locus-tag class description WSQ_RS00005 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WSQ_RS00005 PF00476 DNA polymerase family A WSQ_RS00005 PF01367 5'-3' exonuclease, C-terminal SAM fold WSQ_RS00010 PF00834 Ribulose-phosphate 3 epimerase family WSQ_RS00015 PF02405 Permease MlaE WSQ_RS00020 PF00005 ABC transporter WSQ_RS00040 PF00438 S-adenosylmethionine synthetase, N-terminal domain WSQ_RS00040 PF02772 S-adenosylmethionine synthetase, central domain WSQ_RS00040 PF02773 S-adenosylmethionine synthetase, C-terminal domain WSQ_RS00050 PF01494 FAD binding domain WSQ_RS00065 PF02091 Glycyl-tRNA synthetase alpha subunit WSQ_RS00070 PF02092 Glycyl-tRNA synthetase beta subunit WSQ_RS00070 PF05746 DALR anticodon binding domain WSQ_RS00075 PF01556 DnaJ C terminal domain WSQ_RS00075 PF00226 DnaJ domain WSQ_RS00075 PF00684 DnaJ central domain WSQ_RS00080 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WSQ_RS00080 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WSQ_RS00085 PF02660 Glycerol-3-phosphate acyltransferase WSQ_RS00090 PF02075 Crossover junction endodeoxyribonuclease RuvC WSQ_RS00095 PF00510 Cytochrome c oxidase subunit III WSQ_RS00100 PF01208 Uroporphyrinogen decarboxylase (URO-D) WSQ_RS00105 PF03471 Transporter associated domain WSQ_RS00105 PF00571 CBS domain WSQ_RS00115 PF04860 Phage portal protein WSQ_RS00120 PF13847 Methyltransferase domain WSQ_RS00125 PF02445 Quinolinate synthetase A protein WSQ_RS00130 PF11953 Domain of unknown function (DUF3470) WSQ_RS00130 PF00037 4Fe-4S binding domain WSQ_RS00160 PF00579 tRNA synthetases class I (W and Y) WSQ_RS00165 PF01025 GrpE WSQ_RS00170 PF01872 RibD C-terminal domain WSQ_RS00170 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WSQ_RS00175 PF06418 CTP synthase N-terminus WSQ_RS00175 PF00117 Glutamine amidotransferase class-I WSQ_RS00185 PF00589 Phage integrase family WSQ_RS00185 PF02899 Phage integrase, N-terminal SAM-like domain WSQ_RS00190 PF00005 ABC transporter WSQ_RS00195 PF00390 Malic enzyme, N-terminal domain WSQ_RS00195 PF03949 Malic enzyme, NAD binding domain WSQ_RS00195 PF01515 Phosphate acetyl/butaryl transferase WSQ_RS00205 PF00361 Proton-conducting membrane transporter WSQ_RS00215 PF02470 MlaD protein WSQ_RS00225 PF03477 ATP cone domain WSQ_RS00245 PF13416 Bacterial extracellular solute-binding protein WSQ_RS00250 PF03966 Trm112p-like protein WSQ_RS00255 PF08946 Osmosensory transporter coiled coil WSQ_RS00255 PF00083 Sugar (and other) transporter WSQ_RS00260 PF00886 Ribosomal protein S16 WSQ_RS00270 PF02773 S-adenosylmethionine synthetase, C-terminal domain WSQ_RS00270 PF02772 S-adenosylmethionine synthetase, central domain WSQ_RS00270 PF00438 S-adenosylmethionine synthetase, N-terminal domain WSQ_RS00280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WSQ_RS00280 PF01409 tRNA synthetases class II core domain (F) WSQ_RS00285 PF00453 Ribosomal protein L20 WSQ_RS00290 PF01632 Ribosomal protein L35 WSQ_RS00300 PF07497 Rho termination factor, RNA-binding domain WSQ_RS00300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WSQ_RS00300 PF07498 Rho termination factor, N-terminal domain WSQ_RS00305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSQ_RS00305 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_RS00310 PF01556 DnaJ C terminal domain WSQ_RS00310 PF00684 DnaJ central domain WSQ_RS00310 PF00226 DnaJ domain WSQ_RS00315 PF01106 NifU-like domain WSQ_RS00330 PF05690 Thiazole biosynthesis protein ThiG WSQ_RS00340 PF00749 tRNA synthetases class I (E and Q), catalytic domain WSQ_RS00375 PF02609 Exonuclease VII small subunit WSQ_RS00380 PF00085 Thioredoxin WSQ_RS00390 PF00676 Dehydrogenase E1 component WSQ_RS00395 PF12146 Serine aminopeptidase, S33 WSQ_RS00415 PF00551 Formyl transferase WSQ_RS00420 PF00478 IMP dehydrogenase / GMP reductase domain WSQ_RS00420 PF00571 CBS domain WSQ_RS00425 PF01513 ATP-NAD kinase WSQ_RS00435 PF04860 Phage portal protein WSQ_RS00440 PF00698 Acyl transferase domain WSQ_RS00445 PF02223 Thymidylate kinase WSQ_RS00465 PF02556 Preprotein translocase subunit SecB WSQ_RS00470 PF13462 Thioredoxin WSQ_RS00480 PF00675 Insulinase (Peptidase family M16) WSQ_RS00480 PF05193 Peptidase M16 inactive domain WSQ_RS00490 PF00696 Amino acid kinase family WSQ_RS00500 PF00677 Lumazine binding domain WSQ_RS00505 PF17757 UvrB interaction domain WSQ_RS00505 PF03461 TRCF domain WSQ_RS00505 PF00271 Helicase conserved C-terminal domain WSQ_RS00505 PF00270 DEAD/DEAH box helicase WSQ_RS00505 PF02559 CarD-like/TRCF domain WSQ_RS00510 PF00075 RNase H WSQ_RS00520 PF00696 Amino acid kinase family WSQ_RS00525 PF01765 Ribosome recycling factor WSQ_RS00550 PF01259 SAICAR synthetase WSQ_RS00555 PF13393 Histidyl-tRNA synthetase WSQ_RS00555 PF03129 Anticodon binding domain WSQ_RS00565 PF02628 Cytochrome oxidase assembly protein WSQ_RS00570 PF00005 ABC transporter WSQ_RS00575 PF12327 FtsZ family, C-terminal domain WSQ_RS00575 PF00091 Tubulin/FtsZ family, GTPase domain WSQ_RS00605 PF00313 'Cold-shock' DNA-binding domain WSQ_RS00610 PF00512 His Kinase A (phospho-acceptor) domain WSQ_RS00610 PF00672 HAMP domain WSQ_RS00610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSQ_RS00610 PF00989 PAS fold WSQ_RS00615 PF01612 3'-5' exonuclease WSQ_RS00615 PF00570 HRDC domain WSQ_RS00620 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WSQ_RS00620 PF12826 Helix-hairpin-helix motif WSQ_RS00620 PF03120 NAD-dependent DNA ligase OB-fold domain WSQ_RS00620 PF01653 NAD-dependent DNA ligase adenylation domain WSQ_RS00620 PF00533 BRCA1 C Terminus (BRCT) domain WSQ_RS00625 PF00462 Glutaredoxin WSQ_RS00635 PF08534 Redoxin WSQ_RS00660 PF00625 Guanylate kinase WSQ_RS00675 PF01250 Ribosomal protein S6 WSQ_RS00680 PF01084 Ribosomal protein S18 WSQ_RS00685 PF03948 Ribosomal protein L9, C-terminal domain WSQ_RS00685 PF01281 Ribosomal protein L9, N-terminal domain WSQ_RS00690 PF00464 Serine hydroxymethyltransferase WSQ_RS00700 PF00005 ABC transporter WSQ_RS00700 PF00664 ABC transporter transmembrane region WSQ_RS00705 PF00890 FAD binding domain WSQ_RS00705 PF02910 Fumarate reductase flavoprotein C-term WSQ_RS00710 PF13085 2Fe-2S iron-sulfur cluster binding domain WSQ_RS00710 PF13237 4Fe-4S dicluster domain WSQ_RS00715 PF02910 Fumarate reductase flavoprotein C-term WSQ_RS00715 PF00890 FAD binding domain WSQ_RS00720 PF13085 2Fe-2S iron-sulfur cluster binding domain WSQ_RS00720 PF13237 4Fe-4S dicluster domain WSQ_RS00725 PF02511 Thymidylate synthase complementing protein WSQ_RS00730 PF07690 Major Facilitator Superfamily WSQ_RS00740 PF02091 Glycyl-tRNA synthetase alpha subunit WSQ_RS00745 PF05496 Holliday junction DNA helicase RuvB P-loop domain WSQ_RS00745 PF05491 RuvB C-terminal winged helix domain WSQ_RS00745 PF17864 RuvB AAA lid domain WSQ_RS00750 PF01330 RuvA N terminal domain WSQ_RS00750 PF07499 RuvA, C-terminal domain WSQ_RS00755 PF01578 Cytochrome C assembly protein WSQ_RS00760 PF00625 Guanylate kinase WSQ_RS00770 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WSQ_RS00770 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WSQ_RS00795 PF00034 Cytochrome c WSQ_RS00800 PF00361 Proton-conducting membrane transporter WSQ_RS00805 PF02896 PEP-utilising enzyme, TIM barrel domain WSQ_RS00805 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WSQ_RS00805 PF00391 PEP-utilising enzyme, mobile domain WSQ_RS00815 PF13419 Haloacid dehalogenase-like hydrolase WSQ_RS00830 PF01336 OB-fold nucleic acid binding domain WSQ_RS00830 PF02938 GAD domain WSQ_RS00830 PF00152 tRNA synthetases class II (D, K and N) WSQ_RS00835 PF04972 BON domain WSQ_RS00840 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain WSQ_RS00840 PF02951 Prokaryotic glutathione synthetase, N-terminal domain WSQ_RS00845 PF08478 POTRA domain, FtsQ-type WSQ_RS00845 PF03799 Cell division protein FtsQ WSQ_RS00850 PF00158 Sigma-54 interaction domain WSQ_RS00850 PF02954 Bacterial regulatory protein, Fis family WSQ_RS00850 PF00072 Response regulator receiver domain WSQ_RS00855 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WSQ_RS00855 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WSQ_RS00860 PF00589 Phage integrase family WSQ_RS00860 PF02899 Phage integrase, N-terminal SAM-like domain WSQ_RS00870 PF02769 AIR synthase related protein, C-terminal domain WSQ_RS00870 PF00586 AIR synthase related protein, N-terminal domain WSQ_RS00880 PF02769 AIR synthase related protein, C-terminal domain WSQ_RS00880 PF00586 AIR synthase related protein, N-terminal domain WSQ_RS00905 PF00586 AIR synthase related protein, N-terminal domain WSQ_RS00905 PF02769 AIR synthase related protein, C-terminal domain WSQ_RS00915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WSQ_RS00920 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WSQ_RS00920 PF02769 AIR synthase related protein, C-terminal domain WSQ_RS00920 PF00586 AIR synthase related protein, N-terminal domain WSQ_RS00940 PF06968 Biotin and Thiamin Synthesis associated domain WSQ_RS00940 PF04055 Radical SAM superfamily WSQ_RS00955 PF01476 LysM domain WSQ_RS00955 PF01551 Peptidase family M23 WSQ_RS00960 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded WSQ_RS00965 PF13932 GidA associated domain WSQ_RS00965 PF01134 Glucose inhibited division protein A WSQ_RS00970 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal WSQ_RS00970 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WSQ_RS00970 PF02769 AIR synthase related protein, C-terminal domain WSQ_RS00995 PF00551 Formyl transferase WSQ_RS01000 PF02789 Cytosol aminopeptidase family, N-terminal domain WSQ_RS01000 PF00883 Cytosol aminopeptidase family, catalytic domain WSQ_RS01005 PF00775 Dioxygenase WSQ_RS01020 PF10431 C-terminal, D2-small domain, of ClpB protein WSQ_RS01020 PF02861 Clp amino terminal domain, pathogenicity island component WSQ_RS01020 PF17871 AAA lid domain WSQ_RS01020 PF07724 AAA domain (Cdc48 subfamily) WSQ_RS01020 PF00004 ATPase family associated with various cellular activities (AAA) WSQ_RS01040 PF00118 TCP-1/cpn60 chaperonin family WSQ_RS01045 PF00166 Chaperonin 10 Kd subunit WSQ_RS01050 PF04002 RadC-like JAB domain WSQ_RS01055 PF03099 Biotin/lipoate A/B protein ligase family WSQ_RS01060 PF01979 Amidohydrolase family WSQ_RS01065 PF02441 Flavoprotein WSQ_RS01065 PF04127 DNA / pantothenate metabolism flavoprotein WSQ_RS01070 PF00206 Lyase WSQ_RS01070 PF10415 Fumarase C C-terminus WSQ_RS01080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WSQ_RS01080 PF02142 MGS-like domain WSQ_RS01080 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WSQ_RS01085 PF00809 Pterin binding enzyme WSQ_RS01090 PF00664 ABC transporter transmembrane region WSQ_RS01090 PF00005 ABC transporter WSQ_RS01095 PF08240 Alcohol dehydrogenase GroES-like domain WSQ_RS01095 PF00107 Zinc-binding dehydrogenase WSQ_RS01100 PF13361 UvrD-like helicase C-terminal domain WSQ_RS01100 PF00580 UvrD/REP helicase N-terminal domain WSQ_RS01100 PF12705 PD-(D/E)XK nuclease superfamily WSQ_RS01125 PF00762 Ferrochelatase WSQ_RS01145 PF02779 Transketolase, pyrimidine binding domain WSQ_RS01145 PF00456 Transketolase, thiamine diphosphate binding domain WSQ_RS01145 PF02780 Transketolase, C-terminal domain WSQ_RS01155 PF00216 Bacterial DNA-binding protein WSQ_RS01160 PF01343 Peptidase family S49 WSQ_RS01165 PF00575 S1 RNA binding domain WSQ_RS01170 PF02224 Cytidylate kinase WSQ_RS01175 PF08032 RNA 2'-O ribose methyltransferase substrate binding WSQ_RS01175 PF00588 SpoU rRNA Methylase family WSQ_RS01190 PF03143 Elongation factor Tu C-terminal domain WSQ_RS01190 PF03144 Elongation factor Tu domain 2 WSQ_RS01190 PF00009 Elongation factor Tu GTP binding domain WSQ_RS01195 PF00338 Ribosomal protein S10p/S20e WSQ_RS01200 PF00297 Ribosomal protein L3 WSQ_RS01205 PF00573 Ribosomal protein L4/L1 family WSQ_RS01210 PF00276 Ribosomal protein L23 WSQ_RS01215 PF03947 Ribosomal Proteins L2, C-terminal domain WSQ_RS01215 PF00181 Ribosomal Proteins L2, RNA binding domain WSQ_RS01220 PF00203 Ribosomal protein S19 WSQ_RS01225 PF00237 Ribosomal protein L22p/L17e WSQ_RS01230 PF07650 KH domain WSQ_RS01230 PF00189 Ribosomal protein S3, C-terminal domain WSQ_RS01235 PF00252 Ribosomal protein L16p/L10e WSQ_RS01240 PF00831 Ribosomal L29 protein WSQ_RS01245 PF00366 Ribosomal protein S17 WSQ_RS01250 PF00238 Ribosomal protein L14p/L23e WSQ_RS01255 PF00467 KOW motif WSQ_RS01255 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WSQ_RS01260 PF00281 Ribosomal protein L5 WSQ_RS01260 PF00673 ribosomal L5P family C-terminus WSQ_RS01265 PF00253 Ribosomal protein S14p/S29e WSQ_RS01270 PF00410 Ribosomal protein S8 WSQ_RS01275 PF00347 Ribosomal protein L6 WSQ_RS01280 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WSQ_RS01285 PF03719 Ribosomal protein S5, C-terminal domain WSQ_RS01285 PF00333 Ribosomal protein S5, N-terminal domain WSQ_RS01290 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WSQ_RS01295 PF00344 SecY translocase WSQ_RS01300 PF05191 Adenylate kinase, active site lid WSQ_RS01305 PF00416 Ribosomal protein S13/S18 WSQ_RS01310 PF00411 Ribosomal protein S11 WSQ_RS01315 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WSQ_RS01315 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WSQ_RS01315 PF01000 RNA polymerase Rpb3/RpoA insert domain WSQ_RS01320 PF01196 Ribosomal protein L17 WSQ_RS01325 PF03483 B3/4 domain WSQ_RS01325 PF03484 tRNA synthetase B5 domain WSQ_RS01325 PF03147 Ferredoxin-fold anticodon binding domain WSQ_RS01325 PF01588 Putative tRNA binding domain WSQ_RS01325 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WSQ_RS01330 PF03772 Competence protein WSQ_RS01330 PF00753 Metallo-beta-lactamase superfamily WSQ_RS01330 PF13567 Domain of unknown function (DUF4131) WSQ_RS01340 PF00825 Ribonuclease P WSQ_RS01345 PF01040 UbiA prenyltransferase family WSQ_RS01350 PF01613 Flavin reductase like domain WSQ_RS01355 PF00005 ABC transporter WSQ_RS01360 PF01702 Queuine tRNA-ribosyltransferase WSQ_RS01365 PF01783 Ribosomal L32p protein family WSQ_RS01370 PF02504 Fatty acid synthesis protein WSQ_RS01375 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WSQ_RS01375 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WSQ_RS01385 PF14437 MafB19-like deaminase WSQ_RS01395 PF03796 DnaB-like helicase C terminal domain WSQ_RS01395 PF00772 DnaB-like helicase N terminal domain WSQ_RS01400 PF01266 FAD dependent oxidoreductase WSQ_RS01405 PF02779 Transketolase, pyrimidine binding domain WSQ_RS01405 PF00456 Transketolase, thiamine diphosphate binding domain WSQ_RS01405 PF02780 Transketolase, C-terminal domain WSQ_RS01420 PF00348 Polyprenyl synthetase WSQ_RS01430 PF00317 Ribonucleotide reductase, all-alpha domain WSQ_RS01430 PF02867 Ribonucleotide reductase, barrel domain WSQ_RS01430 PF03477 ATP cone domain WSQ_RS01435 PF03652 Holliday junction resolvase WSQ_RS01440 PF00709 Adenylosuccinate synthetase WSQ_RS01445 PF00270 DEAD/DEAH box helicase WSQ_RS01445 PF00271 Helicase conserved C-terminal domain WSQ_RS01445 PF17764 3′ DNA-binding domain (3′BD) WSQ_RS01445 PF18074 Primosomal protein N C-terminal domain WSQ_RS01445 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WSQ_RS01450 PF00691 OmpA family WSQ_RS01460 PF02779 Transketolase, pyrimidine binding domain WSQ_RS01460 PF00456 Transketolase, thiamine diphosphate binding domain WSQ_RS01460 PF02780 Transketolase, C-terminal domain WSQ_RS01470 PF03334 Na+/H+ antiporter subunit WSQ_RS01480 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter WSQ_RS01490 PF12111 Polyribonucleotide phosphorylase C terminal WSQ_RS01490 PF10150 Ribonuclease E/G family WSQ_RS01490 PF00575 S1 RNA binding domain WSQ_RS01495 PF00012 Hsp70 protein WSQ_RS01505 PF00361 Proton-conducting membrane transporter WSQ_RS01510 PF00448 SRP54-type protein, GTPase domain WSQ_RS01510 PF02978 Signal peptide binding domain WSQ_RS01510 PF02881 SRP54-type protein, helical bundle domain WSQ_RS01515 PF07650 KH domain WSQ_RS01515 PF01926 50S ribosome-binding GTPase WSQ_RS01550 PF00270 DEAD/DEAH box helicase WSQ_RS01550 PF00271 Helicase conserved C-terminal domain WSQ_RS01550 PF17764 3′ DNA-binding domain (3′BD) WSQ_RS01550 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WSQ_RS01550 PF18074 Primosomal protein N C-terminal domain WSQ_RS01555 PF00830 Ribosomal L28 family WSQ_RS01565 PF00849 RNA pseudouridylate synthase WSQ_RS01575 PF00364 Biotin-requiring enzyme WSQ_RS01575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WSQ_RS01575 PF02785 Biotin carboxylase C-terminal domain WSQ_RS01575 PF18140 Propionyl-coenzyme A carboxylase BT domain WSQ_RS01575 PF00289 Biotin carboxylase, N-terminal domain WSQ_RS01595 PF04055 Radical SAM superfamily WSQ_RS01605 PF00528 Binding-protein-dependent transport system inner membrane component WSQ_RS01610 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WSQ_RS01610 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WSQ_RS01620 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WSQ_RS01630 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WSQ_RS01640 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WSQ_RS01650 PF00692 dUTPase WSQ_RS01655 PF02401 LytB protein WSQ_RS01665 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WSQ_RS01665 PF00117 Glutamine amidotransferase class-I WSQ_RS01705 PF01676 Metalloenzyme superfamily WSQ_RS01705 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WSQ_RS01710 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WSQ_RS01710 PF01926 50S ribosome-binding GTPase WSQ_RS01720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSQ_RS01720 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_RS01730 PF01176 Translation initiation factor 1A / IF-1 WSQ_RS01735 PF02545 Maf-like protein WSQ_RS01740 PF00318 Ribosomal protein S2 WSQ_RS01745 PF00889 Elongation factor TS WSQ_RS01750 PF00950 ABC 3 transport family WSQ_RS01760 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal WSQ_RS01760 PF00355 Rieske [2Fe-2S] domain WSQ_RS01765 PF00033 Cytochrome b/b6/petB WSQ_RS01765 PF00032 Cytochrome b(C-terminal)/b6/petD WSQ_RS01770 PF02167 Cytochrome C1 family WSQ_RS01805 PF00749 tRNA synthetases class I (E and Q), catalytic domain WSQ_RS01815 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WSQ_RS01815 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WSQ_RS01815 PF06827 Zinc finger found in FPG and IleRS WSQ_RS01820 PF01134 Glucose inhibited division protein A WSQ_RS01820 PF13932 GidA associated domain WSQ_RS01830 PF01039 Carboxyl transferase domain WSQ_RS01835 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WSQ_RS01840 PF00472 RF-1 domain WSQ_RS01840 PF03462 PCRF domain WSQ_RS01845 PF01926 50S ribosome-binding GTPase WSQ_RS01850 PF00696 Amino acid kinase family WSQ_RS01855 PF01218 Coproporphyrinogen III oxidase WSQ_RS01870 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WSQ_RS01870 PF02403 Seryl-tRNA synthetase N-terminal domain WSQ_RS01875 PF02646 RmuC family WSQ_RS01900 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit WSQ_RS01900 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WSQ_RS01900 PF10531 SLBB domain WSQ_RS01910 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WSQ_RS01915 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WSQ_RS01920 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WSQ_RS01920 PF00361 Proton-conducting membrane transporter WSQ_RS01925 PF00361 Proton-conducting membrane transporter WSQ_RS01925 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus WSQ_RS01930 PF00361 Proton-conducting membrane transporter WSQ_RS01935 PF13288 DXP reductoisomerase C-terminal domain WSQ_RS01935 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WSQ_RS01935 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WSQ_RS01945 PF04551 GcpE protein WSQ_RS01950 PF00902 Sec-independent protein translocase protein (TatC) WSQ_RS01955 PF00873 AcrB/AcrD/AcrF family WSQ_RS01960 PF13184 NusA-like KH domain WSQ_RS01960 PF08529 NusA N-terminal domain WSQ_RS01960 PF00575 S1 RNA binding domain WSQ_RS01965 PF11987 Translation-initiation factor 2 WSQ_RS01965 PF00009 Elongation factor Tu GTP binding domain WSQ_RS01965 PF04760 Translation initiation factor IF-2, N-terminal region WSQ_RS01970 PF02033 Ribosome-binding factor A WSQ_RS01975 PF00009 Elongation factor Tu GTP binding domain WSQ_RS01975 PF03764 Elongation factor G, domain IV WSQ_RS01975 PF14492 Elongation Factor G, domain II WSQ_RS01975 PF00679 Elongation factor G C-terminus WSQ_RS01975 PF03144 Elongation factor Tu domain 2 WSQ_RS01980 PF03741 Integral membrane protein TerC family WSQ_RS01980 PF03471 Transporter associated domain WSQ_RS01985 PF10431 C-terminal, D2-small domain, of ClpB protein WSQ_RS01985 PF00004 ATPase family associated with various cellular activities (AAA) WSQ_RS01985 PF07724 AAA domain (Cdc48 subfamily) WSQ_RS01985 PF17871 AAA lid domain WSQ_RS01985 PF02861 Clp amino terminal domain, pathogenicity island component WSQ_RS01990 PF00009 Elongation factor Tu GTP binding domain WSQ_RS01990 PF00679 Elongation factor G C-terminus WSQ_RS01990 PF03144 Elongation factor Tu domain 2 WSQ_RS02040 PF00436 Single-strand binding protein family WSQ_RS02045 PF00472 RF-1 domain WSQ_RS02045 PF03462 PCRF domain WSQ_RS02055 PF02934 GatB/GatE catalytic domain WSQ_RS02055 PF02637 GatB domain WSQ_RS02075 PF11638 DnaA N-terminal domain WSQ_RS02075 PF08299 Bacterial dnaA protein helix-turn-helix WSQ_RS02075 PF00308 Bacterial dnaA protein WSQ_RS02090 PF03462 PCRF domain WSQ_RS02090 PF00472 RF-1 domain WSQ_RS02095 PF01709 Transcriptional regulator WSQ_RS02105 PF06968 Biotin and Thiamin Synthesis associated domain WSQ_RS02105 PF00202 Aminotransferase class-III WSQ_RS02105 PF04055 Radical SAM superfamily WSQ_RS02130 PF00923 Transaldolase/Fructose-6-phosphate aldolase WSQ_RS02140 PF02874 ATP synthase alpha/beta family, beta-barrel domain WSQ_RS02140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WSQ_RS02160 PF01728 FtsJ-like methyltransferase WSQ_RS02170 PF01416 tRNA pseudouridine synthase WSQ_RS02175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WSQ_RS02175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WSQ_RS02180 PF01728 FtsJ-like methyltransferase WSQ_RS02195 PF00444 Ribosomal protein L36 WSQ_RS02210 PF01192 RNA polymerase Rpb6 WSQ_RS02225 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WSQ_RS02230 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WSQ_RS02235 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WSQ_RS02240 PF01975 Survival protein SurE WSQ_RS02245 PF03100 CcmE WSQ_RS02250 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WSQ_RS02255 PF01026 TatD related DNase WSQ_RS02265 PF09334 tRNA synthetases class I (M) WSQ_RS02265 PF13603 Leucyl-tRNA synthetase, Domain 2 WSQ_RS02265 PF08264 Anticodon-binding domain of tRNA WSQ_RS02265 PF00133 tRNA synthetases class I (I, L, M and V) WSQ_RS02280 PF17755 UvrA DNA-binding domain WSQ_RS02280 PF17760 UvrA interaction domain WSQ_RS02290 PF00885 6,7-dimethyl-8-ribityllumazine synthase WSQ_RS02295 PF14849 YidC periplasmic domain WSQ_RS02295 PF02096 60Kd inner membrane protein WSQ_RS02300 PF02096 60Kd inner membrane protein WSQ_RS02300 PF14849 YidC periplasmic domain WSQ_RS02305 PF00384 Molybdopterin oxidoreductase WSQ_RS02305 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WSQ_RS02305 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal WSQ_RS02310 PF01066 CDP-alcohol phosphatidyltransferase WSQ_RS02315 PF02666 Phosphatidylserine decarboxylase WSQ_RS02320 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_RS02330 PF09285 Elongation factor P, C-terminal WSQ_RS02330 PF01132 Elongation factor P (EF-P) OB domain WSQ_RS02330 PF08207 Elongation factor P (EF-P) KOW-like domain WSQ_RS02335 PF00459 Inositol monophosphatase family WSQ_RS02340 PF00849 RNA pseudouridylate synthase WSQ_RS02340 PF01479 S4 domain WSQ_RS02345 PF00990 Diguanylate cyclase, GGDEF domain WSQ_RS02345 PF00072 Response regulator receiver domain WSQ_RS02355 PF05088 Bacterial NAD-glutamate dehydrogenase WSQ_RS02365 PF06055 Exopolysaccharide synthesis, ExoD WSQ_RS02370 PF01406 tRNA synthetases class I (C) catalytic domain WSQ_RS02370 PF09190 DALR domain WSQ_RS02385 PF00268 Ribonucleotide reductase, small chain WSQ_RS02410 PF01807 CHC2 zinc finger WSQ_RS02410 PF13662 Toprim domain WSQ_RS02410 PF08275 DNA primase catalytic core, N-terminal domain WSQ_RS02415 PF01624 MutS domain I WSQ_RS02415 PF05190 MutS family domain IV WSQ_RS02415 PF00488 MutS domain V WSQ_RS02415 PF05188 MutS domain II WSQ_RS02415 PF05192 MutS domain III WSQ_RS02420 PF08544 GHMP kinases C terminal WSQ_RS02420 PF00288 GHMP kinases N terminal domain WSQ_RS02425 PF01207 Dihydrouridine synthase (Dus) WSQ_RS02430 PF00140 Sigma-70 factor, region 1.2 WSQ_RS02430 PF03979 Sigma-70 factor, region 1.1 WSQ_RS02430 PF04539 Sigma-70 region 3 WSQ_RS02430 PF04545 Sigma-70, region 4 WSQ_RS02430 PF04546 Sigma-70, non-essential region WSQ_RS02430 PF04542 Sigma-70 region 2 WSQ_RS02445 PF03091 CutA1 divalent ion tolerance protein WSQ_RS02450 PF00072 Response regulator receiver domain WSQ_RS02450 PF08448 PAS fold WSQ_RS02450 PF00512 His Kinase A (phospho-acceptor) domain WSQ_RS02450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSQ_RS02450 PF13188 PAS domain WSQ_RS02470 PF01964 Radical SAM ThiC family WSQ_RS02470 PF13667 ThiC-associated domain WSQ_RS02475 PF03853 YjeF-related protein N-terminus WSQ_RS02475 PF01256 Carbohydrate kinase WSQ_RS02490 PF01131 DNA topoisomerase WSQ_RS02490 PF13368 Topoisomerase C-terminal repeat WSQ_RS02490 PF01751 Toprim domain WSQ_RS02490 PF01396 Topoisomerase DNA binding C4 zinc finger WSQ_RS02495 PF13667 ThiC-associated domain WSQ_RS02495 PF01964 Radical SAM ThiC family WSQ_RS02515 PF01921 tRNA synthetases class I (K) WSQ_RS02525 PF00814 Glycoprotease family WSQ_RS02575 PF00398 Ribosomal RNA adenine dimethylase WSQ_RS02585 PF00121 Triosephosphate isomerase WSQ_RS02590 PF16868 NMT1-like family WSQ_RS02595 PF00814 Glycoprotease family WSQ_RS02610 PF00056 lactate/malate dehydrogenase, NAD binding domain WSQ_RS02610 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WSQ_RS02660 PF02502 Ribose/Galactose Isomerase WSQ_RS02675 PF01648 4'-phosphopantetheinyl transferase superfamily WSQ_RS02680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WSQ_RS02680 PF03129 Anticodon binding domain WSQ_RS02695 PF01467 Cytidylyltransferase-like WSQ_RS02725 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_RS02730 PF10417 C-terminal domain of 1-Cys peroxiredoxin WSQ_RS02730 PF00578 AhpC/TSA family WSQ_RS02735 PF00155 Aminotransferase class I and II WSQ_RS02760 PF14850 DNA-binding domain of Proline dehydrogenase WSQ_RS02760 PF18327 Proline utilization A proline dehydrogenase N-terminal domain WSQ_RS02760 PF00171 Aldehyde dehydrogenase family WSQ_RS02760 PF01619 Proline dehydrogenase WSQ_RS02765 PF02129 X-Pro dipeptidyl-peptidase (S15 family) WSQ_RS02770 PF00266 Aminotransferase class-V WSQ_RS02775 PF00266 Aminotransferase class-V WSQ_RS02780 PF01592 NifU-like N terminal domain WSQ_RS02785 PF01521 Iron-sulphur cluster biosynthesis WSQ_RS02790 PF07743 HSCB C-terminal oligomerisation domain WSQ_RS02790 PF00226 DnaJ domain WSQ_RS02795 PF00012 Hsp70 protein WSQ_RS02800 PF00111 2Fe-2S iron-sulfur cluster binding domain WSQ_RS02840 PF01795 MraW methylase family WSQ_RS02850 PF01926 50S ribosome-binding GTPase WSQ_RS02850 PF01018 GTP1/OBG WSQ_RS02855 PF00113 Enolase, C-terminal TIM barrel domain WSQ_RS02855 PF03952 Enolase, N-terminal domain WSQ_RS02865 PF00829 Ribosomal prokaryotic L21 protein WSQ_RS02870 PF01016 Ribosomal L27 protein WSQ_RS02880 PF00750 tRNA synthetases class I (R) WSQ_RS02880 PF03485 Arginyl tRNA synthetase N terminal domain WSQ_RS02880 PF05746 DALR anticodon binding domain WSQ_RS02885 PF01523 Putative modulator of DNA gyrase WSQ_RS02890 PF01227 GTP cyclohydrolase I WSQ_RS02895 PF00231 ATP synthase WSQ_RS02910 PF00146 NADH dehydrogenase WSQ_RS02915 PF00384 Molybdopterin oxidoreductase WSQ_RS02915 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WSQ_RS02915 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal WSQ_RS02925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSQ_RS02925 PF00204 DNA gyrase B WSQ_RS02925 PF01751 Toprim domain WSQ_RS02925 PF00986 DNA gyrase B subunit, carboxyl terminus WSQ_RS02970 PF00929 Exonuclease WSQ_RS02980 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WSQ_RS02985 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_RS02990 PF00586 AIR synthase related protein, N-terminal domain WSQ_RS02990 PF02769 AIR synthase related protein, C-terminal domain WSQ_RS02995 PF02565 Recombination protein O C terminal WSQ_RS02995 PF11967 Recombination protein O N terminal WSQ_RS03025 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WSQ_RS03025 PF01565 FAD binding domain WSQ_RS03030 PF03900 Porphobilinogen deaminase, C-terminal domain WSQ_RS03030 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WSQ_RS03035 PF02875 Mur ligase family, glutamate ligase domain WSQ_RS03035 PF08245 Mur ligase middle domain WSQ_RS03040 PF01425 Amidase WSQ_RS03045 PF02441 Flavoprotein WSQ_RS03055 PF13335 Magnesium chelatase, subunit ChlI C-terminal WSQ_RS03055 PF01078 Magnesium chelatase, subunit ChlI WSQ_RS03070 PF04542 Sigma-70 region 2 WSQ_RS03070 PF04545 Sigma-70, region 4 WSQ_RS03070 PF00140 Sigma-70 factor, region 1.2 WSQ_RS03080 PF03144 Elongation factor Tu domain 2 WSQ_RS03080 PF00679 Elongation factor G C-terminus WSQ_RS03080 PF00009 Elongation factor Tu GTP binding domain WSQ_RS03080 PF06421 GTP-binding protein LepA C-terminus WSQ_RS03090 PF00575 S1 RNA binding domain WSQ_RS03090 PF03725 3' exoribonuclease family, domain 2 WSQ_RS03090 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WSQ_RS03090 PF00013 KH domain WSQ_RS03090 PF01138 3' exoribonuclease family, domain 1 WSQ_RS03095 PF00312 Ribosomal protein S15 WSQ_RS03100 PF16198 tRNA pseudouridylate synthase B C-terminal domain WSQ_RS03100 PF01509 TruB family pseudouridylate synthase (N terminal domain) WSQ_RS03135 PF01121 Dephospho-CoA kinase WSQ_RS03140 PF01300 Telomere recombination WSQ_RS03140 PF03481 Putative GTP-binding controlling metal-binding WSQ_RS03145 PF09115 DNA polymerase III, delta subunit, C terminal WSQ_RS03155 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WSQ_RS03160 PF01467 Cytidylyltransferase-like WSQ_RS03175 PF04452 RNA methyltransferase WSQ_RS03180 PF00578 AhpC/TSA family WSQ_RS03185 PF00133 tRNA synthetases class I (I, L, M and V) WSQ_RS03185 PF08264 Anticodon-binding domain of tRNA WSQ_RS03195 PF12838 4Fe-4S dicluster domain WSQ_RS03200 PF10502 Signal peptidase, peptidase S26 WSQ_RS03205 PF01521 Iron-sulphur cluster biosynthesis WSQ_RS03235 PF00231 ATP synthase WSQ_RS03240 PF01227 GTP cyclohydrolase I WSQ_RS03355 PF08946 Osmosensory transporter coiled coil WSQ_RS03355 PF00083 Sugar (and other) transporter WSQ_RS03365 PF00490 Delta-aminolevulinic acid dehydratase WSQ_RS03385 PF05188 MutS domain II WSQ_RS03385 PF00488 MutS domain V WSQ_RS03385 PF01624 MutS domain I WSQ_RS03385 PF05190 MutS family domain IV WSQ_RS03385 PF05192 MutS domain III WSQ_RS03395 PF01230 HIT domain WSQ_RS03410 PF16870 2-oxoglutarate dehydrogenase C-terminal WSQ_RS03410 PF16078 2-oxoglutarate dehydrogenase N-terminus WSQ_RS03410 PF02779 Transketolase, pyrimidine binding domain WSQ_RS03410 PF00676 Dehydrogenase E1 component WSQ_RS03420 PF10397 Adenylosuccinate lyase C-terminus WSQ_RS03420 PF00206 Lyase WSQ_RS03445 PF03099 Biotin/lipoate A/B protein ligase family WSQ_RS03445 PF02237 Biotin protein ligase C terminal domain WSQ_RS03445 PF08279 HTH domain WSQ_RS03465 PF00919 Uncharacterized protein family UPF0004 WSQ_RS03465 PF04055 Radical SAM superfamily WSQ_RS03480 PF01541 GIY-YIG catalytic domain WSQ_RS03480 PF08459 UvrC Helix-hairpin-helix N-terminal WSQ_RS03485 PF00154 recA bacterial DNA recombination protein WSQ_RS03490 PF00183 Hsp90 protein WSQ_RS03490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSQ_RS03510 PF00730 HhH-GPD superfamily base excision DNA repair protein WSQ_RS03510 PF00633 Helix-hairpin-helix motif WSQ_RS03515 PF00521 DNA gyrase/topoisomerase IV, subunit A WSQ_RS03515 PF03989 DNA gyrase C-terminal domain, beta-propeller WSQ_RS03530 PF13361 UvrD-like helicase C-terminal domain WSQ_RS03530 PF00580 UvrD/REP helicase N-terminal domain WSQ_RS03565 PF03232 Ubiquinone biosynthesis protein COQ7 WSQ_RS03625 PF00471 Ribosomal protein L33 WSQ_RS03640 PF00550 Phosphopantetheine attachment site WSQ_RS03645 PF00109 Beta-ketoacyl synthase, N-terminal domain WSQ_RS03645 PF02801 Beta-ketoacyl synthase, C-terminal domain WSQ_RS03650 PF17782 DprA winged helix domain WSQ_RS03650 PF02481 DNA recombination-mediator protein A WSQ_RS03675 PF01617 Surface antigen WSQ_RS03680 PF01119 DNA mismatch repair protein, C-terminal domain WSQ_RS03680 PF08676 MutL C terminal dimerisation domain WSQ_RS03685 PF01618 MotA/TolQ/ExbB proton channel family WSQ_RS03705 PF00989 PAS fold WSQ_RS03705 PF00512 His Kinase A (phospho-acceptor) domain WSQ_RS03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WSQ_RS03710 PF00202 Aminotransferase class-III WSQ_RS03730 PF13491 4TM region of DNA translocase FtsK/SpoIIIE WSQ_RS03730 PF01580 FtsK/SpoIIIE family WSQ_RS03730 PF09397 Ftsk gamma domain WSQ_RS03730 PF17854 FtsK alpha domain WSQ_RS03740 PF00571 CBS domain WSQ_RS03740 PF01595 Cyclin M transmembrane N-terminal domain WSQ_RS03740 PF03471 Transporter associated domain WSQ_RS03745 PF02581 Thiamine monophosphate synthase WSQ_RS03750 PF03618 Kinase/pyrophosphorylase WSQ_RS03755 PF17773 UPF0176 acylphosphatase like domain WSQ_RS03755 PF00581 Rhodanese-like domain WSQ_RS03770 PF00551 Formyl transferase WSQ_RS03770 PF02911 Formyl transferase, C-terminal domain WSQ_RS03780 PF02190 ATP-dependent protease La (LON) substrate-binding domain WSQ_RS03780 PF05362 Lon protease (S16) C-terminal proteolytic domain WSQ_RS03780 PF00004 ATPase family associated with various cellular activities (AAA) WSQ_RS03785 PF10431 C-terminal, D2-small domain, of ClpB protein WSQ_RS03785 PF07724 AAA domain (Cdc48 subfamily) WSQ_RS03785 PF06689 ClpX C4-type zinc finger WSQ_RS03790 PF00574 Clp protease WSQ_RS03795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WSQ_RS03795 PF05698 Bacterial trigger factor protein (TF) C-terminus WSQ_RS03795 PF05697 Bacterial trigger factor protein (TF) WSQ_RS03830 PF00155 Aminotransferase class I and II WSQ_RS03845 PF01297 Zinc-uptake complex component A periplasmic WSQ_RS03850 PF00005 ABC transporter WSQ_RS03855 PF03109 ABC1 family WSQ_RS03865 PF08402 TOBE domain WSQ_RS03865 PF00005 ABC transporter WSQ_RS03870 PF02416 mttA/Hcf106 family WSQ_RS03875 PF02132 RecR protein WSQ_RS03875 PF13662 Toprim domain WSQ_RS03880 PF00163 Ribosomal protein S4/S9 N-terminal domain WSQ_RS03880 PF01479 S4 domain WSQ_RS03890 PF08543 Phosphomethylpyrimidine kinase WSQ_RS03890 PF02581 Thiamine monophosphate synthase WSQ_RS03900 PF01594 AI-2E family transporter WSQ_RS03915 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WSQ_RS03920 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WSQ_RS03930 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WSQ_RS03935 PF02811 PHP domain WSQ_RS03935 PF14579 Helix-hairpin-helix motif WSQ_RS03935 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WSQ_RS03935 PF07733 Bacterial DNA polymerase III alpha NTPase domain WSQ_RS03945 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region WSQ_RS03945 PF01243 Pyridoxamine 5'-phosphate oxidase WSQ_RS03950 PF02230 Phospholipase/Carboxylesterase WSQ_RS03955 PF01327 Polypeptide deformylase WSQ_RS03960 PF01180 Dihydroorotate dehydrogenase WSQ_RS03965 PF03309 Type III pantothenate kinase WSQ_RS03975 PF00155 Aminotransferase class I and II WSQ_RS04005 PF01351 Ribonuclease HII WSQ_RS04010 PF04998 RNA polymerase Rpb1, domain 5 WSQ_RS04010 PF05000 RNA polymerase Rpb1, domain 4 WSQ_RS04010 PF04983 RNA polymerase Rpb1, domain 3 WSQ_RS04010 PF00623 RNA polymerase Rpb1, domain 2 WSQ_RS04010 PF04997 RNA polymerase Rpb1, domain 1 WSQ_RS04015 PF04563 RNA polymerase beta subunit WSQ_RS04015 PF04561 RNA polymerase Rpb2, domain 2 WSQ_RS04015 PF04565 RNA polymerase Rpb2, domain 3 WSQ_RS04015 PF10385 RNA polymerase beta subunit external 1 domain WSQ_RS04015 PF00562 RNA polymerase Rpb2, domain 6 WSQ_RS04015 PF04560 RNA polymerase Rpb2, domain 7 WSQ_RS04020 PF00542 Ribosomal protein L7/L12 C-terminal domain WSQ_RS04025 PF00466 Ribosomal protein L10 WSQ_RS04030 PF00687 Ribosomal protein L1p/L10e family WSQ_RS04035 PF03946 Ribosomal protein L11, N-terminal domain WSQ_RS04035 PF00298 Ribosomal protein L11, RNA binding domain WSQ_RS04040 PF00467 KOW motif WSQ_RS04040 PF02357 Transcription termination factor nusG WSQ_RS04055 PF00009 Elongation factor Tu GTP binding domain WSQ_RS04055 PF03143 Elongation factor Tu C-terminal domain WSQ_RS04055 PF03144 Elongation factor Tu domain 2 WSQ_RS04060 PF14492 Elongation Factor G, domain II WSQ_RS04060 PF00009 Elongation factor Tu GTP binding domain WSQ_RS04060 PF03764 Elongation factor G, domain IV WSQ_RS04060 PF00679 Elongation factor G C-terminus WSQ_RS04060 PF03144 Elongation factor Tu domain 2 WSQ_RS04065 PF00177 Ribosomal protein S7p/S5e WSQ_RS04070 PF00164 Ribosomal protein S12/S23 WSQ_RS04075 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WSQ_RS04075 PF17770 Ribonuclease J C-terminal domain WSQ_RS04075 PF12706 Beta-lactamase superfamily domain WSQ_RS04080 PF07676 WD40-like Beta Propeller Repeat WSQ_RS04080 PF04052 TolB amino-terminal domain WSQ_RS04095 PF00529 HlyD membrane-fusion protein of T1SS WSQ_RS04100 PF00528 Binding-protein-dependent transport system inner membrane component WSQ_RS04105 PF03060 Nitronate monooxygenase WSQ_RS04110 PF02630 SCO1/SenC WSQ_RS04120 PF01165 Ribosomal protein S21 WSQ_RS04125 PF08442 ATP-grasp domain WSQ_RS04125 PF00549 CoA-ligase WSQ_RS04130 PF00549 CoA-ligase WSQ_RS04130 PF02629 CoA binding domain WSQ_RS04135 PF01171 PP-loop family WSQ_RS04140 PF00814 Glycoprotease family WSQ_RS04145 PF01411 tRNA synthetases class II (A) WSQ_RS04145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WSQ_RS04150 PF00528 Binding-protein-dependent transport system inner membrane component WSQ_RS04195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WSQ_RS04195 PF07992 Pyridine nucleotide-disulphide oxidoreductase WSQ_RS04200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WSQ_RS04200 PF07498 Rho termination factor, N-terminal domain WSQ_RS04200 PF07497 Rho termination factor, RNA-binding domain WSQ_RS04205 PF00227 Proteasome subunit WSQ_RS04210 PF00004 ATPase family associated with various cellular activities (AAA) WSQ_RS04210 PF07724 AAA domain (Cdc48 subfamily) WSQ_RS04210 PF10431 C-terminal, D2-small domain, of ClpB protein WSQ_RS04215 PF01209 ubiE/COQ5 methyltransferase family WSQ_RS04240 PF09334 tRNA synthetases class I (M) WSQ_RS04240 PF08264 Anticodon-binding domain of tRNA WSQ_RS04265 PF02790 Cytochrome C oxidase subunit II, transmembrane domain WSQ_RS04265 PF00116 Cytochrome C oxidase subunit II, periplasmic domain WSQ_RS04270 PF00115 Cytochrome C and Quinol oxidase polypeptide I WSQ_RS04275 PF01040 UbiA prenyltransferase family WSQ_RS04280 PF13525 Outer membrane lipoprotein WSQ_RS04285 PF02843 Phosphoribosylglycinamide synthetase, C domain WSQ_RS04285 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WSQ_RS04285 PF02844 Phosphoribosylglycinamide synthetase, N domain WSQ_RS04290 PF02699 Preprotein translocase subunit WSQ_RS04295 PF01171 PP-loop family WSQ_RS04300 PF00814 Glycoprotease family WSQ_RS04305 PF01411 tRNA synthetases class II (A) WSQ_RS04305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WSQ_RS04310 PF02768 DNA polymerase III beta subunit, C-terminal domain WSQ_RS04310 PF02767 DNA polymerase III beta subunit, central domain WSQ_RS04310 PF00712 DNA polymerase III beta subunit, N-terminal domain WSQ_RS04320 PF00486 Transcriptional regulatory protein, C terminal WSQ_RS04320 PF00072 Response regulator receiver domain WSQ_RS04330 PF00719 Inorganic pyrophosphatase WSQ_RS04350 PF00380 Ribosomal protein S9/S16 WSQ_RS04355 PF00572 Ribosomal protein L13 WSQ_RS04370 PF10609 NUBPL iron-transfer P-loop NTPase WSQ_RS04375 PF14572 Phosphoribosyl synthetase-associated domain WSQ_RS04375 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WSQ_RS04380 PF02686 Glu-tRNAGln amidotransferase C subunit WSQ_RS04400 PF00694 Aconitase C-terminal domain WSQ_RS04400 PF00330 Aconitase family (aconitate hydratase) WSQ_RS04410 PF02222 ATP-grasp domain WSQ_RS04410 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WSQ_RS04415 PF04379 ApaG domain WSQ_RS04545 PF01145 SPFH domain / Band 7 family WSQ_RS04550 PF01145 SPFH domain / Band 7 family WSQ_RS04555 PF13180 PDZ domain WSQ_RS04560 PF00035 Double-stranded RNA binding motif WSQ_RS04560 PF14622 Ribonuclease-III-like WSQ_RS04565 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 WSQ_RS04610 PF00675 Insulinase (Peptidase family M16) WSQ_RS04610 PF05193 Peptidase M16 inactive domain WSQ_RS04615 PF01252 Signal peptidase (SPase) II WSQ_RS04620 PF01687 Riboflavin kinase WSQ_RS04620 PF06574 FAD synthetase WSQ_RS04625 PF00462 Glutaredoxin WSQ_RS04640 PF02491 SHS2 domain inserted in FTSA WSQ_RS04645 PF17768 RecJ OB domain WSQ_RS04645 PF01368 DHH family WSQ_RS04645 PF10141 Single-strand DNA-specific exonuclease, C terminal domain WSQ_RS04645 PF02272 DHHA1 domain WSQ_RS04650 PF18324 Hypothetical protein TT1725 WSQ_RS04650 PF00180 Isocitrate/isopropylmalate dehydrogenase WSQ_RS04675 PF02104 SURF1 family WSQ_RS04680 PF00156 Phosphoribosyl transferase domain WSQ_RS04685 PF00899 ThiF family WSQ_RS04700 PF07517 SecA DEAD-like domain WSQ_RS04700 PF01043 SecA preprotein cross-linking domain WSQ_RS04700 PF02810 SEC-C motif WSQ_RS04700 PF07516 SecA Wing and Scaffold domain WSQ_RS04705 PF01434 Peptidase family M41 WSQ_RS04705 PF06480 FtsH Extracellular WSQ_RS04705 PF17862 AAA+ lid domain WSQ_RS04705 PF00004 ATPase family associated with various cellular activities (AAA) WSQ_RS04720 PF02386 Cation transport protein WSQ_RS04725 PF02491 SHS2 domain inserted in FTSA WSQ_RS04750 PF00137 ATP synthase subunit C WSQ_RS04755 PF00119 ATP synthase A chain WSQ_RS04760 PF13685 Iron-containing alcohol dehydrogenase WSQ_RS04775 PF00132 Bacterial transferase hexapeptide (six repeats) WSQ_RS04780 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WSQ_RS04780 PF00364 Biotin-requiring enzyme WSQ_RS04780 PF02817 e3 binding domain WSQ_RS04785 PF00557 Metallopeptidase family M24 WSQ_RS04790 PF17827 PrmC N-terminal domain WSQ_RS04790 PF13847 Methyltransferase domain WSQ_RS04805 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WSQ_RS04805 PF01578 Cytochrome C assembly protein WSQ_RS04810 PF00115 Cytochrome C and Quinol oxidase polypeptide I WSQ_RS04815 PF01066 CDP-alcohol phosphatidyltransferase WSQ_RS04820 PF02142 MGS-like domain WSQ_RS04820 PF01808 AICARFT/IMPCHase bienzyme WSQ_RS04825 PF07977 FabA-like domain WSQ_RS04835 PF01103 Surface antigen WSQ_RS04835 PF07244 Surface antigen variable number repeat WSQ_RS04840 PF17820 PDZ domain WSQ_RS04840 PF02163 Peptidase family M50 WSQ_RS04855 PF07943 Penicillin-binding protein 5, C-terminal domain WSQ_RS04855 PF00768 D-alanyl-D-alanine carboxypeptidase WSQ_RS04870 PF13735 tRNA nucleotidyltransferase domain 2 putative WSQ_RS04870 PF12627 Probable RNA and SrmB- binding site of polymerase A WSQ_RS04870 PF01743 Poly A polymerase head domain WSQ_RS04875 PF00334 Nucleoside diphosphate kinase WSQ_RS04880 PF01381 Helix-turn-helix WSQ_RS04900 PF00154 recA bacterial DNA recombination protein WSQ_RS04905 PF08264 Anticodon-binding domain of tRNA WSQ_RS04905 PF00133 tRNA synthetases class I (I, L, M and V) WSQ_RS04920 PF02881 SRP54-type protein, helical bundle domain WSQ_RS04920 PF00448 SRP54-type protein, GTPase domain WSQ_RS04945 PF00285 Citrate synthase, C-terminal domain WSQ_RS04950 PF00117 Glutamine amidotransferase class-I WSQ_RS04950 PF00958 GMP synthase C terminal domain WSQ_RS04970 PF01617 Surface antigen WSQ_RS04990 PF00155 Aminotransferase class I and II WSQ_RS04995 PF00579 tRNA synthetases class I (W and Y) WSQ_RS05005 PF03951 Glutamine synthetase, beta-Grasp domain WSQ_RS05005 PF00120 Glutamine synthetase, catalytic domain WSQ_RS05010 PF00348 Polyprenyl synthetase WSQ_RS05045 PF02817 e3 binding domain WSQ_RS05045 PF00364 Biotin-requiring enzyme WSQ_RS05045 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WSQ_RS05050 PF01791 DeoC/LacD family aldolase WSQ_RS05065 PF05198 Translation initiation factor IF-3, N-terminal domain WSQ_RS05065 PF00707 Translation initiation factor IF-3, C-terminal domain WSQ_RS05070 PF03129 Anticodon binding domain WSQ_RS05070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WSQ_RS05070 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WSQ_RS05075 PF02464 Competence-damaged protein WSQ_RS05075 PF18146 Damage-inducible protein CinA KH domain WSQ_RS05075 PF00994 Probable molybdopterin binding domain WSQ_RS05080 PF01245 Ribosomal protein L19 WSQ_RS05085 PF01746 tRNA (Guanine-1)-methyltransferase WSQ_RS05090 PF01782 RimM N-terminal domain WSQ_RS05105 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WSQ_RS05105 PF01578 Cytochrome C assembly protein WSQ_RS05125 PF02542 YgbB family WSQ_RS05130 PF02542 YgbB family WSQ_RS05130 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WSQ_RS05140 PF00731 AIR carboxylase WSQ_RS05150 PF00216 Bacterial DNA-binding protein WSQ_RS05160 PF01926 50S ribosome-binding GTPase WSQ_RS05160 PF06071 Protein of unknown function (DUF933) WSQ_RS05175 PF01926 50S ribosome-binding GTPase WSQ_RS05175 PF12631 MnmE helical domain WSQ_RS05175 PF10396 GTP-binding protein TrmE N-terminus WSQ_RS05180 PF02130 Uncharacterized protein family UPF0054 WSQ_RS05190 PF12327 FtsZ family, C-terminal domain WSQ_RS05190 PF00091 Tubulin/FtsZ family, GTPase domain WSQ_RS05200 PF02075 Crossover junction endodeoxyribonuclease RuvC WSQ_RS05210 PF02441 Flavoprotein WSQ_RS05210 PF04127 DNA / pantothenate metabolism flavoprotein WSQ_RS05215 PF00270 DEAD/DEAH box helicase WSQ_RS05215 PF00271 Helicase conserved C-terminal domain WSQ_RS05215 PF17191 RecG wedge domain WSQ_RS05220 PF01370 NAD dependent epimerase/dehydratase family WSQ_RS05225 PF13537 Glutamine amidotransferase domain WSQ_RS05225 PF00156 Phosphoribosyl transferase domain WSQ_RS05230 PF01195 Peptidyl-tRNA hydrolase WSQ_RS05235 PF14693 Ribosomal protein TL5, C-terminal domain WSQ_RS05235 PF01386 Ribosomal L25p family WSQ_RS05240 PF00156 Phosphoribosyl transferase domain WSQ_RS05245 PF02254 TrkA-N domain WSQ_RS05245 PF00999 Sodium/hydrogen exchanger family WSQ_RS05255 PF03653 Uncharacterised protein family (UPF0093) WSQ_RS05260 PF02780 Transketolase, C-terminal domain WSQ_RS05260 PF02779 Transketolase, pyrimidine binding domain WSQ_RS05275 PF01523 Putative modulator of DNA gyrase WSQ_RS05290 PF00925 GTP cyclohydrolase II WSQ_RS05310 PF00925 GTP cyclohydrolase II WSQ_RS05320 PF00162 Phosphoglycerate kinase WSQ_RS05325 PF02601 Exonuclease VII, large subunit WSQ_RS05325 PF13742 OB-fold nucleic acid binding domain WSQ_RS05345 PF02355 Protein export membrane protein WSQ_RS05345 PF07549 SecD/SecF GG Motif WSQ_RS05350 PF02021 Uncharacterised protein family UPF0102 WSQ_RS05365 PF01668 SmpB protein WSQ_RS05370 PF00925 GTP cyclohydrolase II WSQ_RS05370 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WSQ_RS05375 PF03449 Transcription elongation factor, N-terminal WSQ_RS05375 PF01272 Transcription elongation factor, GreA/GreB, C-term WSQ_RS05380 PF02874 ATP synthase alpha/beta family, beta-barrel domain WSQ_RS05380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WSQ_RS05380 PF00306 ATP synthase alpha/beta chain, C terminal domain WSQ_RS05385 PF00213 ATP synthase delta (OSCP) subunit WSQ_RS05405 PF02687 FtsX-like permease family WSQ_RS05405 PF12704 MacB-like periplasmic core domain WSQ_RS05420 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE WSQ_RS05425 PF01027 Inhibitor of apoptosis-promoting Bax1 WSQ_RS05430 PF01118 Semialdehyde dehydrogenase, NAD binding domain WSQ_RS05430 PF02774 Semialdehyde dehydrogenase, dimerisation domain WSQ_RS05440 PF12169 DNA polymerase III subunits gamma and tau domain III WSQ_RS05445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WSQ_RS05445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WSQ_RS05465 PF00154 recA bacterial DNA recombination protein WSQ_RS05490 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WSQ_RS05505 PF02355 Protein export membrane protein WSQ_RS05510 PF00271 Helicase conserved C-terminal domain WSQ_RS05510 PF04851 Type III restriction enzyme, res subunit WSQ_RS05510 PF02151 UvrB/uvrC motif WSQ_RS05510 PF12344 Ultra-violet resistance protein B WSQ_RS05510 PF17757 UvrB interaction domain WSQ_RS05530 PF01327 Polypeptide deformylase WSQ_RS05535 PF01553 Acyltransferase WSQ_RS05540 PF01649 Ribosomal protein S20 WSQ_RS05545 PF01327 Polypeptide deformylase WSQ_RS05555 PF01790 Prolipoprotein diacylglyceryl transferase WSQ_RS05560 PF03023 Lipid II flippase MurJ WSQ_RS05630 PF01545 Cation efflux family WSQ_RS05645 PF01258 Prokaryotic dksA/traR C4-type zinc finger WSQ_RS05660 PF02534 Type IV secretory system Conjugative DNA transfer WSQ_RS05665 PF00437 Type II/IV secretion system protein WSQ_RS05670 PF03743 Bacterial conjugation TrbI-like protein WSQ_RS05690 PF02463 RecF/RecN/SMC N terminal domain WSQ_RS05740 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WSQ_RS05755 PF01029 NusB family WSQ_RS05785 PF01467 Cytidylyltransferase-like WSQ_RS05800 PF02540 NAD synthase WSQ_RS05800 PF00795 Carbon-nitrogen hydrolase