locus-tag class description YYU_RS00005 PF01367 5'-3' exonuclease, C-terminal SAM fold YYU_RS00005 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YYU_RS00005 PF00476 DNA polymerase family A YYU_RS00010 PF00834 Ribulose-phosphate 3 epimerase family YYU_RS00015 PF02405 Permease MlaE YYU_RS00020 PF00005 ABC transporter YYU_RS00040 PF00438 S-adenosylmethionine synthetase, N-terminal domain YYU_RS00040 PF02773 S-adenosylmethionine synthetase, C-terminal domain YYU_RS00040 PF02772 S-adenosylmethionine synthetase, central domain YYU_RS00050 PF01494 FAD binding domain YYU_RS00065 PF02091 Glycyl-tRNA synthetase alpha subunit YYU_RS00070 PF02092 Glycyl-tRNA synthetase beta subunit YYU_RS00070 PF05746 DALR anticodon binding domain YYU_RS00075 PF00226 DnaJ domain YYU_RS00075 PF01556 DnaJ C terminal domain YYU_RS00075 PF00684 DnaJ central domain YYU_RS00080 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YYU_RS00080 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YYU_RS00085 PF02660 Glycerol-3-phosphate acyltransferase YYU_RS00090 PF02075 Crossover junction endodeoxyribonuclease RuvC YYU_RS00095 PF00510 Cytochrome c oxidase subunit III YYU_RS00100 PF01208 Uroporphyrinogen decarboxylase (URO-D) YYU_RS00105 PF03471 Transporter associated domain YYU_RS00105 PF00571 CBS domain YYU_RS00115 PF04860 Phage portal protein YYU_RS00120 PF13847 Methyltransferase domain YYU_RS00125 PF02445 Quinolinate synthetase A protein YYU_RS00130 PF11953 Domain of unknown function (DUF3470) YYU_RS00130 PF00037 4Fe-4S binding domain YYU_RS00160 PF00579 tRNA synthetases class I (W and Y) YYU_RS00165 PF01025 GrpE YYU_RS00170 PF01872 RibD C-terminal domain YYU_RS00170 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YYU_RS00175 PF00117 Glutamine amidotransferase class-I YYU_RS00175 PF06418 CTP synthase N-terminus YYU_RS00185 PF00589 Phage integrase family YYU_RS00185 PF02899 Phage integrase, N-terminal SAM-like domain YYU_RS00190 PF00005 ABC transporter YYU_RS00195 PF01515 Phosphate acetyl/butaryl transferase YYU_RS00195 PF03949 Malic enzyme, NAD binding domain YYU_RS00195 PF00390 Malic enzyme, N-terminal domain YYU_RS00205 PF00361 Proton-conducting membrane transporter YYU_RS00215 PF02470 MlaD protein YYU_RS00225 PF03477 ATP cone domain YYU_RS00245 PF13416 Bacterial extracellular solute-binding protein YYU_RS00250 PF03966 Trm112p-like protein YYU_RS00255 PF08946 Osmosensory transporter coiled coil YYU_RS00255 PF00083 Sugar (and other) transporter YYU_RS00260 PF00886 Ribosomal protein S16 YYU_RS00270 PF02772 S-adenosylmethionine synthetase, central domain YYU_RS00270 PF02773 S-adenosylmethionine synthetase, C-terminal domain YYU_RS00270 PF00438 S-adenosylmethionine synthetase, N-terminal domain YYU_RS00280 PF01409 tRNA synthetases class II core domain (F) YYU_RS00280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YYU_RS00285 PF00453 Ribosomal protein L20 YYU_RS00290 PF01632 Ribosomal protein L35 YYU_RS00300 PF07497 Rho termination factor, RNA-binding domain YYU_RS00300 PF07498 Rho termination factor, N-terminal domain YYU_RS00300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YYU_RS00305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYU_RS00305 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_RS00310 PF01556 DnaJ C terminal domain YYU_RS00310 PF00226 DnaJ domain YYU_RS00310 PF00684 DnaJ central domain YYU_RS00315 PF01106 NifU-like domain YYU_RS00330 PF05690 Thiazole biosynthesis protein ThiG YYU_RS00340 PF00749 tRNA synthetases class I (E and Q), catalytic domain YYU_RS00380 PF02609 Exonuclease VII small subunit YYU_RS00385 PF00085 Thioredoxin YYU_RS00395 PF00676 Dehydrogenase E1 component YYU_RS00400 PF12146 Serine aminopeptidase, S33 YYU_RS00415 PF00551 Formyl transferase YYU_RS00420 PF00478 IMP dehydrogenase / GMP reductase domain YYU_RS00420 PF00571 CBS domain YYU_RS00425 PF01513 ATP-NAD kinase YYU_RS00435 PF04860 Phage portal protein YYU_RS00440 PF00698 Acyl transferase domain YYU_RS00445 PF02223 Thymidylate kinase YYU_RS00465 PF02556 Preprotein translocase subunit SecB YYU_RS00470 PF13462 Thioredoxin YYU_RS00480 PF05193 Peptidase M16 inactive domain YYU_RS00480 PF00675 Insulinase (Peptidase family M16) YYU_RS00495 PF00696 Amino acid kinase family YYU_RS00505 PF00677 Lumazine binding domain YYU_RS00510 PF17757 UvrB interaction domain YYU_RS00510 PF02559 CarD-like/TRCF domain YYU_RS00510 PF00270 DEAD/DEAH box helicase YYU_RS00510 PF00271 Helicase conserved C-terminal domain YYU_RS00510 PF03461 TRCF domain YYU_RS00515 PF00075 RNase H YYU_RS00525 PF00696 Amino acid kinase family YYU_RS00530 PF01765 Ribosome recycling factor YYU_RS00560 PF01259 SAICAR synthetase YYU_RS00565 PF03129 Anticodon binding domain YYU_RS00565 PF13393 Histidyl-tRNA synthetase YYU_RS00575 PF02628 Cytochrome oxidase assembly protein YYU_RS00580 PF00005 ABC transporter YYU_RS00585 PF12327 FtsZ family, C-terminal domain YYU_RS00585 PF00091 Tubulin/FtsZ family, GTPase domain YYU_RS00615 PF00313 'Cold-shock' DNA-binding domain YYU_RS00620 PF00989 PAS fold YYU_RS00620 PF00512 His Kinase A (phospho-acceptor) domain YYU_RS00620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_RS00620 PF00672 HAMP domain YYU_RS00625 PF00570 HRDC domain YYU_RS00625 PF01612 3'-5' exonuclease YYU_RS00630 PF12826 Helix-hairpin-helix motif YYU_RS00630 PF00533 BRCA1 C Terminus (BRCT) domain YYU_RS00630 PF03120 NAD-dependent DNA ligase OB-fold domain YYU_RS00630 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YYU_RS00630 PF01653 NAD-dependent DNA ligase adenylation domain YYU_RS00635 PF00462 Glutaredoxin YYU_RS00645 PF08534 Redoxin YYU_RS00670 PF00625 Guanylate kinase YYU_RS00685 PF01250 Ribosomal protein S6 YYU_RS00690 PF01084 Ribosomal protein S18 YYU_RS00695 PF03948 Ribosomal protein L9, C-terminal domain YYU_RS00695 PF01281 Ribosomal protein L9, N-terminal domain YYU_RS00700 PF00464 Serine hydroxymethyltransferase YYU_RS00710 PF00005 ABC transporter YYU_RS00710 PF00664 ABC transporter transmembrane region YYU_RS00715 PF00890 FAD binding domain YYU_RS00715 PF02910 Fumarate reductase flavoprotein C-term YYU_RS00720 PF13085 2Fe-2S iron-sulfur cluster binding domain YYU_RS00720 PF13237 4Fe-4S dicluster domain YYU_RS00725 PF02910 Fumarate reductase flavoprotein C-term YYU_RS00725 PF00890 FAD binding domain YYU_RS00730 PF13237 4Fe-4S dicluster domain YYU_RS00730 PF13085 2Fe-2S iron-sulfur cluster binding domain YYU_RS00735 PF02511 Thymidylate synthase complementing protein YYU_RS00740 PF07690 Major Facilitator Superfamily YYU_RS00750 PF02091 Glycyl-tRNA synthetase alpha subunit YYU_RS00755 PF17864 RuvB AAA lid domain YYU_RS00755 PF05496 Holliday junction DNA helicase RuvB P-loop domain YYU_RS00755 PF05491 RuvB C-terminal winged helix domain YYU_RS00760 PF01330 RuvA N terminal domain YYU_RS00760 PF07499 RuvA, C-terminal domain YYU_RS00765 PF01578 Cytochrome C assembly protein YYU_RS00770 PF00625 Guanylate kinase YYU_RS00785 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YYU_RS00785 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YYU_RS00810 PF00034 Cytochrome c YYU_RS00815 PF00361 Proton-conducting membrane transporter YYU_RS00820 PF02896 PEP-utilising enzyme, TIM barrel domain YYU_RS00820 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YYU_RS00820 PF00391 PEP-utilising enzyme, mobile domain YYU_RS00830 PF13419 Haloacid dehalogenase-like hydrolase YYU_RS00845 PF00152 tRNA synthetases class II (D, K and N) YYU_RS00845 PF02938 GAD domain YYU_RS00845 PF01336 OB-fold nucleic acid binding domain YYU_RS00850 PF04972 BON domain YYU_RS00855 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YYU_RS00855 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YYU_RS00860 PF03799 Cell division protein FtsQ YYU_RS00860 PF08478 POTRA domain, FtsQ-type YYU_RS00865 PF02954 Bacterial regulatory protein, Fis family YYU_RS00865 PF00072 Response regulator receiver domain YYU_RS00865 PF00158 Sigma-54 interaction domain YYU_RS00870 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YYU_RS00870 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YYU_RS00875 PF02899 Phage integrase, N-terminal SAM-like domain YYU_RS00875 PF00589 Phage integrase family YYU_RS00885 PF00586 AIR synthase related protein, N-terminal domain YYU_RS00885 PF02769 AIR synthase related protein, C-terminal domain YYU_RS00895 PF00586 AIR synthase related protein, N-terminal domain YYU_RS00895 PF02769 AIR synthase related protein, C-terminal domain YYU_RS00920 PF00586 AIR synthase related protein, N-terminal domain YYU_RS00920 PF02769 AIR synthase related protein, C-terminal domain YYU_RS00930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YYU_RS00935 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YYU_RS00935 PF02769 AIR synthase related protein, C-terminal domain YYU_RS00935 PF00586 AIR synthase related protein, N-terminal domain YYU_RS00955 PF06968 Biotin and Thiamin Synthesis associated domain YYU_RS00955 PF04055 Radical SAM superfamily YYU_RS00970 PF01551 Peptidase family M23 YYU_RS00970 PF01476 LysM domain YYU_RS00975 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded YYU_RS00980 PF01134 Glucose inhibited division protein A YYU_RS00980 PF13932 GidA associated domain YYU_RS00985 PF02769 AIR synthase related protein, C-terminal domain YYU_RS00985 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YYU_RS00985 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YYU_RS01010 PF00551 Formyl transferase YYU_RS01015 PF00883 Cytosol aminopeptidase family, catalytic domain YYU_RS01015 PF02789 Cytosol aminopeptidase family, N-terminal domain YYU_RS01020 PF00775 Dioxygenase YYU_RS01035 PF00004 ATPase family associated with various cellular activities (AAA) YYU_RS01035 PF07724 AAA domain (Cdc48 subfamily) YYU_RS01035 PF17871 AAA lid domain YYU_RS01035 PF02861 Clp amino terminal domain, pathogenicity island component YYU_RS01035 PF10431 C-terminal, D2-small domain, of ClpB protein YYU_RS01055 PF00118 TCP-1/cpn60 chaperonin family YYU_RS01060 PF00166 Chaperonin 10 Kd subunit YYU_RS01065 PF04002 RadC-like JAB domain YYU_RS01070 PF03099 Biotin/lipoate A/B protein ligase family YYU_RS01075 PF01979 Amidohydrolase family YYU_RS01080 PF04127 DNA / pantothenate metabolism flavoprotein YYU_RS01080 PF02441 Flavoprotein YYU_RS01085 PF00206 Lyase YYU_RS01085 PF10415 Fumarase C C-terminus YYU_RS01095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YYU_RS01095 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YYU_RS01095 PF02142 MGS-like domain YYU_RS01100 PF00809 Pterin binding enzyme YYU_RS01105 PF00664 ABC transporter transmembrane region YYU_RS01105 PF00005 ABC transporter YYU_RS01110 PF00107 Zinc-binding dehydrogenase YYU_RS01110 PF08240 Alcohol dehydrogenase GroES-like domain YYU_RS01115 PF13361 UvrD-like helicase C-terminal domain YYU_RS01115 PF12705 PD-(D/E)XK nuclease superfamily YYU_RS01115 PF00580 UvrD/REP helicase N-terminal domain YYU_RS01140 PF00762 Ferrochelatase YYU_RS01160 PF00456 Transketolase, thiamine diphosphate binding domain YYU_RS01160 PF02780 Transketolase, C-terminal domain YYU_RS01160 PF02779 Transketolase, pyrimidine binding domain YYU_RS01170 PF00216 Bacterial DNA-binding protein YYU_RS01175 PF01343 Peptidase family S49 YYU_RS01180 PF00575 S1 RNA binding domain YYU_RS01185 PF02224 Cytidylate kinase YYU_RS01190 PF00588 SpoU rRNA Methylase family YYU_RS01190 PF08032 RNA 2'-O ribose methyltransferase substrate binding YYU_RS01205 PF03144 Elongation factor Tu domain 2 YYU_RS01205 PF00009 Elongation factor Tu GTP binding domain YYU_RS01205 PF03143 Elongation factor Tu C-terminal domain YYU_RS01210 PF00338 Ribosomal protein S10p/S20e YYU_RS01215 PF00297 Ribosomal protein L3 YYU_RS01220 PF00573 Ribosomal protein L4/L1 family YYU_RS01225 PF00276 Ribosomal protein L23 YYU_RS01230 PF00181 Ribosomal Proteins L2, RNA binding domain YYU_RS01230 PF03947 Ribosomal Proteins L2, C-terminal domain YYU_RS01235 PF00203 Ribosomal protein S19 YYU_RS01240 PF00237 Ribosomal protein L22p/L17e YYU_RS01245 PF07650 KH domain YYU_RS01245 PF00189 Ribosomal protein S3, C-terminal domain YYU_RS01250 PF00252 Ribosomal protein L16p/L10e YYU_RS01255 PF00831 Ribosomal L29 protein YYU_RS01260 PF00366 Ribosomal protein S17 YYU_RS01265 PF00238 Ribosomal protein L14p/L23e YYU_RS01270 PF00467 KOW motif YYU_RS01270 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YYU_RS01275 PF00281 Ribosomal protein L5 YYU_RS01275 PF00673 ribosomal L5P family C-terminus YYU_RS01280 PF00253 Ribosomal protein S14p/S29e YYU_RS01285 PF00410 Ribosomal protein S8 YYU_RS01290 PF00347 Ribosomal protein L6 YYU_RS01295 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YYU_RS01300 PF03719 Ribosomal protein S5, C-terminal domain YYU_RS01300 PF00333 Ribosomal protein S5, N-terminal domain YYU_RS01305 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YYU_RS01310 PF00344 SecY translocase YYU_RS01315 PF05191 Adenylate kinase, active site lid YYU_RS01320 PF00416 Ribosomal protein S13/S18 YYU_RS01325 PF00411 Ribosomal protein S11 YYU_RS01330 PF01000 RNA polymerase Rpb3/RpoA insert domain YYU_RS01330 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YYU_RS01330 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YYU_RS01335 PF01196 Ribosomal protein L17 YYU_RS01340 PF03147 Ferredoxin-fold anticodon binding domain YYU_RS01340 PF03484 tRNA synthetase B5 domain YYU_RS01340 PF03483 B3/4 domain YYU_RS01340 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YYU_RS01340 PF01588 Putative tRNA binding domain YYU_RS01345 PF00753 Metallo-beta-lactamase superfamily YYU_RS01345 PF03772 Competence protein YYU_RS01345 PF13567 Domain of unknown function (DUF4131) YYU_RS01355 PF00825 Ribonuclease P YYU_RS01360 PF01040 UbiA prenyltransferase family YYU_RS01365 PF01613 Flavin reductase like domain YYU_RS01370 PF00005 ABC transporter YYU_RS01375 PF01702 Queuine tRNA-ribosyltransferase YYU_RS01380 PF01783 Ribosomal L32p protein family YYU_RS01385 PF02504 Fatty acid synthesis protein YYU_RS01390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YYU_RS01390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YYU_RS01400 PF14437 MafB19-like deaminase YYU_RS01410 PF00772 DnaB-like helicase N terminal domain YYU_RS01410 PF03796 DnaB-like helicase C terminal domain YYU_RS01415 PF01266 FAD dependent oxidoreductase YYU_RS01420 PF02779 Transketolase, pyrimidine binding domain YYU_RS01420 PF02780 Transketolase, C-terminal domain YYU_RS01420 PF00456 Transketolase, thiamine diphosphate binding domain YYU_RS01435 PF00348 Polyprenyl synthetase YYU_RS01445 PF03477 ATP cone domain YYU_RS01445 PF00317 Ribonucleotide reductase, all-alpha domain YYU_RS01445 PF02867 Ribonucleotide reductase, barrel domain YYU_RS01450 PF03652 Holliday junction resolvase YYU_RS01455 PF00709 Adenylosuccinate synthetase YYU_RS01460 PF00270 DEAD/DEAH box helicase YYU_RS01460 PF00271 Helicase conserved C-terminal domain YYU_RS01460 PF17764 3′ DNA-binding domain (3′BD) YYU_RS01460 PF18074 Primosomal protein N C-terminal domain YYU_RS01460 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YYU_RS01465 PF00691 OmpA family YYU_RS01475 PF02780 Transketolase, C-terminal domain YYU_RS01475 PF02779 Transketolase, pyrimidine binding domain YYU_RS01475 PF00456 Transketolase, thiamine diphosphate binding domain YYU_RS01485 PF03334 Na+/H+ antiporter subunit YYU_RS01495 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter YYU_RS01505 PF10150 Ribonuclease E/G family YYU_RS01505 PF00575 S1 RNA binding domain YYU_RS01505 PF12111 Polyribonucleotide phosphorylase C terminal YYU_RS01510 PF00012 Hsp70 protein YYU_RS01520 PF00361 Proton-conducting membrane transporter YYU_RS01525 PF02881 SRP54-type protein, helical bundle domain YYU_RS01525 PF00448 SRP54-type protein, GTPase domain YYU_RS01525 PF02978 Signal peptide binding domain YYU_RS01530 PF01926 50S ribosome-binding GTPase YYU_RS01530 PF07650 KH domain YYU_RS01565 PF18074 Primosomal protein N C-terminal domain YYU_RS01565 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YYU_RS01565 PF00271 Helicase conserved C-terminal domain YYU_RS01565 PF00270 DEAD/DEAH box helicase YYU_RS01565 PF17764 3′ DNA-binding domain (3′BD) YYU_RS01570 PF00830 Ribosomal L28 family YYU_RS01575 PF00849 RNA pseudouridylate synthase YYU_RS01585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YYU_RS01585 PF00364 Biotin-requiring enzyme YYU_RS01585 PF00289 Biotin carboxylase, N-terminal domain YYU_RS01585 PF02785 Biotin carboxylase C-terminal domain YYU_RS01585 PF18140 Propionyl-coenzyme A carboxylase BT domain YYU_RS01600 PF04055 Radical SAM superfamily YYU_RS01610 PF00528 Binding-protein-dependent transport system inner membrane component YYU_RS01615 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YYU_RS01615 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YYU_RS01625 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YYU_RS01635 PF04610 TrbL/VirB6 plasmid conjugal transfer protein YYU_RS01645 PF04610 TrbL/VirB6 plasmid conjugal transfer protein YYU_RS01655 PF00692 dUTPase YYU_RS01660 PF02401 LytB protein YYU_RS01670 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YYU_RS01670 PF00117 Glutamine amidotransferase class-I YYU_RS01710 PF06415 BPG-independent PGAM N-terminus (iPGM_N) YYU_RS01710 PF01676 Metalloenzyme superfamily YYU_RS01715 PF01926 50S ribosome-binding GTPase YYU_RS01715 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YYU_RS01725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYU_RS01725 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_RS01735 PF01176 Translation initiation factor 1A / IF-1 YYU_RS01740 PF02545 Maf-like protein YYU_RS01745 PF00318 Ribosomal protein S2 YYU_RS01750 PF00889 Elongation factor TS YYU_RS01755 PF00950 ABC 3 transport family YYU_RS01765 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal YYU_RS01765 PF00355 Rieske [2Fe-2S] domain YYU_RS01770 PF00033 Cytochrome b/b6/petB YYU_RS01770 PF00032 Cytochrome b(C-terminal)/b6/petD YYU_RS01775 PF02167 Cytochrome C1 family YYU_RS01810 PF00749 tRNA synthetases class I (E and Q), catalytic domain YYU_RS01820 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YYU_RS01820 PF06827 Zinc finger found in FPG and IleRS YYU_RS01820 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YYU_RS01825 PF13932 GidA associated domain YYU_RS01825 PF01134 Glucose inhibited division protein A YYU_RS01835 PF01039 Carboxyl transferase domain YYU_RS01840 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YYU_RS01845 PF00472 RF-1 domain YYU_RS01845 PF03462 PCRF domain YYU_RS01850 PF01926 50S ribosome-binding GTPase YYU_RS01855 PF00696 Amino acid kinase family YYU_RS01860 PF01218 Coproporphyrinogen III oxidase YYU_RS01875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YYU_RS01875 PF02403 Seryl-tRNA synthetase N-terminal domain YYU_RS01880 PF02646 RmuC family YYU_RS01905 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YYU_RS01905 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YYU_RS01905 PF10531 SLBB domain YYU_RS01915 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YYU_RS01920 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YYU_RS01925 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YYU_RS01925 PF00361 Proton-conducting membrane transporter YYU_RS01930 PF00361 Proton-conducting membrane transporter YYU_RS01930 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus YYU_RS01935 PF00361 Proton-conducting membrane transporter YYU_RS01940 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YYU_RS01940 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YYU_RS01940 PF13288 DXP reductoisomerase C-terminal domain YYU_RS01950 PF04551 GcpE protein YYU_RS01955 PF00902 Sec-independent protein translocase protein (TatC) YYU_RS01960 PF00873 AcrB/AcrD/AcrF family YYU_RS01965 PF13184 NusA-like KH domain YYU_RS01965 PF08529 NusA N-terminal domain YYU_RS01965 PF00575 S1 RNA binding domain YYU_RS01970 PF04760 Translation initiation factor IF-2, N-terminal region YYU_RS01970 PF11987 Translation-initiation factor 2 YYU_RS01970 PF00009 Elongation factor Tu GTP binding domain YYU_RS01975 PF02033 Ribosome-binding factor A YYU_RS01980 PF03144 Elongation factor Tu domain 2 YYU_RS01980 PF03764 Elongation factor G, domain IV YYU_RS01980 PF00009 Elongation factor Tu GTP binding domain YYU_RS01980 PF00679 Elongation factor G C-terminus YYU_RS01980 PF14492 Elongation Factor G, domain II YYU_RS01985 PF03741 Integral membrane protein TerC family YYU_RS01985 PF03471 Transporter associated domain YYU_RS01990 PF17871 AAA lid domain YYU_RS01990 PF10431 C-terminal, D2-small domain, of ClpB protein YYU_RS01990 PF07724 AAA domain (Cdc48 subfamily) YYU_RS01990 PF02861 Clp amino terminal domain, pathogenicity island component YYU_RS01990 PF00004 ATPase family associated with various cellular activities (AAA) YYU_RS01995 PF03144 Elongation factor Tu domain 2 YYU_RS01995 PF00679 Elongation factor G C-terminus YYU_RS01995 PF00009 Elongation factor Tu GTP binding domain YYU_RS02045 PF00436 Single-strand binding protein family YYU_RS02050 PF00472 RF-1 domain YYU_RS02050 PF03462 PCRF domain YYU_RS02060 PF02637 GatB domain YYU_RS02060 PF02934 GatB/GatE catalytic domain YYU_RS02080 PF08299 Bacterial dnaA protein helix-turn-helix YYU_RS02080 PF00308 Bacterial dnaA protein YYU_RS02080 PF11638 DnaA N-terminal domain YYU_RS02095 PF00472 RF-1 domain YYU_RS02095 PF03462 PCRF domain YYU_RS02100 PF01709 Transcriptional regulator YYU_RS02110 PF00202 Aminotransferase class-III YYU_RS02110 PF06968 Biotin and Thiamin Synthesis associated domain YYU_RS02110 PF04055 Radical SAM superfamily YYU_RS02140 PF00923 Transaldolase/Fructose-6-phosphate aldolase YYU_RS02150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YYU_RS02150 PF02874 ATP synthase alpha/beta family, beta-barrel domain YYU_RS02170 PF01728 FtsJ-like methyltransferase YYU_RS02180 PF01416 tRNA pseudouridine synthase YYU_RS02185 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YYU_RS02185 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YYU_RS02190 PF01728 FtsJ-like methyltransferase YYU_RS02205 PF00444 Ribosomal protein L36 YYU_RS02220 PF01192 RNA polymerase Rpb6 YYU_RS02235 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YYU_RS02240 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YYU_RS02245 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YYU_RS02250 PF01975 Survival protein SurE YYU_RS02255 PF03100 CcmE YYU_RS02260 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YYU_RS02265 PF01026 TatD related DNase YYU_RS02275 PF09334 tRNA synthetases class I (M) YYU_RS02275 PF08264 Anticodon-binding domain of tRNA YYU_RS02275 PF00133 tRNA synthetases class I (I, L, M and V) YYU_RS02275 PF13603 Leucyl-tRNA synthetase, Domain 2 YYU_RS02290 PF17760 UvrA interaction domain YYU_RS02290 PF17755 UvrA DNA-binding domain YYU_RS02300 PF00885 6,7-dimethyl-8-ribityllumazine synthase YYU_RS02305 PF14849 YidC periplasmic domain YYU_RS02305 PF02096 60Kd inner membrane protein YYU_RS02310 PF14849 YidC periplasmic domain YYU_RS02310 PF02096 60Kd inner membrane protein YYU_RS02315 PF00384 Molybdopterin oxidoreductase YYU_RS02315 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal YYU_RS02315 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YYU_RS02320 PF01066 CDP-alcohol phosphatidyltransferase YYU_RS02325 PF02666 Phosphatidylserine decarboxylase YYU_RS02335 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_RS02345 PF08207 Elongation factor P (EF-P) KOW-like domain YYU_RS02345 PF01132 Elongation factor P (EF-P) OB domain YYU_RS02345 PF09285 Elongation factor P, C-terminal YYU_RS02350 PF00459 Inositol monophosphatase family YYU_RS02355 PF00849 RNA pseudouridylate synthase YYU_RS02355 PF01479 S4 domain YYU_RS02360 PF00072 Response regulator receiver domain YYU_RS02360 PF00990 Diguanylate cyclase, GGDEF domain YYU_RS02370 PF05088 Bacterial NAD-glutamate dehydrogenase YYU_RS02380 PF06055 Exopolysaccharide synthesis, ExoD YYU_RS02385 PF09190 DALR domain YYU_RS02385 PF01406 tRNA synthetases class I (C) catalytic domain YYU_RS02395 PF00268 Ribonucleotide reductase, small chain YYU_RS02420 PF01807 CHC2 zinc finger YYU_RS02420 PF08275 DNA primase catalytic core, N-terminal domain YYU_RS02420 PF13662 Toprim domain YYU_RS02425 PF01624 MutS domain I YYU_RS02425 PF00488 MutS domain V YYU_RS02425 PF05192 MutS domain III YYU_RS02425 PF05190 MutS family domain IV YYU_RS02425 PF05188 MutS domain II YYU_RS02430 PF08544 GHMP kinases C terminal YYU_RS02430 PF00288 GHMP kinases N terminal domain YYU_RS02435 PF01207 Dihydrouridine synthase (Dus) YYU_RS02440 PF04545 Sigma-70, region 4 YYU_RS02440 PF04546 Sigma-70, non-essential region YYU_RS02440 PF03979 Sigma-70 factor, region 1.1 YYU_RS02440 PF00140 Sigma-70 factor, region 1.2 YYU_RS02440 PF04542 Sigma-70 region 2 YYU_RS02440 PF04539 Sigma-70 region 3 YYU_RS02455 PF03091 CutA1 divalent ion tolerance protein YYU_RS02460 PF13188 PAS domain YYU_RS02460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_RS02460 PF08448 PAS fold YYU_RS02460 PF00072 Response regulator receiver domain YYU_RS02460 PF00512 His Kinase A (phospho-acceptor) domain YYU_RS02480 PF01964 Radical SAM ThiC family YYU_RS02480 PF13667 ThiC-associated domain YYU_RS02485 PF01256 Carbohydrate kinase YYU_RS02485 PF03853 YjeF-related protein N-terminus YYU_RS02500 PF01751 Toprim domain YYU_RS02500 PF01396 Topoisomerase DNA binding C4 zinc finger YYU_RS02500 PF01131 DNA topoisomerase YYU_RS02500 PF13368 Topoisomerase C-terminal repeat YYU_RS02505 PF13667 ThiC-associated domain YYU_RS02505 PF01964 Radical SAM ThiC family YYU_RS02530 PF01921 tRNA synthetases class I (K) YYU_RS02545 PF00814 Glycoprotease family YYU_RS02590 PF00398 Ribosomal RNA adenine dimethylase YYU_RS02600 PF00121 Triosephosphate isomerase YYU_RS02605 PF16868 NMT1-like family YYU_RS02610 PF00814 Glycoprotease family YYU_RS02625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YYU_RS02625 PF00056 lactate/malate dehydrogenase, NAD binding domain YYU_RS02675 PF02502 Ribose/Galactose Isomerase YYU_RS02690 PF01648 4'-phosphopantetheinyl transferase superfamily YYU_RS02695 PF03129 Anticodon binding domain YYU_RS02695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YYU_RS02710 PF01467 Cytidylyltransferase-like YYU_RS02715 PF01467 Cytidylyltransferase-like YYU_RS02750 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_RS02755 PF10417 C-terminal domain of 1-Cys peroxiredoxin YYU_RS02755 PF00578 AhpC/TSA family YYU_RS02760 PF00155 Aminotransferase class I and II YYU_RS02785 PF01619 Proline dehydrogenase YYU_RS02785 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YYU_RS02785 PF14850 DNA-binding domain of Proline dehydrogenase YYU_RS02785 PF00171 Aldehyde dehydrogenase family YYU_RS02790 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YYU_RS02795 PF00266 Aminotransferase class-V YYU_RS02800 PF00266 Aminotransferase class-V YYU_RS02805 PF01592 NifU-like N terminal domain YYU_RS02810 PF01521 Iron-sulphur cluster biosynthesis YYU_RS02815 PF00226 DnaJ domain YYU_RS02815 PF07743 HSCB C-terminal oligomerisation domain YYU_RS02820 PF00012 Hsp70 protein YYU_RS02825 PF00111 2Fe-2S iron-sulfur cluster binding domain YYU_RS02865 PF01795 MraW methylase family YYU_RS02880 PF01018 GTP1/OBG YYU_RS02880 PF01926 50S ribosome-binding GTPase YYU_RS02885 PF00113 Enolase, C-terminal TIM barrel domain YYU_RS02885 PF03952 Enolase, N-terminal domain YYU_RS02895 PF00829 Ribosomal prokaryotic L21 protein YYU_RS02900 PF01016 Ribosomal L27 protein YYU_RS02910 PF03485 Arginyl tRNA synthetase N terminal domain YYU_RS02910 PF05746 DALR anticodon binding domain YYU_RS02910 PF00750 tRNA synthetases class I (R) YYU_RS02915 PF01523 Putative modulator of DNA gyrase YYU_RS02920 PF01227 GTP cyclohydrolase I YYU_RS02925 PF00231 ATP synthase YYU_RS02940 PF00146 NADH dehydrogenase YYU_RS02945 PF00384 Molybdopterin oxidoreductase YYU_RS02945 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal YYU_RS02945 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YYU_RS02955 PF01751 Toprim domain YYU_RS02955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_RS02955 PF00986 DNA gyrase B subunit, carboxyl terminus YYU_RS02955 PF00204 DNA gyrase B YYU_RS03000 PF00929 Exonuclease YYU_RS03010 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YYU_RS03015 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_RS03020 PF02769 AIR synthase related protein, C-terminal domain YYU_RS03020 PF00586 AIR synthase related protein, N-terminal domain YYU_RS03025 PF11967 Recombination protein O N terminal YYU_RS03025 PF02565 Recombination protein O C terminal YYU_RS03055 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YYU_RS03055 PF01565 FAD binding domain YYU_RS03060 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YYU_RS03060 PF03900 Porphobilinogen deaminase, C-terminal domain YYU_RS03065 PF02875 Mur ligase family, glutamate ligase domain YYU_RS03065 PF08245 Mur ligase middle domain YYU_RS03070 PF01425 Amidase YYU_RS03075 PF02441 Flavoprotein YYU_RS03085 PF13335 Magnesium chelatase, subunit ChlI C-terminal YYU_RS03085 PF01078 Magnesium chelatase, subunit ChlI YYU_RS03100 PF04542 Sigma-70 region 2 YYU_RS03100 PF04545 Sigma-70, region 4 YYU_RS03100 PF00140 Sigma-70 factor, region 1.2 YYU_RS03110 PF00679 Elongation factor G C-terminus YYU_RS03110 PF00009 Elongation factor Tu GTP binding domain YYU_RS03110 PF03144 Elongation factor Tu domain 2 YYU_RS03110 PF06421 GTP-binding protein LepA C-terminus YYU_RS03120 PF01138 3' exoribonuclease family, domain 1 YYU_RS03120 PF00575 S1 RNA binding domain YYU_RS03120 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YYU_RS03120 PF00013 KH domain YYU_RS03120 PF03725 3' exoribonuclease family, domain 2 YYU_RS03125 PF00312 Ribosomal protein S15 YYU_RS03130 PF01509 TruB family pseudouridylate synthase (N terminal domain) YYU_RS03130 PF16198 tRNA pseudouridylate synthase B C-terminal domain YYU_RS03165 PF01121 Dephospho-CoA kinase YYU_RS03170 PF03481 Putative GTP-binding controlling metal-binding YYU_RS03170 PF01300 Telomere recombination YYU_RS03175 PF09115 DNA polymerase III, delta subunit, C terminal YYU_RS03185 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YYU_RS03190 PF01467 Cytidylyltransferase-like YYU_RS03205 PF04452 RNA methyltransferase YYU_RS03210 PF00578 AhpC/TSA family YYU_RS03215 PF08264 Anticodon-binding domain of tRNA YYU_RS03215 PF00133 tRNA synthetases class I (I, L, M and V) YYU_RS03225 PF12838 4Fe-4S dicluster domain YYU_RS03230 PF10502 Signal peptidase, peptidase S26 YYU_RS03235 PF01521 Iron-sulphur cluster biosynthesis YYU_RS03265 PF00231 ATP synthase YYU_RS03390 PF00083 Sugar (and other) transporter YYU_RS03390 PF08946 Osmosensory transporter coiled coil YYU_RS03400 PF00490 Delta-aminolevulinic acid dehydratase YYU_RS03420 PF05192 MutS domain III YYU_RS03420 PF05190 MutS family domain IV YYU_RS03420 PF05188 MutS domain II YYU_RS03420 PF00488 MutS domain V YYU_RS03420 PF01624 MutS domain I YYU_RS03430 PF01230 HIT domain YYU_RS03440 PF16870 2-oxoglutarate dehydrogenase C-terminal YYU_RS03440 PF00676 Dehydrogenase E1 component YYU_RS03440 PF16078 2-oxoglutarate dehydrogenase N-terminus YYU_RS03440 PF02779 Transketolase, pyrimidine binding domain YYU_RS03450 PF10397 Adenylosuccinate lyase C-terminus YYU_RS03450 PF00206 Lyase YYU_RS03470 PF08279 HTH domain YYU_RS03470 PF02237 Biotin protein ligase C terminal domain YYU_RS03470 PF03099 Biotin/lipoate A/B protein ligase family YYU_RS03490 PF04055 Radical SAM superfamily YYU_RS03490 PF00919 Uncharacterized protein family UPF0004 YYU_RS03515 PF01541 GIY-YIG catalytic domain YYU_RS03515 PF08459 UvrC Helix-hairpin-helix N-terminal YYU_RS03520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_RS03520 PF00183 Hsp90 protein YYU_RS03540 PF00730 HhH-GPD superfamily base excision DNA repair protein YYU_RS03540 PF00633 Helix-hairpin-helix motif YYU_RS03545 PF00521 DNA gyrase/topoisomerase IV, subunit A YYU_RS03545 PF03989 DNA gyrase C-terminal domain, beta-propeller YYU_RS03560 PF00580 UvrD/REP helicase N-terminal domain YYU_RS03560 PF13361 UvrD-like helicase C-terminal domain YYU_RS03595 PF03232 Ubiquinone biosynthesis protein COQ7 YYU_RS03655 PF00471 Ribosomal protein L33 YYU_RS03670 PF00550 Phosphopantetheine attachment site YYU_RS03675 PF00109 Beta-ketoacyl synthase, N-terminal domain YYU_RS03675 PF02801 Beta-ketoacyl synthase, C-terminal domain YYU_RS03680 PF02481 DNA recombination-mediator protein A YYU_RS03680 PF17782 DprA winged helix domain YYU_RS03705 PF01617 Surface antigen YYU_RS03710 PF01119 DNA mismatch repair protein, C-terminal domain YYU_RS03710 PF08676 MutL C terminal dimerisation domain YYU_RS03715 PF01618 MotA/TolQ/ExbB proton channel family YYU_RS03730 PF00989 PAS fold YYU_RS03730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYU_RS03730 PF00512 His Kinase A (phospho-acceptor) domain YYU_RS03735 PF00202 Aminotransferase class-III YYU_RS03765 PF00571 CBS domain YYU_RS03765 PF03471 Transporter associated domain YYU_RS03765 PF01595 Cyclin M transmembrane N-terminal domain YYU_RS03770 PF02581 Thiamine monophosphate synthase YYU_RS03775 PF03618 Kinase/pyrophosphorylase YYU_RS03780 PF17773 UPF0176 acylphosphatase like domain YYU_RS03780 PF00581 Rhodanese-like domain YYU_RS03795 PF00551 Formyl transferase YYU_RS03795 PF02911 Formyl transferase, C-terminal domain YYU_RS03805 PF00004 ATPase family associated with various cellular activities (AAA) YYU_RS03805 PF05362 Lon protease (S16) C-terminal proteolytic domain YYU_RS03805 PF02190 ATP-dependent protease La (LON) substrate-binding domain YYU_RS03810 PF10431 C-terminal, D2-small domain, of ClpB protein YYU_RS03810 PF06689 ClpX C4-type zinc finger YYU_RS03810 PF07724 AAA domain (Cdc48 subfamily) YYU_RS03815 PF00574 Clp protease YYU_RS03820 PF05697 Bacterial trigger factor protein (TF) YYU_RS03820 PF05698 Bacterial trigger factor protein (TF) C-terminus YYU_RS03820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YYU_RS03855 PF00155 Aminotransferase class I and II YYU_RS03870 PF01297 Zinc-uptake complex component A periplasmic YYU_RS03875 PF00005 ABC transporter YYU_RS03880 PF03109 ABC1 family YYU_RS03890 PF08402 TOBE domain YYU_RS03890 PF00005 ABC transporter YYU_RS03895 PF02416 mttA/Hcf106 family YYU_RS03900 PF13662 Toprim domain YYU_RS03900 PF02132 RecR protein YYU_RS03905 PF01479 S4 domain YYU_RS03905 PF00163 Ribosomal protein S4/S9 N-terminal domain YYU_RS03915 PF02581 Thiamine monophosphate synthase YYU_RS03915 PF08543 Phosphomethylpyrimidine kinase YYU_RS03925 PF01594 AI-2E family transporter YYU_RS03940 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YYU_RS03945 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit YYU_RS03955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YYU_RS03960 PF07733 Bacterial DNA polymerase III alpha NTPase domain YYU_RS03960 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YYU_RS03960 PF14579 Helix-hairpin-helix motif YYU_RS03960 PF02811 PHP domain YYU_RS03975 PF01243 Pyridoxamine 5'-phosphate oxidase YYU_RS03975 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YYU_RS03980 PF02230 Phospholipase/Carboxylesterase YYU_RS03985 PF01327 Polypeptide deformylase YYU_RS03990 PF01180 Dihydroorotate dehydrogenase YYU_RS03995 PF03309 Type III pantothenate kinase YYU_RS04005 PF00155 Aminotransferase class I and II YYU_RS04035 PF01351 Ribonuclease HII YYU_RS04040 PF04998 RNA polymerase Rpb1, domain 5 YYU_RS04040 PF04997 RNA polymerase Rpb1, domain 1 YYU_RS04040 PF00623 RNA polymerase Rpb1, domain 2 YYU_RS04040 PF04983 RNA polymerase Rpb1, domain 3 YYU_RS04040 PF05000 RNA polymerase Rpb1, domain 4 YYU_RS04045 PF04565 RNA polymerase Rpb2, domain 3 YYU_RS04045 PF10385 RNA polymerase beta subunit external 1 domain YYU_RS04045 PF04563 RNA polymerase beta subunit YYU_RS04045 PF04561 RNA polymerase Rpb2, domain 2 YYU_RS04045 PF04560 RNA polymerase Rpb2, domain 7 YYU_RS04045 PF00562 RNA polymerase Rpb2, domain 6 YYU_RS04050 PF00542 Ribosomal protein L7/L12 C-terminal domain YYU_RS04055 PF00466 Ribosomal protein L10 YYU_RS04060 PF00687 Ribosomal protein L1p/L10e family YYU_RS04065 PF03946 Ribosomal protein L11, N-terminal domain YYU_RS04065 PF00298 Ribosomal protein L11, RNA binding domain YYU_RS04070 PF02357 Transcription termination factor nusG YYU_RS04070 PF00467 KOW motif YYU_RS04085 PF03144 Elongation factor Tu domain 2 YYU_RS04085 PF00009 Elongation factor Tu GTP binding domain YYU_RS04085 PF03143 Elongation factor Tu C-terminal domain YYU_RS04090 PF03764 Elongation factor G, domain IV YYU_RS04090 PF03144 Elongation factor Tu domain 2 YYU_RS04090 PF14492 Elongation Factor G, domain II YYU_RS04090 PF00679 Elongation factor G C-terminus YYU_RS04090 PF00009 Elongation factor Tu GTP binding domain YYU_RS04095 PF00177 Ribosomal protein S7p/S5e YYU_RS04100 PF00164 Ribosomal protein S12/S23 YYU_RS04105 PF17770 Ribonuclease J C-terminal domain YYU_RS04105 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain YYU_RS04105 PF12706 Beta-lactamase superfamily domain YYU_RS04110 PF04052 TolB amino-terminal domain YYU_RS04110 PF07676 WD40-like Beta Propeller Repeat YYU_RS04130 PF00529 HlyD membrane-fusion protein of T1SS YYU_RS04135 PF00528 Binding-protein-dependent transport system inner membrane component YYU_RS04140 PF03060 Nitronate monooxygenase YYU_RS04145 PF02630 SCO1/SenC YYU_RS04155 PF01165 Ribosomal protein S21 YYU_RS04160 PF00549 CoA-ligase YYU_RS04160 PF08442 ATP-grasp domain YYU_RS04165 PF00549 CoA-ligase YYU_RS04165 PF02629 CoA binding domain YYU_RS04170 PF01171 PP-loop family YYU_RS04175 PF00814 Glycoprotease family YYU_RS04180 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YYU_RS04180 PF01411 tRNA synthetases class II (A) YYU_RS04185 PF00528 Binding-protein-dependent transport system inner membrane component YYU_RS04230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYU_RS04230 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYU_RS04235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YYU_RS04235 PF07497 Rho termination factor, RNA-binding domain YYU_RS04235 PF07498 Rho termination factor, N-terminal domain YYU_RS04240 PF00227 Proteasome subunit YYU_RS04245 PF10431 C-terminal, D2-small domain, of ClpB protein YYU_RS04245 PF00004 ATPase family associated with various cellular activities (AAA) YYU_RS04245 PF07724 AAA domain (Cdc48 subfamily) YYU_RS04250 PF01209 ubiE/COQ5 methyltransferase family YYU_RS04270 PF09334 tRNA synthetases class I (M) YYU_RS04270 PF08264 Anticodon-binding domain of tRNA YYU_RS04290 PF02790 Cytochrome C oxidase subunit II, transmembrane domain YYU_RS04290 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YYU_RS04295 PF00115 Cytochrome C and Quinol oxidase polypeptide I YYU_RS04300 PF01040 UbiA prenyltransferase family YYU_RS04305 PF13525 Outer membrane lipoprotein YYU_RS04310 PF02844 Phosphoribosylglycinamide synthetase, N domain YYU_RS04310 PF02843 Phosphoribosylglycinamide synthetase, C domain YYU_RS04310 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YYU_RS04315 PF02699 Preprotein translocase subunit YYU_RS04320 PF01171 PP-loop family YYU_RS04325 PF00814 Glycoprotease family YYU_RS04330 PF01411 tRNA synthetases class II (A) YYU_RS04330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YYU_RS04335 PF02768 DNA polymerase III beta subunit, C-terminal domain YYU_RS04335 PF00712 DNA polymerase III beta subunit, N-terminal domain YYU_RS04335 PF02767 DNA polymerase III beta subunit, central domain YYU_RS04345 PF00486 Transcriptional regulatory protein, C terminal YYU_RS04345 PF00072 Response regulator receiver domain YYU_RS04355 PF00719 Inorganic pyrophosphatase YYU_RS04375 PF00380 Ribosomal protein S9/S16 YYU_RS04380 PF00572 Ribosomal protein L13 YYU_RS04395 PF10609 NUBPL iron-transfer P-loop NTPase YYU_RS04400 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YYU_RS04400 PF14572 Phosphoribosyl synthetase-associated domain YYU_RS04405 PF02686 Glu-tRNAGln amidotransferase C subunit YYU_RS04425 PF00330 Aconitase family (aconitate hydratase) YYU_RS04425 PF00694 Aconitase C-terminal domain YYU_RS04435 PF02222 ATP-grasp domain YYU_RS04435 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YYU_RS04440 PF04379 ApaG domain YYU_RS04550 PF01145 SPFH domain / Band 7 family YYU_RS04555 PF01145 SPFH domain / Band 7 family YYU_RS04560 PF13180 PDZ domain YYU_RS04565 PF00035 Double-stranded RNA binding motif YYU_RS04565 PF14622 Ribonuclease-III-like YYU_RS04570 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 YYU_RS04615 PF05193 Peptidase M16 inactive domain YYU_RS04615 PF00675 Insulinase (Peptidase family M16) YYU_RS04620 PF01252 Signal peptidase (SPase) II YYU_RS04625 PF01687 Riboflavin kinase YYU_RS04625 PF06574 FAD synthetase YYU_RS04630 PF00462 Glutaredoxin YYU_RS04640 PF02491 SHS2 domain inserted in FTSA YYU_RS04645 PF10141 Single-strand DNA-specific exonuclease, C terminal domain YYU_RS04645 PF17768 RecJ OB domain YYU_RS04645 PF02272 DHHA1 domain YYU_RS04645 PF01368 DHH family YYU_RS04650 PF18324 Hypothetical protein TT1725 YYU_RS04650 PF00180 Isocitrate/isopropylmalate dehydrogenase YYU_RS04675 PF02104 SURF1 family YYU_RS04680 PF00156 Phosphoribosyl transferase domain YYU_RS04685 PF00899 ThiF family YYU_RS04700 PF01043 SecA preprotein cross-linking domain YYU_RS04700 PF07516 SecA Wing and Scaffold domain YYU_RS04700 PF02810 SEC-C motif YYU_RS04700 PF07517 SecA DEAD-like domain YYU_RS04705 PF17862 AAA+ lid domain YYU_RS04705 PF06480 FtsH Extracellular YYU_RS04705 PF01434 Peptidase family M41 YYU_RS04705 PF00004 ATPase family associated with various cellular activities (AAA) YYU_RS04720 PF02386 Cation transport protein YYU_RS04725 PF02491 SHS2 domain inserted in FTSA YYU_RS04750 PF00137 ATP synthase subunit C YYU_RS04755 PF00119 ATP synthase A chain YYU_RS04760 PF13685 Iron-containing alcohol dehydrogenase YYU_RS04775 PF00132 Bacterial transferase hexapeptide (six repeats) YYU_RS04780 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YYU_RS04780 PF02817 e3 binding domain YYU_RS04780 PF00364 Biotin-requiring enzyme YYU_RS04785 PF00557 Metallopeptidase family M24 YYU_RS04790 PF13847 Methyltransferase domain YYU_RS04790 PF17827 PrmC N-terminal domain YYU_RS04805 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YYU_RS04805 PF01578 Cytochrome C assembly protein YYU_RS04810 PF00115 Cytochrome C and Quinol oxidase polypeptide I YYU_RS04815 PF01066 CDP-alcohol phosphatidyltransferase YYU_RS04820 PF02142 MGS-like domain YYU_RS04820 PF01808 AICARFT/IMPCHase bienzyme YYU_RS04825 PF07977 FabA-like domain YYU_RS04835 PF07244 Surface antigen variable number repeat YYU_RS04835 PF01103 Surface antigen YYU_RS04840 PF17820 PDZ domain YYU_RS04840 PF02163 Peptidase family M50 YYU_RS04855 PF07943 Penicillin-binding protein 5, C-terminal domain YYU_RS04855 PF00768 D-alanyl-D-alanine carboxypeptidase YYU_RS04865 PF01743 Poly A polymerase head domain YYU_RS04865 PF12627 Probable RNA and SrmB- binding site of polymerase A YYU_RS04865 PF13735 tRNA nucleotidyltransferase domain 2 putative YYU_RS04870 PF00334 Nucleoside diphosphate kinase YYU_RS04875 PF01381 Helix-turn-helix YYU_RS04895 PF00154 recA bacterial DNA recombination protein YYU_RS04900 PF00133 tRNA synthetases class I (I, L, M and V) YYU_RS04900 PF08264 Anticodon-binding domain of tRNA YYU_RS04915 PF00448 SRP54-type protein, GTPase domain YYU_RS04915 PF02881 SRP54-type protein, helical bundle domain YYU_RS04940 PF00285 Citrate synthase, C-terminal domain YYU_RS04945 PF00117 Glutamine amidotransferase class-I YYU_RS04945 PF00958 GMP synthase C terminal domain YYU_RS04965 PF01617 Surface antigen YYU_RS04985 PF00155 Aminotransferase class I and II YYU_RS04990 PF00579 tRNA synthetases class I (W and Y) YYU_RS05000 PF00120 Glutamine synthetase, catalytic domain YYU_RS05000 PF03951 Glutamine synthetase, beta-Grasp domain YYU_RS05005 PF00348 Polyprenyl synthetase YYU_RS05040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YYU_RS05040 PF00364 Biotin-requiring enzyme YYU_RS05040 PF02817 e3 binding domain YYU_RS05045 PF01791 DeoC/LacD family aldolase YYU_RS05060 PF05198 Translation initiation factor IF-3, N-terminal domain YYU_RS05060 PF00707 Translation initiation factor IF-3, C-terminal domain YYU_RS05065 PF03129 Anticodon binding domain YYU_RS05065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YYU_RS05065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YYU_RS05070 PF18146 Damage-inducible protein CinA KH domain YYU_RS05070 PF00994 Probable molybdopterin binding domain YYU_RS05070 PF02464 Competence-damaged protein YYU_RS05075 PF01245 Ribosomal protein L19 YYU_RS05080 PF01746 tRNA (Guanine-1)-methyltransferase YYU_RS05085 PF01782 RimM N-terminal domain YYU_RS05100 PF01578 Cytochrome C assembly protein YYU_RS05100 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal YYU_RS05120 PF02542 YgbB family YYU_RS05125 PF02542 YgbB family YYU_RS05125 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YYU_RS05135 PF00731 AIR carboxylase YYU_RS05145 PF00216 Bacterial DNA-binding protein YYU_RS05155 PF01926 50S ribosome-binding GTPase YYU_RS05155 PF06071 Protein of unknown function (DUF933) YYU_RS05170 PF01926 50S ribosome-binding GTPase YYU_RS05170 PF12631 MnmE helical domain YYU_RS05170 PF10396 GTP-binding protein TrmE N-terminus YYU_RS05175 PF02130 Uncharacterized protein family UPF0054 YYU_RS05185 PF00091 Tubulin/FtsZ family, GTPase domain YYU_RS05185 PF12327 FtsZ family, C-terminal domain YYU_RS05195 PF02075 Crossover junction endodeoxyribonuclease RuvC YYU_RS05205 PF02441 Flavoprotein YYU_RS05205 PF04127 DNA / pantothenate metabolism flavoprotein YYU_RS05210 PF00270 DEAD/DEAH box helicase YYU_RS05210 PF00271 Helicase conserved C-terminal domain YYU_RS05210 PF17191 RecG wedge domain YYU_RS05215 PF01370 NAD dependent epimerase/dehydratase family YYU_RS05220 PF00156 Phosphoribosyl transferase domain YYU_RS05220 PF13537 Glutamine amidotransferase domain YYU_RS05225 PF01195 Peptidyl-tRNA hydrolase YYU_RS05230 PF01386 Ribosomal L25p family YYU_RS05230 PF14693 Ribosomal protein TL5, C-terminal domain YYU_RS05235 PF00156 Phosphoribosyl transferase domain YYU_RS05240 PF02254 TrkA-N domain YYU_RS05240 PF00999 Sodium/hydrogen exchanger family YYU_RS05250 PF03653 Uncharacterised protein family (UPF0093) YYU_RS05255 PF02779 Transketolase, pyrimidine binding domain YYU_RS05255 PF02780 Transketolase, C-terminal domain YYU_RS05270 PF01523 Putative modulator of DNA gyrase YYU_RS05290 PF00925 GTP cyclohydrolase II YYU_RS05310 PF00925 GTP cyclohydrolase II YYU_RS05320 PF00162 Phosphoglycerate kinase YYU_RS05325 PF02601 Exonuclease VII, large subunit YYU_RS05325 PF13742 OB-fold nucleic acid binding domain YYU_RS05345 PF02355 Protein export membrane protein YYU_RS05345 PF07549 SecD/SecF GG Motif YYU_RS05350 PF02021 Uncharacterised protein family UPF0102 YYU_RS05365 PF01668 SmpB protein YYU_RS05370 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YYU_RS05370 PF00925 GTP cyclohydrolase II YYU_RS05375 PF03449 Transcription elongation factor, N-terminal YYU_RS05375 PF01272 Transcription elongation factor, GreA/GreB, C-term YYU_RS05380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YYU_RS05380 PF02874 ATP synthase alpha/beta family, beta-barrel domain YYU_RS05380 PF00306 ATP synthase alpha/beta chain, C terminal domain YYU_RS05385 PF00213 ATP synthase delta (OSCP) subunit YYU_RS05405 PF12704 MacB-like periplasmic core domain YYU_RS05405 PF02687 FtsX-like permease family YYU_RS05420 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YYU_RS05425 PF01027 Inhibitor of apoptosis-promoting Bax1 YYU_RS05430 PF02774 Semialdehyde dehydrogenase, dimerisation domain YYU_RS05430 PF01118 Semialdehyde dehydrogenase, NAD binding domain YYU_RS05440 PF12169 DNA polymerase III subunits gamma and tau domain III YYU_RS05445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YYU_RS05445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YYU_RS05465 PF00154 recA bacterial DNA recombination protein YYU_RS05490 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YYU_RS05500 PF02355 Protein export membrane protein YYU_RS05505 PF00271 Helicase conserved C-terminal domain YYU_RS05505 PF04851 Type III restriction enzyme, res subunit YYU_RS05505 PF02151 UvrB/uvrC motif YYU_RS05505 PF12344 Ultra-violet resistance protein B YYU_RS05505 PF17757 UvrB interaction domain YYU_RS05525 PF01327 Polypeptide deformylase YYU_RS05530 PF01553 Acyltransferase YYU_RS05535 PF01649 Ribosomal protein S20 YYU_RS05540 PF01327 Polypeptide deformylase YYU_RS05550 PF01790 Prolipoprotein diacylglyceryl transferase YYU_RS05555 PF03023 Lipid II flippase MurJ YYU_RS05635 PF01545 Cation efflux family YYU_RS05650 PF01258 Prokaryotic dksA/traR C4-type zinc finger YYU_RS05665 PF02534 Type IV secretory system Conjugative DNA transfer YYU_RS05670 PF00437 Type II/IV secretion system protein YYU_RS05675 PF03743 Bacterial conjugation TrbI-like protein YYU_RS05695 PF02463 RecF/RecN/SMC N terminal domain YYU_RS05735 PF04610 TrbL/VirB6 plasmid conjugal transfer protein YYU_RS05755 PF01029 NusB family YYU_RS05785 PF01467 Cytidylyltransferase-like YYU_RS05790 PF01467 Cytidylyltransferase-like YYU_RS05805 PF01227 GTP cyclohydrolase I YYU_RS05810 PF00795 Carbon-nitrogen hydrolase YYU_RS05810 PF02540 NAD synthase YYU_RS05825 PF09397 Ftsk gamma domain YYU_RS05825 PF17854 FtsK alpha domain YYU_RS05825 PF01580 FtsK/SpoIIIE family YYU_RS05825 PF13491 4TM region of DNA translocase FtsK/SpoIIIE