locus-tag class description APH_RS00005 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APH_RS00005 PF00476 DNA polymerase family A APH_RS00005 PF01367 5'-3' exonuclease, C-terminal SAM fold APH_RS00010 PF00834 Ribulose-phosphate 3 epimerase family APH_RS00015 PF02405 Permease MlaE APH_RS00020 PF00005 ABC transporter APH_RS00040 PF02773 S-adenosylmethionine synthetase, C-terminal domain APH_RS00040 PF02772 S-adenosylmethionine synthetase, central domain APH_RS00040 PF00438 S-adenosylmethionine synthetase, N-terminal domain APH_RS00050 PF01494 FAD binding domain APH_RS00065 PF02091 Glycyl-tRNA synthetase alpha subunit APH_RS00070 PF05746 DALR anticodon binding domain APH_RS00070 PF02092 Glycyl-tRNA synthetase beta subunit APH_RS00075 PF01556 DnaJ C terminal domain APH_RS00075 PF00226 DnaJ domain APH_RS00075 PF00684 DnaJ central domain APH_RS00080 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APH_RS00080 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APH_RS00085 PF02660 Glycerol-3-phosphate acyltransferase APH_RS00090 PF02075 Crossover junction endodeoxyribonuclease RuvC APH_RS00095 PF00510 Cytochrome c oxidase subunit III APH_RS00100 PF01208 Uroporphyrinogen decarboxylase (URO-D) APH_RS00105 PF00571 CBS domain APH_RS00105 PF03471 Transporter associated domain APH_RS00115 PF04860 Phage portal protein APH_RS00120 PF13847 Methyltransferase domain APH_RS00125 PF02445 Quinolinate synthetase A protein APH_RS00130 PF00037 4Fe-4S binding domain APH_RS00130 PF11953 Domain of unknown function (DUF3470) APH_RS00160 PF00579 tRNA synthetases class I (W and Y) APH_RS00165 PF01025 GrpE APH_RS00170 PF01872 RibD C-terminal domain APH_RS00170 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APH_RS00175 PF00117 Glutamine amidotransferase class-I APH_RS00175 PF06418 CTP synthase N-terminus APH_RS00185 PF00589 Phage integrase family APH_RS00185 PF02899 Phage integrase, N-terminal SAM-like domain APH_RS00190 PF00005 ABC transporter APH_RS00195 PF00390 Malic enzyme, N-terminal domain APH_RS00195 PF01515 Phosphate acetyl/butaryl transferase APH_RS00195 PF03949 Malic enzyme, NAD binding domain APH_RS00205 PF00361 Proton-conducting membrane transporter APH_RS00215 PF02470 MlaD protein APH_RS00225 PF03477 ATP cone domain APH_RS00245 PF13416 Bacterial extracellular solute-binding protein APH_RS00250 PF03966 Trm112p-like protein APH_RS00255 PF08946 Osmosensory transporter coiled coil APH_RS00255 PF00083 Sugar (and other) transporter APH_RS00260 PF00886 Ribosomal protein S16 APH_RS00270 PF02772 S-adenosylmethionine synthetase, central domain APH_RS00270 PF02773 S-adenosylmethionine synthetase, C-terminal domain APH_RS00270 PF00438 S-adenosylmethionine synthetase, N-terminal domain APH_RS00280 PF01409 tRNA synthetases class II core domain (F) APH_RS00280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APH_RS00285 PF00453 Ribosomal protein L20 APH_RS00290 PF01632 Ribosomal protein L35 APH_RS00300 PF07498 Rho termination factor, N-terminal domain APH_RS00300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_RS00300 PF07497 Rho termination factor, RNA-binding domain APH_RS00305 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_RS00305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APH_RS00310 PF00684 DnaJ central domain APH_RS00310 PF01556 DnaJ C terminal domain APH_RS00310 PF00226 DnaJ domain APH_RS00315 PF01106 NifU-like domain APH_RS00330 PF05690 Thiazole biosynthesis protein ThiG APH_RS00340 PF00749 tRNA synthetases class I (E and Q), catalytic domain APH_RS00375 PF02609 Exonuclease VII small subunit APH_RS00380 PF00085 Thioredoxin APH_RS00390 PF00676 Dehydrogenase E1 component APH_RS00395 PF12146 Serine aminopeptidase, S33 APH_RS00410 PF00551 Formyl transferase APH_RS00415 PF00571 CBS domain APH_RS00415 PF00478 IMP dehydrogenase / GMP reductase domain APH_RS00420 PF01513 ATP-NAD kinase APH_RS00430 PF04860 Phage portal protein APH_RS00435 PF00698 Acyl transferase domain APH_RS00440 PF02223 Thymidylate kinase APH_RS00460 PF02556 Preprotein translocase subunit SecB APH_RS00465 PF13462 Thioredoxin APH_RS00475 PF00675 Insulinase (Peptidase family M16) APH_RS00475 PF05193 Peptidase M16 inactive domain APH_RS00490 PF00696 Amino acid kinase family APH_RS00500 PF00677 Lumazine binding domain APH_RS00505 PF02559 CarD-like/TRCF domain APH_RS00505 PF00270 DEAD/DEAH box helicase APH_RS00505 PF00271 Helicase conserved C-terminal domain APH_RS00505 PF03461 TRCF domain APH_RS00505 PF17757 UvrB interaction domain APH_RS00510 PF00075 RNase H APH_RS00520 PF00696 Amino acid kinase family APH_RS00525 PF01765 Ribosome recycling factor APH_RS00550 PF01259 SAICAR synthetase APH_RS00555 PF03129 Anticodon binding domain APH_RS00555 PF13393 Histidyl-tRNA synthetase APH_RS00565 PF02628 Cytochrome oxidase assembly protein APH_RS00570 PF00005 ABC transporter APH_RS00575 PF00091 Tubulin/FtsZ family, GTPase domain APH_RS00575 PF12327 FtsZ family, C-terminal domain APH_RS00605 PF00313 'Cold-shock' DNA-binding domain APH_RS00610 PF00512 His Kinase A (phospho-acceptor) domain APH_RS00610 PF00989 PAS fold APH_RS00610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_RS00610 PF00672 HAMP domain APH_RS00615 PF00570 HRDC domain APH_RS00615 PF01612 3'-5' exonuclease APH_RS00620 PF00533 BRCA1 C Terminus (BRCT) domain APH_RS00620 PF01653 NAD-dependent DNA ligase adenylation domain APH_RS00620 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APH_RS00620 PF12826 Helix-hairpin-helix motif APH_RS00620 PF03120 NAD-dependent DNA ligase OB-fold domain APH_RS00625 PF00462 Glutaredoxin APH_RS00635 PF08534 Redoxin APH_RS00660 PF00625 Guanylate kinase APH_RS00675 PF01250 Ribosomal protein S6 APH_RS00680 PF01084 Ribosomal protein S18 APH_RS00685 PF01281 Ribosomal protein L9, N-terminal domain APH_RS00685 PF03948 Ribosomal protein L9, C-terminal domain APH_RS00690 PF00464 Serine hydroxymethyltransferase APH_RS00700 PF00664 ABC transporter transmembrane region APH_RS00700 PF00005 ABC transporter APH_RS00705 PF00890 FAD binding domain APH_RS00705 PF02910 Fumarate reductase flavoprotein C-term APH_RS00710 PF13085 2Fe-2S iron-sulfur cluster binding domain APH_RS00710 PF13237 4Fe-4S dicluster domain APH_RS00715 PF00890 FAD binding domain APH_RS00715 PF02910 Fumarate reductase flavoprotein C-term APH_RS00720 PF13237 4Fe-4S dicluster domain APH_RS00720 PF13085 2Fe-2S iron-sulfur cluster binding domain APH_RS00725 PF02511 Thymidylate synthase complementing protein APH_RS00730 PF07690 Major Facilitator Superfamily APH_RS00740 PF02091 Glycyl-tRNA synthetase alpha subunit APH_RS00745 PF05491 RuvB C-terminal winged helix domain APH_RS00745 PF17864 RuvB AAA lid domain APH_RS00745 PF05496 Holliday junction DNA helicase RuvB P-loop domain APH_RS00750 PF07499 RuvA, C-terminal domain APH_RS00750 PF01330 RuvA N terminal domain APH_RS00755 PF01578 Cytochrome C assembly protein APH_RS00760 PF00625 Guanylate kinase APH_RS00775 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APH_RS00775 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APH_RS00800 PF00034 Cytochrome c APH_RS00805 PF00361 Proton-conducting membrane transporter APH_RS00815 PF02896 PEP-utilising enzyme, TIM barrel domain APH_RS00815 PF00391 PEP-utilising enzyme, mobile domain APH_RS00815 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APH_RS00825 PF13419 Haloacid dehalogenase-like hydrolase APH_RS00840 PF00152 tRNA synthetases class II (D, K and N) APH_RS00840 PF01336 OB-fold nucleic acid binding domain APH_RS00840 PF02938 GAD domain APH_RS00845 PF04972 BON domain APH_RS00850 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APH_RS00850 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APH_RS00855 PF08478 POTRA domain, FtsQ-type APH_RS00855 PF03799 Cell division protein FtsQ APH_RS00860 PF00158 Sigma-54 interaction domain APH_RS00860 PF00072 Response regulator receiver domain APH_RS00860 PF02954 Bacterial regulatory protein, Fis family APH_RS00865 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APH_RS00865 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APH_RS00870 PF02899 Phage integrase, N-terminal SAM-like domain APH_RS00870 PF00589 Phage integrase family APH_RS00880 PF02769 AIR synthase related protein, C-terminal domain APH_RS00880 PF00586 AIR synthase related protein, N-terminal domain APH_RS00895 PF02769 AIR synthase related protein, C-terminal domain APH_RS00895 PF00586 AIR synthase related protein, N-terminal domain APH_RS00920 PF02769 AIR synthase related protein, C-terminal domain APH_RS00920 PF00586 AIR synthase related protein, N-terminal domain APH_RS00930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APH_RS00935 PF00586 AIR synthase related protein, N-terminal domain APH_RS00935 PF02769 AIR synthase related protein, C-terminal domain APH_RS00935 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APH_RS00955 PF04055 Radical SAM superfamily APH_RS00955 PF06968 Biotin and Thiamin Synthesis associated domain APH_RS00970 PF01476 LysM domain APH_RS00970 PF01551 Peptidase family M23 APH_RS00975 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APH_RS00980 PF13932 GidA associated domain APH_RS00980 PF01134 Glucose inhibited division protein A APH_RS00985 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal APH_RS00985 PF02769 AIR synthase related protein, C-terminal domain APH_RS00985 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APH_RS01010 PF00551 Formyl transferase APH_RS01015 PF02789 Cytosol aminopeptidase family, N-terminal domain APH_RS01015 PF00883 Cytosol aminopeptidase family, catalytic domain APH_RS01020 PF00775 Dioxygenase APH_RS01035 PF10431 C-terminal, D2-small domain, of ClpB protein APH_RS01035 PF02861 Clp amino terminal domain, pathogenicity island component APH_RS01035 PF17871 AAA lid domain APH_RS01035 PF07724 AAA domain (Cdc48 subfamily) APH_RS01035 PF00004 ATPase family associated with various cellular activities (AAA) APH_RS01055 PF00118 TCP-1/cpn60 chaperonin family APH_RS01060 PF00166 Chaperonin 10 Kd subunit APH_RS01065 PF04002 RadC-like JAB domain APH_RS01070 PF03099 Biotin/lipoate A/B protein ligase family APH_RS01075 PF01979 Amidohydrolase family APH_RS01080 PF02441 Flavoprotein APH_RS01080 PF04127 DNA / pantothenate metabolism flavoprotein APH_RS01085 PF00206 Lyase APH_RS01085 PF10415 Fumarase C C-terminus APH_RS01095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APH_RS01095 PF02142 MGS-like domain APH_RS01095 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APH_RS01100 PF00809 Pterin binding enzyme APH_RS01105 PF00005 ABC transporter APH_RS01105 PF00664 ABC transporter transmembrane region APH_RS01110 PF08240 Alcohol dehydrogenase GroES-like domain APH_RS01110 PF00107 Zinc-binding dehydrogenase APH_RS01115 PF13361 UvrD-like helicase C-terminal domain APH_RS01115 PF12705 PD-(D/E)XK nuclease superfamily APH_RS01115 PF00580 UvrD/REP helicase N-terminal domain APH_RS01140 PF00762 Ferrochelatase APH_RS01165 PF02779 Transketolase, pyrimidine binding domain APH_RS01165 PF00456 Transketolase, thiamine diphosphate binding domain APH_RS01165 PF02780 Transketolase, C-terminal domain APH_RS01175 PF00216 Bacterial DNA-binding protein APH_RS01180 PF01343 Peptidase family S49 APH_RS01185 PF00575 S1 RNA binding domain APH_RS01190 PF02224 Cytidylate kinase APH_RS01195 PF08032 RNA 2'-O ribose methyltransferase substrate binding APH_RS01195 PF00588 SpoU rRNA Methylase family APH_RS01210 PF03143 Elongation factor Tu C-terminal domain APH_RS01210 PF03144 Elongation factor Tu domain 2 APH_RS01210 PF00009 Elongation factor Tu GTP binding domain APH_RS01215 PF00338 Ribosomal protein S10p/S20e APH_RS01220 PF00297 Ribosomal protein L3 APH_RS01225 PF00573 Ribosomal protein L4/L1 family APH_RS01230 PF00276 Ribosomal protein L23 APH_RS01235 PF00181 Ribosomal Proteins L2, RNA binding domain APH_RS01235 PF03947 Ribosomal Proteins L2, C-terminal domain APH_RS01240 PF00203 Ribosomal protein S19 APH_RS01245 PF00237 Ribosomal protein L22p/L17e APH_RS01250 PF07650 KH domain APH_RS01250 PF00189 Ribosomal protein S3, C-terminal domain APH_RS01255 PF00252 Ribosomal protein L16p/L10e APH_RS01260 PF00831 Ribosomal L29 protein APH_RS01265 PF00366 Ribosomal protein S17 APH_RS01270 PF00238 Ribosomal protein L14p/L23e APH_RS01275 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APH_RS01275 PF00467 KOW motif APH_RS01280 PF00281 Ribosomal protein L5 APH_RS01280 PF00673 ribosomal L5P family C-terminus APH_RS01285 PF00253 Ribosomal protein S14p/S29e APH_RS01290 PF00410 Ribosomal protein S8 APH_RS01295 PF00347 Ribosomal protein L6 APH_RS01300 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APH_RS01305 PF00333 Ribosomal protein S5, N-terminal domain APH_RS01305 PF03719 Ribosomal protein S5, C-terminal domain APH_RS01310 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APH_RS01315 PF00344 SecY translocase APH_RS01320 PF05191 Adenylate kinase, active site lid APH_RS01325 PF00416 Ribosomal protein S13/S18 APH_RS01330 PF00411 Ribosomal protein S11 APH_RS01335 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APH_RS01335 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APH_RS01335 PF01000 RNA polymerase Rpb3/RpoA insert domain APH_RS01340 PF01196 Ribosomal protein L17 APH_RS01345 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APH_RS01345 PF03147 Ferredoxin-fold anticodon binding domain APH_RS01345 PF01588 Putative tRNA binding domain APH_RS01345 PF03484 tRNA synthetase B5 domain APH_RS01345 PF03483 B3/4 domain APH_RS01350 PF00753 Metallo-beta-lactamase superfamily APH_RS01350 PF13567 Domain of unknown function (DUF4131) APH_RS01350 PF03772 Competence protein APH_RS01360 PF00825 Ribonuclease P APH_RS01365 PF01040 UbiA prenyltransferase family APH_RS01370 PF01613 Flavin reductase like domain APH_RS01375 PF00005 ABC transporter APH_RS01380 PF01702 Queuine tRNA-ribosyltransferase APH_RS01385 PF01783 Ribosomal L32p protein family APH_RS01390 PF02504 Fatty acid synthesis protein APH_RS01395 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APH_RS01395 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APH_RS01405 PF14437 MafB19-like deaminase APH_RS01415 PF03796 DnaB-like helicase C terminal domain APH_RS01415 PF00772 DnaB-like helicase N terminal domain APH_RS01420 PF01266 FAD dependent oxidoreductase APH_RS01425 PF02779 Transketolase, pyrimidine binding domain APH_RS01425 PF02780 Transketolase, C-terminal domain APH_RS01425 PF00456 Transketolase, thiamine diphosphate binding domain APH_RS01440 PF00348 Polyprenyl synthetase APH_RS01450 PF03477 ATP cone domain APH_RS01450 PF02867 Ribonucleotide reductase, barrel domain APH_RS01450 PF00317 Ribonucleotide reductase, all-alpha domain APH_RS01455 PF03652 Holliday junction resolvase APH_RS01460 PF00709 Adenylosuccinate synthetase APH_RS01465 PF17764 3′ DNA-binding domain (3′BD) APH_RS01465 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APH_RS01465 PF00270 DEAD/DEAH box helicase APH_RS01465 PF18074 Primosomal protein N C-terminal domain APH_RS01465 PF00271 Helicase conserved C-terminal domain APH_RS01470 PF00691 OmpA family APH_RS01480 PF02780 Transketolase, C-terminal domain APH_RS01480 PF02779 Transketolase, pyrimidine binding domain APH_RS01480 PF00456 Transketolase, thiamine diphosphate binding domain APH_RS01490 PF03334 Na+/H+ antiporter subunit APH_RS01500 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter APH_RS01510 PF00575 S1 RNA binding domain APH_RS01510 PF12111 Polyribonucleotide phosphorylase C terminal APH_RS01510 PF10150 Ribonuclease E/G family APH_RS01515 PF00012 Hsp70 protein APH_RS01525 PF00361 Proton-conducting membrane transporter APH_RS01530 PF00448 SRP54-type protein, GTPase domain APH_RS01530 PF02881 SRP54-type protein, helical bundle domain APH_RS01530 PF02978 Signal peptide binding domain APH_RS01535 PF07650 KH domain APH_RS01535 PF01926 50S ribosome-binding GTPase APH_RS01570 PF17764 3′ DNA-binding domain (3′BD) APH_RS01570 PF00270 DEAD/DEAH box helicase APH_RS01570 PF18074 Primosomal protein N C-terminal domain APH_RS01570 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APH_RS01570 PF00271 Helicase conserved C-terminal domain APH_RS01575 PF00830 Ribosomal L28 family APH_RS01580 PF00849 RNA pseudouridylate synthase APH_RS01590 PF18140 Propionyl-coenzyme A carboxylase BT domain APH_RS01590 PF00364 Biotin-requiring enzyme APH_RS01590 PF00289 Biotin carboxylase, N-terminal domain APH_RS01590 PF02785 Biotin carboxylase C-terminal domain APH_RS01590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APH_RS01605 PF04055 Radical SAM superfamily APH_RS01615 PF00528 Binding-protein-dependent transport system inner membrane component APH_RS01620 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APH_RS01620 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APH_RS01630 PF03135 CagE, TrbE, VirB family, component of type IV transporter system APH_RS01640 PF04610 TrbL/VirB6 plasmid conjugal transfer protein APH_RS01660 PF00692 dUTPase APH_RS01665 PF02401 LytB protein APH_RS01675 PF00117 Glutamine amidotransferase class-I APH_RS01675 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APH_RS01715 PF01676 Metalloenzyme superfamily APH_RS01715 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APH_RS01720 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APH_RS01720 PF01926 50S ribosome-binding GTPase APH_RS01730 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_RS01730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APH_RS01740 PF01176 Translation initiation factor 1A / IF-1 APH_RS01745 PF02545 Maf-like protein APH_RS01750 PF00318 Ribosomal protein S2 APH_RS01755 PF00889 Elongation factor TS APH_RS01760 PF00950 ABC 3 transport family APH_RS01770 PF00355 Rieske [2Fe-2S] domain APH_RS01770 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APH_RS01775 PF00032 Cytochrome b(C-terminal)/b6/petD APH_RS01775 PF00033 Cytochrome b/b6/petB APH_RS01780 PF02167 Cytochrome C1 family APH_RS01815 PF00749 tRNA synthetases class I (E and Q), catalytic domain APH_RS01825 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APH_RS01825 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APH_RS01825 PF06827 Zinc finger found in FPG and IleRS APH_RS01830 PF01134 Glucose inhibited division protein A APH_RS01830 PF13932 GidA associated domain APH_RS01840 PF01039 Carboxyl transferase domain APH_RS01845 PF03135 CagE, TrbE, VirB family, component of type IV transporter system APH_RS01850 PF00472 RF-1 domain APH_RS01850 PF03462 PCRF domain APH_RS01860 PF01926 50S ribosome-binding GTPase APH_RS01865 PF00696 Amino acid kinase family APH_RS01870 PF01218 Coproporphyrinogen III oxidase APH_RS01885 PF02403 Seryl-tRNA synthetase N-terminal domain APH_RS01885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APH_RS01890 PF02646 RmuC family APH_RS01920 PF10531 SLBB domain APH_RS01920 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APH_RS01920 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APH_RS01930 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APH_RS01935 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APH_RS01940 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APH_RS01940 PF00361 Proton-conducting membrane transporter APH_RS01945 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APH_RS01945 PF00361 Proton-conducting membrane transporter APH_RS01950 PF00361 Proton-conducting membrane transporter APH_RS01955 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APH_RS01955 PF13288 DXP reductoisomerase C-terminal domain APH_RS01955 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APH_RS01965 PF04551 GcpE protein APH_RS01970 PF00902 Sec-independent protein translocase protein (TatC) APH_RS01975 PF00873 AcrB/AcrD/AcrF family APH_RS01980 PF00575 S1 RNA binding domain APH_RS01980 PF13184 NusA-like KH domain APH_RS01980 PF08529 NusA N-terminal domain APH_RS01985 PF11987 Translation-initiation factor 2 APH_RS01985 PF04760 Translation initiation factor IF-2, N-terminal region APH_RS01985 PF00009 Elongation factor Tu GTP binding domain APH_RS01990 PF02033 Ribosome-binding factor A APH_RS01995 PF03764 Elongation factor G, domain IV APH_RS01995 PF00009 Elongation factor Tu GTP binding domain APH_RS01995 PF03144 Elongation factor Tu domain 2 APH_RS01995 PF14492 Elongation Factor G, domain II APH_RS01995 PF00679 Elongation factor G C-terminus APH_RS02000 PF03471 Transporter associated domain APH_RS02000 PF03741 Integral membrane protein TerC family APH_RS02005 PF07724 AAA domain (Cdc48 subfamily) APH_RS02005 PF10431 C-terminal, D2-small domain, of ClpB protein APH_RS02005 PF00004 ATPase family associated with various cellular activities (AAA) APH_RS02005 PF02861 Clp amino terminal domain, pathogenicity island component APH_RS02005 PF17871 AAA lid domain APH_RS02010 PF03144 Elongation factor Tu domain 2 APH_RS02010 PF00679 Elongation factor G C-terminus APH_RS02010 PF00009 Elongation factor Tu GTP binding domain APH_RS02055 PF00436 Single-strand binding protein family APH_RS02060 PF03462 PCRF domain APH_RS02060 PF00472 RF-1 domain APH_RS02070 PF02637 GatB domain APH_RS02070 PF02934 GatB/GatE catalytic domain APH_RS02090 PF11638 DnaA N-terminal domain APH_RS02090 PF08299 Bacterial dnaA protein helix-turn-helix APH_RS02090 PF00308 Bacterial dnaA protein APH_RS02105 PF03462 PCRF domain APH_RS02105 PF00472 RF-1 domain APH_RS02110 PF01709 Transcriptional regulator APH_RS02120 PF00202 Aminotransferase class-III APH_RS02120 PF06968 Biotin and Thiamin Synthesis associated domain APH_RS02120 PF04055 Radical SAM superfamily APH_RS02150 PF00923 Transaldolase/Fructose-6-phosphate aldolase APH_RS02160 PF02874 ATP synthase alpha/beta family, beta-barrel domain APH_RS02160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_RS02180 PF01728 FtsJ-like methyltransferase APH_RS02190 PF01416 tRNA pseudouridine synthase APH_RS02195 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APH_RS02195 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APH_RS02200 PF01728 FtsJ-like methyltransferase APH_RS02215 PF00444 Ribosomal protein L36 APH_RS02230 PF01192 RNA polymerase Rpb6 APH_RS02245 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APH_RS02250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APH_RS02255 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APH_RS02260 PF01975 Survival protein SurE APH_RS02265 PF03100 CcmE APH_RS02275 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APH_RS02280 PF01026 TatD related DNase APH_RS02290 PF13603 Leucyl-tRNA synthetase, Domain 2 APH_RS02290 PF08264 Anticodon-binding domain of tRNA APH_RS02290 PF00133 tRNA synthetases class I (I, L, M and V) APH_RS02290 PF09334 tRNA synthetases class I (M) APH_RS02305 PF17755 UvrA DNA-binding domain APH_RS02305 PF17760 UvrA interaction domain APH_RS02315 PF00885 6,7-dimethyl-8-ribityllumazine synthase APH_RS02320 PF02096 60Kd inner membrane protein APH_RS02320 PF14849 YidC periplasmic domain APH_RS02325 PF14849 YidC periplasmic domain APH_RS02325 PF02096 60Kd inner membrane protein APH_RS02330 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APH_RS02330 PF00384 Molybdopterin oxidoreductase APH_RS02330 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APH_RS02335 PF01066 CDP-alcohol phosphatidyltransferase APH_RS02340 PF02666 Phosphatidylserine decarboxylase APH_RS02345 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_RS02355 PF08207 Elongation factor P (EF-P) KOW-like domain APH_RS02355 PF09285 Elongation factor P, C-terminal APH_RS02355 PF01132 Elongation factor P (EF-P) OB domain APH_RS02360 PF00459 Inositol monophosphatase family APH_RS02365 PF01479 S4 domain APH_RS02365 PF00849 RNA pseudouridylate synthase APH_RS02370 PF00072 Response regulator receiver domain APH_RS02370 PF00990 Diguanylate cyclase, GGDEF domain APH_RS02380 PF05088 Bacterial NAD-glutamate dehydrogenase APH_RS02390 PF06055 Exopolysaccharide synthesis, ExoD APH_RS02395 PF09190 DALR domain APH_RS02395 PF01406 tRNA synthetases class I (C) catalytic domain APH_RS02405 PF00268 Ribonucleotide reductase, small chain APH_RS02430 PF01807 CHC2 zinc finger APH_RS02430 PF13662 Toprim domain APH_RS02430 PF08275 DNA primase catalytic core, N-terminal domain APH_RS02435 PF01624 MutS domain I APH_RS02435 PF05188 MutS domain II APH_RS02435 PF05190 MutS family domain IV APH_RS02435 PF05192 MutS domain III APH_RS02435 PF00488 MutS domain V APH_RS02440 PF00288 GHMP kinases N terminal domain APH_RS02440 PF08544 GHMP kinases C terminal APH_RS02445 PF01207 Dihydrouridine synthase (Dus) APH_RS02450 PF00140 Sigma-70 factor, region 1.2 APH_RS02450 PF04546 Sigma-70, non-essential region APH_RS02450 PF04545 Sigma-70, region 4 APH_RS02450 PF04539 Sigma-70 region 3 APH_RS02450 PF04542 Sigma-70 region 2 APH_RS02450 PF03979 Sigma-70 factor, region 1.1 APH_RS02465 PF03091 CutA1 divalent ion tolerance protein APH_RS02470 PF13188 PAS domain APH_RS02470 PF00072 Response regulator receiver domain APH_RS02470 PF08448 PAS fold APH_RS02470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_RS02470 PF00512 His Kinase A (phospho-acceptor) domain APH_RS02490 PF01964 Radical SAM ThiC family APH_RS02490 PF13667 ThiC-associated domain APH_RS02495 PF03853 YjeF-related protein N-terminus APH_RS02495 PF01256 Carbohydrate kinase APH_RS02510 PF01131 DNA topoisomerase APH_RS02510 PF01751 Toprim domain APH_RS02510 PF01396 Topoisomerase DNA binding C4 zinc finger APH_RS02510 PF13368 Topoisomerase C-terminal repeat APH_RS02515 PF01964 Radical SAM ThiC family APH_RS02515 PF13667 ThiC-associated domain APH_RS02540 PF01921 tRNA synthetases class I (K) APH_RS02555 PF00814 Glycoprotease family APH_RS02600 PF00398 Ribosomal RNA adenine dimethylase APH_RS02610 PF00121 Triosephosphate isomerase APH_RS02615 PF16868 NMT1-like family APH_RS02620 PF00814 Glycoprotease family APH_RS02635 PF00056 lactate/malate dehydrogenase, NAD binding domain APH_RS02635 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APH_RS02685 PF02502 Ribose/Galactose Isomerase APH_RS02700 PF01648 4'-phosphopantetheinyl transferase superfamily APH_RS02705 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APH_RS02705 PF03129 Anticodon binding domain APH_RS02720 PF01467 Cytidylyltransferase-like APH_RS02725 PF01467 Cytidylyltransferase-like APH_RS02755 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_RS02760 PF10417 C-terminal domain of 1-Cys peroxiredoxin APH_RS02760 PF00578 AhpC/TSA family APH_RS02765 PF00155 Aminotransferase class I and II APH_RS02790 PF00171 Aldehyde dehydrogenase family APH_RS02790 PF14850 DNA-binding domain of Proline dehydrogenase APH_RS02790 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APH_RS02790 PF01619 Proline dehydrogenase APH_RS02795 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APH_RS02800 PF00266 Aminotransferase class-V APH_RS02805 PF00266 Aminotransferase class-V APH_RS02810 PF01592 NifU-like N terminal domain APH_RS02815 PF01521 Iron-sulphur cluster biosynthesis APH_RS02820 PF07743 HSCB C-terminal oligomerisation domain APH_RS02820 PF00226 DnaJ domain APH_RS02825 PF00012 Hsp70 protein APH_RS02830 PF00111 2Fe-2S iron-sulfur cluster binding domain APH_RS02870 PF01795 MraW methylase family APH_RS02885 PF01018 GTP1/OBG APH_RS02885 PF01926 50S ribosome-binding GTPase APH_RS02890 PF03952 Enolase, N-terminal domain APH_RS02890 PF00113 Enolase, C-terminal TIM barrel domain APH_RS02900 PF00829 Ribosomal prokaryotic L21 protein APH_RS02905 PF01016 Ribosomal L27 protein APH_RS02915 PF00750 tRNA synthetases class I (R) APH_RS02915 PF03485 Arginyl tRNA synthetase N terminal domain APH_RS02915 PF05746 DALR anticodon binding domain APH_RS02920 PF01523 Putative modulator of DNA gyrase APH_RS02925 PF01227 GTP cyclohydrolase I APH_RS02930 PF00231 ATP synthase APH_RS02945 PF00146 NADH dehydrogenase APH_RS02950 PF00384 Molybdopterin oxidoreductase APH_RS02950 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APH_RS02950 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APH_RS02960 PF01751 Toprim domain APH_RS02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_RS02960 PF00204 DNA gyrase B APH_RS02960 PF00986 DNA gyrase B subunit, carboxyl terminus APH_RS03005 PF00929 Exonuclease APH_RS03015 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APH_RS03020 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_RS03025 PF00586 AIR synthase related protein, N-terminal domain APH_RS03025 PF02769 AIR synthase related protein, C-terminal domain APH_RS03030 PF11967 Recombination protein O N terminal APH_RS03030 PF02565 Recombination protein O C terminal APH_RS03060 PF01565 FAD binding domain APH_RS03060 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APH_RS03065 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APH_RS03065 PF03900 Porphobilinogen deaminase, C-terminal domain APH_RS03070 PF08245 Mur ligase middle domain APH_RS03070 PF02875 Mur ligase family, glutamate ligase domain APH_RS03080 PF01425 Amidase APH_RS03085 PF02441 Flavoprotein APH_RS03095 PF01078 Magnesium chelatase, subunit ChlI APH_RS03095 PF13335 Magnesium chelatase, subunit ChlI C-terminal APH_RS03110 PF00140 Sigma-70 factor, region 1.2 APH_RS03110 PF04545 Sigma-70, region 4 APH_RS03110 PF04542 Sigma-70 region 2 APH_RS03120 PF06421 GTP-binding protein LepA C-terminus APH_RS03120 PF03144 Elongation factor Tu domain 2 APH_RS03120 PF00679 Elongation factor G C-terminus APH_RS03120 PF00009 Elongation factor Tu GTP binding domain APH_RS03130 PF00013 KH domain APH_RS03130 PF00575 S1 RNA binding domain APH_RS03130 PF03725 3' exoribonuclease family, domain 2 APH_RS03130 PF01138 3' exoribonuclease family, domain 1 APH_RS03130 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APH_RS03135 PF00312 Ribosomal protein S15 APH_RS03140 PF01509 TruB family pseudouridylate synthase (N terminal domain) APH_RS03140 PF16198 tRNA pseudouridylate synthase B C-terminal domain APH_RS03175 PF01121 Dephospho-CoA kinase APH_RS03180 PF03481 Putative GTP-binding controlling metal-binding APH_RS03180 PF01300 Telomere recombination APH_RS03185 PF09115 DNA polymerase III, delta subunit, C terminal APH_RS03195 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APH_RS03200 PF01467 Cytidylyltransferase-like APH_RS03215 PF04452 RNA methyltransferase APH_RS03220 PF00578 AhpC/TSA family APH_RS03225 PF00133 tRNA synthetases class I (I, L, M and V) APH_RS03225 PF08264 Anticodon-binding domain of tRNA APH_RS03235 PF12838 4Fe-4S dicluster domain APH_RS03240 PF10502 Signal peptidase, peptidase S26 APH_RS03245 PF01521 Iron-sulphur cluster biosynthesis APH_RS03275 PF00231 ATP synthase APH_RS03395 PF08946 Osmosensory transporter coiled coil APH_RS03395 PF00083 Sugar (and other) transporter APH_RS03405 PF00490 Delta-aminolevulinic acid dehydratase APH_RS03425 PF05192 MutS domain III APH_RS03425 PF05188 MutS domain II APH_RS03425 PF00488 MutS domain V APH_RS03425 PF01624 MutS domain I APH_RS03425 PF05190 MutS family domain IV APH_RS03435 PF01230 HIT domain APH_RS03445 PF16078 2-oxoglutarate dehydrogenase N-terminus APH_RS03445 PF00676 Dehydrogenase E1 component APH_RS03445 PF16870 2-oxoglutarate dehydrogenase C-terminal APH_RS03445 PF02779 Transketolase, pyrimidine binding domain APH_RS03455 PF10397 Adenylosuccinate lyase C-terminus APH_RS03455 PF00206 Lyase APH_RS03475 PF02237 Biotin protein ligase C terminal domain APH_RS03475 PF08279 HTH domain APH_RS03475 PF03099 Biotin/lipoate A/B protein ligase family APH_RS03500 PF04055 Radical SAM superfamily APH_RS03500 PF00919 Uncharacterized protein family UPF0004 APH_RS03520 PF08459 UvrC Helix-hairpin-helix N-terminal APH_RS03520 PF01541 GIY-YIG catalytic domain APH_RS03525 PF00183 Hsp90 protein APH_RS03525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_RS03550 PF00730 HhH-GPD superfamily base excision DNA repair protein APH_RS03550 PF00633 Helix-hairpin-helix motif APH_RS03555 PF03989 DNA gyrase C-terminal domain, beta-propeller APH_RS03555 PF00521 DNA gyrase/topoisomerase IV, subunit A APH_RS03570 PF13361 UvrD-like helicase C-terminal domain APH_RS03570 PF00580 UvrD/REP helicase N-terminal domain APH_RS03605 PF03232 Ubiquinone biosynthesis protein COQ7 APH_RS03670 PF00471 Ribosomal protein L33 APH_RS03685 PF00550 Phosphopantetheine attachment site APH_RS03690 PF02801 Beta-ketoacyl synthase, C-terminal domain APH_RS03690 PF00109 Beta-ketoacyl synthase, N-terminal domain APH_RS03695 PF17782 DprA winged helix domain APH_RS03695 PF02481 DNA recombination-mediator protein A APH_RS03720 PF01617 Surface antigen APH_RS03725 PF08676 MutL C terminal dimerisation domain APH_RS03725 PF01119 DNA mismatch repair protein, C-terminal domain APH_RS03730 PF01618 MotA/TolQ/ExbB proton channel family APH_RS03745 PF00512 His Kinase A (phospho-acceptor) domain APH_RS03745 PF00989 PAS fold APH_RS03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APH_RS03750 PF00202 Aminotransferase class-III APH_RS03770 PF17854 FtsK alpha domain APH_RS03770 PF09397 Ftsk gamma domain APH_RS03770 PF01580 FtsK/SpoIIIE family APH_RS03770 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APH_RS03780 PF01595 Cyclin M transmembrane N-terminal domain APH_RS03780 PF00571 CBS domain APH_RS03780 PF03471 Transporter associated domain APH_RS03790 PF03618 Kinase/pyrophosphorylase APH_RS03795 PF00581 Rhodanese-like domain APH_RS03795 PF17773 UPF0176 acylphosphatase like domain APH_RS03810 PF02911 Formyl transferase, C-terminal domain APH_RS03810 PF00551 Formyl transferase APH_RS03820 PF02190 ATP-dependent protease La (LON) substrate-binding domain APH_RS03820 PF05362 Lon protease (S16) C-terminal proteolytic domain APH_RS03820 PF00004 ATPase family associated with various cellular activities (AAA) APH_RS03825 PF06689 ClpX C4-type zinc finger APH_RS03825 PF10431 C-terminal, D2-small domain, of ClpB protein APH_RS03825 PF07724 AAA domain (Cdc48 subfamily) APH_RS03830 PF00574 Clp protease APH_RS03835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APH_RS03835 PF05697 Bacterial trigger factor protein (TF) APH_RS03835 PF05698 Bacterial trigger factor protein (TF) C-terminus APH_RS03870 PF00155 Aminotransferase class I and II APH_RS03885 PF01297 Zinc-uptake complex component A periplasmic APH_RS03890 PF00005 ABC transporter APH_RS03895 PF03109 ABC1 family APH_RS03905 PF08402 TOBE domain APH_RS03905 PF00005 ABC transporter APH_RS03910 PF02416 mttA/Hcf106 family APH_RS03915 PF02132 RecR protein APH_RS03915 PF13662 Toprim domain APH_RS03920 PF00163 Ribosomal protein S4/S9 N-terminal domain APH_RS03920 PF01479 S4 domain APH_RS03930 PF02581 Thiamine monophosphate synthase APH_RS03930 PF08543 Phosphomethylpyrimidine kinase APH_RS03940 PF01594 AI-2E family transporter APH_RS03955 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APH_RS03960 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APH_RS03970 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APH_RS03975 PF02811 PHP domain APH_RS03975 PF14579 Helix-hairpin-helix motif APH_RS03975 PF07733 Bacterial DNA polymerase III alpha NTPase domain APH_RS03975 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APH_RS03990 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APH_RS03990 PF01243 Pyridoxamine 5'-phosphate oxidase APH_RS03995 PF02230 Phospholipase/Carboxylesterase APH_RS04000 PF01327 Polypeptide deformylase APH_RS04005 PF01180 Dihydroorotate dehydrogenase APH_RS04010 PF03309 Type III pantothenate kinase APH_RS04020 PF00155 Aminotransferase class I and II APH_RS04050 PF01351 Ribonuclease HII APH_RS04055 PF04998 RNA polymerase Rpb1, domain 5 APH_RS04055 PF05000 RNA polymerase Rpb1, domain 4 APH_RS04055 PF04983 RNA polymerase Rpb1, domain 3 APH_RS04055 PF00623 RNA polymerase Rpb1, domain 2 APH_RS04055 PF04997 RNA polymerase Rpb1, domain 1 APH_RS04060 PF04560 RNA polymerase Rpb2, domain 7 APH_RS04060 PF00562 RNA polymerase Rpb2, domain 6 APH_RS04060 PF10385 RNA polymerase beta subunit external 1 domain APH_RS04060 PF04565 RNA polymerase Rpb2, domain 3 APH_RS04060 PF04561 RNA polymerase Rpb2, domain 2 APH_RS04060 PF04563 RNA polymerase beta subunit APH_RS04065 PF00542 Ribosomal protein L7/L12 C-terminal domain APH_RS04070 PF00466 Ribosomal protein L10 APH_RS04075 PF00687 Ribosomal protein L1p/L10e family APH_RS04080 PF00298 Ribosomal protein L11, RNA binding domain APH_RS04080 PF03946 Ribosomal protein L11, N-terminal domain APH_RS04085 PF00467 KOW motif APH_RS04085 PF02357 Transcription termination factor nusG APH_RS04100 PF00009 Elongation factor Tu GTP binding domain APH_RS04100 PF03144 Elongation factor Tu domain 2 APH_RS04100 PF03143 Elongation factor Tu C-terminal domain APH_RS04105 PF03144 Elongation factor Tu domain 2 APH_RS04105 PF00009 Elongation factor Tu GTP binding domain APH_RS04105 PF03764 Elongation factor G, domain IV APH_RS04105 PF14492 Elongation Factor G, domain II APH_RS04105 PF00679 Elongation factor G C-terminus APH_RS04110 PF00177 Ribosomal protein S7p/S5e APH_RS04115 PF00164 Ribosomal protein S12/S23 APH_RS04120 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APH_RS04120 PF12706 Beta-lactamase superfamily domain APH_RS04120 PF17770 Ribonuclease J C-terminal domain APH_RS04125 PF04052 TolB amino-terminal domain APH_RS04125 PF07676 WD40-like Beta Propeller Repeat APH_RS04145 PF00529 HlyD membrane-fusion protein of T1SS APH_RS04150 PF00528 Binding-protein-dependent transport system inner membrane component APH_RS04155 PF03060 Nitronate monooxygenase APH_RS04160 PF02630 SCO1/SenC APH_RS04170 PF01165 Ribosomal protein S21 APH_RS04175 PF08442 ATP-grasp domain APH_RS04175 PF00549 CoA-ligase APH_RS04180 PF02629 CoA binding domain APH_RS04180 PF00549 CoA-ligase APH_RS04185 PF01171 PP-loop family APH_RS04190 PF00814 Glycoprotease family APH_RS04195 PF01411 tRNA synthetases class II (A) APH_RS04195 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APH_RS04200 PF00528 Binding-protein-dependent transport system inner membrane component APH_RS04245 PF07992 Pyridine nucleotide-disulphide oxidoreductase APH_RS04245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APH_RS04250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_RS04250 PF07498 Rho termination factor, N-terminal domain APH_RS04250 PF07497 Rho termination factor, RNA-binding domain APH_RS04255 PF00227 Proteasome subunit APH_RS04260 PF00004 ATPase family associated with various cellular activities (AAA) APH_RS04260 PF10431 C-terminal, D2-small domain, of ClpB protein APH_RS04260 PF07724 AAA domain (Cdc48 subfamily) APH_RS04265 PF01209 ubiE/COQ5 methyltransferase family APH_RS04290 PF08264 Anticodon-binding domain of tRNA APH_RS04290 PF09334 tRNA synthetases class I (M) APH_RS04310 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APH_RS04310 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APH_RS04315 PF00115 Cytochrome C and Quinol oxidase polypeptide I APH_RS04320 PF01040 UbiA prenyltransferase family APH_RS04325 PF13525 Outer membrane lipoprotein APH_RS04330 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APH_RS04330 PF02844 Phosphoribosylglycinamide synthetase, N domain APH_RS04330 PF02843 Phosphoribosylglycinamide synthetase, C domain APH_RS04335 PF02699 Preprotein translocase subunit APH_RS04340 PF01171 PP-loop family APH_RS04345 PF00814 Glycoprotease family APH_RS04350 PF01411 tRNA synthetases class II (A) APH_RS04350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APH_RS04355 PF00712 DNA polymerase III beta subunit, N-terminal domain APH_RS04355 PF02768 DNA polymerase III beta subunit, C-terminal domain APH_RS04355 PF02767 DNA polymerase III beta subunit, central domain APH_RS04365 PF00486 Transcriptional regulatory protein, C terminal APH_RS04365 PF00072 Response regulator receiver domain APH_RS04375 PF00719 Inorganic pyrophosphatase APH_RS04395 PF00380 Ribosomal protein S9/S16 APH_RS04400 PF00572 Ribosomal protein L13 APH_RS04415 PF10609 NUBPL iron-transfer P-loop NTPase APH_RS04420 PF14572 Phosphoribosyl synthetase-associated domain APH_RS04420 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APH_RS04425 PF02686 Glu-tRNAGln amidotransferase C subunit APH_RS04445 PF00694 Aconitase C-terminal domain APH_RS04445 PF00330 Aconitase family (aconitate hydratase) APH_RS04455 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APH_RS04455 PF02222 ATP-grasp domain APH_RS04460 PF04379 ApaG domain APH_RS04580 PF01145 SPFH domain / Band 7 family APH_RS04585 PF01145 SPFH domain / Band 7 family APH_RS04590 PF13180 PDZ domain APH_RS04595 PF14622 Ribonuclease-III-like APH_RS04595 PF00035 Double-stranded RNA binding motif APH_RS04600 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 APH_RS04645 PF00675 Insulinase (Peptidase family M16) APH_RS04645 PF05193 Peptidase M16 inactive domain APH_RS04650 PF01252 Signal peptidase (SPase) II APH_RS04655 PF01687 Riboflavin kinase APH_RS04655 PF06574 FAD synthetase APH_RS04660 PF00462 Glutaredoxin APH_RS04670 PF02491 SHS2 domain inserted in FTSA APH_RS04675 PF01368 DHH family APH_RS04675 PF02272 DHHA1 domain APH_RS04675 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APH_RS04675 PF17768 RecJ OB domain APH_RS04680 PF18324 Hypothetical protein TT1725 APH_RS04680 PF00180 Isocitrate/isopropylmalate dehydrogenase APH_RS04705 PF02104 SURF1 family APH_RS04710 PF00156 Phosphoribosyl transferase domain APH_RS04715 PF00899 ThiF family APH_RS04730 PF07516 SecA Wing and Scaffold domain APH_RS04730 PF02810 SEC-C motif APH_RS04730 PF01043 SecA preprotein cross-linking domain APH_RS04730 PF07517 SecA DEAD-like domain APH_RS04735 PF00004 ATPase family associated with various cellular activities (AAA) APH_RS04735 PF06480 FtsH Extracellular APH_RS04735 PF01434 Peptidase family M41 APH_RS04735 PF17862 AAA+ lid domain APH_RS04750 PF02386 Cation transport protein APH_RS04755 PF02491 SHS2 domain inserted in FTSA APH_RS04780 PF00137 ATP synthase subunit C APH_RS04785 PF00119 ATP synthase A chain APH_RS04790 PF13685 Iron-containing alcohol dehydrogenase APH_RS04805 PF00132 Bacterial transferase hexapeptide (six repeats) APH_RS04810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APH_RS04810 PF00364 Biotin-requiring enzyme APH_RS04810 PF02817 e3 binding domain APH_RS04815 PF00557 Metallopeptidase family M24 APH_RS04820 PF17827 PrmC N-terminal domain APH_RS04820 PF13847 Methyltransferase domain APH_RS04835 PF01578 Cytochrome C assembly protein APH_RS04835 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APH_RS04840 PF00115 Cytochrome C and Quinol oxidase polypeptide I APH_RS04845 PF01066 CDP-alcohol phosphatidyltransferase APH_RS04850 PF02142 MGS-like domain APH_RS04850 PF01808 AICARFT/IMPCHase bienzyme APH_RS04855 PF07977 FabA-like domain APH_RS04865 PF01103 Surface antigen APH_RS04865 PF07244 Surface antigen variable number repeat APH_RS04870 PF17820 PDZ domain APH_RS04870 PF02163 Peptidase family M50 APH_RS04885 PF07943 Penicillin-binding protein 5, C-terminal domain APH_RS04885 PF00768 D-alanyl-D-alanine carboxypeptidase APH_RS04895 PF13735 tRNA nucleotidyltransferase domain 2 putative APH_RS04895 PF01743 Poly A polymerase head domain APH_RS04895 PF12627 Probable RNA and SrmB- binding site of polymerase A APH_RS04900 PF00334 Nucleoside diphosphate kinase APH_RS04905 PF01381 Helix-turn-helix APH_RS04930 PF00154 recA bacterial DNA recombination protein APH_RS04935 PF00133 tRNA synthetases class I (I, L, M and V) APH_RS04935 PF08264 Anticodon-binding domain of tRNA APH_RS04950 PF00448 SRP54-type protein, GTPase domain APH_RS04950 PF02881 SRP54-type protein, helical bundle domain APH_RS04980 PF00285 Citrate synthase, C-terminal domain APH_RS04985 PF00117 Glutamine amidotransferase class-I APH_RS04985 PF00958 GMP synthase C terminal domain APH_RS05005 PF01617 Surface antigen APH_RS05025 PF00155 Aminotransferase class I and II APH_RS05030 PF00579 tRNA synthetases class I (W and Y) APH_RS05040 PF03951 Glutamine synthetase, beta-Grasp domain APH_RS05040 PF00120 Glutamine synthetase, catalytic domain APH_RS05045 PF00348 Polyprenyl synthetase APH_RS05080 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APH_RS05080 PF00364 Biotin-requiring enzyme APH_RS05080 PF02817 e3 binding domain APH_RS05085 PF01791 DeoC/LacD family aldolase APH_RS05100 PF05198 Translation initiation factor IF-3, N-terminal domain APH_RS05100 PF00707 Translation initiation factor IF-3, C-terminal domain APH_RS05105 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APH_RS05105 PF03129 Anticodon binding domain APH_RS05105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APH_RS05110 PF00994 Probable molybdopterin binding domain APH_RS05110 PF02464 Competence-damaged protein APH_RS05110 PF18146 Damage-inducible protein CinA KH domain APH_RS05115 PF01245 Ribosomal protein L19 APH_RS05120 PF01746 tRNA (Guanine-1)-methyltransferase APH_RS05125 PF01782 RimM N-terminal domain APH_RS05140 PF01578 Cytochrome C assembly protein APH_RS05140 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APH_RS05160 PF02542 YgbB family APH_RS05165 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APH_RS05165 PF02542 YgbB family APH_RS05175 PF00731 AIR carboxylase APH_RS05185 PF00216 Bacterial DNA-binding protein APH_RS05195 PF01926 50S ribosome-binding GTPase APH_RS05195 PF06071 Protein of unknown function (DUF933) APH_RS05215 PF01926 50S ribosome-binding GTPase APH_RS05215 PF10396 GTP-binding protein TrmE N-terminus APH_RS05215 PF12631 MnmE helical domain APH_RS05220 PF02130 Uncharacterized protein family UPF0054 APH_RS05230 PF00091 Tubulin/FtsZ family, GTPase domain APH_RS05230 PF12327 FtsZ family, C-terminal domain APH_RS05240 PF02075 Crossover junction endodeoxyribonuclease RuvC APH_RS05250 PF04127 DNA / pantothenate metabolism flavoprotein APH_RS05250 PF02441 Flavoprotein APH_RS05255 PF17191 RecG wedge domain APH_RS05255 PF00270 DEAD/DEAH box helicase APH_RS05255 PF00271 Helicase conserved C-terminal domain APH_RS05260 PF01370 NAD dependent epimerase/dehydratase family APH_RS05265 PF13537 Glutamine amidotransferase domain APH_RS05265 PF00156 Phosphoribosyl transferase domain APH_RS05270 PF01195 Peptidyl-tRNA hydrolase APH_RS05275 PF14693 Ribosomal protein TL5, C-terminal domain APH_RS05275 PF01386 Ribosomal L25p family APH_RS05280 PF00156 Phosphoribosyl transferase domain APH_RS05285 PF02254 TrkA-N domain APH_RS05285 PF00999 Sodium/hydrogen exchanger family APH_RS05295 PF03653 Uncharacterised protein family (UPF0093) APH_RS05300 PF02780 Transketolase, C-terminal domain APH_RS05300 PF02779 Transketolase, pyrimidine binding domain APH_RS05315 PF01523 Putative modulator of DNA gyrase APH_RS05335 PF00925 GTP cyclohydrolase II APH_RS05355 PF00925 GTP cyclohydrolase II APH_RS05365 PF00162 Phosphoglycerate kinase APH_RS05370 PF13742 OB-fold nucleic acid binding domain APH_RS05370 PF02601 Exonuclease VII, large subunit APH_RS05390 PF07549 SecD/SecF GG Motif APH_RS05390 PF02355 Protein export membrane protein APH_RS05395 PF02021 Uncharacterised protein family UPF0102 APH_RS05410 PF01668 SmpB protein APH_RS05415 PF00925 GTP cyclohydrolase II APH_RS05415 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APH_RS05420 PF03449 Transcription elongation factor, N-terminal APH_RS05420 PF01272 Transcription elongation factor, GreA/GreB, C-term APH_RS05425 PF02874 ATP synthase alpha/beta family, beta-barrel domain APH_RS05425 PF00306 ATP synthase alpha/beta chain, C terminal domain APH_RS05425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APH_RS05430 PF00213 ATP synthase delta (OSCP) subunit APH_RS05450 PF12704 MacB-like periplasmic core domain APH_RS05450 PF02687 FtsX-like permease family APH_RS05465 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APH_RS05470 PF01027 Inhibitor of apoptosis-promoting Bax1 APH_RS05475 PF01118 Semialdehyde dehydrogenase, NAD binding domain APH_RS05475 PF02774 Semialdehyde dehydrogenase, dimerisation domain APH_RS05485 PF12169 DNA polymerase III subunits gamma and tau domain III APH_RS05490 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APH_RS05490 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APH_RS05510 PF00154 recA bacterial DNA recombination protein APH_RS05535 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APH_RS05545 PF02355 Protein export membrane protein APH_RS05550 PF02151 UvrB/uvrC motif APH_RS05550 PF12344 Ultra-violet resistance protein B APH_RS05550 PF04851 Type III restriction enzyme, res subunit APH_RS05550 PF17757 UvrB interaction domain APH_RS05550 PF00271 Helicase conserved C-terminal domain APH_RS05570 PF01327 Polypeptide deformylase APH_RS05575 PF01553 Acyltransferase APH_RS05580 PF01649 Ribosomal protein S20 APH_RS05585 PF01327 Polypeptide deformylase APH_RS05595 PF01790 Prolipoprotein diacylglyceryl transferase APH_RS05600 PF03023 Lipid II flippase MurJ APH_RS05680 PF01545 Cation efflux family APH_RS05695 PF01258 Prokaryotic dksA/traR C4-type zinc finger APH_RS05710 PF02534 Type IV secretory system Conjugative DNA transfer APH_RS05715 PF00437 Type II/IV secretion system protein APH_RS05720 PF03743 Bacterial conjugation TrbI-like protein APH_RS05740 PF02463 RecF/RecN/SMC N terminal domain APH_RS05790 PF01227 GTP cyclohydrolase I APH_RS05825 PF04610 TrbL/VirB6 plasmid conjugal transfer protein APH_RS05830 PF04610 TrbL/VirB6 plasmid conjugal transfer protein APH_RS05840 PF01029 NusB family APH_RS05860 PF01467 Cytidylyltransferase-like APH_RS05865 PF02540 NAD synthase APH_RS05865 PF00795 Carbon-nitrogen hydrolase APH_RS05880 PF02581 Thiamine monophosphate synthase