 Gene3D G3DSA:3.40.640.10 39 286 1.4E-99 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMF_RS05680 a940e2fc4bf5726b201e777a520d0e80 430 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 224 240 - T 19-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 PANTHER PTHR15893 2 83 2.1E-39 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 SUPERFAMILY SSF110324 2 83 6.13E-32 T 19-04-2016 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 PRINTS PR00063 Ribosomal protein L27 signature 4 28 9.7E-34 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 PRINTS PR00063 Ribosomal protein L27 signature 29 53 9.7E-34 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 PRINTS PR00063 Ribosomal protein L27 signature 54 78 9.7E-34 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 Gene3D G3DSA:2.40.50.100 20 83 2.5E-28 T 19-04-2016 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 29 69 9.0E-18 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 25.412 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 Pfam PF01016 Ribosomal L27 protein 2 79 2.9E-35 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 19-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07315 9e2b650d7f3166dd2cec3f76900c5c3b 90 TIGRFAM TIGR00062 L27: ribosomal protein bL27 2 81 7.1E-33 T 19-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 PANTHER PTHR20852:SF15 4 140 1.2E-203 T 19-04-2016 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 PANTHER PTHR20852:SF15 159 468 1.2E-203 T 19-04-2016 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 17 97 1.0E-28 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 SUPERFAMILY SSF54368 5 101 1.7E-32 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 SUPERFAMILY SSF55931 105 466 1.77E-119 T 19-04-2016 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 SMART SM01230 104 378 5.8E-125 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 Gene3D G3DSA:3.10.20.70 5 107 6.1E-35 T 19-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 PANTHER PTHR20852 4 140 1.2E-203 T 19-04-2016 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 PANTHER PTHR20852 159 468 1.2E-203 T 19-04-2016 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 19-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 Pfam PF00120 Glutamine synthetase, catalytic domain 105 465 2.6E-122 T 19-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 7 466 1.4E-176 T 19-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMF_RS09530 8ae0e6b3edbe6558400c73a31e2e0e67 468 Gene3D G3DSA:3.30.590.10 108 455 3.2E-119 T 19-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 AMF_RS06925 9ca437aa1bf145067826af9982d7fea7 158 Pfam PF04386 Stringent starvation protein B 12 117 9.3E-25 T 19-04-2016 IPR007481 Stringent starvation protein B AMF_RS06925 9ca437aa1bf145067826af9982d7fea7 158 SUPERFAMILY SSF101738 3 116 3.14E-38 T 19-04-2016 IPR007481 Stringent starvation protein B AMF_RS06925 9ca437aa1bf145067826af9982d7fea7 158 Gene3D G3DSA:2.30.30.220 1 116 4.6E-41 T 19-04-2016 IPR007481 Stringent starvation protein B AMF_RS07755 56a16b705876490d5517597e41447dda 117 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 11 114 4.3E-19 T 19-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 AMF_RS07755 56a16b705876490d5517597e41447dda 117 PANTHER PTHR33515 10 114 1.6E-14 T 19-04-2016 AMF_RS07755 56a16b705876490d5517597e41447dda 117 SUPERFAMILY SSF89919 9 114 1.96E-23 T 19-04-2016 IPR023799 Ribosome-binding factor A domain AMF_RS07755 56a16b705876490d5517597e41447dda 117 Gene3D G3DSA:3.30.300.20 11 115 4.9E-24 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMF_RS07755 56a16b705876490d5517597e41447dda 117 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 7 117 14.493 T 19-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 AMF_RS07755 56a16b705876490d5517597e41447dda 117 ProSitePatterns PS01319 Ribosome-binding factor A signature. 79 100 - T 19-04-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 AMF_RS07755 56a16b705876490d5517597e41447dda 117 Pfam PF02033 Ribosome-binding factor A 11 112 1.5E-21 T 19-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 AMF_RS07755 56a16b705876490d5517597e41447dda 117 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 15 100 5.0E-43 T 19-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 4.0E-35 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 4.0E-35 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 4.0E-35 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 4.0E-35 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 155 6.7E-54 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 PANTHER PTHR21342 1 156 5.2E-59 T 19-04-2016 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 PANTHER PTHR21342:SF1 1 156 5.2E-59 T 19-04-2016 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 55 2.6E-15 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 Gene3D G3DSA:3.40.50.620 2 156 6.0E-45 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 159 31.519 T 19-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 SUPERFAMILY SSF52374 2 157 4.83E-38 T 19-04-2016 AMF_RS06955 9320cc10ac258363853d8cdb4c401275 165 Pfam PF01467 Cytidylyltransferase-like 5 134 1.7E-17 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMF_RS09645 b8a44b08eb3edc31f2adc0a8f5cb7867 224 SMART SM00563 66 178 1.0E-20 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMF_RS09645 b8a44b08eb3edc31f2adc0a8f5cb7867 224 PANTHER PTHR10434 2 216 8.9E-32 T 19-04-2016 AMF_RS09645 b8a44b08eb3edc31f2adc0a8f5cb7867 224 Gene3D G3DSA:3.40.1130.10 63 151 4.5E-7 T 19-04-2016 AMF_RS09645 b8a44b08eb3edc31f2adc0a8f5cb7867 224 Pfam PF01553 Acyltransferase 60 174 2.2E-14 T 19-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AMF_RS09645 b8a44b08eb3edc31f2adc0a8f5cb7867 224 SUPERFAMILY SSF69593 5 206 8.76E-25 T 19-04-2016 AMF_RS06305 5358ea6486d3cd265e02590cf93a835c 377 PANTHER PTHR32039:SF8 21 373 6.3E-84 T 19-04-2016 AMF_RS06305 5358ea6486d3cd265e02590cf93a835c 377 PANTHER PTHR32039 21 373 6.3E-84 T 19-04-2016 AMF_RS06305 5358ea6486d3cd265e02590cf93a835c 377 SUPERFAMILY SSF102405 85 291 2.87E-35 T 19-04-2016 AMF_RS06305 5358ea6486d3cd265e02590cf93a835c 377 Gene3D G3DSA:3.40.50.450 116 260 1.8E-4 T 19-04-2016 AMF_RS06305 5358ea6486d3cd265e02590cf93a835c 377 Pfam PF02481 DNA recombination-mediator protein A 75 282 2.1E-69 T 19-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 AMF_RS06305 5358ea6486d3cd265e02590cf93a835c 377 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 74 290 1.4E-63 T 19-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 AMF_RS08770 53c4df0133801f1ef63f0ee69ccdfdb9 345 SUPERFAMILY SSF56042 174 343 6.13E-57 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMF_RS08770 53c4df0133801f1ef63f0ee69ccdfdb9 345 SUPERFAMILY SSF55326 2 169 7.48E-45 T 19-04-2016 AMF_RS08770 53c4df0133801f1ef63f0ee69ccdfdb9 345 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 3 336 3.9E-121 T 19-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08770 53c4df0133801f1ef63f0ee69ccdfdb9 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 178 343 2.4E-32 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMF_RS08770 53c4df0133801f1ef63f0ee69ccdfdb9 345 Gene3D G3DSA:3.90.650.10 174 342 1.1E-61 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMF_RS08770 53c4df0133801f1ef63f0ee69ccdfdb9 345 PANTHER PTHR10520:SF10 4 340 4.6E-179 T 19-04-2016 AMF_RS08770 53c4df0133801f1ef63f0ee69ccdfdb9 345 Gene3D G3DSA:3.30.1330.10 16 170 6.8E-56 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMF_RS08770 53c4df0133801f1ef63f0ee69ccdfdb9 345 PANTHER PTHR10520 4 340 4.6E-179 T 19-04-2016 AMF_RS08770 53c4df0133801f1ef63f0ee69ccdfdb9 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 60 164 7.9E-16 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMF_RS08770 53c4df0133801f1ef63f0ee69ccdfdb9 345 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 2 345 41.863 T 19-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 2 152 1.7E-38 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 Gene3D G3DSA:3.30.420.10 2 157 7.6E-43 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 4.4E-22 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 3 16 4.4E-22 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 4.4E-22 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 4.4E-22 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 140 152 4.4E-22 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 2 157 1.9E-31 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 155 32.1 T 19-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 SUPERFAMILY SSF53098 1 158 3.34E-37 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS09880 f8d3f59a7fbb9162d9f7d382e70b2734 164 PANTHER PTHR30194 1 154 1.2E-39 T 19-04-2016 AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 Gene3D G3DSA:3.30.70.270 296 451 3.6E-53 T 19-04-2016 AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 SMART SM00267 283 453 1.4E-51 T 19-04-2016 IPR000160 GGDEF domain AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 SUPERFAMILY SSF52172 149 289 1.22E-16 T 19-04-2016 IPR011006 CheY-like superfamily AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 292 449 2.3E-50 T 19-04-2016 IPR000160 GGDEF domain AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 PANTHER PTHR24423 4 160 1.4E-37 T 19-04-2016 AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 Pfam PF00990 Diguanylate cyclase, GGDEF domain 295 447 9.6E-45 T 19-04-2016 IPR000160 GGDEF domain AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 SMART SM00448 157 270 5.8E-7 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 SMART SM00448 3 117 6.0E-40 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 Pfam PF00072 Response regulator receiver domain 5 117 1.5E-28 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 Pfam PF00072 Response regulator receiver domain 159 270 2.1E-10 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 SUPERFAMILY SSF55073 299 447 1.33E-45 T 19-04-2016 IPR029787 Nucleotide cyclase AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 SUPERFAMILY SSF52172 2 132 6.4E-39 T 19-04-2016 IPR011006 CheY-like superfamily AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 Gene3D G3DSA:3.40.50.2300 3 124 2.7E-42 T 19-04-2016 AMF_RS06815 880ad402c4836a2de1a02f0a339fc85e 455 Gene3D G3DSA:3.40.50.2300 154 284 8.0E-17 T 19-04-2016 AMF_RS05540 0fd407e0343f2e0fd9ef9770ca1e30dc 245 Gene3D G3DSA:3.40.1160.10 13 244 4.1E-72 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMF_RS05540 0fd407e0343f2e0fd9ef9770ca1e30dc 245 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 14 243 9.8E-91 T 19-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 AMF_RS05540 0fd407e0343f2e0fd9ef9770ca1e30dc 245 PIRSF PIRSF005650 10 245 7.7E-83 T 19-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 AMF_RS05540 0fd407e0343f2e0fd9ef9770ca1e30dc 245 Pfam PF00696 Amino acid kinase family 16 223 1.4E-27 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMF_RS05540 0fd407e0343f2e0fd9ef9770ca1e30dc 245 SUPERFAMILY SSF53633 13 244 1.83E-61 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMF_RS05540 0fd407e0343f2e0fd9ef9770ca1e30dc 245 PANTHER PTHR21499 13 245 1.7E-97 T 19-04-2016 AMF_RS05540 0fd407e0343f2e0fd9ef9770ca1e30dc 245 PANTHER PTHR21499:SF23 13 245 1.7E-97 T 19-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 AMF_RS05540 0fd407e0343f2e0fd9ef9770ca1e30dc 245 Hamap MF_01220_B Uridylate kinase [pyrH]. 12 244 41.883 T 19-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 AMF_RS09250 c8edcf41e457ff0472194f78629281b7 297 Gene3D G3DSA:1.20.1510.10 13 207 1.0E-51 T 19-04-2016 IPR027469 Cation efflux protein transmembrane domain AMF_RS09250 c8edcf41e457ff0472194f78629281b7 297 PANTHER PTHR11562 14 297 3.1E-89 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMF_RS09250 c8edcf41e457ff0472194f78629281b7 297 Pfam PF01545 Cation efflux family 18 207 2.7E-42 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMF_RS09250 c8edcf41e457ff0472194f78629281b7 297 Gene3D G3DSA:3.30.70.1350 215 289 3.7E-5 T 19-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain AMF_RS09250 c8edcf41e457ff0472194f78629281b7 297 PANTHER PTHR11562:SF17 14 297 3.1E-89 T 19-04-2016 AMF_RS09250 c8edcf41e457ff0472194f78629281b7 297 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 13 289 4.1E-81 T 19-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMF_RS09250 c8edcf41e457ff0472194f78629281b7 297 SUPERFAMILY SSF160240 211 290 1.7E-10 T 19-04-2016 AMF_RS09250 c8edcf41e457ff0472194f78629281b7 297 SUPERFAMILY SSF161111 12 208 4.58E-50 T 19-04-2016 AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 PANTHER PTHR10174:SF2 66 336 7.5E-58 T 19-04-2016 AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 SUPERFAMILY SSF55347 129 319 1.48E-69 T 19-04-2016 AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 SMART SM00859 3 119 5.3E-34 T 19-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 SUPERFAMILY SSF51735 3 157 9.06E-42 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 3 333 2.3E-120 T 19-04-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 Gene3D G3DSA:3.40.50.720 2 141 5.0E-49 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 118 7.7E-26 T 19-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 Gene3D G3DSA:3.30.360.10 142 314 2.0E-71 T 19-04-2016 AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 PANTHER PTHR10174 66 336 7.5E-58 T 19-04-2016 AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 PIRSF PIRSF000148 1 336 5.0E-120 T 19-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 332 31.517 T 19-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 AMF_RS09795 c2c865523d47a709ba186fde0f484786 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 318 4.9E-51 T 19-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Pfam PF00889 Elongation factor TS 70 291 5.5E-55 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Hamap MF_00050 Elongation factor Ts [tsf]. 1 291 54.191 T 19-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Gene3D G3DSA:1.10.286.20 207 249 4.8E-15 T 19-04-2016 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 SUPERFAMILY SSF46934 4 54 3.32E-15 T 19-04-2016 IPR009060 UBA-like GO:0005515 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 2 291 7.1E-71 T 19-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Gene3D G3DSA:3.30.479.20 153 201 6.3E-18 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Gene3D G3DSA:3.30.479.20 250 291 6.3E-18 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Gene3D G3DSA:1.10.8.10 1 54 2.3E-20 T 19-04-2016 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 SUPERFAMILY SSF54713 152 291 9.03E-34 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 Gene3D G3DSA:3.30.479.20 56 149 6.4E-12 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 SUPERFAMILY SSF54713 56 147 1.96E-13 T 19-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 19-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 AMF_RS07965 3e4754c0dddd881c777f3d7b5f5c5ce9 291 PANTHER PTHR11741 1 291 5.2E-97 T 19-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 SUPERFAMILY SSF52540 620 919 1.05E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 PANTHER PTHR32282:SF2 1 952 0.0 T 19-04-2016 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:1.20.1580.10 700 826 3.3E-48 T 19-04-2016 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:1.10.8.280 294 381 3.3E-12 T 19-04-2016 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:1.20.1580.10 412 485 7.0E-47 T 19-04-2016 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:1.20.1580.10 258 291 7.0E-47 T 19-04-2016 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:1.20.1580.10 90 127 7.0E-47 T 19-04-2016 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:3.30.1490.20 198 236 2.5E-12 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:3.30.1490.20 130 151 2.5E-12 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 ProSitePatterns PS00211 ABC transporters family signature. 495 509 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 PANTHER PTHR32282 1 952 0.0 T 19-04-2016 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 2 930 0.0 T 19-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 ProSitePatterns PS00211 ABC transporters family signature. 836 850 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:3.40.50.300 2 49 1.2E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:3.40.50.300 486 603 1.2E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:3.40.50.300 608 698 4.7E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 Gene3D G3DSA:3.40.50.300 827 948 4.7E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 SUPERFAMILY SSF52540 2 202 8.01E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06755 7f641dd13287880a80d3c3cceeeea643 952 SUPERFAMILY SSF52540 454 577 8.01E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07155 a9e9e0262597ce4e07d026134548b1c5 241 Gene3D G3DSA:3.20.20.70 2 240 1.9E-68 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS07155 a9e9e0262597ce4e07d026134548b1c5 241 Pfam PF00121 Triosephosphate isomerase 4 235 2.6E-57 T 19-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 AMF_RS07155 a9e9e0262597ce4e07d026134548b1c5 241 PANTHER PTHR21139 3 235 3.1E-61 T 19-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 AMF_RS07155 a9e9e0262597ce4e07d026134548b1c5 241 SUPERFAMILY SSF51351 3 239 1.96E-65 T 19-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 AMF_RS07155 a9e9e0262597ce4e07d026134548b1c5 241 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 1 238 28.606 T 19-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 AMF_RS08210 167752881db6187a8fc5c7f6a507c5b2 236 Gene3D G3DSA:3.30.1330.60 42 153 6.4E-27 T 19-04-2016 IPR006665 OmpA-like domain AMF_RS08210 167752881db6187a8fc5c7f6a507c5b2 236 Pfam PF00691 OmpA family 45 127 7.9E-14 T 19-04-2016 IPR006665 OmpA-like domain AMF_RS08210 167752881db6187a8fc5c7f6a507c5b2 236 PRINTS PR01021 OMPA domain signature 91 107 1.2E-15 T 19-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMF_RS08210 167752881db6187a8fc5c7f6a507c5b2 236 PRINTS PR01021 OMPA domain signature 46 68 1.2E-15 T 19-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMF_RS08210 167752881db6187a8fc5c7f6a507c5b2 236 PRINTS PR01021 OMPA domain signature 76 91 1.2E-15 T 19-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMF_RS08210 167752881db6187a8fc5c7f6a507c5b2 236 PANTHER PTHR30128 44 153 2.5E-24 T 19-04-2016 AMF_RS08210 167752881db6187a8fc5c7f6a507c5b2 236 SUPERFAMILY SSF103088 41 153 1.83E-25 T 19-04-2016 IPR006665 OmpA-like domain AMF_RS05590 12776c194d2d53bf2c51764a1fa898a1 277 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 8 260 6.8E-90 T 19-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 AMF_RS05590 12776c194d2d53bf2c51764a1fa898a1 277 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 3 260 39.07 T 19-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 AMF_RS05590 12776c194d2d53bf2c51764a1fa898a1 277 SUPERFAMILY SSF51621 5 260 1.57E-95 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMF_RS05590 12776c194d2d53bf2c51764a1fa898a1 277 Gene3D G3DSA:3.20.20.60 5 261 5.0E-103 T 19-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AMF_RS05590 12776c194d2d53bf2c51764a1fa898a1 277 Pfam PF02548 Ketopantoate hydroxymethyltransferase 6 255 1.7E-99 T 19-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 AMF_RS05590 12776c194d2d53bf2c51764a1fa898a1 277 PIRSF PIRSF000388 3 262 6.7E-99 T 19-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 AMF_RS05590 12776c194d2d53bf2c51764a1fa898a1 277 PANTHER PTHR20881 5 260 1.1E-119 T 19-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 Gene3D G3DSA:1.20.1640.10 130 302 7.3E-24 T 19-04-2016 AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 Pfam PF02355 Protein export membrane protein 119 289 2.3E-50 T 19-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 SUPERFAMILY SSF82866 127 290 3.01E-33 T 19-04-2016 AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 PANTHER PTHR30081 2 289 5.4E-51 T 19-04-2016 AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 PANTHER PTHR30081:SF8 2 289 5.4E-51 T 19-04-2016 AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 12 299 27.862 T 19-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 119 285 1.4E-46 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 PRINTS PR01755 Bacterial translocase SecF protein signature 202 220 5.1E-23 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 PRINTS PR01755 Bacterial translocase SecF protein signature 236 251 5.1E-23 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 PRINTS PR01755 Bacterial translocase SecF protein signature 39 54 5.1E-23 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 PRINTS PR01755 Bacterial translocase SecF protein signature 154 168 5.1E-23 T 19-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMF_RS09505 d02204f898d2fc4277076c6e193ed351 309 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 41 288 2.2E-61 T 19-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMF_RS06695 171044381ad18d89b043cb73f9f4b294 600 PANTHER PTHR30557:SF1 198 599 0.0 T 19-04-2016 AMF_RS06695 171044381ad18d89b043cb73f9f4b294 600 PANTHER PTHR30557:SF1 54 121 0.0 T 19-04-2016 AMF_RS06695 171044381ad18d89b043cb73f9f4b294 600 PANTHER PTHR30557:SF1 149 179 0.0 T 19-04-2016 AMF_RS06695 171044381ad18d89b043cb73f9f4b294 600 Pfam PF01964 Radical SAM ThiC family 157 595 1.4E-196 T 19-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 AMF_RS06695 171044381ad18d89b043cb73f9f4b294 600 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 156 600 54.885 T 19-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 AMF_RS06695 171044381ad18d89b043cb73f9f4b294 600 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 156 598 1.3E-206 T 19-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 AMF_RS06695 171044381ad18d89b043cb73f9f4b294 600 Pfam PF13667 ThiC-associated domain 54 122 1.5E-19 T 19-04-2016 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 AMF_RS06695 171044381ad18d89b043cb73f9f4b294 600 PANTHER PTHR30557 198 599 0.0 T 19-04-2016 AMF_RS06695 171044381ad18d89b043cb73f9f4b294 600 PANTHER PTHR30557 54 121 0.0 T 19-04-2016 AMF_RS06695 171044381ad18d89b043cb73f9f4b294 600 PANTHER PTHR30557 149 179 0.0 T 19-04-2016 AMF_RS08145 d106619fac1da61ff15d638274444673 296 Hamap MF_00367 GTPase Era [era]. 6 296 27.424 T 19-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 AMF_RS08145 d106619fac1da61ff15d638274444673 296 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 163 1.1E-17 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_RS08145 d106619fac1da61ff15d638274444673 296 SUPERFAMILY SSF52540 8 237 5.1E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08145 d106619fac1da61ff15d638274444673 296 Pfam PF07650 KH domain 208 283 3.0E-15 T 19-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 AMF_RS08145 d106619fac1da61ff15d638274444673 296 PANTHER PTHR11649 11 285 2.3E-83 T 19-04-2016 AMF_RS08145 d106619fac1da61ff15d638274444673 296 Pfam PF01926 50S ribosome-binding GTPase 11 125 1.8E-18 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS08145 d106619fac1da61ff15d638274444673 296 PANTHER PTHR11649:SF3 11 285 2.3E-83 T 19-04-2016 AMF_RS08145 d106619fac1da61ff15d638274444673 296 Gene3D G3DSA:3.30.300.20 190 286 6.3E-30 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMF_RS08145 d106619fac1da61ff15d638274444673 296 Gene3D G3DSA:3.40.50.300 5 171 5.4E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08145 d106619fac1da61ff15d638274444673 296 TIGRFAM TIGR00436 era: GTP-binding protein Era 11 278 3.3E-60 T 19-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 AMF_RS06725 4223cb7be3990fd89290a92219dd1aa9 228 SMART SM00934 5 221 4.0E-76 T 19-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS06725 4223cb7be3990fd89290a92219dd1aa9 228 PANTHER PTHR32119:SF2 1 227 2.9E-70 T 19-04-2016 AMF_RS06725 4223cb7be3990fd89290a92219dd1aa9 228 SUPERFAMILY SSF51366 3 225 3.53E-64 T 19-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AMF_RS06725 4223cb7be3990fd89290a92219dd1aa9 228 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 57 70 - T 19-04-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS06725 4223cb7be3990fd89290a92219dd1aa9 228 Gene3D G3DSA:3.20.20.70 2 225 2.5E-68 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS06725 4223cb7be3990fd89290a92219dd1aa9 228 PANTHER PTHR32119 1 227 2.9E-70 T 19-04-2016 AMF_RS06725 4223cb7be3990fd89290a92219dd1aa9 228 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 7 221 2.5E-47 T 19-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS06725 4223cb7be3990fd89290a92219dd1aa9 228 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 220 2.3E-35 T 19-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS08890 423884bbf38b3ca67fca5677bb721e30 215 Gene3D G3DSA:2.10.109.10 119 213 2.0E-10 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMF_RS08890 423884bbf38b3ca67fca5677bb721e30 215 SUPERFAMILY SSF47413 9 74 1.1E-10 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMF_RS08890 423884bbf38b3ca67fca5677bb721e30 215 SUPERFAMILY SSF51306 123 213 4.84E-13 T 19-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C AMF_RS08890 423884bbf38b3ca67fca5677bb721e30 215 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 13 76 1.3E-10 T 19-04-2016 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 AMF_RS08890 423884bbf38b3ca67fca5677bb721e30 215 Gene3D G3DSA:1.10.260.40 9 73 7.7E-14 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMF_RS08890 423884bbf38b3ca67fca5677bb721e30 215 SMART SM00530 13 69 1.3E-9 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 SUPERFAMILY SSF46600 616 649 3.53E-7 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Pfam PF00271 Helicase conserved C-terminal domain 441 543 1.1E-18 T 19-04-2016 IPR001650 Helicase, C-terminal AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Pfam PF02151 UvrB/uvrC motif 619 648 2.3E-7 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Gene3D G3DSA:3.40.50.300 276 336 1.9E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Gene3D G3DSA:3.40.50.300 5 88 1.9E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Gene3D G3DSA:3.40.50.300 386 406 1.9E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 PANTHER PTHR24029 1 648 0.0 T 19-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Gene3D G3DSA:3.30.2060.10 160 237 3.3E-10 T 19-04-2016 AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 648 1.3E-292 T 19-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 SMART SM00487 8 423 1.2E-19 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 SMART SM00490 458 544 1.8E-19 T 19-04-2016 IPR001650 Helicase, C-terminal AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Pfam PF12344 Ultra-violet resistance protein B 550 591 1.9E-19 T 19-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Pfam PF04851 Type III restriction enzyme, res subunit 12 91 1.0E-7 T 19-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Gene3D G3DSA:4.10.860.10 619 649 5.4E-9 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 SUPERFAMILY SSF52540 36 81 3.33E-34 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 SUPERFAMILY SSF52540 457 571 3.33E-34 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 SUPERFAMILY SSF52540 2 411 1.41E-123 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 651 40.572 T 19-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AMF_RS09685 6a0c5b438919751892da2e3abb4eec98 651 Gene3D G3DSA:3.40.50.300 418 580 3.6E-37 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06350 bc7e72efe3b3c49f9d70101ba3ac0fb8 168 PIRSF PIRSF033913 2 153 3.2E-24 T 19-04-2016 IPR024199 Uncharacterised conserved protein, DsbB-like AMF_RS06350 bc7e72efe3b3c49f9d70101ba3ac0fb8 168 Gene3D G3DSA:1.20.1550.10 2 148 1.2E-12 T 19-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain AMF_RS06350 bc7e72efe3b3c49f9d70101ba3ac0fb8 168 Pfam PF02600 Disulfide bond formation protein DsbB 4 146 1.6E-24 T 19-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AMF_RS06350 bc7e72efe3b3c49f9d70101ba3ac0fb8 168 SUPERFAMILY SSF158442 7 146 5.1E-26 T 19-04-2016 AMF_RS05725 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 67 87 5.4E-45 T 19-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS05725 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 50 67 5.4E-45 T 19-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS05725 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 125 145 5.4E-45 T 19-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS05725 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 104 124 5.4E-45 T 19-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS05725 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 160 186 5.4E-45 T 19-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS05725 51d7492720f98d827585d04714dafe68 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 208 232 5.4E-45 T 19-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS05725 51d7492720f98d827585d04714dafe68 250 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 50 231 1.9E-64 T 19-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS05725 51d7492720f98d827585d04714dafe68 250 PANTHER PTHR30071 19 228 4.2E-57 T 19-04-2016 AMF_RS05725 51d7492720f98d827585d04714dafe68 250 Pfam PF01578 Cytochrome C assembly protein 26 188 8.0E-26 T 19-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMF_RS08270 94931fb25b2150b129516a2e6577a984 322 SUPERFAMILY SSF53901 6 321 5.24E-64 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMF_RS08270 94931fb25b2150b129516a2e6577a984 322 PANTHER PTHR34069:SF2 1 322 1.4E-112 T 19-04-2016 AMF_RS08270 94931fb25b2150b129516a2e6577a984 322 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 189 6.3E-30 T 19-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMF_RS08270 94931fb25b2150b129516a2e6577a984 322 Gene3D G3DSA:3.40.47.10 1 161 1.0E-63 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMF_RS08270 94931fb25b2150b129516a2e6577a984 322 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 6 321 5.0E-117 T 19-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMF_RS08270 94931fb25b2150b129516a2e6577a984 322 PANTHER PTHR34069 1 322 1.4E-112 T 19-04-2016 AMF_RS08270 94931fb25b2150b129516a2e6577a984 322 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 233 321 3.3E-32 T 19-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMF_RS08270 94931fb25b2150b129516a2e6577a984 322 Gene3D G3DSA:3.40.47.10 162 321 1.0E-43 T 19-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 AMF_RS08270 94931fb25b2150b129516a2e6577a984 322 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 322 67.545 T 19-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 Pfam PF03144 Elongation factor Tu domain 2 207 277 9.6E-8 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 Hamap MF_00071 Elongation factor 4 [lepA]. 1 598 275.944 T 19-04-2016 IPR006297 Elongation factor 4 GO:0005525 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 TIGRFAM TIGR01393 lepA: elongation factor 4 5 596 1.2E-275 T 19-04-2016 IPR006297 Elongation factor 4 GO:0005525 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 Gene3D G3DSA:2.40.30.10 195 291 2.1E-22 T 19-04-2016 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 SUPERFAMILY SSF50447 167 290 5.08E-29 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 PRINTS PR00315 GTP-binding elongation factor signature 76 86 8.2E-14 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 PRINTS PR00315 GTP-binding elongation factor signature 128 137 8.2E-14 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 PRINTS PR00315 GTP-binding elongation factor signature 8 21 8.2E-14 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 PRINTS PR00315 GTP-binding elongation factor signature 51 59 8.2E-14 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 PRINTS PR00315 GTP-binding elongation factor signature 92 103 8.2E-14 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 SUPERFAMILY SSF54980 295 372 1.62E-17 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 PANTHER PTHR23115:SF175 3 375 8.4E-296 T 19-04-2016 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 PANTHER PTHR23115:SF175 399 597 8.4E-296 T 19-04-2016 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 PANTHER PTHR23115 3 375 8.4E-296 T 19-04-2016 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 PANTHER PTHR23115 399 597 8.4E-296 T 19-04-2016 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 SMART SM00838 403 486 0.0031 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 Gene3D G3DSA:3.40.50.300 4 194 1.9E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 SUPERFAMILY SSF54980 401 495 1.06E-22 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 Gene3D G3DSA:3.30.70.870 295 371 4.2E-24 T 19-04-2016 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 Pfam PF14492 Elongation Factor G, domain II 295 367 2.5E-6 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 SUPERFAMILY SSF52540 3 207 5.57E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 Pfam PF00679 Elongation factor G C-terminus 402 485 2.0E-18 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 Gene3D G3DSA:3.30.70.240 403 491 1.7E-18 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 176 6.5E-17 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 Pfam PF00009 Elongation factor Tu GTP binding domain 5 183 1.3E-48 T 19-04-2016 AMF_RS07030 0fa5903383263659f6f01d8cca08ed10 598 Pfam PF06421 GTP-binding protein LepA C-terminus 489 595 3.8E-48 T 19-04-2016 IPR013842 GTP-binding protein LepA, C-terminal AMF_RS07640 3f9431a17ac0c80b9f1027ac260fa3f5 160 SUPERFAMILY SSF52833 5 155 1.04E-46 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS07640 3f9431a17ac0c80b9f1027ac260fa3f5 160 PANTHER PTHR10681 4 155 1.0E-47 T 19-04-2016 AMF_RS07640 3f9431a17ac0c80b9f1027ac260fa3f5 160 PIRSF PIRSF000239 1 159 1.4E-26 T 19-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 AMF_RS07640 3f9431a17ac0c80b9f1027ac260fa3f5 160 Pfam PF00578 AhpC/TSA family 6 134 6.3E-33 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMF_RS07640 3f9431a17ac0c80b9f1027ac260fa3f5 160 Gene3D G3DSA:3.40.30.10 6 156 3.3E-47 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 31 134 5.3E-32 T 19-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 172 183 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 33 253 1.4E-82 T 19-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 81 89 - T 19-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 Gene3D G3DSA:1.10.1060.10 131 259 1.9E-46 T 19-04-2016 AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 PANTHER PTHR11921 19 259 8.7E-155 T 19-04-2016 AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 Pfam PF13183 4Fe-4S dicluster domain 170 242 5.4E-9 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 SUPERFAMILY SSF46548 131 258 5.41E-37 T 19-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 PANTHER PTHR11921:SF27 19 259 8.7E-155 T 19-04-2016 AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 Gene3D G3DSA:3.10.20.30 25 129 9.3E-42 T 19-04-2016 IPR012675 Beta-grasp domain AMF_RS05700 85d0cc1b120dd69cb99c5bcc45badae3 262 SUPERFAMILY SSF54292 29 129 9.42E-31 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMF_RS07885 d0c92839844ce7ba88dee2d2b2cca08c 510 PANTHER PTHR22855 3 510 4.9E-299 T 19-04-2016 AMF_RS07885 d0c92839844ce7ba88dee2d2b2cca08c 510 Gene3D G3DSA:3.90.226.10 6 252 1.2E-78 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMF_RS07885 d0c92839844ce7ba88dee2d2b2cca08c 510 Gene3D G3DSA:3.90.226.10 255 510 4.1E-99 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMF_RS07885 d0c92839844ce7ba88dee2d2b2cca08c 510 SUPERFAMILY SSF52096 5 250 2.28E-74 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMF_RS07885 d0c92839844ce7ba88dee2d2b2cca08c 510 SUPERFAMILY SSF52096 224 510 8.84E-89 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMF_RS07885 d0c92839844ce7ba88dee2d2b2cca08c 510 Pfam PF01039 Carboxyl transferase domain 27 508 2.8E-188 T 19-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 AMF_RS07885 d0c92839844ce7ba88dee2d2b2cca08c 510 PANTHER PTHR22855:SF14 3 510 4.9E-299 T 19-04-2016 AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 PANTHER PTHR24222:SF0 19 590 1.1E-203 T 19-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 PANTHER PTHR24222 19 590 1.1E-203 T 19-04-2016 AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 Gene3D G3DSA:1.20.1560.10 20 320 6.1E-38 T 19-04-2016 AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 Pfam PF00664 ABC transporter transmembrane region 33 289 4.4E-9 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 23 565 8.2E-202 T 19-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 Gene3D G3DSA:3.40.50.300 349 565 1.3E-57 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 SUPERFAMILY SSF52540 328 565 9.37E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 SUPERFAMILY SSF90123 13 327 6.8E-42 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 Pfam PF00005 ABC transporter 357 504 7.7E-27 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_RS08580 19f0dc51bc6be9cc27297aa7be8c6dc6 796 SMART SM00382 365 567 3.2E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 287 294 - T 19-04-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 SMART SM01209 101 293 7.5E-109 T 19-04-2016 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 418 7.4E-143 T 19-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 SMART SM01210 327 419 2.0E-41 T 19-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 293 6.5E-68 T 19-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 1.8E-28 T 19-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 Gene3D G3DSA:3.90.600.10 328 418 1.4E-31 T 19-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 Gene3D G3DSA:3.30.1490.20 121 188 2.7E-24 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 329 418 5.8E-26 T 19-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 419 36.569 T 19-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 Gene3D G3DSA:3.30.470.20 189 320 2.7E-50 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 Gene3D G3DSA:3.40.50.20 2 93 1.4E-30 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 PANTHER PTHR10520 1 417 3.7E-209 T 19-04-2016 AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 SUPERFAMILY SSF52440 1 100 4.6E-29 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 SUPERFAMILY SSF51246 326 418 7.14E-26 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMF_RS08855 cda5a4049021aed5465617cc9bcbeef2 420 SUPERFAMILY SSF56059 102 319 3.01E-54 T 19-04-2016 AMF_RS06265 645f5f3e65eeac9e22b077d02a6e1083 746 SUPERFAMILY SSF46785 686 744 1.9E-15 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMF_RS06265 645f5f3e65eeac9e22b077d02a6e1083 746 Pfam PF01580 FtsK/SpoIIIE family 367 585 3.0E-62 T 19-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMF_RS06265 645f5f3e65eeac9e22b077d02a6e1083 746 Gene3D G3DSA:3.40.50.300 538 650 4.1E-88 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06265 645f5f3e65eeac9e22b077d02a6e1083 746 Gene3D G3DSA:3.40.50.300 343 505 4.1E-88 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06265 645f5f3e65eeac9e22b077d02a6e1083 746 PANTHER PTHR22683:SF41 200 744 1.3E-211 T 19-04-2016 AMF_RS06265 645f5f3e65eeac9e22b077d02a6e1083 746 Pfam PF09397 Ftsk gamma domain 687 744 3.7E-21 T 19-04-2016 IPR018541 FtsK gamma domain AMF_RS06265 645f5f3e65eeac9e22b077d02a6e1083 746 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 13 140 1.2E-13 T 19-04-2016 IPR025199 DNA translocase FtsK, 4TM region AMF_RS06265 645f5f3e65eeac9e22b077d02a6e1083 746 PANTHER PTHR22683 200 744 1.3E-211 T 19-04-2016 AMF_RS06265 645f5f3e65eeac9e22b077d02a6e1083 746 SMART SM00843 685 746 1.3E-23 T 19-04-2016 IPR018541 FtsK gamma domain AMF_RS06265 645f5f3e65eeac9e22b077d02a6e1083 746 SUPERFAMILY SSF52540 351 656 2.94E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10045 ab123aa3eaa72241e4b677fe37fe23d3 218 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 11 186 1.7E-47 T 19-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMF_RS10045 ab123aa3eaa72241e4b677fe37fe23d3 218 Pfam PF01386 Ribosomal L25p family 11 96 1.9E-22 T 19-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMF_RS10045 ab123aa3eaa72241e4b677fe37fe23d3 218 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 7 189 28.112 T 19-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMF_RS10045 ab123aa3eaa72241e4b677fe37fe23d3 218 Gene3D G3DSA:2.40.240.10 7 98 2.2E-27 T 19-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 AMF_RS10045 ab123aa3eaa72241e4b677fe37fe23d3 218 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 7 99 2.0E-48 T 19-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMF_RS10045 ab123aa3eaa72241e4b677fe37fe23d3 218 SUPERFAMILY SSF50715 6 196 1.74E-52 T 19-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 AMF_RS10045 ab123aa3eaa72241e4b677fe37fe23d3 218 PANTHER PTHR33284 11 216 8.4E-61 T 19-04-2016 AMF_RS10045 ab123aa3eaa72241e4b677fe37fe23d3 218 Gene3D G3DSA:2.170.120.20 102 195 3.3E-26 T 19-04-2016 IPR020057 Ribosomal protein L25, beta domain AMF_RS10045 ab123aa3eaa72241e4b677fe37fe23d3 218 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 104 189 1.1E-25 T 19-04-2016 IPR020057 Ribosomal protein L25, beta domain AMF_RS09200 cd7f2e3b165c758409106796b317e1b2 74 Pfam PF00137 ATP synthase subunit C 8 69 1.9E-11 T 19-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMF_RS09200 cd7f2e3b165c758409106796b317e1b2 74 PANTHER PTHR10031 5 73 4.6E-13 T 19-04-2016 AMF_RS09200 cd7f2e3b165c758409106796b317e1b2 74 PRINTS PR00124 ATP synthase C subunit signature 45 70 3.7E-16 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMF_RS09200 cd7f2e3b165c758409106796b317e1b2 74 PRINTS PR00124 ATP synthase C subunit signature 7 26 3.7E-16 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMF_RS09200 cd7f2e3b165c758409106796b317e1b2 74 PRINTS PR00124 ATP synthase C subunit signature 28 43 3.7E-16 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMF_RS09200 cd7f2e3b165c758409106796b317e1b2 74 PANTHER PTHR10031:SF0 5 73 4.6E-13 T 19-04-2016 AMF_RS09200 cd7f2e3b165c758409106796b317e1b2 74 Gene3D G3DSA:1.20.20.10 6 71 3.5E-18 T 19-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 AMF_RS09200 cd7f2e3b165c758409106796b317e1b2 74 Hamap MF_01396 ATP synthase subunit c [atpH]. 5 72 12.802 T 19-04-2016 AMF_RS09200 cd7f2e3b165c758409106796b317e1b2 74 SUPERFAMILY SSF81333 4 71 1.14E-15 T 19-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 149 169 - T 19-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 SMART SM00729 145 364 4.0E-53 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 443 68.678 T 19-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 Gene3D G3DSA:3.80.30.20 144 371 7.2E-77 T 19-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 PANTHER PTHR11918:SF43 1 442 6.1E-159 T 19-04-2016 AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 5 440 1.9E-140 T 19-04-2016 AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 432 2.5E-142 T 19-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 PANTHER PTHR11918 1 442 6.1E-159 T 19-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 Pfam PF00919 Uncharacterized protein family UPF0004 6 101 1.0E-28 T 19-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 SUPERFAMILY SSF102114 119 368 1.83E-59 T 19-04-2016 AMF_RS06545 6565ede83f5d66bee10e8b9554f3b976 454 Pfam PF04055 Radical SAM superfamily 149 322 9.3E-33 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMF_RS06075 52f360733649200715fa24a85ba471f8 195 SUPERFAMILY SSF56420 13 171 3.27E-39 T 19-04-2016 IPR023635 Peptide deformylase AMF_RS06075 52f360733649200715fa24a85ba471f8 195 PIRSF PIRSF004749 2 187 1.4E-31 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS06075 52f360733649200715fa24a85ba471f8 195 Pfam PF01327 Polypeptide deformylase 9 169 3.7E-35 T 19-04-2016 IPR023635 Peptide deformylase AMF_RS06075 52f360733649200715fa24a85ba471f8 195 Hamap MF_00163 Peptide deformylase [def]. 2 186 20.751 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS06075 52f360733649200715fa24a85ba471f8 195 PRINTS PR01576 Peptide deformylase signature 121 139 5.7E-20 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS06075 52f360733649200715fa24a85ba471f8 195 PRINTS PR01576 Peptide deformylase signature 108 119 5.7E-20 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS06075 52f360733649200715fa24a85ba471f8 195 PRINTS PR01576 Peptide deformylase signature 140 169 5.7E-20 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS06075 52f360733649200715fa24a85ba471f8 195 PRINTS PR01576 Peptide deformylase signature 34 63 5.7E-20 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS06075 52f360733649200715fa24a85ba471f8 195 Gene3D G3DSA:3.90.45.10 13 171 9.2E-40 T 19-04-2016 IPR023635 Peptide deformylase AMF_RS06075 52f360733649200715fa24a85ba471f8 195 PANTHER PTHR10458 13 162 4.5E-35 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 PANTHER PTHR24322:SF317 155 187 1.2E-56 T 19-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 PANTHER PTHR24322:SF317 8 139 1.2E-56 T 19-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 PIRSF PIRSF000094 1 256 3.7E-107 T 19-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.1E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 Gene3D G3DSA:3.40.50.720 3 197 5.6E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 SUPERFAMILY SSF51735 2 251 4.32E-65 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 248 1.9E-86 T 19-04-2016 AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 PANTHER PTHR24322 155 187 1.2E-56 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS06650 bbfc7bba427c84339c8ca2b362655097 267 PANTHER PTHR24322 8 139 1.2E-56 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS05600 1e767797883c8114d1db7bc295360065 428 Gene3D G3DSA:3.65.10.10 24 230 4.9E-58 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMF_RS05600 1e767797883c8114d1db7bc295360065 428 SUPERFAMILY SSF55205 11 427 8.83E-118 T 19-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMF_RS05600 1e767797883c8114d1db7bc295360065 428 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 6 425 1.0E-148 T 19-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS05600 1e767797883c8114d1db7bc295360065 428 Gene3D G3DSA:3.65.10.10 231 425 1.2E-51 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMF_RS05600 1e767797883c8114d1db7bc295360065 428 PANTHER PTHR21090 15 427 6.8E-133 T 19-04-2016 AMF_RS05600 1e767797883c8114d1db7bc295360065 428 PANTHER PTHR21090:SF19 15 427 6.8E-133 T 19-04-2016 AMF_RS05600 1e767797883c8114d1db7bc295360065 428 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 3 427 39.009 T 19-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS05600 1e767797883c8114d1db7bc295360065 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 13 417 6.7E-86 T 19-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 221 314 1.79E-22 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 PANTHER PTHR10724:SF6 51 555 1.4E-141 T 19-04-2016 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 385 482 3.07E-14 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 293 405 3.0E-25 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 400 477 2.8E-11 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 492 559 7.4E-6 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 313 385 2.4E-19 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 51 119 9.0E-6 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 135 203 1.3E-4 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SMART SM00316 222 298 5.8E-22 T 19-04-2016 IPR022967 RNA-binding domain, S1 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 48 144 2.5E-15 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 Gene3D G3DSA:2.40.50.140 133 205 1.2E-11 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 53 71 7.9E-55 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 71 85 7.9E-55 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 250 271 7.9E-55 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 116 135 7.9E-55 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 140 156 7.9E-55 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 328 347 7.9E-55 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 368 386 7.9E-55 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 PRINTS PR00681 Ribosomal protein S1 signature 158 175 7.9E-55 T 19-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 473 558 2.42E-5 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 PANTHER PTHR10724 51 555 1.4E-141 T 19-04-2016 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 Pfam PF00575 S1 RNA binding domain 138 203 7.0E-7 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 Pfam PF00575 S1 RNA binding domain 221 298 1.3E-15 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 Pfam PF00575 S1 RNA binding domain 398 477 4.9E-7 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 Pfam PF00575 S1 RNA binding domain 50 118 4.3E-5 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 Pfam PF00575 S1 RNA binding domain 314 385 4.1E-17 T 19-04-2016 IPR003029 S1 domain GO:0003676 AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 Gene3D G3DSA:2.40.50.140 397 482 7.9E-18 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 Gene3D G3DSA:2.40.50.140 207 302 1.2E-26 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 Gene3D G3DSA:2.40.50.140 316 396 1.9E-24 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 Gene3D G3DSA:2.40.50.140 53 132 8.9E-9 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08510 efa48247d9877b5468aa40734370a03d 559 SUPERFAMILY SSF50249 121 207 3.13E-12 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 6 506 3.4E-227 T 19-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 Gene3D G3DSA:2.40.30.20 6 94 1.2E-27 T 19-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 504 46.856 T 19-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 373 5.5E-74 T 19-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 SUPERFAMILY SSF52540 97 379 1.72E-99 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 SUPERFAMILY SSF50615 11 94 3.66E-23 T 19-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 PANTHER PTHR15184:SF3 1 492 2.6E-280 T 19-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 PANTHER PTHR15184 1 492 2.6E-280 T 19-04-2016 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 93 1.1E-11 T 19-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 PIRSF PIRSF039088 2 507 1.2E-238 T 19-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 SUPERFAMILY SSF47917 382 507 1.7E-38 T 19-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 364 373 - T 19-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 Gene3D G3DSA:1.20.150.20 382 507 1.2E-42 T 19-04-2016 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 380 502 1.7E-39 T 19-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS09425 786afba0af49aaf23c4c0cab48190e95 507 Gene3D G3DSA:3.40.50.300 96 380 1.1E-115 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09555 86b4d24e193fb16c87cd94157aa3d8bc 259 PANTHER PTHR30188 4 256 1.6E-73 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMF_RS09555 86b4d24e193fb16c87cd94157aa3d8bc 259 PANTHER PTHR30188:SF4 4 256 1.6E-73 T 19-04-2016 AMF_RS09555 86b4d24e193fb16c87cd94157aa3d8bc 259 Pfam PF02405 Permease MlaE 48 256 7.7E-73 T 19-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 PANTHER PTHR23135 14 449 3.2E-147 T 19-04-2016 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 PANTHER PTHR23135:SF5 14 449 3.2E-147 T 19-04-2016 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 10 461 34.213 T 19-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 SUPERFAMILY SSF53244 312 455 6.56E-43 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 13 455 1.6E-128 T 19-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 Pfam PF01225 Mur ligase family, catalytic domain 13 107 2.1E-18 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 SUPERFAMILY SSF53623 97 310 1.49E-52 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 Gene3D G3DSA:3.90.190.20 315 458 3.6E-47 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 Gene3D G3DSA:3.40.1190.10 98 314 4.3E-60 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 Gene3D G3DSA:3.40.50.720 13 96 1.7E-29 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 Pfam PF08245 Mur ligase middle domain 115 293 7.2E-23 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 SUPERFAMILY SSF51984 13 93 7.46E-25 T 19-04-2016 AMF_RS05115 2ca9a4e18f4a76bdc177e794675d7d90 474 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 396 1.4E-18 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS09030 066668738856464d50064b79fdc9f211 487 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 471 5.7E-139 T 19-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMF_RS09030 066668738856464d50064b79fdc9f211 487 PANTHER PTHR22939 88 408 4.0E-113 T 19-04-2016 AMF_RS09030 066668738856464d50064b79fdc9f211 487 PANTHER PTHR22939 19 61 4.0E-113 T 19-04-2016 AMF_RS09030 066668738856464d50064b79fdc9f211 487 PANTHER PTHR22939:SF79 88 408 4.0E-113 T 19-04-2016 AMF_RS09030 066668738856464d50064b79fdc9f211 487 SMART SM00228 280 362 6.6E-16 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS09030 066668738856464d50064b79fdc9f211 487 SMART SM00228 390 471 5.4E-4 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS09030 066668738856464d50064b79fdc9f211 487 Gene3D G3DSA:2.40.10.10 35 59 3.7E-33 T 19-04-2016 AMF_RS09030 066668738856464d50064b79fdc9f211 487 Gene3D G3DSA:2.40.10.10 93 170 3.7E-33 T 19-04-2016 AMF_RS09030 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 136 156 4.4E-50 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_RS09030 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 233 250 4.4E-50 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_RS09030 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 115 127 4.4E-50 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_RS09030 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 177 201 4.4E-50 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_RS09030 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 320 332 4.4E-50 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_RS09030 066668738856464d50064b79fdc9f211 487 PRINTS PR00834 HtrA/DegQ protease family signature 211 228 4.4E-50 T 19-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMF_RS09030 066668738856464d50064b79fdc9f211 487 SUPERFAMILY SSF50494 103 289 1.96E-62 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMF_RS09030 066668738856464d50064b79fdc9f211 487 SUPERFAMILY SSF50494 6 59 1.96E-62 T 19-04-2016 IPR009003 Peptidase S1, PA clan AMF_RS09030 066668738856464d50064b79fdc9f211 487 Gene3D G3DSA:2.30.42.10 282 379 1.7E-30 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS09030 066668738856464d50064b79fdc9f211 487 Pfam PF13180 PDZ domain 280 370 1.4E-17 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS09030 066668738856464d50064b79fdc9f211 487 Pfam PF13180 PDZ domain 406 457 3.0E-6 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS09030 066668738856464d50064b79fdc9f211 487 SUPERFAMILY SSF50156 251 375 7.62E-26 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS09030 066668738856464d50064b79fdc9f211 487 Gene3D G3DSA:2.40.10.10 171 281 1.5E-40 T 19-04-2016 AMF_RS09030 066668738856464d50064b79fdc9f211 487 PANTHER PTHR22939:SF79 19 61 4.0E-113 T 19-04-2016 AMF_RS09030 066668738856464d50064b79fdc9f211 487 Gene3D G3DSA:2.30.42.10 393 457 1.3E-8 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS09030 066668738856464d50064b79fdc9f211 487 Pfam PF13365 Trypsin-like peptidase domain 106 240 1.0E-35 T 19-04-2016 AMF_RS09030 066668738856464d50064b79fdc9f211 487 SUPERFAMILY SSF50156 407 469 1.17E-7 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 Pfam PF00717 Peptidase S24-like 20 108 6.8E-21 T 19-04-2016 IPR019759 Peptidase S24/S26A/S26B AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 84 96 1.9E-21 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 157 176 1.9E-21 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 14 30 1.9E-21 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 3 200 2.7E-44 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 PANTHER PTHR12383 63 200 8.6E-61 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 ProSitePatterns PS00761 Signal peptidases I signature 3. 162 175 - T 19-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 Gene3D G3DSA:2.10.109.10 157 206 1.5E-43 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 Gene3D G3DSA:2.10.109.10 10 94 1.5E-43 T 19-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 ProSitePatterns PS00760 Signal peptidases I lysine active site. 86 98 - T 19-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 PANTHER PTHR12383 4 46 8.6E-61 T 19-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 PANTHER PTHR12383:SF27 4 46 8.6E-61 T 19-04-2016 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 PANTHER PTHR12383:SF27 63 200 8.6E-61 T 19-04-2016 AMF_RS07700 c7f49abe1ef91ea52016b48ac741ff47 221 SUPERFAMILY SSF51306 12 219 8.63E-60 T 19-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 SUPERFAMILY SSF56053 2 85 9.08E-13 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 Gene3D G3DSA:3.90.930.12 86 180 6.5E-32 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 Gene3D G3DSA:3.90.930.12 2 85 1.2E-15 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 PRINTS PR00059 Ribosomal protein L6 signature 102 118 5.4E-20 T 19-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 PRINTS PR00059 Ribosomal protein L6 signature 74 99 5.4E-20 T 19-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 PRINTS PR00059 Ribosomal protein L6 signature 144 165 5.4E-20 T 19-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 PIRSF PIRSF002162 1 181 1.4E-36 T 19-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 178 2.6E-58 T 19-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 Pfam PF00347 Ribosomal protein L6 94 165 3.3E-14 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 Pfam PF00347 Ribosomal protein L6 11 85 1.4E-5 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 PANTHER PTHR11655:SF14 2 181 3.1E-52 T 19-04-2016 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 PANTHER PTHR11655 2 181 3.1E-52 T 19-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08400 5150b6e99a273da41cf862c66a1d1e5d 181 SUPERFAMILY SSF56053 86 178 5.47E-30 T 19-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08390 b2699c485e7f6c7ada7130a6e3ba421b 174 SUPERFAMILY SSF54211 85 163 3.54E-22 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS08390 b2699c485e7f6c7ada7130a6e3ba421b 174 Gene3D G3DSA:3.30.160.20 14 78 1.2E-25 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMF_RS08390 b2699c485e7f6c7ada7130a6e3ba421b 174 PANTHER PTHR13718 23 167 8.9E-53 T 19-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 AMF_RS08390 b2699c485e7f6c7ada7130a6e3ba421b 174 Pfam PF00333 Ribosomal protein S5, N-terminal domain 17 79 9.3E-25 T 19-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMF_RS08390 b2699c485e7f6c7ada7130a6e3ba421b 174 Gene3D G3DSA:3.30.230.10 82 163 4.8E-27 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_RS08390 b2699c485e7f6c7ada7130a6e3ba421b 174 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 15 168 1.9E-57 T 19-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMF_RS08390 b2699c485e7f6c7ada7130a6e3ba421b 174 SUPERFAMILY SSF54768 14 81 1.99E-20 T 19-04-2016 AMF_RS08390 b2699c485e7f6c7ada7130a6e3ba421b 174 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 173 30.902 T 19-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMF_RS08390 b2699c485e7f6c7ada7130a6e3ba421b 174 Pfam PF03719 Ribosomal protein S5, C-terminal domain 93 163 1.9E-24 T 19-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 Pfam PF02082 Transcriptional regulator 1 81 1.8E-16 T 19-04-2016 IPR000944 Transcription regulator Rrf2-type AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 SUPERFAMILY SSF53383 150 509 5.19E-74 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 137 6.0E-26 T 19-04-2016 IPR000944 Transcription regulator Rrf2-type AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 Gene3D G3DSA:1.10.10.10 1 140 5.1E-23 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 PANTHER PTHR11601 151 501 5.9E-97 T 19-04-2016 AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 53 71 - T 19-04-2016 IPR030489 Transcription regulator Rrf2-type, conserved site AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 Gene3D G3DSA:3.40.640.10 177 384 1.2E-56 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 Gene3D G3DSA:3.90.1150.10 385 507 4.9E-29 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 Pfam PF00266 Aminotransferase class-V 151 501 4.8E-48 T 19-04-2016 IPR000192 Aminotransferase class V domain AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 SUPERFAMILY SSF46785 3 139 2.58E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMF_RS07525 34b68728494d3e82aa695ba852f812ac 520 PANTHER PTHR11601:SF20 151 501 5.9E-97 T 19-04-2016 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PANTHER PTHR12428 336 472 3.5E-63 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PANTHER PTHR12428 490 559 3.5E-63 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PANTHER PTHR12428:SF14 336 472 3.5E-63 T 19-04-2016 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PANTHER PTHR12428:SF14 490 559 3.5E-63 T 19-04-2016 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 Pfam PF02096 60Kd inner membrane protein 363 559 3.8E-53 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PRINTS PR00701 60kDa inner membrane protein signature 73 94 9.4E-15 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PRINTS PR00701 60kDa inner membrane protein signature 424 447 9.4E-15 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PRINTS PR00701 60kDa inner membrane protein signature 333 353 9.4E-15 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PRINTS PR00701 60kDa inner membrane protein signature 251 266 9.4E-15 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 362 559 2.0E-60 T 19-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 5 361 9.9E-81 T 19-04-2016 IPR028053 Membrane insertase YidC, N-terminal AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PRINTS PR01900 YidC translocation/secretion protein signature 494 509 1.8E-15 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PRINTS PR01900 YidC translocation/secretion protein signature 514 538 1.8E-15 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 PRINTS PR01900 YidC translocation/secretion protein signature 348 364 1.8E-15 T 19-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 561 18.847 T 19-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 AMF_RS06770 6356e31cad28d628ec527ff192a37e14 572 Pfam PF14849 YidC periplasmic domain 67 352 1.5E-70 T 19-04-2016 IPR028053 Membrane insertase YidC, N-terminal AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 SUPERFAMILY SSF46626 29 216 2.47E-64 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 Gene3D G3DSA:1.10.760.10 30 217 2.6E-76 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 PANTHER PTHR10266 33 253 5.3E-109 T 19-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 PANTHER PTHR10266:SF3 33 253 5.3E-109 T 19-04-2016 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 Pfam PF02167 Cytochrome C1 family 36 250 1.6E-92 T 19-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 132 156 2.5E-61 T 19-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 198 217 2.5E-61 T 19-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 178 197 2.5E-61 T 19-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 54 73 2.5E-61 T 19-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 217 232 2.5E-61 T 19-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 34 53 2.5E-61 T 19-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 AMF_RS07935 bb197faa2cd3545438983edcea9d20cc 253 PRINTS PR00603 Cytochrome C1 signature 99 119 2.5E-61 T 19-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 86 280 1.4E-57 T 19-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 4 492 43.568 T 19-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 Gene3D G3DSA:3.40.1450.10 78 292 8.6E-67 T 19-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 5 491 1.1E-176 T 19-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 Pfam PF01676 Metalloenzyme superfamily 5 479 5.7E-68 T 19-04-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 SUPERFAMILY SSF53649 292 491 6.15E-65 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 SUPERFAMILY SSF53649 6 77 6.15E-65 T 19-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 Gene3D G3DSA:3.40.720.10 6 77 1.7E-74 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 Gene3D G3DSA:3.40.720.10 296 491 1.7E-74 T 19-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 PANTHER PTHR31637:SF0 6 494 4.7E-208 T 19-04-2016 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 SUPERFAMILY SSF64158 77 291 2.22E-67 T 19-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 PIRSF PIRSF001492 1 494 3.3E-186 T 19-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMF_RS08005 1e899f895cc345c30e56675f846c7a21 494 PANTHER PTHR31637 6 494 4.7E-208 T 19-04-2016 AMF_RS09115 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 Hamap MF_00158 Pantothenate synthetase [panC]. 24 298 31.914 T 19-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 AMF_RS09115 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 Gene3D G3DSA:3.40.50.620 21 191 1.5E-61 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS09115 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 47 108 1.8E-8 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMF_RS09115 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 SUPERFAMILY SSF52374 19 298 1.34E-82 T 19-04-2016 AMF_RS09115 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 PANTHER PTHR21299 22 298 5.5E-87 T 19-04-2016 AMF_RS09115 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 23 298 2.2E-69 T 19-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 AMF_RS09115 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 Gene3D G3DSA:3.30.1300.10 199 298 2.0E-19 T 19-04-2016 AMF_RS09115 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 PANTHER PTHR21299:SF1 22 298 5.5E-87 T 19-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 AMF_RS09115 17b4c7eb15f9809b9d00e2e9cc8e7baf 299 Pfam PF02569 Pantoate-beta-alanine ligase 25 296 1.7E-77 T 19-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 AMF_RS08750 480f4764e4f38ef9cc35fc2f185de7b1 426 Gene3D G3DSA:3.30.2010.10 27 106 7.7E-13 T 19-04-2016 AMF_RS08750 480f4764e4f38ef9cc35fc2f185de7b1 426 SMART SM00028 292 325 0.0052 T 19-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 AMF_RS08750 480f4764e4f38ef9cc35fc2f185de7b1 426 SUPERFAMILY SSF55486 62 141 9.29E-10 T 19-04-2016 AMF_RS08750 480f4764e4f38ef9cc35fc2f185de7b1 426 PANTHER PTHR22726 22 313 4.5E-34 T 19-04-2016 AMF_RS08750 480f4764e4f38ef9cc35fc2f185de7b1 426 Gene3D G3DSA:1.25.40.10 267 374 7.7E-16 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS08750 480f4764e4f38ef9cc35fc2f185de7b1 426 Pfam PF01435 Peptidase family M48 33 219 3.9E-26 T 19-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMF_RS08750 480f4764e4f38ef9cc35fc2f185de7b1 426 PANTHER PTHR22726:SF10 22 313 4.5E-34 T 19-04-2016 AMF_RS08750 480f4764e4f38ef9cc35fc2f185de7b1 426 SUPERFAMILY SSF48452 264 376 2.47E-15 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS08170 a4837d9a1c00c000e3e0cb278bd83626 619 Pfam PF10150 Ribonuclease E/G family 188 458 2.8E-88 T 19-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AMF_RS08170 a4837d9a1c00c000e3e0cb278bd83626 619 PANTHER PTHR30001 1 538 7.0E-174 T 19-04-2016 AMF_RS08170 a4837d9a1c00c000e3e0cb278bd83626 619 PANTHER PTHR30001:SF1 1 538 7.0E-174 T 19-04-2016 AMF_RS08170 a4837d9a1c00c000e3e0cb278bd83626 619 SUPERFAMILY SSF50249 45 86 5.7E-16 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08170 a4837d9a1c00c000e3e0cb278bd83626 619 SUPERFAMILY SSF50249 147 189 5.7E-16 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08170 a4837d9a1c00c000e3e0cb278bd83626 619 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 19 490 1.4E-141 T 19-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AMF_RS08170 a4837d9a1c00c000e3e0cb278bd83626 619 Gene3D G3DSA:2.40.50.140 38 88 3.2E-29 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08170 a4837d9a1c00c000e3e0cb278bd83626 619 Gene3D G3DSA:2.40.50.140 149 191 3.2E-29 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05475 7873d99dfa6958b04d56e756bd412740 422 Pfam PF07690 Major Facilitator Superfamily 32 359 1.0E-27 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMF_RS05475 7873d99dfa6958b04d56e756bd412740 422 Gene3D G3DSA:1.20.1250.20 26 211 5.9E-20 T 19-04-2016 AMF_RS05475 7873d99dfa6958b04d56e756bd412740 422 PANTHER PTHR23512 25 415 1.7E-27 T 19-04-2016 AMF_RS05475 7873d99dfa6958b04d56e756bd412740 422 SUPERFAMILY SSF103473 20 415 6.15E-38 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMF_RS05475 7873d99dfa6958b04d56e756bd412740 422 PANTHER PTHR23512:SF1 25 415 1.7E-27 T 19-04-2016 AMF_RS06510 4a2f1e598ab11d81d1e202bb32ca887e 354 SUPERFAMILY SSF50331 253 352 6.46E-9 T 19-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal AMF_RS06510 4a2f1e598ab11d81d1e202bb32ca887e 354 Gene3D G3DSA:3.40.50.300 15 247 6.5E-67 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06510 4a2f1e598ab11d81d1e202bb32ca887e 354 SUPERFAMILY SSF52540 15 257 8.65E-71 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06510 4a2f1e598ab11d81d1e202bb32ca887e 354 PANTHER PTHR24220 16 257 1.1E-87 T 19-04-2016 AMF_RS06510 4a2f1e598ab11d81d1e202bb32ca887e 354 SMART SM00382 40 227 1.5E-17 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS06510 4a2f1e598ab11d81d1e202bb32ca887e 354 PANTHER PTHR24220:SF123 16 257 1.1E-87 T 19-04-2016 AMF_RS06510 4a2f1e598ab11d81d1e202bb32ca887e 354 Pfam PF00005 ABC transporter 39 177 1.1E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_RS06510 4a2f1e598ab11d81d1e202bb32ca887e 354 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_RS08690 b92ee32f0cc6fa4859e18f4045d245c2 195 PANTHER PTHR10520:SF10 1 175 3.3E-71 T 19-04-2016 AMF_RS08690 b92ee32f0cc6fa4859e18f4045d245c2 195 SUPERFAMILY SSF53328 2 181 1.31E-51 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_RS08690 b92ee32f0cc6fa4859e18f4045d245c2 195 PANTHER PTHR10520 1 175 3.3E-71 T 19-04-2016 AMF_RS08690 b92ee32f0cc6fa4859e18f4045d245c2 195 Gene3D G3DSA:3.40.50.170 2 177 3.1E-55 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_RS08690 b92ee32f0cc6fa4859e18f4045d245c2 195 Pfam PF00551 Formyl transferase 2 163 4.9E-45 T 19-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMF_RS08690 b92ee32f0cc6fa4859e18f4045d245c2 195 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 1 169 24.378 T 19-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 AMF_RS08690 b92ee32f0cc6fa4859e18f4045d245c2 195 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 167 1.1E-54 T 19-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 AMF_RS06775 15f0d731f67dd5453068acc25999996f 280 Pfam PF08009 CDP-alcohol phosphatidyltransferase 2 211 247 1.1E-8 T 19-04-2016 IPR012616 CDP-alcohol phosphatidyltransferase, C-terminal AMF_RS06775 15f0d731f67dd5453068acc25999996f 280 PANTHER PTHR15362:SF2 12 156 5.2E-32 T 19-04-2016 AMF_RS06775 15f0d731f67dd5453068acc25999996f 280 Pfam PF01066 CDP-alcohol phosphatidyltransferase 22 85 3.2E-14 T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMF_RS06775 15f0d731f67dd5453068acc25999996f 280 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 27 198 6.6E-34 T 19-04-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 AMF_RS06775 15f0d731f67dd5453068acc25999996f 280 PANTHER PTHR15362 12 156 5.2E-32 T 19-04-2016 AMF_RS06775 15f0d731f67dd5453068acc25999996f 280 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 63 85 - T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 SMART SM00400 44 98 3.0E-29 T 19-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 Pfam PF01807 CHC2 zinc finger 15 107 6.2E-32 T 19-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 Gene3D G3DSA:3.90.580.10 17 108 2.9E-32 T 19-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 Pfam PF13662 Toprim domain 254 321 1.4E-13 T 19-04-2016 IPR006171 Toprim domain AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 245 2.2E-32 T 19-04-2016 IPR013264 DNA primase, catalytic core, N-terminal AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 PANTHER PTHR30313 13 427 1.1E-96 T 19-04-2016 AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 SUPERFAMILY SSF56731 117 423 3.66E-85 T 19-04-2016 AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 Gene3D G3DSA:3.40.1360.10 235 359 8.1E-35 T 19-04-2016 AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 PIRSF PIRSF002811 10 607 1.6E-138 T 19-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 TIGRFAM TIGR01391 dnaG: DNA primase 17 416 4.4E-108 T 19-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 SUPERFAMILY SSF57783 16 107 5.27E-30 T 19-04-2016 AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 SMART SM00493 253 324 4.5E-8 T 19-04-2016 IPR006171 Toprim domain AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 Gene3D G3DSA:3.90.980.10 117 234 3.7E-29 T 19-04-2016 IPR013264 DNA primase, catalytic core, N-terminal AMF_RS06865 4a47347b9b6d2102c9d62253f88855cc 612 Hamap MF_00974 DNA primase [dnaG]. 11 607 23.115 T 19-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMF_RS06525 87fd4ce382ea9513aa1d6ea8bee3eeba 294 Gene3D G3DSA:3.40.50.1980 183 290 1.6E-15 T 19-04-2016 AMF_RS06525 87fd4ce382ea9513aa1d6ea8bee3eeba 294 Gene3D G3DSA:3.40.50.1980 27 182 2.1E-32 T 19-04-2016 AMF_RS06525 87fd4ce382ea9513aa1d6ea8bee3eeba 294 SUPERFAMILY SSF53807 27 290 1.28E-56 T 19-04-2016 AMF_RS06525 87fd4ce382ea9513aa1d6ea8bee3eeba 294 PANTHER PTHR30477:SF1 5 269 5.1E-38 T 19-04-2016 AMF_RS06525 87fd4ce382ea9513aa1d6ea8bee3eeba 294 Pfam PF01297 Zinc-uptake complex component A periplasmic 29 288 1.1E-46 T 19-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AMF_RS06525 87fd4ce382ea9513aa1d6ea8bee3eeba 294 PANTHER PTHR30477 5 269 5.1E-38 T 19-04-2016 AMF_RS05605 e8a56f36a3a2751da09d3c37c1db2cbe 185 PANTHER PTHR11241 1 185 1.1E-55 T 19-04-2016 AMF_RS05605 e8a56f36a3a2751da09d3c37c1db2cbe 185 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 13 182 5.9E-43 T 19-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 AMF_RS05605 e8a56f36a3a2751da09d3c37c1db2cbe 185 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 184 25.66 T 19-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 AMF_RS05605 e8a56f36a3a2751da09d3c37c1db2cbe 185 Gene3D G3DSA:2.70.40.10 4 182 1.3E-54 T 19-04-2016 IPR029054 dUTPase-like AMF_RS05605 e8a56f36a3a2751da09d3c37c1db2cbe 185 SUPERFAMILY SSF51283 4 182 2.36E-43 T 19-04-2016 IPR029054 dUTPase-like AMF_RS05605 e8a56f36a3a2751da09d3c37c1db2cbe 185 PANTHER PTHR11241:SF1 1 185 1.1E-55 T 19-04-2016 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 Gene3D G3DSA:3.90.190.20 325 458 8.1E-42 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 466 27.584 T 19-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 Gene3D G3DSA:3.40.1190.10 92 324 1.5E-60 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 Pfam PF02875 Mur ligase family, glutamate ligase domain 320 399 2.5E-19 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 14 466 3.9E-117 T 19-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 SUPERFAMILY SSF53623 89 311 6.75E-59 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 Pfam PF08245 Mur ligase middle domain 97 300 8.5E-46 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 Gene3D G3DSA:3.40.1390.10 14 56 1.8E-8 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 SUPERFAMILY SSF63418 14 87 6.54E-10 T 19-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 PANTHER PTHR23135:SF4 1 471 2.0E-117 T 19-04-2016 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 PANTHER PTHR23135 1 471 2.0E-117 T 19-04-2016 AMF_RS06095 15f38c240fbd35abeb5350715f6f23cb 472 SUPERFAMILY SSF53244 320 469 3.51E-37 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS08070 5efe3df36fda2d2c18b5cd5e107a8817 415 PANTHER PTHR30425 21 58 1.3E-70 T 19-04-2016 AMF_RS08070 5efe3df36fda2d2c18b5cd5e107a8817 415 PANTHER PTHR30425 162 414 1.3E-70 T 19-04-2016 AMF_RS08070 5efe3df36fda2d2c18b5cd5e107a8817 415 PANTHER PTHR30425:SF2 21 58 1.3E-70 T 19-04-2016 AMF_RS08070 5efe3df36fda2d2c18b5cd5e107a8817 415 PANTHER PTHR30425:SF2 162 414 1.3E-70 T 19-04-2016 AMF_RS08070 5efe3df36fda2d2c18b5cd5e107a8817 415 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 173 410 1.5E-59 T 19-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AMF_RS08070 5efe3df36fda2d2c18b5cd5e107a8817 415 Pfam PF11812 Domain of unknown function (DUF3333) 21 145 2.5E-11 T 19-04-2016 IPR024573 Domain of unknown function DUF3333 AMF_RS08070 5efe3df36fda2d2c18b5cd5e107a8817 415 SUPERFAMILY SSF161098 177 399 3.14E-30 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS08070 5efe3df36fda2d2c18b5cd5e107a8817 415 Gene3D G3DSA:1.10.3720.10 179 411 1.7E-38 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS08070 5efe3df36fda2d2c18b5cd5e107a8817 415 Gene3D G3DSA:1.10.3720.10 27 53 1.7E-38 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS08070 5efe3df36fda2d2c18b5cd5e107a8817 415 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 212 410 4.7E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 SUPERFAMILY SSF55261 298 425 4.41E-34 T 19-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 5 590 1.4E-181 T 19-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 Gene3D G3DSA:3.30.930.10 419 588 1.6E-98 T 19-04-2016 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 Gene3D G3DSA:3.30.930.10 139 285 1.6E-98 T 19-04-2016 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 Pfam PF02938 GAD domain 317 409 9.4E-16 T 19-04-2016 IPR029351 GAD domain AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 PANTHER PTHR22594:SF5 3 306 1.0E-201 T 19-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 PANTHER PTHR22594:SF5 375 575 1.0E-201 T 19-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 Pfam PF01336 OB-fold nucleic acid binding domain 21 105 1.8E-10 T 19-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 4 567 32.639 T 19-04-2016 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 Pfam PF00152 tRNA synthetases class II (D, K and N) 124 561 1.4E-92 T 19-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 Gene3D G3DSA:2.40.50.140 4 110 9.4E-33 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 PANTHER PTHR22594 3 306 1.0E-201 T 19-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 PANTHER PTHR22594 375 575 1.0E-201 T 19-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 478 494 1.9E-22 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 522 536 1.9E-22 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 208 1.9E-22 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 213 226 1.9E-22 T 19-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 Gene3D G3DSA:3.30.1360.30 286 418 8.0E-40 T 19-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 SUPERFAMILY SSF55681 412 561 1.79E-93 T 19-04-2016 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 SUPERFAMILY SSF55681 124 320 1.79E-93 T 19-04-2016 AMF_RS05805 2012e0e1be5d92691f924c4669649ac9 592 SUPERFAMILY SSF50249 4 109 1.85E-29 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 PANTHER PTHR10986:SF12 2 113 8.5E-56 T 19-04-2016 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 SUPERFAMILY SSF74731 3 113 4.58E-47 T 19-04-2016 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 28.074 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 Gene3D G3DSA:1.10.1900.20 55 113 3.5E-28 T 19-04-2016 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 PANTHER PTHR10986 2 113 8.5E-56 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 PRINTS PR00062 Ribosomal protein L20 signature 12 41 7.6E-35 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 PRINTS PR00062 Ribosomal protein L20 signature 42 71 7.6E-35 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 PRINTS PR00062 Ribosomal protein L20 signature 75 101 7.6E-35 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 71 1.0E-12 T 19-04-2016 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 Pfam PF00453 Ribosomal protein L20 3 108 1.5E-46 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMF_RS05270 afa9297aaa04d58915b02059b48cefa8 128 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 113 1.7E-45 T 19-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 AMF_RS09090 eb0978c3603b27441afd7cf7c2e4ff36 80 PANTHER PTHR10168 4 79 9.3E-31 T 19-04-2016 AMF_RS09090 eb0978c3603b27441afd7cf7c2e4ff36 80 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 79 3.6E-32 T 19-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 AMF_RS09090 eb0978c3603b27441afd7cf7c2e4ff36 80 ProSitePatterns PS00195 Glutaredoxin active site. 6 21 - T 19-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 AMF_RS09090 eb0978c3603b27441afd7cf7c2e4ff36 80 Pfam PF00462 Glutaredoxin 4 63 5.8E-23 T 19-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMF_RS09090 eb0978c3603b27441afd7cf7c2e4ff36 80 Gene3D G3DSA:3.40.30.10 2 79 9.0E-32 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS09090 eb0978c3603b27441afd7cf7c2e4ff36 80 PRINTS PR00160 Glutaredoxin signature 60 73 7.1E-18 T 19-04-2016 IPR014025 Glutaredoxin subgroup AMF_RS09090 eb0978c3603b27441afd7cf7c2e4ff36 80 PRINTS PR00160 Glutaredoxin signature 46 59 7.1E-18 T 19-04-2016 IPR014025 Glutaredoxin subgroup AMF_RS09090 eb0978c3603b27441afd7cf7c2e4ff36 80 PRINTS PR00160 Glutaredoxin signature 4 22 7.1E-18 T 19-04-2016 IPR014025 Glutaredoxin subgroup AMF_RS09090 eb0978c3603b27441afd7cf7c2e4ff36 80 SUPERFAMILY SSF52833 2 79 6.6E-30 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS07205 f70e85c0a9606b37d73a5a8ba1fb8929 145 SUPERFAMILY SSF89623 5 143 1.83E-46 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMF_RS07205 f70e85c0a9606b37d73a5a8ba1fb8929 145 Gene3D G3DSA:3.40.1400.10 5 142 4.4E-51 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMF_RS07205 f70e85c0a9606b37d73a5a8ba1fb8929 145 PANTHER PTHR30345 5 142 6.0E-50 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMF_RS07205 f70e85c0a9606b37d73a5a8ba1fb8929 145 PIRSF PIRSF005384 4 144 3.1E-47 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMF_RS07205 f70e85c0a9606b37d73a5a8ba1fb8929 145 Pfam PF02502 Ribose/Galactose Isomerase 6 142 2.2E-44 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMF_RS07205 f70e85c0a9606b37d73a5a8ba1fb8929 145 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 6 142 1.6E-46 T 19-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 PANTHER PTHR22773 2 552 5.3E-213 T 19-04-2016 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 Pfam PF00361 Proton-conducting membrane transporter 107 401 2.9E-81 T 19-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 8 598 6.6E-206 T 19-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 56 81 5.5E-61 T 19-04-2016 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 297 309 5.5E-61 T 19-04-2016 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 398 417 5.5E-61 T 19-04-2016 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 131 152 5.5E-61 T 19-04-2016 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 229 255 5.5E-61 T 19-04-2016 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 104 5.5E-61 T 19-04-2016 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 207 228 5.5E-61 T 19-04-2016 AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 39 95 2.4E-22 T 19-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal AMF_RS07810 66746362a8a4f31932111f64f3291edf 606 PANTHER PTHR22773:SF50 2 552 5.3E-213 T 19-04-2016 AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 Gene3D G3DSA:3.90.45.10 5 184 3.0E-56 T 19-04-2016 IPR023635 Peptide deformylase AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 Pfam PF01327 Polypeptide deformylase 5 172 2.3E-47 T 19-04-2016 IPR023635 Peptide deformylase AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 178 3.0E-43 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 PRINTS PR01576 Peptide deformylase signature 121 139 1.4E-33 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 PRINTS PR01576 Peptide deformylase signature 109 120 1.4E-33 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 PRINTS PR01576 Peptide deformylase signature 140 169 1.4E-33 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 PRINTS PR01576 Peptide deformylase signature 35 64 1.4E-33 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 PANTHER PTHR10458 1 185 2.4E-56 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 PIRSF PIRSF004749 1 185 1.2E-48 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 SUPERFAMILY SSF56420 2 183 6.8E-54 T 19-04-2016 IPR023635 Peptide deformylase AMF_RS09650 cb7b9aae27944f936285efff6fb08596 185 Hamap MF_00163 Peptide deformylase [def]. 2 182 28.105 T 19-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PANTHER PTHR30386:SF3 401 498 6.8E-102 T 19-04-2016 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PANTHER PTHR30386:SF3 64 157 6.8E-102 T 19-04-2016 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PANTHER PTHR30386:SF3 194 385 6.8E-102 T 19-04-2016 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 114 134 1.5E-33 T 19-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 462 477 1.5E-33 T 19-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 347 368 1.5E-33 T 19-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 477 497 1.5E-33 T 19-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 72 95 1.5E-33 T 19-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 Pfam PF13437 HlyD family secretion protein 334 411 7.1E-8 T 19-04-2016 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 65 498 2.8E-115 T 19-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 Gene3D G3DSA:2.40.50.100 106 136 8.0E-13 T 19-04-2016 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 Gene3D G3DSA:2.40.50.100 332 366 8.0E-13 T 19-04-2016 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PANTHER PTHR30386 401 498 6.8E-102 T 19-04-2016 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PANTHER PTHR30386 64 157 6.8E-102 T 19-04-2016 AMF_RS05935 9c1cdca42df86585a13d44667d4424b7 498 PANTHER PTHR30386 194 385 6.8E-102 T 19-04-2016 AMF_RS08250 d1bbdbc918521c150020da0606c377cd 377 Pfam PF01266 FAD dependent oxidoreductase 7 334 2.3E-30 T 19-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMF_RS08250 d1bbdbc918521c150020da0606c377cd 377 Gene3D G3DSA:3.50.50.60 143 173 9.1E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS08250 d1bbdbc918521c150020da0606c377cd 377 Gene3D G3DSA:3.50.50.60 5 92 9.1E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS08250 d1bbdbc918521c150020da0606c377cd 377 SUPERFAMILY SSF51971 7 223 8.0E-22 T 19-04-2016 AMF_RS08250 d1bbdbc918521c150020da0606c377cd 377 SUPERFAMILY SSF51971 286 338 8.0E-22 T 19-04-2016 AMF_RS08250 d1bbdbc918521c150020da0606c377cd 377 SUPERFAMILY SSF54373 210 299 2.09E-15 T 19-04-2016 AMF_RS08250 d1bbdbc918521c150020da0606c377cd 377 Gene3D G3DSA:3.30.9.10 174 299 6.9E-16 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82866 792 1027 7.85E-36 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82693 136 180 1.92E-12 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82693 266 322 1.92E-12 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:3.30.2090.10 184 263 6.0E-6 T 19-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:3.30.70.1430 42 131 9.5E-17 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 382 406 3.6E-27 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 435 458 3.6E-27 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 3.6E-27 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 460 483 3.6E-27 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 3.6E-27 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 3.6E-27 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82714 185 264 1.96E-6 T 19-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82866 288 488 8.76E-38 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 SUPERFAMILY SSF82693 42 129 2.54E-16 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:1.10.3850.10 799 1026 1.5E-40 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 PANTHER PTHR32063 2 1026 2.7E-196 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 Gene3D G3DSA:1.20.1640.10 283 495 4.7E-45 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 PANTHER PTHR32063:SF31 2 1026 2.7E-196 T 19-04-2016 AMF_RS07775 5443cab7102da7ef037519c6130d351a 1037 Pfam PF00873 AcrB/AcrD/AcrF family 4 1022 7.6E-148 T 19-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AMF_RS09630 48b52f34210c3244b994593f01c79fd2 282 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 16 271 17.381 T 19-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 AMF_RS09630 48b52f34210c3244b994593f01c79fd2 282 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 10 271 6.8E-63 T 19-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 AMF_RS09630 48b52f34210c3244b994593f01c79fd2 282 PANTHER PTHR30589:SF0 8 275 2.3E-76 T 19-04-2016 AMF_RS09630 48b52f34210c3244b994593f01c79fd2 282 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 19 265 5.4E-65 T 19-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 AMF_RS09630 48b52f34210c3244b994593f01c79fd2 282 PANTHER PTHR30589 8 275 2.3E-76 T 19-04-2016 AMF_RS09910 75cf89ca5398b89221dc11df1ffcbcc2 256 SUPERFAMILY SSF53335 11 190 1.84E-30 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS09910 75cf89ca5398b89221dc11df1ffcbcc2 256 Gene3D G3DSA:3.40.50.150 11 190 2.1E-31 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS09910 75cf89ca5398b89221dc11df1ffcbcc2 256 PANTHER PTHR10108 15 130 2.7E-19 T 19-04-2016 AMF_RS09910 75cf89ca5398b89221dc11df1ffcbcc2 256 Pfam PF08241 Methyltransferase domain 49 135 4.3E-18 T 19-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 PANTHER PTHR11390 1 672 0.0 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 287 309 - T 19-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Pfam PF01131 DNA topoisomerase 132 553 1.0E-128 T 19-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Pfam PF01751 Toprim domain 3 117 6.7E-25 T 19-04-2016 IPR006171 Toprim domain AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Gene3D G3DSA:3.30.65.10 594 634 2.1E-6 T 19-04-2016 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 719 52.416 T 19-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 PANTHER PTHR11390:SF27 1 672 0.0 T 19-04-2016 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 SUPERFAMILY SSF57783 595 634 2.04E-6 T 19-04-2016 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 SMART SM00437 250 516 1.4E-116 T 19-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Gene3D G3DSA:1.10.460.10 137 189 9.0E-57 T 19-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Gene3D G3DSA:1.10.460.10 456 567 9.0E-57 T 19-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Gene3D G3DSA:3.40.50.140 3 136 3.1E-39 T 19-04-2016 IPR006171 Toprim domain AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 598 631 3.7E-11 T 19-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 SMART SM00493 1 102 1.3E-25 T 19-04-2016 IPR006171 Toprim domain AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 SUPERFAMILY SSF56712 2 567 3.4E-188 T 19-04-2016 IPR023405 DNA topoisomerase, type IA, core domain AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 SUPERFAMILY SSF56712 598 607 3.4E-188 T 19-04-2016 IPR023405 DNA topoisomerase, type IA, core domain AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Pfam PF13368 Topoisomerase C-terminal repeat 653 701 5.0E-6 T 19-04-2016 IPR025589 Topoisomerase C-terminal repeat AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Pfam PF13368 Topoisomerase C-terminal repeat 708 759 9.8E-12 T 19-04-2016 IPR025589 Topoisomerase C-terminal repeat AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Pfam PF13368 Topoisomerase C-terminal repeat 767 812 6.9E-11 T 19-04-2016 IPR025589 Topoisomerase C-terminal repeat AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 4 632 8.7E-244 T 19-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 300 309 3.8E-35 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 76 89 3.8E-35 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 378 394 3.8E-35 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 166 184 3.8E-35 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 479 493 3.8E-35 T 19-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 SMART SM00436 108 196 4.0E-45 T 19-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Gene3D G3DSA:2.70.20.10 326 455 4.2E-36 T 19-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMF_RS06920 7cbd4c5cf52da6ea305837797dff3429 812 Gene3D G3DSA:2.70.20.10 190 319 1.6E-31 T 19-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMF_RS06495 f790db7d3b4cdf1212a885a3795d9455 242 SUPERFAMILY SSF55681 2 193 1.99E-45 T 19-04-2016 AMF_RS06495 f790db7d3b4cdf1212a885a3795d9455 242 Gene3D G3DSA:3.30.930.10 3 192 8.7E-49 T 19-04-2016 AMF_RS06495 f790db7d3b4cdf1212a885a3795d9455 242 Gene3D G3DSA:2.30.30.100 198 241 6.0E-6 T 19-04-2016 AMF_RS06495 f790db7d3b4cdf1212a885a3795d9455 242 PANTHER PTHR12835 3 241 1.6E-44 T 19-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 AMF_RS06495 f790db7d3b4cdf1212a885a3795d9455 242 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 6 233 4.3E-47 T 19-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 AMF_RS06495 f790db7d3b4cdf1212a885a3795d9455 242 Pfam PF03099 Biotin/lipoate A/B protein ligase family 17 138 2.4E-18 T 19-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 SUPERFAMILY SSF53067 184 377 2.59E-63 T 19-04-2016 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 Gene3D G3DSA:3.30.420.40 6 54 4.4E-66 T 19-04-2016 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 Gene3D G3DSA:3.30.420.40 116 193 4.4E-66 T 19-04-2016 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 9 16 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PRINTS PR00301 70kDa heat shock protein signature 464 480 9.8E-79 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PRINTS PR00301 70kDa heat shock protein signature 5 18 9.8E-79 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PRINTS PR00301 70kDa heat shock protein signature 135 155 9.8E-79 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PRINTS PR00301 70kDa heat shock protein signature 328 344 9.8E-79 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PRINTS PR00301 70kDa heat shock protein signature 33 45 9.8E-79 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PRINTS PR00301 70kDa heat shock protein signature 360 380 9.8E-79 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PRINTS PR00301 70kDa heat shock protein signature 383 402 9.8E-79 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PRINTS PR00301 70kDa heat shock protein signature 55 63 9.8E-79 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PRINTS PR00301 70kDa heat shock protein signature 195 205 9.8E-79 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 189 202 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PANTHER PTHR19375:SF173 3 640 0.0 T 19-04-2016 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 Gene3D G3DSA:2.60.34.10 385 527 6.3E-72 T 19-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 Pfam PF00012 Hsp70 protein 6 600 5.5E-261 T 19-04-2016 IPR013126 Heat shock protein 70 family AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 19-04-2016 IPR018181 Heat shock protein 70, conserved site AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 Gene3D G3DSA:3.90.640.10 223 308 3.1E-28 T 19-04-2016 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 PANTHER PTHR19375 3 640 0.0 T 19-04-2016 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 SUPERFAMILY SSF100934 502 601 4.9E-16 T 19-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 5 600 8.6E-281 T 19-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 Gene3D G3DSA:3.30.420.40 312 355 1.4E-33 T 19-04-2016 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 Gene3D G3DSA:3.30.420.40 194 222 1.4E-33 T 19-04-2016 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 3 633 36.282 T 19-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 Gene3D G3DSA:1.20.1270.10 528 600 1.5E-25 T 19-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 SUPERFAMILY SSF53067 6 181 3.11E-60 T 19-04-2016 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 Gene3D G3DSA:3.30.30.30 55 104 1.2E-18 T 19-04-2016 AMF_RS08165 d4489d4a024fbdcd4e99a70dece2be08 641 SUPERFAMILY SSF100920 379 535 1.01E-62 T 19-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain AMF_RS05510 bd8b73d6d7e10b09eef919ea6474ce3d 205 Pfam PF00677 Lumazine binding domain 3 86 2.1E-18 T 19-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS05510 bd8b73d6d7e10b09eef919ea6474ce3d 205 Pfam PF00677 Lumazine binding domain 101 185 1.2E-20 T 19-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS05510 bd8b73d6d7e10b09eef919ea6474ce3d 205 PANTHER PTHR21098 1 203 1.8E-65 T 19-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS05510 bd8b73d6d7e10b09eef919ea6474ce3d 205 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 200 4.9E-55 T 19-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS05510 bd8b73d6d7e10b09eef919ea6474ce3d 205 Gene3D G3DSA:2.40.30.20 106 196 4.0E-27 T 19-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS05510 bd8b73d6d7e10b09eef919ea6474ce3d 205 Gene3D G3DSA:2.40.30.20 5 105 2.4E-25 T 19-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS05510 bd8b73d6d7e10b09eef919ea6474ce3d 205 SUPERFAMILY SSF63380 1 92 4.08E-20 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMF_RS05510 bd8b73d6d7e10b09eef919ea6474ce3d 205 SUPERFAMILY SSF63380 95 198 2.13E-31 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMF_RS05510 bd8b73d6d7e10b09eef919ea6474ce3d 205 PIRSF PIRSF000498 1 205 7.3E-63 T 19-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.10.20.30 5 63 4.0E-5 T 19-04-2016 IPR012675 Beta-grasp domain AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 68 635 32.459 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 SUPERFAMILY SSF55186 66 242 1.19E-60 T 19-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 320 530 3.6E-44 T 19-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PANTHER PTHR11451:SF31 1 636 7.9E-299 T 19-04-2016 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 171 220 8.7E-14 T 19-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 SUPERFAMILY SSF52954 528 632 2.27E-20 T 19-04-2016 IPR004154 Anticodon-binding AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.30.930.10 243 531 3.6E-118 T 19-04-2016 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Pfam PF03129 Anticodon binding domain 545 629 8.6E-12 T 19-04-2016 IPR004154 Anticodon-binding AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.30.54.20 133 187 2.8E-23 T 19-04-2016 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PANTHER PTHR11451 1 636 7.9E-299 T 19-04-2016 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.30.980.10 69 131 3.3E-39 T 19-04-2016 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.30.980.10 189 224 3.3E-39 T 19-04-2016 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 SUPERFAMILY SSF81271 5 63 2.75E-5 T 19-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 SUPERFAMILY SSF55681 244 527 1.44E-98 T 19-04-2016 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 Gene3D G3DSA:3.40.50.800 533 629 7.6E-19 T 19-04-2016 IPR004154 Anticodon-binding AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 SMART SM00863 171 220 9.3E-23 T 19-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 74 628 1.2E-210 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PRINTS PR01047 Threonyl-tRNA synthetase signature 535 547 5.7E-53 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PRINTS PR01047 Threonyl-tRNA synthetase signature 465 493 5.7E-53 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PRINTS PR01047 Threonyl-tRNA synthetase signature 508 521 5.7E-53 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PRINTS PR01047 Threonyl-tRNA synthetase signature 363 386 5.7E-53 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_RS09775 b39fcc37cefb1dc51feae7e0aeaa9d94 636 PRINTS PR01047 Threonyl-tRNA synthetase signature 330 358 5.7E-53 T 19-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 SUPERFAMILY SSF56059 2 236 9.56E-69 T 19-04-2016 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 Gene3D G3DSA:3.30.1490.20 22 95 7.9E-29 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 385 37.951 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 Gene3D G3DSA:3.30.470.20 96 237 1.2E-48 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 Gene3D G3DSA:3.40.50.261 242 383 1.2E-61 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 Pfam PF00549 CoA-ligase 262 378 4.3E-19 T 19-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 PIRSF PIRSF001554 1 387 5.4E-138 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 SUPERFAMILY SSF52210 242 385 2.22E-50 T 19-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 19-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 Pfam PF08442 ATP-grasp domain 2 202 3.9E-68 T 19-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 2 384 1.2E-147 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMF_RS05900 fded509d6b1320b99750a744e48e3395 388 PANTHER PTHR11815 2 388 2.4E-193 T 19-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PANTHER PTHR23115:SF112 5 391 1.1E-217 T 19-04-2016 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Gene3D G3DSA:2.40.30.10 209 296 3.3E-34 T 19-04-2016 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 92 103 3.6E-22 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 129 138 3.6E-22 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 56 64 3.6E-22 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 76 86 3.6E-22 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 10 23 3.6E-22 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 49 64 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 393 56.518 T 19-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Pfam PF00009 Elongation factor Tu GTP binding domain 6 177 6.1E-56 T 19-04-2016 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Gene3D G3DSA:3.40.50.300 4 208 8.4E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Pfam PF03144 Elongation factor Tu domain 2 224 292 1.3E-17 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Gene3D G3DSA:2.40.30.10 301 392 3.6E-42 T 19-04-2016 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 SUPERFAMILY SSF50465 302 393 7.44E-34 T 19-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 5 393 1.3E-200 T 19-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Pfam PF03143 Elongation factor Tu C-terminal domain 298 391 4.0E-30 T 19-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 SUPERFAMILY SSF50447 204 298 9.03E-29 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 144 8.7E-13 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 SUPERFAMILY SSF52540 5 225 2.68E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08485 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PANTHER PTHR23115 5 391 1.1E-217 T 19-04-2016 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PANTHER PTHR23115:SF112 5 391 1.1E-217 T 19-04-2016 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Gene3D G3DSA:2.40.30.10 209 296 3.3E-34 T 19-04-2016 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 92 103 3.6E-22 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 129 138 3.6E-22 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 56 64 3.6E-22 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 76 86 3.6E-22 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PRINTS PR00315 GTP-binding elongation factor signature 10 23 3.6E-22 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 49 64 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 393 56.518 T 19-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Pfam PF00009 Elongation factor Tu GTP binding domain 6 177 6.1E-56 T 19-04-2016 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Gene3D G3DSA:3.40.50.300 4 208 8.4E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Pfam PF03144 Elongation factor Tu domain 2 224 292 1.3E-17 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Gene3D G3DSA:2.40.30.10 301 392 3.6E-42 T 19-04-2016 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 SUPERFAMILY SSF50465 302 393 7.44E-34 T 19-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 5 393 1.3E-200 T 19-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 Pfam PF03143 Elongation factor Tu C-terminal domain 298 391 4.0E-30 T 19-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 SUPERFAMILY SSF50447 204 298 9.03E-29 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 144 8.7E-13 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 SUPERFAMILY SSF52540 5 225 2.68E-56 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05985 f53f2c33e68cd0ed4705fb3d33b1a0e4 393 PANTHER PTHR23115 5 391 1.1E-217 T 19-04-2016 AMF_RS08255 8b74684b6b9b53a1fc1050d156bcd984 486 Pfam PF00772 DnaB-like helicase N terminal domain 16 115 1.4E-20 T 19-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AMF_RS08255 8b74684b6b9b53a1fc1050d156bcd984 486 Gene3D G3DSA:3.40.50.300 181 471 9.5E-84 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08255 8b74684b6b9b53a1fc1050d156bcd984 486 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 17 472 1.4E-137 T 19-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AMF_RS08255 8b74684b6b9b53a1fc1050d156bcd984 486 Gene3D G3DSA:1.10.860.10 16 116 8.0E-18 T 19-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AMF_RS08255 8b74684b6b9b53a1fc1050d156bcd984 486 SUPERFAMILY SSF52540 193 464 1.77E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08255 8b74684b6b9b53a1fc1050d156bcd984 486 Pfam PF03796 DnaB-like helicase C terminal domain 194 470 1.6E-95 T 19-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 AMF_RS08255 8b74684b6b9b53a1fc1050d156bcd984 486 PANTHER PTHR30153 1 415 4.3E-143 T 19-04-2016 AMF_RS08255 8b74684b6b9b53a1fc1050d156bcd984 486 PANTHER PTHR30153 432 480 4.3E-143 T 19-04-2016 AMF_RS08255 8b74684b6b9b53a1fc1050d156bcd984 486 SUPERFAMILY SSF48024 16 125 1.57E-24 T 19-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 SUPERFAMILY SSF53448 1 240 4.28E-40 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 Gene3D G3DSA:3.90.550.10 1 232 7.0E-41 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 PANTHER PTHR22572:SF115 2 424 2.5E-110 T 19-04-2016 AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 293 326 4.2E-6 T 19-04-2016 IPR001451 Hexapeptide repeat AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 Gene3D G3DSA:2.160.10.10 240 308 1.2E-10 T 19-04-2016 AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 372 404 5.8E-11 T 19-04-2016 IPR001451 Hexapeptide repeat AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 PANTHER PTHR22572 2 424 2.5E-110 T 19-04-2016 AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 Gene3D G3DSA:2.160.10.10 309 416 3.7E-33 T 19-04-2016 AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 378 406 - T 19-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 1 427 29.787 T 19-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 Pfam PF12804 MobA-like NTP transferase domain 4 136 7.5E-18 T 19-04-2016 IPR025877 MobA-like NTP transferase AMF_RS05255 6467ad90b151b98b64cf3d700fb910c3 428 SUPERFAMILY SSF51161 243 411 4.51E-44 T 19-04-2016 IPR011004 Trimeric LpxA-like AMF_RS08175 658228c78aafb79b0d180811635a6e41 92 PANTHER PTHR34583 1 85 1.5E-21 T 19-04-2016 AMF_RS08175 658228c78aafb79b0d180811635a6e41 92 PANTHER PTHR34583:SF2 1 85 1.5E-21 T 19-04-2016 AMF_RS08175 658228c78aafb79b0d180811635a6e41 92 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 2 88 7.1E-18 T 19-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 302 6.3E-91 T 19-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 3 464 30.05 T 19-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 Gene3D G3DSA:3.90.800.10 68 179 3.7E-31 T 19-04-2016 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 PANTHER PTHR11451:SF41 2 333 3.0E-88 T 19-04-2016 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 464 1.5E-141 T 19-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 PANTHER PTHR11451 355 387 3.0E-88 T 19-04-2016 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 PANTHER PTHR11451 2 333 3.0E-88 T 19-04-2016 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 Gene3D G3DSA:1.10.1160.10 232 312 1.0E-27 T 19-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 PANTHER PTHR11451:SF41 355 387 3.0E-88 T 19-04-2016 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 Gene3D G3DSA:3.40.50.620 180 229 9.6E-50 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 Gene3D G3DSA:3.40.50.620 3 67 9.6E-50 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 SUPERFAMILY SSF52374 3 294 2.12E-101 T 19-04-2016 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 PRINTS PR00987 Glutamyl-tRNA synthetase signature 178 188 3.7E-26 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 PRINTS PR00987 Glutamyl-tRNA synthetase signature 194 202 3.7E-26 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 3.7E-26 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 3.7E-26 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 3.7E-26 T 19-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 SUPERFAMILY SSF48163 298 464 1.16E-29 T 19-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS07905 c4131ef8598c296c84ad6882393ba787 466 Gene3D G3DSA:1.10.10.350 371 461 1.4E-17 T 19-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 SMART SM00662 45 259 1.4E-56 T 19-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 Gene3D G3DSA:3.30.1360.10 44 73 4.1E-27 T 19-04-2016 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 Gene3D G3DSA:3.30.1360.10 202 256 4.1E-27 T 19-04-2016 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 SUPERFAMILY SSF55257 204 256 6.08E-26 T 19-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 SUPERFAMILY SSF55257 29 75 6.08E-26 T 19-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 281 338 6.1E-25 T 19-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 51 253 1.5E-20 T 19-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 Gene3D G3DSA:1.10.150.20 279 358 3.7E-36 T 19-04-2016 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 Gene3D G3DSA:2.170.120.12 75 181 4.3E-30 T 19-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 46 346 1.7E-94 T 19-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 PANTHER PTHR32108:SF0 46 360 3.7E-111 T 19-04-2016 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 SUPERFAMILY SSF56553 75 203 3.92E-30 T 19-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 PANTHER PTHR32108 46 360 3.7E-111 T 19-04-2016 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 287 356 1.0E-35 T 19-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 25 347 33.21 T 19-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 84 177 3.9E-15 T 19-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 AMF_RS08360 815c4f1a68f3a3aacefadaa241f2889f 366 SUPERFAMILY SSF47789 281 356 6.8E-27 T 19-04-2016 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 Gene3D G3DSA:1.10.730.10 345 508 4.6E-42 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 509 42.355 T 19-04-2016 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 PANTHER PTHR11946 7 508 2.9E-196 T 19-04-2016 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 PANTHER PTHR11946:SF1 7 508 2.9E-196 T 19-04-2016 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 SUPERFAMILY SSF52374 4 351 1.26E-98 T 19-04-2016 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 6 61 2.2E-8 T 19-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 SUPERFAMILY SSF47323 354 508 8.97E-35 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 Pfam PF09334 tRNA synthetases class I (M) 148 365 6.1E-61 T 19-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 PRINTS PR01041 Methionyl-tRNA synthetase signature 261 276 4.3E-30 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 PRINTS PR01041 Methionyl-tRNA synthetase signature 41 55 4.3E-30 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 PRINTS PR01041 Methionyl-tRNA synthetase signature 225 236 4.3E-30 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 PRINTS PR01041 Methionyl-tRNA synthetase signature 9 22 4.3E-30 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 PRINTS PR01041 Methionyl-tRNA synthetase signature 89 100 4.3E-30 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 PRINTS PR01041 Methionyl-tRNA synthetase signature 353 364 4.3E-30 T 19-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 Gene3D G3DSA:2.170.220.10 118 226 9.7E-39 T 19-04-2016 AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 Gene3D G3DSA:3.40.50.620 227 341 2.4E-65 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS08820 3480f19a2e7d2811e300c8d20323aca4 515 Gene3D G3DSA:3.40.50.620 5 115 2.4E-65 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS08635 f690f062e6339eef0ff59fb8aff96219 214 PIRSF PIRSF016262 8 214 5.3E-55 T 19-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMF_RS08635 f690f062e6339eef0ff59fb8aff96219 214 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 37 192 1.1E-43 T 19-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMF_RS08635 f690f062e6339eef0ff59fb8aff96219 214 Gene3D G3DSA:3.90.1550.10 9 212 1.3E-63 T 19-04-2016 AMF_RS08635 f690f062e6339eef0ff59fb8aff96219 214 Hamap MF_00013 Octanoyltransferase [lipB]. 8 214 31.459 T 19-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMF_RS08635 f690f062e6339eef0ff59fb8aff96219 214 PANTHER PTHR10993:SF10 7 212 6.0E-60 T 19-04-2016 AMF_RS08635 f690f062e6339eef0ff59fb8aff96219 214 Pfam PF03099 Biotin/lipoate A/B protein ligase family 66 168 3.0E-8 T 19-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 AMF_RS08635 f690f062e6339eef0ff59fb8aff96219 214 SUPERFAMILY SSF55681 13 211 1.57E-57 T 19-04-2016 AMF_RS08635 f690f062e6339eef0ff59fb8aff96219 214 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 81 133 1.0E-24 T 19-04-2016 AMF_RS08635 f690f062e6339eef0ff59fb8aff96219 214 PANTHER PTHR10993 7 212 6.0E-60 T 19-04-2016 AMF_RS05145 a62d24f37f0729e614dd02f83811bbdb 312 Gene3D G3DSA:1.10.443.10 110 300 5.5E-42 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMF_RS05145 a62d24f37f0729e614dd02f83811bbdb 312 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 307 25.88 T 19-04-2016 IPR023009 Tyrosine recombinase XerC/XerD AMF_RS05145 a62d24f37f0729e614dd02f83811bbdb 312 PANTHER PTHR30349:SF5 7 305 4.9E-79 T 19-04-2016 AMF_RS05145 a62d24f37f0729e614dd02f83811bbdb 312 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 7 86 1.0E-16 T 19-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMF_RS05145 a62d24f37f0729e614dd02f83811bbdb 312 PANTHER PTHR30349 7 305 4.9E-79 T 19-04-2016 AMF_RS05145 a62d24f37f0729e614dd02f83811bbdb 312 Gene3D G3DSA:1.10.150.130 4 98 2.5E-25 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMF_RS05145 a62d24f37f0729e614dd02f83811bbdb 312 Pfam PF00589 Phage integrase family 110 292 1.8E-34 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMF_RS05145 a62d24f37f0729e614dd02f83811bbdb 312 SUPERFAMILY SSF56349 6 300 8.83E-52 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMF_RS05720 57b40184194cc83057b443a72422ac32 190 Pfam PF01330 RuvA N terminal domain 1 63 2.9E-14 T 19-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMF_RS05720 57b40184194cc83057b443a72422ac32 190 Pfam PF07499 RuvA, C-terminal domain 148 189 3.3E-8 T 19-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AMF_RS05720 57b40184194cc83057b443a72422ac32 190 Gene3D G3DSA:2.40.50.140 1 66 5.1E-15 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05720 57b40184194cc83057b443a72422ac32 190 PANTHER PTHR33796 2 190 9.2E-33 T 19-04-2016 AMF_RS05720 57b40184194cc83057b443a72422ac32 190 Gene3D G3DSA:1.10.150.20 68 138 2.0E-18 T 19-04-2016 AMF_RS05720 57b40184194cc83057b443a72422ac32 190 Gene3D G3DSA:1.10.8.10 147 186 9.1E-8 T 19-04-2016 AMF_RS05720 57b40184194cc83057b443a72422ac32 190 Pfam PF14520 Helix-hairpin-helix domain 74 128 1.3E-9 T 19-04-2016 AMF_RS05720 57b40184194cc83057b443a72422ac32 190 SUPERFAMILY SSF46929 148 189 2.09E-5 T 19-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AMF_RS05720 57b40184194cc83057b443a72422ac32 190 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 189 21.249 T 19-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMF_RS05720 57b40184194cc83057b443a72422ac32 190 SUPERFAMILY SSF50249 1 64 4.23E-9 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05720 57b40184194cc83057b443a72422ac32 190 SUPERFAMILY SSF47781 67 138 2.17E-15 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMF_RS05240 0786794e85e3af71a5fa494c01cdcc41 156 Pfam PF01617 Surface antigen 7 156 1.6E-65 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS05240 0786794e85e3af71a5fa494c01cdcc41 156 Gene3D G3DSA:2.40.160.20 39 156 1.3E-17 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05240 0786794e85e3af71a5fa494c01cdcc41 156 SUPERFAMILY SSF56925 37 156 3.4E-17 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS07665 1c57798b5d7d32edd4ce4ad7cb57695f 247 Gene3D G3DSA:1.10.10.200 1 79 4.3E-33 T 19-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like AMF_RS07665 1c57798b5d7d32edd4ce4ad7cb57695f 247 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 240 4.4E-79 T 19-04-2016 IPR002876 Transcriptional regulator TACO1-like AMF_RS07665 1c57798b5d7d32edd4ce4ad7cb57695f 247 Gene3D G3DSA:3.30.70.980 136 209 1.9E-13 T 19-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 AMF_RS07665 1c57798b5d7d32edd4ce4ad7cb57695f 247 SUPERFAMILY SSF75625 5 243 5.1E-76 T 19-04-2016 IPR029072 YebC-like AMF_RS07665 1c57798b5d7d32edd4ce4ad7cb57695f 247 Pfam PF01709 Transcriptional regulator 5 239 2.9E-78 T 19-04-2016 IPR002876 Transcriptional regulator TACO1-like AMF_RS07665 1c57798b5d7d32edd4ce4ad7cb57695f 247 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 245 30.223 T 19-04-2016 IPR002876 Transcriptional regulator TACO1-like AMF_RS07665 1c57798b5d7d32edd4ce4ad7cb57695f 247 PANTHER PTHR12532 1 247 2.1E-85 T 19-04-2016 IPR002876 Transcriptional regulator TACO1-like AMF_RS07665 1c57798b5d7d32edd4ce4ad7cb57695f 247 Gene3D G3DSA:3.30.1270.10 82 135 1.8E-30 T 19-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 AMF_RS07665 1c57798b5d7d32edd4ce4ad7cb57695f 247 Gene3D G3DSA:3.30.1270.10 218 243 1.8E-30 T 19-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 AMF_RS07665 1c57798b5d7d32edd4ce4ad7cb57695f 247 PANTHER PTHR12532:SF0 1 247 2.1E-85 T 19-04-2016 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 Gene3D G3DSA:1.10.1060.10 225 344 2.6E-6 T 19-04-2016 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 Gene3D G3DSA:2.40.30.10 819 919 4.1E-16 T 19-04-2016 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 SUPERFAMILY SSF63380 820 920 4.54E-12 T 19-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 SUPERFAMILY SSF51971 448 574 2.35E-20 T 19-04-2016 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 SUPERFAMILY SSF51971 643 718 2.35E-20 T 19-04-2016 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 SUPERFAMILY SSF51971 372 407 2.35E-20 T 19-04-2016 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 553 571 3.6E-7 T 19-04-2016 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 375 394 3.6E-7 T 19-04-2016 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 499 517 3.6E-7 T 19-04-2016 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 Gene3D G3DSA:3.40.50.80 922 1043 4.2E-14 T 19-04-2016 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 373 731 3.2E-11 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 Gene3D G3DSA:3.50.50.60 443 571 2.5E-12 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 Gene3D G3DSA:3.50.50.60 371 387 2.5E-12 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 Gene3D G3DSA:3.50.50.60 659 796 5.9E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 Gene3D G3DSA:3.50.50.60 388 433 5.9E-10 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS06785 070191964a14e748205fcedfa8e4448e 1133 SUPERFAMILY SSF52343 916 1098 1.02E-15 T 19-04-2016 AMF_RS07915 857c7f866bbd2b5dfa19eedea2b230d4 531 Gene3D G3DSA:2.40.160.10 116 186 2.5E-8 T 19-04-2016 IPR023614 Porin domain AMF_RS07915 857c7f866bbd2b5dfa19eedea2b230d4 531 Gene3D G3DSA:2.40.160.10 329 531 2.5E-8 T 19-04-2016 IPR023614 Porin domain AMF_RS07915 857c7f866bbd2b5dfa19eedea2b230d4 531 Gene3D G3DSA:2.40.160.10 251 284 2.5E-8 T 19-04-2016 IPR023614 Porin domain AMF_RS07915 857c7f866bbd2b5dfa19eedea2b230d4 531 Pfam PF13609 Gram-negative porin 94 487 5.4E-13 T 19-04-2016 AMF_RS07915 857c7f866bbd2b5dfa19eedea2b230d4 531 SUPERFAMILY SSF56935 253 280 9.42E-14 T 19-04-2016 AMF_RS07915 857c7f866bbd2b5dfa19eedea2b230d4 531 SUPERFAMILY SSF56935 330 531 9.42E-14 T 19-04-2016 AMF_RS07915 857c7f866bbd2b5dfa19eedea2b230d4 531 SUPERFAMILY SSF56935 116 189 9.42E-14 T 19-04-2016 AMF_RS08080 00e947dceacdf999a1daa77c33bf1524 295 Hamap MF_00206 Lipoyl synthase [lipA]. 1 291 147.197 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMF_RS08080 00e947dceacdf999a1daa77c33bf1524 295 SMART SM00729 50 257 6.5E-12 T 19-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AMF_RS08080 00e947dceacdf999a1daa77c33bf1524 295 PANTHER PTHR10949 1 282 4.8E-152 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMF_RS08080 00e947dceacdf999a1daa77c33bf1524 295 PIRSF PIRSF005963 1 294 1.4E-131 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMF_RS08080 00e947dceacdf999a1daa77c33bf1524 295 SUPERFAMILY SSF102114 15 277 3.01E-63 T 19-04-2016 AMF_RS08080 00e947dceacdf999a1daa77c33bf1524 295 TIGRFAM TIGR00510 lipA: lipoyl synthase 3 282 7.4E-113 T 19-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 AMF_RS08080 00e947dceacdf999a1daa77c33bf1524 295 Pfam PF04055 Radical SAM superfamily 57 216 9.7E-12 T 19-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 AMF_RS08080 00e947dceacdf999a1daa77c33bf1524 295 Gene3D G3DSA:3.20.20.70 19 286 3.3E-69 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 529 547 - T 19-04-2016 IPR028299 ClpA/B, conserved site 2 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 Pfam PF07724 AAA domain (Cdc48 subfamily) 497 659 6.6E-44 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 SMART SM01086 666 755 1.1E-15 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 SUPERFAMILY SSF52540 448 728 6.12E-66 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 PANTHER PTHR11638 2 138 0.0 T 19-04-2016 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 Gene3D G3DSA:1.10.1780.10 2 138 2.7E-27 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 502 520 1.1E-33 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 573 591 1.1E-33 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 544 562 1.1E-33 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 606 620 1.1E-33 T 19-04-2016 IPR001270 ClpA/B family GO:0005524 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 SUPERFAMILY SSF81923 2 140 3.66E-43 T 19-04-2016 IPR004176 Clp, N-terminal GO:0019538 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 Gene3D G3DSA:1.10.8.60 677 761 1.2E-18 T 19-04-2016 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 Gene3D G3DSA:3.40.50.300 454 676 1.9E-52 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 223 336 4.3E-11 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 PANTHER PTHR11638 161 761 0.0 T 19-04-2016 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 SMART SM00382 498 649 5.0E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 SMART SM00382 218 364 3.5E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 PANTHER PTHR11638:SF111 161 761 0.0 T 19-04-2016 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 666 746 7.6E-14 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 Gene3D G3DSA:3.40.50.300 181 360 9.4E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 SUPERFAMILY SSF52540 181 424 4.86E-58 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 314 326 - T 19-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 Gene3D G3DSA:1.10.8.60 363 430 1.0E-24 T 19-04-2016 AMF_RS07745 d4b0c911f7f201f3720392f47c1be468 768 PANTHER PTHR11638:SF111 2 138 0.0 T 19-04-2016 AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Gene3D G3DSA:3.90.230.10 284 537 2.0E-61 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Pfam PF16188 C-terminal region of peptidase_M24 511 570 1.3E-19 T 19-04-2016 IPR032416 Peptidase M24, C-terminal domain AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 SUPERFAMILY SSF53092 3 127 1.38E-9 T 19-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Gene3D G3DSA:3.40.350.10 3 126 1.1E-12 T 19-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 SUPERFAMILY SSF55920 286 536 1.03E-58 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Pfam PF01321 Creatinase/Prolidase N-terminal domain 5 126 2.9E-12 T 19-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Pfam PF16189 Creatinase/Prolidase N-terminal domain 140 289 3.7E-24 T 19-04-2016 AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 Pfam PF00557 Metallopeptidase family M24 293 505 4.8E-46 T 19-04-2016 IPR000994 Peptidase M24, structural domain AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 PANTHER PTHR10804 265 568 5.0E-169 T 19-04-2016 AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 PANTHER PTHR10804 11 171 5.0E-169 T 19-04-2016 AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 PANTHER PTHR10804:SF105 265 568 5.0E-169 T 19-04-2016 AMF_RS08130 0c21334a8713c14eb5ee1c5b6a62e9e4 570 PANTHER PTHR10804:SF105 11 171 5.0E-169 T 19-04-2016 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 SMART SM00562 2 139 1.1E-76 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 2 137 33.924 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 PRINTS PR01243 Nucleoside diphosphate kinase signature 49 68 5.5E-39 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 PRINTS PR01243 Nucleoside diphosphate kinase signature 69 86 5.5E-39 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 PRINTS PR01243 Nucleoside diphosphate kinase signature 5 27 5.5E-39 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 PRINTS PR01243 Nucleoside diphosphate kinase signature 113 132 5.5E-39 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 PRINTS PR01243 Nucleoside diphosphate kinase signature 90 106 5.5E-39 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 113 121 - T 19-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 PANTHER PTHR11349 3 139 7.1E-67 T 19-04-2016 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 Gene3D G3DSA:3.30.70.141 2 139 1.5E-56 T 19-04-2016 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 SUPERFAMILY SSF54919 2 140 1.31E-56 T 19-04-2016 AMF_RS09295 fda5210c129a708209b382557ef37ec4 145 Pfam PF00334 Nucleoside diphosphate kinase 3 137 1.6E-53 T 19-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS08500 7a53c1cab708f011dcbe41fbf7b2ab59 261 Gene3D G3DSA:3.40.1280.10 105 254 4.5E-48 T 19-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMF_RS08500 7a53c1cab708f011dcbe41fbf7b2ab59 261 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 12 86 3.3E-9 T 19-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 AMF_RS08500 7a53c1cab708f011dcbe41fbf7b2ab59 261 SUPERFAMILY SSF75217 105 255 3.34E-45 T 19-04-2016 IPR029028 Alpha/beta knot methyltransferases AMF_RS08500 7a53c1cab708f011dcbe41fbf7b2ab59 261 Gene3D G3DSA:3.30.1330.30 11 83 2.3E-8 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMF_RS08500 7a53c1cab708f011dcbe41fbf7b2ab59 261 SUPERFAMILY SSF55315 7 85 9.77E-12 T 19-04-2016 IPR029064 50S ribosomal protein L30e-like AMF_RS08500 7a53c1cab708f011dcbe41fbf7b2ab59 261 PANTHER PTHR12029 3 255 3.9E-55 T 19-04-2016 AMF_RS08500 7a53c1cab708f011dcbe41fbf7b2ab59 261 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 13 251 5.4E-55 T 19-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 AMF_RS08500 7a53c1cab708f011dcbe41fbf7b2ab59 261 SMART SM00967 12 89 2.3E-11 T 19-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 AMF_RS08500 7a53c1cab708f011dcbe41fbf7b2ab59 261 Pfam PF00588 SpoU rRNA Methylase family 109 249 1.8E-39 T 19-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 Gene3D G3DSA:3.50.50.60 254 333 3.5E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 Gene3D G3DSA:3.50.50.60 10 129 3.5E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 Hamap MF_01685 Ferredoxin--NADP reductase. 9 336 39.78 T 19-04-2016 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101|MetaCyc: PWY-7230 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 68 78 5.0E-18 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 115 123 5.0E-18 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 154 178 5.0E-18 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 11 33 5.0E-18 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 283 301 5.0E-18 T 19-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PANTHER PTHR22912:SF158 11 314 9.6E-82 T 19-04-2016 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 Gene3D G3DSA:3.50.50.60 131 249 3.6E-17 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 304 1.8E-20 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PANTHER PTHR22912 11 314 9.6E-82 T 19-04-2016 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 5.6E-13 T 19-04-2016 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 114 132 5.6E-13 T 19-04-2016 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 273 295 5.6E-13 T 19-04-2016 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 5.6E-13 T 19-04-2016 AMF_RS07385 ecac011a612df7a9d2da8ebe89b299b1 340 SUPERFAMILY SSF51905 11 315 1.51E-37 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS06185 b43c75e9d5725c4a01cc9f4b3ff3f830 257 SUPERFAMILY SSF55729 157 251 4.63E-15 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMF_RS06185 b43c75e9d5725c4a01cc9f4b3ff3f830 257 Gene3D G3DSA:3.40.630.30 162 252 4.1E-12 T 19-04-2016 IPR016181 Acyl-CoA N-acyltransferase AMF_RS06185 b43c75e9d5725c4a01cc9f4b3ff3f830 257 Pfam PF00583 Acetyltransferase (GNAT) family 173 244 9.6E-7 T 19-04-2016 IPR000182 GNAT domain GO:0008080 AMF_RS07290 72a80823a0269fccdbda8f06d72aaa94 229 SUPERFAMILY SSF56925 103 219 5.1E-7 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS07290 72a80823a0269fccdbda8f06d72aaa94 229 Gene3D G3DSA:2.40.160.20 106 220 5.3E-7 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 Gene3D G3DSA:1.10.8.10 155 210 1.7E-19 T 19-04-2016 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 Gene3D G3DSA:1.10.8.10 251 281 1.7E-19 T 19-04-2016 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 372 442 6.1E-6 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 48 480 1.7E-168 T 19-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 97 172 6.6E-6 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 PANTHER PTHR11262 40 149 1.4E-189 T 19-04-2016 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 PANTHER PTHR11262 256 480 1.4E-189 T 19-04-2016 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 Gene3D G3DSA:1.10.8.60 372 480 3.0E-35 T 19-04-2016 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 Pfam PF07724 AAA domain (Cdc48 subfamily) 237 366 3.6E-35 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 Gene3D G3DSA:3.40.50.300 287 369 4.3E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 Gene3D G3DSA:3.40.50.300 55 154 4.3E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 PANTHER PTHR11262:SF3 40 149 1.4E-189 T 19-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 PANTHER PTHR11262:SF3 256 480 1.4E-189 T 19-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 SMART SM01086 372 466 1.6E-20 T 19-04-2016 IPR019489 Clp ATPase, C-terminal AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 SMART SM00382 93 369 1.6E-8 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS08810 269b6b79762aa68f4032c2929ceaf8df 480 SUPERFAMILY SSF52540 50 476 5.78E-76 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05245 1351d1729c23960721865c16338ec4e2 428 Gene3D G3DSA:1.20.1250.20 234 416 1.3E-16 T 19-04-2016 AMF_RS05245 1351d1729c23960721865c16338ec4e2 428 Gene3D G3DSA:1.20.1250.20 13 207 3.6E-12 T 19-04-2016 AMF_RS05245 1351d1729c23960721865c16338ec4e2 428 SUPERFAMILY SSF103473 9 420 5.75E-48 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMF_RS05245 1351d1729c23960721865c16338ec4e2 428 PANTHER PTHR23508 2 419 3.4E-107 T 19-04-2016 AMF_RS05245 1351d1729c23960721865c16338ec4e2 428 Pfam PF00083 Sugar (and other) transporter 13 212 1.3E-17 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMF_RS05245 1351d1729c23960721865c16338ec4e2 428 Pfam PF00083 Sugar (and other) transporter 224 414 4.9E-7 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMF_RS05245 1351d1729c23960721865c16338ec4e2 428 PANTHER PTHR23508:SF1 2 419 3.4E-107 T 19-04-2016 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 1 328 36.485 T 19-04-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 PANTHER PTHR10055 1 329 1.6E-164 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 Gene3D G3DSA:1.10.240.10 204 321 5.8E-18 T 19-04-2016 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 SUPERFAMILY SSF52374 2 327 1.21E-84 T 19-04-2016 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 Pfam PF00579 tRNA synthetases class I (W and Y) 2 275 2.3E-73 T 19-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 13 29 5.2E-28 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 193 203 5.2E-28 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 64 83 5.2E-28 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 139 160 5.2E-28 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 8 18 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 2 327 3.0E-92 T 19-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 PANTHER PTHR10055:SF10 1 329 1.6E-164 T 19-04-2016 AMF_RS05120 c7fc35b59951ee0edb4f5330c8123832 329 Gene3D G3DSA:3.40.50.620 2 203 5.0E-82 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS08305 1c336a577c59abd66bce4358ec3e69de 309 Pfam PF01040 UbiA prenyltransferase family 44 285 2.2E-49 T 19-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 AMF_RS08305 1c336a577c59abd66bce4358ec3e69de 309 PANTHER PTHR11048 27 304 2.5E-67 T 19-04-2016 AMF_RS08305 1c336a577c59abd66bce4358ec3e69de 309 PANTHER PTHR11048:SF28 27 304 2.5E-67 T 19-04-2016 AMF_RS08305 1c336a577c59abd66bce4358ec3e69de 309 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 83 105 - T 19-04-2016 IPR030470 UbiA prenyltransferase conserved site AMF_RS08850 5d264af381505807a6b2861b22ff479f 309 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 26 248 1.1E-55 T 19-04-2016 IPR017689 Outer membrane protein assembly factor BamD AMF_RS08850 5d264af381505807a6b2861b22ff479f 309 SUPERFAMILY SSF48452 204 252 7.01E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS08850 5d264af381505807a6b2861b22ff479f 309 SUPERFAMILY SSF48452 52 107 7.01E-11 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS08850 5d264af381505807a6b2861b22ff479f 309 PANTHER PTHR37423 25 236 1.1E-33 T 19-04-2016 AMF_RS08850 5d264af381505807a6b2861b22ff479f 309 Gene3D G3DSA:1.25.40.10 192 247 1.0E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS08850 5d264af381505807a6b2861b22ff479f 309 Gene3D G3DSA:1.25.40.10 55 129 1.0E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS08850 5d264af381505807a6b2861b22ff479f 309 Pfam PF13525 Outer membrane lipoprotein 53 242 5.5E-40 T 19-04-2016 AMF_RS09930 5f773158c1e433d428fd0afec6bf3508 100 Gene3D G3DSA:3.30.110.10 4 90 2.0E-29 T 19-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 AMF_RS09930 5f773158c1e433d428fd0afec6bf3508 100 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 6 89 1.7E-29 T 19-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 AMF_RS09930 5f773158c1e433d428fd0afec6bf3508 100 PANTHER PTHR10938 6 87 1.1E-25 T 19-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 AMF_RS09930 5f773158c1e433d428fd0afec6bf3508 100 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 6 89 1.1E-22 T 19-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 AMF_RS09930 5f773158c1e433d428fd0afec6bf3508 100 SUPERFAMILY SSF55200 7 89 1.31E-27 T 19-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PANTHER PTHR10422:SF18 1 515 2.7E-292 T 19-04-2016 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PANTHER PTHR10422 1 515 2.7E-292 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 21 464 1.4E-144 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 13 516 3.0E-210 T 19-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 243 297 - T 19-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 311 332 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 161 179 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 59 82 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 129 141 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 287 302 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 424 445 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 87 111 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 241 262 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 346 364 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 12 37 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 374 393 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 PRINTS PR01165 Cytochrome c oxidase subunit I signature 190 209 1.8E-137 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 Gene3D G3DSA:1.20.210.10 24 486 9.3E-214 T 19-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08840 1486ac0108ce33857606908db9e4560b 518 SUPERFAMILY SSF81442 9 517 2.22E-207 T 19-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 155 3.5E-22 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 172 305 1.3E-22 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 Gene3D G3DSA:3.30.300.20 356 431 6.1E-25 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 Gene3D G3DSA:3.40.50.300 170 355 4.2E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 Gene3D G3DSA:3.40.50.300 3 169 1.5E-39 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 PANTHER PTHR11649:SF5 1 431 1.2E-107 T 19-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 SUPERFAMILY SSF52540 167 435 6.32E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 429 2.4E-148 T 19-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 350 429 2.4E-24 T 19-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 Pfam PF01926 50S ribosome-binding GTPase 3 118 1.9E-25 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 Pfam PF01926 50S ribosome-binding GTPase 176 293 6.4E-21 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 PIRSF PIRSF006485 1 437 3.5E-156 T 19-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 PANTHER PTHR11649 1 431 1.2E-107 T 19-04-2016 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 SUPERFAMILY SSF52540 3 164 1.09E-38 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 4 24 6.8E-7 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 88 6.8E-7 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS08000 9795fe9fc89c69be470f5487eb01bf26 438 Hamap MF_00195 GTPase Der [der]. 1 432 32.28 T 19-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 AMF_RS06620 ea762e497d29a8eebad70180c5771e1c 937 Pfam PF12705 PD-(D/E)XK nuclease superfamily 683 910 8.1E-7 T 19-04-2016 AMF_RS09590 82444c9836bccd9602924817ad74fd73 398 Gene3D G3DSA:2.40.160.20 280 353 2.0E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09590 82444c9836bccd9602924817ad74fd73 398 Gene3D G3DSA:2.40.160.20 94 136 2.0E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09590 82444c9836bccd9602924817ad74fd73 398 Gene3D G3DSA:2.40.160.20 31 48 2.0E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09590 82444c9836bccd9602924817ad74fd73 398 Pfam PF01617 Surface antigen 31 396 1.4E-30 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS09590 82444c9836bccd9602924817ad74fd73 398 SUPERFAMILY SSF56925 95 126 6.8E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09590 82444c9836bccd9602924817ad74fd73 398 SUPERFAMILY SSF56925 31 49 6.8E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09590 82444c9836bccd9602924817ad74fd73 398 SUPERFAMILY SSF56925 280 354 6.8E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09960 c510e330f38c509ca575b38e786e269b 362 PANTHER PTHR21327 118 360 2.1E-63 T 19-04-2016 AMF_RS09960 c510e330f38c509ca575b38e786e269b 362 Pfam PF00925 GTP cyclohydrolase II 185 338 1.2E-44 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMF_RS09960 c510e330f38c509ca575b38e786e269b 362 PANTHER PTHR21327:SF6 118 360 2.1E-63 T 19-04-2016 AMF_RS09960 c510e330f38c509ca575b38e786e269b 362 SUPERFAMILY SSF142695 187 340 1.23E-43 T 19-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 AMF_RS05410 7b148ccdf5328282a5ab6be53805d525 67 Pfam PF02609 Exonuclease VII small subunit 9 59 3.8E-18 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_RS05410 7b148ccdf5328282a5ab6be53805d525 67 SUPERFAMILY SSF116842 8 65 2.62E-17 T 19-04-2016 AMF_RS05410 7b148ccdf5328282a5ab6be53805d525 67 PIRSF PIRSF006488 2 67 6.2E-19 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_RS05410 7b148ccdf5328282a5ab6be53805d525 67 Gene3D G3DSA:1.10.287.1040 8 65 6.4E-19 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_RS05410 7b148ccdf5328282a5ab6be53805d525 67 PANTHER PTHR34137 9 67 7.0E-13 T 19-04-2016 AMF_RS05410 7b148ccdf5328282a5ab6be53805d525 67 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 26 47 2.0E-6 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_RS05410 7b148ccdf5328282a5ab6be53805d525 67 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 8 67 13.202 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_RS05410 7b148ccdf5328282a5ab6be53805d525 67 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 9 63 5.1E-21 T 19-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMF_RS07780 ecd5bec25f4af5d6538dcc21ffe2c72b 246 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 104 130 2.2E-38 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_RS07780 ecd5bec25f4af5d6538dcc21ffe2c72b 246 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 161 189 2.2E-38 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_RS07780 ecd5bec25f4af5d6538dcc21ffe2c72b 246 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 7 34 2.2E-38 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_RS07780 ecd5bec25f4af5d6538dcc21ffe2c72b 246 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 86 104 2.2E-38 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_RS07780 ecd5bec25f4af5d6538dcc21ffe2c72b 246 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 233 2.6E-62 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_RS07780 ecd5bec25f4af5d6538dcc21ffe2c72b 246 ProSitePatterns PS01218 TatC family signature. 161 180 - T 19-04-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site AMF_RS07780 ecd5bec25f4af5d6538dcc21ffe2c72b 246 PANTHER PTHR30371 2 246 1.7E-80 T 19-04-2016 AMF_RS07780 ecd5bec25f4af5d6538dcc21ffe2c72b 246 Pfam PF00902 Sec-independent protein translocase protein (TatC) 11 228 7.0E-65 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_RS07780 ecd5bec25f4af5d6538dcc21ffe2c72b 246 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 1 246 18.349 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_RS07780 ecd5bec25f4af5d6538dcc21ffe2c72b 246 PANTHER PTHR30371:SF0 2 246 1.7E-80 T 19-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMF_RS07980 5d043199980bb44dfb6e8090ad09f34c 83 SUPERFAMILY SSF50249 4 82 1.71E-18 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS07980 5d043199980bb44dfb6e8090ad09f34c 83 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 5 77 6.2E-20 T 19-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMF_RS07980 5d043199980bb44dfb6e8090ad09f34c 83 PANTHER PTHR33370 4 82 6.0E-18 T 19-04-2016 AMF_RS07980 5d043199980bb44dfb6e8090ad09f34c 83 Pfam PF01176 Translation initiation factor 1A / IF-1 11 77 3.3E-15 T 19-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AMF_RS07980 5d043199980bb44dfb6e8090ad09f34c 83 Gene3D G3DSA:2.40.50.140 3 78 1.8E-24 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS09280 42537eaa3f288200f0edb26668b2fc4d 478 Gene3D G3DSA:3.40.718.10 2 342 4.9E-116 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMF_RS09280 42537eaa3f288200f0edb26668b2fc4d 478 SMART SM01329 4 335 2.4E-136 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMF_RS09280 42537eaa3f288200f0edb26668b2fc4d 478 PANTHER PTHR11835 4 347 3.9E-175 T 19-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 AMF_RS09280 42537eaa3f288200f0edb26668b2fc4d 478 TIGRFAM TIGR02924 ICDH_alpha: isocitrate dehydrogenase 3 475 1.4E-224 T 19-04-2016 IPR014273 Isocitrate dehydrogenase, alphaproteobacteria-type GO:0004450|GO:0006097|GO:0006099|GO:0046872|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMF_RS09280 42537eaa3f288200f0edb26668b2fc4d 478 SUPERFAMILY SSF53659 2 339 3.78E-109 T 19-04-2016 AMF_RS09280 42537eaa3f288200f0edb26668b2fc4d 478 PANTHER PTHR11835:SF43 4 347 3.9E-175 T 19-04-2016 AMF_RS09280 42537eaa3f288200f0edb26668b2fc4d 478 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 335 4.9E-84 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMF_RS09280 42537eaa3f288200f0edb26668b2fc4d 478 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 226 245 - T 19-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 PANTHER PTHR23305:SF12 1 363 4.1E-172 T 19-04-2016 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.3E-131 T 19-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 PIRSF PIRSF006641 1 364 5.8E-145 T 19-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 Gene3D G3DSA:3.40.50.300 3 131 1.3E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 Gene3D G3DSA:3.40.50.300 200 254 1.3E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 Gene3D G3DSA:3.10.20.30 259 363 9.0E-45 T 19-04-2016 IPR012675 Beta-grasp domain AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 4.6E-35 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 4.6E-35 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 4.6E-35 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 4.6E-35 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 SUPERFAMILY SSF52540 3 302 7.72E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 364 39.566 T 19-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 Gene3D G3DSA:1.10.150.300 132 199 3.8E-18 T 19-04-2016 IPR023192 TGS-like domain AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 PANTHER PTHR23305 1 363 4.1E-172 T 19-04-2016 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 Pfam PF01926 50S ribosome-binding GTPase 5 116 1.2E-22 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 Pfam PF06071 Protein of unknown function (DUF933) 280 363 2.5E-38 T 19-04-2016 IPR013029 Domain of unknown function DUF933 AMF_RS10115 b3545f4fba87cc1528c24d9f7a7e85d9 364 SUPERFAMILY SSF81271 280 361 9.81E-35 T 19-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMF_RS09080 b8d5cb9e24c26a2a6d80a97b87981b8d 170 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 2 154 13.736 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMF_RS09080 b8d5cb9e24c26a2a6d80a97b87981b8d 170 PANTHER PTHR33695:SF1 5 144 1.8E-32 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMF_RS09080 b8d5cb9e24c26a2a6d80a97b87981b8d 170 PANTHER PTHR33695 5 144 1.8E-32 T 19-04-2016 AMF_RS09080 b8d5cb9e24c26a2a6d80a97b87981b8d 170 TIGRFAM TIGR00077 lspA: signal peptidase II 8 152 3.3E-27 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMF_RS09080 b8d5cb9e24c26a2a6d80a97b87981b8d 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 93 108 4.7E-13 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMF_RS09080 b8d5cb9e24c26a2a6d80a97b87981b8d 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 48 56 4.7E-13 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMF_RS09080 b8d5cb9e24c26a2a6d80a97b87981b8d 170 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 129 145 4.7E-13 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMF_RS09080 b8d5cb9e24c26a2a6d80a97b87981b8d 170 Pfam PF01252 Signal peptidase (SPase) II 11 145 3.6E-31 T 19-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 AMF_RS09410 e852af310a91ba7572087e7e8ee24477 149 TIGRFAM TIGR00086 smpB: SsrA-binding protein 4 144 1.7E-53 T 19-04-2016 IPR000037 SsrA-binding protein GO:0003723 AMF_RS09410 e852af310a91ba7572087e7e8ee24477 149 ProSitePatterns PS01317 SsrA-binding protein. 22 34 - T 19-04-2016 IPR020081 SsrA-binding protein, conserved site AMF_RS09410 e852af310a91ba7572087e7e8ee24477 149 Pfam PF01668 SmpB protein 3 65 3.1E-27 T 19-04-2016 IPR000037 SsrA-binding protein GO:0003723 AMF_RS09410 e852af310a91ba7572087e7e8ee24477 149 Gene3D G3DSA:2.40.280.10 3 123 2.7E-45 T 19-04-2016 IPR023620 Small protein B AMF_RS09410 e852af310a91ba7572087e7e8ee24477 149 PANTHER PTHR30308:SF2 1 148 7.1E-63 T 19-04-2016 AMF_RS09410 e852af310a91ba7572087e7e8ee24477 149 SUPERFAMILY SSF74982 2 128 3.4E-45 T 19-04-2016 IPR023620 Small protein B AMF_RS09410 e852af310a91ba7572087e7e8ee24477 149 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 4 128 3.0E-46 T 19-04-2016 IPR000037 SsrA-binding protein GO:0003723 AMF_RS09410 e852af310a91ba7572087e7e8ee24477 149 Hamap MF_00023 SsrA-binding protein [smpB]. 1 149 62.985 T 19-04-2016 IPR000037 SsrA-binding protein GO:0003723 AMF_RS09410 e852af310a91ba7572087e7e8ee24477 149 PANTHER PTHR30308 1 148 7.1E-63 T 19-04-2016 AMF_RS06605 3a1f13b9aec15770624ff1ab688cabef 506 Gene3D G3DSA:3.40.50.620 234 502 5.0E-68 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS06605 3a1f13b9aec15770624ff1ab688cabef 506 TIGRFAM TIGR00552 nadE: NAD+ synthetase 241 499 6.0E-60 T 19-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 AMF_RS06605 3a1f13b9aec15770624ff1ab688cabef 506 Pfam PF00795 Carbon-nitrogen hydrolase 6 95 4.4E-5 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMF_RS06605 3a1f13b9aec15770624ff1ab688cabef 506 Pfam PF02540 NAD synthase 242 498 2.0E-71 T 19-04-2016 IPR022310 NAD/GMP synthase AMF_RS06605 3a1f13b9aec15770624ff1ab688cabef 506 SUPERFAMILY SSF56317 4 218 7.64E-12 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMF_RS06605 3a1f13b9aec15770624ff1ab688cabef 506 PANTHER PTHR23090 232 506 2.7E-74 T 19-04-2016 AMF_RS06605 3a1f13b9aec15770624ff1ab688cabef 506 SUPERFAMILY SSF52402 233 504 3.03E-68 T 19-04-2016 AMF_RS06605 3a1f13b9aec15770624ff1ab688cabef 506 Gene3D G3DSA:3.60.110.10 3 104 1.4E-8 T 19-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AMF_RS06875 5e4f5fd45293013062425f95925570b0 320 PANTHER PTHR11082:SF25 11 314 3.2E-119 T 19-04-2016 AMF_RS06875 5e4f5fd45293013062425f95925570b0 320 Gene3D G3DSA:3.20.20.70 11 239 1.1E-79 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS06875 5e4f5fd45293013062425f95925570b0 320 Pfam PF01207 Dihydrouridine synthase (Dus) 13 310 4.5E-102 T 19-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMF_RS06875 5e4f5fd45293013062425f95925570b0 320 PANTHER PTHR11082 11 314 3.2E-119 T 19-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMF_RS06875 5e4f5fd45293013062425f95925570b0 320 SUPERFAMILY SSF51395 11 315 1.06E-88 T 19-04-2016 AMF_RS06875 5e4f5fd45293013062425f95925570b0 320 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 10 315 9.2E-117 T 19-04-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 AMF_RS06875 5e4f5fd45293013062425f95925570b0 320 Gene3D G3DSA:1.10.1200.80 249 315 3.2E-17 T 19-04-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 AMF_RS06875 5e4f5fd45293013062425f95925570b0 320 PIRSF PIRSF006621 2 319 4.1E-103 T 19-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMF_RS06875 5e4f5fd45293013062425f95925570b0 320 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 91 109 - T 19-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 SUPERFAMILY SSF52540 163 212 4.04E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 SUPERFAMILY SSF52540 3 131 4.04E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 PRINTS PR00094 Adenylate kinase signature 9 22 9.6E-24 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 PRINTS PR00094 Adenylate kinase signature 85 101 9.6E-24 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 PRINTS PR00094 Adenylate kinase signature 38 52 9.6E-24 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 PRINTS PR00094 Adenylate kinase signature 161 176 9.6E-24 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 Pfam PF00406 Adenylate kinase 10 189 1.2E-36 T 19-04-2016 AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 ProSitePatterns PS00113 Adenylate kinase signature. 85 96 - T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 Hamap MF_00235 Adenylate kinase [adk]. 6 212 31.999 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 Gene3D G3DSA:3.40.50.300 4 213 6.5E-53 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 PANTHER PTHR23359 6 212 3.8E-50 T 19-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMF_RS08375 6c208cb5529816e45ca987b2f4eaf2d7 216 TIGRFAM TIGR01351 adk: adenylate kinase 7 211 2.1E-57 T 19-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 AMF_RS09130 e724e067403a59b9cf7c1d4df62ab0b5 88 SUPERFAMILY SSF109910 6 82 7.19E-21 T 19-04-2016 IPR005631 Flavinator of succinate dehydrogenase AMF_RS09130 e724e067403a59b9cf7c1d4df62ab0b5 88 Gene3D G3DSA:1.10.150.250 7 82 3.0E-24 T 19-04-2016 IPR005631 Flavinator of succinate dehydrogenase AMF_RS09130 e724e067403a59b9cf7c1d4df62ab0b5 88 PANTHER PTHR12469 5 75 1.6E-18 T 19-04-2016 AMF_RS09130 e724e067403a59b9cf7c1d4df62ab0b5 88 Pfam PF03937 Flavinator of succinate dehydrogenase 10 81 1.7E-21 T 19-04-2016 IPR005631 Flavinator of succinate dehydrogenase AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 PANTHER PTHR13779:SF25 14 325 1.4E-139 T 19-04-2016 AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 Gene3D G3DSA:3.40.50.300 22 177 1.7E-32 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 331 141.574 T 19-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 Gene3D G3DSA:1.10.10.10 259 325 6.8E-26 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 SMART SM00382 52 183 1.3E-13 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 Gene3D G3DSA:1.10.8.60 184 257 2.1E-24 T 19-04-2016 AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 SUPERFAMILY SSF52540 21 237 6.26E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 PANTHER PTHR13779 14 325 1.4E-139 T 19-04-2016 AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 11 235 6.0E-106 T 19-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 325 4.0E-36 T 19-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 SUPERFAMILY SSF46785 259 325 1.52E-18 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 255 325 1.9E-25 T 19-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMF_RS05715 6e25c92f645de29ff2ef60d9f54cc8b2 331 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 26 325 5.7E-125 T 19-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 528 2.0E-94 T 19-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 PANTHER PTHR11353:SF64 19 549 1.5E-163 T 19-04-2016 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 Hamap MF_00600 60 kDa chaperonin [groL]. 1 549 35.516 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 SUPERFAMILY SSF52029 186 378 2.79E-75 T 19-04-2016 IPR027409 GroEL-like apical domain AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 Gene3D G3DSA:1.10.560.10 8 187 9.1E-29 T 19-04-2016 IPR027413 GroEL-like equatorial domain AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 ProSitePatterns PS00296 Chaperonins cpn60 signature. 407 418 - T 19-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 TIGRFAM TIGR02348 GroEL: chaperonin GroL 12 530 1.0E-189 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 PRINTS PR00298 60kDa chaperonin signature 268 291 1.0E-64 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 PRINTS PR00298 60kDa chaperonin signature 82 109 1.0E-64 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 PRINTS PR00298 60kDa chaperonin signature 352 377 1.0E-64 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 PRINTS PR00298 60kDa chaperonin signature 400 421 1.0E-64 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 PRINTS PR00298 60kDa chaperonin signature 26 52 1.0E-64 T 19-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 Gene3D G3DSA:1.10.560.10 371 520 3.1E-28 T 19-04-2016 IPR027413 GroEL-like equatorial domain AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 PANTHER PTHR11353 19 549 1.5E-163 T 19-04-2016 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 Gene3D G3DSA:3.50.7.10 188 370 6.3E-91 T 19-04-2016 IPR027409 GroEL-like apical domain AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 SUPERFAMILY SSF54849 136 204 4.81E-21 T 19-04-2016 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 SUPERFAMILY SSF48592 8 133 8.16E-51 T 19-04-2016 AMF_RS08650 72f4bc90c46c356daa3c63274fda842e 549 SUPERFAMILY SSF48592 408 525 8.16E-51 T 19-04-2016 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 SMART SM00959 38 80 1.7E-9 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 PANTHER PTHR15184:SF34 9 179 2.4E-172 T 19-04-2016 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 Hamap MF_01884 Transcription termination factor Rho [rho]. 34 454 204.696 T 19-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 SUPERFAMILY SSF50249 84 155 2.46E-22 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 PANTHER PTHR15184:SF34 196 453 2.4E-172 T 19-04-2016 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 Pfam PF07498 Rho termination factor, N-terminal domain 38 79 3.3E-10 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 Gene3D G3DSA:3.40.50.300 164 452 6.1E-105 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 Gene3D G3DSA:1.10.720.10 34 80 1.8E-15 T 19-04-2016 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 Gene3D G3DSA:2.40.50.140 84 148 1.5E-28 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 SUPERFAMILY SSF68912 34 79 1.22E-7 T 19-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 SMART SM00382 206 386 1.2E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 SUPERFAMILY SSF52540 124 407 4.34E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 SMART SM00357 85 151 4.7E-12 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 195 399 2.4E-27 T 19-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 TIGRFAM TIGR00767 rho: transcription termination factor Rho 36 453 5.6E-193 T 19-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 PANTHER PTHR15184 196 453 2.4E-172 T 19-04-2016 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 PANTHER PTHR15184 9 179 2.4E-172 T 19-04-2016 AMF_RS05285 f6d53936f4cce87818dc7f1fd4b5c77a 454 Pfam PF07497 Rho termination factor, RNA-binding domain 86 156 1.9E-25 T 19-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 5 358 5.4E-148 T 19-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 SUPERFAMILY SSF75620 11 354 4.84E-123 T 19-04-2016 AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 PANTHER PTHR11075 12 357 8.9E-165 T 19-04-2016 AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 Gene3D G3DSA:3.30.160.20 211 289 1.2E-34 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 19-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 3 358 37.703 T 19-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 Pfam PF00472 RF-1 domain 212 321 8.5E-42 T 19-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 Pfam PF03462 PCRF domain 12 204 8.8E-61 T 19-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 Gene3D G3DSA:1.20.58.410 7 93 7.2E-6 T 19-04-2016 AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 PANTHER PTHR11075:SF9 12 357 8.9E-165 T 19-04-2016 AMF_RS07880 da0dbda5a3582f503903ffef48cd6ca6 359 SMART SM00937 64 179 6.3E-51 T 19-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 AMF_RS07845 bec5a9be660397354bed765a56481d06 227 Pfam PF04335 VirB8 protein 17 208 1.1E-5 T 19-04-2016 IPR007430 Bacterial virulence protein VirB8 GO:0016020 AMF_RS07845 bec5a9be660397354bed765a56481d06 227 SUPERFAMILY SSF54427 89 225 9.2E-8 T 19-04-2016 IPR032710 NTF2-like domain AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 Gene3D G3DSA:3.50.50.60 12 183 2.4E-27 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 SMART SM01228 553 624 5.7E-34 T 19-04-2016 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 13 627 2.0E-235 T 19-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 378 401 - T 19-04-2016 IPR020595 MnmG-related, conserved site AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 161 170 3.8E-5 T 19-04-2016 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 14 36 3.8E-5 T 19-04-2016 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 11 631 39.136 T 19-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 PANTHER PTHR11806:SF0 12 632 0.0 T 19-04-2016 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 283 297 - T 19-04-2016 IPR020595 MnmG-related, conserved site AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 Pfam PF13932 GidA associated domain 412 622 5.9E-65 T 19-04-2016 IPR026904 GidA associated domain 3 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 Pfam PF01134 Glucose inhibited division protein A 15 407 2.2E-152 T 19-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 PANTHER PTHR11806 12 632 0.0 T 19-04-2016 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 SUPERFAMILY SSF51905 12 72 7.6E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS08705 15cac0d961a2f6b3a23c5255ef73719a 637 SUPERFAMILY SSF51905 103 270 7.6E-43 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS08545 a10ffe43a738da71a2475c5e301a74ee 354 Gene3D G3DSA:3.40.50.300 44 194 8.6E-16 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08545 a10ffe43a738da71a2475c5e301a74ee 354 PANTHER PTHR12169 7 330 1.3E-93 T 19-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 AMF_RS08545 a10ffe43a738da71a2475c5e301a74ee 354 Pfam PF03969 AFG1-like ATPase 9 353 1.5E-79 T 19-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 AMF_RS08545 a10ffe43a738da71a2475c5e301a74ee 354 SUPERFAMILY SSF52540 52 199 1.55E-13 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 PANTHER PTHR12534 7 273 2.1E-106 T 19-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 SUPERFAMILY SSF52313 9 232 1.23E-86 T 19-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 8 228 5.4E-91 T 19-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 5 238 39.053 T 19-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 Gene3D G3DSA:1.10.287.610 105 156 5.1E-18 T 19-04-2016 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 Gene3D G3DSA:3.40.50.10490 26 104 2.3E-62 T 19-04-2016 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 Gene3D G3DSA:3.40.50.10490 162 235 2.3E-62 T 19-04-2016 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 Pfam PF00318 Ribosomal protein S2 12 228 3.5E-87 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 PRINTS PR00395 Ribosomal protein S2 signature 92 109 7.97E-34 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 PRINTS PR00395 Ribosomal protein S2 signature 179 190 7.97E-34 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 PRINTS PR00395 Ribosomal protein S2 signature 9 27 7.97E-34 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 PRINTS PR00395 Ribosomal protein S2 signature 200 214 7.97E-34 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 PRINTS PR00395 Ribosomal protein S2 signature 162 179 7.97E-34 T 19-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 162 186 - T 19-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMF_RS07970 01d22109a6604a6ee00d849cba962662 327 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 9 20 - T 19-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMF_RS09430 0fc2781b5defc4c6864038e79c64ef1e 190 SUPERFAMILY SSF47928 14 113 3.01E-15 T 19-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain AMF_RS09430 0fc2781b5defc4c6864038e79c64ef1e 190 Pfam PF00213 ATP synthase delta (OSCP) subunit 14 181 2.5E-35 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMF_RS09430 0fc2781b5defc4c6864038e79c64ef1e 190 PRINTS PR00125 ATP synthase delta subunit signature 143 158 1.2E-9 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMF_RS09430 0fc2781b5defc4c6864038e79c64ef1e 190 PRINTS PR00125 ATP synthase delta subunit signature 14 33 1.2E-9 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMF_RS09430 0fc2781b5defc4c6864038e79c64ef1e 190 PRINTS PR00125 ATP synthase delta subunit signature 158 176 1.2E-9 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMF_RS09430 0fc2781b5defc4c6864038e79c64ef1e 190 PRINTS PR00125 ATP synthase delta subunit signature 93 107 1.2E-9 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMF_RS09430 0fc2781b5defc4c6864038e79c64ef1e 190 Gene3D G3DSA:1.10.520.20 14 113 2.3E-11 T 19-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain AMF_RS09430 0fc2781b5defc4c6864038e79c64ef1e 190 PANTHER PTHR11910 18 187 2.2E-31 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMF_RS09430 0fc2781b5defc4c6864038e79c64ef1e 190 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 14 181 4.3E-20 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMF_RS09430 0fc2781b5defc4c6864038e79c64ef1e 190 Hamap MF_01416 ATP synthase subunit delta [atpD]. 10 185 15.131 T 19-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 AMF_RS07410 8a5d882abe9235bad44903d4ea9112f6 169 Gene3D G3DSA:3.40.30.10 85 163 1.0E-9 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS07410 8a5d882abe9235bad44903d4ea9112f6 169 SUPERFAMILY SSF52833 10 167 9.17E-54 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS07410 8a5d882abe9235bad44903d4ea9112f6 169 PANTHER PTHR10371:SF3 7 168 1.3E-84 T 19-04-2016 AMF_RS07410 8a5d882abe9235bad44903d4ea9112f6 169 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 20 165 3.8E-56 T 19-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 AMF_RS07410 8a5d882abe9235bad44903d4ea9112f6 169 PIRSF PIRSF000216 1 169 8.3E-68 T 19-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 AMF_RS07410 8a5d882abe9235bad44903d4ea9112f6 169 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 122 140 - T 19-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 AMF_RS07410 8a5d882abe9235bad44903d4ea9112f6 169 PANTHER PTHR10371 7 168 1.3E-84 T 19-04-2016 AMF_RS07410 8a5d882abe9235bad44903d4ea9112f6 169 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 19 165 1.6E-57 T 19-04-2016 AMF_RS08860 ed7e50c91708b2049d936d7875839757 130 PANTHER PTHR33909:SF1 2 111 3.8E-27 T 19-04-2016 AMF_RS08860 ed7e50c91708b2049d936d7875839757 130 PANTHER PTHR33909 2 111 3.8E-27 T 19-04-2016 AMF_RS08860 ed7e50c91708b2049d936d7875839757 130 SMART SM01323 24 108 2.4E-39 T 19-04-2016 IPR003849 Preprotein translocase YajC AMF_RS08860 ed7e50c91708b2049d936d7875839757 130 Pfam PF02699 Preprotein translocase subunit 29 105 1.8E-26 T 19-04-2016 IPR003849 Preprotein translocase YajC AMF_RS08860 ed7e50c91708b2049d936d7875839757 130 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 29 108 7.3E-28 T 19-04-2016 IPR003849 Preprotein translocase YajC AMF_RS08860 ed7e50c91708b2049d936d7875839757 130 PRINTS PR01853 Bacterial YajC preprotein translocase signature 64 82 4.2E-15 T 19-04-2016 IPR003849 Preprotein translocase YajC AMF_RS08860 ed7e50c91708b2049d936d7875839757 130 PRINTS PR01853 Bacterial YajC preprotein translocase signature 26 46 4.2E-15 T 19-04-2016 IPR003849 Preprotein translocase YajC AMF_RS09455 84ba434300cadb9447ee2cb51f435c23 403 Pfam PF02687 FtsX-like permease family 263 396 9.1E-11 T 19-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 AMF_RS09455 84ba434300cadb9447ee2cb51f435c23 403 PANTHER PTHR30489:SF8 25 403 9.2E-55 T 19-04-2016 AMF_RS09455 84ba434300cadb9447ee2cb51f435c23 403 PANTHER PTHR30489 25 403 9.2E-55 T 19-04-2016 AMF_RS09455 84ba434300cadb9447ee2cb51f435c23 403 Pfam PF12704 MacB-like periplasmic core domain 25 232 4.5E-18 T 19-04-2016 IPR025857 MacB-like periplasmic core domain AMF_RS09455 84ba434300cadb9447ee2cb51f435c23 403 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 403 2.1E-116 T 19-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 Gene3D G3DSA:1.25.40.20 196 402 5.5E-9 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 Gene3D G3DSA:1.25.40.20 120 195 1.5E-11 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 PANTHER PTHR24123 687 880 8.4E-24 T 19-04-2016 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 PANTHER PTHR24123 538 569 8.4E-24 T 19-04-2016 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 PANTHER PTHR24123 121 225 8.4E-24 T 19-04-2016 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 PANTHER PTHR24123 433 490 8.4E-24 T 19-04-2016 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 PRINTS PR01415 Ankyrin repeat signature 709 723 6.7E-5 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 PRINTS PR01415 Ankyrin repeat signature 468 483 6.7E-5 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SUPERFAMILY SSF48403 117 283 7.15E-16 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SUPERFAMILY SSF48403 116 169 1.66E-33 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SUPERFAMILY SSF48403 465 499 1.66E-33 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 726 763 580.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 767 798 170.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 691 722 0.049 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 271 301 4300.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 356 385 4100.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 223 253 1400.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 846 875 200.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 802 832 690.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 191 219 310.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 467 496 1.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 151 185 3200.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SMART SM00248 118 147 0.0019 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SUPERFAMILY SSF48403 268 490 1.62E-10 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 Gene3D G3DSA:1.25.40.20 427 622 8.4E-43 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 Gene3D G3DSA:1.25.40.20 665 893 8.4E-43 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 SUPERFAMILY SSF48403 688 887 1.66E-33 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 Pfam PF12796 Ankyrin repeats (3 copies) 668 763 1.3E-7 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07690 6245eea44824a21409f9db5c7cb64b46 1388 Pfam PF12796 Ankyrin repeats (3 copies) 115 162 2.4E-6 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS05455 fedd4f4d7004fed434ee25c0a46dd4ae 273 PANTHER PTHR20275:SF7 51 260 3.8E-74 T 19-04-2016 AMF_RS05455 fedd4f4d7004fed434ee25c0a46dd4ae 273 Gene3D G3DSA:3.40.50.10330 41 128 3.0E-14 T 19-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMF_RS05455 fedd4f4d7004fed434ee25c0a46dd4ae 273 Pfam PF01513 ATP-NAD kinase 46 223 1.4E-17 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMF_RS05455 fedd4f4d7004fed434ee25c0a46dd4ae 273 PANTHER PTHR20275 51 260 3.8E-74 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMF_RS05455 fedd4f4d7004fed434ee25c0a46dd4ae 273 Hamap MF_00361 NAD kinase [nadK]. 15 273 19.482 T 19-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMF_RS05455 fedd4f4d7004fed434ee25c0a46dd4ae 273 Gene3D G3DSA:2.60.200.30 129 244 9.4E-28 T 19-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 AMF_RS05455 fedd4f4d7004fed434ee25c0a46dd4ae 273 SUPERFAMILY SSF111331 42 260 2.35E-51 T 19-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 PIRSF PIRSF001529 1 425 7.5E-150 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 SUPERFAMILY SSF55681 115 421 2.75E-88 T 19-04-2016 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 TIGRFAM TIGR00414 serS: serine--tRNA ligase 3 416 6.7E-144 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 2 106 1.1E-16 T 19-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 421 37.245 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 PANTHER PTHR11778:SF0 3 429 2.1E-169 T 19-04-2016 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 Gene3D G3DSA:3.30.930.10 104 418 9.2E-128 T 19-04-2016 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 PRINTS PR00981 Seryl-tRNA synthetase signature 348 364 1.0E-29 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 PRINTS PR00981 Seryl-tRNA synthetase signature 313 326 1.0E-29 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 PRINTS PR00981 Seryl-tRNA synthetase signature 273 286 1.0E-29 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 PRINTS PR00981 Seryl-tRNA synthetase signature 330 346 1.0E-29 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 PRINTS PR00981 Seryl-tRNA synthetase signature 261 273 1.0E-29 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 220 399 7.8E-31 T 19-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 PANTHER PTHR11778 3 429 2.1E-169 T 19-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 SUPERFAMILY SSF46589 2 111 1.1E-18 T 19-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 AMF_RS07855 f86b64939c0dfc557cfe307774be517c 429 Gene3D G3DSA:1.10.287.40 2 103 8.3E-14 T 19-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 AMF_RS09045 d49ac8244daafa242ec5229f7fafaf15 207 PANTHER PTHR21320:SF3 5 193 3.7E-60 T 19-04-2016 AMF_RS09045 d49ac8244daafa242ec5229f7fafaf15 207 Hamap MF_00155 Cytochrome c oxidase assembly protein CtaG [ctaG]. 3 182 33.972 T 19-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 AMF_RS09045 d49ac8244daafa242ec5229f7fafaf15 207 PANTHER PTHR21320 5 193 3.7E-60 T 19-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 AMF_RS09045 d49ac8244daafa242ec5229f7fafaf15 207 PIRSF PIRSF005413 1 193 2.0E-65 T 19-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 AMF_RS09045 d49ac8244daafa242ec5229f7fafaf15 207 SUPERFAMILY SSF110111 59 178 1.16E-43 T 19-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain AMF_RS09045 d49ac8244daafa242ec5229f7fafaf15 207 Gene3D G3DSA:2.60.370.10 56 189 3.8E-47 T 19-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain AMF_RS09045 d49ac8244daafa242ec5229f7fafaf15 207 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 29 174 2.1E-50 T 19-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 AMF_RS06780 7864a0561664444d1dbb6ee9f5a6ca08 227 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 5 212 32.797 T 19-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 AMF_RS06780 7864a0561664444d1dbb6ee9f5a6ca08 227 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 6 212 2.5E-49 T 19-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 AMF_RS06780 7864a0561664444d1dbb6ee9f5a6ca08 227 Pfam PF02666 Phosphatidylserine decarboxylase 39 208 1.0E-28 T 19-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 AMF_RS06780 7864a0561664444d1dbb6ee9f5a6ca08 227 PANTHER PTHR35809 3 215 2.0E-60 T 19-04-2016 AMF_RS08425 1d224fdbd7b8501734db257bc71831a7 119 SMART SM01374 1 119 4.3E-56 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMF_RS08425 1d224fdbd7b8501734db257bc71831a7 119 ProSitePatterns PS00049 Ribosomal protein L14 signature. 58 84 - T 19-04-2016 IPR019972 Ribosomal protein L14P, conserved site AMF_RS08425 1d224fdbd7b8501734db257bc71831a7 119 Gene3D G3DSA:2.40.150.20 1 119 1.8E-40 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMF_RS08425 1d224fdbd7b8501734db257bc71831a7 119 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 119 3.4E-41 T 19-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMF_RS08425 1d224fdbd7b8501734db257bc71831a7 119 Pfam PF00238 Ribosomal protein L14p/L23e 1 119 1.6E-40 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMF_RS08425 1d224fdbd7b8501734db257bc71831a7 119 PANTHER PTHR11761 1 119 1.5E-48 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMF_RS08425 1d224fdbd7b8501734db257bc71831a7 119 SUPERFAMILY SSF50193 1 118 9.03E-40 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMF_RS08425 1d224fdbd7b8501734db257bc71831a7 119 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 119 23.844 T 19-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMF_RS08425 1d224fdbd7b8501734db257bc71831a7 119 PANTHER PTHR11761:SF3 1 119 1.5E-48 T 19-04-2016 AMF_RS06535 327ceab63f773fe5e4fa206d9c11757f 483 SUPERFAMILY SSF56112 184 404 2.11E-32 T 19-04-2016 IPR011009 Protein kinase-like domain AMF_RS06535 327ceab63f773fe5e4fa206d9c11757f 483 SUPERFAMILY SSF56112 81 143 2.11E-32 T 19-04-2016 IPR011009 Protein kinase-like domain AMF_RS06535 327ceab63f773fe5e4fa206d9c11757f 483 Gene3D G3DSA:3.90.1200.10 224 295 1.4E-8 T 19-04-2016 AMF_RS06535 327ceab63f773fe5e4fa206d9c11757f 483 Pfam PF03109 ABC1 family 99 215 3.4E-28 T 19-04-2016 IPR004147 UbiB domain AMF_RS06535 327ceab63f773fe5e4fa206d9c11757f 483 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 33 410 3.3E-147 T 19-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 AMF_RS06535 327ceab63f773fe5e4fa206d9c11757f 483 PANTHER PTHR10566:SF79 11 404 6.3E-125 T 19-04-2016 AMF_RS06535 327ceab63f773fe5e4fa206d9c11757f 483 PANTHER PTHR10566 11 404 6.3E-125 T 19-04-2016 AMF_RS08930 de91d7f3f1c18ba22783102cb0506c11 322 SMART SM01400 1 129 1.7E-38 T 19-04-2016 AMF_RS08930 de91d7f3f1c18ba22783102cb0506c11 322 Pfam PF14572 Phosphoribosyl synthetase-associated domain 220 292 1.5E-15 T 19-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 AMF_RS08930 de91d7f3f1c18ba22783102cb0506c11 322 PANTHER PTHR10210:SF41 1 311 1.7E-84 T 19-04-2016 AMF_RS08930 de91d7f3f1c18ba22783102cb0506c11 322 SUPERFAMILY SSF53271 69 291 9.87E-38 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMF_RS08930 de91d7f3f1c18ba22783102cb0506c11 322 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 1 314 7.8E-73 T 19-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 AMF_RS08930 de91d7f3f1c18ba22783102cb0506c11 322 Gene3D G3DSA:3.40.50.2020 171 291 1.3E-36 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMF_RS08930 de91d7f3f1c18ba22783102cb0506c11 322 Gene3D G3DSA:3.40.50.2020 1 170 3.2E-43 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMF_RS08930 de91d7f3f1c18ba22783102cb0506c11 322 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 1 129 5.1E-34 T 19-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 AMF_RS08930 de91d7f3f1c18ba22783102cb0506c11 322 PANTHER PTHR10210 1 311 1.7E-84 T 19-04-2016 AMF_RS10010 036217a1c152feb39e9319fee4d89f97 278 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 180 214 2.5E-10 T 19-04-2016 IPR001451 Hexapeptide repeat AMF_RS10010 036217a1c152feb39e9319fee4d89f97 278 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 137 171 2.8E-6 T 19-04-2016 IPR001451 Hexapeptide repeat AMF_RS10010 036217a1c152feb39e9319fee4d89f97 278 SUPERFAMILY SSF51161 26 259 6.38E-61 T 19-04-2016 IPR011004 Trimeric LpxA-like AMF_RS10010 036217a1c152feb39e9319fee4d89f97 278 Gene3D G3DSA:1.10.166.10 25 71 6.1E-14 T 19-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 AMF_RS10010 036217a1c152feb39e9319fee4d89f97 278 PANTHER PTHR19136 18 277 2.8E-93 T 19-04-2016 AMF_RS10010 036217a1c152feb39e9319fee4d89f97 278 Gene3D G3DSA:2.160.10.10 93 259 9.0E-53 T 19-04-2016 AMF_RS10010 036217a1c152feb39e9319fee4d89f97 278 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 24 70 7.2E-11 T 19-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 AMF_RS10010 036217a1c152feb39e9319fee4d89f97 278 PANTHER PTHR19136:SF52 18 277 2.8E-93 T 19-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 SUPERFAMILY SSF52540 330 501 2.36E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Gene3D G3DSA:2.40.30.10 503 595 8.2E-20 T 19-04-2016 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 PANTHER PTHR23115 684 832 1.7E-176 T 19-04-2016 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 248 829 4.0E-197 T 19-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 PANTHER PTHR23115:SF184 316 659 1.7E-176 T 19-04-2016 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 PANTHER PTHR23115:SF184 684 832 1.7E-176 T 19-04-2016 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 PANTHER PTHR23115 316 659 1.7E-176 T 19-04-2016 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 SUPERFAMILY SSF52156 628 738 6.28E-32 T 19-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Gene3D G3DSA:3.40.50.300 331 490 5.8E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 25 829 14.914 T 19-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Gene3D G3DSA:3.40.50.10050 632 709 9.7E-23 T 19-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 334 486 2.9E-32 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Pfam PF11987 Translation-initiation factor 2 629 721 6.7E-32 T 19-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 SUPERFAMILY SSF50447 733 829 1.51E-25 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 SUPERFAMILY SSF50447 504 587 1.31E-22 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 ProSitePatterns PS01176 Initiation factor 2 signature. 782 804 - T 19-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Pfam PF00009 Elongation factor Tu GTP binding domain 336 491 1.8E-32 T 19-04-2016 AMF_RS07760 afcfdc87eb69edb72ecd5b1e1cf6c4db 832 Gene3D G3DSA:2.40.30.10 733 829 7.1E-26 T 19-04-2016 AMF_RS05250 d7f15b02a08a235617b61749f8ab5f46 89 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 79 1.2E-28 T 19-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05250 d7f15b02a08a235617b61749f8ab5f46 89 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 80 23.979 T 19-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05250 d7f15b02a08a235617b61749f8ab5f46 89 Pfam PF00886 Ribosomal protein S16 9 70 3.2E-25 T 19-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05250 d7f15b02a08a235617b61749f8ab5f46 89 Gene3D G3DSA:3.30.1320.10 3 79 7.7E-30 T 19-04-2016 IPR023803 Ribosomal protein S16 domain AMF_RS05250 d7f15b02a08a235617b61749f8ab5f46 89 PANTHER PTHR12919 2 79 4.7E-35 T 19-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05250 d7f15b02a08a235617b61749f8ab5f46 89 SUPERFAMILY SSF54565 3 79 9.55E-30 T 19-04-2016 IPR023803 Ribosomal protein S16 domain AMF_RS05770 70f3871da17e380eea721fccfd77b7e4 227 SUPERFAMILY SSF53474 11 215 1.04E-33 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMF_RS05770 70f3871da17e380eea721fccfd77b7e4 227 PANTHER PTHR16138 11 226 1.6E-68 T 19-04-2016 AMF_RS05770 70f3871da17e380eea721fccfd77b7e4 227 Gene3D G3DSA:3.40.50.1820 160 214 6.0E-31 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMF_RS05770 70f3871da17e380eea721fccfd77b7e4 227 Gene3D G3DSA:3.40.50.1820 9 116 6.0E-31 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMF_RS05770 70f3871da17e380eea721fccfd77b7e4 227 Pfam PF12146 Serine aminopeptidase, S33 12 138 1.0E-12 T 19-04-2016 IPR022742 Serine aminopeptidase, S33 AMF_RS10080 b26835ffd808fe0fae334bd92509333a 563 PANTHER PTHR16254:SF6 7 562 5.5E-173 T 19-04-2016 AMF_RS10080 b26835ffd808fe0fae334bd92509333a 563 PANTHER PTHR16254 7 562 5.5E-173 T 19-04-2016 AMF_RS10080 b26835ffd808fe0fae334bd92509333a 563 Gene3D G3DSA:3.40.50.720 402 534 4.1E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS10080 b26835ffd808fe0fae334bd92509333a 563 Pfam PF00999 Sodium/hydrogen exchanger family 11 374 2.0E-57 T 19-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMF_RS10080 b26835ffd808fe0fae334bd92509333a 563 SUPERFAMILY SSF51735 406 536 3.38E-28 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS10080 b26835ffd808fe0fae334bd92509333a 563 Pfam PF02254 TrkA-N domain 408 521 4.0E-20 T 19-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 1.3E-28 T 19-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 PIRSF PIRSF002158 5 276 2.8E-100 T 19-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 Gene3D G3DSA:2.30.30.30 122 195 4.6E-28 T 19-04-2016 IPR014722 Ribosomal protein L2 domain 2 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 269 1.3E-115 T 19-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 Gene3D G3DSA:2.40.50.140 1 114 3.6E-44 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 Gene3D G3DSA:4.10.950.10 196 270 8.7E-35 T 19-04-2016 IPR014726 Ribosomal protein L2, domain 3 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 SMART SM01383 42 118 5.4E-43 T 19-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 PANTHER PTHR13691 1 269 2.0E-127 T 19-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 PANTHER PTHR13691:SF5 1 269 2.0E-127 T 19-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 19-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 SUPERFAMILY SSF50249 3 123 2.81E-42 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 250 3.9E-54 T 19-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 277 44.668 T 19-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 SUPERFAMILY SSF50104 126 270 5.78E-59 T 19-04-2016 IPR008991 Translation protein SH3-like domain AMF_RS08460 529545b387bf20f03d1ab100ca2d8658 277 SMART SM01382 124 252 5.4E-85 T 19-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_RS07195 b9dac70d1c880fb42f596accbb5e4ce4 218 SUPERFAMILY SSF50447 73 156 1.34E-23 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS07195 b9dac70d1c880fb42f596accbb5e4ce4 218 SUPERFAMILY SSF52540 4 71 6.15E-10 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07195 b9dac70d1c880fb42f596accbb5e4ce4 218 Gene3D G3DSA:2.40.30.10 72 165 7.7E-21 T 19-04-2016 AMF_RS07195 b9dac70d1c880fb42f596accbb5e4ce4 218 Gene3D G3DSA:3.40.50.300 4 59 9.0E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07195 b9dac70d1c880fb42f596accbb5e4ce4 218 PANTHER PTHR23115:SF184 4 216 4.1E-60 T 19-04-2016 AMF_RS07195 b9dac70d1c880fb42f596accbb5e4ce4 218 PANTHER PTHR23115 4 216 4.1E-60 T 19-04-2016 AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 Gene3D G3DSA:3.30.565.10 8 213 3.6E-64 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 8 313 6.1E-77 T 19-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 6 629 24.764 T 19-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 SUPERFAMILY SSF54211 197 333 1.52E-31 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 217 332 9.0E-37 T 19-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 97 103 - T 19-04-2016 IPR014762 DNA mismatch repair, conserved site AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 PANTHER PTHR10073 8 632 1.6E-132 T 19-04-2016 AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 SMART SM00853 445 589 4.5E-40 T 19-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 SUPERFAMILY SSF118116 441 631 1.44E-46 T 19-04-2016 AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 SUPERFAMILY SSF55874 8 216 1.7E-49 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 134 1.6E-12 T 19-04-2016 AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 SMART SM01340 213 333 4.0E-47 T 19-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 Pfam PF08676 MutL C terminal dimerisation domain 441 589 4.7E-38 T 19-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMF_RS06300 40e68b3115467f0c85e1ffa43109f392 632 Gene3D G3DSA:3.30.230.10 220 332 8.0E-34 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 38 578 1.8E-101 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 Gene3D G3DSA:1.10.730.10 462 578 1.1E-28 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 PRINTS PR01038 Arginyl-tRNA synthetase signature 324 345 7.0E-24 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 PRINTS PR01038 Arginyl-tRNA synthetase signature 167 180 7.0E-24 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 PRINTS PR01038 Arginyl-tRNA synthetase signature 143 159 7.0E-24 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 PRINTS PR01038 Arginyl-tRNA synthetase signature 128 143 7.0E-24 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 SUPERFAMILY SSF55190 7 119 4.58E-15 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 Gene3D G3DSA:3.30.1360.70 34 118 1.8E-18 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 138 147 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 PANTHER PTHR11956 7 578 7.1E-158 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 Hamap MF_00123 Arginine--tRNA ligase [argS]. 29 578 22.279 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 SMART SM01016 12 99 3.9E-17 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 33 98 4.3E-12 T 19-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 SUPERFAMILY SSF47323 450 578 2.81E-30 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 SMART SM00836 455 578 1.9E-46 T 19-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 Pfam PF05746 DALR anticodon binding domain 455 578 5.0E-23 T 19-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 PANTHER PTHR11956:SF6 7 578 7.1E-158 T 19-04-2016 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 Gene3D G3DSA:3.40.50.620 122 461 1.1E-89 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 Pfam PF00750 tRNA synthetases class I (R) 120 439 1.1E-14 T 19-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 AMF_RS07615 a2b99b9bf695d256f39e700b62470fce 579 SUPERFAMILY SSF52374 122 466 1.04E-82 T 19-04-2016 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 SMART SM00465 30 111 1.3E-19 T 19-04-2016 IPR000305 GIY-YIG nuclease superfamily AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 SUPERFAMILY SSF82771 30 113 1.01E-19 T 19-04-2016 IPR000305 GIY-YIG nuclease superfamily AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 Pfam PF02151 UvrB/uvrC motif 218 251 5.2E-6 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 PANTHER PTHR30562 16 606 2.5E-193 T 19-04-2016 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 PANTHER PTHR30562:SF1 16 606 2.5E-193 T 19-04-2016 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 SMART SM00278 554 573 220.0 T 19-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 SMART SM00278 586 605 0.14 T 19-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 Gene3D G3DSA:4.10.860.10 195 254 4.2E-13 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 SUPERFAMILY SSF47781 519 608 2.45E-18 T 19-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 Gene3D G3DSA:1.10.150.20 555 607 4.5E-20 T 19-04-2016 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 SUPERFAMILY SSF46600 205 254 1.06E-9 T 19-04-2016 IPR001943 UVR domain GO:0005515 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 21 586 9.4E-145 T 19-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 Hamap MF_00203 UvrABC system protein C [uvrC]. 16 605 24.606 T 19-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 392 540 8.1E-46 T 19-04-2016 IPR001162 UvrC family homology region AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 Gene3D G3DSA:3.40.1440.10 30 108 7.4E-7 T 19-04-2016 IPR027299 GIY-YIG domain AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 Pfam PF14520 Helix-hairpin-helix domain 556 607 2.4E-9 T 19-04-2016 AMF_RS06485 8cca80bc13f4862067a2b55f7f857861 613 Pfam PF01541 GIY-YIG catalytic domain 32 106 2.4E-8 T 19-04-2016 IPR000305 GIY-YIG nuclease superfamily AMF_RS08790 e8f8731dfcfb955bf6c59395587aef4b 186 Pfam PF01617 Surface antigen 1 186 1.8E-19 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS06090 3c674f381637e42d64b6edea5298d6c2 206 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 2 206 34.759 T 19-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMF_RS06090 3c674f381637e42d64b6edea5298d6c2 206 PANTHER PTHR10851:SF0 9 206 3.0E-75 T 19-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMF_RS06090 3c674f381637e42d64b6edea5298d6c2 206 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 34 111 1.3E-20 T 19-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMF_RS06090 3c674f381637e42d64b6edea5298d6c2 206 Gene3D G3DSA:2.30.110.10 10 206 7.1E-68 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMF_RS06090 3c674f381637e42d64b6edea5298d6c2 206 SUPERFAMILY SSF50475 11 206 6.55E-56 T 19-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 AMF_RS06090 3c674f381637e42d64b6edea5298d6c2 206 PANTHER PTHR10851 9 206 3.0E-75 T 19-04-2016 AMF_RS06090 3c674f381637e42d64b6edea5298d6c2 206 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 165 206 1.7E-13 T 19-04-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMF_RS06090 3c674f381637e42d64b6edea5298d6c2 206 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 175 188 - T 19-04-2016 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMF_RS06090 3c674f381637e42d64b6edea5298d6c2 206 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 9 206 5.8E-65 T 19-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMF_RS06090 3c674f381637e42d64b6edea5298d6c2 206 PIRSF PIRSF000190 6 206 4.5E-66 T 19-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 AMF_RS07480 7ad0df72362cd33f7e85594ee4b5687c 189 Pfam PF02441 Flavoprotein 3 130 6.0E-30 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMF_RS07480 7ad0df72362cd33f7e85594ee4b5687c 189 PANTHER PTHR30108 1 188 4.7E-88 T 19-04-2016 AMF_RS07480 7ad0df72362cd33f7e85594ee4b5687c 189 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 4 186 1.8E-66 T 19-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 AMF_RS07480 7ad0df72362cd33f7e85594ee4b5687c 189 Gene3D G3DSA:3.40.50.1950 3 187 1.5E-70 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMF_RS07480 7ad0df72362cd33f7e85594ee4b5687c 189 SUPERFAMILY SSF52507 3 185 9.81E-59 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMF_RS07480 7ad0df72362cd33f7e85594ee4b5687c 189 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 3 188 35.06 T 19-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 AMF_RS07480 7ad0df72362cd33f7e85594ee4b5687c 189 PANTHER PTHR30108:SF10 1 188 4.7E-88 T 19-04-2016 AMF_RS08020 4594243bbb9c328d4e68d3a6002e331c 147 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 2 147 33.405 T 19-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 AMF_RS08020 4594243bbb9c328d4e68d3a6002e331c 147 TIGRFAM TIGR00576 dut: dUTP diphosphatase 14 146 2.7E-53 T 19-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 AMF_RS08020 4594243bbb9c328d4e68d3a6002e331c 147 Gene3D G3DSA:2.70.40.10 14 146 7.6E-54 T 19-04-2016 IPR029054 dUTPase-like AMF_RS08020 4594243bbb9c328d4e68d3a6002e331c 147 Pfam PF00692 dUTPase 16 146 1.9E-31 T 19-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 AMF_RS08020 4594243bbb9c328d4e68d3a6002e331c 147 SUPERFAMILY SSF51283 4 146 4.32E-52 T 19-04-2016 IPR029054 dUTPase-like AMF_RS08020 4594243bbb9c328d4e68d3a6002e331c 147 PANTHER PTHR11241 4 147 9.3E-51 T 19-04-2016 AMF_RS07015 a71b5965e39fd480db40cbdecbd5015a 93 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 89 2.0E-40 T 19-04-2016 AMF_RS07015 a71b5965e39fd480db40cbdecbd5015a 93 Pfam PF00312 Ribosomal protein S15 8 89 7.6E-30 T 19-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07015 a71b5965e39fd480db40cbdecbd5015a 93 PANTHER PTHR23321 1 92 4.9E-31 T 19-04-2016 AMF_RS07015 a71b5965e39fd480db40cbdecbd5015a 93 SUPERFAMILY SSF47060 3 90 2.65E-28 T 19-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 AMF_RS07015 a71b5965e39fd480db40cbdecbd5015a 93 SMART SM01387 8 89 4.8E-38 T 19-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07015 a71b5965e39fd480db40cbdecbd5015a 93 Gene3D G3DSA:1.10.287.10 3 90 1.4E-30 T 19-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 AMF_RS07015 a71b5965e39fd480db40cbdecbd5015a 93 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 3.8E-31 T 19-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 AMF_RS07015 a71b5965e39fd480db40cbdecbd5015a 93 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 90 19.176 T 19-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 SUPERFAMILY SSF47005 150 194 1.24E-10 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 SUPERFAMILY SSF52777 207 432 1.78E-81 T 19-04-2016 AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 Pfam PF00364 Biotin-requiring enzyme 5 77 6.6E-16 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 SUPERFAMILY SSF51230 2 91 7.2E-24 T 19-04-2016 IPR011053 Single hybrid motif AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 PANTHER PTHR23151 4 432 1.2E-182 T 19-04-2016 AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 Gene3D G3DSA:4.10.320.10 151 197 9.0E-16 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 208 432 8.1E-85 T 19-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 Gene3D G3DSA:3.30.559.10 203 432 3.7E-88 T 19-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 Pfam PF02817 e3 binding domain 155 190 1.1E-12 T 19-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 PANTHER PTHR23151:SF9 4 432 1.2E-182 T 19-04-2016 AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 Gene3D G3DSA:2.40.50.100 2 90 5.5E-29 T 19-04-2016 AMF_RS09485 e38b4c1d35c880e42a8ed2f7655d72c3 433 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 5 433 1.0E-143 T 19-04-2016 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 AMF_RS06015 a667a60c31c96b63b825051cc00dda42 163 PANTHER PTHR11560 13 158 2.8E-17 T 19-04-2016 AMF_RS06015 a667a60c31c96b63b825051cc00dda42 163 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 23 142 0.002 T 19-04-2016 AMF_RS06015 a667a60c31c96b63b825051cc00dda42 163 SUPERFAMILY SSF160369 3 161 8.11E-30 T 19-04-2016 AMF_RS06015 a667a60c31c96b63b825051cc00dda42 163 Pfam PF00466 Ribosomal protein L10 3 98 1.4E-15 T 19-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 Gene3D G3DSA:3.30.420.40 7 161 1.5E-41 T 19-04-2016 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 PANTHER PTHR11735 7 339 3.3E-135 T 19-04-2016 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 PANTHER PTHR11735:SF6 7 339 3.3E-135 T 19-04-2016 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 99 118 2.7E-46 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 156 177 2.7E-46 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 78 98 2.7E-46 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 8 21 2.7E-46 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 133 145 2.7E-46 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 271 280 2.7E-46 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 SUPERFAMILY SSF53067 7 123 1.2E-28 T 19-04-2016 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 5 339 58.519 T 19-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 7 321 2.9E-121 T 19-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 8 314 2.3E-97 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 SUPERFAMILY SSF53067 104 317 2.1E-37 T 19-04-2016 AMF_RS07165 74bd2f0c911e6c84bf396394d1acde78 341 Pfam PF00814 Glycoprotease family 27 315 2.9E-91 T 19-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS08775 b615e3eb33632e8ab0002c8078fefcfa 316 Gene3D G3DSA:1.10.443.10 125 299 3.6E-49 T 19-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMF_RS08775 b615e3eb33632e8ab0002c8078fefcfa 316 Pfam PF00589 Phage integrase family 124 295 8.2E-37 T 19-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMF_RS08775 b615e3eb33632e8ab0002c8078fefcfa 316 SUPERFAMILY SSF56349 14 299 1.12E-48 T 19-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMF_RS08775 b615e3eb33632e8ab0002c8078fefcfa 316 PANTHER PTHR30349 13 311 1.2E-72 T 19-04-2016 AMF_RS08775 b615e3eb33632e8ab0002c8078fefcfa 316 PANTHER PTHR30349:SF5 13 311 1.2E-72 T 19-04-2016 AMF_RS08775 b615e3eb33632e8ab0002c8078fefcfa 316 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 10 309 27.353 T 19-04-2016 IPR023009 Tyrosine recombinase XerC/XerD AMF_RS08775 b615e3eb33632e8ab0002c8078fefcfa 316 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 15 100 5.0E-13 T 19-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMF_RS08775 b615e3eb33632e8ab0002c8078fefcfa 316 Gene3D G3DSA:1.10.150.130 12 108 1.1E-20 T 19-04-2016 IPR023109 Integrase/recombinase, N-terminal AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 83 94 - T 19-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 PRINTS PR00060 Ribosomal protein L16 signature 59 88 2.1E-33 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 PRINTS PR00060 Ribosomal protein L16 signature 43 54 2.1E-33 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 PRINTS PR00060 Ribosomal protein L16 signature 89 118 2.1E-33 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 PRINTS PR00060 Ribosomal protein L16 signature 25 37 2.1E-33 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 SUPERFAMILY SSF54686 3 134 1.24E-50 T 19-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 2 135 33.624 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 Pfam PF00252 Ribosomal protein L16p/L10e 5 131 3.8E-44 T 19-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 Gene3D G3DSA:3.90.1170.10 24 134 5.4E-47 T 19-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 PANTHER PTHR12220 4 133 7.0E-59 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMF_RS08440 acd9bda6bf1adeddd479b86c4df9f81a 138 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 4 128 2.9E-51 T 19-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 AMF_RS08575 556154664d43062a6b9b34146a0fa175 324 Pfam PF00107 Zinc-binding dehydrogenase 152 260 8.9E-20 T 19-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMF_RS08575 556154664d43062a6b9b34146a0fa175 324 SUPERFAMILY SSF51735 112 267 1.64E-35 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08575 556154664d43062a6b9b34146a0fa175 324 Gene3D G3DSA:3.40.50.720 147 256 1.9E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08575 556154664d43062a6b9b34146a0fa175 324 Gene3D G3DSA:3.90.180.10 2 146 2.6E-36 T 19-04-2016 IPR011032 GroES-like AMF_RS08575 556154664d43062a6b9b34146a0fa175 324 PANTHER PTHR11695 16 324 3.0E-87 T 19-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 AMF_RS08575 556154664d43062a6b9b34146a0fa175 324 SMART SM00829 11 322 1.9E-13 T 19-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMF_RS08575 556154664d43062a6b9b34146a0fa175 324 SUPERFAMILY SSF50129 3 145 1.51E-33 T 19-04-2016 IPR011032 GroES-like AMF_RS08575 556154664d43062a6b9b34146a0fa175 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 87 2.6E-10 T 19-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMF_RS08575 556154664d43062a6b9b34146a0fa175 324 PANTHER PTHR11695:SF605 16 324 3.0E-87 T 19-04-2016 AMF_RS05280 8b6614f740f42e12f3206b1b7dabf7bf 205 Pfam PF06242 Protein of unknown function (DUF1013) 45 184 1.2E-59 T 19-04-2016 IPR010421 Protein of unknown function DUF1013 AMF_RS09185 e2889b5ff109965255253a2e726812d4 450 Gene3D G3DSA:1.20.1090.10 203 328 6.6E-50 T 19-04-2016 AMF_RS09185 e2889b5ff109965255253a2e726812d4 450 Gene3D G3DSA:1.20.1090.10 396 446 6.6E-50 T 19-04-2016 AMF_RS09185 e2889b5ff109965255253a2e726812d4 450 PANTHER PTHR11496 65 325 6.6E-35 T 19-04-2016 AMF_RS09185 e2889b5ff109965255253a2e726812d4 450 Gene3D G3DSA:3.40.50.1970 61 202 3.2E-31 T 19-04-2016 AMF_RS09185 e2889b5ff109965255253a2e726812d4 450 PANTHER PTHR11496:SF61 65 325 6.6E-35 T 19-04-2016 AMF_RS09185 e2889b5ff109965255253a2e726812d4 450 SUPERFAMILY SSF56796 60 343 5.36E-53 T 19-04-2016 AMF_RS09185 e2889b5ff109965255253a2e726812d4 450 Pfam PF13685 Iron-containing alcohol dehydrogenase 65 315 1.4E-50 T 19-04-2016 IPR032837 Glycerol-1-phosphate dehydrogenase KEGG: 00564+1.1.1.261|KEGG: 00630+1.1.1.26|MetaCyc: PWY-6349|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00940 AMF_RS05390 67fa8c98b0ed73e681543c2ba07b4eda 282 Gene3D G3DSA:2.40.160.20 96 281 4.7E-28 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05390 67fa8c98b0ed73e681543c2ba07b4eda 282 Gene3D G3DSA:2.40.160.20 45 62 4.7E-28 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05390 67fa8c98b0ed73e681543c2ba07b4eda 282 Pfam PF01617 Surface antigen 43 281 7.0E-90 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS05390 67fa8c98b0ed73e681543c2ba07b4eda 282 SUPERFAMILY SSF56925 104 135 1.57E-22 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05390 67fa8c98b0ed73e681543c2ba07b4eda 282 SUPERFAMILY SSF56925 166 281 1.57E-22 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05390 67fa8c98b0ed73e681543c2ba07b4eda 282 SUPERFAMILY SSF56925 45 63 1.57E-22 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 20.779 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 19-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 5.5E-31 T 19-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 PANTHER PTHR11880 1 92 2.4E-30 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 SUPERFAMILY SSF54570 2 84 7.85E-28 T 19-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 Gene3D G3DSA:3.30.860.10 1 91 9.7E-32 T 19-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 PIRSF PIRSF002144 1 92 4.4E-28 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.4E-15 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.4E-15 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.4E-15 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 PANTHER PTHR11880:SF8 1 92 2.4E-30 T 19-04-2016 AMF_RS08455 9d9bf35369987610d6b0f0fcbd647a40 93 Pfam PF00203 Ribosomal protein S19 3 83 3.2E-27 T 19-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 AMF_RS09770 34c7aab85464bbeab27ad7160666af33 174 PANTHER PTHR13939:SF0 1 167 2.0E-31 T 19-04-2016 AMF_RS09770 34c7aab85464bbeab27ad7160666af33 174 Pfam PF02464 Competence-damaged protein 12 167 2.1E-38 T 19-04-2016 IPR008136 CinA, C-terminal AMF_RS09770 34c7aab85464bbeab27ad7160666af33 174 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 15 167 6.1E-28 T 19-04-2016 IPR008136 CinA, C-terminal AMF_RS09770 34c7aab85464bbeab27ad7160666af33 174 PANTHER PTHR13939 1 167 2.0E-31 T 19-04-2016 AMF_RS09770 34c7aab85464bbeab27ad7160666af33 174 Gene3D G3DSA:3.90.950.20 5 168 1.9E-40 T 19-04-2016 IPR008136 CinA, C-terminal AMF_RS09770 34c7aab85464bbeab27ad7160666af33 174 SUPERFAMILY SSF142433 6 168 3.66E-37 T 19-04-2016 IPR008136 CinA, C-terminal AMF_RS05735 20b042823a31a5bdc9770c63aa0fbcfc 370 PANTHER PTHR10587 141 219 5.8E-17 T 19-04-2016 AMF_RS05735 20b042823a31a5bdc9770c63aa0fbcfc 370 PANTHER PTHR10587 236 331 5.8E-17 T 19-04-2016 AMF_RS05735 20b042823a31a5bdc9770c63aa0fbcfc 370 Gene3D G3DSA:3.20.20.370 115 327 1.5E-32 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMF_RS05735 20b042823a31a5bdc9770c63aa0fbcfc 370 SUPERFAMILY SSF88713 115 326 1.56E-33 T 19-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMF_RS05735 20b042823a31a5bdc9770c63aa0fbcfc 370 Pfam PF01522 Polysaccharide deacetylase 117 217 1.1E-13 T 19-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 PRINTS PR00148 Enolase signature 321 332 2.3E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 PRINTS PR00148 Enolase signature 49 63 2.3E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 PRINTS PR00148 Enolase signature 373 390 2.3E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 PRINTS PR00148 Enolase signature 344 358 2.3E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 PRINTS PR00148 Enolase signature 119 135 2.3E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 PRINTS PR00148 Enolase signature 173 186 2.3E-43 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 SUPERFAMILY SSF54826 15 148 7.41E-51 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 Gene3D G3DSA:3.20.20.120 140 427 9.7E-120 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 154 425 2.8E-115 T 19-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 SMART SM01193 16 146 9.3E-81 T 19-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 SUPERFAMILY SSF51604 152 429 1.08E-114 T 19-04-2016 IPR029065 Enolase C-terminal domain-like AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 SMART SM01192 151 429 9.8E-186 T 19-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 PANTHER PTHR11902 16 427 7.6E-217 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 Pfam PF03952 Enolase, N-terminal domain 16 146 2.7E-54 T 19-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 Gene3D G3DSA:3.30.390.10 15 137 2.9E-50 T 19-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 ProSitePatterns PS00164 Enolase signature. 344 357 - T 19-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 PIRSF PIRSF001400 12 430 6.8E-180 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 Hamap MF_00318 Enolase [eno]. 14 421 42.686 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS07325 66aa7aa5aa2d4b197270e019a6725a0c 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 16 427 4.4E-188 T 19-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS05880 de01510362e1fa629d92226dd2982712 375 SUPERFAMILY SSF161098 118 360 1.31E-32 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS05880 de01510362e1fa629d92226dd2982712 375 Gene3D G3DSA:1.10.3720.10 81 368 8.7E-39 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS05880 de01510362e1fa629d92226dd2982712 375 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 160 368 1.6E-18 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS05880 de01510362e1fa629d92226dd2982712 375 PANTHER PTHR30425 79 375 9.8E-90 T 19-04-2016 AMF_RS05880 de01510362e1fa629d92226dd2982712 375 PANTHER PTHR30425:SF3 79 375 9.8E-90 T 19-04-2016 AMF_RS05880 de01510362e1fa629d92226dd2982712 375 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 79 368 1.1E-76 T 19-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AMF_RS09075 bc72eed947d97d441e87868c00153f08 442 Pfam PF05193 Peptidase M16 inactive domain 191 372 6.3E-20 T 19-04-2016 IPR007863 Peptidase M16, C-terminal AMF_RS09075 bc72eed947d97d441e87868c00153f08 442 SUPERFAMILY SSF63411 265 432 2.17E-17 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_RS09075 bc72eed947d97d441e87868c00153f08 442 Gene3D G3DSA:3.30.830.10 26 238 8.6E-53 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMF_RS09075 bc72eed947d97d441e87868c00153f08 442 PANTHER PTHR11851:SF136 24 426 4.0E-74 T 19-04-2016 AMF_RS09075 bc72eed947d97d441e87868c00153f08 442 Gene3D G3DSA:3.30.830.10 279 432 1.5E-10 T 19-04-2016 IPR011237 Peptidase M16 domain GO:0046872 AMF_RS09075 bc72eed947d97d441e87868c00153f08 442 PANTHER PTHR11851 24 426 4.0E-74 T 19-04-2016 AMF_RS09075 bc72eed947d97d441e87868c00153f08 442 Pfam PF00675 Insulinase (Peptidase family M16) 47 177 6.6E-24 T 19-04-2016 IPR011765 Peptidase M16, N-terminal AMF_RS09075 bc72eed947d97d441e87868c00153f08 442 SUPERFAMILY SSF63411 25 228 7.16E-55 T 19-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMF_RS09075 bc72eed947d97d441e87868c00153f08 442 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 58 81 - T 19-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMF_RS08345 6f0d2df8380e2142945bdc0c75b8f94c 748 PANTHER PTHR30619:SF2 38 552 4.5E-54 T 19-04-2016 AMF_RS08345 6f0d2df8380e2142945bdc0c75b8f94c 748 PANTHER PTHR30619 38 552 4.5E-54 T 19-04-2016 AMF_RS08345 6f0d2df8380e2142945bdc0c75b8f94c 748 Pfam PF03772 Competence protein 254 526 6.2E-54 T 19-04-2016 IPR004477 ComEC/Rec2-related protein AMF_RS08345 6f0d2df8380e2142945bdc0c75b8f94c 748 Pfam PF13567 Domain of unknown function (DUF4131) 46 211 1.5E-9 T 19-04-2016 IPR025405 Domain of unknown function DUF4131 AMF_RS08345 6f0d2df8380e2142945bdc0c75b8f94c 748 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 276 459 1.9E-26 T 19-04-2016 IPR004477 ComEC/Rec2-related protein AMF_RS05610 9633a69dbd842f352a62aca472fc1912 278 PANTHER PTHR10366 3 272 2.2E-55 T 19-04-2016 AMF_RS05610 9633a69dbd842f352a62aca472fc1912 278 PANTHER PTHR10366:SF430 3 272 2.2E-55 T 19-04-2016 AMF_RS05610 9633a69dbd842f352a62aca472fc1912 278 Gene3D G3DSA:3.40.50.720 8 258 1.3E-14 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS05610 9633a69dbd842f352a62aca472fc1912 278 SUPERFAMILY SSF51735 10 271 1.75E-25 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS08285 6e970c265dfb801bf235e99993fb4078 420 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 11 390 2.7E-119 T 19-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 AMF_RS08285 6e970c265dfb801bf235e99993fb4078 420 PANTHER PTHR21148 123 398 2.2E-127 T 19-04-2016 AMF_RS08285 6e970c265dfb801bf235e99993fb4078 420 PANTHER PTHR21148 3 105 2.2E-127 T 19-04-2016 AMF_RS08285 6e970c265dfb801bf235e99993fb4078 420 SUPERFAMILY SSF51713 9 397 6.93E-128 T 19-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 AMF_RS08285 6e970c265dfb801bf235e99993fb4078 420 Gene3D G3DSA:3.20.20.105 6 397 2.1E-139 T 19-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 AMF_RS08285 6e970c265dfb801bf235e99993fb4078 420 Pfam PF01702 Queuine tRNA-ribosyltransferase 151 392 2.9E-77 T 19-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 AMF_RS08285 6e970c265dfb801bf235e99993fb4078 420 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 9 392 46.039 T 19-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 AMF_RS08285 6e970c265dfb801bf235e99993fb4078 420 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 12 394 3.8E-121 T 19-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 AMF_RS08285 6e970c265dfb801bf235e99993fb4078 420 PANTHER PTHR21148:SF26 123 398 2.2E-127 T 19-04-2016 AMF_RS08285 6e970c265dfb801bf235e99993fb4078 420 PANTHER PTHR21148:SF26 3 105 2.2E-127 T 19-04-2016 AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 SUPERFAMILY SSF69304 161 437 5.62E-53 T 19-04-2016 AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 Pfam PF04052 TolB amino-terminal domain 28 134 4.0E-19 T 19-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 Gene3D G3DSA:3.40.50.10070 27 156 3.4E-32 T 19-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 SUPERFAMILY SSF52964 32 166 1.09E-26 T 19-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 Hamap MF_00671 Protein TolB [tolB]. 3 435 27.663 T 19-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 PANTHER PTHR36842 10 437 2.2E-38 T 19-04-2016 AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 22 436 2.6E-115 T 19-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 Pfam PF07676 WD40-like Beta Propeller Repeat 249 275 0.28 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 Pfam PF07676 WD40-like Beta Propeller Repeat 285 320 2.8E-8 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 Pfam PF07676 WD40-like Beta Propeller Repeat 382 396 0.025 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 Pfam PF07676 WD40-like Beta Propeller Repeat 329 357 3.3E-5 T 19-04-2016 IPR011659 WD40-like Beta Propeller AMF_RS05950 71aa9d8b3d2d5931da591d9496f4f10d 441 Gene3D G3DSA:2.130.10.10 157 437 1.4E-70 T 19-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AMF_RS06970 a0a94f7336e707ca23d0930f7dc66461 395 PANTHER PTHR11751:SF306 14 387 1.9E-151 T 19-04-2016 AMF_RS06970 a0a94f7336e707ca23d0930f7dc66461 395 Gene3D G3DSA:3.40.640.10 45 271 1.7E-72 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMF_RS06970 a0a94f7336e707ca23d0930f7dc66461 395 SUPERFAMILY SSF53383 1 391 3.19E-108 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMF_RS06970 a0a94f7336e707ca23d0930f7dc66461 395 Gene3D G3DSA:3.90.1150.10 272 393 1.6E-35 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS06970 a0a94f7336e707ca23d0930f7dc66461 395 PANTHER PTHR11751 14 387 1.9E-151 T 19-04-2016 AMF_RS06970 a0a94f7336e707ca23d0930f7dc66461 395 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 233 246 - T 19-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 AMF_RS06970 a0a94f7336e707ca23d0930f7dc66461 395 Pfam PF00155 Aminotransferase class I and II 32 387 1.8E-73 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 Pfam PF00448 SRP54-type protein, GTPase domain 103 303 8.6E-74 T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 Gene3D G3DSA:1.20.120.140 52 114 1.1E-16 T 19-04-2016 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 PANTHER PTHR11564 1 304 1.1E-106 T 19-04-2016 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 35 302 2.3E-92 T 19-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 SUPERFAMILY SSF52540 101 303 1.31E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 Gene3D G3DSA:1.20.120.140 5 51 2.4E-9 T 19-04-2016 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 35 304 52.693 T 19-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 SMART SM00382 102 239 5.1E-10 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 SMART SM00963 11 90 0.0026 T 19-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 SMART SM00962 103 304 9.6E-111 T 19-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 PANTHER PTHR11564:SF16 1 304 1.1E-106 T 19-04-2016 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 SUPERFAMILY SSF47364 6 70 1.79E-9 T 19-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 AMF_RS09275 e61ba53a7366aa4aa9028bd029387394 305 Gene3D G3DSA:3.40.50.300 115 304 2.6E-76 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09265 249efee9f1ead48af167d14e46e57ea4 137 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 91 126 1.3E-10 T 19-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AMF_RS09265 249efee9f1ead48af167d14e46e57ea4 137 PANTHER PTHR33823:SF2 9 129 4.6E-29 T 19-04-2016 AMF_RS09265 249efee9f1ead48af167d14e46e57ea4 137 SUPERFAMILY SSF109635 6 91 1.44E-23 T 19-04-2016 AMF_RS09265 249efee9f1ead48af167d14e46e57ea4 137 SUPERFAMILY SSF57716 93 131 6.27E-9 T 19-04-2016 AMF_RS09265 249efee9f1ead48af167d14e46e57ea4 137 PANTHER PTHR33823 9 129 4.6E-29 T 19-04-2016 AMF_RS09915 743387aa67af737e0845fc5f548e9152 311 PANTHER PTHR30573 6 309 2.8E-124 T 19-04-2016 AMF_RS09915 743387aa67af737e0845fc5f548e9152 311 Pfam PF02445 Quinolinate synthetase A protein 11 308 3.2E-112 T 19-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 AMF_RS09915 743387aa67af737e0845fc5f548e9152 311 Hamap MF_00568 Quinolinate synthase A [nadA]. 6 310 42.438 T 19-04-2016 IPR023066 Quinolinate synthase A, type 2 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 AMF_RS09915 743387aa67af737e0845fc5f548e9152 311 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 7 310 3.3E-106 T 19-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 AMF_RS09915 743387aa67af737e0845fc5f548e9152 311 SUPERFAMILY SSF142754 7 309 6.54E-111 T 19-04-2016 AMF_RS05690 d5adea39ef27ff0d6784faa8aed8abeb 573 Pfam PF00664 ABC transporter transmembrane region 12 276 4.5E-35 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMF_RS05690 d5adea39ef27ff0d6784faa8aed8abeb 573 Gene3D G3DSA:1.20.1560.10 2 306 4.9E-52 T 19-04-2016 AMF_RS05690 d5adea39ef27ff0d6784faa8aed8abeb 573 SMART SM00382 355 542 4.0E-14 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS05690 d5adea39ef27ff0d6784faa8aed8abeb 573 SUPERFAMILY SSF90123 3 306 5.89E-53 T 19-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AMF_RS05690 d5adea39ef27ff0d6784faa8aed8abeb 573 SUPERFAMILY SSF52540 319 568 3.51E-87 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05690 d5adea39ef27ff0d6784faa8aed8abeb 573 Gene3D G3DSA:3.40.50.300 327 561 1.7E-81 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05690 d5adea39ef27ff0d6784faa8aed8abeb 573 Pfam PF00005 ABC transporter 346 496 3.5E-33 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_RS05690 d5adea39ef27ff0d6784faa8aed8abeb 573 PANTHER PTHR24221 1 572 3.4E-187 T 19-04-2016 AMF_RS10085 acbb5fded312cf5e50213516656f93b2 187 PANTHER PTHR10681:SF91 1 187 3.9E-39 T 19-04-2016 AMF_RS10085 acbb5fded312cf5e50213516656f93b2 187 SUPERFAMILY SSF52833 5 186 3.75E-42 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS10085 acbb5fded312cf5e50213516656f93b2 187 PANTHER PTHR10681 1 187 3.9E-39 T 19-04-2016 AMF_RS10085 acbb5fded312cf5e50213516656f93b2 187 Gene3D G3DSA:3.40.30.10 13 141 3.6E-18 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS10085 acbb5fded312cf5e50213516656f93b2 187 Pfam PF00578 AhpC/TSA family 14 132 1.9E-13 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMF_RS05460 fba34718f792a544df06bdeb7bc59f65 73 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 72 1.8E-12 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05460 fba34718f792a544df06bdeb7bc59f65 73 Pfam PF01197 Ribosomal protein L31 1 71 2.6E-15 T 19-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05460 fba34718f792a544df06bdeb7bc59f65 73 SUPERFAMILY SSF143800 1 72 7.06E-13 T 19-04-2016 AMF_RS07335 cfae58e420dea28c2cc4abd774ed1273 71 PANTHER PTHR11846 10 71 2.6E-22 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMF_RS07335 cfae58e420dea28c2cc4abd774ed1273 71 Gene3D G3DSA:3.90.170.10 8 67 8.5E-19 T 19-04-2016 AMF_RS07335 cfae58e420dea28c2cc4abd774ed1273 71 SUPERFAMILY SSF52540 7 68 3.61E-17 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07335 cfae58e420dea28c2cc4abd774ed1273 71 Pfam PF00709 Adenylosuccinate synthetase 10 67 1.1E-15 T 19-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 AMF_RS09780 34d48b61a414c022ab294a9a0cb9ebfd 177 PANTHER PTHR10938 1 164 5.1E-52 T 19-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 AMF_RS09780 34d48b61a414c022ab294a9a0cb9ebfd 177 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 8 166 2.5E-44 T 19-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 AMF_RS09780 34d48b61a414c022ab294a9a0cb9ebfd 177 Gene3D G3DSA:3.10.20.80 3 73 5.3E-25 T 19-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 AMF_RS09780 34d48b61a414c022ab294a9a0cb9ebfd 177 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 8 72 3.6E-22 T 19-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 AMF_RS09780 34d48b61a414c022ab294a9a0cb9ebfd 177 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 83 165 9.4E-29 T 19-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 AMF_RS09780 34d48b61a414c022ab294a9a0cb9ebfd 177 SUPERFAMILY SSF54364 5 73 1.44E-21 T 19-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 AMF_RS09780 34d48b61a414c022ab294a9a0cb9ebfd 177 SUPERFAMILY SSF55200 84 166 7.72E-27 T 19-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 AMF_RS09780 34d48b61a414c022ab294a9a0cb9ebfd 177 Gene3D G3DSA:3.30.110.10 81 167 1.1E-28 T 19-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 PANTHER PTHR32332:SF18 80 299 8.6E-15 T 19-04-2016 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 PANTHER PTHR32332:SF18 4 51 8.6E-15 T 19-04-2016 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 SUPERFAMILY SSF51412 180 311 4.4E-7 T 19-04-2016 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 SUPERFAMILY SSF51412 17 126 4.4E-7 T 19-04-2016 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 PANTHER PTHR32332 371 463 8.6E-15 T 19-04-2016 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 Pfam PF03060 Nitronate monooxygenase 143 349 2.1E-8 T 19-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 PANTHER PTHR32332:SF18 371 463 8.6E-15 T 19-04-2016 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 Gene3D G3DSA:3.20.20.70 26 131 7.0E-6 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 Gene3D G3DSA:3.20.20.70 187 311 7.0E-6 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 PANTHER PTHR32332 80 299 8.6E-15 T 19-04-2016 AMF_RS05505 443c1adac02c32f0fdc50c5a46715f6f 467 PANTHER PTHR32332 4 51 8.6E-15 T 19-04-2016 AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 SUPERFAMILY SSF54747 7 76 3.79E-17 T 19-04-2016 IPR020784 Ribosomal protein L11, N-terminal AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 PANTHER PTHR11661 7 147 3.9E-41 T 19-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 Gene3D G3DSA:1.10.10.250 80 146 8.7E-25 T 19-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 7 146 2.0E-45 T 19-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 SUPERFAMILY SSF46906 74 146 1.57E-20 T 19-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 Pfam PF03946 Ribosomal protein L11, N-terminal domain 10 72 2.6E-18 T 19-04-2016 IPR020784 Ribosomal protein L11, N-terminal AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 SMART SM00649 10 146 1.4E-51 T 19-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 PANTHER PTHR11661:SF1 7 147 3.9E-41 T 19-04-2016 AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 6 147 24.523 T 19-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 Gene3D G3DSA:3.30.1550.10 7 76 1.1E-20 T 19-04-2016 IPR020784 Ribosomal protein L11, N-terminal AMF_RS06005 242702374e03ac5fdbf0192e6dff2269 147 Pfam PF00298 Ribosomal protein L11, RNA binding domain 80 145 8.8E-21 T 19-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 PANTHER PTHR22942 9 342 5.4E-188 T 19-04-2016 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 SUPERFAMILY SSF54752 275 331 2.49E-19 T 19-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 Gene3D G3DSA:3.30.250.10 275 332 7.3E-25 T 19-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 ProSitePatterns PS00321 recA signature. 220 228 - T 19-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 Pfam PF00154 recA bacterial DNA recombination protein 14 275 1.1E-137 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 SUPERFAMILY SSF52540 10 274 2.82E-65 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 Gene3D G3DSA:3.40.50.300 35 274 1.5E-81 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 SMART SM00382 64 235 2.9E-9 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 PRINTS PR00142 RecA protein signature 217 245 3.5E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 PRINTS PR00142 RecA protein signature 250 279 3.5E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 PRINTS PR00142 RecA protein signature 134 163 3.5E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 PRINTS PR00142 RecA protein signature 304 321 3.5E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 PRINTS PR00142 RecA protein signature 100 129 3.5E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 PRINTS PR00142 RecA protein signature 172 201 3.5E-85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 11 330 7.5E-165 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 PANTHER PTHR22942:SF1 9 342 5.4E-188 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_RS05375 d8e8b1cd360757fc4fe0b16ae7509529 357 Hamap MF_00268 Protein RecA [recA]. 12 336 49.85 T 19-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMF_RS05345 9bb155226eebb21425e4be11cbd63bf3 151 Pfam PF02470 MlaD protein 42 116 6.5E-19 T 19-04-2016 IPR003399 Mce/MlaD AMF_RS05345 9bb155226eebb21425e4be11cbd63bf3 151 PANTHER PTHR33371:SF4 1 144 4.5E-26 T 19-04-2016 AMF_RS05345 9bb155226eebb21425e4be11cbd63bf3 151 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 5 146 4.1E-42 T 19-04-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 AMF_RS05345 9bb155226eebb21425e4be11cbd63bf3 151 PANTHER PTHR33371 1 144 4.5E-26 T 19-04-2016 AMF_RS08880 5adfec7f73930998f19fc70616a1816e 290 Gene3D G3DSA:1.10.10.10 125 227 1.1E-24 T 19-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain AMF_RS08880 5adfec7f73930998f19fc70616a1816e 290 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 225 3.2E-17 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMF_RS08880 5adfec7f73930998f19fc70616a1816e 290 Pfam PF00072 Response regulator receiver domain 3 116 2.7E-20 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMF_RS08880 5adfec7f73930998f19fc70616a1816e 290 Gene3D G3DSA:3.40.50.2300 1 124 6.1E-29 T 19-04-2016 AMF_RS08880 5adfec7f73930998f19fc70616a1816e 290 SMART SM00448 1 115 2.9E-26 T 19-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 AMF_RS08880 5adfec7f73930998f19fc70616a1816e 290 SMART SM00862 148 225 1.3E-17 T 19-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMF_RS08880 5adfec7f73930998f19fc70616a1816e 290 SUPERFAMILY SSF52172 1 176 1.12E-30 T 19-04-2016 IPR011006 CheY-like superfamily AMF_RS08880 5adfec7f73930998f19fc70616a1816e 290 PANTHER PTHR26402 1 227 1.1E-83 T 19-04-2016 AMF_RS08880 5adfec7f73930998f19fc70616a1816e 290 PANTHER PTHR26402:SF553 1 227 1.1E-83 T 19-04-2016 AMF_RS08365 178fbb7e2fbca7a25aee263b52db3858 124 Gene3D G3DSA:3.30.420.80 4 124 2.3E-41 T 19-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMF_RS08365 178fbb7e2fbca7a25aee263b52db3858 124 SUPERFAMILY SSF53137 8 124 2.22E-38 T 19-04-2016 AMF_RS08365 178fbb7e2fbca7a25aee263b52db3858 124 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 5 121 3.8E-49 T 19-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08365 178fbb7e2fbca7a25aee263b52db3858 124 Pfam PF00411 Ribosomal protein S11 13 123 4.7E-37 T 19-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMF_RS08365 178fbb7e2fbca7a25aee263b52db3858 124 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 5 124 28.478 T 19-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMF_RS08365 178fbb7e2fbca7a25aee263b52db3858 124 PIRSF PIRSF002131 1 124 1.8E-42 T 19-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMF_RS08365 178fbb7e2fbca7a25aee263b52db3858 124 PANTHER PTHR11759 5 124 8.5E-41 T 19-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMF_RS06625 df1900a88183b90d64a810a6fcc3ed17 445 SUPERFAMILY SSF103473 20 420 1.06E-39 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMF_RS06625 df1900a88183b90d64a810a6fcc3ed17 445 PANTHER PTHR23508 18 439 3.4E-55 T 19-04-2016 AMF_RS06625 df1900a88183b90d64a810a6fcc3ed17 445 Gene3D G3DSA:1.20.1250.20 20 224 2.4E-14 T 19-04-2016 AMF_RS06625 df1900a88183b90d64a810a6fcc3ed17 445 Gene3D G3DSA:1.20.1250.20 248 414 3.9E-4 T 19-04-2016 AMF_RS06625 df1900a88183b90d64a810a6fcc3ed17 445 Pfam PF00083 Sugar (and other) transporter 19 228 5.7E-16 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMF_RS07735 a42a2280efda185af36648cf73915b58 130 Pfam PF04956 TrbC/VIRB2 family 8 100 1.4E-15 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS08335 d19c9da579e51148909ab9089cf029c6 141 Gene3D G3DSA:3.30.230.10 23 135 1.5E-22 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_RS08335 d19c9da579e51148909ab9089cf029c6 141 Pfam PF00825 Ribonuclease P 24 133 3.1E-19 T 19-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMF_RS08335 d19c9da579e51148909ab9089cf029c6 141 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 20 136 13.537 T 19-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMF_RS08335 d19c9da579e51148909ab9089cf029c6 141 SUPERFAMILY SSF54211 20 136 4.55E-20 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS08335 d19c9da579e51148909ab9089cf029c6 141 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 25 132 3.6E-13 T 19-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 316 7.0E-128 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 PIRSF PIRSF002401 1 337 4.1E-123 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 7.0E-33 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 7.0E-33 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 7.0E-33 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 7.0E-33 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 PANTHER PTHR11702 1 308 4.6E-128 T 19-04-2016 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 Hamap MF_01454 GTPase Obg [obg]. 2 325 43.451 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 Gene3D G3DSA:3.40.50.300 161 306 4.0E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 Gene3D G3DSA:2.70.210.12 2 155 3.1E-54 T 19-04-2016 IPR006169 GTP1/OBG domain GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 PANTHER PTHR11702:SF3 1 308 4.6E-128 T 19-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 SUPERFAMILY SSF82051 3 158 9.94E-53 T 19-04-2016 IPR006169 GTP1/OBG domain GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 Pfam PF01018 GTP1/OBG 3 158 1.0E-56 T 19-04-2016 IPR006169 GTP1/OBG domain GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 SUPERFAMILY SSF52540 161 308 3.15E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 Pfam PF01926 50S ribosome-binding GTPase 161 280 2.5E-24 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS07330 e135e3d06245c113e8db0919dcc94221 348 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 19-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 AMF_RS06340 e9a81504702a24e39e2f9cccb188ad17 56 PANTHER PTHR15238 3 56 8.9E-19 T 19-04-2016 AMF_RS06340 e9a81504702a24e39e2f9cccb188ad17 56 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 54 12.541 T 19-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS06340 e9a81504702a24e39e2f9cccb188ad17 56 Pfam PF00471 Ribosomal protein L33 10 54 1.2E-12 T 19-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS06340 e9a81504702a24e39e2f9cccb188ad17 56 PANTHER PTHR15238:SF1 3 56 8.9E-19 T 19-04-2016 AMF_RS06340 e9a81504702a24e39e2f9cccb188ad17 56 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 2 55 2.2E-20 T 19-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS06340 e9a81504702a24e39e2f9cccb188ad17 56 SUPERFAMILY SSF57829 4 54 4.27E-15 T 19-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMF_RS05930 32f1ae7f3f7a598617be1d8c5b07df57 542 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 344 522 2.2E-5 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS05930 32f1ae7f3f7a598617be1d8c5b07df57 542 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 64 250 2.4E-6 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS05930 32f1ae7f3f7a598617be1d8c5b07df57 542 PANTHER PTHR30183 39 533 3.9E-128 T 19-04-2016 AMF_RS05930 32f1ae7f3f7a598617be1d8c5b07df57 542 SUPERFAMILY SSF161098 285 523 3.92E-29 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS05930 32f1ae7f3f7a598617be1d8c5b07df57 542 PANTHER PTHR30183:SF2 39 533 3.9E-128 T 19-04-2016 AMF_RS05930 32f1ae7f3f7a598617be1d8c5b07df57 542 SUPERFAMILY SSF161098 7 256 2.99E-29 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS05930 32f1ae7f3f7a598617be1d8c5b07df57 542 Gene3D G3DSA:1.10.3720.10 7 260 2.5E-24 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS05930 32f1ae7f3f7a598617be1d8c5b07df57 542 Gene3D G3DSA:1.10.3720.10 288 526 5.5E-25 T 19-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AMF_RS09750 dcc80b17bc75df7e2fc893c3f0f0c17a 275 Gene3D G3DSA:3.90.1530.10 30 127 4.6E-35 T 19-04-2016 AMF_RS09750 dcc80b17bc75df7e2fc893c3f0f0c17a 275 Pfam PF02195 ParB-like nuclease domain 32 121 2.5E-25 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMF_RS09750 dcc80b17bc75df7e2fc893c3f0f0c17a 275 SUPERFAMILY SSF109709 113 221 2.88E-32 T 19-04-2016 AMF_RS09750 dcc80b17bc75df7e2fc893c3f0f0c17a 275 SUPERFAMILY SSF110849 31 123 5.23E-26 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMF_RS09750 dcc80b17bc75df7e2fc893c3f0f0c17a 275 PANTHER PTHR33375 3 263 7.7E-76 T 19-04-2016 AMF_RS09750 dcc80b17bc75df7e2fc893c3f0f0c17a 275 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 30 201 1.9E-56 T 19-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMF_RS09750 dcc80b17bc75df7e2fc893c3f0f0c17a 275 PANTHER PTHR33375:SF3 3 263 7.7E-76 T 19-04-2016 AMF_RS09750 dcc80b17bc75df7e2fc893c3f0f0c17a 275 SMART SM00470 30 121 4.3E-32 T 19-04-2016 IPR003115 ParB/Sulfiredoxin AMF_RS08910 f5e86e5862f7b0d61a93782fd562a1d7 163 PIRSF PIRSF002181 6 161 4.4E-44 T 19-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMF_RS08910 f5e86e5862f7b0d61a93782fd562a1d7 163 Gene3D G3DSA:3.90.1180.10 8 147 1.2E-52 T 19-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 AMF_RS08910 f5e86e5862f7b0d61a93782fd562a1d7 163 SUPERFAMILY SSF52161 10 148 2.88E-50 T 19-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 AMF_RS08910 f5e86e5862f7b0d61a93782fd562a1d7 163 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 20 147 24.671 T 19-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMF_RS08910 f5e86e5862f7b0d61a93782fd562a1d7 163 Pfam PF00572 Ribosomal protein L13 19 143 1.2E-48 T 19-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMF_RS08910 f5e86e5862f7b0d61a93782fd562a1d7 163 PANTHER PTHR11545 7 147 2.5E-55 T 19-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMF_RS08910 f5e86e5862f7b0d61a93782fd562a1d7 163 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 12 147 1.7E-51 T 19-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 AMF_RS10070 8f1ce05d530ec76e648409f2f81d893b 235 PANTHER PTHR11907 13 234 1.1E-39 T 19-04-2016 AMF_RS10070 8f1ce05d530ec76e648409f2f81d893b 235 Gene3D G3DSA:3.40.50.2020 79 233 5.7E-26 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMF_RS10070 8f1ce05d530ec76e648409f2f81d893b 235 PANTHER PTHR11907:SF9 13 234 1.1E-39 T 19-04-2016 AMF_RS10070 8f1ce05d530ec76e648409f2f81d893b 235 Pfam PF00156 Phosphoribosyl transferase domain 145 232 6.0E-9 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMF_RS10070 8f1ce05d530ec76e648409f2f81d893b 235 SUPERFAMILY SSF53271 47 233 2.62E-28 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMF_RS07285 9c0211107d46815918f8b2df7c2db756 276 SUPERFAMILY SSF56219 2 273 8.11E-78 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMF_RS07285 9c0211107d46815918f8b2df7c2db756 276 Gene3D G3DSA:3.60.10.10 1 273 6.5E-77 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMF_RS07285 9c0211107d46815918f8b2df7c2db756 276 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 229 240 - T 19-04-2016 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 AMF_RS07285 9c0211107d46815918f8b2df7c2db756 276 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 265 1.1E-25 T 19-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase AMF_RS07285 9c0211107d46815918f8b2df7c2db756 276 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 3 271 5.0E-69 T 19-04-2016 AMF_RS07285 9c0211107d46815918f8b2df7c2db756 276 PANTHER PTHR22748 1 274 1.2E-90 T 19-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMF_RS07285 9c0211107d46815918f8b2df7c2db756 276 PANTHER PTHR22748:SF7 1 274 1.2E-90 T 19-04-2016 AMF_RS07285 9c0211107d46815918f8b2df7c2db756 276 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 3 272 5.2E-66 T 19-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 SUPERFAMILY SSF51998 490 561 2.41E-135 T 19-04-2016 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 SUPERFAMILY SSF51998 80 459 2.41E-135 T 19-04-2016 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 13 78 1.3E-13 T 19-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 20 401 2.3E-104 T 19-04-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 SUPERFAMILY SSF48168 6 77 2.35E-14 T 19-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 Gene3D G3DSA:3.20.70.20 516 561 5.6E-62 T 19-04-2016 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 Gene3D G3DSA:3.20.70.20 10 455 5.6E-62 T 19-04-2016 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 PRINTS PR01183 Ribonucleotide reductase large chain signature 267 278 1.0E-18 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 PRINTS PR01183 Ribonucleotide reductase large chain signature 155 174 1.0E-18 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 PRINTS PR01183 Ribonucleotide reductase large chain signature 346 368 1.0E-18 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 PRINTS PR01183 Ribonucleotide reductase large chain signature 374 397 1.0E-18 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 Pfam PF02867 Ribonucleotide reductase, barrel domain 82 402 1.1E-74 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 Pfam PF02867 Ribonucleotide reductase, barrel domain 411 556 9.8E-33 T 19-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMF_RS08230 f7970651bc4a88100fe966e8195e557d 595 PANTHER PTHR11573 5 569 4.3E-211 T 19-04-2016 AMF_RS08155 df31e33b1bd0b6f6e7825a8d8352067b 516 PANTHER PTHR22773 93 324 8.0E-17 T 19-04-2016 AMF_RS08155 df31e33b1bd0b6f6e7825a8d8352067b 516 Pfam PF00361 Proton-conducting membrane transporter 91 332 1.0E-10 T 19-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 AMF_RS08155 df31e33b1bd0b6f6e7825a8d8352067b 516 PANTHER PTHR22773:SF80 93 324 8.0E-17 T 19-04-2016 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 PRINTS PR00143 Citrate synthase signature 290 310 7.9E-47 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 PRINTS PR00143 Citrate synthase signature 235 263 7.9E-47 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 PRINTS PR00143 Citrate synthase signature 353 369 7.9E-47 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 PRINTS PR00143 Citrate synthase signature 373 387 7.9E-47 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 PRINTS PR00143 Citrate synthase signature 213 228 7.9E-47 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 PRINTS PR00143 Citrate synthase signature 161 174 7.9E-47 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 PANTHER PTHR11739 39 412 3.0E-155 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 ProSitePatterns PS00480 Citrate synthase signature. 297 309 - T 19-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 Pfam PF00285 Citrate synthase, C-terminal domain 45 407 1.0E-120 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 SUPERFAMILY SSF48256 8 414 8.11E-139 T 19-04-2016 IPR002020 Citrate synthase GO:0046912 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 13 415 7.4E-156 T 19-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 PIRSF PIRSF001369 37 417 8.9E-136 T 19-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 Gene3D G3DSA:1.10.580.10 51 274 9.0E-78 T 19-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 AMF_RS09470 32d6cd891f84ac4dfe50bbedc010f27e 417 Gene3D G3DSA:1.10.230.10 275 366 1.7E-39 T 19-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 25 34 - T 19-04-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 Gene3D G3DSA:3.30.565.10 5 229 4.3E-73 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 SUPERFAMILY SSF110942 517 633 5.36E-28 T 19-04-2016 AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 PANTHER PTHR11528:SF44 2 634 2.6E-247 T 19-04-2016 AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 633 28.734 T 19-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 Pfam PF00183 Hsp90 protein 216 633 2.0E-105 T 19-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 SUPERFAMILY SSF54211 224 477 1.37E-81 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 SMART SM00387 27 183 0.0034 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 PIRSF PIRSF002583 1 638 3.3E-196 T 19-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 PRINTS PR00775 90kDa heat shock protein signature 189 207 2.22E-55 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 PRINTS PR00775 90kDa heat shock protein signature 93 110 2.22E-55 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 PRINTS PR00775 90kDa heat shock protein signature 75 92 2.22E-55 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 PRINTS PR00775 90kDa heat shock protein signature 26 48 2.22E-55 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 PRINTS PR00775 90kDa heat shock protein signature 171 188 2.22E-55 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 PRINTS PR00775 90kDa heat shock protein signature 120 142 2.22E-55 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 PRINTS PR00775 90kDa heat shock protein signature 5 25 2.22E-55 T 19-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 SUPERFAMILY SSF55874 5 211 7.47E-60 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 PANTHER PTHR11528 2 634 2.6E-247 T 19-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AMF_RS06450 14e307ba1278b61ab16b846b1b88b48e 638 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 153 2.7E-11 T 19-04-2016 AMF_RS05430 ea674e31d3fd6403d987b54052272e01 313 Gene3D G3DSA:3.40.50.1820 38 309 1.6E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMF_RS05430 ea674e31d3fd6403d987b54052272e01 313 Pfam PF00561 alpha/beta hydrolase fold 57 178 2.5E-11 T 19-04-2016 IPR000073 Alpha/beta hydrolase fold-1 AMF_RS05430 ea674e31d3fd6403d987b54052272e01 313 PANTHER PTHR10992 27 295 6.4E-22 T 19-04-2016 AMF_RS05430 ea674e31d3fd6403d987b54052272e01 313 SUPERFAMILY SSF53474 38 295 4.19E-34 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMF_RS09785 c74bc1456f1328d8a29e8ecab6b45c2f 151 PANTHER PTHR33540 18 148 5.9E-18 T 19-04-2016 AMF_RS09785 c74bc1456f1328d8a29e8ecab6b45c2f 151 SUPERFAMILY SSF52540 31 123 2.88E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09785 c74bc1456f1328d8a29e8ecab6b45c2f 151 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 19 144 5.3E-25 T 19-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMF_RS09785 c74bc1456f1328d8a29e8ecab6b45c2f 151 Gene3D G3DSA:3.40.50.300 20 150 4.3E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09785 c74bc1456f1328d8a29e8ecab6b45c2f 151 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 22 136 1.9E-25 T 19-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 Hamap MF_00105 Transcription elongation factor GreA [greA]. 7 164 28.054 T 19-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 10 164 9.8E-51 T 19-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 Gene3D G3DSA:1.10.287.180 8 79 1.5E-29 T 19-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 PIRSF PIRSF006092 5 165 1.1E-42 T 19-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 SUPERFAMILY SSF46557 8 80 1.7E-25 T 19-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 SUPERFAMILY SSF54534 85 165 7.72E-17 T 19-04-2016 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 Gene3D G3DSA:3.10.50.30 82 165 2.3E-23 T 19-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 85 164 4.0E-26 T 19-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 22 52 - T 19-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 Pfam PF03449 Transcription elongation factor, N-terminal 10 78 2.8E-28 T 19-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMF_RS09420 da6182c99c0f857e93f306db140252ba 166 PANTHER PTHR30437 9 165 1.5E-51 T 19-04-2016 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 190 238 - T 19-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 Gene3D G3DSA:2.60.40.420 125 257 7.4E-56 T 19-04-2016 IPR008972 Cupredoxin AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 36 254 4.4E-64 T 19-04-2016 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 PANTHER PTHR22888 21 261 3.3E-100 T 19-04-2016 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 SUPERFAMILY SSF49503 123 259 5.63E-57 T 19-04-2016 IPR008972 Cupredoxin AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 127 245 3.0E-54 T 19-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 SUPERFAMILY SSF81464 20 116 5.4E-24 T 19-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 Gene3D G3DSA:1.10.287.90 26 118 1.4E-23 T 19-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 26 111 9.9E-16 T 19-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 PRINTS PR01166 Cytochrome c oxidase subunit II signature 123 142 1.3E-44 T 19-04-2016 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 PRINTS PR01166 Cytochrome c oxidase subunit II signature 165 186 1.3E-44 T 19-04-2016 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 PRINTS PR01166 Cytochrome c oxidase subunit II signature 209 226 1.3E-44 T 19-04-2016 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 PRINTS PR01166 Cytochrome c oxidase subunit II signature 101 121 1.3E-44 T 19-04-2016 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 PRINTS PR01166 Cytochrome c oxidase subunit II signature 189 209 1.3E-44 T 19-04-2016 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 PRINTS PR01166 Cytochrome c oxidase subunit II signature 227 244 1.3E-44 T 19-04-2016 AMF_RS08835 08ed82fecd725213a70a4417412e43db 261 PRINTS PR01166 Cytochrome c oxidase subunit II signature 89 101 1.3E-44 T 19-04-2016 AMF_RS05575 d8254aac58615eb3789d76495853d611 430 Pfam PF13393 Histidyl-tRNA synthetase 11 310 6.5E-40 T 19-04-2016 AMF_RS05575 d8254aac58615eb3789d76495853d611 430 PANTHER PTHR11476 5 418 1.0E-156 T 19-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 AMF_RS05575 d8254aac58615eb3789d76495853d611 430 Gene3D G3DSA:3.40.50.800 322 411 2.4E-19 T 19-04-2016 IPR004154 Anticodon-binding AMF_RS05575 d8254aac58615eb3789d76495853d611 430 PANTHER PTHR11476:SF9 5 418 1.0E-156 T 19-04-2016 AMF_RS05575 d8254aac58615eb3789d76495853d611 430 Gene3D G3DSA:3.30.930.10 219 313 2.1E-82 T 19-04-2016 AMF_RS05575 d8254aac58615eb3789d76495853d611 430 Gene3D G3DSA:3.30.930.10 5 183 2.1E-82 T 19-04-2016 AMF_RS05575 d8254aac58615eb3789d76495853d611 430 SUPERFAMILY SSF55681 6 314 7.47E-90 T 19-04-2016 AMF_RS05575 d8254aac58615eb3789d76495853d611 430 PIRSF PIRSF001549 3 413 3.4E-107 T 19-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 AMF_RS05575 d8254aac58615eb3789d76495853d611 430 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 4 415 29.135 T 19-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 AMF_RS05575 d8254aac58615eb3789d76495853d611 430 SUPERFAMILY SSF52954 321 410 8.67E-19 T 19-04-2016 IPR004154 Anticodon-binding AMF_RS05575 d8254aac58615eb3789d76495853d611 430 Pfam PF03129 Anticodon binding domain 324 411 2.4E-13 T 19-04-2016 IPR004154 Anticodon-binding AMF_RS05575 d8254aac58615eb3789d76495853d611 430 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 7 402 3.4E-130 T 19-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 Pfam PF00890 FAD binding domain 16 410 6.0E-128 T 19-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 PANTHER PTHR11632 8 594 0.0 T 19-04-2016 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 Gene3D G3DSA:1.20.58.100 438 544 7.7E-38 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 Pfam PF02910 Fumarate reductase flavoprotein C-term 465 599 2.9E-44 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 50 59 - T 19-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 SUPERFAMILY SSF46977 457 599 4.06E-49 T 19-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 SUPERFAMILY SSF56425 245 363 6.13E-44 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 PANTHER PTHR11632:SF51 8 594 0.0 T 19-04-2016 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 16 599 4.2E-250 T 19-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 Gene3D G3DSA:3.50.50.60 7 251 9.8E-126 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 Gene3D G3DSA:3.50.50.60 359 428 9.8E-126 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 SUPERFAMILY SSF51905 7 268 3.24E-81 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 SUPERFAMILY SSF51905 367 447 3.24E-81 T 19-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 13 599 2.4E-291 T 19-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 Gene3D G3DSA:4.10.80.40 545 599 5.8E-28 T 19-04-2016 AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 Gene3D G3DSA:3.90.700.10 252 357 7.3E-44 T 19-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain AMF_RS05695 f2c1003dc693ce376fc56f771c7f7133 599 PIRSF PIRSF000171 6 589 9.5E-43 T 19-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 SUPERFAMILY SSF54211 228 398 5.88E-50 T 19-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 721 782 4.6E-27 T 19-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 4 792 9.2E-277 T 19-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 Gene3D G3DSA:3.30.565.10 14 210 1.1E-84 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 367 381 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 319 335 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 4 14 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 762 778 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 180 195 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 226 248 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 381 401 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 746 758 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 249 267 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 195 208 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR01159 DNA gyrase subunit B signature 477 486 5.3E-57 T 19-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 SMART SM00387 30 175 4.9E-25 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 170 1.6E-20 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 SUPERFAMILY SSF55874 4 209 2.33E-67 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 SMART SM00433 34 786 3.2E-228 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 1 793 86.664 T 19-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 ProSitePatterns PS00177 DNA topoisomerase II signature. 429 437 - T 19-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 Gene3D G3DSA:3.40.50.670 411 557 9.7E-86 T 19-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 Gene3D G3DSA:3.40.50.670 710 775 9.7E-86 T 19-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PANTHER PTHR10169 2 560 1.4E-246 T 19-04-2016 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PANTHER PTHR10169 710 792 1.4E-246 T 19-04-2016 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 Pfam PF01751 Toprim domain 426 527 3.0E-17 T 19-04-2016 IPR006171 Toprim domain AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 SUPERFAMILY SSF56719 403 567 3.4E-77 T 19-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 SUPERFAMILY SSF56719 719 784 3.4E-77 T 19-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 Pfam PF00204 DNA gyrase B 227 397 4.8E-54 T 19-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 Gene3D G3DSA:3.30.230.10 227 398 9.6E-62 T 19-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 512 529 6.5E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 112 126 6.5E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 34 49 6.5E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 427 441 6.5E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 725 741 6.5E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 69 82 6.5E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 532 544 6.5E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 494 510 6.5E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS07475 b3fa91234aeb1803fe2f27dc23a45def 793 PRINTS PR00418 DNA topoisomerase II family signature 275 288 6.5E-68 T 19-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PIRSF PIRSF000724 2 385 2.7E-130 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PANTHER PTHR11406 10 383 2.8E-138 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 Gene3D G3DSA:3.40.50.1260 10 182 9.8E-64 T 19-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 Pfam PF00162 Phosphoglycerate kinase 11 383 5.6E-125 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 SUPERFAMILY SSF53748 9 383 5.18E-119 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PANTHER PTHR11406:SF0 10 383 2.8E-138 T 19-04-2016 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 19 29 - T 19-04-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 Gene3D G3DSA:3.40.50.1270 186 383 3.9E-60 T 19-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PRINTS PR00477 Phosphoglycerate kinase family signature 14 30 3.3E-61 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PRINTS PR00477 Phosphoglycerate kinase family signature 35 57 3.3E-61 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PRINTS PR00477 Phosphoglycerate kinase family signature 191 210 3.3E-61 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PRINTS PR00477 Phosphoglycerate kinase family signature 140 162 3.3E-61 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PRINTS PR00477 Phosphoglycerate kinase family signature 310 335 3.3E-61 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PRINTS PR00477 Phosphoglycerate kinase family signature 347 358 3.3E-61 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PRINTS PR00477 Phosphoglycerate kinase family signature 371 385 3.3E-61 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 PRINTS PR00477 Phosphoglycerate kinase family signature 112 127 3.3E-61 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS09995 617f91db5a47bed25e2a186c88aef578 385 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 6 385 30.59 T 19-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 SMART SM00490 517 596 9.2E-18 T 19-04-2016 IPR001650 Helicase, C-terminal AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 Gene3D G3DSA:3.40.50.300 274 462 1.6E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 Gene3D G3DSA:2.40.50.140 72 159 3.3E-7 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 PANTHER PTHR24031:SF249 314 610 4.0E-89 T 19-04-2016 AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 PANTHER PTHR24031:SF249 273 297 4.0E-89 T 19-04-2016 AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 PANTHER PTHR24031:SF249 632 652 4.0E-89 T 19-04-2016 AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 SUPERFAMILY SSF52540 401 606 8.17E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 Pfam PF00270 DEAD/DEAH box helicase 285 446 5.8E-18 T 19-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 PANTHER PTHR24031 314 610 4.0E-89 T 19-04-2016 AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 PANTHER PTHR24031 273 297 4.0E-89 T 19-04-2016 AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 PANTHER PTHR24031 632 652 4.0E-89 T 19-04-2016 AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 SMART SM00487 280 468 2.1E-31 T 19-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 Gene3D G3DSA:3.40.50.300 463 643 3.0E-35 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 SUPERFAMILY SSF52540 202 461 2.73E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 Pfam PF00271 Helicase conserved C-terminal domain 486 595 2.6E-17 T 19-04-2016 IPR001650 Helicase, C-terminal AMF_RS10025 567db61d3033a057f4624cbc50e9e486 699 SUPERFAMILY SSF50249 41 199 3.6E-13 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS09560 f05f885bd5278dc5d13361891ca8708d 234 PANTHER PTHR11749 19 233 7.6E-91 T 19-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMF_RS09560 f05f885bd5278dc5d13361891ca8708d 234 PIRSF PIRSF001461 17 234 8.0E-80 T 19-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMF_RS09560 f05f885bd5278dc5d13361891ca8708d 234 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 152 174 - T 19-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMF_RS09560 f05f885bd5278dc5d13361891ca8708d 234 Pfam PF00834 Ribulose-phosphate 3 epimerase family 23 219 1.3E-70 T 19-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMF_RS09560 f05f885bd5278dc5d13361891ca8708d 234 Gene3D G3DSA:3.20.20.70 18 233 2.1E-78 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS09560 f05f885bd5278dc5d13361891ca8708d 234 PANTHER PTHR11749:SF3 19 233 7.6E-91 T 19-04-2016 AMF_RS09560 f05f885bd5278dc5d13361891ca8708d 234 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 50 64 - T 19-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMF_RS09560 f05f885bd5278dc5d13361891ca8708d 234 SUPERFAMILY SSF51366 23 233 8.63E-62 T 19-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AMF_RS09560 f05f885bd5278dc5d13361891ca8708d 234 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 23 232 8.2E-77 T 19-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AMF_RS07530 803a0fda3842137ecb2a6eb2ce2d3ff3 234 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 46 154 1.8E-9 T 19-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMF_RS07530 803a0fda3842137ecb2a6eb2ce2d3ff3 234 SUPERFAMILY SSF53474 3 211 1.58E-47 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMF_RS07530 803a0fda3842137ecb2a6eb2ce2d3ff3 234 PANTHER PTHR12277 29 212 5.8E-55 T 19-04-2016 AMF_RS07530 803a0fda3842137ecb2a6eb2ce2d3ff3 234 Gene3D G3DSA:3.40.50.1820 3 212 4.5E-58 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMF_RS07530 803a0fda3842137ecb2a6eb2ce2d3ff3 234 PANTHER PTHR12277:SF79 29 212 5.8E-55 T 19-04-2016 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 Gene3D G3DSA:3.30.310.50 392 435 1.3E-5 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 256 362 4.2E-24 T 19-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 4.2E-11 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 232 247 4.2E-11 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 172 191 4.2E-11 T 19-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 SUPERFAMILY SSF53738 153 254 3.34E-30 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 SUPERFAMILY SSF55957 401 439 4.97E-7 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 PANTHER PTHR22573 3 448 1.6E-112 T 19-04-2016 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 4 435 8.3E-145 T 19-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 132 1.6E-34 T 19-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 PANTHER PTHR22573:SF15 3 448 1.6E-112 T 19-04-2016 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 Gene3D G3DSA:3.40.120.10 174 247 6.6E-27 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 441 39.419 T 19-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 SUPERFAMILY SSF53738 3 179 6.67E-39 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 SUPERFAMILY SSF53738 240 370 1.22E-25 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 400 438 9.2E-6 T 19-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 Gene3D G3DSA:3.40.120.10 249 363 5.5E-25 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 Gene3D G3DSA:3.40.120.10 3 134 1.9E-35 T 19-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS08630 37c5c17ac24314b5c890b2b364110ff9 452 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 155 252 8.4E-20 T 19-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMF_RS05820 398e1660deef22e43db7946152074614 334 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 72 83 - T 19-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS05820 398e1660deef22e43db7946152074614 334 Gene3D G3DSA:3.30.1490.20 105 181 7.6E-14 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS05820 398e1660deef22e43db7946152074614 334 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 12 309 28.701 T 19-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS05820 398e1660deef22e43db7946152074614 334 Pfam PF07478 D-ala D-ala ligase C-terminus 113 306 6.8E-35 T 19-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS05820 398e1660deef22e43db7946152074614 334 Gene3D G3DSA:3.40.50.20 12 91 3.0E-21 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS05820 398e1660deef22e43db7946152074614 334 SUPERFAMILY SSF56059 105 305 9.93E-42 T 19-04-2016 AMF_RS05820 398e1660deef22e43db7946152074614 334 Gene3D G3DSA:3.30.470.20 95 104 7.4E-33 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS05820 398e1660deef22e43db7946152074614 334 Gene3D G3DSA:3.30.470.20 182 309 7.4E-33 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS05820 398e1660deef22e43db7946152074614 334 Pfam PF01820 D-ala D-ala ligase N-terminus 14 93 9.4E-16 T 19-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS05820 398e1660deef22e43db7946152074614 334 SUPERFAMILY SSF52440 12 105 6.43E-24 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS05820 398e1660deef22e43db7946152074614 334 PANTHER PTHR23132 14 323 2.3E-60 T 19-04-2016 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 Pfam PF08264 Anticodon-binding domain of tRNA 619 763 1.1E-30 T 19-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 TIGRFAM TIGR00422 valS: valine--tRNA ligase 6 804 6.4E-213 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 SUPERFAMILY SSF47323 593 799 2.8E-44 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 Gene3D G3DSA:3.40.50.620 4 186 6.7E-110 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 Gene3D G3DSA:3.40.50.620 350 571 6.7E-110 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 Hamap MF_02005 Valine--tRNA ligase [valS]. 4 793 28.827 T 19-04-2016 IPR022874 Valine-tRNA ligase, type 2 GO:0004832 KEGG: 00970+6.1.1.9 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 SUPERFAMILY SSF52374 4 188 1.73E-111 T 19-04-2016 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 SUPERFAMILY SSF52374 347 587 1.73E-111 T 19-04-2016 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 PRINTS PR00986 Valyl-tRNA synthetase signature 37 48 2.6E-17 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 PRINTS PR00986 Valyl-tRNA synthetase signature 352 365 2.6E-17 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 PRINTS PR00986 Valyl-tRNA synthetase signature 493 511 2.6E-17 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 PRINTS PR00986 Valyl-tRNA synthetase signature 227 244 2.6E-17 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 PRINTS PR00986 Valyl-tRNA synthetase signature 459 480 2.6E-17 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 PANTHER PTHR11946:SF5 1 437 7.9E-207 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 PANTHER PTHR11946:SF5 457 767 7.9E-207 T 19-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 44 55 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 19 579 7.5E-117 T 19-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 SUPERFAMILY SSF50677 191 347 3.01E-39 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 Gene3D G3DSA:3.90.740.10 192 343 1.4E-37 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 PANTHER PTHR11946 1 437 7.9E-207 T 19-04-2016 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 PANTHER PTHR11946 457 767 7.9E-207 T 19-04-2016 AMF_RS09405 6faea31374dc7e46578317e9800e0f90 814 Gene3D G3DSA:1.10.730.10 579 754 1.6E-40 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS09310 716f0031816cd956a3bd160c60d64486 312 Gene3D G3DSA:2.40.160.20 97 266 8.9E-9 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09310 716f0031816cd956a3bd160c60d64486 312 SUPERFAMILY SSF56925 186 273 8.89E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09310 716f0031816cd956a3bd160c60d64486 312 SUPERFAMILY SSF56925 121 152 8.89E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09310 716f0031816cd956a3bd160c60d64486 312 Pfam PF01617 Surface antigen 116 308 5.8E-16 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 Gene3D G3DSA:3.10.290.10 95 192 3.6E-25 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 PANTHER PTHR11831:SF4 3 202 6.1E-49 T 19-04-2016 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 SMART SM00363 92 156 8.8E-18 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 Gene3D G3DSA:1.10.1050.10 5 94 5.5E-23 T 19-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 PANTHER PTHR11831 3 202 6.1E-49 T 19-04-2016 IPR022801 Ribosomal protein S4/S9 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 SMART SM01390 5 91 1.9E-22 T 19-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 ProSitePatterns PS00632 Ribosomal protein S4 signature. 90 114 - T 19-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 6 91 5.2E-16 T 19-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 6 202 8.3E-63 T 19-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 SUPERFAMILY SSF55174 7 202 7.98E-54 T 19-04-2016 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 4 203 27.26 T 19-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMF_RS06170 bf10e8d460347f3cb0a66677fb502ef9 203 Pfam PF01479 S4 domain 93 139 1.4E-17 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 Pfam PF00009 Elongation factor Tu GTP binding domain 7 182 2.1E-55 T 19-04-2016 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 8 602 3.0E-270 T 19-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 156 1.4E-24 T 19-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 SUPERFAMILY SSF54980 402 516 1.49E-28 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMF_RS07740 321e38945b4ded36246592827203d7ed 610 Pfam PF00679 Elongation factor G C-terminus 400 483 4.2E-21 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMF_RS07740 321e38945b4ded36246592827203d7ed 610 SUPERFAMILY SSF52540 3 209 2.76E-55 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07740 321e38945b4ded36246592827203d7ed 610 SMART SM00838 399 487 0.0022 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMF_RS07740 321e38945b4ded36246592827203d7ed 610 Gene3D G3DSA:3.30.70.870 307 403 6.3E-31 T 19-04-2016 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 47 62 - T 19-04-2016 IPR031157 Tr-type G domain, conserved site AMF_RS07740 321e38945b4ded36246592827203d7ed 610 Gene3D G3DSA:3.30.70.240 404 484 6.9E-31 T 19-04-2016 IPR000640 Translation elongation factor EFG, V domain AMF_RS07740 321e38945b4ded36246592827203d7ed 610 PANTHER PTHR23115 1 596 4.5E-259 T 19-04-2016 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 PANTHER PTHR23115:SF14 1 596 4.5E-259 T 19-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 Gene3D G3DSA:2.40.50.250 486 580 2.2E-39 T 19-04-2016 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 PRINTS PR00315 GTP-binding elongation factor signature 74 84 2.6E-14 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 PRINTS PR00315 GTP-binding elongation factor signature 10 23 2.6E-14 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 PRINTS PR00315 GTP-binding elongation factor signature 126 135 2.6E-14 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 PRINTS PR00315 GTP-binding elongation factor signature 90 101 2.6E-14 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 PRINTS PR00315 GTP-binding elongation factor signature 54 62 2.6E-14 T 19-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 Gene3D G3DSA:2.40.30.10 208 306 3.3E-22 T 19-04-2016 AMF_RS07740 321e38945b4ded36246592827203d7ed 610 Gene3D G3DSA:3.40.50.300 4 207 2.6E-60 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07740 321e38945b4ded36246592827203d7ed 610 SUPERFAMILY SSF54980 306 391 1.87E-11 T 19-04-2016 IPR009022 Elongation factor G, III-V domain AMF_RS07740 321e38945b4ded36246592827203d7ed 610 SUPERFAMILY SSF50447 154 302 1.75E-27 T 19-04-2016 IPR009000 Translation protein, beta-barrel domain AMF_RS07740 321e38945b4ded36246592827203d7ed 610 Pfam PF03144 Elongation factor Tu domain 2 222 292 2.7E-9 T 19-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 AMF_RS05290 6cf0535a68d1dcaee049639c0452d958 176 Pfam PF01617 Surface antigen 1 169 2.8E-13 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS07730 6cf0535a68d1dcaee049639c0452d958 176 Pfam PF01617 Surface antigen 1 169 2.8E-13 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS08505 0726bf47bc4a2efffc82c1e70e384e19 223 Pfam PF02224 Cytidylate kinase 15 220 2.2E-43 T 19-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 AMF_RS08505 0726bf47bc4a2efffc82c1e70e384e19 223 Gene3D G3DSA:3.40.50.300 12 220 1.8E-45 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08505 0726bf47bc4a2efffc82c1e70e384e19 223 PANTHER PTHR21299 14 220 5.1E-21 T 19-04-2016 AMF_RS08505 0726bf47bc4a2efffc82c1e70e384e19 223 PANTHER PTHR21299:SF2 14 220 5.1E-21 T 19-04-2016 AMF_RS08505 0726bf47bc4a2efffc82c1e70e384e19 223 SUPERFAMILY SSF52540 12 222 1.32E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08505 0726bf47bc4a2efffc82c1e70e384e19 223 Hamap MF_00238 Cytidylate kinase [cmk]. 13 223 24.329 T 19-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 AMF_RS08505 0726bf47bc4a2efffc82c1e70e384e19 223 TIGRFAM TIGR00017 cmk: cytidylate kinase 12 218 1.3E-44 T 19-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 AMF_RS07705 7f79854daaf43b87077d1c4810672519 146 SUPERFAMILY SSF89360 100 135 2.35E-19 T 19-04-2016 IPR000361 FeS cluster biogenesis AMF_RS07705 7f79854daaf43b87077d1c4810672519 146 SUPERFAMILY SSF89360 9 69 2.35E-19 T 19-04-2016 IPR000361 FeS cluster biogenesis AMF_RS07705 7f79854daaf43b87077d1c4810672519 146 PANTHER PTHR10072 9 73 5.1E-25 T 19-04-2016 AMF_RS07705 7f79854daaf43b87077d1c4810672519 146 PANTHER PTHR10072 97 146 5.1E-25 T 19-04-2016 AMF_RS07705 7f79854daaf43b87077d1c4810672519 146 Gene3D G3DSA:2.60.300.12 8 132 2.8E-22 T 19-04-2016 IPR000361 FeS cluster biogenesis AMF_RS07705 7f79854daaf43b87077d1c4810672519 146 PANTHER PTHR10072:SF26 9 73 5.1E-25 T 19-04-2016 AMF_RS07705 7f79854daaf43b87077d1c4810672519 146 PANTHER PTHR10072:SF26 97 146 5.1E-25 T 19-04-2016 AMF_RS06135 bda84147b13f8d50e8ce0f6d3c69442b 127 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 82 95 - T 19-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 AMF_RS06135 bda84147b13f8d50e8ce0f6d3c69442b 127 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 5 123 1.0E-37 T 19-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 AMF_RS06135 bda84147b13f8d50e8ce0f6d3c69442b 127 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 4 120 4.3E-28 T 19-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 AMF_RS06135 bda84147b13f8d50e8ce0f6d3c69442b 127 Gene3D G3DSA:1.20.1300.10 5 126 2.8E-34 T 19-04-2016 AMF_RS06135 bda84147b13f8d50e8ce0f6d3c69442b 127 PANTHER PTHR10978 6 127 6.9E-28 T 19-04-2016 AMF_RS06135 bda84147b13f8d50e8ce0f6d3c69442b 127 SUPERFAMILY SSF81343 4 126 2.4E-28 T 19-04-2016 AMF_RS06135 bda84147b13f8d50e8ce0f6d3c69442b 127 PIRSF PIRSF000178 2 126 2.7E-35 T 19-04-2016 AMF_RS06135 bda84147b13f8d50e8ce0f6d3c69442b 127 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 6 30 - T 19-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 AMF_RS06110 ab975a22335bcaa44b2c23d591cdb0ed 127 SUPERFAMILY SSF82657 30 118 5.89E-20 T 19-04-2016 IPR002634 BolA protein AMF_RS06110 ab975a22335bcaa44b2c23d591cdb0ed 127 Pfam PF01722 BolA-like protein 44 115 2.1E-18 T 19-04-2016 IPR002634 BolA protein AMF_RS06110 ab975a22335bcaa44b2c23d591cdb0ed 127 Gene3D G3DSA:3.30.70.1500 35 108 1.9E-18 T 19-04-2016 AMF_RS08925 f5a835dcb734f46611c1c4571c145ded 343 Hamap MF_02040 Iron-sulfur cluster carrier protein. 89 334 31.12 T 19-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein AMF_RS08925 f5a835dcb734f46611c1c4571c145ded 343 SUPERFAMILY SSF117916 1 90 4.25E-6 T 19-04-2016 AMF_RS08925 f5a835dcb734f46611c1c4571c145ded 343 PANTHER PTHR23264 1 311 6.2E-92 T 19-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein AMF_RS08925 f5a835dcb734f46611c1c4571c145ded 343 Gene3D G3DSA:3.40.50.300 82 331 2.5E-81 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08925 f5a835dcb734f46611c1c4571c145ded 343 ProSitePatterns PS01215 Mrp family signature. 201 217 - T 19-04-2016 IPR000808 Mrp, conserved site GO:0005524 AMF_RS08925 f5a835dcb734f46611c1c4571c145ded 343 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 94 333 1.9E-81 T 19-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein AMF_RS08925 f5a835dcb734f46611c1c4571c145ded 343 SUPERFAMILY SSF52540 96 312 4.07E-44 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06235 7c91e3955c31fa97a270c34dda70f0c7 272 PANTHER PTHR22778:SF12 4 255 1.4E-74 T 19-04-2016 AMF_RS06235 7c91e3955c31fa97a270c34dda70f0c7 272 Hamap MF_00469 UPF0176 protein YceA [yceA]. 1 253 40.115 T 19-04-2016 IPR020936 Uncharacterised protein family UPF0176 AMF_RS06235 7c91e3955c31fa97a270c34dda70f0c7 272 Gene3D G3DSA:3.40.250.10 87 225 4.3E-38 T 19-04-2016 IPR001763 Rhodanese-like domain AMF_RS06235 7c91e3955c31fa97a270c34dda70f0c7 272 SUPERFAMILY SSF52821 108 224 4.12E-27 T 19-04-2016 IPR001763 Rhodanese-like domain AMF_RS06235 7c91e3955c31fa97a270c34dda70f0c7 272 Pfam PF00581 Rhodanese-like domain 120 208 3.3E-8 T 19-04-2016 IPR001763 Rhodanese-like domain AMF_RS06235 7c91e3955c31fa97a270c34dda70f0c7 272 PANTHER PTHR22778 4 255 1.4E-74 T 19-04-2016 AMF_RS06235 7c91e3955c31fa97a270c34dda70f0c7 272 SMART SM00450 111 213 2.6E-15 T 19-04-2016 IPR001763 Rhodanese-like domain AMF_RS09535 518a4d106963837d419154c84b074b55 342 Pfam PF00953 Glycosyl transferase family 4 87 263 2.3E-32 T 19-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS09535 518a4d106963837d419154c84b074b55 342 ProSitePatterns PS01347 MraY family signature 1. 56 68 - T 19-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS09535 518a4d106963837d419154c84b074b55 342 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 11 338 19.581 T 19-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS09535 518a4d106963837d419154c84b074b55 342 PANTHER PTHR22926 15 337 5.1E-99 T 19-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS09535 518a4d106963837d419154c84b074b55 342 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 56 68 8.9E-5 T 19-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS09535 518a4d106963837d419154c84b074b55 342 PANTHER PTHR22926:SF5 15 337 5.1E-99 T 19-04-2016 AMF_RS09535 518a4d106963837d419154c84b074b55 342 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 25 337 2.9E-82 T 19-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS09535 518a4d106963837d419154c84b074b55 342 ProSitePatterns PS01348 MraY family signature 2. 173 184 - T 19-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 PANTHER PTHR15184:SF8 17 485 0.0 T 19-04-2016 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 Gene3D G3DSA:2.40.10.170 13 90 4.1E-24 T 19-04-2016 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 Hamap MF_01347 ATP synthase subunit beta [atpB]. 15 485 55.2 T 19-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 358 367 - T 19-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 Gene3D G3DSA:1.10.1140.10 370 485 3.6E-53 T 19-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 20 89 7.5E-16 T 19-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 17 485 2.6E-239 T 19-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 SMART SM00382 159 352 1.0E-5 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 SUPERFAMILY SSF50615 17 90 2.38E-19 T 19-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 Gene3D G3DSA:3.40.50.300 94 368 7.1E-104 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 SUPERFAMILY SSF47917 370 484 2.35E-51 T 19-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 SUPERFAMILY SSF52540 94 371 1.36E-84 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 147 367 1.5E-61 T 19-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AMF_RS07565 509f204f118c36d92d0961c7c4f142bf 486 PANTHER PTHR15184 17 485 0.0 T 19-04-2016 AMF_RS09135 0fa5c462d02695a9365971cd1116715b 362 PANTHER PTHR22939 80 102 8.7E-51 T 19-04-2016 AMF_RS09135 0fa5c462d02695a9365971cd1116715b 362 PANTHER PTHR22939 135 362 8.7E-51 T 19-04-2016 AMF_RS09135 0fa5c462d02695a9365971cd1116715b 362 Pfam PF02163 Peptidase family M50 21 347 1.0E-67 T 19-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 AMF_RS09135 0fa5c462d02695a9365971cd1116715b 362 SMART SM00228 127 197 8.3E-6 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS09135 0fa5c462d02695a9365971cd1116715b 362 Gene3D G3DSA:2.30.42.10 106 207 1.4E-19 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS09135 0fa5c462d02695a9365971cd1116715b 362 SUPERFAMILY SSF50156 100 205 1.26E-18 T 19-04-2016 IPR001478 PDZ domain GO:0005515 AMF_RS09135 0fa5c462d02695a9365971cd1116715b 362 PANTHER PTHR22939:SF78 80 102 8.7E-51 T 19-04-2016 AMF_RS09135 0fa5c462d02695a9365971cd1116715b 362 PANTHER PTHR22939:SF78 135 362 8.7E-51 T 19-04-2016 AMF_RS09245 2063162f950119ec4b9fc7f8baf70c7a 249 Gene3D G3DSA:1.10.10.640 102 141 4.9E-11 T 19-04-2016 IPR023094 Toluene tolerance protein, alpha-helical AMF_RS09245 2063162f950119ec4b9fc7f8baf70c7a 249 Gene3D G3DSA:1.10.10.640 200 231 4.9E-11 T 19-04-2016 IPR023094 Toluene tolerance protein, alpha-helical AMF_RS09245 2063162f950119ec4b9fc7f8baf70c7a 249 Pfam PF05494 MlaC protein 85 225 1.4E-20 T 19-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AMF_RS07670 3d15a1358a958a325c9041b87fd872a7 489 Gene3D G3DSA:3.90.1300.10 3 480 3.9E-161 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_RS07670 3d15a1358a958a325c9041b87fd872a7 489 ProSitePatterns PS00571 Amidases signature. 156 187 - T 19-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_RS07670 3d15a1358a958a325c9041b87fd872a7 489 PANTHER PTHR11895:SF7 2 486 4.3E-201 T 19-04-2016 AMF_RS07670 3d15a1358a958a325c9041b87fd872a7 489 Pfam PF01425 Amidase 26 467 6.6E-135 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_RS07670 3d15a1358a958a325c9041b87fd872a7 489 PANTHER PTHR11895 2 486 4.3E-201 T 19-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_RS07670 3d15a1358a958a325c9041b87fd872a7 489 SUPERFAMILY SSF75304 4 482 3.79E-144 T 19-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_RS07670 3d15a1358a958a325c9041b87fd872a7 489 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 476 3.0E-160 T 19-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_RS07670 3d15a1358a958a325c9041b87fd872a7 489 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 13 480 83.63 T 19-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMF_RS06290 fa4782be06f6604212ea0cc0e03b91d5 158 Pfam PF02472 Biopolymer transport protein ExbD/TolR 24 144 2.7E-20 T 19-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 AMF_RS06290 fa4782be06f6604212ea0cc0e03b91d5 158 PANTHER PTHR30558:SF3 5 156 2.2E-23 T 19-04-2016 AMF_RS06290 fa4782be06f6604212ea0cc0e03b91d5 158 PANTHER PTHR30558 5 156 2.2E-23 T 19-04-2016 AMF_RS07210 11951b35b8a4b27bfd6e1c10ca4698bc 234 Pfam PF13489 Methyltransferase domain 47 198 3.5E-24 T 19-04-2016 AMF_RS07210 11951b35b8a4b27bfd6e1c10ca4698bc 234 SUPERFAMILY SSF53335 12 233 6.69E-43 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07210 11951b35b8a4b27bfd6e1c10ca4698bc 234 Gene3D G3DSA:3.40.50.150 21 221 7.6E-43 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07210 11951b35b8a4b27bfd6e1c10ca4698bc 234 PANTHER PTHR10108 4 233 2.2E-63 T 19-04-2016 AMF_RS07210 11951b35b8a4b27bfd6e1c10ca4698bc 234 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 7 234 35.933 T 19-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 AMF_RS07210 11951b35b8a4b27bfd6e1c10ca4698bc 234 PANTHER PTHR10108:SF902 4 233 2.2E-63 T 19-04-2016 AMF_RS07210 11951b35b8a4b27bfd6e1c10ca4698bc 234 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 9 228 1.4E-77 T 19-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 SUPERFAMILY SSF53671 4 298 1.02E-79 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 47 54 - T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 153 295 7.0E-23 T 19-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 Gene3D G3DSA:3.40.50.1370 4 139 2.9E-39 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 5 297 1.6E-78 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 Gene3D G3DSA:3.40.50.1370 140 275 5.7E-45 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 5 144 2.4E-33 T 19-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PANTHER PTHR11405 5 298 6.3E-94 T 19-04-2016 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 214 223 2.2E-25 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 131 148 2.2E-25 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 278 292 2.2E-25 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 255 260 2.2E-25 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 37 59 2.2E-25 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00101 Aspartate carbamoyltransferase signature 75 84 2.2E-25 T 19-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 47 66 3.7E-16 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 132 143 3.7E-16 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 251 260 3.7E-16 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 263 286 3.7E-16 T 19-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMF_RS07550 5ae7efe60484a50992db1653fe0406d9 298 PANTHER PTHR11405:SF16 5 298 6.3E-94 T 19-04-2016 AMF_RS07265 f590546e45e17caaf4dde89f2aeaeb91 110 Gene3D G3DSA:1.10.2060.10 59 108 5.3E-21 T 19-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 AMF_RS07265 f590546e45e17caaf4dde89f2aeaeb91 110 SUPERFAMILY SSF81935 9 108 7.45E-35 T 19-04-2016 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 AMF_RS07265 f590546e45e17caaf4dde89f2aeaeb91 110 Gene3D G3DSA:1.20.5.550 11 58 9.2E-6 T 19-04-2016 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 AMF_RS07265 f590546e45e17caaf4dde89f2aeaeb91 110 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 65 108 4.4E-19 T 19-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 SUPERFAMILY SSF48163 337 526 3.4E-32 T 19-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 TIGRFAM TIGR00467 lysS_arch: lysine--tRNA ligase 31 525 3.9E-57 T 19-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 Gene3D G3DSA:3.40.50.620 25 202 7.4E-43 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 Gene3D G3DSA:3.40.50.620 239 282 7.4E-43 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 Hamap MF_00177 Lysine--tRNA ligase [lysS]. 23 527 28.475 T 19-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 SUPERFAMILY SSF52374 25 338 1.07E-56 T 19-04-2016 AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 Gene3D G3DSA:3.40.50.620 283 327 4.0E-4 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 Pfam PF01921 tRNA synthetases class I (K) 24 370 8.4E-123 T 19-04-2016 AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 Gene3D G3DSA:1.10.10.350 434 526 8.7E-28 T 19-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 PANTHER PTHR37940 15 531 5.5E-140 T 19-04-2016 AMF_RS07535 f9c46ab1dbb1ba01271384561099c0db 533 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 51 60 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 192 1.2E-99 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 PANTHER PTHR10381 1 194 6.2E-137 T 19-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 Pfam PF00574 Clp protease 12 192 2.1E-86 T 19-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 3.3E-50 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 3.3E-50 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 3.3E-50 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 3.3E-50 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 3.3E-50 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 PANTHER PTHR10381:SF11 1 194 6.2E-137 T 19-04-2016 AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 42.671 T 19-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 Gene3D G3DSA:3.90.226.10 3 192 5.1E-88 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 90 101 - T 19-04-2016 IPR018215 ClpP, Ser active site AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 19-04-2016 IPR033135 ClpP, histidine active site AMF_RS06210 b19ded511425b3a5f56d89276009e632 198 SUPERFAMILY SSF52096 10 193 1.07E-72 T 19-04-2016 IPR029045 ClpP/crotonase-like domain AMF_RS08275 60a71965a8c55d5c5b8b1a8c1163ad9f 332 Gene3D G3DSA:3.40.718.10 1 319 5.1E-108 T 19-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 AMF_RS08275 60a71965a8c55d5c5b8b1a8c1163ad9f 332 PIRSF PIRSF002465 1 331 2.9E-99 T 19-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 AMF_RS08275 60a71965a8c55d5c5b8b1a8c1163ad9f 332 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 332 120.258 T 19-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 AMF_RS08275 60a71965a8c55d5c5b8b1a8c1163ad9f 332 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 318 8.7E-87 T 19-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 AMF_RS08275 60a71965a8c55d5c5b8b1a8c1163ad9f 332 SUPERFAMILY SSF53659 1 319 3.87E-83 T 19-04-2016 AMF_RS08275 60a71965a8c55d5c5b8b1a8c1163ad9f 332 PANTHER PTHR30100:SF1 1 313 1.3E-99 T 19-04-2016 AMF_RS08275 60a71965a8c55d5c5b8b1a8c1163ad9f 332 PANTHER PTHR30100 1 313 1.3E-99 T 19-04-2016 AMF_RS08275 60a71965a8c55d5c5b8b1a8c1163ad9f 332 Pfam PF02504 Fatty acid synthesis protein 1 319 9.4E-87 T 19-04-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 UniPathway: UPA00085 AMF_RS09415 76ff12955b3dc5bd313f573cfe2bc8b2 210 PANTHER PTHR21327:SF6 11 209 2.2E-83 T 19-04-2016 AMF_RS09415 76ff12955b3dc5bd313f573cfe2bc8b2 210 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 11 206 2.0E-62 T 19-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS09415 76ff12955b3dc5bd313f573cfe2bc8b2 210 SUPERFAMILY SSF55821 10 208 1.65E-74 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMF_RS09415 76ff12955b3dc5bd313f573cfe2bc8b2 210 PANTHER PTHR21327 11 209 2.2E-83 T 19-04-2016 AMF_RS09415 76ff12955b3dc5bd313f573cfe2bc8b2 210 Gene3D G3DSA:3.90.870.10 11 208 8.5E-79 T 19-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain AMF_RS09415 76ff12955b3dc5bd313f573cfe2bc8b2 210 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 16 206 1.6E-70 T 19-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 SUPERFAMILY SSF51246 309 354 1.02E-10 T 19-04-2016 IPR011054 Rudiment single hybrid motif AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 11 356 36.982 T 19-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 PANTHER PTHR11609:SF5 8 355 1.1E-111 T 19-04-2016 AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 Gene3D G3DSA:3.30.1490.20 118 160 6.2E-5 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 Gene3D G3DSA:3.40.50.20 8 115 1.1E-25 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 Pfam PF02222 ATP-grasp domain 117 285 6.0E-54 T 19-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 Gene3D G3DSA:3.30.470.20 161 354 4.0E-73 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 SUPERFAMILY SSF52440 8 104 2.88E-19 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 SUPERFAMILY SSF56059 107 305 9.02E-63 T 19-04-2016 AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 PANTHER PTHR11609 8 355 1.1E-111 T 19-04-2016 AMF_RS08950 07a18dffc39eeaf90787d96a6b6dc929 356 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 12 355 6.5E-108 T 19-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMF_RS05925 04996d0ae41d1d31e9e5df79b3d397ec 175 PANTHER PTHR30529 1 175 2.0E-42 T 19-04-2016 AMF_RS05925 04996d0ae41d1d31e9e5df79b3d397ec 175 Pfam PF01292 Prokaryotic cytochrome b561 5 175 7.7E-28 T 19-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMF_RS05925 04996d0ae41d1d31e9e5df79b3d397ec 175 Gene3D G3DSA:1.20.950.20 5 67 6.8E-5 T 19-04-2016 AMF_RS05925 04996d0ae41d1d31e9e5df79b3d397ec 175 Gene3D G3DSA:1.20.950.20 88 170 2.9E-5 T 19-04-2016 AMF_RS05925 04996d0ae41d1d31e9e5df79b3d397ec 175 SUPERFAMILY SSF81342 5 162 1.1E-31 T 19-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 AMF_RS07815 6b0c6a98f9ea6eab25b0c65dae48060f 108 PANTHER PTHR11434 10 107 3.7E-31 T 19-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMF_RS07815 6b0c6a98f9ea6eab25b0c65dae48060f 108 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 9 108 17.635 T 19-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMF_RS07815 6b0c6a98f9ea6eab25b0c65dae48060f 108 PANTHER PTHR11434:SF0 10 107 3.7E-31 T 19-04-2016 AMF_RS07815 6b0c6a98f9ea6eab25b0c65dae48060f 108 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 14 102 5.8E-20 T 19-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 ProSitePatterns PS00801 Transketolase signature 1. 14 34 - T 19-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 8 316 5.2E-121 T 19-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 SUPERFAMILY SSF52922 528 656 4.06E-41 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 PANTHER PTHR11624 2 301 0.0 T 19-04-2016 IPR033247 Transketolase family AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 PANTHER PTHR11624 335 657 0.0 T 19-04-2016 IPR033247 Transketolase family AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 ProSitePatterns PS00802 Transketolase signature 2. 461 477 - T 19-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 Gene3D G3DSA:3.40.50.920 532 656 1.6E-41 T 19-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 SUPERFAMILY SSF52518 343 517 1.01E-65 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 Pfam PF02779 Transketolase, pyrimidine binding domain 349 517 1.3E-42 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 TIGRFAM TIGR00232 tktlase_bact: transketolase 9 651 7.6E-238 T 19-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 Gene3D G3DSA:3.40.50.970 334 517 3.8E-70 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 SMART SM00861 348 519 1.8E-63 T 19-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 Gene3D G3DSA:3.40.50.970 5 314 1.1E-113 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 SUPERFAMILY SSF52518 6 310 7.69E-110 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 Pfam PF02780 Transketolase, C-terminal domain 541 648 4.9E-10 T 19-04-2016 IPR033248 Transketolase, C-terminal domain AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 PANTHER PTHR11624:SF1 2 301 0.0 T 19-04-2016 AMF_RS08200 af9e56df884d13d761e66502a819ed1d 660 PANTHER PTHR11624:SF1 335 657 0.0 T 19-04-2016 AMF_RS09490 bad4d83f97d3aead4edcd51d3f3a11c7 299 Pfam PF01791 DeoC/LacD family aldolase 41 282 2.7E-31 T 19-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 AMF_RS09490 bad4d83f97d3aead4edcd51d3f3a11c7 299 SMART SM01133 40 282 7.4E-46 T 19-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 AMF_RS09490 bad4d83f97d3aead4edcd51d3f3a11c7 299 Gene3D G3DSA:3.20.20.70 20 298 3.6E-78 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS09490 bad4d83f97d3aead4edcd51d3f3a11c7 299 SUPERFAMILY SSF51569 23 298 1.71E-63 T 19-04-2016 AMF_RS09490 bad4d83f97d3aead4edcd51d3f3a11c7 299 PIRSF PIRSF038992 21 298 1.5E-59 T 19-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PIRSF PIRSF002869 1 500 2.8E-126 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 351 370 1.2E-51 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 129 153 1.2E-51 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 403 420 1.2E-51 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 31 50 1.2E-51 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 153 174 1.2E-51 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 253 279 1.2E-51 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PRINTS PR01806 Virulence factor MviN signature 50 66 1.2E-51 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 Pfam PF03023 MviN-like protein 26 471 2.8E-93 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PANTHER PTHR11206:SF90 67 82 3.1E-37 T 19-04-2016 AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PANTHER PTHR11206:SF90 214 440 3.1E-37 T 19-04-2016 AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PANTHER PTHR11206 67 82 3.1E-37 T 19-04-2016 AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 PANTHER PTHR11206 214 440 3.1E-37 T 19-04-2016 AMF_RS09625 50cb5c64810eb4cf438edff45a75ead8 501 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 494 1.2E-102 T 19-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ AMF_RS09855 1380b7057b43327e1edb142230680210 283 Gene3D G3DSA:3.30.930.10 2 204 1.1E-79 T 19-04-2016 AMF_RS09855 1380b7057b43327e1edb142230680210 283 SUPERFAMILY SSF55681 1 279 9.28E-112 T 19-04-2016 AMF_RS09855 1380b7057b43327e1edb142230680210 283 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 1 282 46.967 T 19-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09855 1380b7057b43327e1edb142230680210 283 Gene3D G3DSA:1.20.58.180 206 278 5.9E-25 T 19-04-2016 AMF_RS09855 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 133 153 1.9E-48 T 19-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09855 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 76 96 1.9E-48 T 19-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09855 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 242 258 1.9E-48 T 19-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09855 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 107 131 1.9E-48 T 19-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09855 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 55 70 1.9E-48 T 19-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09855 1380b7057b43327e1edb142230680210 283 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 156 171 1.9E-48 T 19-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09855 1380b7057b43327e1edb142230680210 283 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 3 278 5.1E-122 T 19-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09855 1380b7057b43327e1edb142230680210 283 PANTHER PTHR30075 2 278 6.9E-127 T 19-04-2016 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 PANTHER PTHR10836:SF50 1 330 8.3E-147 T 19-04-2016 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 153 1.3E-44 T 19-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 SUPERFAMILY SSF55347 153 314 3.43E-56 T 19-04-2016 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 SMART SM00846 2 153 1.0E-65 T 19-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 3 325 8.6E-111 T 19-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 PANTHER PTHR10836 1 330 8.3E-147 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 7.0E-26 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 7.0E-26 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 7.0E-26 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 7.0E-26 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 7.0E-26 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 SUPERFAMILY SSF51735 3 169 3.16E-51 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 Gene3D G3DSA:3.40.50.720 1 161 2.7E-57 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 Gene3D G3DSA:3.30.360.10 162 315 2.7E-59 T 19-04-2016 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 313 1.9E-48 T 19-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 AMF_RS09810 c1eddfdec8d2fc43c99c93f74e7c6073 334 PIRSF PIRSF000149 1 334 7.7E-126 T 19-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 Pfam PF09334 tRNA synthetases class I (M) 32 164 2.5E-19 T 19-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 SUPERFAMILY SSF52374 402 638 3.34E-137 T 19-04-2016 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 SUPERFAMILY SSF52374 2 219 3.34E-137 T 19-04-2016 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 Gene3D G3DSA:1.10.730.10 618 761 7.5E-36 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 SUPERFAMILY SSF47323 633 823 6.17E-31 T 19-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 215 390 1.2E-47 T 19-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 Gene3D G3DSA:3.40.50.620 2 218 6.3E-139 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 Gene3D G3DSA:3.40.50.620 403 617 6.3E-139 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 588 629 6.8E-10 T 19-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 404 556 1.8E-11 T 19-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 35 46 - T 19-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 Gene3D G3DSA:3.90.740.10 219 402 1.4E-34 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PRINTS PR00985 Leucyl-tRNA synthetase signature 542 552 9.1E-44 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PRINTS PR00985 Leucyl-tRNA synthetase signature 509 531 9.1E-44 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PRINTS PR00985 Leucyl-tRNA synthetase signature 146 162 9.1E-44 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PRINTS PR00985 Leucyl-tRNA synthetase signature 208 227 9.1E-44 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PRINTS PR00985 Leucyl-tRNA synthetase signature 473 491 9.1E-44 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PRINTS PR00985 Leucyl-tRNA synthetase signature 120 137 9.1E-44 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PRINTS PR00985 Leucyl-tRNA synthetase signature 178 191 9.1E-44 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 2 823 20.794 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PANTHER PTHR11946 232 257 0.0 T 19-04-2016 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PANTHER PTHR11946 1 199 0.0 T 19-04-2016 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PANTHER PTHR11946 273 556 0.0 T 19-04-2016 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PANTHER PTHR11946 585 822 0.0 T 19-04-2016 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 3 823 1.1E-284 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 Pfam PF08264 Anticodon-binding domain of tRNA 666 784 1.2E-17 T 19-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 SUPERFAMILY SSF50677 232 401 3.77E-42 T 19-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PANTHER PTHR11946:SF7 232 257 0.0 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PANTHER PTHR11946:SF7 1 199 0.0 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PANTHER PTHR11946:SF7 273 556 0.0 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS06715 e11242d4dc0274f5c9dbaecb4ddabcb2 824 PANTHER PTHR11946:SF7 585 822 0.0 T 19-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 AMF_RS08615 3d3735524d132184debb74c15666f019 462 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 460 2.4E-223 T 19-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS08615 3d3735524d132184debb74c15666f019 462 Pfam PF10415 Fumarase C C-terminus 407 459 6.3E-20 T 19-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS08615 3d3735524d132184debb74c15666f019 462 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 88.188 T 19-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 AMF_RS08615 3d3735524d132184debb74c15666f019 462 Pfam PF00206 Lyase 11 341 7.0E-112 T 19-04-2016 IPR022761 Fumarate lyase, N-terminal AMF_RS08615 3d3735524d132184debb74c15666f019 462 SUPERFAMILY SSF48557 3 459 1.23E-155 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMF_RS08615 3d3735524d132184debb74c15666f019 462 Gene3D G3DSA:1.10.275.10 2 137 7.5E-62 T 19-04-2016 IPR024083 Fumarase/histidase, N-terminal AMF_RS08615 3d3735524d132184debb74c15666f019 462 PANTHER PTHR11444:SF1 3 461 2.3E-253 T 19-04-2016 AMF_RS08615 3d3735524d132184debb74c15666f019 462 PANTHER PTHR11444 3 461 2.3E-253 T 19-04-2016 IPR000362 Fumarate lyase family AMF_RS08615 3d3735524d132184debb74c15666f019 462 Gene3D G3DSA:1.10.40.30 404 462 4.3E-26 T 19-04-2016 AMF_RS08615 3d3735524d132184debb74c15666f019 462 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 1.6E-35 T 19-04-2016 IPR000362 Fumarate lyase family AMF_RS08615 3d3735524d132184debb74c15666f019 462 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 1.6E-35 T 19-04-2016 IPR000362 Fumarate lyase family AMF_RS08615 3d3735524d132184debb74c15666f019 462 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 1.6E-35 T 19-04-2016 IPR000362 Fumarate lyase family AMF_RS08615 3d3735524d132184debb74c15666f019 462 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 1.6E-35 T 19-04-2016 IPR000362 Fumarate lyase family AMF_RS08615 3d3735524d132184debb74c15666f019 462 Gene3D G3DSA:1.20.200.10 138 399 7.7E-108 T 19-04-2016 AMF_RS08615 3d3735524d132184debb74c15666f019 462 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 19-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 AMF_RS05920 915e9a429317672c75fd04bd52c5fbce 338 Gene3D G3DSA:3.20.20.70 13 322 6.2E-53 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS05920 915e9a429317672c75fd04bd52c5fbce 338 PANTHER PTHR32332 4 334 8.1E-72 T 19-04-2016 AMF_RS05920 915e9a429317672c75fd04bd52c5fbce 338 SUPERFAMILY SSF51412 13 332 2.59E-49 T 19-04-2016 AMF_RS05920 915e9a429317672c75fd04bd52c5fbce 338 PANTHER PTHR32332:SF20 4 334 8.1E-72 T 19-04-2016 AMF_RS05920 915e9a429317672c75fd04bd52c5fbce 338 Pfam PF03060 Nitronate monooxygenase 83 328 1.6E-30 T 19-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMF_RS08875 74d77a87ec11fe62809734a555e15389 204 PANTHER PTHR12124 19 183 1.2E-71 T 19-04-2016 AMF_RS08875 74d77a87ec11fe62809734a555e15389 204 SUPERFAMILY SSF53098 13 190 7.59E-50 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS08875 74d77a87ec11fe62809734a555e15389 204 PANTHER PTHR12124:SF48 19 183 1.2E-71 T 19-04-2016 AMF_RS08875 74d77a87ec11fe62809734a555e15389 204 SMART SM00474 1 168 7.8E-35 T 19-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMF_RS08875 74d77a87ec11fe62809734a555e15389 204 Pfam PF01612 3'-5' exonuclease 18 168 1.3E-38 T 19-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMF_RS08875 74d77a87ec11fe62809734a555e15389 204 Gene3D G3DSA:3.30.420.10 17 177 2.2E-19 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS07460 a396e8811335b5836aaee3dfa969b067 345 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 9 340 24.529 T 19-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 AMF_RS07460 a396e8811335b5836aaee3dfa969b067 345 Pfam PF00146 NADH dehydrogenase 15 333 6.0E-123 T 19-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 AMF_RS07460 a396e8811335b5836aaee3dfa969b067 345 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 221 234 - T 19-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 AMF_RS07460 a396e8811335b5836aaee3dfa969b067 345 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 52 67 - T 19-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 AMF_RS07460 a396e8811335b5836aaee3dfa969b067 345 PANTHER PTHR11432 14 345 1.2E-163 T 19-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 AMF_RS07460 a396e8811335b5836aaee3dfa969b067 345 PANTHER PTHR11432:SF3 14 345 1.2E-163 T 19-04-2016 AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 PANTHER PTHR11760 2 205 1.2E-114 T 19-04-2016 AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 Pfam PF07650 KH domain 38 109 4.1E-18 T 19-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 SMART SM00322 59 124 2.0E-4 T 19-04-2016 IPR004087 K Homology domain GO:0003676 AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 SUPERFAMILY SSF54821 106 205 1.31E-38 T 19-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 Gene3D G3DSA:3.30.1140.32 107 205 3.2E-44 T 19-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 ProSitePatterns PS00548 Ribosomal protein S3 signature. 162 196 - T 19-04-2016 IPR018280 Ribosomal protein S3, conserved site AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 Gene3D G3DSA:3.30.300.20 17 106 3.9E-26 T 19-04-2016 IPR015946 K homology domain-like, alpha/beta AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 201 3.0E-38 T 19-04-2016 AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 205 36.833 T 19-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 206 4.5E-88 T 19-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 SUPERFAMILY SSF54814 2 105 1.05E-31 T 19-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 AMF_RS08445 619e070e13a7f13af91f3a8d61ef13f9 211 PANTHER PTHR11760:SF19 2 205 1.2E-114 T 19-04-2016 AMF_RS09905 bb2f28b4bba5606acfc83caba27cab44 398 Pfam PF04860 Phage portal protein 48 383 2.4E-85 T 19-04-2016 IPR006944 Bacteriophage/Gene transfer agent portal protein AMF_RS09905 bb2f28b4bba5606acfc83caba27cab44 398 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 40 390 2.5E-66 T 19-04-2016 IPR006427 Phage portal protein, HK97 AMF_RS08565 bfcca2f91c08ee6957dac28223a93065 282 SUPERFAMILY SSF48403 180 270 2.33E-14 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS08565 bfcca2f91c08ee6957dac28223a93065 282 PANTHER PTHR24124 215 268 1.8E-15 T 19-04-2016 AMF_RS08565 bfcca2f91c08ee6957dac28223a93065 282 Pfam PF12796 Ankyrin repeats (3 copies) 197 267 1.6E-9 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS08565 bfcca2f91c08ee6957dac28223a93065 282 SMART SM00248 248 277 180.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS08565 bfcca2f91c08ee6957dac28223a93065 282 SMART SM00248 215 244 8.6E-5 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS08565 bfcca2f91c08ee6957dac28223a93065 282 Gene3D G3DSA:1.25.40.20 210 269 3.3E-14 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS06735 690eaee4d10252e1b6ff2f63d6bd57c9 261 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 261 24.767 T 19-04-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMF_RS06735 690eaee4d10252e1b6ff2f63d6bd57c9 261 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 245 7.6E-46 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMF_RS06735 690eaee4d10252e1b6ff2f63d6bd57c9 261 PANTHER PTHR30457 1 257 8.6E-47 T 19-04-2016 AMF_RS06735 690eaee4d10252e1b6ff2f63d6bd57c9 261 Pfam PF01975 Survival protein SurE 3 183 7.7E-41 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMF_RS06735 690eaee4d10252e1b6ff2f63d6bd57c9 261 SUPERFAMILY SSF64167 1 259 9.02E-61 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMF_RS06735 690eaee4d10252e1b6ff2f63d6bd57c9 261 Gene3D G3DSA:3.40.1210.10 1 257 1.8E-62 T 19-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 AMF_RS05300 58dfe919334f6237f4d9fa665008911f 126 Pfam PF04956 TrbC/VIRB2 family 7 98 9.8E-16 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS09165 308bca5a1550bf24a74839595ce87bca 434 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 15 391 1.1E-9 T 19-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS09165 308bca5a1550bf24a74839595ce87bca 434 SUPERFAMILY SSF81442 7 429 3.14E-42 T 19-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 SUPERFAMILY SSF48150 9 205 8.01E-67 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 Hamap MF_00942 Endonuclease III [nth]. 1 207 35.778 T 19-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 32 166 3.6E-21 T 19-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 PANTHER PTHR10359 13 206 1.4E-77 T 19-04-2016 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 PANTHER PTHR10359:SF18 13 206 1.4E-77 T 19-04-2016 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 Gene3D G3DSA:1.10.340.30 22 120 2.0E-31 T 19-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 Gene3D G3DSA:1.10.1670.10 121 205 3.0E-32 T 19-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 Pfam PF00633 Helix-hairpin-helix motif 98 124 1.4E-5 T 19-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 SMART SM00478 36 183 1.0E-53 T 19-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 ProSitePatterns PS01155 Endonuclease III family signature. 100 129 - T 19-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 SMART SM00525 184 204 5.3E-5 T 19-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 PIRSF PIRSF001435 2 209 1.4E-44 T 19-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMF_RS06440 b4a09fef6b968a9de82a4b59e6ce26ba 210 TIGRFAM TIGR01083 nth: endonuclease III 7 192 6.1E-78 T 19-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMF_RS07415 cdc915217432e8878cecb5c2d8ed1ddc 232 Pfam PF00929 Exonuclease 6 164 4.9E-41 T 19-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III AMF_RS07415 cdc915217432e8878cecb5c2d8ed1ddc 232 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 4 224 1.0E-80 T 19-04-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS07415 cdc915217432e8878cecb5c2d8ed1ddc 232 SMART SM00479 4 173 1.5E-53 T 19-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III AMF_RS07415 cdc915217432e8878cecb5c2d8ed1ddc 232 SUPERFAMILY SSF53098 4 172 2.94E-55 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS07415 cdc915217432e8878cecb5c2d8ed1ddc 232 PANTHER PTHR30231 3 177 1.9E-66 T 19-04-2016 AMF_RS07415 cdc915217432e8878cecb5c2d8ed1ddc 232 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 4 197 3.1E-48 T 19-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS07415 cdc915217432e8878cecb5c2d8ed1ddc 232 Gene3D G3DSA:3.30.420.10 4 173 3.4E-63 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS07415 cdc915217432e8878cecb5c2d8ed1ddc 232 PANTHER PTHR30231:SF0 3 177 1.9E-66 T 19-04-2016 AMF_RS06750 6ceb7c82e8c002a5e6dc2b47aed2d1ae 121 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 24 120 2.6E-31 T 19-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 AMF_RS06750 6ceb7c82e8c002a5e6dc2b47aed2d1ae 121 PANTHER PTHR11058:SF10 6 121 2.4E-37 T 19-04-2016 AMF_RS06750 6ceb7c82e8c002a5e6dc2b47aed2d1ae 121 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 3 121 16.996 T 19-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 AMF_RS06750 6ceb7c82e8c002a5e6dc2b47aed2d1ae 121 PANTHER PTHR11058 6 121 2.4E-37 T 19-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 AMF_RS05815 f211e1d1a655868088f22670410f6513 301 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 294 7.9E-122 T 19-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 AMF_RS05815 f211e1d1a655868088f22670410f6513 301 SUPERFAMILY SSF56059 109 293 1.49E-45 T 19-04-2016 AMF_RS05815 f211e1d1a655868088f22670410f6513 301 SUPERFAMILY SSF52440 4 107 3.45E-23 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS05815 f211e1d1a655868088f22670410f6513 301 Gene3D G3DSA:3.30.470.20 176 281 1.2E-35 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS05815 f211e1d1a655868088f22670410f6513 301 PANTHER PTHR21621 3 299 1.3E-68 T 19-04-2016 AMF_RS05815 f211e1d1a655868088f22670410f6513 301 Hamap MF_00162 Glutathione synthetase [gshB]. 1 299 100.864 T 19-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 AMF_RS05815 f211e1d1a655868088f22670410f6513 301 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 5 105 1.7E-24 T 19-04-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 AMF_RS05815 f211e1d1a655868088f22670410f6513 301 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 109 280 1.2E-57 T 19-04-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 AMF_RS05815 f211e1d1a655868088f22670410f6513 301 Gene3D G3DSA:3.40.50.20 4 113 2.0E-28 T 19-04-2016 IPR016185 Pre-ATP-grasp domain AMF_RS05815 f211e1d1a655868088f22670410f6513 301 PANTHER PTHR21621:SF4 3 299 1.3E-68 T 19-04-2016 AMF_RS05815 f211e1d1a655868088f22670410f6513 301 Gene3D G3DSA:3.30.1490.20 122 175 2.3E-17 T 19-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 2 690 19.019 T 19-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 306 322 4.3E-17 T 19-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 6 19 4.3E-17 T 19-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 238 253 4.3E-17 T 19-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 383 402 4.3E-17 T 19-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 Pfam PF05746 DALR anticodon binding domain 579 680 1.5E-5 T 19-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 PANTHER PTHR30075:SF2 1 693 3.8E-161 T 19-04-2016 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 SUPERFAMILY SSF109604 327 472 2.2E-11 T 19-04-2016 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 5 550 6.2E-146 T 19-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 PANTHER PTHR30075 1 693 3.8E-161 T 19-04-2016 AMF_RS09860 01ef4dd663c3d6686f433158753c3478 694 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 690 3.2E-132 T 19-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMF_RS08465 b0d4d4bf1bbe545d7dc56fc1ba0602c4 96 Gene3D G3DSA:3.30.70.330 1 92 1.6E-19 T 19-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 AMF_RS08465 b0d4d4bf1bbe545d7dc56fc1ba0602c4 96 SUPERFAMILY SSF54189 1 91 2.73E-20 T 19-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08465 b0d4d4bf1bbe545d7dc56fc1ba0602c4 96 Pfam PF00276 Ribosomal protein L23 6 90 8.5E-18 T 19-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMF_RS08465 b0d4d4bf1bbe545d7dc56fc1ba0602c4 96 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 4 94 14.805 T 19-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMF_RS09870 81d2c5266e65b5919dd85545ca49e58d 272 SUPERFAMILY SSF54675 2 103 1.1E-21 T 19-04-2016 AMF_RS09870 81d2c5266e65b5919dd85545ca49e58d 272 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 6 270 2.1E-76 T 19-04-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 AMF_RS09870 81d2c5266e65b5919dd85545ca49e58d 272 PANTHER PTHR32179 3 272 9.1E-82 T 19-04-2016 AMF_RS09870 81d2c5266e65b5919dd85545ca49e58d 272 Gene3D G3DSA:3.90.1170.20 3 125 5.2E-35 T 19-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 AMF_RS09870 81d2c5266e65b5919dd85545ca49e58d 272 SUPERFAMILY SSF51690 105 270 2.59E-51 T 19-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 AMF_RS09870 81d2c5266e65b5919dd85545ca49e58d 272 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 105 269 2.8E-48 T 19-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 AMF_RS09870 81d2c5266e65b5919dd85545ca49e58d 272 Gene3D G3DSA:3.20.20.70 126 260 2.4E-49 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS09870 81d2c5266e65b5919dd85545ca49e58d 272 PIRSF PIRSF006250 1 272 7.9E-74 T 19-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD AMF_RS09870 81d2c5266e65b5919dd85545ca49e58d 272 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 17 103 9.2E-23 T 19-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 AMF_RS05710 45b1760880b38b16a55d46ede8f49c5f 393 PANTHER PTHR23502:SF19 29 386 3.8E-53 T 19-04-2016 AMF_RS05710 45b1760880b38b16a55d46ede8f49c5f 393 Gene3D G3DSA:1.20.1250.20 8 186 1.3E-27 T 19-04-2016 AMF_RS05710 45b1760880b38b16a55d46ede8f49c5f 393 Gene3D G3DSA:1.20.1250.20 208 391 4.7E-9 T 19-04-2016 AMF_RS05710 45b1760880b38b16a55d46ede8f49c5f 393 PANTHER PTHR23502 29 386 3.8E-53 T 19-04-2016 AMF_RS05710 45b1760880b38b16a55d46ede8f49c5f 393 SUPERFAMILY SSF103473 6 389 1.1E-52 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMF_RS05710 45b1760880b38b16a55d46ede8f49c5f 393 Pfam PF07690 Major Facilitator Superfamily 13 355 3.5E-35 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMF_RS08990 d8c857258d59734f335a25c0593eb180 124 Pfam PF04956 TrbC/VIRB2 family 5 102 8.6E-17 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS06240 a457ef988247c278266b0acd2cf051d2 279 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 7 270 54.615 T 19-04-2016 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein AMF_RS06240 a457ef988247c278266b0acd2cf051d2 279 Pfam PF03618 Kinase/pyrophosphorylase 9 264 1.5E-84 T 19-04-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 AMF_RS06240 a457ef988247c278266b0acd2cf051d2 279 PANTHER PTHR31756 9 274 1.9E-77 T 19-04-2016 AMF_RS06240 a457ef988247c278266b0acd2cf051d2 279 PANTHER PTHR31756:SF3 9 274 1.9E-77 T 19-04-2016 AMF_RS06850 6ce7a01ec724cca49113c62e12a3674a 199 SUPERFAMILY SSF52833 20 187 1.01E-24 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS06850 6ce7a01ec724cca49113c62e12a3674a 199 Gene3D G3DSA:3.40.30.10 20 189 1.0E-30 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS06850 6ce7a01ec724cca49113c62e12a3674a 199 Pfam PF00578 AhpC/TSA family 63 177 5.6E-10 T 19-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 AMF_RS05335 971e75432b8324a9cb701651a34f4051 151 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 145 1.1E-46 T 19-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMF_RS05335 971e75432b8324a9cb701651a34f4051 151 PANTHER PTHR30455 2 149 7.4E-52 T 19-04-2016 AMF_RS05335 971e75432b8324a9cb701651a34f4051 151 PANTHER PTHR30455:SF2 2 149 7.4E-52 T 19-04-2016 AMF_RS05335 971e75432b8324a9cb701651a34f4051 151 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 151 67.271 T 19-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMF_RS05335 971e75432b8324a9cb701651a34f4051 151 Pfam PF03477 ATP cone domain 50 136 2.5E-11 T 19-04-2016 IPR005144 ATP-cone domain AMF_RS05580 d0f6fcc32a9e1de1caccbdfd28cc52b4 251 PANTHER PTHR13887:SF25 30 248 3.8E-32 T 19-04-2016 AMF_RS05580 d0f6fcc32a9e1de1caccbdfd28cc52b4 251 SUPERFAMILY SSF52833 70 239 2.55E-32 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05580 d0f6fcc32a9e1de1caccbdfd28cc52b4 251 Gene3D G3DSA:3.40.30.10 74 241 2.6E-34 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05580 d0f6fcc32a9e1de1caccbdfd28cc52b4 251 PANTHER PTHR13887 30 248 3.8E-32 T 19-04-2016 AMF_RS05580 d0f6fcc32a9e1de1caccbdfd28cc52b4 251 Pfam PF13462 Thioredoxin 83 240 3.7E-18 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS07170 d296ca8d4e40ae6092b6c11bef303afa 210 PANTHER PTHR36115 100 202 6.5E-17 T 19-04-2016 AMF_RS07170 d296ca8d4e40ae6092b6c11bef303afa 210 Pfam PF06271 RDD family 33 183 3.7E-21 T 19-04-2016 IPR010432 RDD AMF_RS07170 d296ca8d4e40ae6092b6c11bef303afa 210 PANTHER PTHR36115:SF3 100 202 6.5E-17 T 19-04-2016 AMF_RS06670 e2c25448b5b03f67e1d438d7706a6f73 238 Gene3D G3DSA:3.20.20.70 2 234 3.1E-90 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS06670 e2c25448b5b03f67e1d438d7706a6f73 238 PANTHER PTHR30456 1 238 5.9E-104 T 19-04-2016 AMF_RS06670 e2c25448b5b03f67e1d438d7706a6f73 238 SUPERFAMILY SSF63892 2 234 1.14E-84 T 19-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 AMF_RS06670 e2c25448b5b03f67e1d438d7706a6f73 238 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 2 231 1.1E-85 T 19-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 AMF_RS06670 e2c25448b5b03f67e1d438d7706a6f73 238 PANTHER PTHR30456:SF0 1 238 5.9E-104 T 19-04-2016 AMF_RS06670 e2c25448b5b03f67e1d438d7706a6f73 238 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 3 232 1.1E-72 T 19-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 AMF_RS06670 e2c25448b5b03f67e1d438d7706a6f73 238 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 236 99.001 T 19-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 AMF_RS08435 401cdf4dab4b1185d450ed89e5bc2a4a 68 TIGRFAM TIGR00012 L29: ribosomal protein uL29 6 61 9.9E-8 T 19-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08435 401cdf4dab4b1185d450ed89e5bc2a4a 68 SUPERFAMILY SSF46561 5 63 1.57E-10 T 19-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08435 401cdf4dab4b1185d450ed89e5bc2a4a 68 Gene3D G3DSA:1.10.287.310 6 62 2.8E-9 T 19-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08435 401cdf4dab4b1185d450ed89e5bc2a4a 68 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 61 10.806 T 19-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08435 401cdf4dab4b1185d450ed89e5bc2a4a 68 Pfam PF00831 Ribosomal L29 protein 6 60 4.3E-10 T 19-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05785 78842a54f8f242afd682545a9e769942 506 Pfam PF00361 Proton-conducting membrane transporter 140 439 5.7E-49 T 19-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 AMF_RS05785 78842a54f8f242afd682545a9e769942 506 PANTHER PTHR22773:SF46 17 497 9.4E-109 T 19-04-2016 AMF_RS05785 78842a54f8f242afd682545a9e769942 506 PANTHER PTHR22773 17 497 9.4E-109 T 19-04-2016 AMF_RS05785 78842a54f8f242afd682545a9e769942 506 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 434 453 4.8E-16 T 19-04-2016 AMF_RS05785 78842a54f8f242afd682545a9e769942 506 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 109 4.8E-16 T 19-04-2016 AMF_RS05785 78842a54f8f242afd682545a9e769942 506 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 249 275 4.8E-16 T 19-04-2016 AMF_RS05785 78842a54f8f242afd682545a9e769942 506 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 227 248 4.8E-16 T 19-04-2016 AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 PANTHER PTHR30270:SF0 21 347 1.0E-90 T 19-04-2016 AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 Pfam PF02769 AIR synthase related protein, C-terminal domain 179 331 4.9E-9 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 Gene3D G3DSA:3.90.650.10 174 347 1.8E-38 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 33 345 27.011 T 19-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 SUPERFAMILY SSF55326 32 167 2.09E-29 T 19-04-2016 AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 Pfam PF00586 AIR synthase related protein, N-terminal domain 56 167 9.4E-21 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 35 347 8.6E-85 T 19-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 SUPERFAMILY SSF56042 173 334 2.99E-33 T 19-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 PIRSF PIRSF005303 27 348 2.3E-90 T 19-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 Gene3D G3DSA:3.30.1330.10 31 167 3.3E-34 T 19-04-2016 IPR016188 PurM-like, N-terminal domain AMF_RS07120 d13361018b2b6d01336ecb9dbcfef8e3 349 PANTHER PTHR30270 21 347 1.0E-90 T 19-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 AMF_RS08845 ea661db1f386a9706b68b7af6652042a 301 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 22 297 1.1E-92 T 19-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 AMF_RS08845 ea661db1f386a9706b68b7af6652042a 301 PANTHER PTHR11048 14 298 5.9E-69 T 19-04-2016 AMF_RS08845 ea661db1f386a9706b68b7af6652042a 301 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 19 301 18.682 T 19-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 AMF_RS08845 ea661db1f386a9706b68b7af6652042a 301 Pfam PF01040 UbiA prenyltransferase family 35 281 2.1E-52 T 19-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 AMF_RS08845 ea661db1f386a9706b68b7af6652042a 301 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 73 95 - T 19-04-2016 IPR030470 UbiA prenyltransferase conserved site AMF_RS06740 d8227507e3eb2f5d9b932f00e0ee56a7 187 PANTHER PTHR10884 44 183 6.4E-72 T 19-04-2016 AMF_RS06740 d8227507e3eb2f5d9b932f00e0ee56a7 187 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 32 151 6.2E-40 T 19-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 AMF_RS06740 d8227507e3eb2f5d9b932f00e0ee56a7 187 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 111 132 - T 19-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 AMF_RS06740 d8227507e3eb2f5d9b932f00e0ee56a7 187 SUPERFAMILY SSF143243 5 183 6.15E-53 T 19-04-2016 AMF_RS06740 d8227507e3eb2f5d9b932f00e0ee56a7 187 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 79 137 1.0E-29 T 19-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 AMF_RS06740 d8227507e3eb2f5d9b932f00e0ee56a7 187 PANTHER PTHR10884:SF10 44 183 6.4E-72 T 19-04-2016 AMF_RS06740 d8227507e3eb2f5d9b932f00e0ee56a7 187 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 1 158 28.956 T 19-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 AMF_RS06740 d8227507e3eb2f5d9b932f00e0ee56a7 187 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 32 150 2.3E-42 T 19-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 AMF_RS06530 09f16be0d25e0d6e27f94c3ff9d740ab 245 SUPERFAMILY SSF52540 23 237 2.92E-50 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06530 09f16be0d25e0d6e27f94c3ff9d740ab 245 PANTHER PTHR24220 28 234 9.1E-57 T 19-04-2016 AMF_RS06530 09f16be0d25e0d6e27f94c3ff9d740ab 245 Pfam PF00005 ABC transporter 43 172 3.7E-23 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_RS06530 09f16be0d25e0d6e27f94c3ff9d740ab 245 Gene3D G3DSA:3.40.50.300 29 235 9.8E-49 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06530 09f16be0d25e0d6e27f94c3ff9d740ab 245 SMART SM00382 51 223 3.0E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS05665 7142d933bd2f8d8534c39150a37ab9d8 109 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 17.04 T 19-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS05665 7142d933bd2f8d8534c39150a37ab9d8 109 Gene3D G3DSA:3.30.70.60 3 104 2.6E-28 T 19-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AMF_RS05665 7142d933bd2f8d8534c39150a37ab9d8 109 PANTHER PTHR21011 2 94 2.1E-18 T 19-04-2016 AMF_RS05665 7142d933bd2f8d8534c39150a37ab9d8 109 Pfam PF01250 Ribosomal protein S6 4 92 1.1E-21 T 19-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS05665 7142d933bd2f8d8534c39150a37ab9d8 109 TIGRFAM TIGR00166 S6: ribosomal protein bS6 4 94 6.0E-18 T 19-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS05665 7142d933bd2f8d8534c39150a37ab9d8 109 SUPERFAMILY SSF54995 2 104 2.22E-28 T 19-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 Gene3D G3DSA:3.40.50.10490 442 604 1.7E-52 T 19-04-2016 AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 Gene3D G3DSA:3.40.50.10490 245 437 1.3E-52 T 19-04-2016 AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 Gene3D G3DSA:3.60.20.10 2 228 2.0E-64 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 SUPERFAMILY SSF56235 2 233 2.92E-59 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 PANTHER PTHR10937:SF0 1 604 5.9E-232 T 19-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 SUPERFAMILY SSF53697 245 604 1.02E-91 T 19-04-2016 AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 604 1.4E-199 T 19-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 PANTHER PTHR10937 1 604 5.9E-232 T 19-04-2016 AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 Pfam PF01380 SIS domain 458 585 2.5E-20 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 Pfam PF01380 SIS domain 291 409 3.6E-27 T 19-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 AMF_RS08865 6a524e4ca49506916d6ad4ff79f54c8d 604 Pfam PF13522 Glutamine amidotransferase domain 61 168 2.3E-18 T 19-04-2016 AMF_RS07875 e67e9826e2a46112878e311ceaf5d921 205 Pfam PF01926 50S ribosome-binding GTPase 24 142 7.1E-21 T 19-04-2016 IPR006073 GTP binding domain GO:0005525 AMF_RS07875 e67e9826e2a46112878e311ceaf5d921 205 Gene3D G3DSA:3.40.50.300 12 195 1.4E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07875 e67e9826e2a46112878e311ceaf5d921 205 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 9 194 24.027 T 19-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 AMF_RS07875 e67e9826e2a46112878e311ceaf5d921 205 PANTHER PTHR11649 18 198 5.6E-42 T 19-04-2016 AMF_RS07875 e67e9826e2a46112878e311ceaf5d921 205 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 6 190 3.1E-62 T 19-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 AMF_RS07875 e67e9826e2a46112878e311ceaf5d921 205 SUPERFAMILY SSF52540 11 196 5.05E-33 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 307 621 8.9E-66 T 19-04-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 Pfam PF01578 Cytochrome C assembly protein 83 287 1.0E-35 T 19-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PANTHER PTHR30009:SF0 2 410 2.9E-150 T 19-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PANTHER PTHR30009:SF0 455 639 2.9E-150 T 19-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PANTHER PTHR30009 2 410 2.9E-150 T 19-04-2016 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PANTHER PTHR30009 455 639 2.9E-150 T 19-04-2016 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 236 256 2.1E-64 T 19-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 266 286 2.1E-64 T 19-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 151 173 2.1E-64 T 19-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 202 228 2.1E-64 T 19-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 74 100 2.1E-64 T 19-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 302 321 2.1E-64 T 19-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 124 141 2.1E-64 T 19-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09400 ec92c37fcec9a65fdc3cfe0fad95931c 640 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 286 302 2.1E-64 T 19-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 ProSitePatterns PS01244 Aconitase family signature 2. 475 488 - T 19-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 ProSitePatterns PS00450 Aconitase family signature 1. 409 425 - T 19-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 21 869 0.0 T 19-04-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PRINTS PR00415 Aconitase family signature 170 178 3.9E-37 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PRINTS PR00415 Aconitase family signature 475 488 3.9E-37 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PRINTS PR00415 Aconitase family signature 199 212 3.9E-37 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PRINTS PR00415 Aconitase family signature 289 302 3.9E-37 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PRINTS PR00415 Aconitase family signature 146 159 3.9E-37 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PRINTS PR00415 Aconitase family signature 368 382 3.9E-37 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PRINTS PR00415 Aconitase family signature 413 424 3.9E-37 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PRINTS PR00415 Aconitase family signature 213 228 3.9E-37 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PRINTS PR00415 Aconitase family signature 275 288 3.9E-37 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 Gene3D G3DSA:3.20.19.10 620 868 4.3E-64 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 Gene3D G3DSA:3.30.499.10 365 556 1.9E-58 T 19-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PANTHER PTHR11670 8 633 0.0 T 19-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PANTHER PTHR11670 651 696 0.0 T 19-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PANTHER PTHR11670:SF1 8 633 0.0 T 19-04-2016 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PANTHER PTHR11670 735 873 0.0 T 19-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 Pfam PF00694 Aconitase C-terminal domain 676 803 1.4E-41 T 19-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 SUPERFAMILY SSF53732 5 608 5.62E-212 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 Gene3D G3DSA:3.40.1060.10 247 363 6.8E-34 T 19-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PANTHER PTHR11670:SF1 735 873 0.0 T 19-04-2016 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 PANTHER PTHR11670:SF1 651 696 0.0 T 19-04-2016 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 SUPERFAMILY SSF52016 613 868 7.65E-73 T 19-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 Pfam PF00330 Aconitase family (aconitate hydratase) 78 544 4.7E-173 T 19-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS08940 5949548c2ed9dd35f849e6f4339ad697 878 Gene3D G3DSA:3.30.499.10 33 245 6.7E-73 T 19-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 AMF_RS06845 4e72b1469cab891e3ed4a1253d24d7aa 324 PANTHER PTHR23409 12 319 1.0E-57 T 19-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 AMF_RS06845 4e72b1469cab891e3ed4a1253d24d7aa 324 Pfam PF00268 Ribonucleotide reductase, small chain 9 284 3.1E-71 T 19-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 AMF_RS06845 4e72b1469cab891e3ed4a1253d24d7aa 324 PANTHER PTHR23409:SF18 12 319 1.0E-57 T 19-04-2016 AMF_RS06845 4e72b1469cab891e3ed4a1253d24d7aa 324 Gene3D G3DSA:1.10.620.20 8 292 5.1E-96 T 19-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 AMF_RS06845 4e72b1469cab891e3ed4a1253d24d7aa 324 PIRSF PIRSF000355 2 320 1.2E-102 T 19-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 AMF_RS06845 4e72b1469cab891e3ed4a1253d24d7aa 324 SUPERFAMILY SSF47240 10 321 4.54E-87 T 19-04-2016 IPR009078 Ferritin-like superfamily AMF_RS05340 c0edb31d11dbaa59f567fcc2819c5ccd 103 Pfam PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 18 91 8.8E-13 T 19-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 AMF_RS05340 c0edb31d11dbaa59f567fcc2819c5ccd 103 PANTHER PTHR12910 21 90 4.1E-13 T 19-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 AMF_RS05500 7e93ed089b31799834aebb9d4958eefd 440 Gene3D G3DSA:2.70.70.10 261 405 7.1E-47 T 19-04-2016 AMF_RS05500 7e93ed089b31799834aebb9d4958eefd 440 SUPERFAMILY SSF51261 160 404 7.32E-58 T 19-04-2016 IPR011055 Duplicated hybrid motif AMF_RS05500 7e93ed089b31799834aebb9d4958eefd 440 Pfam PF01551 Peptidase family M23 306 402 4.0E-31 T 19-04-2016 IPR016047 Peptidase M23 AMF_RS05500 7e93ed089b31799834aebb9d4958eefd 440 PANTHER PTHR21666 287 405 8.9E-41 T 19-04-2016 AMF_RS06425 602f36ba4f2b9de7d5e9b78216bd6bb9 648 PANTHER PTHR11070 7 635 1.4E-187 T 19-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 AMF_RS06425 602f36ba4f2b9de7d5e9b78216bd6bb9 648 Gene3D G3DSA:3.40.50.300 543 636 4.6E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06425 602f36ba4f2b9de7d5e9b78216bd6bb9 648 Gene3D G3DSA:3.40.50.300 284 388 4.6E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06425 602f36ba4f2b9de7d5e9b78216bd6bb9 648 Gene3D G3DSA:1.10.486.10 389 532 8.0E-40 T 19-04-2016 AMF_RS06425 602f36ba4f2b9de7d5e9b78216bd6bb9 648 Pfam PF00580 UvrD/REP helicase N-terminal domain 14 274 1.2E-67 T 19-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 AMF_RS06425 602f36ba4f2b9de7d5e9b78216bd6bb9 648 Gene3D G3DSA:3.40.50.300 13 279 6.1E-78 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06425 602f36ba4f2b9de7d5e9b78216bd6bb9 648 SUPERFAMILY SSF52540 7 635 2.98E-159 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06425 602f36ba4f2b9de7d5e9b78216bd6bb9 648 PANTHER PTHR11070:SF7 7 635 1.4E-187 T 19-04-2016 AMF_RS06425 602f36ba4f2b9de7d5e9b78216bd6bb9 648 Pfam PF13361 UvrD-like helicase C-terminal domain 281 607 1.5E-63 T 19-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMF_RS05480 d62078eef4b9de2332519fbd97c06cd8 217 PANTHER PTHR10721 76 204 1.2E-16 T 19-04-2016 AMF_RS05480 d62078eef4b9de2332519fbd97c06cd8 217 SUPERFAMILY SSF54427 60 215 6.13E-40 T 19-04-2016 IPR032710 NTF2-like domain AMF_RS05480 d62078eef4b9de2332519fbd97c06cd8 217 Pfam PF04280 Tim44-like domain 72 216 2.0E-38 T 19-04-2016 IPR007379 Tim44-like domain AMF_RS05480 d62078eef4b9de2332519fbd97c06cd8 217 SMART SM00978 71 217 5.0E-45 T 19-04-2016 IPR007379 Tim44-like domain AMF_RS05480 d62078eef4b9de2332519fbd97c06cd8 217 ProDom PD111165 RP434 53 214 8.0E-4 T 19-04-2016 AMF_RS05480 d62078eef4b9de2332519fbd97c06cd8 217 PANTHER PTHR10721:SF2 76 204 1.2E-16 T 19-04-2016 AMF_RS05480 d62078eef4b9de2332519fbd97c06cd8 217 PIRSF PIRSF031890 1 217 3.3E-73 T 19-04-2016 IPR016985 Uncharacterised conserved protein UCP031890, Tim44-related AMF_RS05550 7bbdccd4928ed6fddecc3f0f6d921ebc 229 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 5 229 34.934 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMF_RS05550 7bbdccd4928ed6fddecc3f0f6d921ebc 229 Pfam PF01255 Putative undecaprenyl diphosphate synthase 12 228 9.8E-72 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMF_RS05550 7bbdccd4928ed6fddecc3f0f6d921ebc 229 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 5 228 2.7E-74 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMF_RS05550 7bbdccd4928ed6fddecc3f0f6d921ebc 229 Gene3D G3DSA:3.40.1180.10 3 229 1.0E-79 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMF_RS05550 7bbdccd4928ed6fddecc3f0f6d921ebc 229 SUPERFAMILY SSF64005 3 223 3.01E-74 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMF_RS05550 7bbdccd4928ed6fddecc3f0f6d921ebc 229 PANTHER PTHR10291 5 229 2.5E-93 T 19-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 AMF_RS08450 60d13397b7fd982ed38af833dc6c384c 112 SUPERFAMILY SSF54843 3 109 1.26E-34 T 19-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMF_RS08450 60d13397b7fd982ed38af833dc6c384c 112 Gene3D G3DSA:3.90.470.10 6 109 2.1E-32 T 19-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMF_RS08450 60d13397b7fd982ed38af833dc6c384c 112 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 11 107 1.8E-30 T 19-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 AMF_RS08450 60d13397b7fd982ed38af833dc6c384c 112 Pfam PF00237 Ribosomal protein L22p/L17e 11 109 1.1E-26 T 19-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMF_RS08450 60d13397b7fd982ed38af833dc6c384c 112 PANTHER PTHR13501 5 109 4.0E-30 T 19-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 AMF_RS08450 60d13397b7fd982ed38af833dc6c384c 112 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 3 112 23.567 T 19-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 AMF_RS08935 cbb864b21136bb33387abc6b778bc5b3 106 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 29 100 3.5E-10 T 19-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMF_RS08935 cbb864b21136bb33387abc6b778bc5b3 106 SUPERFAMILY SSF141000 12 104 7.98E-16 T 19-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMF_RS09180 32ddc177ed3c0dddf974feab3e0b98ed 697 PANTHER PTHR14136:SF0 128 417 5.6E-31 T 19-04-2016 AMF_RS09180 32ddc177ed3c0dddf974feab3e0b98ed 697 Pfam PF00805 Pentapeptide repeats (8 copies) 234 273 6.7E-8 T 19-04-2016 IPR001646 Pentapeptide repeat AMF_RS09180 32ddc177ed3c0dddf974feab3e0b98ed 697 Pfam PF00805 Pentapeptide repeats (8 copies) 279 313 8.8E-8 T 19-04-2016 IPR001646 Pentapeptide repeat AMF_RS09180 32ddc177ed3c0dddf974feab3e0b98ed 697 SUPERFAMILY SSF141571 236 386 8.41E-28 T 19-04-2016 AMF_RS09180 32ddc177ed3c0dddf974feab3e0b98ed 697 SUPERFAMILY SSF141571 87 248 6.8E-32 T 19-04-2016 AMF_RS09180 32ddc177ed3c0dddf974feab3e0b98ed 697 SUPERFAMILY SSF141571 537 605 1.02E-26 T 19-04-2016 AMF_RS09180 32ddc177ed3c0dddf974feab3e0b98ed 697 SUPERFAMILY SSF141571 400 497 1.02E-26 T 19-04-2016 AMF_RS09180 32ddc177ed3c0dddf974feab3e0b98ed 697 PANTHER PTHR14136 128 417 5.6E-31 T 19-04-2016 AMF_RS09180 32ddc177ed3c0dddf974feab3e0b98ed 697 Pfam PF13599 Pentapeptide repeats (9 copies) 88 156 1.7E-11 T 19-04-2016 IPR001646 Pentapeptide repeat AMF_RS09180 32ddc177ed3c0dddf974feab3e0b98ed 697 Pfam PF13599 Pentapeptide repeats (9 copies) 540 606 1.8E-13 T 19-04-2016 IPR001646 Pentapeptide repeat AMF_RS09890 ae74eb027aa9b64fb4de458cbb404d50 346 Gene3D G3DSA:3.20.20.210 6 346 3.1E-102 T 19-04-2016 AMF_RS09890 ae74eb027aa9b64fb4de458cbb404d50 346 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 17 344 2.5E-91 T 19-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS09890 ae74eb027aa9b64fb4de458cbb404d50 346 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 7 346 40.079 T 19-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS09890 ae74eb027aa9b64fb4de458cbb404d50 346 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 17 344 7.6E-102 T 19-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS09890 ae74eb027aa9b64fb4de458cbb404d50 346 PANTHER PTHR21091 9 346 5.8E-89 T 19-04-2016 AMF_RS09890 ae74eb027aa9b64fb4de458cbb404d50 346 PANTHER PTHR21091:SF2 9 346 5.8E-89 T 19-04-2016 AMF_RS09890 ae74eb027aa9b64fb4de458cbb404d50 346 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 25 34 - T 19-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 AMF_RS09890 ae74eb027aa9b64fb4de458cbb404d50 346 SUPERFAMILY SSF51726 16 345 1.06E-80 T 19-04-2016 AMF_RS09550 b6a5a7adb04cc2de801cb6229aa4f707 239 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 32 45 - T 19-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMF_RS09550 b6a5a7adb04cc2de801cb6229aa4f707 239 PANTHER PTHR24220:SF567 5 236 2.4E-88 T 19-04-2016 AMF_RS09550 b6a5a7adb04cc2de801cb6229aa4f707 239 Gene3D G3DSA:3.40.50.300 3 234 1.0E-70 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09550 b6a5a7adb04cc2de801cb6229aa4f707 239 SMART SM00382 28 213 1.1E-12 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS09550 b6a5a7adb04cc2de801cb6229aa4f707 239 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_RS09550 b6a5a7adb04cc2de801cb6229aa4f707 239 PANTHER PTHR24220 5 236 2.4E-88 T 19-04-2016 AMF_RS09550 b6a5a7adb04cc2de801cb6229aa4f707 239 Pfam PF00005 ABC transporter 19 164 9.2E-34 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_RS09550 b6a5a7adb04cc2de801cb6229aa4f707 239 SUPERFAMILY SSF52540 4 227 5.45E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06570 74d100dd88e4667712d1692194820136 301 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 287 9.2E-93 T 19-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS06570 74d100dd88e4667712d1692194820136 301 PANTHER PTHR12128:SF34 1 301 3.1E-110 T 19-04-2016 AMF_RS06570 74d100dd88e4667712d1692194820136 301 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 39 56 - T 19-04-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS06570 74d100dd88e4667712d1692194820136 301 PIRSF PIRSF001365 1 299 2.7E-89 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMF_RS06570 74d100dd88e4667712d1692194820136 301 Gene3D G3DSA:3.20.20.70 1 291 2.0E-104 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS06570 74d100dd88e4667712d1692194820136 301 SMART SM01130 2 289 7.1E-123 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMF_RS06570 74d100dd88e4667712d1692194820136 301 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 2 287 58.209 T 19-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS06570 74d100dd88e4667712d1692194820136 301 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 134 164 - T 19-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 AMF_RS06570 74d100dd88e4667712d1692194820136 301 Pfam PF00701 Dihydrodipicolinate synthetase family 2 286 9.5E-80 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMF_RS06570 74d100dd88e4667712d1692194820136 301 PANTHER PTHR12128 1 301 3.1E-110 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMF_RS06570 74d100dd88e4667712d1692194820136 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 9.3E-29 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMF_RS06570 74d100dd88e4667712d1692194820136 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 9.3E-29 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMF_RS06570 74d100dd88e4667712d1692194820136 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 9.3E-29 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMF_RS06570 74d100dd88e4667712d1692194820136 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 9.3E-29 T 19-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 AMF_RS06570 74d100dd88e4667712d1692194820136 301 SUPERFAMILY SSF51569 1 289 9.84E-93 T 19-04-2016 AMF_RS05150 b31cd35e57380fedb38c85ea633b5e09 224 PANTHER PTHR24220 6 223 8.2E-78 T 19-04-2016 AMF_RS05150 b31cd35e57380fedb38c85ea633b5e09 224 SUPERFAMILY SSF52540 4 223 9.55E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05150 b31cd35e57380fedb38c85ea633b5e09 224 Gene3D G3DSA:3.40.50.300 3 223 7.6E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05150 b31cd35e57380fedb38c85ea633b5e09 224 SMART SM00382 32 218 1.8E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS05150 b31cd35e57380fedb38c85ea633b5e09 224 PANTHER PTHR24220:SF111 6 223 8.2E-78 T 19-04-2016 AMF_RS05150 b31cd35e57380fedb38c85ea633b5e09 224 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_RS05150 b31cd35e57380fedb38c85ea633b5e09 224 Pfam PF00005 ABC transporter 23 171 1.7E-30 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_RS09460 8e5d21483b1f8baafd3d9c1fadeb32c7 349 SUPERFAMILY SSF52540 4 203 1.86E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09460 8e5d21483b1f8baafd3d9c1fadeb32c7 349 Gene3D G3DSA:3.40.50.300 19 124 9.6E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09460 8e5d21483b1f8baafd3d9c1fadeb32c7 349 Gene3D G3DSA:1.10.8.60 145 224 3.5E-4 T 19-04-2016 AMF_RS09460 8e5d21483b1f8baafd3d9c1fadeb32c7 349 PANTHER PTHR34388 1 340 9.0E-17 T 19-04-2016 AMF_RS09460 8e5d21483b1f8baafd3d9c1fadeb32c7 349 SUPERFAMILY SSF48019 216 330 1.79E-8 T 19-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 AMF_RS09460 8e5d21483b1f8baafd3d9c1fadeb32c7 349 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 22 329 1.2E-27 T 19-04-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 AMF_RS08415 b6fe9bde8682943bb6f63b2f8016442c 177 PANTHER PTHR11994 7 175 1.4E-72 T 19-04-2016 AMF_RS08415 b6fe9bde8682943bb6f63b2f8016442c 177 Gene3D G3DSA:3.30.1440.10 7 175 2.9E-65 T 19-04-2016 IPR022803 Ribosomal protein L5 domain AMF_RS08415 b6fe9bde8682943bb6f63b2f8016442c 177 Pfam PF00673 ribosomal L5P family C-terminus 82 175 2.4E-38 T 19-04-2016 IPR031309 Ribosomal protein L5, C-terminal AMF_RS08415 b6fe9bde8682943bb6f63b2f8016442c 177 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 177 36.699 T 19-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08415 b6fe9bde8682943bb6f63b2f8016442c 177 SUPERFAMILY SSF55282 7 176 8.48E-67 T 19-04-2016 IPR022803 Ribosomal protein L5 domain AMF_RS08415 b6fe9bde8682943bb6f63b2f8016442c 177 Pfam PF00281 Ribosomal protein L5 22 78 2.0E-21 T 19-04-2016 IPR031310 Ribosomal protein L5, N-terminal AMF_RS08415 b6fe9bde8682943bb6f63b2f8016442c 177 PIRSF PIRSF002161 2 177 5.9E-57 T 19-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 1.4E-23 T 19-04-2016 IPR000362 Fumarate lyase family AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 PRINTS PR00149 Fumarate lyase superfamily signature 217 244 1.4E-23 T 19-04-2016 IPR000362 Fumarate lyase family AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 PRINTS PR00149 Fumarate lyase superfamily signature 89 107 1.4E-23 T 19-04-2016 IPR000362 Fumarate lyase family AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 PRINTS PR00149 Fumarate lyase superfamily signature 262 278 1.4E-23 T 19-04-2016 IPR000362 Fumarate lyase family AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 SMART SM00998 350 429 1.4E-25 T 19-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 SUPERFAMILY SSF48557 3 428 1.24E-116 T 19-04-2016 IPR008948 L-Aspartase-like GO:0003824 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 ProSitePatterns PS00163 Fumarate lyases signature. 262 271 - T 19-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 2 427 7.1E-137 T 19-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 PANTHER PTHR11444:SF2 3 424 5.7E-127 T 19-04-2016 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 Pfam PF10397 Adenylosuccinate lyase C-terminus 351 426 2.1E-19 T 19-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 Pfam PF00206 Lyase 8 285 4.7E-45 T 19-04-2016 IPR022761 Fumarate lyase, N-terminal AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 Gene3D G3DSA:1.10.40.30 358 428 3.3E-24 T 19-04-2016 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 PRINTS PR00145 Argininosuccinate lyase family signature 217 241 5.5E-7 T 19-04-2016 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 PRINTS PR00145 Argininosuccinate lyase family signature 262 278 5.5E-7 T 19-04-2016 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 PRINTS PR00145 Argininosuccinate lyase family signature 129 149 5.5E-7 T 19-04-2016 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 PRINTS PR00145 Argininosuccinate lyase family signature 88 110 5.5E-7 T 19-04-2016 AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 PANTHER PTHR11444 3 424 5.7E-127 T 19-04-2016 IPR000362 Fumarate lyase family AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 Gene3D G3DSA:1.10.275.10 2 91 8.8E-24 T 19-04-2016 IPR024083 Fumarase/histidase, N-terminal AMF_RS06470 179a936d2e14faa85ae6ecae1b129f2b 434 Gene3D G3DSA:1.20.200.10 92 357 2.0E-77 T 19-04-2016 AMF_RS06705 e27f0a38b2ce707190dde6b8b66eb506 128 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 11.05 T 19-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06705 e27f0a38b2ce707190dde6b8b66eb506 128 Pfam PF01192 RNA polymerase Rpb6 14 55 1.1E-7 T 19-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06705 e27f0a38b2ce707190dde6b8b66eb506 128 SUPERFAMILY SSF63562 14 77 1.92E-12 T 19-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06705 e27f0a38b2ce707190dde6b8b66eb506 128 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 14 53 1.1E-6 T 19-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06705 e27f0a38b2ce707190dde6b8b66eb506 128 Gene3D G3DSA:3.90.940.10 15 62 5.4E-7 T 19-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS06705 e27f0a38b2ce707190dde6b8b66eb506 128 SMART SM01409 10 60 1.2E-6 T 19-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMF_RS10125 6cfd24b57d588055a36f34ae533d008a 231 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2 226 6.2E-47 T 19-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 AMF_RS10125 6cfd24b57d588055a36f34ae533d008a 231 PANTHER PTHR32125:SF4 1 226 9.7E-39 T 19-04-2016 AMF_RS10125 6cfd24b57d588055a36f34ae533d008a 231 PANTHER PTHR32125 1 226 9.7E-39 T 19-04-2016 AMF_RS10125 6cfd24b57d588055a36f34ae533d008a 231 SUPERFAMILY SSF53448 2 226 2.02E-43 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMF_RS10125 6cfd24b57d588055a36f34ae533d008a 231 Gene3D G3DSA:3.90.550.10 2 225 2.0E-50 T 19-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases AMF_RS05635 7a19430fd3c1527e8621b8cfbfa3865f 110 PANTHER PTHR10293 1 108 6.0E-56 T 19-04-2016 IPR004480 Monothiol glutaredoxin-related AMF_RS05635 7a19430fd3c1527e8621b8cfbfa3865f 110 PIRSF PIRSF005894 1 109 2.1E-48 T 19-04-2016 IPR014434 Monothiol glutaredoxin AMF_RS05635 7a19430fd3c1527e8621b8cfbfa3865f 110 Pfam PF00462 Glutaredoxin 19 83 1.7E-18 T 19-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMF_RS05635 7a19430fd3c1527e8621b8cfbfa3865f 110 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 7 103 2.1E-45 T 19-04-2016 IPR004480 Monothiol glutaredoxin-related AMF_RS05635 7a19430fd3c1527e8621b8cfbfa3865f 110 SUPERFAMILY SSF52833 6 107 1.43E-34 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05635 7a19430fd3c1527e8621b8cfbfa3865f 110 Gene3D G3DSA:3.40.30.10 10 103 2.8E-33 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS06630 3f5d1548f826d504fcdce8df54034f16 168 Gene3D G3DSA:2.40.50.140 5 168 1.2E-43 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS06630 3f5d1548f826d504fcdce8df54034f16 168 PANTHER PTHR10302:SF0 5 106 4.0E-41 T 19-04-2016 AMF_RS06630 3f5d1548f826d504fcdce8df54034f16 168 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 5 168 3.4E-40 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMF_RS06630 3f5d1548f826d504fcdce8df54034f16 168 Hamap MF_00984 Single-stranded DNA-binding protein. 6 119 30.68 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMF_RS06630 3f5d1548f826d504fcdce8df54034f16 168 PANTHER PTHR10302 5 106 4.0E-41 T 19-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 AMF_RS06630 3f5d1548f826d504fcdce8df54034f16 168 SUPERFAMILY SSF50249 5 168 3.36E-42 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS06630 3f5d1548f826d504fcdce8df54034f16 168 Pfam PF00436 Single-strand binding protein family 6 106 3.3E-34 T 19-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 AMF_RS09715 ae3a5764d26b2f7a83aefc0506820913 331 Pfam PF01617 Surface antigen 95 329 1.2E-19 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS09715 ae3a5764d26b2f7a83aefc0506820913 331 SUPERFAMILY SSF56925 200 280 2.88E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09715 ae3a5764d26b2f7a83aefc0506820913 331 SUPERFAMILY SSF56925 111 142 2.88E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09715 ae3a5764d26b2f7a83aefc0506820913 331 Gene3D G3DSA:2.40.160.20 110 142 1.3E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09715 ae3a5764d26b2f7a83aefc0506820913 331 Gene3D G3DSA:2.40.160.20 200 276 1.3E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09715 ae3a5764d26b2f7a83aefc0506820913 331 Gene3D G3DSA:2.40.160.20 36 52 1.3E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 27 96 17.137 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 Gene3D G3DSA:4.10.640.10 21 95 3.3E-25 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 46 95 7.0E-21 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 PRINTS PR00974 Ribosomal protein S18 family signature 53 63 1.8E-15 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 PRINTS PR00974 Ribosomal protein S18 family signature 71 85 1.8E-15 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 PRINTS PR00974 Ribosomal protein S18 family signature 63 70 1.8E-15 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 PRINTS PR00974 Ribosomal protein S18 family signature 85 95 1.8E-15 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 Pfam PF01084 Ribosomal protein S18 44 93 2.5E-21 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 TIGRFAM TIGR00165 S18: ribosomal protein bS18 29 95 5.1E-23 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 PANTHER PTHR13479 28 95 8.0E-21 T 19-04-2016 AMF_RS05670 45496dfde8c308dc0d6d7d5539dca674 96 SUPERFAMILY SSF46911 25 96 1.7E-23 T 19-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08945 f0fd24fb266a543cec096658d895812a 135 Hamap MF_00791 Protein ApaG [apaG]. 6 135 28.216 T 19-04-2016 IPR023065 Uncharacterised protein family ApaG AMF_RS08945 f0fd24fb266a543cec096658d895812a 135 PANTHER PTHR14289 13 131 8.9E-42 T 19-04-2016 AMF_RS08945 f0fd24fb266a543cec096658d895812a 135 SUPERFAMILY SSF110069 10 132 3.27E-44 T 19-04-2016 IPR007474 ApaG domain AMF_RS08945 f0fd24fb266a543cec096658d895812a 135 Pfam PF04379 Protein of unknown function (DUF525) 24 108 1.0E-31 T 19-04-2016 IPR007474 ApaG domain AMF_RS08945 f0fd24fb266a543cec096658d895812a 135 Gene3D G3DSA:2.60.40.1470 10 129 8.3E-43 T 19-04-2016 IPR007474 ApaG domain AMF_RS05570 81cdb188de390628a15f19bd6cf0da37 242 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 5 238 29.123 T 19-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMF_RS05570 81cdb188de390628a15f19bd6cf0da37 242 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 1 210 2.8E-61 T 19-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMF_RS05570 81cdb188de390628a15f19bd6cf0da37 242 PANTHER PTHR11609:SF2 4 240 3.3E-102 T 19-04-2016 AMF_RS05570 81cdb188de390628a15f19bd6cf0da37 242 ProSitePatterns PS01058 SAICAR synthetase signature 2. 174 182 - T 19-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMF_RS05570 81cdb188de390628a15f19bd6cf0da37 242 Gene3D G3DSA:3.30.470.20 95 223 2.9E-46 T 19-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 AMF_RS05570 81cdb188de390628a15f19bd6cf0da37 242 Gene3D G3DSA:3.30.200.20 8 94 5.2E-35 T 19-04-2016 AMF_RS05570 81cdb188de390628a15f19bd6cf0da37 242 Pfam PF01259 SAICAR synthetase 7 235 3.2E-57 T 19-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 AMF_RS05570 81cdb188de390628a15f19bd6cf0da37 242 PANTHER PTHR11609 4 240 3.3E-102 T 19-04-2016 AMF_RS05570 81cdb188de390628a15f19bd6cf0da37 242 SUPERFAMILY SSF56104 5 236 3.6E-75 T 19-04-2016 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 147 157 5.5E-17 T 19-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 164 172 5.5E-17 T 19-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 85 92 5.5E-17 T 19-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 98 113 5.5E-17 T 19-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 114 124 5.5E-17 T 19-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 PRINTS PR00604 Class IA and IB cytochrome C signature 128 144 5.5E-17 T 19-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 Gene3D G3DSA:1.10.760.10 74 176 2.7E-34 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 PANTHER PTHR11961 64 179 3.2E-34 T 19-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 SUPERFAMILY SSF46626 73 175 1.11E-29 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 Pfam PF00034 Cytochrome c 77 174 3.9E-8 T 19-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 AMF_RS05775 bb43115aa30768e80661f182ba49b94d 179 PANTHER PTHR11961:SF6 64 179 3.2E-34 T 19-04-2016 AMF_RS06555 acdc2ba4a68ffb6dd00f1eeeb896f33a 276 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 1 161 7.5E-37 T 19-04-2016 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal AMF_RS06555 acdc2ba4a68ffb6dd00f1eeeb896f33a 276 Pfam PF09356 Phage conserved hypothetical protein BR0599 191 266 2.3E-26 T 19-04-2016 IPR018964 Bacteriophage phiJL001, Gp84, C-terminal AMF_RS06555 acdc2ba4a68ffb6dd00f1eeeb896f33a 276 TIGRFAM TIGR02218 phg_TIGR02218: phage conserved hypothetical protein BR0599 34 268 8.3E-56 T 19-04-2016 IPR011928 Bacteriophage phiJL001, Gp84 AMF_RS07515 43c8234290c874731e9c22d53aa49836 133 SUPERFAMILY SSF82649 2 126 8.89E-46 T 19-04-2016 AMF_RS07515 43c8234290c874731e9c22d53aa49836 133 PANTHER PTHR10093 1 132 2.0E-76 T 19-04-2016 AMF_RS07515 43c8234290c874731e9c22d53aa49836 133 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 126 1.2E-63 T 19-04-2016 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 AMF_RS07515 43c8234290c874731e9c22d53aa49836 133 Pfam PF01592 NifU-like N terminal domain 3 126 1.2E-49 T 19-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 AMF_RS07515 43c8234290c874731e9c22d53aa49836 133 Gene3D G3DSA:3.90.1010.10 2 126 1.3E-51 T 19-04-2016 AMF_RS08560 9220b3826bd887cc6fafea62d4b66098 298 SMART SM00244 72 234 6.3E-17 T 19-04-2016 IPR001107 Band 7 domain AMF_RS08560 9220b3826bd887cc6fafea62d4b66098 298 PANTHER PTHR10264:SF46 56 271 2.9E-52 T 19-04-2016 AMF_RS08560 9220b3826bd887cc6fafea62d4b66098 298 PANTHER PTHR10264 56 271 2.9E-52 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMF_RS08560 9220b3826bd887cc6fafea62d4b66098 298 Pfam PF01145 SPFH domain / Band 7 family 79 246 4.9E-22 T 19-04-2016 IPR001107 Band 7 domain AMF_RS08560 9220b3826bd887cc6fafea62d4b66098 298 SUPERFAMILY SSF117892 110 238 5.23E-15 T 19-04-2016 IPR001107 Band 7 domain AMF_RS06675 5ec2dd990c0472f2eb4a28f6bf95bb97 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.2E-19 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMF_RS06675 5ec2dd990c0472f2eb4a28f6bf95bb97 91 SUPERFAMILY SSF47729 1 90 6.48E-19 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMF_RS06675 5ec2dd990c0472f2eb4a28f6bf95bb97 91 Gene3D G3DSA:4.10.520.10 1 90 4.8E-18 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMF_RS06675 5ec2dd990c0472f2eb4a28f6bf95bb97 91 SMART SM00411 1 90 3.7E-5 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMF_RS06665 9dad1894c35eb156737c42a3f3f0f60b 234 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 57 115 2.2E-8 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMF_RS06665 9dad1894c35eb156737c42a3f3f0f60b 234 Pfam PF01467 Cytidylyltransferase-like 59 230 2.8E-20 T 19-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMF_RS06665 9dad1894c35eb156737c42a3f3f0f60b 234 SUPERFAMILY SSF52374 56 231 3.0E-36 T 19-04-2016 AMF_RS06665 9dad1894c35eb156737c42a3f3f0f60b 234 Gene3D G3DSA:3.40.50.620 57 231 8.6E-37 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS06665 9dad1894c35eb156737c42a3f3f0f60b 234 PANTHER PTHR39321 52 196 4.7E-24 T 19-04-2016 AMF_RS08240 8df8d594c505751a3188bdfb91c038dc 286 SUPERFAMILY SSF48576 10 268 1.94E-64 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMF_RS08240 8df8d594c505751a3188bdfb91c038dc 286 PANTHER PTHR12001 4 235 2.1E-67 T 19-04-2016 IPR017446 Polyprenyl synthetase-related AMF_RS08240 8df8d594c505751a3188bdfb91c038dc 286 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 87 103 - T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMF_RS08240 8df8d594c505751a3188bdfb91c038dc 286 PANTHER PTHR12001:SF23 4 235 2.1E-67 T 19-04-2016 AMF_RS08240 8df8d594c505751a3188bdfb91c038dc 286 Gene3D G3DSA:1.10.600.10 6 279 1.8E-72 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMF_RS08240 8df8d594c505751a3188bdfb91c038dc 286 Pfam PF00348 Polyprenyl synthetase 37 234 2.5E-46 T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMF_RS07495 c1098c35cd19b175e9df07cb1a6dad8f 117 PANTHER PTHR23426 3 110 1.2E-50 T 19-04-2016 AMF_RS07495 c1098c35cd19b175e9df07cb1a6dad8f 117 PRINTS PR00355 Adrenodoxin signature 84 92 4.8E-5 T 19-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 AMF_RS07495 c1098c35cd19b175e9df07cb1a6dad8f 117 PRINTS PR00355 Adrenodoxin signature 39 49 4.8E-5 T 19-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 AMF_RS07495 c1098c35cd19b175e9df07cb1a6dad8f 117 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 93 7.7E-13 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMF_RS07495 c1098c35cd19b175e9df07cb1a6dad8f 117 SUPERFAMILY SSF54292 1 104 5.77E-31 T 19-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMF_RS07495 c1098c35cd19b175e9df07cb1a6dad8f 117 Gene3D G3DSA:3.10.20.30 1 104 3.2E-41 T 19-04-2016 IPR012675 Beta-grasp domain AMF_RS07495 c1098c35cd19b175e9df07cb1a6dad8f 117 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 39 49 - T 19-04-2016 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 Gene3D G3DSA:3.40.50.2020 264 434 1.4E-41 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 SUPERFAMILY SSF53271 243 462 1.84E-69 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 Pfam PF00156 Phosphoribosyl transferase domain 281 380 6.5E-11 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 Gene3D G3DSA:3.60.20.10 10 251 1.4E-65 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 10 457 1.2E-139 T 19-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 PANTHER PTHR11907 7 459 4.7E-200 T 19-04-2016 AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 SUPERFAMILY SSF56235 10 247 7.03E-66 T 19-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 9 458 43.401 T 19-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 PIRSF PIRSF000485 6 464 7.7E-156 T 19-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 PANTHER PTHR11907:SF0 7 459 4.7E-200 T 19-04-2016 AMF_RS10035 aa71e814d5b28cdacefd878baefbf565 464 Pfam PF13537 Glutamine amidotransferase domain 80 205 2.4E-21 T 19-04-2016 IPR017932 Glutamine amidotransferase type 2 domain AMF_RS09170 d622da57014b02b31554e69084929c2d 674 Gene3D G3DSA:1.10.530.10 511 670 2.5E-41 T 19-04-2016 AMF_RS09170 d622da57014b02b31554e69084929c2d 674 SUPERFAMILY SSF53955 510 655 1.0E-37 T 19-04-2016 IPR023346 Lysozyme-like domain AMF_RS09170 d622da57014b02b31554e69084929c2d 674 PANTHER PTHR21666 496 655 7.4E-33 T 19-04-2016 AMF_RS09170 d622da57014b02b31554e69084929c2d 674 Gene3D G3DSA:1.25.20.10 369 415 9.9E-6 T 19-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 AMF_RS09170 d622da57014b02b31554e69084929c2d 674 SUPERFAMILY SSF48435 100 417 3.92E-16 T 19-04-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 AMF_RS09170 d622da57014b02b31554e69084929c2d 674 Pfam PF01464 Transglycosylase SLT domain 520 617 5.1E-27 T 19-04-2016 IPR008258 Transglycosylase SLT domain 1 AMF_RS05380 34e97426b628d80cbd2c5726cbfaa8ac 186 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 186 21.887 T 19-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS05380 34e97426b628d80cbd2c5726cbfaa8ac 186 PANTHER PTHR19278 1 143 2.3E-19 T 19-04-2016 AMF_RS05380 34e97426b628d80cbd2c5726cbfaa8ac 186 SUPERFAMILY SSF53271 4 143 5.64E-33 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMF_RS05380 34e97426b628d80cbd2c5726cbfaa8ac 186 Gene3D G3DSA:3.40.50.2020 2 174 3.3E-36 T 19-04-2016 IPR029057 Phosphoribosyltransferase-like AMF_RS05380 34e97426b628d80cbd2c5726cbfaa8ac 186 Pfam PF00156 Phosphoribosyl transferase domain 40 147 1.9E-13 T 19-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMF_RS05380 34e97426b628d80cbd2c5726cbfaa8ac 186 TIGRFAM TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase 6 183 1.7E-53 T 19-04-2016 IPR006273 Orotate phosphoribosyltransferase, bacterial GO:0004588|GO:0019856 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 AMF_RS10050 f9ca73fbf1d656c7872d986a028e14f9 83 Pfam PF04956 TrbC/VIRB2 family 10 80 2.9E-15 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS05530 c0a99aa433e51bc61c55494235797c05 154 Gene3D G3DSA:3.30.420.10 7 147 1.0E-55 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS05530 c0a99aa433e51bc61c55494235797c05 154 Pfam PF00075 RNase H 8 145 1.6E-46 T 19-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AMF_RS05530 c0a99aa433e51bc61c55494235797c05 154 PANTHER PTHR10642 7 150 1.3E-52 T 19-04-2016 AMF_RS05530 c0a99aa433e51bc61c55494235797c05 154 Hamap MF_00042 Ribonuclease H [rnhA]. 6 154 31.652 T 19-04-2016 IPR022892 Ribonuclease H GO:0004523 AMF_RS05530 c0a99aa433e51bc61c55494235797c05 154 SUPERFAMILY SSF53098 8 147 2.4E-53 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS09580 d04af3c2785627d533fe4786ec4bedef 371 Gene3D G3DSA:3.40.50.300 9 176 2.9E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09580 d04af3c2785627d533fe4786ec4bedef 371 Gene3D G3DSA:3.40.50.300 240 359 2.9E-29 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09580 d04af3c2785627d533fe4786ec4bedef 371 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 371 61.406 T 19-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMF_RS09580 d04af3c2785627d533fe4786ec4bedef 371 Pfam PF02463 RecF/RecN/SMC N terminal domain 9 356 4.1E-19 T 19-04-2016 IPR003395 RecF/RecN/SMC, N-terminal AMF_RS09580 d04af3c2785627d533fe4786ec4bedef 371 PANTHER PTHR32182 4 352 9.5E-19 T 19-04-2016 AMF_RS09580 d04af3c2785627d533fe4786ec4bedef 371 SUPERFAMILY SSF52540 268 361 1.5E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09580 d04af3c2785627d533fe4786ec4bedef 371 SUPERFAMILY SSF52540 9 230 1.5E-36 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09580 d04af3c2785627d533fe4786ec4bedef 371 PANTHER PTHR32182:SF0 4 352 9.5E-19 T 19-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMF_RS09580 d04af3c2785627d533fe4786ec4bedef 371 ProSitePatterns PS00618 RecF protein signature 2. 312 330 - T 19-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AMF_RS08205 d87c13970cba443649173be575873762 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 143 163 5.6E-14 T 19-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 AMF_RS08205 d87c13970cba443649173be575873762 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 443 461 5.6E-14 T 19-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 AMF_RS08205 d87c13970cba443649173be575873762 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 329 348 5.6E-14 T 19-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 AMF_RS08205 d87c13970cba443649173be575873762 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 375 392 5.6E-14 T 19-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 AMF_RS08205 d87c13970cba443649173be575873762 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 398 419 5.6E-14 T 19-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 AMF_RS08205 d87c13970cba443649173be575873762 494 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 241 260 5.6E-14 T 19-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 AMF_RS08205 d87c13970cba443649173be575873762 494 PANTHER PTHR34217 1 494 5.3E-66 T 19-04-2016 AMF_RS08205 d87c13970cba443649173be575873762 494 PIRSF PIRSF006615 1 494 4.1E-71 T 19-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 AMF_RS08205 d87c13970cba443649173be575873762 494 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 148 491 2.4E-28 T 19-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 AMF_RS08205 d87c13970cba443649173be575873762 494 SUPERFAMILY SSF55486 1 492 8.06E-53 T 19-04-2016 AMF_RS08470 59a73c5144f22f2dd8428d895ce702bc 208 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 202 2.8E-66 T 19-04-2016 IPR013005 50S ribosomal protein uL4 AMF_RS08470 59a73c5144f22f2dd8428d895ce702bc 208 PANTHER PTHR10746 1 205 5.2E-75 T 19-04-2016 IPR013005 50S ribosomal protein uL4 AMF_RS08470 59a73c5144f22f2dd8428d895ce702bc 208 Pfam PF00573 Ribosomal protein L4/L1 family 16 203 3.0E-60 T 19-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 AMF_RS08470 59a73c5144f22f2dd8428d895ce702bc 208 SUPERFAMILY SSF52166 1 205 4.58E-68 T 19-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 AMF_RS08470 59a73c5144f22f2dd8428d895ce702bc 208 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 30.434 T 19-04-2016 IPR013005 50S ribosomal protein uL4 AMF_RS08470 59a73c5144f22f2dd8428d895ce702bc 208 Gene3D G3DSA:3.40.1370.10 57 205 7.5E-49 T 19-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 AMF_RS06600 1c028cbfb4a216fefd0a90e54faa0076 430 PANTHER PTHR23508:SF1 14 414 3.5E-48 T 19-04-2016 AMF_RS06600 1c028cbfb4a216fefd0a90e54faa0076 430 PANTHER PTHR23508 14 414 3.5E-48 T 19-04-2016 AMF_RS06600 1c028cbfb4a216fefd0a90e54faa0076 430 Pfam PF00083 Sugar (and other) transporter 15 227 1.3E-17 T 19-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMF_RS06600 1c028cbfb4a216fefd0a90e54faa0076 430 Gene3D G3DSA:1.20.1250.20 14 220 1.6E-12 T 19-04-2016 AMF_RS06600 1c028cbfb4a216fefd0a90e54faa0076 430 SUPERFAMILY SSF103473 14 413 7.06E-37 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMF_RS05545 2188742a2f30c30441645388269bd188 183 Pfam PF01765 Ribosome recycling factor 22 182 1.2E-46 T 19-04-2016 IPR023584 Ribosome recycling factor domain AMF_RS05545 2188742a2f30c30441645388269bd188 183 PANTHER PTHR20982 9 183 3.4E-58 T 19-04-2016 IPR002661 Ribosome recycling factor GO:0006412 AMF_RS05545 2188742a2f30c30441645388269bd188 183 Gene3D G3DSA:1.10.132.20 65 182 3.0E-34 T 19-04-2016 IPR023584 Ribosome recycling factor domain AMF_RS05545 2188742a2f30c30441645388269bd188 183 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 182 3.9E-51 T 19-04-2016 IPR002661 Ribosome recycling factor GO:0006412 AMF_RS05545 2188742a2f30c30441645388269bd188 183 SUPERFAMILY SSF55194 1 182 1.44E-56 T 19-04-2016 IPR023584 Ribosome recycling factor domain AMF_RS09940 885781c6ccc02d781021a57bd1a9223c 332 Gene3D G3DSA:3.30.450.90 11 108 5.6E-29 T 19-04-2016 AMF_RS09940 885781c6ccc02d781021a57bd1a9223c 332 SUPERFAMILY SSF52540 10 311 1.23E-46 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09940 885781c6ccc02d781021a57bd1a9223c 332 PANTHER PTHR30258:SF12 12 126 4.0E-64 T 19-04-2016 AMF_RS09940 885781c6ccc02d781021a57bd1a9223c 332 PANTHER PTHR30258:SF12 149 322 4.0E-64 T 19-04-2016 AMF_RS09940 885781c6ccc02d781021a57bd1a9223c 332 PANTHER PTHR30258 12 126 4.0E-64 T 19-04-2016 AMF_RS09940 885781c6ccc02d781021a57bd1a9223c 332 PANTHER PTHR30258 149 322 4.0E-64 T 19-04-2016 AMF_RS09940 885781c6ccc02d781021a57bd1a9223c 332 Gene3D G3DSA:3.40.50.300 147 322 8.9E-48 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09940 885781c6ccc02d781021a57bd1a9223c 332 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 19 324 3.8E-131 T 19-04-2016 IPR014155 Type IV secretion system protein VirB11 GO:0005737|GO:0006810|GO:0009405 AMF_RS09940 885781c6ccc02d781021a57bd1a9223c 332 Pfam PF00437 Type II/IV secretion system protein 13 312 1.6E-89 T 19-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AMF_RS09655 1eb8374f6418a71bcd883e4cfa5ea6cb 279 SMART SM00986 112 264 9.4E-37 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMF_RS09655 1eb8374f6418a71bcd883e4cfa5ea6cb 279 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 99 269 8.9E-63 T 19-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain AMF_RS09655 1eb8374f6418a71bcd883e4cfa5ea6cb 279 SMART SM00987 112 264 9.4E-37 T 19-04-2016 AMF_RS09655 1eb8374f6418a71bcd883e4cfa5ea6cb 279 Pfam PF03167 Uracil DNA glycosylase superfamily 113 264 3.2E-39 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMF_RS09655 1eb8374f6418a71bcd883e4cfa5ea6cb 279 PANTHER PTHR33693:SF1 80 278 4.0E-71 T 19-04-2016 AMF_RS09655 1eb8374f6418a71bcd883e4cfa5ea6cb 279 SUPERFAMILY SSF52141 82 271 1.44E-59 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMF_RS09655 1eb8374f6418a71bcd883e4cfa5ea6cb 279 PANTHER PTHR33693 80 278 4.0E-71 T 19-04-2016 AMF_RS09655 1eb8374f6418a71bcd883e4cfa5ea6cb 279 Gene3D G3DSA:3.40.470.10 87 272 8.8E-62 T 19-04-2016 IPR005122 Uracil-DNA glycosylase-like AMF_RS06680 1d53ee7716453abb819119dd637256a6 290 Pfam PF13177 DNA polymerase III, delta subunit 23 145 4.8E-21 T 19-04-2016 AMF_RS06680 1d53ee7716453abb819119dd637256a6 290 SUPERFAMILY SSF52540 16 162 1.01E-30 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06680 1d53ee7716453abb819119dd637256a6 290 PANTHER PTHR11669:SF8 1 178 9.8E-29 T 19-04-2016 AMF_RS06680 1d53ee7716453abb819119dd637256a6 290 PANTHER PTHR11669 1 178 9.8E-29 T 19-04-2016 AMF_RS06680 1d53ee7716453abb819119dd637256a6 290 Gene3D G3DSA:3.40.50.300 12 142 2.4E-28 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07750 0c54536012039c90d848f34021397d51 237 Pfam PF03741 Integral membrane protein TerC family 13 199 6.8E-38 T 19-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 AMF_RS07750 0c54536012039c90d848f34021397d51 237 PANTHER PTHR30060:SF1 6 221 1.3E-40 T 19-04-2016 AMF_RS07750 0c54536012039c90d848f34021397d51 237 PANTHER PTHR30060 6 221 1.3E-40 T 19-04-2016 AMF_RS09800 2a6d47a801a39455437f74a90aa7b0ad 102 Gene3D G3DSA:3.30.1310.10 9 98 3.1E-13 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMF_RS09800 2a6d47a801a39455437f74a90aa7b0ad 102 Pfam PF02575 YbaB/EbfC DNA-binding family 13 98 1.5E-13 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMF_RS09800 2a6d47a801a39455437f74a90aa7b0ad 102 SUPERFAMILY SSF82607 6 99 1.57E-15 T 19-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMF_RS05315 88da6e98b6ed5f1b79e7c2b4a51dd795 59 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 2 55 25.72 T 19-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 AMF_RS05315 88da6e98b6ed5f1b79e7c2b4a51dd795 59 Gene3D G3DSA:2.20.25.10 9 55 3.9E-22 T 19-04-2016 AMF_RS05315 88da6e98b6ed5f1b79e7c2b4a51dd795 59 SUPERFAMILY SSF158997 2 56 7.19E-19 T 19-04-2016 AMF_RS05315 88da6e98b6ed5f1b79e7c2b4a51dd795 59 Pfam PF03966 Trm112p-like protein 3 42 2.4E-7 T 19-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 AMF_RS05315 88da6e98b6ed5f1b79e7c2b4a51dd795 59 PANTHER PTHR33505 2 57 3.8E-22 T 19-04-2016 AMF_RS08815 b7118e2587fd4d443ac4cadeb10984d1 247 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 18 33 - T 19-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 AMF_RS08815 b7118e2587fd4d443ac4cadeb10984d1 247 Pfam PF01209 ubiE/COQ5 methyltransferase family 6 230 6.0E-74 T 19-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 AMF_RS08815 b7118e2587fd4d443ac4cadeb10984d1 247 Gene3D G3DSA:3.40.50.150 7 232 2.7E-51 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS08815 b7118e2587fd4d443ac4cadeb10984d1 247 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 7 230 1.3E-78 T 19-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 AMF_RS08815 b7118e2587fd4d443ac4cadeb10984d1 247 PANTHER PTHR10108 6 234 1.9E-98 T 19-04-2016 AMF_RS08815 b7118e2587fd4d443ac4cadeb10984d1 247 SUPERFAMILY SSF53335 7 233 8.9E-42 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS08815 b7118e2587fd4d443ac4cadeb10984d1 247 PANTHER PTHR10108:SF24 6 234 1.9E-98 T 19-04-2016 AMF_RS08815 b7118e2587fd4d443ac4cadeb10984d1 247 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 5 230 35.14 T 19-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 AMF_RS05425 d59e8f8124a5275f41d04e5d213b4c3c 372 SUPERFAMILY SSF52518 49 372 9.7E-105 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS05425 d59e8f8124a5275f41d04e5d213b4c3c 372 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 58 372 4.6E-147 T 19-04-2016 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AMF_RS05425 d59e8f8124a5275f41d04e5d213b4c3c 372 PANTHER PTHR11516:SF40 55 371 3.6E-169 T 19-04-2016 AMF_RS05425 d59e8f8124a5275f41d04e5d213b4c3c 372 Pfam PF00676 Dehydrogenase E1 component 66 362 5.0E-103 T 19-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 AMF_RS05425 d59e8f8124a5275f41d04e5d213b4c3c 372 PANTHER PTHR11516 55 371 3.6E-169 T 19-04-2016 AMF_RS05425 d59e8f8124a5275f41d04e5d213b4c3c 372 Gene3D G3DSA:3.40.50.970 48 372 1.4E-132 T 19-04-2016 IPR029061 Thiamin diphosphate-binding fold AMF_RS07445 87cff9848b5e5834c23aaf0a05fe3160 104 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 95 6.4E-15 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMF_RS07445 87cff9848b5e5834c23aaf0a05fe3160 104 Gene3D G3DSA:3.30.160.100 1 98 1.9E-16 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMF_RS07445 87cff9848b5e5834c23aaf0a05fe3160 104 SUPERFAMILY SSF69754 1 102 1.24E-19 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMF_RS07445 87cff9848b5e5834c23aaf0a05fe3160 104 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 101 2.0E-11 T 19-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AMF_RS06330 75e543b3bc66675ea636afcaf69bc487 90 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 46 83 3.0E-14 T 19-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 AMF_RS06330 75e543b3bc66675ea636afcaf69bc487 90 Gene3D G3DSA:1.10.1200.10 9 87 6.1E-23 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMF_RS06330 75e543b3bc66675ea636afcaf69bc487 90 Pfam PF00550 Phosphopantetheine attachment site 19 83 2.5E-10 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMF_RS06330 75e543b3bc66675ea636afcaf69bc487 90 SUPERFAMILY SSF47336 9 85 7.85E-15 T 19-04-2016 IPR009081 Phosphopantetheine binding ACP domain AMF_RS06330 75e543b3bc66675ea636afcaf69bc487 90 ProSitePatterns PS00012 Phosphopantetheine attachment site. 42 57 - T 19-04-2016 IPR006162 Phosphopantetheine attachment site AMF_RS06330 75e543b3bc66675ea636afcaf69bc487 90 PANTHER PTHR20863 8 83 1.4E-13 T 19-04-2016 AMF_RS06330 75e543b3bc66675ea636afcaf69bc487 90 Hamap MF_01217 Acyl carrier protein [acpP]. 10 87 14.671 T 19-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 AMF_RS09935 2c8789c06f0889776701d5cd6cd44fd2 806 SUPERFAMILY SSF52540 117 556 9.96E-51 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09935 2c8789c06f0889776701d5cd6cd44fd2 806 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 124 568 4.0E-150 T 19-04-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 AMF_RS09935 2c8789c06f0889776701d5cd6cd44fd2 806 Gene3D G3DSA:3.40.50.300 117 225 2.0E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09935 2c8789c06f0889776701d5cd6cd44fd2 806 Gene3D G3DSA:3.40.50.300 355 556 2.0E-54 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09935 2c8789c06f0889776701d5cd6cd44fd2 806 PANTHER PTHR37937:SF1 24 574 6.3E-62 T 19-04-2016 AMF_RS09935 2c8789c06f0889776701d5cd6cd44fd2 806 PANTHER PTHR37937 24 574 6.3E-62 T 19-04-2016 AMF_RS06140 9c727a8ed7e35e0e0cf9e308ad214c50 109 SUPERFAMILY SSF81343 3 102 5.89E-18 T 19-04-2016 AMF_RS06140 9c727a8ed7e35e0e0cf9e308ad214c50 109 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 4 102 6.1E-17 T 19-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 AMF_RS06140 9c727a8ed7e35e0e0cf9e308ad214c50 109 Gene3D G3DSA:1.20.1300.10 5 102 1.7E-16 T 19-04-2016 AMF_RS06140 9c727a8ed7e35e0e0cf9e308ad214c50 109 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 93 5.3E-9 T 19-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 AMF_RS08915 3bffda29f8123ebee45a7f6a34eeb03c 408 Gene3D G3DSA:1.20.1600.10 23 404 2.3E-40 T 19-04-2016 AMF_RS08915 3bffda29f8123ebee45a7f6a34eeb03c 408 Pfam PF02321 Outer membrane efflux protein 25 196 1.8E-20 T 19-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AMF_RS08915 3bffda29f8123ebee45a7f6a34eeb03c 408 Pfam PF02321 Outer membrane efflux protein 222 403 3.8E-19 T 19-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AMF_RS08915 3bffda29f8123ebee45a7f6a34eeb03c 408 PANTHER PTHR30026:SF3 1 408 1.1E-40 T 19-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 AMF_RS08915 3bffda29f8123ebee45a7f6a34eeb03c 408 SUPERFAMILY SSF56954 2 405 6.15E-58 T 19-04-2016 AMF_RS08915 3bffda29f8123ebee45a7f6a34eeb03c 408 PANTHER PTHR30026 1 408 1.1E-40 T 19-04-2016 AMF_RS08405 714f79e97438e9bca4071071808e6424 132 Pfam PF00410 Ribosomal protein S8 5 132 2.3E-42 T 19-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 AMF_RS08405 714f79e97438e9bca4071071808e6424 132 PANTHER PTHR11758:SF4 2 132 2.2E-39 T 19-04-2016 AMF_RS08405 714f79e97438e9bca4071071808e6424 132 Gene3D G3DSA:3.30.1490.10 76 132 8.3E-24 T 19-04-2016 AMF_RS08405 714f79e97438e9bca4071071808e6424 132 SUPERFAMILY SSF56047 3 132 4.19E-41 T 19-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 AMF_RS08405 714f79e97438e9bca4071071808e6424 132 Gene3D G3DSA:3.30.1370.30 3 70 2.1E-19 T 19-04-2016 AMF_RS08405 714f79e97438e9bca4071071808e6424 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 19-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 AMF_RS08405 714f79e97438e9bca4071071808e6424 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 29.338 T 19-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 AMF_RS08405 714f79e97438e9bca4071071808e6424 132 PANTHER PTHR11758 2 132 2.2E-39 T 19-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 AMF_RS07190 aec23ab42652c2fc7d995cada953a75a 118 Pfam PF13489 Methyltransferase domain 2 77 2.4E-7 T 19-04-2016 AMF_RS07190 aec23ab42652c2fc7d995cada953a75a 118 PANTHER PTHR10108:SF902 1 113 8.6E-30 T 19-04-2016 AMF_RS07190 aec23ab42652c2fc7d995cada953a75a 118 SUPERFAMILY SSF53335 2 92 9.02E-15 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS07190 aec23ab42652c2fc7d995cada953a75a 118 PANTHER PTHR10108 1 113 8.6E-30 T 19-04-2016 AMF_RS07190 aec23ab42652c2fc7d995cada953a75a 118 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 1 107 7.2E-38 T 19-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 AMF_RS07190 aec23ab42652c2fc7d995cada953a75a 118 Gene3D G3DSA:3.40.50.150 1 98 1.1E-16 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS09515 ff34933ee1f3d94a0912fa812a00e802 402 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 240 249 - T 19-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AMF_RS09515 ff34933ee1f3d94a0912fa812a00e802 402 PANTHER PTHR13693:SF57 1 400 1.2E-198 T 19-04-2016 AMF_RS09515 ff34933ee1f3d94a0912fa812a00e802 402 Gene3D G3DSA:3.90.1150.10 277 387 1.0E-24 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS09515 ff34933ee1f3d94a0912fa812a00e802 402 PANTHER PTHR13693 1 400 1.2E-198 T 19-04-2016 AMF_RS09515 ff34933ee1f3d94a0912fa812a00e802 402 Pfam PF00155 Aminotransferase class I and II 46 384 3.4E-62 T 19-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMF_RS09515 ff34933ee1f3d94a0912fa812a00e802 402 Gene3D G3DSA:3.40.640.10 73 276 1.1E-79 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMF_RS09515 ff34933ee1f3d94a0912fa812a00e802 402 SUPERFAMILY SSF53383 2 393 1.04E-102 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMF_RS09515 ff34933ee1f3d94a0912fa812a00e802 402 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 2 396 1.9E-175 T 19-04-2016 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: REACT_9431|UniPathway: UPA00251 AMF_RS09825 5b6c1e073dcb82fad5a461eae0808d23 383 Pfam PF01098 Cell cycle protein 35 372 1.5E-64 T 19-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 AMF_RS09825 5b6c1e073dcb82fad5a461eae0808d23 383 PANTHER PTHR30474 8 380 7.8E-85 T 19-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 23 394 44.826 T 19-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 120 154 - T 19-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 PANTHER PTHR11014 17 397 4.6E-60 T 19-04-2016 AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 Pfam PF07687 Peptidase dimerisation domain 195 301 3.1E-17 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 27 392 1.1E-113 T 19-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 SUPERFAMILY SSF53187 312 392 1.44E-56 T 19-04-2016 AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 SUPERFAMILY SSF53187 14 198 1.44E-56 T 19-04-2016 AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 Gene3D G3DSA:3.40.630.10 336 393 2.8E-64 T 19-04-2016 AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 Gene3D G3DSA:3.40.630.10 21 207 2.8E-64 T 19-04-2016 AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 Gene3D G3DSA:3.30.70.360 208 305 5.6E-25 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 SUPERFAMILY SSF55031 199 305 3.89E-22 T 19-04-2016 IPR011650 Peptidase M20, dimerisation domain AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 Pfam PF01546 Peptidase family M20/M25/M40 87 390 1.5E-35 T 19-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AMF_RS10075 f7102abf4452e54f0717615a5073eded 400 PANTHER PTHR11014:SF106 17 397 4.6E-60 T 19-04-2016 AMF_RS05965 4017e68cf665c9102bb2697d13f5adc8 484 Gene3D G3DSA:3.60.21.10 106 387 1.1E-14 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMF_RS05965 4017e68cf665c9102bb2697d13f5adc8 484 SUPERFAMILY SSF56300 106 381 9.84E-22 T 19-04-2016 IPR029052 Metallo-dependent phosphatase-like AMF_RS05965 4017e68cf665c9102bb2697d13f5adc8 484 Pfam PF00149 Calcineurin-like phosphoesterase 106 334 1.3E-13 T 19-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 AMF_RS10005 dc01a8013a6695ea8c3082d567cf3895 222 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 13 47 2.0E-14 T 19-04-2016 IPR011723 Zinc finger/thioredoxin putative AMF_RS10005 dc01a8013a6695ea8c3082d567cf3895 222 Pfam PF13717 zinc-ribbon domain 13 48 1.1E-15 T 19-04-2016 AMF_RS09920 462f570d1c58162cff2d52a885621cd6 123 Gene3D G3DSA:3.30.70.20 4 88 1.7E-20 T 19-04-2016 AMF_RS09920 462f570d1c58162cff2d52a885621cd6 123 PANTHER PTHR11938 1 96 3.3E-30 T 19-04-2016 AMF_RS09920 462f570d1c58162cff2d52a885621cd6 123 Pfam PF00037 4Fe-4S binding domain 34 55 1.8E-8 T 19-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMF_RS09920 462f570d1c58162cff2d52a885621cd6 123 Pfam PF11953 Domain of unknown function (DUF3470) 81 120 7.7E-13 T 19-04-2016 IPR022569 Ferredoxin, C-terminal AMF_RS09920 462f570d1c58162cff2d52a885621cd6 123 SUPERFAMILY SSF54862 3 69 5.12E-23 T 19-04-2016 AMF_RS09920 462f570d1c58162cff2d52a885621cd6 123 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 19-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMF_RS09920 462f570d1c58162cff2d52a885621cd6 123 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.4E-17 T 19-04-2016 IPR000813 7Fe ferredoxin GO:0009055 AMF_RS09920 462f570d1c58162cff2d52a885621cd6 123 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.4E-17 T 19-04-2016 IPR000813 7Fe ferredoxin GO:0009055 AMF_RS09920 462f570d1c58162cff2d52a885621cd6 123 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.4E-17 T 19-04-2016 IPR000813 7Fe ferredoxin GO:0009055 AMF_RS09920 462f570d1c58162cff2d52a885621cd6 123 PANTHER PTHR11938:SF101 1 96 3.3E-30 T 19-04-2016 AMF_RS08040 80c97330a759ca95304c885dc6d83b9f 1376 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 674 868 2.2E-17 T 19-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 195 325 7.3E-45 T 19-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 Gene3D G3DSA:3.40.50.300 404 440 9.7E-4 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 SMART SM00382 190 329 4.0E-22 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 Pfam PF01434 Peptidase family M41 387 586 4.1E-72 T 19-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 Gene3D G3DSA:1.10.8.60 337 402 2.0E-27 T 19-04-2016 AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 ProSitePatterns PS00674 AAA-protein family signature. 297 315 - T 19-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 SUPERFAMILY SSF52540 152 397 4.17E-72 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 Gene3D G3DSA:3.40.50.300 154 336 2.2E-64 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 109 588 1.4E-223 T 19-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 601 36.222 T 19-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 PANTHER PTHR23076 1 597 0.0 T 19-04-2016 AMF_RS09235 e080e2fa5d56373713f8162706b7a7dc 610 SUPERFAMILY SSF140990 408 595 8.37E-69 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 PIRSF PIRSF003101 5 408 1.4E-97 T 19-04-2016 IPR020823 Cell division protein FtsA GO:0007049 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 Pfam PF14450 Cell division protein FtsA 211 374 6.1E-19 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 PANTHER PTHR32432 2 375 2.5E-81 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 14 375 4.2E-83 T 19-04-2016 IPR020823 Cell division protein FtsA GO:0007049 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 PANTHER PTHR32432:SF4 2 375 2.5E-81 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 Hamap MF_02033 Cell division protein FtsA [ftsA]. 10 409 21.981 T 19-04-2016 IPR020823 Cell division protein FtsA GO:0007049 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 Gene3D G3DSA:3.30.420.40 7 94 4.3E-7 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 Gene3D G3DSA:3.30.420.40 171 212 4.3E-7 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 SMART SM00842 14 199 1.3E-57 T 19-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 SUPERFAMILY SSF53067 201 377 6.79E-37 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 Pfam PF02491 SHS2 domain inserted in FTSA 91 165 3.5E-10 T 19-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 SUPERFAMILY SSF53067 13 200 9.85E-36 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 Gene3D G3DSA:3.90.640.10 238 299 2.6E-17 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 Gene3D G3DSA:3.30.420.40 300 351 3.3E-22 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 Gene3D G3DSA:3.30.420.40 213 237 3.3E-22 T 19-04-2016 AMF_RS09215 3ab629c9abf0a6719b0d5babfe157753 411 Gene3D G3DSA:3.30.1490.110 95 167 1.4E-9 T 19-04-2016 AMF_RS07955 84fe12ebdfef11745dea30fbdcab80ff 267 PANTHER PTHR30477 1 263 5.4E-38 T 19-04-2016 AMF_RS07955 84fe12ebdfef11745dea30fbdcab80ff 267 PANTHER PTHR30477:SF0 1 263 5.4E-38 T 19-04-2016 AMF_RS07955 84fe12ebdfef11745dea30fbdcab80ff 267 SUPERFAMILY SSF81345 4 258 2.35E-23 T 19-04-2016 IPR029022 ABC transporter, BtuC-like AMF_RS07955 84fe12ebdfef11745dea30fbdcab80ff 267 Pfam PF00950 ABC 3 transport family 8 260 8.3E-50 T 19-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 AMF_RS06250 2a69aaf6c2b464d9a8f6291ba801c5e4 340 PANTHER PTHR20857:SF15 136 339 1.2E-55 T 19-04-2016 AMF_RS06250 2a69aaf6c2b464d9a8f6291ba801c5e4 340 Gene3D G3DSA:3.20.20.70 142 339 1.7E-63 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS06250 2a69aaf6c2b464d9a8f6291ba801c5e4 340 Pfam PF02581 Thiamine monophosphate synthase/TENI 156 321 4.6E-54 T 19-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 AMF_RS06250 2a69aaf6c2b464d9a8f6291ba801c5e4 340 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 157 331 3.2E-51 T 19-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 AMF_RS06250 2a69aaf6c2b464d9a8f6291ba801c5e4 340 SUPERFAMILY SSF51391 145 337 4.45E-64 T 19-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 AMF_RS06250 2a69aaf6c2b464d9a8f6291ba801c5e4 340 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 146 339 21.065 T 19-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 AMF_RS06250 2a69aaf6c2b464d9a8f6291ba801c5e4 340 PANTHER PTHR20857 136 339 1.2E-55 T 19-04-2016 AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 PANTHER PTHR24423 199 444 9.3E-83 T 19-04-2016 AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 Gene3D G3DSA:3.30.565.10 275 448 1.8E-44 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 SMART SM00388 220 289 1.9E-23 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 SUPERFAMILY SSF55874 278 445 1.17E-44 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 444 4.7E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 386 4.7E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 4.7E-12 T 19-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 Gene3D G3DSA:1.10.287.130 214 274 1.7E-20 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 Pfam PF00512 His Kinase A (phospho-acceptor) domain 220 288 1.5E-21 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 SUPERFAMILY SSF47384 206 290 9.02E-22 T 19-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 SMART SM00387 335 447 3.9E-33 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS06280 db3378e9e38e6e23e2abf4902120a819 456 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 336 446 1.5E-23 T 19-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain AMF_RS10020 2897ce1c21016e8ec65a3a670082bf44 185 SUPERFAMILY SSF52507 1 175 1.7E-54 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMF_RS10020 2897ce1c21016e8ec65a3a670082bf44 185 Pfam PF02441 Flavoprotein 1 129 2.7E-33 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMF_RS10020 2897ce1c21016e8ec65a3a670082bf44 185 PANTHER PTHR14359:SF20 2 174 9.4E-60 T 19-04-2016 AMF_RS10020 2897ce1c21016e8ec65a3a670082bf44 185 PANTHER PTHR14359 2 174 9.4E-60 T 19-04-2016 AMF_RS10020 2897ce1c21016e8ec65a3a670082bf44 185 Gene3D G3DSA:3.40.50.1950 1 175 1.2E-57 T 19-04-2016 IPR003382 Flavoprotein GO:0003824 AMF_RS07160 cebba9529c7e457d31b2ca658c546580 339 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 12 336 5.6E-78 T 19-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family AMF_RS07160 cebba9529c7e457d31b2ca658c546580 339 Gene3D G3DSA:3.40.190.10 135 267 3.0E-38 T 19-04-2016 AMF_RS07160 cebba9529c7e457d31b2ca658c546580 339 PANTHER PTHR30024:SF13 32 339 1.2E-50 T 19-04-2016 AMF_RS07160 cebba9529c7e457d31b2ca658c546580 339 Pfam PF16868 NMT1-like family 43 336 3.8E-83 T 19-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family AMF_RS07160 cebba9529c7e457d31b2ca658c546580 339 Gene3D G3DSA:3.40.190.10 38 125 1.2E-46 T 19-04-2016 AMF_RS07160 cebba9529c7e457d31b2ca658c546580 339 Gene3D G3DSA:3.40.190.10 268 337 1.2E-46 T 19-04-2016 AMF_RS07160 cebba9529c7e457d31b2ca658c546580 339 SUPERFAMILY SSF53850 39 338 1.52E-69 T 19-04-2016 AMF_RS07160 cebba9529c7e457d31b2ca658c546580 339 PANTHER PTHR30024 32 339 1.2E-50 T 19-04-2016 AMF_RS06065 5e0e0148d37617cf21f2ba979b9a1efd 257 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 250 3.6E-48 T 19-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMF_RS06065 5e0e0148d37617cf21f2ba979b9a1efd 257 PANTHER PTHR34265 1 253 6.0E-35 T 19-04-2016 AMF_RS06065 5e0e0148d37617cf21f2ba979b9a1efd 257 Pfam PF03309 Type III pantothenate kinase 3 208 1.1E-50 T 19-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMF_RS06065 5e0e0148d37617cf21f2ba979b9a1efd 257 SUPERFAMILY SSF53067 127 253 6.04E-26 T 19-04-2016 AMF_RS06065 5e0e0148d37617cf21f2ba979b9a1efd 257 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 256 27.423 T 19-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 AMF_RS06065 5e0e0148d37617cf21f2ba979b9a1efd 257 Gene3D G3DSA:3.30.420.40 1 65 4.6E-5 T 19-04-2016 AMF_RS06065 5e0e0148d37617cf21f2ba979b9a1efd 257 SUPERFAMILY SSF53067 1 123 4.77E-23 T 19-04-2016 AMF_RS06065 5e0e0148d37617cf21f2ba979b9a1efd 257 Gene3D G3DSA:3.30.420.40 106 255 2.1E-29 T 19-04-2016 AMF_RS08290 a853e9587edc28c336182048c38ec240 252 SMART SM00382 30 225 1.3E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS08290 a853e9587edc28c336182048c38ec240 252 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_RS08290 a853e9587edc28c336182048c38ec240 252 SUPERFAMILY SSF52540 8 240 1.3E-59 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08290 a853e9587edc28c336182048c38ec240 252 Gene3D G3DSA:3.40.50.300 8 247 7.7E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08290 a853e9587edc28c336182048c38ec240 252 Pfam PF00005 ABC transporter 23 177 4.1E-31 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_RS08290 a853e9587edc28c336182048c38ec240 252 PANTHER PTHR24220:SF585 7 248 2.7E-123 T 19-04-2016 AMF_RS08290 a853e9587edc28c336182048c38ec240 252 PANTHER PTHR24220 7 248 2.7E-123 T 19-04-2016 AMF_RS08290 a853e9587edc28c336182048c38ec240 252 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 7 251 1.2E-108 T 19-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AMF_RS06760 b35bc2a744dd0c3b141a6e393fba1dba 173 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 17 148 5.1E-30 T 19-04-2016 IPR011605 NusB antitermination factor GO:0006353 AMF_RS06760 b35bc2a744dd0c3b141a6e393fba1dba 173 SUPERFAMILY SSF48013 14 147 7.33E-27 T 19-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMF_RS06760 b35bc2a744dd0c3b141a6e393fba1dba 173 Gene3D G3DSA:1.10.940.10 15 147 2.0E-29 T 19-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMF_RS06760 b35bc2a744dd0c3b141a6e393fba1dba 173 Pfam PF01029 NusB family 18 147 2.3E-24 T 19-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMF_RS06760 b35bc2a744dd0c3b141a6e393fba1dba 173 PANTHER PTHR11078 35 165 4.6E-14 T 19-04-2016 IPR011605 NusB antitermination factor GO:0006353 AMF_RS08180 0b13ff647de5a3616972bbd25b9619ba 152 PANTHER PTHR33932 17 151 1.1E-27 T 19-04-2016 AMF_RS08180 0b13ff647de5a3616972bbd25b9619ba 152 PANTHER PTHR33932:SF4 17 151 1.1E-27 T 19-04-2016 AMF_RS08180 0b13ff647de5a3616972bbd25b9619ba 152 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 21 141 1.9E-27 T 19-04-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein AMF_RS07125 ff97651c800199f67db0f48a6f98efef 274 PANTHER PTHR30213:SF1 15 266 4.5E-30 T 19-04-2016 AMF_RS07125 ff97651c800199f67db0f48a6f98efef 274 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 18 271 1.4E-28 T 19-04-2016 IPR017039 Virulence factor BrkB AMF_RS07125 ff97651c800199f67db0f48a6f98efef 274 PIRSF PIRSF035875 5 274 2.1E-51 T 19-04-2016 IPR017039 Virulence factor BrkB AMF_RS07125 ff97651c800199f67db0f48a6f98efef 274 Pfam PF03631 Virulence factor BrkB 21 273 2.1E-51 T 19-04-2016 IPR017039 Virulence factor BrkB AMF_RS07125 ff97651c800199f67db0f48a6f98efef 274 PANTHER PTHR30213 15 266 4.5E-30 T 19-04-2016 AMF_RS05655 3121b2b3235fc7c67acdba2fc9e8bb25 880 Pfam PF11874 Domain of unknown function (DUF3394) 694 875 6.6E-34 T 19-04-2016 IPR021814 Protein of unknown function DUF3394 AMF_RS05655 3121b2b3235fc7c67acdba2fc9e8bb25 880 PANTHER PTHR33362 443 737 3.9E-182 T 19-04-2016 AMF_RS05655 3121b2b3235fc7c67acdba2fc9e8bb25 880 PANTHER PTHR33362 22 347 3.9E-182 T 19-04-2016 AMF_RS05655 3121b2b3235fc7c67acdba2fc9e8bb25 880 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 22 739 1.3E-179 T 19-04-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein AMF_RS05655 3121b2b3235fc7c67acdba2fc9e8bb25 880 PANTHER PTHR33362:SF1 443 737 3.9E-182 T 19-04-2016 AMF_RS05655 3121b2b3235fc7c67acdba2fc9e8bb25 880 PANTHER PTHR33362:SF1 22 347 3.9E-182 T 19-04-2016 AMF_RS05655 3121b2b3235fc7c67acdba2fc9e8bb25 880 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 130 682 6.0E-64 T 19-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMF_RS07215 8c82d033c9f709b517f84892793c36d5 166 Pfam PF00814 Glycoprotease family 27 166 4.6E-48 T 19-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07215 8c82d033c9f709b517f84892793c36d5 166 PANTHER PTHR11735 6 166 2.8E-63 T 19-04-2016 AMF_RS07215 8c82d033c9f709b517f84892793c36d5 166 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 8 21 9.9E-35 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07215 8c82d033c9f709b517f84892793c36d5 166 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 99 118 9.9E-35 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07215 8c82d033c9f709b517f84892793c36d5 166 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 133 145 9.9E-35 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07215 8c82d033c9f709b517f84892793c36d5 166 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 156 166 9.9E-35 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07215 8c82d033c9f709b517f84892793c36d5 166 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 78 98 9.9E-35 T 19-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AMF_RS07215 8c82d033c9f709b517f84892793c36d5 166 PANTHER PTHR11735:SF12 6 166 2.8E-63 T 19-04-2016 AMF_RS07215 8c82d033c9f709b517f84892793c36d5 166 SUPERFAMILY SSF53067 7 123 1.14E-29 T 19-04-2016 AMF_RS07215 8c82d033c9f709b517f84892793c36d5 166 Gene3D G3DSA:3.30.420.40 7 161 1.7E-42 T 19-04-2016 AMF_RS09175 26dfad1860fa49b7ea66e45afcc9bd8c 228 Pfam PF02104 SURF1 family 24 211 1.0E-27 T 19-04-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 AMF_RS09175 26dfad1860fa49b7ea66e45afcc9bd8c 228 PANTHER PTHR23427:SF2 23 214 5.2E-22 T 19-04-2016 AMF_RS09175 26dfad1860fa49b7ea66e45afcc9bd8c 228 PANTHER PTHR23427 23 214 5.2E-22 T 19-04-2016 AMF_RS06810 ee27135ea2aacbd239ea00a859f03ee3 296 SUPERFAMILY SSF55120 89 294 1.06E-52 T 19-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS06810 ee27135ea2aacbd239ea00a859f03ee3 296 PANTHER PTHR11079:SF74 14 294 3.5E-58 T 19-04-2016 AMF_RS06810 ee27135ea2aacbd239ea00a859f03ee3 296 Pfam PF00849 RNA pseudouridylate synthase 97 241 2.2E-33 T 19-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS06810 ee27135ea2aacbd239ea00a859f03ee3 296 SUPERFAMILY SSF55174 12 111 6.28E-8 T 19-04-2016 AMF_RS06810 ee27135ea2aacbd239ea00a859f03ee3 296 SMART SM00363 14 74 3.3E-5 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMF_RS06810 ee27135ea2aacbd239ea00a859f03ee3 296 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 19-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS06810 ee27135ea2aacbd239ea00a859f03ee3 296 Pfam PF01479 S4 domain 14 60 3.4E-5 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMF_RS06810 ee27135ea2aacbd239ea00a859f03ee3 296 PANTHER PTHR11079 14 294 3.5E-58 T 19-04-2016 AMF_RS06810 ee27135ea2aacbd239ea00a859f03ee3 296 Gene3D G3DSA:3.10.290.10 12 78 2.2E-6 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 SUPERFAMILY SSF55979 138 258 2.07E-23 T 19-04-2016 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 Pfam PF02767 DNA polymerase III beta subunit, central domain 141 257 9.2E-28 T 19-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 Gene3D G3DSA:3.10.150.10 262 379 5.2E-29 T 19-04-2016 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 SUPERFAMILY SSF55979 14 130 1.28E-20 T 19-04-2016 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 PANTHER PTHR30478 13 379 2.0E-102 T 19-04-2016 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 14 378 5.0E-83 T 19-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 SUPERFAMILY SSF55979 261 379 4.26E-28 T 19-04-2016 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 PIRSF PIRSF000804 12 379 2.3E-95 T 19-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 14 129 2.9E-25 T 19-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 260 378 2.8E-26 T 19-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 SMART SM00480 28 375 1.6E-87 T 19-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 Gene3D G3DSA:3.10.150.10 138 261 2.3E-25 T 19-04-2016 AMF_RS08870 656e36c2b8c554e157cc85bc315d2885 379 Gene3D G3DSA:3.10.150.10 13 130 2.6E-21 T 19-04-2016 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 4 237 1.6E-63 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 SUPERFAMILY SSF81336 79 235 1.29E-43 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 PRINTS PR00123 ATP synthase A subunit signature 221 236 4.6E-29 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 PRINTS PR00123 ATP synthase A subunit signature 147 162 4.6E-29 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 PRINTS PR00123 ATP synthase A subunit signature 86 102 4.6E-29 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 PRINTS PR00123 ATP synthase A subunit signature 167 189 4.6E-29 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 PANTHER PTHR11410 1 241 4.5E-74 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 ProSitePatterns PS00449 ATP synthase a subunit signature. 170 179 - T 19-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 Hamap MF_01393 ATP synthase subunit a [atpB]. 5 241 14.958 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 Pfam PF00119 ATP synthase A chain 31 235 2.9E-50 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 PANTHER PTHR11410:SF0 1 241 4.5E-74 T 19-04-2016 AMF_RS09190 6475664b674763d8f8f822f60aae1900 241 Gene3D G3DSA:1.20.120.220 80 241 1.3E-47 T 19-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 AMF_RS09025 2d50e4eb9f81bb9d18c7580884e2af3f 290 PRINTS PR00721 Stomatin signature 79 100 2.6E-8 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMF_RS09025 2d50e4eb9f81bb9d18c7580884e2af3f 290 PRINTS PR00721 Stomatin signature 181 202 2.6E-8 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMF_RS09025 2d50e4eb9f81bb9d18c7580884e2af3f 290 PRINTS PR00721 Stomatin signature 31 53 2.6E-8 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMF_RS09025 2d50e4eb9f81bb9d18c7580884e2af3f 290 PRINTS PR00721 Stomatin signature 162 180 2.6E-8 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMF_RS09025 2d50e4eb9f81bb9d18c7580884e2af3f 290 PIRSF PIRSF005651 2 290 9.4E-84 T 19-04-2016 IPR010200 HflC GO:0016021|GO:0052547 AMF_RS09025 2d50e4eb9f81bb9d18c7580884e2af3f 290 SUPERFAMILY SSF117892 56 193 9.81E-25 T 19-04-2016 IPR001107 Band 7 domain AMF_RS09025 2d50e4eb9f81bb9d18c7580884e2af3f 290 PANTHER PTHR10264:SF80 5 290 1.3E-68 T 19-04-2016 AMF_RS09025 2d50e4eb9f81bb9d18c7580884e2af3f 290 PANTHER PTHR10264 5 290 1.3E-68 T 19-04-2016 IPR001972 Stomatin family GO:0016020 AMF_RS09025 2d50e4eb9f81bb9d18c7580884e2af3f 290 Pfam PF01145 SPFH domain / Band 7 family 28 203 3.7E-29 T 19-04-2016 IPR001107 Band 7 domain AMF_RS09025 2d50e4eb9f81bb9d18c7580884e2af3f 290 SMART SM00244 24 186 8.8E-30 T 19-04-2016 IPR001107 Band 7 domain AMF_RS08410 9ca6ff6969139f666ec097ffa39ae236 101 Gene3D G3DSA:4.10.830.10 41 101 8.4E-29 T 19-04-2016 AMF_RS08410 9ca6ff6969139f666ec097ffa39ae236 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 19-04-2016 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 AMF_RS08410 9ca6ff6969139f666ec097ffa39ae236 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 2.5E-23 T 19-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08410 9ca6ff6969139f666ec097ffa39ae236 101 SUPERFAMILY SSF57716 3 101 6.34E-34 T 19-04-2016 AMF_RS08410 9ca6ff6969139f666ec097ffa39ae236 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 24.215 T 19-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid AMF_RS08410 9ca6ff6969139f666ec097ffa39ae236 101 PANTHER PTHR19836 3 101 2.5E-48 T 19-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS06720 e3e6ecda4ed36c08d7e52e3219667277 262 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 253 1.2E-80 T 19-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 AMF_RS06720 e3e6ecda4ed36c08d7e52e3219667277 262 Gene3D G3DSA:3.20.20.140 2 253 2.9E-77 T 19-04-2016 AMF_RS06720 e3e6ecda4ed36c08d7e52e3219667277 262 PANTHER PTHR10060:SF20 2 256 9.7E-103 T 19-04-2016 AMF_RS06720 e3e6ecda4ed36c08d7e52e3219667277 262 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 19-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AMF_RS06720 e3e6ecda4ed36c08d7e52e3219667277 262 PANTHER PTHR10060 2 256 9.7E-103 T 19-04-2016 IPR001130 TatD family GO:0016788 AMF_RS06720 e3e6ecda4ed36c08d7e52e3219667277 262 Pfam PF01026 TatD related DNase 3 252 8.3E-72 T 19-04-2016 IPR001130 TatD family GO:0016788 AMF_RS06720 e3e6ecda4ed36c08d7e52e3219667277 262 PIRSF PIRSF005902 1 256 4.7E-72 T 19-04-2016 IPR001130 TatD family GO:0016788 AMF_RS06720 e3e6ecda4ed36c08d7e52e3219667277 262 SUPERFAMILY SSF51556 2 253 1.38E-77 T 19-04-2016 IPR032466 Metal-dependent hydrolase AMF_RS10090 308b45cf8df9b77c2662893d5f37a830 148 PIRSF PIRSF004638 2 148 6.9E-42 T 19-04-2016 IPR005265 Uncharacterised protein family UPF0093 AMF_RS10090 308b45cf8df9b77c2662893d5f37a830 148 Pfam PF03653 Uncharacterised protein family (UPF0093) 7 147 1.3E-47 T 19-04-2016 IPR005265 Uncharacterised protein family UPF0093 AMF_RS10090 308b45cf8df9b77c2662893d5f37a830 148 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 8 147 2.8E-41 T 19-04-2016 IPR014351 Conserved hypothetical protein CHP00701 AMF_RS10090 308b45cf8df9b77c2662893d5f37a830 148 PANTHER PTHR40255 7 148 7.1E-29 T 19-04-2016 AMF_RS07995 514f5bae1542b9266842751eb9d002e3 389 Pfam PF13360 PQQ-like domain 80 314 2.0E-31 T 19-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat AMF_RS07995 514f5bae1542b9266842751eb9d002e3 389 Gene3D G3DSA:2.140.10.10 60 387 3.3E-39 T 19-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain AMF_RS07995 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 150 183 200.0 T 19-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_RS07995 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 329 360 300.0 T 19-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_RS07995 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 247 278 160.0 T 19-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_RS07995 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 66 98 5.3 T 19-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_RS07995 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 284 316 16.0 T 19-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_RS07995 514f5bae1542b9266842751eb9d002e3 389 SMART SM00564 110 141 9.4 T 19-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMF_RS07995 514f5bae1542b9266842751eb9d002e3 389 SUPERFAMILY SSF50998 57 378 6.47E-45 T 19-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMF_RS05675 df839ac100e1928635fa84c4fdac1c66 220 SUPERFAMILY SSF55653 57 147 2.35E-21 T 19-04-2016 IPR020069 Ribosomal protein L9, C-terminal AMF_RS05675 df839ac100e1928635fa84c4fdac1c66 220 SUPERFAMILY SSF55658 3 56 1.74E-11 T 19-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal AMF_RS05675 df839ac100e1928635fa84c4fdac1c66 220 Gene3D G3DSA:3.40.5.10 3 50 1.6E-16 T 19-04-2016 IPR020070 Ribosomal protein L9, N-terminal AMF_RS05675 df839ac100e1928635fa84c4fdac1c66 220 TIGRFAM TIGR00158 L9: ribosomal protein bL9 3 146 1.9E-31 T 19-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05675 df839ac100e1928635fa84c4fdac1c66 220 Pfam PF03948 Ribosomal protein L9, C-terminal domain 63 145 1.8E-18 T 19-04-2016 IPR020069 Ribosomal protein L9, C-terminal AMF_RS05675 df839ac100e1928635fa84c4fdac1c66 220 PANTHER PTHR21368 2 163 3.4E-37 T 19-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05675 df839ac100e1928635fa84c4fdac1c66 220 Pfam PF01281 Ribosomal protein L9, N-terminal domain 4 45 2.3E-14 T 19-04-2016 IPR020070 Ribosomal protein L9, N-terminal AMF_RS05675 df839ac100e1928635fa84c4fdac1c66 220 Gene3D G3DSA:3.10.430.100 61 147 1.5E-21 T 19-04-2016 IPR020069 Ribosomal protein L9, C-terminal AMF_RS05675 df839ac100e1928635fa84c4fdac1c66 220 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 2 147 21.268 T 19-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS09745 1560650cfc1cfa125d899c89c0c54d91 269 PANTHER PTHR13696:SF52 1 259 1.4E-85 T 19-04-2016 AMF_RS09745 1560650cfc1cfa125d899c89c0c54d91 269 Gene3D G3DSA:3.40.50.300 3 257 1.9E-69 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09745 1560650cfc1cfa125d899c89c0c54d91 269 Pfam PF13614 AAA domain 3 177 1.0E-58 T 19-04-2016 IPR025669 AAA domain AMF_RS09745 1560650cfc1cfa125d899c89c0c54d91 269 SUPERFAMILY SSF52540 1 253 3.38E-63 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS09745 1560650cfc1cfa125d899c89c0c54d91 269 PANTHER PTHR13696 1 259 1.4E-85 T 19-04-2016 AMF_RS05995 9dd106e35c3c2199cda8d73db68ef69c 66 Gene3D G3DSA:1.20.5.1030 3 57 4.1E-12 T 19-04-2016 AMF_RS05995 9dd106e35c3c2199cda8d73db68ef69c 66 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 7 57 5.6E-11 T 19-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 AMF_RS05995 9dd106e35c3c2199cda8d73db68ef69c 66 Hamap MF_00422 Protein translocase subunit SecE [secE]. 3 58 10.421 T 19-04-2016 IPR022943 Preprotein translocase subunit SecE AMF_RS05995 9dd106e35c3c2199cda8d73db68ef69c 66 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 6 59 3.9E-11 T 19-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AMF_RS05870 d0112178cb5f7ee104d6afebdf3a394b 264 PANTHER PTHR12553 1 264 3.8E-49 T 19-04-2016 AMF_RS05870 d0112178cb5f7ee104d6afebdf3a394b 264 PANTHER PTHR12553:SF7 1 264 3.8E-49 T 19-04-2016 AMF_RS05870 d0112178cb5f7ee104d6afebdf3a394b 264 Pfam PF12706 Beta-lactamase superfamily domain 46 231 1.0E-28 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMF_RS05870 d0112178cb5f7ee104d6afebdf3a394b 264 SMART SM00849 34 210 7.7E-7 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMF_RS05870 d0112178cb5f7ee104d6afebdf3a394b 264 Gene3D G3DSA:3.60.15.10 1 264 2.0E-72 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMF_RS05870 d0112178cb5f7ee104d6afebdf3a394b 264 SUPERFAMILY SSF56281 1 264 1.52E-43 T 19-04-2016 IPR001279 Metallo-beta-lactamase AMF_RS07010 d2e41b4d325b8c1406dc9c39a96cb501 288 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 160 215 7.9E-13 T 19-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal AMF_RS07010 d2e41b4d325b8c1406dc9c39a96cb501 288 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 1 198 2.1E-60 T 19-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07010 d2e41b4d325b8c1406dc9c39a96cb501 288 SUPERFAMILY SSF55120 1 218 2.19E-64 T 19-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07010 d2e41b4d325b8c1406dc9c39a96cb501 288 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 13 159 1.7E-47 T 19-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 AMF_RS07010 d2e41b4d325b8c1406dc9c39a96cb501 288 PANTHER PTHR13767:SF2 1 286 1.4E-85 T 19-04-2016 AMF_RS07010 d2e41b4d325b8c1406dc9c39a96cb501 288 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 286 14.938 T 19-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07010 d2e41b4d325b8c1406dc9c39a96cb501 288 PANTHER PTHR13767 1 286 1.4E-85 T 19-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07545 0293acce2b9db802575ab47fb6c27470 247 PANTHER PTHR11142 1 247 2.6E-85 T 19-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07545 0293acce2b9db802575ab47fb6c27470 247 Pfam PF01416 tRNA pseudouridine synthase 145 247 2.9E-25 T 19-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07545 0293acce2b9db802575ab47fb6c27470 247 Pfam PF01416 tRNA pseudouridine synthase 5 105 5.8E-12 T 19-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07545 0293acce2b9db802575ab47fb6c27470 247 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 5 242 3.5E-57 T 19-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07545 0293acce2b9db802575ab47fb6c27470 247 Gene3D G3DSA:3.30.70.580 1 107 9.4E-33 T 19-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07545 0293acce2b9db802575ab47fb6c27470 247 PANTHER PTHR11142:SF0 1 247 2.6E-85 T 19-04-2016 AMF_RS07545 0293acce2b9db802575ab47fb6c27470 247 SUPERFAMILY SSF55120 1 247 5.61E-78 T 19-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07545 0293acce2b9db802575ab47fb6c27470 247 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 247 31.903 T 19-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07545 0293acce2b9db802575ab47fb6c27470 247 Gene3D G3DSA:3.30.70.660 109 246 1.0E-45 T 19-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS07545 0293acce2b9db802575ab47fb6c27470 247 PIRSF PIRSF001430 1 247 5.8E-72 T 19-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMF_RS09475 75915e24391753486f57313920763c83 529 Gene3D G3DSA:3.40.50.880 2 219 7.0E-50 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS09475 75915e24391753486f57313920763c83 529 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 4 201 5.9E-57 T 19-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 AMF_RS09475 75915e24391753486f57313920763c83 529 Gene3D G3DSA:3.30.300.10 396 529 2.0E-47 T 19-04-2016 AMF_RS09475 75915e24391753486f57313920763c83 529 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 1 529 46.894 T 19-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 AMF_RS09475 75915e24391753486f57313920763c83 529 SUPERFAMILY SSF52402 195 441 4.41E-47 T 19-04-2016 AMF_RS09475 75915e24391753486f57313920763c83 529 PANTHER PTHR11922:SF2 1 526 4.7E-238 T 19-04-2016 AMF_RS09475 75915e24391753486f57313920763c83 529 PANTHER PTHR11922 1 526 4.7E-238 T 19-04-2016 AMF_RS09475 75915e24391753486f57313920763c83 529 Pfam PF00958 GMP synthase C terminal domain 429 528 5.3E-39 T 19-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 AMF_RS09475 75915e24391753486f57313920763c83 529 Gene3D G3DSA:3.40.50.620 220 393 6.8E-51 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS09475 75915e24391753486f57313920763c83 529 Pfam PF00117 Glutamine amidotransferase class-I 6 197 2.9E-36 T 19-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 AMF_RS09475 75915e24391753486f57313920763c83 529 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 210 529 3.5E-132 T 19-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 AMF_RS09475 75915e24391753486f57313920763c83 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 175 188 1.3E-7 T 19-04-2016 AMF_RS09475 75915e24391753486f57313920763c83 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 82 93 1.3E-7 T 19-04-2016 AMF_RS09475 75915e24391753486f57313920763c83 529 PRINTS PR00096 Glutamine amidotransferase superfamily signature 50 59 1.3E-7 T 19-04-2016 AMF_RS09475 75915e24391753486f57313920763c83 529 SUPERFAMILY SSF54810 400 529 4.84E-46 T 19-04-2016 AMF_RS09475 75915e24391753486f57313920763c83 529 SUPERFAMILY SSF52317 2 199 1.04E-46 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS05415 d1c3a53d44f1a061f6f671c849c28e64 111 PRINTS PR00421 Thioredoxin family signature 23 31 2.4E-8 T 19-04-2016 AMF_RS05415 d1c3a53d44f1a061f6f671c849c28e64 111 PRINTS PR00421 Thioredoxin family signature 31 40 2.4E-8 T 19-04-2016 AMF_RS05415 d1c3a53d44f1a061f6f671c849c28e64 111 PRINTS PR00421 Thioredoxin family signature 71 82 2.4E-8 T 19-04-2016 AMF_RS05415 d1c3a53d44f1a061f6f671c849c28e64 111 PIRSF PIRSF000077 1 106 6.4E-34 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMF_RS05415 d1c3a53d44f1a061f6f671c849c28e64 111 SUPERFAMILY SSF52833 3 106 1.06E-31 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05415 d1c3a53d44f1a061f6f671c849c28e64 111 Pfam PF00085 Thioredoxin 5 103 1.3E-27 T 19-04-2016 IPR013766 Thioredoxin domain GO:0045454 AMF_RS05415 d1c3a53d44f1a061f6f671c849c28e64 111 TIGRFAM TIGR01068 thioredoxin: thioredoxin 10 97 1.4E-30 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMF_RS05415 d1c3a53d44f1a061f6f671c849c28e64 111 PANTHER PTHR10438 2 103 6.3E-34 T 19-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMF_RS05415 d1c3a53d44f1a061f6f671c849c28e64 111 ProSitePatterns PS00194 Thioredoxin family active site. 24 42 - T 19-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 AMF_RS05415 d1c3a53d44f1a061f6f671c849c28e64 111 Gene3D G3DSA:3.40.30.10 2 105 2.8E-32 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS09595 5d661e145ab27f06d8959c829f98b1d6 402 Gene3D G3DSA:2.40.160.20 162 167 7.9E-9 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09595 5d661e145ab27f06d8959c829f98b1d6 402 Gene3D G3DSA:2.40.160.20 284 353 7.9E-9 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09595 5d661e145ab27f06d8959c829f98b1d6 402 Gene3D G3DSA:2.40.160.20 80 127 7.9E-9 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09595 5d661e145ab27f06d8959c829f98b1d6 402 SUPERFAMILY SSF56925 284 358 1.52E-8 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09595 5d661e145ab27f06d8959c829f98b1d6 402 Pfam PF01617 Surface antigen 31 400 6.9E-32 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS07805 37ebff4babce48da930f28c9bd470430 487 PANTHER PTHR22773:SF40 1 476 2.4E-138 T 19-04-2016 AMF_RS07805 37ebff4babce48da930f28c9bd470430 487 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 370 396 6.1E-41 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMF_RS07805 37ebff4babce48da930f28c9bd470430 487 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 230 254 6.1E-41 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMF_RS07805 37ebff4babce48da930f28c9bd470430 487 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 318 337 6.1E-41 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMF_RS07805 37ebff4babce48da930f28c9bd470430 487 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 156 180 6.1E-41 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMF_RS07805 37ebff4babce48da930f28c9bd470430 487 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 126 145 6.1E-41 T 19-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 AMF_RS07805 37ebff4babce48da930f28c9bd470430 487 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 4 476 9.5E-134 T 19-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 AMF_RS07805 37ebff4babce48da930f28c9bd470430 487 Pfam PF00361 Proton-conducting membrane transporter 122 412 9.5E-63 T 19-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 AMF_RS07805 37ebff4babce48da930f28c9bd470430 487 PANTHER PTHR22773 1 476 2.4E-138 T 19-04-2016 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 319 5.0E-40 T 19-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 SUPERFAMILY SSF55681 16 236 1.8E-90 T 19-04-2016 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 SUPERFAMILY SSF55681 268 339 1.8E-90 T 19-04-2016 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.7E-14 T 19-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.7E-14 T 19-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.7E-14 T 19-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.7E-14 T 19-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 Pfam PF03129 Anticodon binding domain 336 424 1.4E-12 T 19-04-2016 IPR004154 Anticodon-binding AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 Gene3D G3DSA:3.40.50.800 329 424 5.9E-21 T 19-04-2016 IPR004154 Anticodon-binding AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 Hamap MF_01570 Proline--tRNA ligase [proS]. 1 425 59.955 T 19-04-2016 IPR023716 Proline-tRNA ligase, class IIa, type 2 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 PANTHER PTHR11451 4 424 1.8E-128 T 19-04-2016 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 SUPERFAMILY SSF52954 324 424 1.08E-22 T 19-04-2016 IPR004154 Anticodon-binding AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 246 1.1E-96 T 19-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 Gene3D G3DSA:3.30.930.10 250 328 3.3E-88 T 19-04-2016 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 Gene3D G3DSA:3.30.930.10 7 204 3.3E-88 T 19-04-2016 AMF_RS06940 b6e6e8630b202eff84b0478700e357eb 425 PANTHER PTHR11451:SF3 4 424 1.8E-128 T 19-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMF_RS07505 caf66a2d33650fa0f4105f5bdeaa4570 149 Gene3D G3DSA:1.10.287.110 2 73 1.4E-20 T 19-04-2016 IPR001623 DnaJ domain AMF_RS07505 caf66a2d33650fa0f4105f5bdeaa4570 149 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 15 143 5.1E-18 T 19-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 AMF_RS07505 caf66a2d33650fa0f4105f5bdeaa4570 149 PANTHER PTHR14021 2 83 7.6E-18 T 19-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 AMF_RS07505 caf66a2d33650fa0f4105f5bdeaa4570 149 Pfam PF00226 DnaJ domain 4 70 2.9E-7 T 19-04-2016 IPR001623 DnaJ domain AMF_RS07505 caf66a2d33650fa0f4105f5bdeaa4570 149 SMART SM00271 3 66 4.8E-7 T 19-04-2016 IPR001623 DnaJ domain AMF_RS07505 caf66a2d33650fa0f4105f5bdeaa4570 149 SUPERFAMILY SSF46565 4 74 1.57E-14 T 19-04-2016 IPR001623 DnaJ domain AMF_RS07505 caf66a2d33650fa0f4105f5bdeaa4570 149 PANTHER PTHR14021:SF15 2 83 7.6E-18 T 19-04-2016 AMF_RS05640 5d86fd2d534a8ceab19fbb2b2be6742e 78 Pfam PF01722 BolA-like protein 25 71 3.7E-13 T 19-04-2016 IPR002634 BolA protein AMF_RS05640 5d86fd2d534a8ceab19fbb2b2be6742e 78 SUPERFAMILY SSF82657 5 75 5.62E-20 T 19-04-2016 IPR002634 BolA protein AMF_RS05640 5d86fd2d534a8ceab19fbb2b2be6742e 78 Gene3D G3DSA:3.30.300.90 7 75 2.9E-17 T 19-04-2016 IPR002634 BolA protein AMF_RS05640 5d86fd2d534a8ceab19fbb2b2be6742e 78 PIRSF PIRSF003113 3 78 5.5E-18 T 19-04-2016 IPR002634 BolA protein AMF_RS08225 2cdf97322dc02733a2b6943a87af0ce1 157 SUPERFAMILY SSF53098 17 150 1.67E-35 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS08225 2cdf97322dc02733a2b6943a87af0ce1 157 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 17 152 20.605 T 19-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMF_RS08225 2cdf97322dc02733a2b6943a87af0ce1 157 SMART SM00732 17 117 3.9E-25 T 19-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 AMF_RS08225 2cdf97322dc02733a2b6943a87af0ce1 157 Gene3D G3DSA:3.30.420.140 17 152 8.7E-41 T 19-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 AMF_RS08225 2cdf97322dc02733a2b6943a87af0ce1 157 PANTHER PTHR33317 18 150 1.7E-34 T 19-04-2016 AMF_RS08225 2cdf97322dc02733a2b6943a87af0ce1 157 PANTHER PTHR33317:SF1 18 150 1.7E-34 T 19-04-2016 AMF_RS08225 2cdf97322dc02733a2b6943a87af0ce1 157 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 20 149 2.1E-24 T 19-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMF_RS08225 2cdf97322dc02733a2b6943a87af0ce1 157 Pfam PF03652 Holliday junction resolvase 18 149 7.3E-38 T 19-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMF_RS09445 6e29bb68bf9b88e7699c0dce5a4a4e75 412 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 224 279 1.0E-6 T 19-04-2016 AMF_RS09445 6e29bb68bf9b88e7699c0dce5a4a4e75 412 Gene3D G3DSA:1.25.40.10 125 130 6.9E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS09445 6e29bb68bf9b88e7699c0dce5a4a4e75 412 Gene3D G3DSA:1.25.40.10 226 373 6.9E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS09445 6e29bb68bf9b88e7699c0dce5a4a4e75 412 SUPERFAMILY SSF48452 226 373 5.55E-10 T 19-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AMF_RS09040 008c42739b674137476819e5fb433913 232 Hamap MF_00104 Ribonuclease 3 [rnc]. 13 225 28.427 T 19-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 AMF_RS09040 008c42739b674137476819e5fb433913 232 Pfam PF14622 Ribonuclease-III-like 25 149 6.3E-30 T 19-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 AMF_RS09040 008c42739b674137476819e5fb433913 232 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 15 228 2.5E-68 T 19-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 AMF_RS09040 008c42739b674137476819e5fb433913 232 Gene3D G3DSA:1.10.1520.10 13 156 1.2E-41 T 19-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 AMF_RS09040 008c42739b674137476819e5fb433913 232 SUPERFAMILY SSF54768 118 229 1.57E-26 T 19-04-2016 AMF_RS09040 008c42739b674137476819e5fb433913 232 SUPERFAMILY SSF69065 6 164 1.01E-45 T 19-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 AMF_RS09040 008c42739b674137476819e5fb433913 232 SMART SM00535 25 156 1.4E-39 T 19-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 AMF_RS09040 008c42739b674137476819e5fb433913 232 Gene3D G3DSA:3.30.160.20 161 228 9.8E-25 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMF_RS09040 008c42739b674137476819e5fb433913 232 PANTHER PTHR11207 18 228 5.2E-64 T 19-04-2016 AMF_RS09040 008c42739b674137476819e5fb433913 232 SMART SM00358 162 229 6.3E-20 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMF_RS09040 008c42739b674137476819e5fb433913 232 ProSitePatterns PS00517 Ribonuclease III family signature. 45 53 - T 19-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 AMF_RS09040 008c42739b674137476819e5fb433913 232 Pfam PF00035 Double-stranded RNA binding motif 162 227 1.1E-14 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 PIRSF PIRSF004491 2 303 4.4E-97 T 19-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 SUPERFAMILY SSF52374 12 170 2.13E-31 T 19-04-2016 AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 PANTHER PTHR22749:SF0 11 301 2.0E-95 T 19-04-2016 AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 SUPERFAMILY SSF82114 170 301 8.94E-41 T 19-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 Pfam PF01687 Riboflavin kinase 179 301 4.8E-35 T 19-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 SMART SM00904 178 302 3.2E-48 T 19-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 PANTHER PTHR22749 11 301 2.0E-95 T 19-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 14 300 5.5E-76 T 19-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 Gene3D G3DSA:2.40.30.30 175 301 7.1E-36 T 19-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 Gene3D G3DSA:3.40.50.620 10 174 1.5E-55 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS09085 cd8a37fdde56f1a75258a05093c361de 303 Pfam PF06574 FAD synthetase 10 162 8.3E-44 T 19-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 AMF_RS09140 c7ff1ffcf29de9522912d29639fcc554 779 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 5 779 21.023 T 19-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMF_RS09140 c7ff1ffcf29de9522912d29639fcc554 779 Pfam PF07244 Surface antigen variable number repeat 355 427 1.7E-12 T 19-04-2016 IPR010827 Surface antigen variable number GO:0019867 AMF_RS09140 c7ff1ffcf29de9522912d29639fcc554 779 Pfam PF07244 Surface antigen variable number repeat 178 268 6.3E-12 T 19-04-2016 IPR010827 Surface antigen variable number GO:0019867 AMF_RS09140 c7ff1ffcf29de9522912d29639fcc554 779 Pfam PF07244 Surface antigen variable number repeat 96 174 1.5E-10 T 19-04-2016 IPR010827 Surface antigen variable number GO:0019867 AMF_RS09140 c7ff1ffcf29de9522912d29639fcc554 779 PIRSF PIRSF006076 5 776 3.9E-203 T 19-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMF_RS09140 c7ff1ffcf29de9522912d29639fcc554 779 PANTHER PTHR12815:SF11 2 774 8.4E-126 T 19-04-2016 AMF_RS09140 c7ff1ffcf29de9522912d29639fcc554 779 PANTHER PTHR12815 2 774 8.4E-126 T 19-04-2016 AMF_RS09140 c7ff1ffcf29de9522912d29639fcc554 779 Pfam PF01103 Surface antigen 454 773 3.1E-52 T 19-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 AMF_RS09140 c7ff1ffcf29de9522912d29639fcc554 779 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 30 776 7.1E-203 T 19-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMF_RS09140 c7ff1ffcf29de9522912d29639fcc554 779 Gene3D G3DSA:2.40.160.50 431 764 4.8E-5 T 19-04-2016 AMF_RS05515 b183b72fab0999fea02c1e2ae4612d71 721 Pfam PF03429 Major surface protein 1B 1 721 0.0 T 19-04-2016 IPR005091 Major surface protein 1B AMF_RS08740 d9f1e9f2996a5e54c5c433e9d09fa079 204 Gene3D G3DSA:3.30.70.560 39 191 2.3E-40 T 19-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMF_RS08740 d9f1e9f2996a5e54c5c433e9d09fa079 204 SUPERFAMILY SSF55083 38 189 4.05E-39 T 19-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMF_RS08740 d9f1e9f2996a5e54c5c433e9d09fa079 204 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 39 168 8.1E-28 T 19-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMF_RS08740 d9f1e9f2996a5e54c5c433e9d09fa079 204 PANTHER PTHR20941:SF1 8 189 3.1E-42 T 19-04-2016 AMF_RS08740 d9f1e9f2996a5e54c5c433e9d09fa079 204 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 40 168 6.8E-31 T 19-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 AMF_RS08740 d9f1e9f2996a5e54c5c433e9d09fa079 204 PANTHER PTHR20941 8 189 3.1E-42 T 19-04-2016 AMF_RS08055 a6f473e6dd48b61335ff07f8815ec621 802 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 194 396 2.6E-57 T 19-04-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 AMF_RS08055 a6f473e6dd48b61335ff07f8815ec621 802 Gene3D G3DSA:3.40.50.300 601 709 1.9E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08055 a6f473e6dd48b61335ff07f8815ec621 802 Gene3D G3DSA:3.40.50.300 448 516 1.9E-12 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08055 a6f473e6dd48b61335ff07f8815ec621 802 SUPERFAMILY SSF52540 425 748 2.11E-41 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS08055 a6f473e6dd48b61335ff07f8815ec621 802 SMART SM00382 447 705 2.9E-4 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS08055 a6f473e6dd48b61335ff07f8815ec621 802 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 22 798 2.0E-250 T 19-04-2016 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 AMF_RS09260 59319f69e0ca17927b28115550e59f0a 220 Pfam PF03379 CcmB protein 5 214 4.5E-18 T 19-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09260 59319f69e0ca17927b28115550e59f0a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 74 97 5.2E-11 T 19-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09260 59319f69e0ca17927b28115550e59f0a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 191 214 5.2E-11 T 19-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09260 59319f69e0ca17927b28115550e59f0a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 51 68 5.2E-11 T 19-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09260 59319f69e0ca17927b28115550e59f0a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 99 117 5.2E-11 T 19-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS09260 59319f69e0ca17927b28115550e59f0a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 5.2E-11 T 19-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMF_RS07870 405d71f7e29e418bd6c28b9cb7c42ef2 312 Hamap MF_00082_B Acetylglutamate kinase [argB]. 33 306 27.241 T 19-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMF_RS07870 405d71f7e29e418bd6c28b9cb7c42ef2 312 Pfam PF00696 Amino acid kinase family 36 280 3.9E-26 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMF_RS07870 405d71f7e29e418bd6c28b9cb7c42ef2 312 TIGRFAM TIGR00761 argB: acetylglutamate kinase 36 281 3.9E-52 T 19-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMF_RS07870 405d71f7e29e418bd6c28b9cb7c42ef2 312 Gene3D G3DSA:3.40.1160.10 34 304 7.1E-77 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMF_RS07870 405d71f7e29e418bd6c28b9cb7c42ef2 312 SUPERFAMILY SSF53633 15 304 2.23E-69 T 19-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 AMF_RS07870 405d71f7e29e418bd6c28b9cb7c42ef2 312 PANTHER PTHR23342 1 304 3.2E-70 T 19-04-2016 AMF_RS07870 405d71f7e29e418bd6c28b9cb7c42ef2 312 PIRSF PIRSF000728 20 305 1.9E-80 T 19-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 AMF_RS08385 ee177f2ab1271147b29479ea3452b1c2 150 Gene3D G3DSA:3.100.10.10 32 139 4.3E-22 T 19-04-2016 AMF_RS08385 ee177f2ab1271147b29479ea3452b1c2 150 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 141 3.1E-40 T 19-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMF_RS08385 ee177f2ab1271147b29479ea3452b1c2 150 PANTHER PTHR12934 1 137 3.3E-34 T 19-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMF_RS08385 ee177f2ab1271147b29479ea3452b1c2 150 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 148 16.019 T 19-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 AMF_RS08385 ee177f2ab1271147b29479ea3452b1c2 150 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 139 7.1E-28 T 19-04-2016 IPR021131 Ribosomal protein L18e/L15P AMF_RS08385 ee177f2ab1271147b29479ea3452b1c2 150 SUPERFAMILY SSF52080 4 139 8.37E-33 T 19-04-2016 IPR021131 Ribosomal protein L18e/L15P AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 PANTHER PTHR24322:SF211 153 184 5.4E-26 T 19-04-2016 AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 PANTHER PTHR24322:SF211 8 137 5.4E-26 T 19-04-2016 AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 SUPERFAMILY SSF51735 4 197 1.33E-33 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 2.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.2E-11 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 Pfam PF00106 short chain dehydrogenase 6 185 4.3E-23 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 Gene3D G3DSA:3.40.50.720 6 228 6.3E-34 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 PANTHER PTHR24322 153 184 5.4E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS05260 34490fe5aa1f7b811dcdc761c237c260 235 PANTHER PTHR24322 8 137 5.4E-26 T 19-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR AMF_RS05190 4e469348ccf8192d0368dad2ce3ce8c0 69 SUPERFAMILY SSF54285 5 69 1.89E-11 T 19-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMF_RS05190 4e469348ccf8192d0368dad2ce3ce8c0 69 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 7 69 1.0E-14 T 19-04-2016 IPR010035 ThiS, thiamine-biosynthesis AMF_RS05190 4e469348ccf8192d0368dad2ce3ce8c0 69 Pfam PF02597 ThiS family 8 69 7.2E-8 T 19-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 AMF_RS05190 4e469348ccf8192d0368dad2ce3ce8c0 69 Gene3D G3DSA:3.10.20.30 5 69 2.7E-15 T 19-04-2016 IPR012675 Beta-grasp domain AMF_RS07280 0006f73bd6d2088893c65257f3fdad3f 231 PANTHER PTHR34183:SF1 44 154 1.1E-49 T 19-04-2016 AMF_RS07280 0006f73bd6d2088893c65257f3fdad3f 231 SUPERFAMILY SSF50685 59 151 3.0E-9 T 19-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMF_RS07280 0006f73bd6d2088893c65257f3fdad3f 231 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 64 158 1.2E-40 T 19-04-2016 IPR012997 Rare lipoprotein A AMF_RS07280 0006f73bd6d2088893c65257f3fdad3f 231 PANTHER PTHR34183 44 154 1.1E-49 T 19-04-2016 AMF_RS07280 0006f73bd6d2088893c65257f3fdad3f 231 Pfam PF03330 Lytic transglycolase 64 151 1.1E-22 T 19-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMF_RS09300 be0240439a472678b40d80135fd3841e 187 PANTHER PTHR10245:SF38 1 85 8.5E-23 T 19-04-2016 AMF_RS09300 be0240439a472678b40d80135fd3841e 187 Gene3D G3DSA:1.10.260.40 30 90 1.3E-15 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMF_RS09300 be0240439a472678b40d80135fd3841e 187 SMART SM00530 33 88 6.6E-12 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMF_RS09300 be0240439a472678b40d80135fd3841e 187 PANTHER PTHR10245 1 85 8.5E-23 T 19-04-2016 AMF_RS09300 be0240439a472678b40d80135fd3841e 187 SUPERFAMILY SSF47413 21 99 3.22E-23 T 19-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AMF_RS09300 be0240439a472678b40d80135fd3841e 187 Pfam PF01381 Helix-turn-helix 34 87 4.8E-12 T 19-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMF_RS08675 79c177bf971d40dd28e537e95094e767 248 Pfam PF00775 Dioxygenase 65 196 6.4E-9 T 19-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMF_RS08675 79c177bf971d40dd28e537e95094e767 248 Gene3D G3DSA:2.60.130.10 59 230 6.8E-32 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMF_RS08675 79c177bf971d40dd28e537e95094e767 248 SUPERFAMILY SSF49482 41 231 6.67E-33 T 19-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMF_RS08675 79c177bf971d40dd28e537e95094e767 248 PANTHER PTHR33711 133 227 1.1E-15 T 19-04-2016 AMF_RS08675 79c177bf971d40dd28e537e95094e767 248 PANTHER PTHR33711 63 116 1.1E-15 T 19-04-2016 AMF_RS09305 8fd05dcba3aa481620042298501f6d80 330 Gene3D G3DSA:2.40.160.20 189 262 3.4E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09305 8fd05dcba3aa481620042298501f6d80 330 Gene3D G3DSA:2.40.160.20 38 54 3.4E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09305 8fd05dcba3aa481620042298501f6d80 330 Gene3D G3DSA:2.40.160.20 118 150 3.4E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09305 8fd05dcba3aa481620042298501f6d80 330 Pfam PF01617 Surface antigen 114 284 1.2E-26 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS09305 8fd05dcba3aa481620042298501f6d80 330 SUPERFAMILY SSF56925 189 265 6.8E-13 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09305 8fd05dcba3aa481620042298501f6d80 330 SUPERFAMILY SSF56925 119 150 6.8E-13 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09305 8fd05dcba3aa481620042298501f6d80 330 SUPERFAMILY SSF56925 37 55 6.8E-13 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09220 09a2f725ae09baec89346d09bfc4b8e1 523 PANTHER PTHR32024:SF2 28 519 7.8E-103 T 19-04-2016 AMF_RS09220 09a2f725ae09baec89346d09bfc4b8e1 523 PANTHER PTHR32024 28 519 7.8E-103 T 19-04-2016 AMF_RS09220 09a2f725ae09baec89346d09bfc4b8e1 523 Pfam PF02386 Cation transport protein 329 498 2.0E-14 T 19-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AMF_RS09220 09a2f725ae09baec89346d09bfc4b8e1 523 Pfam PF02386 Cation transport protein 89 295 5.3E-25 T 19-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AMF_RS09955 b4efa5765d9b06b056c094726b6781e9 227 SUPERFAMILY SSF54427 88 226 1.45E-33 T 19-04-2016 IPR032710 NTF2-like domain AMF_RS09955 b4efa5765d9b06b056c094726b6781e9 227 Pfam PF04335 VirB8 protein 18 225 6.2E-59 T 19-04-2016 IPR007430 Bacterial virulence protein VirB8 GO:0016020 AMF_RS09955 b4efa5765d9b06b056c094726b6781e9 227 PIRSF PIRSF003299 3 227 1.1E-97 T 19-04-2016 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 AMF_RS05485 0ca519f4ce9203390243b82b0d8e7d35 165 PANTHER PTHR36918 3 163 1.9E-29 T 19-04-2016 AMF_RS05485 0ca519f4ce9203390243b82b0d8e7d35 165 PANTHER PTHR36918:SF1 3 163 1.9E-29 T 19-04-2016 AMF_RS05485 0ca519f4ce9203390243b82b0d8e7d35 165 SUPERFAMILY SSF54611 3 148 3.05E-40 T 19-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMF_RS05485 0ca519f4ce9203390243b82b0d8e7d35 165 Hamap MF_00821 Protein-export protein SecB [secB]. 1 152 26.982 T 19-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMF_RS05485 0ca519f4ce9203390243b82b0d8e7d35 165 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 2 147 2.3E-34 T 19-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMF_RS05485 0ca519f4ce9203390243b82b0d8e7d35 165 Pfam PF02556 Preprotein translocase subunit SecB 2 148 1.1E-45 T 19-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMF_RS05485 0ca519f4ce9203390243b82b0d8e7d35 165 Gene3D G3DSA:3.10.420.10 2 159 8.5E-56 T 19-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMF_RS06020 a40830d6342dc1af691107bcb4056d7e 134 Gene3D G3DSA:3.30.1390.10 60 134 2.0E-23 T 19-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMF_RS06020 a40830d6342dc1af691107bcb4056d7e 134 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 66 107 4.0E-13 T 19-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 AMF_RS06020 a40830d6342dc1af691107bcb4056d7e 134 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 64 134 3.7E-21 T 19-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 AMF_RS06020 a40830d6342dc1af691107bcb4056d7e 134 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 134 1.7E-26 T 19-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS06020 a40830d6342dc1af691107bcb4056d7e 134 SUPERFAMILY SSF54736 64 134 9.94E-17 T 19-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMF_RS06020 a40830d6342dc1af691107bcb4056d7e 134 SUPERFAMILY SSF48300 5 65 7.98E-7 T 19-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS06020 a40830d6342dc1af691107bcb4056d7e 134 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 3 134 16.738 T 19-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS06765 4d1800bb52762f93bbe399254ff4c7fe 153 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 10 147 6.5E-29 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS06765 4d1800bb52762f93bbe399254ff4c7fe 153 SUPERFAMILY SSF52121 3 151 4.58E-42 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS06765 4d1800bb52762f93bbe399254ff4c7fe 153 Gene3D G3DSA:3.40.50.960 6 149 4.3E-40 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS06765 4d1800bb52762f93bbe399254ff4c7fe 153 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 9 148 8.1E-38 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS06765 4d1800bb52762f93bbe399254ff4c7fe 153 PANTHER PTHR21058 7 152 1.1E-30 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS06765 4d1800bb52762f93bbe399254ff4c7fe 153 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 4 151 22.809 T 19-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 AMF_RS10040 d19d09ebf37380cfe2220c786ef266b5 186 Pfam PF01195 Peptidyl-tRNA hydrolase 3 170 5.7E-46 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMF_RS10040 d19d09ebf37380cfe2220c786ef266b5 186 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 167 5.0E-44 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMF_RS10040 d19d09ebf37380cfe2220c786ef266b5 186 PANTHER PTHR17224:SF1 2 148 5.1E-52 T 19-04-2016 AMF_RS10040 d19d09ebf37380cfe2220c786ef266b5 186 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 174 31.013 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMF_RS10040 d19d09ebf37380cfe2220c786ef266b5 186 Gene3D G3DSA:3.40.50.1470 2 179 5.6E-54 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMF_RS10040 d19d09ebf37380cfe2220c786ef266b5 186 SUPERFAMILY SSF53178 2 179 1.01E-53 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMF_RS10040 d19d09ebf37380cfe2220c786ef266b5 186 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 19-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMF_RS10040 d19d09ebf37380cfe2220c786ef266b5 186 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 19-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMF_RS10040 d19d09ebf37380cfe2220c786ef266b5 186 PANTHER PTHR17224 2 148 5.1E-52 T 19-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMF_RS05385 6d80a6ab7265dd3787895d834eee6eee 268 PANTHER PTHR10953 4 248 1.3E-61 T 19-04-2016 AMF_RS05385 6d80a6ab7265dd3787895d834eee6eee 268 SUPERFAMILY SSF69572 10 250 2.35E-78 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMF_RS05385 6d80a6ab7265dd3787895d834eee6eee 268 Pfam PF00899 ThiF family 12 247 1.0E-63 T 19-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMF_RS05385 6d80a6ab7265dd3787895d834eee6eee 268 PANTHER PTHR10953:SF158 4 248 1.3E-61 T 19-04-2016 AMF_RS05385 6d80a6ab7265dd3787895d834eee6eee 268 Gene3D G3DSA:3.40.50.720 11 248 7.4E-69 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 PANTHER PTHR11766:SF0 4 406 4.4E-148 T 19-04-2016 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 164 179 1.3E-21 T 19-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 185 207 1.3E-21 T 19-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 47 69 1.3E-21 T 19-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 218 230 1.3E-21 T 19-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 Gene3D G3DSA:3.10.290.10 317 412 5.8E-18 T 19-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 PANTHER PTHR11766 4 406 4.4E-148 T 19-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 Gene3D G3DSA:1.10.240.10 235 316 7.2E-32 T 19-04-2016 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 SUPERFAMILY SSF52374 7 323 2.01E-88 T 19-04-2016 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 SUPERFAMILY SSF55174 331 412 1.7E-11 T 19-04-2016 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 5 412 39.322 T 19-04-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 8 411 4.5E-99 T 19-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 Pfam PF00579 tRNA synthetases class I (W and Y) 33 323 2.0E-66 T 19-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 AMF_RS09520 b7b992852ca34400184ec05fbf82ca34 414 Gene3D G3DSA:3.40.50.620 4 234 1.1E-89 T 19-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMF_RS06990 eca7e25b304adc2205aed721fbdc94fd 404 Pfam PF00375 Sodium:dicarboxylate symporter family 12 382 4.1E-28 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMF_RS06990 eca7e25b304adc2205aed721fbdc94fd 404 Gene3D G3DSA:1.10.3860.10 46 384 1.9E-21 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMF_RS06990 eca7e25b304adc2205aed721fbdc94fd 404 SUPERFAMILY SSF118215 12 382 8.11E-38 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMF_RS05905 270fe8ee65d8d07be902fbd9a9c81479 87 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 55 11.918 T 19-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 AMF_RS05905 270fe8ee65d8d07be902fbd9a9c81479 87 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 56 6.6E-10 T 19-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 AMF_RS05905 270fe8ee65d8d07be902fbd9a9c81479 87 Pfam PF01165 Ribosomal protein S21 3 54 2.5E-10 T 19-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 AMF_RS07920 fe529ae9af89ece32c458e244dfe8017 530 SUPERFAMILY SSF56935 300 447 6.8E-9 T 19-04-2016 AMF_RS07920 fe529ae9af89ece32c458e244dfe8017 530 SUPERFAMILY SSF56935 141 190 6.8E-9 T 19-04-2016 AMF_RS07920 fe529ae9af89ece32c458e244dfe8017 530 SUPERFAMILY SSF56935 232 258 6.8E-9 T 19-04-2016 AMF_RS07920 fe529ae9af89ece32c458e244dfe8017 530 Pfam PF13609 Gram-negative porin 105 420 3.0E-9 T 19-04-2016 AMF_RS07920 fe529ae9af89ece32c458e244dfe8017 530 Gene3D G3DSA:2.40.160.10 115 193 1.4E-8 T 19-04-2016 IPR023614 Porin domain AMF_RS07920 fe529ae9af89ece32c458e244dfe8017 530 Gene3D G3DSA:2.40.160.10 225 417 1.4E-8 T 19-04-2016 IPR023614 Porin domain AMF_RS08995 adc359516da53fa42d2834b21ffee477 120 Pfam PF04956 TrbC/VIRB2 family 9 105 1.9E-17 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 Gene3D G3DSA:1.25.40.20 1873 1953 6.6E-27 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 Gene3D G3DSA:1.25.40.20 1300 1405 6.6E-27 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 Gene3D G3DSA:1.25.40.20 1114 1144 6.6E-27 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 Gene3D G3DSA:1.25.40.20 1569 1586 6.6E-27 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 1546 1578 44.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 1303 1332 0.0025 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 537 566 380.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 1114 1143 1.3 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 778 809 310.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 1868 1897 350.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 1901 1940 3.4 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 863 895 3400.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SMART SM00248 154 183 1100.0 T 19-04-2016 IPR002110 Ankyrin repeat GO:0005515 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 PANTHER PTHR24198 908 963 3.4E-17 T 19-04-2016 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 PANTHER PTHR24198 144 184 3.4E-17 T 19-04-2016 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 PANTHER PTHR24198 1542 1571 3.4E-17 T 19-04-2016 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 PANTHER PTHR24198 1300 1410 3.4E-17 T 19-04-2016 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 PANTHER PTHR24198 1110 1143 3.4E-17 T 19-04-2016 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 PANTHER PTHR24198 1861 1952 3.4E-17 T 19-04-2016 AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SUPERFAMILY SSF48403 1859 1954 1.14E-19 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SUPERFAMILY SSF48403 1112 1137 1.14E-19 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SUPERFAMILY SSF48403 1279 1410 1.14E-19 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 SUPERFAMILY SSF48403 12 259 4.78E-10 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 Gene3D G3DSA:1.25.40.20 10 260 1.0E-9 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 Gene3D G3DSA:1.25.40.20 510 564 2.9E-7 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS07455 f853e4b261e761c0d0346cce548561ca 3194 Gene3D G3DSA:1.25.40.20 730 875 2.9E-7 T 19-04-2016 IPR020683 Ankyrin repeat-containing domain AMF_RS08395 ca9c3910c34af85087f7cccd5450112f 121 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 8 121 1.4E-28 T 19-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08395 ca9c3910c34af85087f7cccd5450112f 121 Gene3D G3DSA:3.30.420.100 25 121 1.6E-24 T 19-04-2016 AMF_RS08395 ca9c3910c34af85087f7cccd5450112f 121 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 9 121 3.0E-26 T 19-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08395 ca9c3910c34af85087f7cccd5450112f 121 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 5 121 21.648 T 19-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08395 ca9c3910c34af85087f7cccd5450112f 121 PANTHER PTHR12899 7 121 5.6E-17 T 19-04-2016 AMF_RS08395 ca9c3910c34af85087f7cccd5450112f 121 SUPERFAMILY SSF53137 8 118 2.88E-35 T 19-04-2016 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 SUPERFAMILY SSF53623 102 299 8.24E-43 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 11 439 3.2E-100 T 19-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 PANTHER PTHR23135:SF2 1 443 1.6E-106 T 19-04-2016 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 114 137 - T 19-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 SUPERFAMILY SSF53244 301 442 5.95E-34 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 SUPERFAMILY SSF51984 6 98 1.96E-10 T 19-04-2016 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 PANTHER PTHR23135 1 443 1.6E-106 T 19-04-2016 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 Gene3D G3DSA:3.40.50.720 7 96 4.4E-9 T 19-04-2016 IPR016040 NAD(P)-binding domain AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 442 28.441 T 19-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 Gene3D G3DSA:3.90.190.20 303 439 2.2E-36 T 19-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 Gene3D G3DSA:3.40.1190.10 100 301 2.7E-49 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS05945 56dc29c4ee66435e0b9e1ff2a737c2fc 454 Pfam PF08245 Mur ligase middle domain 116 240 2.3E-20 T 19-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 AMF_RS07985 2a11191ca53d95fc031fec34c7b9f1fa 371 Gene3D G3DSA:2.40.50.100 95 126 4.1E-15 T 19-04-2016 AMF_RS07985 2a11191ca53d95fc031fec34c7b9f1fa 371 Gene3D G3DSA:2.40.50.100 187 218 4.1E-15 T 19-04-2016 AMF_RS07985 2a11191ca53d95fc031fec34c7b9f1fa 371 SUPERFAMILY SSF111369 82 297 4.32E-28 T 19-04-2016 AMF_RS07985 2a11191ca53d95fc031fec34c7b9f1fa 371 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 86 285 6.9E-19 T 19-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMF_RS07985 2a11191ca53d95fc031fec34c7b9f1fa 371 PANTHER PTHR30469 16 371 6.4E-35 T 19-04-2016 AMF_RS07985 2a11191ca53d95fc031fec34c7b9f1fa 371 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 70 370 2.7E-36 T 19-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 AMF_RS05535 b7b498e17e56cb21485bb4120105c673 999 Pfam PF13502 AsmA-like C-terminal region 838 955 2.3E-10 T 19-04-2016 IPR032712 AsmA-like, C-terminal AMF_RS05535 b7b498e17e56cb21485bb4120105c673 999 Pfam PF13116 Protein of unknown function 344 470 1.9E-13 T 19-04-2016 IPR025263 Domain of unknown function DUF3971 AMF_RS05265 51f741d1adbc14e4f1dbfa025b4df735 349 SUPERFAMILY SSF46589 21 105 5.75E-13 T 19-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 AMF_RS05265 51f741d1adbc14e4f1dbfa025b4df735 349 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 44 337 4.6E-102 T 19-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMF_RS05265 51f741d1adbc14e4f1dbfa025b4df735 349 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 25 93 6.1E-14 T 19-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMF_RS05265 51f741d1adbc14e4f1dbfa025b4df735 349 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 13 338 43.557 T 19-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 AMF_RS05265 51f741d1adbc14e4f1dbfa025b4df735 349 Pfam PF01409 tRNA synthetases class II core domain (F) 98 337 1.4E-99 T 19-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AMF_RS05265 51f741d1adbc14e4f1dbfa025b4df735 349 SUPERFAMILY SSF55681 98 339 8.04E-76 T 19-04-2016 AMF_RS05265 51f741d1adbc14e4f1dbfa025b4df735 349 Gene3D G3DSA:3.30.930.10 14 338 2.1E-118 T 19-04-2016 AMF_RS05265 51f741d1adbc14e4f1dbfa025b4df735 349 PANTHER PTHR11538 96 336 1.3E-89 T 19-04-2016 AMF_RS07350 709d85c09c147247ae3b0522907dd469 178 PANTHER PTHR23407 1 173 1.3E-32 T 19-04-2016 AMF_RS07350 709d85c09c147247ae3b0522907dd469 178 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 5 166 4.0E-23 T 19-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMF_RS07350 709d85c09c147247ae3b0522907dd469 178 PIRSF PIRSF006806 1 169 1.2E-28 T 19-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMF_RS07350 709d85c09c147247ae3b0522907dd469 178 SUPERFAMILY SSF100950 3 172 6.7E-40 T 19-04-2016 AMF_RS07350 709d85c09c147247ae3b0522907dd469 178 Gene3D G3DSA:3.40.50.10420 3 167 2.2E-34 T 19-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain AMF_RS07350 709d85c09c147247ae3b0522907dd469 178 PANTHER PTHR23407:SF1 1 173 1.3E-32 T 19-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMF_RS07350 709d85c09c147247ae3b0522907dd469 178 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 4 166 7.0E-31 T 19-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMF_RS05910 43fc1f948cbdd3ca539b1927487cfea8 338 Gene3D G3DSA:3.40.190.10 22 177 2.9E-24 T 19-04-2016 AMF_RS05910 43fc1f948cbdd3ca539b1927487cfea8 338 PANTHER PTHR30570 23 338 6.6E-21 T 19-04-2016 AMF_RS05910 43fc1f948cbdd3ca539b1927487cfea8 338 SUPERFAMILY SSF53850 21 333 2.64E-56 T 19-04-2016 AMF_RS05910 43fc1f948cbdd3ca539b1927487cfea8 338 Pfam PF12849 PBP superfamily domain 18 301 1.2E-31 T 19-04-2016 IPR024370 PBP domain AMF_RS09705 0ea3a060a88b125b129d83166a61e89f 128 Pfam PF04956 TrbC/VIRB2 family 13 103 9.9E-16 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS09335 a50685d5172fb628da4eed64132b0a45 189 PANTHER PTHR11178 1 189 4.3E-71 T 19-04-2016 AMF_RS09335 a50685d5172fb628da4eed64132b0a45 189 PANTHER PTHR11178:SF1 1 189 4.3E-71 T 19-04-2016 IPR017065 NFU1 iron-sulfur cluster scaffold homologue GO:0016226 AMF_RS09335 a50685d5172fb628da4eed64132b0a45 189 Pfam PF01106 NifU-like domain 121 187 2.1E-26 T 19-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMF_RS09335 a50685d5172fb628da4eed64132b0a45 189 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 129 189 3.0E-29 T 19-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMF_RS09335 a50685d5172fb628da4eed64132b0a45 189 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 3 88 2.8E-25 T 19-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal AMF_RS09335 a50685d5172fb628da4eed64132b0a45 189 SMART SM00932 3 90 1.4E-39 T 19-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal AMF_RS09335 a50685d5172fb628da4eed64132b0a45 189 SUPERFAMILY SSF110836 1 89 1.44E-25 T 19-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal AMF_RS09335 a50685d5172fb628da4eed64132b0a45 189 Gene3D G3DSA:3.30.1370.70 1 88 9.4E-27 T 19-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal AMF_RS09335 a50685d5172fb628da4eed64132b0a45 189 SUPERFAMILY SSF117916 107 189 9.59E-26 T 19-04-2016 AMF_RS09335 a50685d5172fb628da4eed64132b0a45 189 PIRSF PIRSF036773 1 189 8.2E-65 T 19-04-2016 AMF_RS10000 476d41a4d3a54a676a2414c8ac3a0231 388 PANTHER PTHR30008 1 386 1.0E-117 T 19-04-2016 AMF_RS10000 476d41a4d3a54a676a2414c8ac3a0231 388 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 6 385 9.0E-123 T 19-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMF_RS10000 476d41a4d3a54a676a2414c8ac3a0231 388 PANTHER PTHR30008:SF0 1 386 1.0E-117 T 19-04-2016 AMF_RS10000 476d41a4d3a54a676a2414c8ac3a0231 388 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 2 387 23.608 T 19-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMF_RS10000 476d41a4d3a54a676a2414c8ac3a0231 388 Pfam PF13742 OB-fold nucleic acid binding domain 5 93 5.3E-21 T 19-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 AMF_RS10000 476d41a4d3a54a676a2414c8ac3a0231 388 Pfam PF02601 Exonuclease VII, large subunit 117 309 3.4E-72 T 19-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMF_RS10000 476d41a4d3a54a676a2414c8ac3a0231 388 Pfam PF02601 Exonuclease VII, large subunit 313 382 2.1E-7 T 19-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMF_RS06190 16ab934049400feb55c847d5c290e4c8 174 Pfam PF04608 Phosphatidylglycerophosphatase A 12 167 8.0E-38 T 19-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AMF_RS06190 16ab934049400feb55c847d5c290e4c8 174 SUPERFAMILY SSF101307 7 167 1.57E-29 T 19-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AMF_RS06190 16ab934049400feb55c847d5c290e4c8 174 PIRSF PIRSF006162 2 174 1.9E-49 T 19-04-2016 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 AMF_RS06190 16ab934049400feb55c847d5c290e4c8 174 PANTHER PTHR36305 16 174 2.0E-25 T 19-04-2016 AMF_RS07235 f1d610e41d3b901b475ed47f51b9b06d 135 Pfam PF06199 Phage tail tube protein 3 126 6.2E-10 T 19-04-2016 IPR011855 Phage major tail protein TP901-1 AMF_RS06260 73d8763202340e458341c6889d8cf621 92 Pfam PF02325 YGGT family 10 85 5.9E-14 T 19-04-2016 IPR003425 CCB3/YggT GO:0016020 AMF_RS08125 169382edfc39f8c7f2f506cf14b689c3 235 Gene3D G3DSA:3.40.50.10090 137 229 1.6E-5 T 19-04-2016 AMF_RS08125 169382edfc39f8c7f2f506cf14b689c3 235 Gene3D G3DSA:3.40.50.10090 31 136 3.9E-13 T 19-04-2016 AMF_RS08125 169382edfc39f8c7f2f506cf14b689c3 235 Pfam PF02602 Uroporphyrinogen-III synthase HemD 18 226 3.3E-37 T 19-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS08125 169382edfc39f8c7f2f506cf14b689c3 235 SUPERFAMILY SSF69618 3 230 1.19E-37 T 19-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 AMF_RS05800 da25c339cb7e2513996cced3c1250900 209 SUPERFAMILY SSF56784 4 183 1.4E-32 T 19-04-2016 IPR023214 HAD-like domain AMF_RS05800 da25c339cb7e2513996cced3c1250900 209 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 98 176 6.1E-11 T 19-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AMF_RS05800 da25c339cb7e2513996cced3c1250900 209 Gene3D G3DSA:3.40.50.1000 84 186 1.9E-26 T 19-04-2016 IPR023214 HAD-like domain AMF_RS05800 da25c339cb7e2513996cced3c1250900 209 Gene3D G3DSA:3.40.50.1000 3 25 1.9E-26 T 19-04-2016 IPR023214 HAD-like domain AMF_RS05800 da25c339cb7e2513996cced3c1250900 209 PANTHER PTHR18901 8 183 4.9E-25 T 19-04-2016 AMF_RS05800 da25c339cb7e2513996cced3c1250900 209 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 178 1.0E-25 T 19-04-2016 IPR023214 HAD-like domain AMF_RS09290 348b272c7c3bd91f69e0c876c230dc09 419 SUPERFAMILY SSF81301 8 144 1.2E-39 T 19-04-2016 AMF_RS09290 348b272c7c3bd91f69e0c876c230dc09 419 Pfam PF01743 Poly A polymerase head domain 25 146 8.3E-30 T 19-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 AMF_RS09290 348b272c7c3bd91f69e0c876c230dc09 419 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 188 234 2.6E-8 T 19-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain AMF_RS09290 348b272c7c3bd91f69e0c876c230dc09 419 Gene3D G3DSA:3.30.460.10 10 144 1.9E-41 T 19-04-2016 AMF_RS09290 348b272c7c3bd91f69e0c876c230dc09 419 Gene3D G3DSA:1.10.3090.10 146 367 2.7E-32 T 19-04-2016 AMF_RS09290 348b272c7c3bd91f69e0c876c230dc09 419 PANTHER PTHR13734 8 228 1.8E-58 T 19-04-2016 AMF_RS09290 348b272c7c3bd91f69e0c876c230dc09 419 SUPERFAMILY SSF81891 146 401 2.62E-43 T 19-04-2016 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 PIRSF PIRSF003095 5 437 9.6E-69 T 19-04-2016 IPR005215 Trigger factor GO:0015031 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 Hamap MF_00303 Trigger factor [tig]. 5 425 15.062 T 19-04-2016 IPR005215 Trigger factor GO:0015031 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 SUPERFAMILY SSF54534 144 258 4.71E-19 T 19-04-2016 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 Gene3D G3DSA:3.30.70.1050 7 126 6.7E-24 T 19-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 Gene3D G3DSA:3.10.50.40 167 223 5.7E-4 T 19-04-2016 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 284 419 1.1E-12 T 19-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 Gene3D G3DSA:1.10.3120.10 224 392 5.0E-23 T 19-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 PANTHER PTHR30560 20 437 7.5E-50 T 19-04-2016 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 TIGRFAM TIGR00115 tig: trigger factor 15 418 2.1E-99 T 19-04-2016 IPR005215 Trigger factor GO:0015031 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 Pfam PF05697 Bacterial trigger factor protein (TF) 10 154 7.3E-26 T 19-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 170 238 4.2E-6 T 19-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 SUPERFAMILY SSF109998 264 436 2.49E-28 T 19-04-2016 IPR027304 Trigger factor/SurA domain AMF_RS06205 8e68cc88801912917418e77fa2a5ddfd 441 SUPERFAMILY SSF102735 7 137 1.31E-24 T 19-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMF_RS06550 6ecf93d8f01a58c24d0d66601b11a50c 880 Pfam PF13550 Putative phage tail protein 694 848 8.9E-25 T 19-04-2016 IPR032876 Tip attachment protein J AMF_RS06550 6ecf93d8f01a58c24d0d66601b11a50c 880 SUPERFAMILY SSF51445 533 634 3.25E-7 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMF_RS06550 6ecf93d8f01a58c24d0d66601b11a50c 880 SUPERFAMILY SSF51445 430 489 3.25E-7 T 19-04-2016 IPR017853 Glycoside hydrolase superfamily AMF_RS06550 6ecf93d8f01a58c24d0d66601b11a50c 880 Pfam PF13547 GTA TIM-barrel-like domain 390 619 1.6E-38 T 19-04-2016 IPR025195 GTA TIM-barrel-like domain AMF_RS09160 9302e9b9b6170aef2320ebaf023ecdef 180 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 176 3.0E-45 T 19-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 AMF_RS09160 9302e9b9b6170aef2320ebaf023ecdef 180 PANTHER PTHR14269 5 172 9.5E-40 T 19-04-2016 AMF_RS09160 9302e9b9b6170aef2320ebaf023ecdef 180 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 2.5E-16 T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMF_RS09160 9302e9b9b6170aef2320ebaf023ecdef 180 PIRSF PIRSF000847 1 179 1.1E-41 T 19-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 AMF_RS09160 9302e9b9b6170aef2320ebaf023ecdef 180 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 19-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMF_RS08140 9c69493096a1568ffd156473e5824160 280 SUPERFAMILY SSF53098 5 231 6.96E-34 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS08140 9c69493096a1568ffd156473e5824160 280 Gene3D G3DSA:3.30.420.10 49 223 4.0E-24 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS08140 9c69493096a1568ffd156473e5824160 280 Gene3D G3DSA:3.30.420.10 5 16 4.0E-24 T 19-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 AMF_RS08140 9c69493096a1568ffd156473e5824160 280 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 50 264 1.6E-78 T 19-04-2016 IPR019288 Predicted 3'-5' exonuclease, PolB-like AMF_RS08135 0806f05b38c44d28944f19a95880e26a 175 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 80 91 - T 19-04-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 AMF_RS08135 0806f05b38c44d28944f19a95880e26a 175 PANTHER PTHR41535 51 172 2.3E-19 T 19-04-2016 AMF_RS08135 0806f05b38c44d28944f19a95880e26a 175 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 57 173 1.0E-38 T 19-04-2016 IPR011969 Clan AA aspartic peptidase, C-terminal AMF_RS08135 0806f05b38c44d28944f19a95880e26a 175 PANTHER PTHR41535:SF1 51 172 2.3E-19 T 19-04-2016 AMF_RS08135 0806f05b38c44d28944f19a95880e26a 175 SUPERFAMILY SSF50630 60 164 2.36E-20 T 19-04-2016 IPR021109 Aspartic peptidase domain AMF_RS08135 0806f05b38c44d28944f19a95880e26a 175 Gene3D G3DSA:2.40.70.10 71 165 2.9E-6 T 19-04-2016 IPR021109 Aspartic peptidase domain AMF_RS08135 0806f05b38c44d28944f19a95880e26a 175 Pfam PF13975 gag-polyprotein putative aspartyl protease 71 160 6.0E-24 T 19-04-2016 AMF_RS09465 8013a57c4a1325f683d2967aca4e508d 404 TIGRFAM TIGR02049 gshA_ferroox: glutamate--cysteine ligase 9 391 1.7E-113 T 19-04-2016 IPR011718 Glutamate--cysteine ligase GshA AMF_RS09465 8013a57c4a1325f683d2967aca4e508d 404 Pfam PF08886 Glutamate-cysteine ligase 4 388 1.5E-139 T 19-04-2016 IPR011718 Glutamate--cysteine ligase GshA AMF_RS09900 f17f595c75bab7ba31ebcda7ca76f8b7 159 TIGRFAM TIGR01543 proheadase_HK97: phage prohead protease, HK97 family 11 143 1.2E-36 T 19-04-2016 IPR006433 Prohead protease AMF_RS09900 f17f595c75bab7ba31ebcda7ca76f8b7 159 Pfam PF04586 Caudovirus prohead serine protease 8 141 5.6E-37 T 19-04-2016 IPR006433 Prohead protease AMF_RS09900 f17f595c75bab7ba31ebcda7ca76f8b7 159 SUPERFAMILY SSF50789 15 132 1.11E-5 T 19-04-2016 AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 SUPERFAMILY SSF52777 184 413 9.34E-88 T 19-04-2016 AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 184 411 1.2E-82 T 19-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 PANTHER PTHR23151 1 143 8.2E-160 T 19-04-2016 AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 PANTHER PTHR23151 167 414 8.2E-160 T 19-04-2016 AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 Gene3D G3DSA:2.40.50.100 2 96 1.2E-17 T 19-04-2016 AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 Pfam PF00364 Biotin-requiring enzyme 14 78 2.0E-14 T 19-04-2016 IPR000089 Biotin/lipoyl attachment AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 5 413 9.7E-145 T 19-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 SUPERFAMILY SSF51230 7 95 1.27E-16 T 19-04-2016 IPR011053 Single hybrid motif AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 29 58 - T 19-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 Gene3D G3DSA:3.30.559.10 183 410 2.0E-90 T 19-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 PANTHER PTHR23151:SF47 1 143 8.2E-160 T 19-04-2016 AMF_RS09105 783bb0133d495588ae9ae50d5c3c267c 414 PANTHER PTHR23151:SF47 167 414 8.2E-160 T 19-04-2016 AMF_RS05090 c91dd9e43c7d4945c065158e34fcfcb2 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 50 69 - T 19-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMF_RS05090 c91dd9e43c7d4945c065158e34fcfcb2 98 Pfam PF00216 Bacterial DNA-binding protein 5 94 1.3E-22 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMF_RS05090 c91dd9e43c7d4945c065158e34fcfcb2 98 PANTHER PTHR33175:SF2 5 97 1.5E-22 T 19-04-2016 AMF_RS05090 c91dd9e43c7d4945c065158e34fcfcb2 98 Gene3D G3DSA:4.10.520.10 4 95 8.7E-22 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMF_RS05090 c91dd9e43c7d4945c065158e34fcfcb2 98 SUPERFAMILY SSF47729 5 95 8.39E-23 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMF_RS05090 c91dd9e43c7d4945c065158e34fcfcb2 98 PANTHER PTHR33175 5 97 1.5E-22 T 19-04-2016 AMF_RS05090 c91dd9e43c7d4945c065158e34fcfcb2 98 SMART SM00411 5 94 4.0E-15 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMF_RS09340 02647322cdaec475deb8000675b153bb 235 Gene3D G3DSA:2.40.160.20 122 158 5.4E-4 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09340 02647322cdaec475deb8000675b153bb 235 Gene3D G3DSA:2.40.160.20 54 72 5.4E-4 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09340 02647322cdaec475deb8000675b153bb 235 Pfam PF01617 Surface antigen 53 156 1.3E-17 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS08340 3107c9a5cd12727c70128c8d4ff18c5c 439 PANTHER PTHR30330 10 424 1.2E-61 T 19-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_RS08340 3107c9a5cd12727c70128c8d4ff18c5c 439 Pfam PF01235 Sodium:alanine symporter family 47 427 1.7E-55 T 19-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_RS08340 3107c9a5cd12727c70128c8d4ff18c5c 439 PANTHER PTHR30330:SF3 10 424 1.2E-61 T 19-04-2016 AMF_RS08340 3107c9a5cd12727c70128c8d4ff18c5c 439 PRINTS PR00175 Sodium/alanine symporter signature 197 216 1.8E-15 T 19-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_RS08340 3107c9a5cd12727c70128c8d4ff18c5c 439 PRINTS PR00175 Sodium/alanine symporter signature 405 425 1.8E-15 T 19-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_RS08340 3107c9a5cd12727c70128c8d4ff18c5c 439 PRINTS PR00175 Sodium/alanine symporter signature 79 101 1.8E-15 T 19-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_RS08340 3107c9a5cd12727c70128c8d4ff18c5c 439 PRINTS PR00175 Sodium/alanine symporter signature 169 187 1.8E-15 T 19-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_RS08340 3107c9a5cd12727c70128c8d4ff18c5c 439 PRINTS PR00175 Sodium/alanine symporter signature 345 367 1.8E-15 T 19-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AMF_RS05370 b39c7ee4942a118a792c404000f48931 123 Pfam PF04956 TrbC/VIRB2 family 8 100 3.6E-16 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS09820 db21186c3f6e9acf1d017b4ad19db730 218 PANTHER PTHR10224:SF10 5 209 1.3E-68 T 19-04-2016 AMF_RS09820 db21186c3f6e9acf1d017b4ad19db730 218 Gene3D G3DSA:3.40.50.880 2 216 3.5E-76 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS09820 db21186c3f6e9acf1d017b4ad19db730 218 SUPERFAMILY SSF52317 1 213 2.2E-47 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS09820 db21186c3f6e9acf1d017b4ad19db730 218 PANTHER PTHR10224 5 209 1.3E-68 T 19-04-2016 AMF_RS08110 f2f57507201cbaeed17289b84a1a9b0c 103 Pfam PF00830 Ribosomal L28 family 3 60 2.3E-21 T 19-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 AMF_RS08110 f2f57507201cbaeed17289b84a1a9b0c 103 TIGRFAM TIGR00009 L28: ribosomal protein bL28 2 58 3.0E-18 T 19-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08110 f2f57507201cbaeed17289b84a1a9b0c 103 Gene3D G3DSA:2.30.170.40 2 77 1.1E-26 T 19-04-2016 AMF_RS08110 f2f57507201cbaeed17289b84a1a9b0c 103 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 68 17.36 T 19-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS08110 f2f57507201cbaeed17289b84a1a9b0c 103 PANTHER PTHR13528 2 93 1.5E-26 T 19-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 AMF_RS08110 f2f57507201cbaeed17289b84a1a9b0c 103 SUPERFAMILY SSF143800 2 83 3.14E-22 T 19-04-2016 AMF_RS05705 0f6cc2eb99a00e00621e7213913be685 291 PANTHER PTHR34934 26 281 3.5E-51 T 19-04-2016 AMF_RS05705 0f6cc2eb99a00e00621e7213913be685 291 Hamap MF_01408 Thymidylate synthase ThyX [thyX]. 28 246 28.234 T 19-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMF_RS05705 0f6cc2eb99a00e00621e7213913be685 291 SUPERFAMILY SSF69796 24 245 3.27E-68 T 19-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMF_RS05705 0f6cc2eb99a00e00621e7213913be685 291 Pfam PF02511 Thymidylate synthase complementing protein 34 232 1.3E-56 T 19-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMF_RS05705 0f6cc2eb99a00e00621e7213913be685 291 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 32 238 1.5E-62 T 19-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 AMF_RS09395 883f100a50485213005afc6924a9553e 271 SUPERFAMILY SSF103025 3 206 1.88E-51 T 19-04-2016 AMF_RS09395 883f100a50485213005afc6924a9553e 271 Pfam PF01571 Aminomethyltransferase folate-binding domain 11 100 2.4E-10 T 19-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal AMF_RS09395 883f100a50485213005afc6924a9553e 271 Gene3D G3DSA:3.30.70.1400 9 93 4.0E-19 T 19-04-2016 AMF_RS09395 883f100a50485213005afc6924a9553e 271 PANTHER PTHR22602 3 214 1.2E-48 T 19-04-2016 AMF_RS09395 883f100a50485213005afc6924a9553e 271 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 191 257 2.3E-4 T 19-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMF_RS09395 883f100a50485213005afc6924a9553e 271 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 151 214 6.9E-21 T 19-04-2016 IPR017703 YgfZ/GcvT conserved site AMF_RS09395 883f100a50485213005afc6924a9553e 271 PANTHER PTHR22602:SF0 3 214 1.2E-48 T 19-04-2016 AMF_RS06835 dbdc3929e6a9b9e73b9ce8d0c7b6b943 210 PANTHER PTHR41795 10 207 2.6E-26 T 19-04-2016 AMF_RS06835 dbdc3929e6a9b9e73b9ce8d0c7b6b943 210 Pfam PF06055 Exopolysaccharide synthesis, ExoD 11 190 7.7E-56 T 19-04-2016 IPR010331 Exopolysaccharide synthesis, ExoD AMF_RS06835 dbdc3929e6a9b9e73b9ce8d0c7b6b943 210 PIRSF PIRSF033239 1 205 7.3E-62 T 19-04-2016 IPR010331 Exopolysaccharide synthesis, ExoD AMF_RS08700 acb834f0826c1e7d4a62f31affff559b 260 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 3 259 1.3E-59 T 19-04-2016 AMF_RS08700 acb834f0826c1e7d4a62f31affff559b 260 PIRSF PIRSF001586 1 260 1.0E-66 T 19-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 AMF_RS08700 acb834f0826c1e7d4a62f31affff559b 260 PANTHER PTHR10099 10 260 2.2E-55 T 19-04-2016 AMF_RS08700 acb834f0826c1e7d4a62f31affff559b 260 SMART SM01211 1 259 3.9E-94 T 19-04-2016 AMF_RS08700 acb834f0826c1e7d4a62f31affff559b 260 SUPERFAMILY SSF52317 2 259 1.62E-60 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS08700 acb834f0826c1e7d4a62f31affff559b 260 Gene3D G3DSA:3.40.50.880 5 218 2.1E-15 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS07800 a613ed2ad47840593126a9b0d564041f 481 Pfam PF00361 Proton-conducting membrane transporter 121 403 7.2E-52 T 19-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 AMF_RS07800 a613ed2ad47840593126a9b0d564041f 481 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 4 463 14.267 T 19-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMF_RS07800 a613ed2ad47840593126a9b0d564041f 481 PANTHER PTHR22773:SF41 1 471 1.3E-81 T 19-04-2016 AMF_RS07800 a613ed2ad47840593126a9b0d564041f 481 PANTHER PTHR22773 1 471 1.3E-81 T 19-04-2016 AMF_RS07000 670965095f00db9a7a36c7a667229362 295 PANTHER PTHR34138 123 263 1.7E-20 T 19-04-2016 AMF_RS07000 670965095f00db9a7a36c7a667229362 295 PANTHER PTHR34138:SF1 123 263 1.7E-20 T 19-04-2016 AMF_RS07000 670965095f00db9a7a36c7a667229362 295 Pfam PF04085 rod shape-determining protein MreC 158 268 8.4E-23 T 19-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 AMF_RS09540 5ec3753465969d5a588ba412f94a756a 327 PANTHER PTHR12001 9 327 9.5E-94 T 19-04-2016 IPR017446 Polyprenyl synthetase-related AMF_RS09540 5ec3753465969d5a588ba412f94a756a 327 SUPERFAMILY SSF48576 9 326 3.84E-85 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMF_RS09540 5ec3753465969d5a588ba412f94a756a 327 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 209 221 - T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMF_RS09540 5ec3753465969d5a588ba412f94a756a 327 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 87 101 - T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMF_RS09540 5ec3753465969d5a588ba412f94a756a 327 Gene3D G3DSA:1.10.600.10 10 326 3.7E-89 T 19-04-2016 IPR008949 Isoprenoid synthase domain AMF_RS09540 5ec3753465969d5a588ba412f94a756a 327 Pfam PF00348 Polyprenyl synthetase 37 273 5.8E-64 T 19-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 AMF_RS09540 5ec3753465969d5a588ba412f94a756a 327 PANTHER PTHR12001:SF47 9 327 9.5E-94 T 19-04-2016 AMF_RS05750 68627f4b95e63aa9c6fa54bd47120053 756 Pfam PF03429 Major surface protein 1B 1 756 0.0 T 19-04-2016 IPR005091 Major surface protein 1B AMF_RS05940 5f306848cca3d1d24dec4d0ae792bee2 218 TIGRFAM TIGR02396 diverge_rpsU: rpsU-divergently transcribed protein 18 201 2.1E-39 T 19-04-2016 IPR012762 Ubiquinone biosynthesis protein COQ9 GO:0006744 UniPathway: UPA00232 AMF_RS05940 5f306848cca3d1d24dec4d0ae792bee2 218 PANTHER PTHR21427:SF19 1 206 2.6E-19 T 19-04-2016 AMF_RS05940 5f306848cca3d1d24dec4d0ae792bee2 218 PANTHER PTHR21427 1 206 2.6E-19 T 19-04-2016 AMF_RS05940 5f306848cca3d1d24dec4d0ae792bee2 218 Pfam PF08511 COQ9 122 197 6.5E-23 T 19-04-2016 IPR013718 COQ9 UniPathway: UPA00232 AMF_RS09000 0d6bb59e40593611feefb893b9769db5 176 Pfam PF04956 TrbC/VIRB2 family 96 163 1.5E-12 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS05615 e5d8fa333bb1f0822a08c68b5e46b73e 91 Gene3D G3DSA:2.40.50.140 11 88 5.2E-25 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05615 e5d8fa333bb1f0822a08c68b5e46b73e 91 SUPERFAMILY SSF50249 10 88 1.64E-15 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05615 e5d8fa333bb1f0822a08c68b5e46b73e 91 SMART SM00357 12 89 1.9E-16 T 19-04-2016 IPR011129 Cold shock protein GO:0003676 AMF_RS05615 e5d8fa333bb1f0822a08c68b5e46b73e 91 Pfam PF00313 'Cold-shock' DNA-binding domain 44 87 4.4E-10 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMF_RS05615 e5d8fa333bb1f0822a08c68b5e46b73e 91 Pfam PF00313 'Cold-shock' DNA-binding domain 12 33 5.3E-6 T 19-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMF_RS05615 e5d8fa333bb1f0822a08c68b5e46b73e 91 PIRSF PIRSF002599 6 91 7.5E-16 T 19-04-2016 IPR012156 Cold shock, CspA GO:0003676 AMF_RS10110 bf9d7a97e9d68cc72c261c8eaea45853 473 PIRSF PIRSF004919 14 472 8.1E-120 T 19-04-2016 IPR025502 TldD KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMF_RS10110 bf9d7a97e9d68cc72c261c8eaea45853 473 Pfam PF01523 Putative modulator of DNA gyrase 34 323 3.4E-52 T 19-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- AMF_RS10110 bf9d7a97e9d68cc72c261c8eaea45853 473 PANTHER PTHR30624 7 473 1.2E-185 T 19-04-2016 AMF_RS10110 bf9d7a97e9d68cc72c261c8eaea45853 473 PANTHER PTHR30624:SF4 7 473 1.2E-185 T 19-04-2016 AMF_RS10110 bf9d7a97e9d68cc72c261c8eaea45853 473 SUPERFAMILY SSF111283 21 469 2.35E-110 T 19-04-2016 AMF_RS05215 1f82f24457f32dcbe8f9cf580e2488eb 401 SUPERFAMILY SSF54534 177 257 1.37E-6 T 19-04-2016 AMF_RS05215 1f82f24457f32dcbe8f9cf580e2488eb 401 Gene3D G3DSA:3.10.50.40 178 257 2.2E-4 T 19-04-2016 AMF_RS05215 1f82f24457f32dcbe8f9cf580e2488eb 401 SUPERFAMILY SSF109998 27 179 8.24E-19 T 19-04-2016 IPR027304 Trigger factor/SurA domain AMF_RS08015 0f83f12d09fe8ee87d5f1f91e834161b 311 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 6 285 9.3E-96 T 19-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 AMF_RS08015 0f83f12d09fe8ee87d5f1f91e834161b 311 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 5 289 36.557 T 19-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 AMF_RS08015 0f83f12d09fe8ee87d5f1f91e834161b 311 PANTHER PTHR30426 5 309 7.3E-139 T 19-04-2016 AMF_RS08015 0f83f12d09fe8ee87d5f1f91e834161b 311 Pfam PF02401 LytB protein 7 285 6.3E-90 T 19-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 AMF_RS06540 147e50e7fef53348c15cf5cc431a009e 401 Pfam PF07690 Major Facilitator Superfamily 21 359 3.2E-9 T 19-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMF_RS06540 147e50e7fef53348c15cf5cc431a009e 401 SUPERFAMILY SSF103473 38 394 1.96E-19 T 19-04-2016 IPR020846 Major facilitator superfamily domain AMF_RS06540 147e50e7fef53348c15cf5cc431a009e 401 Gene3D G3DSA:1.20.1250.20 39 184 8.3E-7 T 19-04-2016 AMF_RS08645 45fecee69a2e8575ff663f2f2893def3 94 Hamap MF_00580 10 kDa chaperonin [groS]. 2 94 19.493 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_RS08645 45fecee69a2e8575ff663f2f2893def3 94 PANTHER PTHR10772 1 92 1.4E-25 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_RS08645 45fecee69a2e8575ff663f2f2893def3 94 SMART SM00883 2 93 8.8E-35 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_RS08645 45fecee69a2e8575ff663f2f2893def3 94 SUPERFAMILY SSF50129 1 92 8.48E-25 T 19-04-2016 IPR011032 GroES-like AMF_RS08645 45fecee69a2e8575ff663f2f2893def3 94 Pfam PF00166 Chaperonin 10 Kd subunit 3 92 1.2E-26 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_RS08645 45fecee69a2e8575ff663f2f2893def3 94 PRINTS PR00297 10kDa chaperonin signature 80 93 4.5E-22 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_RS08645 45fecee69a2e8575ff663f2f2893def3 94 PRINTS PR00297 10kDa chaperonin signature 59 71 4.5E-22 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_RS08645 45fecee69a2e8575ff663f2f2893def3 94 PRINTS PR00297 10kDa chaperonin signature 24 45 4.5E-22 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_RS08645 45fecee69a2e8575ff663f2f2893def3 94 PRINTS PR00297 10kDa chaperonin signature 3 18 4.5E-22 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_RS08645 45fecee69a2e8575ff663f2f2893def3 94 Gene3D G3DSA:2.30.33.40 1 92 1.0E-27 T 19-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 Gene3D G3DSA:3.40.710.10 14 271 7.2E-80 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 PANTHER PTHR21581:SF3 22 378 1.3E-79 T 19-04-2016 AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 SMART SM00936 273 363 1.1E-24 T 19-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 140 153 9.4E-14 T 19-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 113 130 9.4E-14 T 19-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 60 71 9.4E-14 T 19-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 SUPERFAMILY SSF56601 3 273 7.19E-69 T 19-04-2016 IPR012338 Beta-lactamase/transpeptidase-like AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 Gene3D G3DSA:2.60.410.10 273 362 4.3E-21 T 19-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 PANTHER PTHR21581 22 378 1.3E-79 T 19-04-2016 AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 SUPERFAMILY SSF69189 273 365 8.44E-22 T 19-04-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 273 362 2.3E-15 T 19-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 AMF_RS09120 d98f30c36fc049e90327c9550cb2293d 380 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 250 9.4E-61 T 19-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMF_RS09600 13ad5560939baacfc712db9f73923e9f 403 SUPERFAMILY SSF56925 285 359 2.09E-8 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09600 13ad5560939baacfc712db9f73923e9f 403 Pfam PF01617 Surface antigen 31 401 1.1E-29 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS09600 13ad5560939baacfc712db9f73923e9f 403 Gene3D G3DSA:2.40.160.20 285 353 8.8E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09600 13ad5560939baacfc712db9f73923e9f 403 Gene3D G3DSA:2.40.160.20 31 48 8.8E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09600 13ad5560939baacfc712db9f73923e9f 403 Gene3D G3DSA:2.40.160.20 95 150 8.8E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS07320 8507a566615b7fcf2bfb35b235e03890 100 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 100 18.859 T 19-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07320 8507a566615b7fcf2bfb35b235e03890 100 SUPERFAMILY SSF141091 1 99 6.41E-28 T 19-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 AMF_RS07320 8507a566615b7fcf2bfb35b235e03890 100 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 98 1.5E-20 T 19-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS07320 8507a566615b7fcf2bfb35b235e03890 100 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 98 7.0E-29 T 19-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 AMF_RS07320 8507a566615b7fcf2bfb35b235e03890 100 PANTHER PTHR21349 1 96 6.1E-24 T 19-04-2016 AMF_RS09015 4a91e0e9f3f6345212395317d9760f5c 866 Gene3D G3DSA:2.40.160.20 750 866 1.2E-16 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09015 4a91e0e9f3f6345212395317d9760f5c 866 SUPERFAMILY SSF56925 747 866 8.89E-16 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09015 4a91e0e9f3f6345212395317d9760f5c 866 Pfam PF01617 Surface antigen 713 866 2.3E-64 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS09015 4a91e0e9f3f6345212395317d9760f5c 866 Pfam PF01617 Surface antigen 53 156 1.8E-16 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS06060 b54f07f8a3c7c1b0e2d3fedc445d1f50 173 Pfam PF01899 Na+/H+ ion antiporter subunit 14 147 1.3E-17 T 19-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 AMF_RS10135 d2d80fab91a854eac94905cc6add9514 606 Pfam PF03429 Major surface protein 1B 1 605 0.0 T 19-04-2016 IPR005091 Major surface protein 1B AMF_RS07560 7ed982bffa6ca18c4074ef76083d103e 128 SUPERFAMILY SSF51344 3 84 6.54E-14 T 19-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMF_RS07560 7ed982bffa6ca18c4074ef76083d103e 128 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 81 3.1E-14 T 19-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMF_RS07560 7ed982bffa6ca18c4074ef76083d103e 128 Gene3D G3DSA:2.60.15.10 2 88 4.9E-12 T 19-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 AMF_RS05085 0de5738afbfe24f9e4c16dab18bb7721 356 Pfam PF01098 Cell cycle protein 12 354 2.4E-89 T 19-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 AMF_RS05085 0de5738afbfe24f9e4c16dab18bb7721 356 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 7 351 8.3E-109 T 19-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 AMF_RS05085 0de5738afbfe24f9e4c16dab18bb7721 356 PANTHER PTHR30474 1 354 6.3E-108 T 19-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 AMF_RS06080 d76661281f1fc1cec54d11b0adbc43c1 250 Gene3D G3DSA:3.40.50.1820 46 245 2.6E-39 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMF_RS06080 d76661281f1fc1cec54d11b0adbc43c1 250 PANTHER PTHR10655 50 244 8.5E-29 T 19-04-2016 AMF_RS06080 d76661281f1fc1cec54d11b0adbc43c1 250 SUPERFAMILY SSF53474 42 243 8.31E-38 T 19-04-2016 IPR029058 Alpha/Beta hydrolase fold AMF_RS06080 d76661281f1fc1cec54d11b0adbc43c1 250 Pfam PF02230 Phospholipase/Carboxylesterase 46 242 2.7E-29 T 19-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 AMF_RS05585 be3ef50599cb496714b883c0ff9537ca 341 PANTHER PTHR23289:SF2 7 328 2.0E-94 T 19-04-2016 AMF_RS05585 be3ef50599cb496714b883c0ff9537ca 341 Pfam PF02628 Cytochrome oxidase assembly protein 9 318 1.2E-98 T 19-04-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 AMF_RS05585 be3ef50599cb496714b883c0ff9537ca 341 PANTHER PTHR23289 7 328 2.0E-94 T 19-04-2016 AMF_RS05585 be3ef50599cb496714b883c0ff9537ca 341 Hamap MF_01665 Heme A synthase [ctaA]. 4 329 23.212 T 19-04-2016 IPR023754 Heme A synthase, type 2 GO:0006784|GO:0016020|GO:0016627|GO:0055114 UniPathway: UPA00269 AMF_RS06905 1c44c367b3d93c8a6e850103c43dad85 220 SUPERFAMILY SSF53335 41 218 1.82E-35 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS06905 1c44c367b3d93c8a6e850103c43dad85 220 Gene3D G3DSA:3.40.50.150 6 218 5.2E-52 T 19-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMF_RS06905 1c44c367b3d93c8a6e850103c43dad85 220 Pfam PF01596 O-methyltransferase 36 218 1.0E-34 T 19-04-2016 IPR002935 O-methyltransferase, family 3 GO:0008171 AMF_RS06905 1c44c367b3d93c8a6e850103c43dad85 220 PANTHER PTHR10509 40 220 5.8E-43 T 19-04-2016 AMF_RS09035 576089a2eb20014bebd06df9046f71fc 204 Gene3D G3DSA:2.50.20.10 38 196 2.1E-12 T 19-04-2016 AMF_RS09035 576089a2eb20014bebd06df9046f71fc 204 SUPERFAMILY SSF89392 37 197 4.32E-23 T 19-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMF_RS09035 576089a2eb20014bebd06df9046f71fc 204 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 48 197 2.1E-10 T 19-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like AMF_RS05555 d8ac848e2b5a7f452dc295c287e62878 282 Pfam PF01148 Cytidylyltransferase family 125 273 2.9E-51 T 19-04-2016 AMF_RS05555 d8ac848e2b5a7f452dc295c287e62878 282 PANTHER PTHR13773 120 273 1.7E-47 T 19-04-2016 AMF_RS07220 78734cab819dc689531c07dde51aff3c 65 SUPERFAMILY SSF53850 2 64 6.4E-10 T 19-04-2016 AMF_RS07220 78734cab819dc689531c07dde51aff3c 65 Pfam PF16868 NMT1-like family 2 62 7.8E-13 T 19-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family AMF_RS07220 78734cab819dc689531c07dde51aff3c 65 Gene3D G3DSA:3.40.190.10 2 63 1.9E-17 T 19-04-2016 AMF_RS07485 686e73a0ba6447b15299d3a70ea7b1e7 141 Pfam PF03918 Cytochrome C biogenesis protein 31 133 5.5E-20 T 19-04-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family AMF_RS10055 2a37faf3917f75b4fd32e1a9951b63ed 178 Pfam PF01617 Surface antigen 1 178 2.1E-9 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS05295 7ca2ec2dee30b0ed84d37da48b9ee165 72 Pfam PF01617 Surface antigen 1 49 8.8E-13 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS05595 cea14b86b9dc56675fca09ad8c5ce4de 208 SMART SM00382 26 202 4.2E-7 T 19-04-2016 IPR003593 AAA+ ATPase domain AMF_RS05595 cea14b86b9dc56675fca09ad8c5ce4de 208 Gene3D G3DSA:3.40.50.300 1 189 2.6E-40 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05595 cea14b86b9dc56675fca09ad8c5ce4de 208 Pfam PF00005 ABC transporter 18 154 4.0E-22 T 19-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMF_RS05595 cea14b86b9dc56675fca09ad8c5ce4de 208 PANTHER PTHR24220 3 184 3.2E-48 T 19-04-2016 AMF_RS05595 cea14b86b9dc56675fca09ad8c5ce4de 208 PANTHER PTHR24220:SF508 3 184 3.2E-48 T 19-04-2016 AMF_RS05595 cea14b86b9dc56675fca09ad8c5ce4de 208 SUPERFAMILY SSF52540 2 191 1.27E-43 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS05595 cea14b86b9dc56675fca09ad8c5ce4de 208 ProSitePatterns PS00211 ABC transporters family signature. 127 141 - T 19-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMF_RS05595 cea14b86b9dc56675fca09ad8c5ce4de 208 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 189 1.4E-49 T 19-04-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 AMF_RS07660 63e21a7ec1260735861155e5369ccc07 326 PANTHER PTHR11075 1 326 4.8E-148 T 19-04-2016 AMF_RS07660 63e21a7ec1260735861155e5369ccc07 326 Gene3D G3DSA:3.30.160.20 182 262 1.2E-37 T 19-04-2016 IPR014720 Double-stranded RNA-binding domain AMF_RS07660 63e21a7ec1260735861155e5369ccc07 326 Pfam PF00472 RF-1 domain 184 293 4.3E-40 T 19-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMF_RS07660 63e21a7ec1260735861155e5369ccc07 326 PANTHER PTHR11075:SF6 1 326 4.8E-148 T 19-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMF_RS07660 63e21a7ec1260735861155e5369ccc07 326 Pfam PF03462 PCRF domain 1 175 3.0E-48 T 19-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 AMF_RS07660 63e21a7ec1260735861155e5369ccc07 326 SUPERFAMILY SSF75620 1 321 2.35E-120 T 19-04-2016 AMF_RS07660 63e21a7ec1260735861155e5369ccc07 326 SMART SM00937 37 150 2.7E-43 T 19-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 AMF_RS07660 63e21a7ec1260735861155e5369ccc07 326 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 200 216 - T 19-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMF_RS07660 63e21a7ec1260735861155e5369ccc07 326 Gene3D G3DSA:1.20.58.410 1 67 6.2E-10 T 19-04-2016 AMF_RS07660 63e21a7ec1260735861155e5369ccc07 326 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 1 320 5.1E-138 T 19-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMF_RS08035 9edfc5c44931004434d576bb92f13ff7 1760 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 339 536 4.5E-16 T 19-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 AMF_RS06565 45789adc005582e1830aa67e4ec139c1 383 SUPERFAMILY SSF56563 99 376 4.32E-64 T 19-04-2016 AMF_RS06565 45789adc005582e1830aa67e4ec139c1 383 Pfam PF05065 Phage capsid family 105 375 1.9E-77 T 19-04-2016 IPR024455 Phage capsid AMF_RS06565 45789adc005582e1830aa67e4ec139c1 383 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 24 375 2.6E-92 T 19-04-2016 IPR006444 Phage major capsid protein, HK97 AMF_RS08245 a8cc8b6a3b67da4a348ff4bf40c7952a 315 Gene3D G3DSA:3.10.50.40 215 282 8.4E-7 T 19-04-2016 AMF_RS08245 a8cc8b6a3b67da4a348ff4bf40c7952a 315 SUPERFAMILY SSF54534 219 283 4.32E-8 T 19-04-2016 AMF_RS05195 a75a3211548cd87f13035d592cfb13bd 258 Gene3D G3DSA:3.20.20.70 2 256 1.1E-54 T 19-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 AMF_RS05195 a75a3211548cd87f13035d592cfb13bd 258 SUPERFAMILY SSF110399 2 241 4.05E-80 T 19-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 AMF_RS05195 a75a3211548cd87f13035d592cfb13bd 258 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 249 1.0E-97 T 19-04-2016 AMF_RS05195 a75a3211548cd87f13035d592cfb13bd 258 Hamap MF_00443 Thiazole synthase [thiG]. 1 255 38.584 T 19-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 AMF_RS05195 a75a3211548cd87f13035d592cfb13bd 258 PANTHER PTHR34266 2 258 2.0E-120 T 19-04-2016 AMF_RS05520 bd8f69e73de22f58f62449da2e18e9fb 398 Pfam PF03429 Major surface protein 1B 16 68 8.0E-24 T 19-04-2016 IPR005091 Major surface protein 1B AMF_RS05520 bd8f69e73de22f58f62449da2e18e9fb 398 Pfam PF03429 Major surface protein 1B 121 382 1.3E-165 T 19-04-2016 IPR005091 Major surface protein 1B AMF_RS05520 bd8f69e73de22f58f62449da2e18e9fb 398 Pfam PF03429 Major surface protein 1B 65 123 4.5E-28 T 19-04-2016 IPR005091 Major surface protein 1B AMF_RS09390 f60d7f587cca74a873130d1abb63ddd4 379 Pfam PF01617 Surface antigen 77 379 3.4E-29 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS09390 f60d7f587cca74a873130d1abb63ddd4 379 SUPERFAMILY SSF56925 109 147 2.04E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09390 f60d7f587cca74a873130d1abb63ddd4 379 SUPERFAMILY SSF56925 257 336 2.04E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09390 f60d7f587cca74a873130d1abb63ddd4 379 Gene3D G3DSA:2.40.160.20 117 176 2.7E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09390 f60d7f587cca74a873130d1abb63ddd4 379 Gene3D G3DSA:2.40.160.20 263 333 2.7E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 PIRSF PIRSF002133 1 124 2.9E-52 T 19-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 SUPERFAMILY SSF50249 2 122 4.88E-48 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 19-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 124 37.652 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 PANTHER PTHR11652 1 117 1.1E-65 T 19-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 122 2.0E-61 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 2.1E-54 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 111 123 2.1E-54 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 78 95 2.1E-54 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 59 78 2.1E-54 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 95 111 2.1E-54 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 2.1E-54 T 19-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 Gene3D G3DSA:2.40.50.140 1 122 8.3E-61 T 19-04-2016 IPR012340 Nucleic acid-binding, OB-fold AMF_RS05970 8f81388b9855df1c5db4b48e5b2400e2 124 Pfam PF00164 Ribosomal protein S12/S23 10 122 2.7E-39 T 19-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMF_RS05765 e448ad397386d2bc0f035faf23109644 113 Pfam PF03429 Major surface protein 1B 22 105 9.1E-37 T 19-04-2016 IPR005091 Major surface protein 1B AMF_RS05765 e448ad397386d2bc0f035faf23109644 113 Pfam PF06707 Protein of unknown function (DUF1194) 58 108 2.0E-4 T 19-04-2016 IPR010607 Protein of unknown function DUF1194 AMF_RS05760 45e2af20eed7d49f21a7a13cbc37aac8 149 Pfam PF03429 Major surface protein 1B 87 125 2.4E-17 T 19-04-2016 IPR005091 Major surface protein 1B AMF_RS05760 45e2af20eed7d49f21a7a13cbc37aac8 149 Pfam PF03429 Major surface protein 1B 1 88 8.8E-53 T 19-04-2016 IPR005091 Major surface protein 1B AMF_RS06635 7dd903cbaf29e548327293edaf32d73a 460 PANTHER PTHR28641:SF1 74 459 1.3E-131 T 19-04-2016 AMF_RS06635 7dd903cbaf29e548327293edaf32d73a 460 Pfam PF05292 Malonyl-CoA decarboxylase (MCD) 93 430 1.2E-133 T 19-04-2016 IPR007956 Malonyl-CoA decarboxylase GO:0006633|GO:0050080 KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|UniPathway: UPA00340 AMF_RS06635 7dd903cbaf29e548327293edaf32d73a 460 PANTHER PTHR28641 74 459 1.3E-131 T 19-04-2016 AMF_RS07785 2cd8f9c3e92f0152afef802bd25c2f12 422 PANTHER PTHR30454 24 421 6.5E-94 T 19-04-2016 AMF_RS07785 2cd8f9c3e92f0152afef802bd25c2f12 422 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 25 413 6.1E-94 T 19-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 AMF_RS07785 2cd8f9c3e92f0152afef802bd25c2f12 422 Pfam PF04551 GcpE protein 28 414 9.3E-96 T 19-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 AMF_RS07785 2cd8f9c3e92f0152afef802bd25c2f12 422 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 21 416 25.029 T 19-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 AMF_RS07785 2cd8f9c3e92f0152afef802bd25c2f12 422 PIRSF PIRSF004640 17 422 6.8E-127 T 19-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 AMF_RS09720 f56beade53efc061f1278805ceebb15d 285 Gene3D G3DSA:2.40.160.20 48 62 5.9E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09720 f56beade53efc061f1278805ceebb15d 285 Gene3D G3DSA:2.40.160.20 105 285 5.9E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09720 f56beade53efc061f1278805ceebb15d 285 SUPERFAMILY SSF56925 106 137 3.92E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09720 f56beade53efc061f1278805ceebb15d 285 SUPERFAMILY SSF56925 168 285 3.92E-11 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09720 f56beade53efc061f1278805ceebb15d 285 Pfam PF01617 Surface antigen 45 285 5.3E-34 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS10140 5f47263f7090eb52ed0564c45a1c4cd5 78 Gene3D G3DSA:1.10.287.110 23 75 1.8E-15 T 19-04-2016 IPR001623 DnaJ domain AMF_RS10140 5f47263f7090eb52ed0564c45a1c4cd5 78 Pfam PF00226 DnaJ domain 29 60 1.1E-6 T 19-04-2016 IPR001623 DnaJ domain AMF_RS10140 5f47263f7090eb52ed0564c45a1c4cd5 78 SMART SM00271 25 75 0.0082 T 19-04-2016 IPR001623 DnaJ domain AMF_RS10140 5f47263f7090eb52ed0564c45a1c4cd5 78 SUPERFAMILY SSF46565 21 76 2.36E-15 T 19-04-2016 IPR001623 DnaJ domain AMF_RS07245 82347f0a5a86db90ed92112f6d59a2f7 184 TIGRFAM TIGR02215 phage_chp_gp8: phage conserved hypothetical protein, phiE125 gp8 family 10 168 9.5E-18 T 19-04-2016 IPR011738 Phage conserved hypothetical protein AMF_RS07245 82347f0a5a86db90ed92112f6d59a2f7 184 Pfam PF05135 Phage gp6-like head-tail connector protein 21 116 7.7E-16 T 19-04-2016 IPR021146 Phage gp6-like head-tail connector protein AMF_RS06985 4a4fc07ae93c3360f76cb5995ac11173 390 Pfam PF00375 Sodium:dicarboxylate symporter family 15 381 1.1E-30 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMF_RS06985 4a4fc07ae93c3360f76cb5995ac11173 390 Gene3D G3DSA:1.10.3860.10 44 383 6.3E-22 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMF_RS06985 4a4fc07ae93c3360f76cb5995ac11173 390 SUPERFAMILY SSF118215 33 381 5.49E-44 T 19-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 AMF_RS08520 46e50a96a7b907e56ec001e703146556 91 SUPERFAMILY SSF47729 4 89 2.36E-14 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMF_RS08520 46e50a96a7b907e56ec001e703146556 91 SMART SM00411 2 89 0.0077 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMF_RS08520 46e50a96a7b907e56ec001e703146556 91 Pfam PF00216 Bacterial DNA-binding protein 4 88 9.4E-12 T 19-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 AMF_RS08520 46e50a96a7b907e56ec001e703146556 91 Gene3D G3DSA:4.10.520.10 4 90 4.1E-14 T 19-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AMF_RS06275 fc7b8c8248ffe08ee0385cae3df09b2f 392 Pfam PF00202 Aminotransferase class-III 13 389 1.3E-105 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_RS06275 fc7b8c8248ffe08ee0385cae3df09b2f 392 Gene3D G3DSA:3.40.640.10 50 291 5.3E-69 T 19-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AMF_RS06275 fc7b8c8248ffe08ee0385cae3df09b2f 392 Gene3D G3DSA:3.90.1150.10 8 49 1.2E-35 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS06275 fc7b8c8248ffe08ee0385cae3df09b2f 392 Gene3D G3DSA:3.90.1150.10 296 391 1.2E-35 T 19-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 AMF_RS06275 fc7b8c8248ffe08ee0385cae3df09b2f 392 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 3 390 39.328 T 19-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMF_RS06275 fc7b8c8248ffe08ee0385cae3df09b2f 392 SUPERFAMILY SSF53383 7 391 8.78E-114 T 19-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase AMF_RS06275 fc7b8c8248ffe08ee0385cae3df09b2f 392 PANTHER PTHR11986:SF79 10 392 2.4E-140 T 19-04-2016 AMF_RS06275 fc7b8c8248ffe08ee0385cae3df09b2f 392 PANTHER PTHR11986 10 392 2.4E-140 T 19-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMF_RS06275 fc7b8c8248ffe08ee0385cae3df09b2f 392 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 7 389 9.3E-125 T 19-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMF_RS06465 3c8eb2759bb74a844e7f22626ddb5f16 61 Pfam PF13662 Toprim domain 1 33 1.3E-4 T 19-04-2016 IPR006171 Toprim domain AMF_RS06465 3c8eb2759bb74a844e7f22626ddb5f16 61 SUPERFAMILY SSF111304 1 60 1.15E-19 T 19-04-2016 IPR023627 Recombination protein RecR AMF_RS06465 3c8eb2759bb74a844e7f22626ddb5f16 61 PANTHER PTHR30446 1 61 2.2E-18 T 19-04-2016 AMF_RS06465 3c8eb2759bb74a844e7f22626ddb5f16 61 PANTHER PTHR30446:SF0 1 61 2.2E-18 T 19-04-2016 AMF_RS05395 4b5f1508171b9c1567fea5f74fad4f63 138 Pfam PF01617 Surface antigen 10 113 5.2E-18 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS05395 4b5f1508171b9c1567fea5f74fad4f63 138 Gene3D G3DSA:2.40.160.20 79 109 3.3E-4 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05395 4b5f1508171b9c1567fea5f74fad4f63 138 Gene3D G3DSA:2.40.160.20 11 29 3.3E-4 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09875 a2ab17a10fe58d603822093c6a697a58 194 PANTHER PTHR30309 1 194 3.9E-53 T 19-04-2016 AMF_RS09875 a2ab17a10fe58d603822093c6a697a58 194 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 9 193 3.8E-50 T 19-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 AMF_RS09875 a2ab17a10fe58d603822093c6a697a58 194 SMART SM01207 11 186 7.4E-69 T 19-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 AMF_RS09875 a2ab17a10fe58d603822093c6a697a58 194 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 8 194 19.037 T 19-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 AMF_RS09875 a2ab17a10fe58d603822093c6a697a58 194 Pfam PF02660 Glycerol-3-phosphate acyltransferase 13 185 1.4E-44 T 19-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 AMF_RS08720 56302e56e173acec5a878d606bd7fd14 151 Pfam PF07310 PAS domain 12 145 3.5E-12 T 19-04-2016 IPR009922 Protein of unknown function DUF1457 AMF_RS07960 1328ebb047b7f1a49c953bc2b1d09945 117 Gene3D G3DSA:3.40.1230.10 3 116 8.8E-17 T 19-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein AMF_RS07960 1328ebb047b7f1a49c953bc2b1d09945 117 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 8 114 5.4E-16 T 19-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein AMF_RS07960 1328ebb047b7f1a49c953bc2b1d09945 117 SUPERFAMILY SSF64076 3 115 6.28E-23 T 19-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein AMF_RS08050 2ae9b8f946fbbaf10b7d104bdbc40e19 876 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 474 690 7.9E-11 T 19-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 AMF_RS09380 a9fb6e72a4a2a1d8dc4f33df33f0033d 385 Pfam PF01617 Surface antigen 41 384 8.0E-40 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS09380 a9fb6e72a4a2a1d8dc4f33df33f0033d 385 Gene3D G3DSA:2.40.160.20 42 60 2.0E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09380 a9fb6e72a4a2a1d8dc4f33df33f0033d 385 Gene3D G3DSA:2.40.160.20 99 154 2.0E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09380 a9fb6e72a4a2a1d8dc4f33df33f0033d 385 Gene3D G3DSA:2.40.160.20 271 383 2.0E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09380 a9fb6e72a4a2a1d8dc4f33df33f0033d 385 SUPERFAMILY SSF56925 100 131 4.45E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09380 a9fb6e72a4a2a1d8dc4f33df33f0033d 385 SUPERFAMILY SSF56925 42 61 4.45E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09380 a9fb6e72a4a2a1d8dc4f33df33f0033d 385 SUPERFAMILY SSF56925 265 347 4.45E-10 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS06820 bb42820746cdf4d5ffe0f3290a256c12 119 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 9.6E-7 T 19-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AMF_RS06820 bb42820746cdf4d5ffe0f3290a256c12 119 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 9.6E-7 T 19-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AMF_RS06855 2b4fa424a64f709451bb334f4bfc056f 94 Pfam PF11020 Domain of unknown function (DUF2610) 4 83 1.0E-40 T 19-04-2016 IPR021277 Protein of unknown function DUF2610 AMF_RS05225 30896c3510b68ae6350e767e940e4da3 125 Pfam PF04956 TrbC/VIRB2 family 8 100 3.8E-16 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS07300 819f4ebb289107908ee2b43668716c48 119 Pfam PF04977 Septum formation initiator 40 117 5.3E-8 T 19-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 AMF_RS06160 150f1cca3c7a422e6e204b693674ff56 450 PANTHER PTHR21716 117 430 1.1E-43 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMF_RS06160 150f1cca3c7a422e6e204b693674ff56 450 Pfam PF01594 Domain of unknown function DUF20 101 434 2.2E-45 T 19-04-2016 IPR002549 Transmembrane protein TqsA-like AMF_RS09325 66cf0eb4b39013c44e595e28ee0b55ae 415 Gene3D G3DSA:2.40.160.20 110 152 1.5E-24 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09325 66cf0eb4b39013c44e595e28ee0b55ae 415 Gene3D G3DSA:2.40.160.20 299 415 1.5E-24 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09325 66cf0eb4b39013c44e595e28ee0b55ae 415 Gene3D G3DSA:2.40.160.20 50 67 1.5E-24 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09325 66cf0eb4b39013c44e595e28ee0b55ae 415 Pfam PF01617 Surface antigen 48 415 3.5E-109 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS09325 66cf0eb4b39013c44e595e28ee0b55ae 415 SUPERFAMILY SSF56925 299 415 1.23E-18 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09325 66cf0eb4b39013c44e595e28ee0b55ae 415 SUPERFAMILY SSF56925 48 68 1.23E-18 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09325 66cf0eb4b39013c44e595e28ee0b55ae 415 SUPERFAMILY SSF56925 111 142 1.23E-18 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05350 5d638e6f2be2f7f162240817094f6c84 389 SUPERFAMILY SSF56925 264 389 3.14E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05350 5d638e6f2be2f7f162240817094f6c84 389 SUPERFAMILY SSF56925 92 123 3.14E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05350 5d638e6f2be2f7f162240817094f6c84 389 SUPERFAMILY SSF56925 30 48 3.14E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05350 5d638e6f2be2f7f162240817094f6c84 389 Pfam PF01617 Surface antigen 28 389 3.7E-43 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS05350 5d638e6f2be2f7f162240817094f6c84 389 Gene3D G3DSA:2.40.160.20 270 389 2.0E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05350 5d638e6f2be2f7f162240817094f6c84 389 Gene3D G3DSA:2.40.160.20 91 144 2.0E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS05350 5d638e6f2be2f7f162240817094f6c84 389 Gene3D G3DSA:2.40.160.20 30 47 2.0E-12 T 19-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AMF_RS09950 92b3f5652bff383e27cfa05eac87a30e 279 Pfam PF03524 Conjugal transfer protein 37 277 6.8E-54 T 19-04-2016 IPR010258 Conjugal transfer, TrbG/VirB9/CagX AMF_RS09950 92b3f5652bff383e27cfa05eac87a30e 279 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 7 278 2.6E-84 T 19-04-2016 IPR014148 P-type conjugative transfer protein VirB9 AMF_RS08120 a5118943b31d43ee677eaa91ba97af93 307 Gene3D G3DSA:3.40.50.880 97 279 2.2E-8 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS08120 a5118943b31d43ee677eaa91ba97af93 307 Pfam PF07722 Peptidase C26 71 270 1.5E-4 T 19-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 AMF_RS08120 a5118943b31d43ee677eaa91ba97af93 307 SUPERFAMILY SSF52317 206 273 1.86E-11 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS08120 a5118943b31d43ee677eaa91ba97af93 307 SUPERFAMILY SSF52317 64 171 1.86E-11 T 19-04-2016 IPR029062 Class I glutamine amidotransferase-like AMF_RS07850 8985ec42c24ee239173dd09bf811eb19 434 PANTHER PTHR30563 65 427 1.5E-87 T 19-04-2016 AMF_RS07850 8985ec42c24ee239173dd09bf811eb19 434 Pfam PF02646 RmuC family 126 425 2.6E-92 T 19-04-2016 IPR003798 DNA recombination RmuC AMF_RS08030 549265e4f4a235c3fd285eed06234d25 205 Pfam PF09343 Conserved hypothetical protein 2217 (DUF2460) 9 203 1.2E-67 T 19-04-2016 IPR011740 Protein of unknown function DUF2460 AMF_RS08030 549265e4f4a235c3fd285eed06234d25 205 TIGRFAM TIGR02217 chp_TIGR02217: TIGR02217 family protein 9 204 3.4E-60 T 19-04-2016 IPR011740 Protein of unknown function DUF2460 AMF_RS05405 2efd6fcda05abac600406695227d7b51 85 Pfam PF04800 ETC complex I subunit conserved region 1 83 1.0E-25 T 19-04-2016 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 AMF_RS05405 2efd6fcda05abac600406695227d7b51 85 PANTHER PTHR12219 1 79 1.4E-15 T 19-04-2016 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 AMF_RS05405 2efd6fcda05abac600406695227d7b51 85 Gene3D G3DSA:3.30.160.190 1 66 2.1E-22 T 19-04-2016 AMF_RS05405 2efd6fcda05abac600406695227d7b51 85 PANTHER PTHR12219:SF18 1 79 1.4E-15 T 19-04-2016 AMF_RS05490 49864f6680129a48e95f47a9c8fbcb01 244 SUPERFAMILY SSF52833 56 222 2.78E-32 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05490 49864f6680129a48e95f47a9c8fbcb01 244 Pfam PF13462 Thioredoxin 56 223 1.1E-43 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS05490 49864f6680129a48e95f47a9c8fbcb01 244 PANTHER PTHR13887 51 225 3.8E-25 T 19-04-2016 AMF_RS05490 49864f6680129a48e95f47a9c8fbcb01 244 Gene3D G3DSA:3.40.30.10 56 224 5.7E-30 T 19-04-2016 IPR012336 Thioredoxin-like fold AMF_RS08530 df5325e608f6c6e5922abe79f717787c 139 Pfam PF05164 Cell division protein ZapA 12 89 6.4E-13 T 19-04-2016 IPR007838 Cell division protein ZapA-like AMF_RS08530 df5325e608f6c6e5922abe79f717787c 139 SUPERFAMILY SSF102829 12 92 2.75E-13 T 19-04-2016 IPR007838 Cell division protein ZapA-like AMF_RS05140 f170e50f9717e2fc7c587f29c898d233 102 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 1 70 1.1E-17 T 19-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMF_RS05140 f170e50f9717e2fc7c587f29c898d233 102 Pfam PF03840 Preprotein translocase SecG subunit 2 70 2.9E-15 T 19-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMF_RS05140 f170e50f9717e2fc7c587f29c898d233 102 PRINTS PR01651 Protein-export SecG membrane protein signature 37 53 1.6E-10 T 19-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMF_RS05140 f170e50f9717e2fc7c587f29c898d233 102 PRINTS PR01651 Protein-export SecG membrane protein signature 53 75 1.6E-10 T 19-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMF_RS05140 f170e50f9717e2fc7c587f29c898d233 102 PRINTS PR01651 Protein-export SecG membrane protein signature 1 21 1.6E-10 T 19-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMF_RS06320 8a015fc590485b10b73b8cd6322df4be 340 Gene3D G3DSA:3.40.50.300 122 287 1.3E-5 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS06320 8a015fc590485b10b73b8cd6322df4be 340 SUPERFAMILY SSF52540 3 307 3.45E-8 T 19-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMF_RS07720 e13cec1cf0102acc0b146a37fdb9061b 123 Pfam PF04956 TrbC/VIRB2 family 7 95 6.4E-16 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS09700 ee9a534c21cb86e67df8f7d489117d2e 177 Pfam PF01617 Surface antigen 1 170 2.2E-12 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS05835 fdfc4b8e47b03d877c3f549eb1789f6b 128 Pfam PF04956 TrbC/VIRB2 family 21 104 6.3E-15 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS08985 a0905329e35a21f5fc1133d008462734 809 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 218 406 2.3E-21 T 19-04-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 AMF_RS08045 d0891b3789db04c1b3a737644f00786a 1021 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 653 848 5.6E-18 T 19-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 AMF_RS05840 831d0e523e68500b7023b5bb886cdaa9 201 Pfam PF01617 Surface antigen 1 201 1.6E-24 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS08190 40087dc56404dddc110774438affb694 99 Pfam PF03334 Na+/H+ antiporter subunit 10 87 6.6E-18 T 19-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 AMF_RS05795 ec2e81eb8cd8fd5504168edd7f9b0bc4 169 Pfam PF06271 RDD family 7 152 1.5E-8 T 19-04-2016 IPR010432 RDD AMF_RS09945 53b4d9b2a2bdaa2c40629d9550d8c448 441 Pfam PF03743 Bacterial conjugation TrbI-like protein 235 434 7.1E-46 T 19-04-2016 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI AMF_RS06285 3c76fb988d4a553d0f865454fd1f5611 281 SUPERFAMILY SSF74653 184 278 2.55E-10 T 19-04-2016 AMF_RS06285 3c76fb988d4a553d0f865454fd1f5611 281 Gene3D G3DSA:3.30.1150.10 182 278 4.3E-10 T 19-04-2016 AMF_RS05160 9b2ecb67a94792439f65d8f7cd5c8ec2 906 Pfam PF13502 AsmA-like C-terminal region 677 848 1.4E-9 T 19-04-2016 IPR032712 AsmA-like, C-terminal AMF_RS08195 642ed90c27dd731b70d065ddd61aaf3c 84 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 28 79 7.4E-12 T 19-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 AMF_RS06295 759f0f96c169b9caf98504fb5f9c176c 221 PANTHER PTHR30625:SF3 3 213 1.6E-38 T 19-04-2016 AMF_RS06295 759f0f96c169b9caf98504fb5f9c176c 221 Pfam PF01618 MotA/TolQ/ExbB proton channel family 85 207 2.3E-33 T 19-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 AMF_RS06295 759f0f96c169b9caf98504fb5f9c176c 221 PANTHER PTHR30625 3 213 1.6E-38 T 19-04-2016 AMF_RS06180 0f4d5cca9fbda4391a02d374752d11ba 382 SUPERFAMILY SSF55785 251 320 7.42E-6 T 19-04-2016 IPR000014 PAS domain AMF_RS06180 0f4d5cca9fbda4391a02d374752d11ba 382 Gene3D G3DSA:3.30.450.20 251 327 1.8E-4 T 19-04-2016 AMF_RS07225 c155940ae48073b624276b52807bcec5 470 Pfam PF03237 Terminase-like family 48 451 3.4E-20 T 19-04-2016 IPR004921 Terminase, large subunit AMF_RS07225 c155940ae48073b624276b52807bcec5 470 TIGRFAM TIGR01630 psiM2_ORF9: phage uncharacterized protein, C-terminal domain 327 450 9.5E-15 T 19-04-2016 IPR006517 Archaeophage PsiM2, terminase large subunit AMF_RS06045 e18eb754841ba3102f3a697b650cb75c 147 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 7 133 4.0E-60 T 19-04-2016 IPR020143 Uncharacterised protein family, RP436 AMF_RS08765 370f618ace927f4f485e0b90d4991834 217 Pfam PF10090 Histidine phosphotransferase 31 213 3.7E-33 T 19-04-2016 IPR018762 Histidine phosphotransferase AMF_RS05660 4f6b0bd30a8ea4bf661e33d9469fb046 195 Pfam PF02674 Colicin V production protein 3 156 3.3E-30 T 19-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 AMF_RS08525 a6c95b0a3e43a4cb1f50b692647853c3 95 Pfam PF13747 Domain of unknown function (DUF4164) 3 91 5.7E-24 T 19-04-2016 IPR025310 Protein of unknown function DUF4164 AMF_RS07140 40fd87dcfe7e8930391c3305ae1a59d9 108 Pfam PF05258 Protein of unknown function (DUF721) 14 106 3.0E-15 T 19-04-2016 IPR007922 Protein of unknown function DUF721/UPF0232 AMF_RS05180 defa7eb16756f147381cb2ef06744eb6 158 Pfam PF01617 Surface antigen 1 49 3.0E-12 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS08185 f0514c312fefb5f574c4459290d6c22e 189 PANTHER PTHR33932 3 181 6.1E-27 T 19-04-2016 AMF_RS08185 f0514c312fefb5f574c4459290d6c22e 189 PANTHER PTHR33932:SF1 3 181 6.1E-27 T 19-04-2016 AMF_RS08185 f0514c312fefb5f574c4459290d6c22e 189 Pfam PF13244 Domain of unknown function (DUF4040) 16 79 8.5E-14 T 19-04-2016 IPR025383 Domain of unknown function DUF4040 AMF_RS05355 f9812950494a1f29b687b386f038d26f 133 Pfam PF04956 TrbC/VIRB2 family 11 103 1.3E-15 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS09725 c387ef4ebb0b1273e757b2dfe47e8679 352 Pfam PF01617 Surface antigen 66 352 3.2E-22 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS10150 7bba5b040dc9616f74b2265d959d640d 628 Pfam PF01617 Surface antigen 8 40 6.8E-6 T 19-04-2016 IPR002566 Surface antigen msp4 AMF_RS08785 042105358b60bbdd4ce65402d22a2d99 134 Pfam PF04956 TrbC/VIRB2 family 27 107 6.3E-14 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS09320 8393fc4182aaa9f3d08768640537562a 134 Pfam PF07306 Protein of unknown function (DUF1455) 5 134 1.6E-85 T 19-04-2016 IPR009919 Protein of unknown function DUF1455 AMF_RS09345 d1ba29d35f6ba764db93277291bc5b00 129 Pfam PF04956 TrbC/VIRB2 family 18 102 7.4E-15 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS08060 085ade6ddc96b73693bb98be9cc4eedf 98 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 8 90 2.0E-24 T 19-04-2016 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB AMF_RS09205 a2247730085ea83823d64cff10014366 166 Pfam PF02326 Plant ATP synthase F0 5 57 1.3E-4 T 19-04-2016 IPR003319 ATP synthase YMF19-like, N-terminal AMF_RS07040 b1138a0c5fcf710ab9ff1885f0489787 770 Pfam PF11670 Major surface protein 1a (MSP1a) 100 185 2.3E-38 T 19-04-2016 IPR021685 Major surface protein 1a (MSP1a) AMF_RS07040 b1138a0c5fcf710ab9ff1885f0489787 770 Pfam PF11670 Major surface protein 1a (MSP1a) 15 101 7.3E-34 T 19-04-2016 IPR021685 Major surface protein 1a (MSP1a) AMF_RS07040 b1138a0c5fcf710ab9ff1885f0489787 770 Pfam PF11670 Major surface protein 1a (MSP1a) 158 296 3.0E-82 T 19-04-2016 IPR021685 Major surface protein 1a (MSP1a) AMF_RS07040 b1138a0c5fcf710ab9ff1885f0489787 770 Pfam PF11670 Major surface protein 1a (MSP1a) 71 159 1.8E-38 T 19-04-2016 IPR021685 Major surface protein 1a (MSP1a) AMF_RS08920 df66c2debfae95325ac079d408f0053a 194 Pfam PF10691 Protein of unknown function (DUF2497) 112 191 3.1E-20 T 19-04-2016 IPR019632 Protein of unknown function DUF2497 AMF_RS09360 df7d024573ca89f67e41f90688da539a 111 Pfam PF04956 TrbC/VIRB2 family 10 85 1.2E-16 T 19-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMF_RS09210 c82028eb4388b35c7d89cba9188450b7 165 Pfam PF00430 ATP synthase B/B' CF(0) 11 135 3.7E-6 T 19-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263