locus-tag class description AM_RS00010 PF00731 AIR carboxylase AM_RS00020 PF01098 Cell cycle protein AM_RS00025 PF00216 Bacterial DNA-binding protein AM_RS00055 PF00579 tRNA synthetases class I (W and Y) AM_RS00060 PF01025 GrpE AM_RS00065 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM_RS00065 PF01872 RibD C-terminal domain AM_RS00070 PF00117 Glutamine amidotransferase class-I AM_RS00070 PF06418 CTP synthase N-terminus AM_RS00075 PF03840 Preprotein translocase SecG subunit AM_RS00085 PF02899 Phage integrase, N-terminal SAM-like domain AM_RS00085 PF00589 Phage integrase family AM_RS00090 PF00005 ABC transporter AM_RS00095 PF00390 Malic enzyme, N-terminal domain AM_RS00095 PF01515 Phosphate acetyl/butaryl transferase AM_RS00095 PF03949 Malic enzyme, NAD binding domain AM_RS00105 PF00361 Proton-conducting membrane transporter AM_RS00120 PF01617 Surface antigen AM_RS00135 PF05690 Thiazole biosynthesis protein ThiG AM_RS00145 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM_RS00155 PF13145 PPIC-type PPIASE domain AM_RS00170 PF01617 Surface antigen AM_RS00175 PF01617 Surface antigen AM_RS00180 PF07497 Rho termination factor, RNA-binding domain AM_RS00180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM_RS00180 PF07498 Rho termination factor, N-terminal domain AM_RS00195 PF00453 Ribosomal protein L20 AM_RS00200 PF01409 tRNA synthetases class II core domain (F) AM_RS00200 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AM_RS00210 PF00132 Bacterial transferase hexapeptide (six repeats) AM_RS00210 PF14602 Hexapeptide repeat of succinyl-transferase AM_RS00210 PF12804 MobA-like NTP transferase domain AM_RS00215 PF00886 Ribosomal protein S16 AM_RS00220 PF08946 Osmosensory transporter coiled coil AM_RS00220 PF00083 Sugar (and other) transporter AM_RS00245 PF03966 Trm112p-like protein AM_RS00265 PF03477 ATP cone domain AM_RS00280 PF01617 Surface antigen AM_RS00300 PF00154 recA bacterial DNA recombination protein AM_RS00305 PF00156 Phosphoribosyl transferase domain AM_RS00310 PF00899 ThiF family AM_RS00315 PF01617 Surface antigen AM_RS00340 PF00085 Thioredoxin AM_RS00350 PF00676 Dehydrogenase E1 component AM_RS00375 PF00478 IMP dehydrogenase / GMP reductase domain AM_RS00375 PF00571 CBS domain AM_RS00380 PF01513 ATP-NAD kinase AM_RS00390 PF00698 Acyl transferase domain AM_RS00395 PF02223 Thymidylate kinase AM_RS00410 PF02556 Preprotein translocase subunit SecB AM_RS00415 PF13462 Thioredoxin AM_RS00420 PF00675 Insulinase (Peptidase family M16) AM_RS00420 PF05193 Peptidase M16 inactive domain AM_RS00425 PF01551 Peptidase family M23 AM_RS00425 PF04225 Opacity-associated protein A LysM-like domain AM_RS00435 PF00677 Lumazine binding domain AM_RS00450 PF00271 Helicase conserved C-terminal domain AM_RS00450 PF17757 UvrB interaction domain AM_RS00450 PF03461 TRCF domain AM_RS00450 PF02559 CarD-like/TRCF domain AM_RS00450 PF00270 DEAD/DEAH box helicase AM_RS00455 PF00075 RNase H AM_RS00465 PF00696 Amino acid kinase family AM_RS00470 PF01765 Ribosome recycling factor AM_RS00475 PF01255 Putative undecaprenyl diphosphate synthase AM_RS00495 PF01259 SAICAR synthetase AM_RS00500 PF13393 Histidyl-tRNA synthetase AM_RS00500 PF03129 Anticodon binding domain AM_RS00510 PF02628 Cytochrome oxidase assembly protein AM_RS00515 PF02548 Ketopantoate hydroxymethyltransferase AM_RS00520 PF00005 ABC transporter AM_RS00525 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM_RS00540 PF00313 'Cold-shock' DNA-binding domain AM_RS00545 PF00672 HAMP domain AM_RS00545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM_RS00545 PF00512 His Kinase A (phospho-acceptor) domain AM_RS00545 PF00989 PAS fold AM_RS00555 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AM_RS00555 PF00533 BRCA1 C Terminus (BRCT) domain AM_RS00555 PF03120 NAD-dependent DNA ligase OB-fold domain AM_RS00555 PF01653 NAD-dependent DNA ligase adenylation domain AM_RS00555 PF12826 Helix-hairpin-helix motif AM_RS00560 PF00462 Glutaredoxin AM_RS00575 PF18073 Rubredoxin metal binding domain AM_RS00590 PF01250 Ribosomal protein S6 AM_RS00595 PF01084 Ribosomal protein S18 AM_RS00600 PF03948 Ribosomal protein L9, C-terminal domain AM_RS00600 PF01281 Ribosomal protein L9, N-terminal domain AM_RS00605 PF00464 Serine hydroxymethyltransferase AM_RS00615 PF00664 ABC transporter transmembrane region AM_RS00615 PF00005 ABC transporter AM_RS00620 PF00890 FAD binding domain AM_RS00620 PF02910 Fumarate reductase flavoprotein C-term AM_RS00625 PF13085 2Fe-2S iron-sulfur cluster binding domain AM_RS00630 PF02511 Thymidylate synthase complementing protein AM_RS00635 PF07690 Major Facilitator Superfamily AM_RS00640 PF17864 RuvB AAA lid domain AM_RS00640 PF05491 RuvB C-terminal winged helix domain AM_RS00640 PF05496 Holliday junction DNA helicase RuvB P-loop domain AM_RS00645 PF07499 RuvA, C-terminal domain AM_RS00645 PF01330 RuvA N terminal domain AM_RS00650 PF01578 Cytochrome C assembly protein AM_RS00655 PF00625 Guanylate kinase AM_RS00665 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AM_RS00665 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AM_RS00695 PF00034 Cytochrome c AM_RS00705 PF00361 Proton-conducting membrane transporter AM_RS00710 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM_RS00710 PF02896 PEP-utilising enzyme, TIM barrel domain AM_RS00710 PF00391 PEP-utilising enzyme, mobile domain AM_RS00720 PF13419 Haloacid dehalogenase-like hydrolase AM_RS00730 PF04972 BON domain AM_RS00735 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AM_RS00735 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AM_RS00740 PF01820 D-ala D-ala ligase N-terminus AM_RS00740 PF07478 D-ala D-ala ligase C-terminus AM_RS00750 PF02954 Bacterial regulatory protein, Fis family AM_RS00750 PF00072 Response regulator receiver domain AM_RS00750 PF00158 Sigma-54 interaction domain AM_RS00760 PF01617 Surface antigen AM_RS00765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM_RS00765 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM_RS00800 PF00528 Binding-protein-dependent transport system inner membrane component AM_RS00805 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM_RS00805 PF01411 tRNA synthetases class II (A) AM_RS00815 PF02629 CoA binding domain AM_RS00815 PF00549 CoA-ligase AM_RS00820 PF08442 ATP-grasp domain AM_RS00820 PF00549 CoA-ligase AM_RS00825 PF01165 Ribosomal protein S21 AM_RS00840 PF03060 Nitronate monooxygenase AM_RS00845 PF01292 Prokaryotic cytochrome b561 AM_RS00850 PF00528 Binding-protein-dependent transport system inner membrane component AM_RS00855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM_RS00855 PF00529 HlyD membrane-fusion protein of T1SS AM_RS00865 PF08245 Mur ligase middle domain AM_RS00870 PF04052 TolB amino-terminal domain AM_RS00870 PF07676 WD40-like Beta Propeller Repeat AM_RS00875 PF12706 Beta-lactamase superfamily domain AM_RS00875 PF17770 Ribonuclease J C-terminal domain AM_RS00875 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AM_RS00890 PF00164 Ribosomal protein S12/S23 AM_RS00895 PF00177 Ribosomal protein S7p/S5e AM_RS00900 PF03144 Elongation factor Tu domain 2 AM_RS00900 PF00009 Elongation factor Tu GTP binding domain AM_RS00900 PF03764 Elongation factor G, domain IV AM_RS00900 PF14492 Elongation Factor G, domain II AM_RS00900 PF00679 Elongation factor G C-terminus AM_RS00905 PF03144 Elongation factor Tu domain 2 AM_RS00905 PF00009 Elongation factor Tu GTP binding domain AM_RS00905 PF03143 Elongation factor Tu C-terminal domain AM_RS00920 PF02357 Transcription termination factor nusG AM_RS00920 PF00467 KOW motif AM_RS00925 PF03946 Ribosomal protein L11, N-terminal domain AM_RS00925 PF00298 Ribosomal protein L11, RNA binding domain AM_RS00930 PF00687 Ribosomal protein L1p/L10e family AM_RS00935 PF00466 Ribosomal protein L10 AM_RS00940 PF00542 Ribosomal protein L7/L12 C-terminal domain AM_RS00945 PF00562 RNA polymerase Rpb2, domain 6 AM_RS00945 PF10385 RNA polymerase beta subunit external 1 domain AM_RS00945 PF04560 RNA polymerase Rpb2, domain 7 AM_RS00945 PF04565 RNA polymerase Rpb2, domain 3 AM_RS00945 PF04563 RNA polymerase beta subunit AM_RS00945 PF04561 RNA polymerase Rpb2, domain 2 AM_RS00950 PF04997 RNA polymerase Rpb1, domain 1 AM_RS00950 PF05000 RNA polymerase Rpb1, domain 4 AM_RS00950 PF04998 RNA polymerase Rpb1, domain 5 AM_RS00950 PF04983 RNA polymerase Rpb1, domain 3 AM_RS00950 PF00623 RNA polymerase Rpb1, domain 2 AM_RS00955 PF01351 Ribonuclease HII AM_RS00975 PF00155 Aminotransferase class I and II AM_RS00985 PF03309 Type III pantothenate kinase AM_RS00990 PF01180 Dihydroorotate dehydrogenase AM_RS00995 PF01327 Polypeptide deformylase AM_RS01000 PF02230 Phospholipase/Carboxylesterase AM_RS01010 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AM_RS01010 PF01243 Pyridoxamine 5'-phosphate oxidase AM_RS01015 PF08245 Mur ligase middle domain AM_RS01015 PF02875 Mur ligase family, glutamate ligase domain AM_RS01025 PF01053 Cys/Met metabolism PLP-dependent enzyme AM_RS01040 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AM_RS01040 PF14579 Helix-hairpin-helix motif AM_RS01040 PF02811 PHP domain AM_RS01040 PF07733 Bacterial DNA polymerase III alpha NTPase domain AM_RS01045 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM_RS01055 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM_RS01060 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM_RS01070 PF08543 Phosphomethylpyrimidine kinase AM_RS01070 PF02581 Thiamine monophosphate synthase AM_RS01080 PF01594 AI-2E family transporter AM_RS01130 PF05697 Bacterial trigger factor protein (TF) AM_RS01130 PF05698 Bacterial trigger factor protein (TF) C-terminus AM_RS01130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM_RS01135 PF00574 Clp protease AM_RS01140 PF06689 ClpX C4-type zinc finger AM_RS01140 PF10431 C-terminal, D2-small domain, of ClpB protein AM_RS01140 PF07724 AAA domain (Cdc48 subfamily) AM_RS01145 PF02190 ATP-dependent protease La (LON) substrate-binding domain AM_RS01145 PF05362 Lon protease (S16) C-terminal proteolytic domain AM_RS01145 PF00004 ATPase family associated with various cellular activities (AAA) AM_RS01155 PF00551 Formyl transferase AM_RS01155 PF02911 Formyl transferase, C-terminal domain AM_RS01160 PF17773 UPF0176 acylphosphatase like domain AM_RS01160 PF00581 Rhodanese-like domain AM_RS01165 PF03618 Kinase/pyrophosphorylase AM_RS01170 PF02581 Thiamine monophosphate synthase AM_RS01175 PF00571 CBS domain AM_RS01175 PF03471 Transporter associated domain AM_RS01175 PF01595 Cyclin M transmembrane N-terminal domain AM_RS01185 PF17854 FtsK alpha domain AM_RS01185 PF09397 Ftsk gamma domain AM_RS01185 PF01580 FtsK/SpoIIIE family AM_RS01185 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AM_RS01195 PF00202 Aminotransferase class-III AM_RS01200 PF00512 His Kinase A (phospho-acceptor) domain AM_RS01200 PF00989 PAS fold AM_RS01200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM_RS01210 PF02472 Biopolymer transport protein ExbD/TolR AM_RS01215 PF01618 MotA/TolQ/ExbB proton channel family AM_RS01230 PF02481 DNA recombination-mediator protein A AM_RS01230 PF17782 DprA winged helix domain AM_RS01245 PF00109 Beta-ketoacyl synthase, N-terminal domain AM_RS01245 PF02801 Beta-ketoacyl synthase, C-terminal domain AM_RS01250 PF00550 Phosphopantetheine attachment site AM_RS01260 PF00471 Ribosomal protein L33 AM_RS01270 PF02600 Disulfide bond formation protein DsbB AM_RS01290 PF03232 Ubiquinone biosynthesis protein COQ7 AM_RS01340 PF00580 UvrD/REP helicase N-terminal domain AM_RS01340 PF13361 UvrD-like helicase C-terminal domain AM_RS01350 PF00521 DNA gyrase/topoisomerase IV, subunit A AM_RS01350 PF03989 DNA gyrase C-terminal domain, beta-propeller AM_RS01355 PF00730 HhH-GPD superfamily base excision DNA repair protein AM_RS01355 PF00633 Helix-hairpin-helix motif AM_RS01355 PF10576 Iron-sulfur binding domain of endonuclease III AM_RS01365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM_RS01365 PF00183 Hsp90 protein AM_RS01380 PF02132 RecR protein AM_RS01380 PF13662 Toprim domain AM_RS01385 PF10397 Adenylosuccinate lyase C-terminus AM_RS01385 PF00206 Lyase AM_RS01400 PF01541 GIY-YIG catalytic domain AM_RS01400 PF02151 UvrB/uvrC motif AM_RS01400 PF08459 UvrC Helix-hairpin-helix N-terminal AM_RS01410 PF02237 Biotin protein ligase C terminal domain AM_RS01410 PF03099 Biotin/lipoate A/B protein ligase family AM_RS01425 PF00005 ABC transporter AM_RS01425 PF12857 TOBE-like domain AM_RS01430 PF02416 mttA/Hcf106 family AM_RS01435 PF13662 Toprim domain AM_RS01435 PF02132 RecR protein AM_RS01445 PF01297 Zinc-uptake complex component A periplasmic AM_RS01450 PF00005 ABC transporter AM_RS01455 PF03109 ABC1 family AM_RS01465 PF04055 Radical SAM superfamily AM_RS01465 PF00919 Uncharacterized protein family UPF0004 AM_RS01480 PF16870 2-oxoglutarate dehydrogenase C-terminal AM_RS01480 PF16078 2-oxoglutarate dehydrogenase N-terminus AM_RS01480 PF02779 Transketolase, pyrimidine binding domain AM_RS01480 PF00676 Dehydrogenase E1 component AM_RS01495 PF00701 Dihydrodipicolinate synthetase family AM_RS01500 PF01230 HIT domain AM_RS01510 PF05192 MutS domain III AM_RS01510 PF05190 MutS family domain IV AM_RS01510 PF05188 MutS domain II AM_RS01510 PF00488 MutS domain V AM_RS01510 PF01624 MutS domain I AM_RS01520 PF07690 Major Facilitator Superfamily AM_RS01525 PF07690 Major Facilitator Superfamily AM_RS01525 PF00083 Sugar (and other) transporter AM_RS01530 PF00795 Carbon-nitrogen hydrolase AM_RS01530 PF02540 NAD synthase AM_RS01535 PF00490 Delta-aminolevulinic acid dehydratase AM_RS01540 PF03717 Penicillin-binding Protein dimerisation domain AM_RS01540 PF00905 Penicillin binding protein transpeptidase domain AM_RS01550 PF07690 Major Facilitator Superfamily AM_RS01555 PF00436 Single-strand binding protein family AM_RS01565 PF02637 GatB domain AM_RS01565 PF02934 GatB/GatE catalytic domain AM_RS01580 PF00308 Bacterial dnaA protein AM_RS01580 PF11638 DnaA N-terminal domain AM_RS01580 PF08299 Bacterial dnaA protein helix-turn-helix AM_RS01590 PF01467 Cytidylyltransferase-like AM_RS01595 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AM_RS01605 PF12169 DNA polymerase III subunits gamma and tau domain III AM_RS01605 PF12170 DNA polymerase III tau subunit V interacting with alpha AM_RS01605 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AM_RS01610 PF01300 Telomere recombination AM_RS01615 PF01121 Dephospho-CoA kinase AM_RS01620 PF13667 ThiC-associated domain AM_RS01620 PF01964 Radical SAM ThiC family AM_RS01630 PF01192 RNA polymerase Rpb6 AM_RS01640 PF00133 tRNA synthetases class I (I, L, M and V) AM_RS01640 PF09334 tRNA synthetases class I (M) AM_RS01640 PF08264 Anticodon-binding domain of tRNA AM_RS01640 PF13603 Leucyl-tRNA synthetase, Domain 2 AM_RS01645 PF01026 TatD related DNase AM_RS01650 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM_RS01655 PF03100 CcmE AM_RS01660 PF01975 Survival protein SurE AM_RS01665 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM_RS01670 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM_RS01675 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AM_RS01680 PF17760 UvrA interaction domain AM_RS01680 PF17755 UvrA DNA-binding domain AM_RS01685 PF01029 NusB family AM_RS01690 PF00885 6,7-dimethyl-8-ribityllumazine synthase AM_RS01695 PF14849 YidC periplasmic domain AM_RS01695 PF02096 60Kd inner membrane protein AM_RS01700 PF01066 CDP-alcohol phosphatidyltransferase AM_RS01705 PF02666 Phosphatidylserine decarboxylase AM_RS01710 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM_RS01720 PF04101 Glycosyltransferase family 28 C-terminal domain AM_RS01720 PF03033 Glycosyltransferase family 28 N-terminal domain AM_RS01725 PF08207 Elongation factor P (EF-P) KOW-like domain AM_RS01725 PF01132 Elongation factor P (EF-P) OB domain AM_RS01725 PF09285 Elongation factor P, C-terminal AM_RS01735 PF01479 S4 domain AM_RS01735 PF00849 RNA pseudouridylate synthase AM_RS01740 PF00072 Response regulator receiver domain AM_RS01740 PF00990 Diguanylate cyclase, GGDEF domain AM_RS01750 PF05088 Bacterial NAD-glutamate dehydrogenase AM_RS01755 PF06055 Exopolysaccharide synthesis, ExoD AM_RS01760 PF09190 DALR domain AM_RS01760 PF01406 tRNA synthetases class I (C) catalytic domain AM_RS01765 PF00268 Ribonucleotide reductase, small chain AM_RS01785 PF13662 Toprim domain AM_RS01785 PF08275 DNA primase catalytic core, N-terminal domain AM_RS01785 PF01807 CHC2 zinc finger AM_RS01790 PF04539 Sigma-70 region 3 AM_RS01790 PF04545 Sigma-70, region 4 AM_RS01790 PF04546 Sigma-70, non-essential region AM_RS01790 PF04542 Sigma-70 region 2 AM_RS01790 PF00140 Sigma-70 factor, region 1.2 AM_RS01790 PF03979 Sigma-70 factor, region 1.1 AM_RS01795 PF01207 Dihydrouridine synthase (Dus) AM_RS01800 PF08544 GHMP kinases C terminal AM_RS01800 PF00288 GHMP kinases N terminal domain AM_RS01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM_RS01815 PF13188 PAS domain AM_RS01815 PF00072 Response regulator receiver domain AM_RS01815 PF00512 His Kinase A (phospho-acceptor) domain AM_RS01815 PF08448 PAS fold AM_RS01830 PF01256 Carbohydrate kinase AM_RS01830 PF03853 YjeF-related protein N-terminus AM_RS01835 PF01131 DNA topoisomerase AM_RS01835 PF01751 Toprim domain AM_RS01835 PF01396 Topoisomerase DNA binding C4 zinc finger AM_RS01835 PF13368 Topoisomerase C-terminal repeat AM_RS01850 PF01648 4'-phosphopantetheinyl transferase superfamily AM_RS01855 PF03129 Anticodon binding domain AM_RS01855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM_RS01870 PF01467 Cytidylyltransferase-like AM_RS01875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM_RS01880 PF00578 AhpC/TSA family AM_RS01880 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM_RS01885 PF00155 Aminotransferase class I and II AM_RS01890 PF00155 Aminotransferase class I and II AM_RS01895 PF13145 PPIC-type PPIASE domain AM_RS01930 PF16198 tRNA pseudouridylate synthase B C-terminal domain AM_RS01930 PF01509 TruB family pseudouridylate synthase (N terminal domain) AM_RS01935 PF00312 Ribosomal protein S15 AM_RS01940 PF01138 3' exoribonuclease family, domain 1 AM_RS01940 PF03725 3' exoribonuclease family, domain 2 AM_RS01940 PF00575 S1 RNA binding domain AM_RS01940 PF00013 KH domain AM_RS01940 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AM_RS01950 PF03144 Elongation factor Tu domain 2 AM_RS01950 PF00679 Elongation factor G C-terminus AM_RS01950 PF00009 Elongation factor Tu GTP binding domain AM_RS01950 PF06421 GTP-binding protein LepA C-terminus AM_RS02045 PF00586 AIR synthase related protein, N-terminal domain AM_RS02045 PF02769 AIR synthase related protein, C-terminal domain AM_RS02055 PF00202 Aminotransferase class-III AM_RS02070 PF00398 Ribosomal RNA adenine dimethylase AM_RS02080 PF00121 Triosephosphate isomerase AM_RS02085 PF16868 NMT1-like family AM_RS02090 PF00814 Glycoprotease family AM_RS02100 PF02152 Dihydroneopterin aldolase AM_RS02105 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM_RS02105 PF00056 lactate/malate dehydrogenase, NAD binding domain AM_RS02115 PF00009 Elongation factor Tu GTP binding domain AM_RS02115 PF11987 Translation-initiation factor 2 AM_RS02125 PF02502 Ribose/Galactose Isomerase AM_RS02130 PF08241 Methyltransferase domain AM_RS02135 PF00814 Glycoprotease family AM_RS02175 PF00171 Aldehyde dehydrogenase family AM_RS02175 PF01619 Proline dehydrogenase AM_RS02175 PF14850 DNA-binding domain of Proline dehydrogenase AM_RS02175 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AM_RS02185 PF14850 DNA-binding domain of Proline dehydrogenase AM_RS02185 PF01619 Proline dehydrogenase AM_RS02185 PF00171 Aldehyde dehydrogenase family AM_RS02185 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AM_RS02200 PF03330 Lytic transglycolase AM_RS02205 PF03372 Endonuclease/Exonuclease/phosphatase family AM_RS02215 PF00444 Ribosomal protein L36 AM_RS02235 PF01016 Ribosomal L27 protein AM_RS02240 PF00829 Ribosomal prokaryotic L21 protein AM_RS02245 PF03952 Enolase, N-terminal domain AM_RS02245 PF00113 Enolase, C-terminal TIM barrel domain AM_RS02250 PF01018 GTP1/OBG AM_RS02250 PF01926 50S ribosome-binding GTPase AM_RS02255 PF00709 Adenylosuccinate synthetase AM_RS02265 PF01795 MraW methylase family AM_RS02270 PF01812 5-formyltetrahydrofolate cyclo-ligase family AM_RS02305 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM_RS02310 PF01523 Putative modulator of DNA gyrase AM_RS02315 PF01227 GTP cyclohydrolase I AM_RS02320 PF00231 ATP synthase AM_RS02325 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM_RS02335 PF00929 Exonuclease AM_RS02340 PF13335 Magnesium chelatase, subunit ChlI C-terminal AM_RS02340 PF01078 Magnesium chelatase, subunit ChlI AM_RS02360 PF04542 Sigma-70 region 2 AM_RS02360 PF04545 Sigma-70, region 4 AM_RS02360 PF00140 Sigma-70 factor, region 1.2 AM_RS02380 PF00146 NADH dehydrogenase AM_RS02385 PF00384 Molybdopterin oxidoreductase AM_RS02385 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM_RS02385 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AM_RS02395 PF00204 DNA gyrase B AM_RS02395 PF01751 Toprim domain AM_RS02395 PF00986 DNA gyrase B subunit, carboxyl terminus AM_RS02395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM_RS02400 PF02441 Flavoprotein AM_RS02405 PF03918 Cytochrome C biogenesis protein AM_RS02415 PF00111 2Fe-2S iron-sulfur cluster binding domain AM_RS02420 PF00012 Hsp70 protein AM_RS02425 PF07743 HSCB C-terminal oligomerisation domain AM_RS02425 PF00226 DnaJ domain AM_RS02430 PF01521 Iron-sulphur cluster biosynthesis AM_RS02435 PF01592 NifU-like N terminal domain AM_RS02440 PF00266 Aminotransferase class-V AM_RS02445 PF00266 Aminotransferase class-V AM_RS02450 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AM_RS02455 PF01921 tRNA synthetases class I (K) AM_RS02465 PF01416 tRNA pseudouridine synthase AM_RS02470 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM_RS02470 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM_RS02475 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM_RS02480 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AM_RS02485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM_RS02485 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM_RS02505 PF01728 FtsJ-like methyltransferase AM_RS02550 PF05746 DALR anticodon binding domain AM_RS02550 PF00750 tRNA synthetases class I (R) AM_RS02550 PF03485 Arginyl tRNA synthetase N terminal domain AM_RS02555 PF02565 Recombination protein O C terminal AM_RS02555 PF11967 Recombination protein O N terminal AM_RS02570 PF08264 Anticodon-binding domain of tRNA AM_RS02570 PF00133 tRNA synthetases class I (I, L, M and V) AM_RS02575 PF00578 AhpC/TSA family AM_RS02580 PF04452 RNA methyltransferase AM_RS02595 PF03462 PCRF domain AM_RS02595 PF00472 RF-1 domain AM_RS02600 PF01709 Transcriptional regulator AM_RS02605 PF01425 Amidase AM_RS02610 PF08245 Mur ligase middle domain AM_RS02610 PF02875 Mur ligase family, glutamate ligase domain AM_RS02615 PF03900 Porphobilinogen deaminase, C-terminal domain AM_RS02615 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AM_RS02620 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AM_RS02620 PF01565 FAD binding domain AM_RS02630 PF12838 4Fe-4S dicluster domain AM_RS02635 PF10502 Signal peptidase, peptidase S26 AM_RS02640 PF01521 Iron-sulphur cluster biosynthesis AM_RS02665 PF01617 Surface antigen AM_RS02675 PF00679 Elongation factor G C-terminus AM_RS02675 PF00009 Elongation factor Tu GTP binding domain AM_RS02675 PF03144 Elongation factor Tu domain 2 AM_RS02680 PF02861 Clp amino terminal domain, pathogenicity island component AM_RS02680 PF17871 AAA lid domain AM_RS02680 PF07724 AAA domain (Cdc48 subfamily) AM_RS02680 PF00004 ATPase family associated with various cellular activities (AAA) AM_RS02680 PF10431 C-terminal, D2-small domain, of ClpB protein AM_RS02685 PF03741 Integral membrane protein TerC family AM_RS02690 PF02033 Ribosome-binding factor A AM_RS02695 PF11987 Translation-initiation factor 2 AM_RS02695 PF00009 Elongation factor Tu GTP binding domain AM_RS02700 PF13184 NusA-like KH domain AM_RS02700 PF08529 NusA N-terminal domain AM_RS02700 PF00575 S1 RNA binding domain AM_RS02710 PF00873 AcrB/AcrD/AcrF family AM_RS02715 PF00902 Sec-independent protein translocase protein (TatC) AM_RS02720 PF04551 GcpE protein AM_RS02730 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AM_RS02730 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AM_RS02730 PF13288 DXP reductoisomerase C-terminal domain AM_RS02735 PF00361 Proton-conducting membrane transporter AM_RS02740 PF00361 Proton-conducting membrane transporter AM_RS02745 PF00361 Proton-conducting membrane transporter AM_RS02745 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM_RS02750 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM_RS02755 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AM_RS02760 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM_RS02760 PF10531 SLBB domain AM_RS02760 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM_RS02785 PF02646 RmuC family AM_RS02790 PF02403 Seryl-tRNA synthetase N-terminal domain AM_RS02790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM_RS02800 PF01218 Coproporphyrinogen III oxidase AM_RS02805 PF00696 Amino acid kinase family AM_RS02810 PF01926 50S ribosome-binding GTPase AM_RS02815 PF03462 PCRF domain AM_RS02815 PF00472 RF-1 domain AM_RS02820 PF01039 Carboxyl transferase domain AM_RS02825 PF06827 Zinc finger found in FPG and IleRS AM_RS02825 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM_RS02825 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM_RS02840 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM_RS02865 PF02167 Cytochrome C1 family AM_RS02870 PF00032 Cytochrome b(C-terminal)/b6/petD AM_RS02870 PF00033 Cytochrome b/b6/petB AM_RS02875 PF00355 Rieske [2Fe-2S] domain AM_RS02875 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AM_RS02885 PF00950 ABC 3 transport family AM_RS02895 PF00889 Elongation factor TS AM_RS02900 PF00318 Ribosomal protein S2 AM_RS02905 PF02545 Maf-like protein AM_RS02910 PF01176 Translation initiation factor 1A / IF-1 AM_RS02920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM_RS02920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM_RS02925 PF13360 PQQ-like domain AM_RS02930 PF01926 50S ribosome-binding GTPase AM_RS02930 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AM_RS02935 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AM_RS02935 PF01676 Metalloenzyme superfamily AM_RS02940 PF00117 Glutamine amidotransferase class-I AM_RS02940 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AM_RS02945 PF02401 LytB protein AM_RS02950 PF00692 dUTPase AM_RS02955 PF01225 Mur ligase family, catalytic domain AM_RS02955 PF08245 Mur ligase middle domain AM_RS02955 PF02875 Mur ligase family, glutamate ligase domain AM_RS02970 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AM_RS02975 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AM_RS02985 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AM_RS02995 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM_RS02995 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM_RS03000 PF00528 Binding-protein-dependent transport system inner membrane component AM_RS03010 PF04055 Radical SAM superfamily AM_RS03030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM_RS03030 PF18140 Propionyl-coenzyme A carboxylase BT domain AM_RS03030 PF00289 Biotin carboxylase, N-terminal domain AM_RS03030 PF02785 Biotin carboxylase C-terminal domain AM_RS03030 PF00364 Biotin-requiring enzyme AM_RS03035 PF00849 RNA pseudouridylate synthase AM_RS03040 PF00830 Ribosomal L28 family AM_RS03045 PF00270 DEAD/DEAH box helicase AM_RS03045 PF00271 Helicase conserved C-terminal domain AM_RS03045 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AM_RS03045 PF18074 Primosomal protein N C-terminal domain AM_RS03045 PF17764 3′ DNA-binding domain (3′BD) AM_RS03075 PF01926 50S ribosome-binding GTPase AM_RS03075 PF07650 KH domain AM_RS03080 PF02881 SRP54-type protein, helical bundle domain AM_RS03080 PF02978 Signal peptide binding domain AM_RS03080 PF00448 SRP54-type protein, GTPase domain AM_RS03090 PF03364 Polyketide cyclase / dehydrase and lipid transport AM_RS03095 PF00012 Hsp70 protein AM_RS03100 PF10150 Ribonuclease E/G family AM_RS03100 PF00575 S1 RNA binding domain AM_RS03100 PF12111 Polyribonucleotide phosphorylase C terminal AM_RS03110 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AM_RS03130 PF02780 Transketolase, C-terminal domain AM_RS03130 PF00456 Transketolase, thiamine diphosphate binding domain AM_RS03130 PF02779 Transketolase, pyrimidine binding domain AM_RS03140 PF00691 OmpA family AM_RS03145 PF00709 Adenylosuccinate synthetase AM_RS03150 PF01926 50S ribosome-binding GTPase AM_RS03150 PF01018 GTP1/OBG AM_RS03155 PF03652 Holliday junction resolvase AM_RS03160 PF03477 ATP cone domain AM_RS03160 PF00317 Ribonucleotide reductase, all-alpha domain AM_RS03160 PF02867 Ribonucleotide reductase, barrel domain AM_RS03170 PF00348 Polyprenyl synthetase AM_RS03180 PF01266 FAD dependent oxidoreductase AM_RS03185 PF03796 DnaB-like helicase C terminal domain AM_RS03185 PF00772 DnaB-like helicase N terminal domain AM_RS03195 PF14437 MafB19-like deaminase AM_RS03200 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM_RS03200 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM_RS03205 PF02504 Fatty acid synthesis protein AM_RS03215 PF01702 Queuine tRNA-ribosyltransferase AM_RS03220 PF00005 ABC transporter AM_RS03225 PF01113 Dihydrodipicolinate reductase, N-terminus AM_RS03225 PF05173 Dihydrodipicolinate reductase, C-terminus AM_RS03230 PF01613 Flavin reductase like domain AM_RS03235 PF01040 UbiA prenyltransferase family AM_RS03255 PF00825 Ribonuclease P AM_RS03270 PF03483 B3/4 domain AM_RS03270 PF03484 tRNA synthetase B5 domain AM_RS03270 PF03147 Ferredoxin-fold anticodon binding domain AM_RS03270 PF01588 Putative tRNA binding domain AM_RS03270 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AM_RS03275 PF01196 Ribosomal protein L17 AM_RS03280 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AM_RS03280 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AM_RS03280 PF01000 RNA polymerase Rpb3/RpoA insert domain AM_RS03285 PF00411 Ribosomal protein S11 AM_RS03290 PF00416 Ribosomal protein S13/S18 AM_RS03300 PF00344 SecY translocase AM_RS03305 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AM_RS03310 PF03719 Ribosomal protein S5, C-terminal domain AM_RS03310 PF00333 Ribosomal protein S5, N-terminal domain AM_RS03315 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AM_RS03320 PF00347 Ribosomal protein L6 AM_RS03325 PF00410 Ribosomal protein S8 AM_RS03330 PF00253 Ribosomal protein S14p/S29e AM_RS03335 PF00281 Ribosomal protein L5 AM_RS03335 PF00673 ribosomal L5P family C-terminus AM_RS03340 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AM_RS03340 PF00467 KOW motif AM_RS03345 PF00238 Ribosomal protein L14p/L23e AM_RS03350 PF00366 Ribosomal protein S17 AM_RS03355 PF00831 Ribosomal L29 protein AM_RS03360 PF00252 Ribosomal protein L16p/L10e AM_RS03365 PF07650 KH domain AM_RS03365 PF00189 Ribosomal protein S3, C-terminal domain AM_RS03370 PF00237 Ribosomal protein L22p/L17e AM_RS03375 PF00203 Ribosomal protein S19 AM_RS03380 PF03947 Ribosomal Proteins L2, C-terminal domain AM_RS03380 PF00181 Ribosomal Proteins L2, RNA binding domain AM_RS03385 PF00276 Ribosomal protein L23 AM_RS03390 PF00573 Ribosomal protein L4/L1 family AM_RS03395 PF00297 Ribosomal protein L3 AM_RS03400 PF00338 Ribosomal protein S10p/S20e AM_RS03405 PF03144 Elongation factor Tu domain 2 AM_RS03405 PF03143 Elongation factor Tu C-terminal domain AM_RS03405 PF00009 Elongation factor Tu GTP binding domain AM_RS03420 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM_RS03420 PF00588 SpoU rRNA Methylase family AM_RS03425 PF02224 Cytidylate kinase AM_RS03430 PF00575 S1 RNA binding domain AM_RS03435 PF01343 Peptidase family S49 AM_RS03440 PF00216 Bacterial DNA-binding protein AM_RS03460 PF00762 Ferrochelatase AM_RS03465 PF03969 AFG1-like ATPase AM_RS03485 PF12705 PD-(D/E)XK nuclease superfamily AM_RS03485 PF00580 UvrD/REP helicase N-terminal domain AM_RS03485 PF13361 UvrD-like helicase C-terminal domain AM_RS03490 PF00107 Zinc-binding dehydrogenase AM_RS03495 PF00664 ABC transporter transmembrane region AM_RS03495 PF00005 ABC transporter AM_RS03505 PF00809 Pterin binding enzyme AM_RS03510 PF02142 MGS-like domain AM_RS03510 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM_RS03510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM_RS03520 PF00206 Lyase AM_RS03520 PF10415 Fumarase C C-terminus AM_RS03525 PF02441 Flavoprotein AM_RS03525 PF04127 DNA / pantothenate metabolism flavoprotein AM_RS03530 PF01979 Amidohydrolase family AM_RS03535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM_RS03535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM_RS03535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM_RS03535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM_RS03540 PF03099 Biotin/lipoate A/B protein ligase family AM_RS03545 PF04002 RadC-like JAB domain AM_RS03550 PF00166 Chaperonin 10 Kd subunit AM_RS03555 PF00118 TCP-1/cpn60 chaperonin family AM_RS03565 PF00004 ATPase family associated with various cellular activities (AAA) AM_RS03565 PF17871 AAA lid domain AM_RS03565 PF02861 Clp amino terminal domain, pathogenicity island component AM_RS03565 PF10431 C-terminal, D2-small domain, of ClpB protein AM_RS03565 PF07724 AAA domain (Cdc48 subfamily) AM_RS03580 PF00775 Dioxygenase AM_RS03590 PF02789 Cytosol aminopeptidase family, N-terminal domain AM_RS03590 PF00883 Cytosol aminopeptidase family, catalytic domain AM_RS03595 PF00551 Formyl transferase AM_RS03610 PF13932 GidA associated domain AM_RS03610 PF01134 Glucose inhibited division protein A AM_RS03615 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AM_RS03620 PF01476 LysM domain AM_RS03620 PF01551 Peptidase family M23 AM_RS03635 PF06968 Biotin and Thiamin Synthesis associated domain AM_RS03635 PF04055 Radical SAM superfamily AM_RS03640 PF02769 AIR synthase related protein, C-terminal domain AM_RS03640 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AM_RS03640 PF00586 AIR synthase related protein, N-terminal domain AM_RS03645 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AM_RS03645 PF00809 Pterin binding enzyme AM_RS03660 PF01435 Peptidase family M48 AM_RS03680 PF00586 AIR synthase related protein, N-terminal domain AM_RS03680 PF02769 AIR synthase related protein, C-terminal domain AM_RS03685 PF00589 Phage integrase family AM_RS03685 PF02899 Phage integrase, N-terminal SAM-like domain AM_RS03690 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AM_RS03690 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AM_RS03705 PF01617 Surface antigen AM_RS03710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM_RS03710 PF07497 Rho termination factor, RNA-binding domain AM_RS03710 PF07498 Rho termination factor, N-terminal domain AM_RS03720 PF00227 Proteasome subunit AM_RS03725 PF07724 AAA domain (Cdc48 subfamily) AM_RS03725 PF10431 C-terminal, D2-small domain, of ClpB protein AM_RS03725 PF00004 ATPase family associated with various cellular activities (AAA) AM_RS03730 PF01209 ubiE/COQ5 methyltransferase family AM_RS03735 PF08264 Anticodon-binding domain of tRNA AM_RS03735 PF09334 tRNA synthetases class I (M) AM_RS03740 PF13840 ACT domain AM_RS03740 PF00696 Amino acid kinase family AM_RS03750 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AM_RS03750 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AM_RS03755 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM_RS03760 PF01040 UbiA prenyltransferase family AM_RS03765 PF13525 Outer membrane lipoprotein AM_RS03770 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AM_RS03770 PF02844 Phosphoribosylglycinamide synthetase, N domain AM_RS03770 PF02843 Phosphoribosylglycinamide synthetase, C domain AM_RS03775 PF02699 Preprotein translocase subunit AM_RS03780 PF01380 SIS domain AM_RS03785 PF02768 DNA polymerase III beta subunit, C-terminal domain AM_RS03785 PF02767 DNA polymerase III beta subunit, central domain AM_RS03785 PF00712 DNA polymerase III beta subunit, N-terminal domain AM_RS03795 PF00072 Response regulator receiver domain AM_RS03795 PF00486 Transcriptional regulatory protein, C terminal AM_RS03815 PF00719 Inorganic pyrophosphatase AM_RS03820 PF00380 Ribosomal protein S9/S16 AM_RS03825 PF00572 Ribosomal protein L13 AM_RS03830 PF02321 Outer membrane efflux protein AM_RS03840 PF10609 NUBPL iron-transfer P-loop NTPase AM_RS03850 PF02686 Glu-tRNAGln amidotransferase C subunit AM_RS03855 PF00330 Aconitase family (aconitate hydratase) AM_RS03855 PF00694 Aconitase C-terminal domain AM_RS03860 PF04379 ApaG domain AM_RS03865 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AM_RS03865 PF02222 ATP-grasp domain AM_RS03935 PF12221 Bacterial membrane protein N terminal AM_RS03935 PF01145 SPFH domain / Band 7 family AM_RS03940 PF01145 SPFH domain / Band 7 family AM_RS03945 PF13180 PDZ domain AM_RS03955 PF00035 Double-stranded RNA binding motif AM_RS03955 PF14622 Ribonuclease-III-like AM_RS03960 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AM_RS03990 PF05193 Peptidase M16 inactive domain AM_RS03990 PF00675 Insulinase (Peptidase family M16) AM_RS03995 PF01252 Signal peptidase (SPase) II AM_RS04000 PF01687 Riboflavin kinase AM_RS04000 PF06574 FAD synthetase AM_RS04005 PF00462 Glutaredoxin AM_RS04010 PF17827 PrmC N-terminal domain AM_RS04010 PF05175 Methyltransferase small domain AM_RS04015 PF00557 Metallopeptidase family M24 AM_RS04020 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM_RS04020 PF00364 Biotin-requiring enzyme AM_RS04020 PF02817 e3 binding domain AM_RS04030 PF02569 Pantoate-beta-alanine ligase AM_RS04035 PF00768 D-alanyl-D-alanine carboxypeptidase AM_RS04035 PF07943 Penicillin-binding protein 5, C-terminal domain AM_RS04050 PF02163 Peptidase family M50 AM_RS04050 PF17820 PDZ domain AM_RS04055 PF01103 Surface antigen AM_RS04055 PF07244 Surface antigen variable number repeat AM_RS04065 PF07977 FabA-like domain AM_RS04070 PF01808 AICARFT/IMPCHase bienzyme AM_RS04070 PF02142 MGS-like domain AM_RS04075 PF01066 CDP-alcohol phosphatidyltransferase AM_RS04080 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM_RS04085 PF01464 Transglycosylase SLT domain AM_RS04090 PF02104 SURF1 family AM_RS04100 PF13685 Iron-containing alcohol dehydrogenase AM_RS04105 PF00119 ATP synthase A chain AM_RS04115 PF00137 ATP synthase subunit C AM_RS04130 PF02491 SHS2 domain inserted in FTSA AM_RS04135 PF02386 Cation transport protein AM_RS04150 PF00004 ATPase family associated with various cellular activities (AAA) AM_RS04150 PF06480 FtsH Extracellular AM_RS04150 PF01434 Peptidase family M41 AM_RS04150 PF17862 AAA+ lid domain AM_RS04155 PF07516 SecA Wing and Scaffold domain AM_RS04155 PF07517 SecA DEAD-like domain AM_RS04155 PF02810 SEC-C motif AM_RS04155 PF01043 SecA preprotein cross-linking domain AM_RS04165 PF01545 Cation efflux family AM_RS04180 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM_RS04190 PF02881 SRP54-type protein, helical bundle domain AM_RS04190 PF00448 SRP54-type protein, GTPase domain AM_RS04195 PF00180 Isocitrate/isopropylmalate dehydrogenase AM_RS04195 PF18324 Hypothetical protein TT1725 AM_RS04200 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AM_RS04200 PF17768 RecJ OB domain AM_RS04200 PF02272 DHHA1 domain AM_RS04200 PF01368 DHH family AM_RS04210 PF13735 tRNA nucleotidyltransferase domain 2 putative AM_RS04210 PF12627 Probable RNA and SrmB- binding site of polymerase A AM_RS04210 PF01743 Poly A polymerase head domain AM_RS04215 PF00334 Nucleoside diphosphate kinase AM_RS04220 PF01381 Helix-turn-helix AM_RS04245 PF01617 Surface antigen AM_RS04330 PF01578 Cytochrome C assembly protein AM_RS04330 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AM_RS04335 PF00133 tRNA synthetases class I (I, L, M and V) AM_RS04335 PF08264 Anticodon-binding domain of tRNA AM_RS04340 PF01668 SmpB protein AM_RS04345 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM_RS04345 PF00925 GTP cyclohydrolase II AM_RS04350 PF01272 Transcription elongation factor, GreA/GreB, C-term AM_RS04350 PF03449 Transcription elongation factor, N-terminal AM_RS04355 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM_RS04355 PF00306 ATP synthase alpha/beta chain, C terminal domain AM_RS04355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM_RS04360 PF00213 ATP synthase delta (OSCP) subunit AM_RS04385 PF12704 MacB-like periplasmic core domain AM_RS04385 PF02687 FtsX-like permease family AM_RS04400 PF00285 Citrate synthase, C-terminal domain AM_RS04405 PF00958 GMP synthase C terminal domain AM_RS04405 PF00117 Glutamine amidotransferase class-I AM_RS04415 PF02817 e3 binding domain AM_RS04415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM_RS04415 PF00364 Biotin-requiring enzyme AM_RS04420 PF01791 DeoC/LacD family aldolase AM_RS04430 PF00905 Penicillin binding protein transpeptidase domain AM_RS04430 PF03717 Penicillin-binding Protein dimerisation domain AM_RS04435 PF02355 Protein export membrane protein AM_RS04435 PF07549 SecD/SecF GG Motif AM_RS04440 PF02021 Uncharacterised protein family UPF0102 AM_RS04445 PF00155 Aminotransferase class I and II AM_RS04450 PF00579 tRNA synthetases class I (W and Y) AM_RS04460 PF03951 Glutamine synthetase, beta-Grasp domain AM_RS04460 PF00120 Glutamine synthetase, catalytic domain AM_RS04465 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AM_RS04465 PF00953 Glycosyl transferase family 4 AM_RS04470 PF00348 Polyprenyl synthetase AM_RS04480 PF00005 ABC transporter AM_RS04485 PF02405 Permease MlaE AM_RS04490 PF00834 Ribulose-phosphate 3 epimerase family AM_RS04495 PF01367 5'-3' exonuclease, C-terminal SAM fold AM_RS04495 PF00476 DNA polymerase family A AM_RS04495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM_RS04510 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM_RS04510 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM_RS04515 PF02463 RecF/RecN/SMC N terminal domain AM_RS04565 PF01790 Prolipoprotein diacylglyceryl transferase AM_RS04575 PF01649 Ribosomal protein S20 AM_RS04585 PF01327 Polypeptide deformylase AM_RS04590 PF03167 Uracil DNA glycosylase superfamily AM_RS04620 PF04851 Type III restriction enzyme, res subunit AM_RS04620 PF12344 Ultra-violet resistance protein B AM_RS04620 PF00271 Helicase conserved C-terminal domain AM_RS04620 PF02151 UvrB/uvrC motif AM_RS04620 PF17757 UvrB interaction domain AM_RS04625 PF02355 Protein export membrane protein AM_RS04635 PF01617 Surface antigen AM_RS04645 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AM_RS04665 PF12327 FtsZ family, C-terminal domain AM_RS04665 PF00091 Tubulin/FtsZ family, GTPase domain AM_RS04675 PF02130 Uncharacterized protein family UPF0054 AM_RS04680 PF13614 AAA domain AM_RS04685 PF17762 HTH domain found in ParB protein AM_RS04685 PF02195 ParB-like nuclease domain AM_RS04690 PF01782 RimM N-terminal domain AM_RS04690 PF05239 PRC-barrel domain AM_RS04695 PF01746 tRNA (Guanine-1)-methyltransferase AM_RS04700 PF01245 Ribosomal protein L19 AM_RS04705 PF02464 Competence-damaged protein AM_RS04705 PF18146 Damage-inducible protein CinA KH domain AM_RS04705 PF00994 Probable molybdopterin binding domain AM_RS04710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM_RS04710 PF03129 Anticodon binding domain AM_RS04710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM_RS04715 PF00707 Translation initiation factor IF-3, C-terminal domain AM_RS04715 PF05198 Translation initiation factor IF-3, N-terminal domain AM_RS04720 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AM_RS04725 PF01027 Inhibitor of apoptosis-promoting Bax1 AM_RS04730 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM_RS04730 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM_RS04735 PF02575 YbaB/EbfC DNA-binding family AM_RS04740 PF12169 DNA polymerase III subunits gamma and tau domain III AM_RS04740 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AM_RS04740 PF12170 DNA polymerase III tau subunit V interacting with alpha AM_RS04745 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM_RS04745 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM_RS04765 PF01098 Cell cycle protein AM_RS04770 PF02773 S-adenosylmethionine synthetase, C-terminal domain AM_RS04770 PF00438 S-adenosylmethionine synthetase, N-terminal domain AM_RS04770 PF02772 S-adenosylmethionine synthetase, central domain AM_RS04780 PF01494 FAD binding domain AM_RS04795 PF02091 Glycyl-tRNA synthetase alpha subunit AM_RS04800 PF02092 Glycyl-tRNA synthetase beta subunit AM_RS04800 PF05746 DALR anticodon binding domain AM_RS04805 PF00684 DnaJ central domain AM_RS04805 PF01556 DnaJ C terminal domain AM_RS04805 PF00226 DnaJ domain AM_RS04810 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AM_RS04810 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AM_RS04815 PF02660 Glycerol-3-phosphate acyltransferase AM_RS04820 PF02075 Crossover junction endodeoxyribonuclease RuvC AM_RS04825 PF00510 Cytochrome c oxidase subunit III AM_RS04835 PF00571 CBS domain AM_RS04835 PF03471 Transporter associated domain AM_RS04845 PF04860 Phage portal protein AM_RS04855 PF02445 Quinolinate synthetase A protein AM_RS04860 PF00037 4Fe-4S binding domain AM_RS04860 PF11953 Domain of unknown function (DUF3470) AM_RS04865 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AM_RS04865 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AM_RS04870 PF00707 Translation initiation factor IF-3, C-terminal domain AM_RS04870 PF05198 Translation initiation factor IF-3, N-terminal domain AM_RS04875 PF02534 Type IV secretory system Conjugative DNA transfer AM_RS04880 PF00437 Type II/IV secretion system protein AM_RS04885 PF03743 Bacterial conjugation TrbI-like protein AM_RS04900 PF00925 GTP cyclohydrolase II AM_RS04910 PF01209 ubiE/COQ5 methyltransferase family AM_RS04920 PF01678 Diaminopimelate epimerase AM_RS04935 PF00162 Phosphoglycerate kinase AM_RS04940 PF13742 OB-fold nucleic acid binding domain AM_RS04940 PF02601 Exonuclease VII, large subunit AM_RS04950 PF00132 Bacterial transferase hexapeptide (six repeats) AM_RS04950 PF14602 Hexapeptide repeat of succinyl-transferase AM_RS04950 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AM_RS04955 PF10396 GTP-binding protein TrmE N-terminus AM_RS04955 PF12631 MnmE helical domain AM_RS04955 PF01926 50S ribosome-binding GTPase AM_RS04960 PF04127 DNA / pantothenate metabolism flavoprotein AM_RS04960 PF02441 Flavoprotein AM_RS04965 PF17191 RecG wedge domain AM_RS04965 PF00270 DEAD/DEAH box helicase AM_RS04965 PF00271 Helicase conserved C-terminal domain AM_RS04970 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AM_RS04975 PF13537 Glutamine amidotransferase domain AM_RS04975 PF00156 Phosphoribosyl transferase domain AM_RS04980 PF01195 Peptidyl-tRNA hydrolase AM_RS04985 PF14693 Ribosomal protein TL5, C-terminal domain AM_RS04985 PF01386 Ribosomal L25p family AM_RS05010 PF00156 Phosphoribosyl transferase domain AM_RS05015 PF07687 Peptidase dimerisation domain AM_RS05015 PF01546 Peptidase family M20/M25/M40 AM_RS05020 PF02254 TrkA-N domain AM_RS05020 PF00999 Sodium/hydrogen exchanger family AM_RS05030 PF03653 Uncharacterised protein family (UPF0093) AM_RS05035 PF02779 Transketolase, pyrimidine binding domain AM_RS05035 PF00364 Biotin-requiring enzyme AM_RS05035 PF02780 Transketolase, C-terminal domain AM_RS05050 PF01523 Putative modulator of DNA gyrase AM_RS05060 PF01926 50S ribosome-binding GTPase AM_RS05060 PF06071 Protein of unknown function (DUF933) AM_RS05065 PF02542 YgbB family AM_RS05070 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AM_RS05070 PF02542 YgbB family