AM_RS00010	SM01001	AIR carboxylase
AM_RS00025	SM00411	bacterial (prokaryotic) histone like domain
AM_RS00090	SM00382	ATPases associated with a variety of cellular activities
AM_RS00095	SM00919	Malic enzyme, NAD binding domain
AM_RS00095	SM01274	AM_RS00095
AM_RS00180	SM00357	Cold shock protein domain
AM_RS00180	SM00382	ATPases associated with a variety of cellular activities
AM_RS00180	SM00959	Rho termination factor, N-terminal domain
AM_RS00300	SM00382	ATPases associated with a variety of cellular activities
AM_RS00375	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM_RS00375	SM01240	AM_RS00375
AM_RS00390	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AM_RS00405	SM00978	AM_RS00405
AM_RS00450	SM00487	DEAD-like helicases superfamily
AM_RS00450	SM00490	helicase superfamily c-terminal domain
AM_RS00450	SM00982	AM_RS00450
AM_RS00450	SM01058	CarD-like/TRCF domain
AM_RS00520	SM00382	ATPases associated with a variety of cellular activities
AM_RS00540	SM00357	Cold shock protein domain
AM_RS00545	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM_RS00545	SM00387	Histidine kinase-like ATPases
AM_RS00545	SM00388	His Kinase A (phosphoacceptor) domain
AM_RS00550	SM00474	3'-5' exonuclease
AM_RS00555	SM00292	breast cancer carboxy-terminal domain
AM_RS00555	SM00532	Ligase N family
AM_RS00575	SM00382	ATPases associated with a variety of cellular activities
AM_RS00610	SM01219	AM_RS00610
AM_RS00615	SM00382	ATPases associated with a variety of cellular activities
AM_RS00640	SM00382	ATPases associated with a variety of cellular activities
AM_RS00655	SM00072	Guanylate kinase homologues.
AM_RS00730	SM00749	bacterial OsmY and nodulation domain
AM_RS00750	SM00382	ATPases associated with a variety of cellular activities
AM_RS00750	SM00448	cheY-homologous receiver domain
AM_RS00790	SM00849	Metallo-beta-lactamase superfamily
AM_RS00795	SM01230	AM_RS00795
AM_RS00805	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AM_RS00815	SM00881	CoA binding domain
AM_RS00875	SM00849	Metallo-beta-lactamase superfamily
AM_RS00900	SM00838	Elongation factor G C-terminus
AM_RS00900	SM00889	Elongation factor G, domain IV
AM_RS00920	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AM_RS00925	SM00649	Ribosomal protein L11/L12
AM_RS00950	SM00663	RNA polymerase I subunit A N-terminus
AM_RS01040	SM00481	DNA polymerase alpha chain like domain
AM_RS01140	SM00382	ATPases associated with a variety of cellular activities
AM_RS01140	SM00994	ClpX C4-type zinc finger
AM_RS01140	SM01086	C-terminal, D2-small domain, of ClpB protein
AM_RS01145	SM00382	ATPases associated with a variety of cellular activities
AM_RS01145	SM00464	Found in ATP-dependent protease La (LON)
AM_RS01160	SM00450	Rhodanese Homology Domain
AM_RS01175	SM01091	Transporter associated domain
AM_RS01185	SM00843	AM_RS01185
AM_RS01200	SM00387	Histidine kinase-like ATPases
AM_RS01200	SM00388	His Kinase A (phosphoacceptor) domain
AM_RS01245	SM00825	Beta-ketoacyl synthase
AM_RS01350	SM00434	DNA Topoisomerase IV
AM_RS01355	SM00478	endonuclease III
AM_RS01355	SM00525	AM_RS01355
AM_RS01365	SM00387	Histidine kinase-like ATPases
AM_RS01385	SM00998	Adenylosuccinate lyase C-terminus
AM_RS01400	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM_RS01400	SM00465	GIY-YIG type nucleases (URI domain)
AM_RS01425	SM00382	ATPases associated with a variety of cellular activities
AM_RS01435	SM00493	AM_RS01435
AM_RS01450	SM00382	ATPases associated with a variety of cellular activities
AM_RS01465	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM_RS01480	SM00861	Transketolase, pyrimidine binding domain
AM_RS01495	SM01130	AM_RS01495
AM_RS01510	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AM_RS01510	SM00534	ATPase domain of DNA mismatch repair MUTS family
AM_RS01535	SM01004	Delta-aminolevulinic acid dehydratase
AM_RS01565	SM00845	GatB domain
AM_RS01580	SM00382	ATPases associated with a variety of cellular activities
AM_RS01580	SM00760	Bacterial dnaA protein helix-turn-helix domain
AM_RS01600	SM00411	bacterial (prokaryotic) histone like domain
AM_RS01630	SM01409	AM_RS01630
AM_RS01650	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AM_RS01725	SM00841	Elongation factor P, C-terminal
AM_RS01725	SM01185	AM_RS01725
AM_RS01735	SM00363	S4 RNA-binding domain
AM_RS01740	SM00267	diguanylate cyclase
AM_RS01740	SM00448	cheY-homologous receiver domain
AM_RS01760	SM00840	AM_RS01760
AM_RS01785	SM00400	zinc finger
AM_RS01785	SM00493	AM_RS01785
AM_RS01815	SM00387	Histidine kinase-like ATPases
AM_RS01815	SM00388	His Kinase A (phosphoacceptor) domain
AM_RS01815	SM00448	cheY-homologous receiver domain
AM_RS01835	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AM_RS01835	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AM_RS01835	SM00493	AM_RS01835
AM_RS01935	SM01387	AM_RS01935
AM_RS01940	SM00316	Ribosomal protein S1-like RNA-binding domain
AM_RS01940	SM00322	K homology RNA-binding domain
AM_RS01950	SM00838	Elongation factor G C-terminus
AM_RS02070	SM00650	Ribosomal RNA adenine dimethylases
AM_RS02100	SM00905	Dihydroneopterin aldolase
AM_RS02180	SM00822	AM_RS02180
AM_RS02245	SM01192	AM_RS02245
AM_RS02245	SM01193	AM_RS02245
AM_RS02335	SM00479	AM_RS02335
AM_RS02340	SM00382	ATPases associated with a variety of cellular activities
AM_RS02375	SM00248	ankyrin repeats
AM_RS02385	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AM_RS02395	SM00387	Histidine kinase-like ATPases
AM_RS02395	SM00433	TopoisomeraseII
AM_RS02425	SM00271	DnaJ molecular chaperone homology domain
AM_RS02485	SM00382	ATPases associated with a variety of cellular activities
AM_RS02495	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM_RS02495	SM00924	MgtE intracellular N domain
AM_RS02550	SM00836	DALR anticodon binding domain
AM_RS02550	SM01016	Arginyl tRNA synthetase N terminal dom
AM_RS02595	SM00937	AM_RS02595
AM_RS02625	SM00248	ankyrin repeats
AM_RS02675	SM00838	Elongation factor G C-terminus
AM_RS02680	SM00382	ATPases associated with a variety of cellular activities
AM_RS02680	SM01086	C-terminal, D2-small domain, of ClpB protein
AM_RS02700	SM00316	Ribosomal protein S1-like RNA-binding domain
AM_RS02700	SM00322	K homology RNA-binding domain
AM_RS02760	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
AM_RS02815	SM00937	AM_RS02815
AM_RS02825	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AM_RS02825	SM01232	AM_RS02825
AM_RS02925	SM00564	beta-propeller repeat
AM_RS02940	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AM_RS02985	SM00382	ATPases associated with a variety of cellular activities
AM_RS03010	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM_RS03030	SM00878	Biotin carboxylase C-terminal domain
AM_RS03035	SM00363	S4 RNA-binding domain
AM_RS03045	SM00487	DEAD-like helicases superfamily
AM_RS03045	SM00490	helicase superfamily c-terminal domain
AM_RS03080	SM00382	ATPases associated with a variety of cellular activities
AM_RS03080	SM00962	SRP54-type protein, GTPase domain
AM_RS03080	SM00963	SRP54-type protein, helical bundle domain
AM_RS03130	SM00861	Transketolase, pyrimidine binding domain
AM_RS03145	SM00788	Adenylosuccinate synthetase
AM_RS03155	SM00732	Likely ribonuclease with RNase H fold.
AM_RS03220	SM00382	ATPases associated with a variety of cellular activities
AM_RS03230	SM00903	Flavin reductase like domain
AM_RS03270	SM00873	B3/4 domain
AM_RS03270	SM00874	tRNA synthetase B5 domain
AM_RS03270	SM00896	Ferredoxin-fold anticodon binding domain
AM_RS03280	SM00662	RNA polymerases D
AM_RS03340	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AM_RS03345	SM01374	AM_RS03345
AM_RS03365	SM00322	K homology RNA-binding domain
AM_RS03380	SM01382	AM_RS03380
AM_RS03380	SM01383	AM_RS03380
AM_RS03400	SM01403	AM_RS03400
AM_RS03420	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AM_RS03430	SM00316	Ribosomal protein S1-like RNA-binding domain
AM_RS03440	SM00411	bacterial (prokaryotic) histone like domain
AM_RS03475	SM00244	prohibitin homologues
AM_RS03480	SM00248	ankyrin repeats
AM_RS03490	SM00829	Enoylreductase
AM_RS03495	SM00382	ATPases associated with a variety of cellular activities
AM_RS03510	SM00851	MGS-like domain
AM_RS03510	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AM_RS03550	SM00883	Chaperonin 10 Kd subunit
AM_RS03565	SM00382	ATPases associated with a variety of cellular activities
AM_RS03565	SM01086	C-terminal, D2-small domain, of ClpB protein
AM_RS03605	SM01211	AM_RS03605
AM_RS03610	SM01228	AM_RS03610
AM_RS03635	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM_RS03635	SM00876	Biotin and Thiamin Synthesis associated domain
AM_RS03660	SM00028	Tetratricopeptide repeats
AM_RS03710	SM00357	Cold shock protein domain
AM_RS03710	SM00382	ATPases associated with a variety of cellular activities
AM_RS03710	SM00959	Rho termination factor, N-terminal domain
AM_RS03725	SM00382	ATPases associated with a variety of cellular activities
AM_RS03725	SM01086	C-terminal, D2-small domain, of ClpB protein
AM_RS03770	SM01209	AM_RS03770
AM_RS03770	SM01210	AM_RS03770
AM_RS03775	SM01323	AM_RS03775
AM_RS03785	SM00480	DNA polymerase III beta subunit
AM_RS03790	SM00474	3'-5' exonuclease
AM_RS03795	SM00448	cheY-homologous receiver domain
AM_RS03795	SM00862	Transcriptional regulatory protein, C terminal
AM_RS03805	SM00530	Helix-turn-helix XRE-family like proteins 
AM_RS03935	SM00244	prohibitin homologues
AM_RS03940	SM00244	prohibitin homologues
AM_RS03945	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM_RS03955	SM00358	Double-stranded RNA binding motif
AM_RS03955	SM00535	Ribonuclease III family
AM_RS04000	SM00904	Riboflavin kinase
AM_RS04035	SM00936	Penicillin-binding protein 5, C-terminal domain 
AM_RS04050	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM_RS04060	SM00935	Outer membrane protein (OmpH-like)
AM_RS04070	SM00798	AICARFT/IMPCHase bienzyme
AM_RS04070	SM00851	MGS-like domain
AM_RS04130	SM00842	Cell division protein FtsA
AM_RS04150	SM00382	ATPases associated with a variety of cellular activities
AM_RS04155	SM00957	SecA DEAD-like domain
AM_RS04155	SM00958	SecA preprotein cross-linking domain
AM_RS04190	SM00382	ATPases associated with a variety of cellular activities
AM_RS04190	SM00962	SRP54-type protein, GTPase domain
AM_RS04190	SM00963	SRP54-type protein, helical bundle domain
AM_RS04195	SM01329	AM_RS04195
AM_RS04215	SM00562	AM_RS04215
AM_RS04220	SM00530	Helix-turn-helix XRE-family like proteins 
AM_RS04255	SM00932	Scaffold protein Nfu/NifU N terminal
AM_RS04420	SM01133	AM_RS04420
AM_RS04460	SM01230	AM_RS04460
AM_RS04480	SM00382	ATPases associated with a variety of cellular activities
AM_RS04495	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AM_RS04495	SM00475	5'-3' exonuclease
AM_RS04495	SM00482	DNA polymerase A domain
AM_RS04580	SM00563	Phosphate acyltransferases
AM_RS04590	SM00986	Uracil DNA glycosylase superfamily
AM_RS04590	SM00987	UreE urease accessory protein, C-terminal domain 
AM_RS04620	SM00487	DEAD-like helicases superfamily
AM_RS04620	SM00490	helicase superfamily c-terminal domain
AM_RS04665	SM00864	Tubulin/FtsZ family, GTPase domain
AM_RS04665	SM00865	Tubulin/FtsZ family, C-terminal domain
AM_RS04685	SM00470	ParB-like nuclease domain
AM_RS04710	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AM_RS04730	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM_RS04740	SM00382	ATPases associated with a variety of cellular activities
AM_RS04745	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM_RS04805	SM00271	DnaJ molecular chaperone homology domain
AM_RS04815	SM01207	AM_RS04815
AM_RS04835	SM01091	Transporter associated domain
AM_RS04910	SM00028	Tetratricopeptide repeats
AM_RS04965	SM00487	DEAD-like helicases superfamily
AM_RS04965	SM00490	helicase superfamily c-terminal domain
AM_RS05035	SM00861	Transketolase, pyrimidine binding domain
