WSQ_RS00005 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs WSQ_RS00005 SM00475 5'-3' exonuclease WSQ_RS00005 SM00482 DNA polymerase A domain WSQ_RS00020 SM00382 ATPases associated with a variety of cellular activities WSQ_RS00075 SM00271 DnaJ molecular chaperone homology domain WSQ_RS00085 SM01207 WSQ_RS00085 WSQ_RS00105 SM01091 Transporter associated domain WSQ_RS00190 SM00382 ATPases associated with a variety of cellular activities WSQ_RS00195 SM00919 Malic enzyme, NAD binding domain WSQ_RS00195 SM01274 WSQ_RS00195 WSQ_RS00300 SM00357 Cold shock protein domain WSQ_RS00300 SM00382 ATPases associated with a variety of cellular activities WSQ_RS00300 SM00959 Rho termination factor, N-terminal domain WSQ_RS00310 SM00271 DnaJ molecular chaperone homology domain WSQ_RS00315 SM00932 Scaffold protein Nfu/NifU N terminal WSQ_RS00420 SM00116 Domain in cystathionine beta-synthase and other proteins. WSQ_RS00420 SM01240 WSQ_RS00420 WSQ_RS00440 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. WSQ_RS00460 SM00978 WSQ_RS00460 WSQ_RS00505 SM00487 DEAD-like helicases superfamily WSQ_RS00505 SM00490 helicase superfamily c-terminal domain WSQ_RS00505 SM00982 WSQ_RS00505 WSQ_RS00505 SM01058 CarD-like/TRCF domain WSQ_RS00575 SM00865 Tubulin/FtsZ family, C-terminal domain WSQ_RS00605 SM00357 Cold shock protein domain WSQ_RS00610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WSQ_RS00610 SM00387 Histidine kinase-like ATPases WSQ_RS00610 SM00388 His Kinase A (phosphoacceptor) domain WSQ_RS00615 SM00474 3'-5' exonuclease WSQ_RS00620 SM00292 breast cancer carboxy-terminal domain WSQ_RS00620 SM00532 Ligase N family WSQ_RS00660 SM00072 Guanylate kinase homologues. WSQ_RS00695 SM01219 WSQ_RS00695 WSQ_RS00700 SM00382 ATPases associated with a variety of cellular activities WSQ_RS00745 SM00382 ATPases associated with a variety of cellular activities WSQ_RS00760 SM00072 Guanylate kinase homologues. WSQ_RS00835 SM00749 bacterial OsmY and nodulation domain WSQ_RS00850 SM00382 ATPases associated with a variety of cellular activities WSQ_RS00850 SM00448 cheY-homologous receiver domain WSQ_RS00940 SM00729 Elongator protein 3, MiaB family, Radical SAM WSQ_RS00940 SM00876 Biotin and Thiamin Synthesis associated domain WSQ_RS00965 SM01228 WSQ_RS00965 WSQ_RS00970 SM01211 WSQ_RS00970 WSQ_RS01020 SM00382 ATPases associated with a variety of cellular activities WSQ_RS01020 SM01086 C-terminal, D2-small domain, of ClpB protein WSQ_RS01045 SM00883 Chaperonin 10 Kd subunit WSQ_RS01080 SM00851 MGS-like domain WSQ_RS01080 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WSQ_RS01090 SM00382 ATPases associated with a variety of cellular activities WSQ_RS01095 SM00829 Enoylreductase WSQ_RS01110 SM00244 prohibitin homologues WSQ_RS01165 SM00316 Ribosomal protein S1-like RNA-binding domain WSQ_RS01175 SM00967 RNA 2'-O ribose methyltransferase substrate binding WSQ_RS01195 SM01403 WSQ_RS01195 WSQ_RS01215 SM01382 WSQ_RS01215 WSQ_RS01215 SM01383 WSQ_RS01215 WSQ_RS01230 SM00322 K homology RNA-binding domain WSQ_RS01250 SM01374 WSQ_RS01250 WSQ_RS01255 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. WSQ_RS01315 SM00662 RNA polymerases D WSQ_RS01325 SM00873 B3/4 domain WSQ_RS01325 SM00874 tRNA synthetase B5 domain WSQ_RS01325 SM00896 Ferredoxin-fold anticodon binding domain WSQ_RS01350 SM00903 Flavin reductase like domain WSQ_RS01355 SM00382 ATPases associated with a variety of cellular activities WSQ_RS01405 SM00861 Transketolase, pyrimidine binding domain WSQ_RS01435 SM00732 Likely ribonuclease with RNase H fold. WSQ_RS01440 SM00788 Adenylosuccinate synthetase WSQ_RS01460 SM00861 Transketolase, pyrimidine binding domain WSQ_RS01510 SM00382 ATPases associated with a variety of cellular activities WSQ_RS01510 SM00962 SRP54-type protein, GTPase domain WSQ_RS01510 SM00963 SRP54-type protein, helical bundle domain WSQ_RS01550 SM00487 DEAD-like helicases superfamily WSQ_RS01550 SM00490 helicase superfamily c-terminal domain WSQ_RS01575 SM00878 Biotin carboxylase C-terminal domain WSQ_RS01595 SM00729 Elongator protein 3, MiaB family, Radical SAM WSQ_RS01620 SM00382 ATPases associated with a variety of cellular activities WSQ_RS01665 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain WSQ_RS01715 SM00564 beta-propeller repeat WSQ_RS01815 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain WSQ_RS01815 SM01232 WSQ_RS01815 WSQ_RS01835 SM00382 ATPases associated with a variety of cellular activities WSQ_RS01840 SM00937 WSQ_RS01840 WSQ_RS01900 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WSQ_RS01960 SM00316 Ribosomal protein S1-like RNA-binding domain WSQ_RS01960 SM00322 K homology RNA-binding domain WSQ_RS01985 SM00382 ATPases associated with a variety of cellular activities WSQ_RS01985 SM01086 C-terminal, D2-small domain, of ClpB protein WSQ_RS01990 SM00838 Elongation factor G C-terminus WSQ_RS02045 SM00937 WSQ_RS02045 WSQ_RS02055 SM00845 GatB domain WSQ_RS02075 SM00382 ATPases associated with a variety of cellular activities WSQ_RS02075 SM00760 Bacterial dnaA protein helix-turn-helix domain WSQ_RS02090 SM00937 WSQ_RS02090 WSQ_RS02140 SM00382 ATPases associated with a variety of cellular activities WSQ_RS02150 SM00116 Domain in cystathionine beta-synthase and other proteins. WSQ_RS02150 SM00924 MgtE intracellular N domain WSQ_RS02210 SM01409 WSQ_RS02210 WSQ_RS02250 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family WSQ_RS02330 SM00841 Elongation factor P, C-terminal WSQ_RS02330 SM01185 WSQ_RS02330 WSQ_RS02340 SM00363 S4 RNA-binding domain WSQ_RS02345 SM00267 diguanylate cyclase WSQ_RS02345 SM00448 cheY-homologous receiver domain WSQ_RS02370 SM00840 WSQ_RS02370 WSQ_RS02410 SM00400 zinc finger WSQ_RS02410 SM00493 WSQ_RS02410 WSQ_RS02415 SM00534 ATPase domain of DNA mismatch repair MUTS family WSQ_RS02450 SM00387 Histidine kinase-like ATPases WSQ_RS02450 SM00388 His Kinase A (phosphoacceptor) domain WSQ_RS02450 SM00448 cheY-homologous receiver domain WSQ_RS02490 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain WSQ_RS02490 SM00437 Bacterial DNA topoisomerase I DNA-binding domain WSQ_RS02490 SM00493 WSQ_RS02490 WSQ_RS02575 SM00650 Ribosomal RNA adenine dimethylases WSQ_RS02605 SM00905 Dihydroneopterin aldolase WSQ_RS02755 SM00822 WSQ_RS02755 WSQ_RS02855 SM01192 WSQ_RS02855 WSQ_RS02855 SM01193 WSQ_RS02855 WSQ_RS02880 SM00836 DALR anticodon binding domain WSQ_RS02880 SM01016 Arginyl tRNA synthetase N terminal dom WSQ_RS02905 SM00248 ankyrin repeats WSQ_RS02915 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WSQ_RS02925 SM00387 Histidine kinase-like ATPases WSQ_RS02925 SM00433 TopoisomeraseII WSQ_RS02970 SM00479 WSQ_RS02970 WSQ_RS03015 SM00248 ankyrin repeats WSQ_RS03055 SM00382 ATPases associated with a variety of cellular activities WSQ_RS03080 SM00838 Elongation factor G C-terminus WSQ_RS03090 SM00316 Ribosomal protein S1-like RNA-binding domain WSQ_RS03090 SM00322 K homology RNA-binding domain WSQ_RS03095 SM01387 WSQ_RS03095 WSQ_RS03145 SM00382 ATPases associated with a variety of cellular activities WSQ_RS03150 SM00411 bacterial (prokaryotic) histone like domain WSQ_RS03365 SM01004 Delta-aminolevulinic acid dehydratase WSQ_RS03385 SM00533 DNA-binding domain of DNA mismatch repair MUTS family WSQ_RS03385 SM00534 ATPase domain of DNA mismatch repair MUTS family WSQ_RS03410 SM00861 Transketolase, pyrimidine binding domain WSQ_RS03420 SM00998 Adenylosuccinate lyase C-terminus WSQ_RS03465 SM00729 Elongator protein 3, MiaB family, Radical SAM WSQ_RS03480 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WSQ_RS03480 SM00465 GIY-YIG type nucleases (URI domain) WSQ_RS03490 SM00387 Histidine kinase-like ATPases WSQ_RS03510 SM00478 endonuclease III WSQ_RS03510 SM00525 WSQ_RS03510 WSQ_RS03515 SM00434 DNA Topoisomerase IV WSQ_RS03635 SM00248 ankyrin repeats WSQ_RS03645 SM00825 Beta-ketoacyl synthase WSQ_RS03680 SM00853 MutL C terminal dimerisation domain WSQ_RS03680 SM01340 WSQ_RS03680 WSQ_RS03705 SM00387 Histidine kinase-like ATPases WSQ_RS03705 SM00388 His Kinase A (phosphoacceptor) domain WSQ_RS03730 SM00843 WSQ_RS03730 WSQ_RS03740 SM01091 Transporter associated domain WSQ_RS03755 SM00450 Rhodanese Homology Domain WSQ_RS03780 SM00382 ATPases associated with a variety of cellular activities WSQ_RS03780 SM00464 Found in ATP-dependent protease La (LON) WSQ_RS03785 SM00382 ATPases associated with a variety of cellular activities WSQ_RS03785 SM00994 ClpX C4-type zinc finger WSQ_RS03785 SM01086 C-terminal, D2-small domain, of ClpB protein WSQ_RS03850 SM00382 ATPases associated with a variety of cellular activities WSQ_RS03865 SM00382 ATPases associated with a variety of cellular activities WSQ_RS03875 SM00493 WSQ_RS03875 WSQ_RS03880 SM00363 S4 RNA-binding domain WSQ_RS03880 SM01390 WSQ_RS03880 WSQ_RS03935 SM00481 DNA polymerase alpha chain like domain WSQ_RS04010 SM00663 RNA polymerase I subunit A N-terminus WSQ_RS04035 SM00649 Ribosomal protein L11/L12 WSQ_RS04040 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. WSQ_RS04060 SM00838 Elongation factor G C-terminus WSQ_RS04060 SM00889 Elongation factor G, domain IV WSQ_RS04075 SM00849 Metallo-beta-lactamase superfamily WSQ_RS04130 SM00881 CoA binding domain WSQ_RS04145 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain WSQ_RS04155 SM01230 WSQ_RS04155 WSQ_RS04160 SM00849 Metallo-beta-lactamase superfamily WSQ_RS04200 SM00357 Cold shock protein domain WSQ_RS04200 SM00382 ATPases associated with a variety of cellular activities WSQ_RS04200 SM00959 Rho termination factor, N-terminal domain WSQ_RS04210 SM00382 ATPases associated with a variety of cellular activities WSQ_RS04210 SM01086 C-terminal, D2-small domain, of ClpB protein WSQ_RS04285 SM01209 WSQ_RS04285 WSQ_RS04285 SM01210 WSQ_RS04285 WSQ_RS04290 SM01323 WSQ_RS04290 WSQ_RS04310 SM00480 DNA polymerase III beta subunit WSQ_RS04315 SM00474 3'-5' exonuclease WSQ_RS04320 SM00448 cheY-homologous receiver domain WSQ_RS04320 SM00862 Transcriptional regulatory protein, C terminal WSQ_RS04325 SM00530 Helix-turn-helix XRE-family like proteins WSQ_RS04375 SM01400 WSQ_RS04375 WSQ_RS04545 SM00244 prohibitin homologues WSQ_RS04550 SM00244 prohibitin homologues WSQ_RS04555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. WSQ_RS04560 SM00358 Double-stranded RNA binding motif WSQ_RS04560 SM00535 Ribonuclease III family WSQ_RS04620 SM00904 Riboflavin kinase WSQ_RS04640 SM00842 Cell division protein FtsA WSQ_RS04650 SM01329 WSQ_RS04650 WSQ_RS04700 SM00957 SecA DEAD-like domain WSQ_RS04700 SM00958 SecA preprotein cross-linking domain WSQ_RS04705 SM00382 ATPases associated with a variety of cellular activities WSQ_RS04725 SM00842 Cell division protein FtsA WSQ_RS04820 SM00798 AICARFT/IMPCHase bienzyme WSQ_RS04820 SM00851 MGS-like domain WSQ_RS04830 SM00935 Outer membrane protein (OmpH-like) WSQ_RS04840 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. WSQ_RS04855 SM00936 Penicillin-binding protein 5, C-terminal domain WSQ_RS04875 SM00562 WSQ_RS04875 WSQ_RS04880 SM00530 Helix-turn-helix XRE-family like proteins WSQ_RS04920 SM00382 ATPases associated with a variety of cellular activities WSQ_RS04920 SM00962 SRP54-type protein, GTPase domain WSQ_RS04920 SM00963 SRP54-type protein, helical bundle domain WSQ_RS05005 SM01230 WSQ_RS05005 WSQ_RS05050 SM01133 WSQ_RS05050 WSQ_RS05070 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain WSQ_RS05140 SM01001 AIR carboxylase WSQ_RS05150 SM00411 bacterial (prokaryotic) histone like domain WSQ_RS05190 SM00864 Tubulin/FtsZ family, GTPase domain WSQ_RS05190 SM00865 Tubulin/FtsZ family, C-terminal domain WSQ_RS05215 SM00487 DEAD-like helicases superfamily WSQ_RS05215 SM00490 helicase superfamily c-terminal domain WSQ_RS05260 SM00861 Transketolase, pyrimidine binding domain WSQ_RS05300 SM00028 Tetratricopeptide repeats WSQ_RS05430 SM00859 Semialdehyde dehydrogenase, NAD binding domain WSQ_RS05440 SM00382 ATPases associated with a variety of cellular activities WSQ_RS05445 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WSQ_RS05465 SM00382 ATPases associated with a variety of cellular activities WSQ_RS05510 SM00487 DEAD-like helicases superfamily WSQ_RS05510 SM00490 helicase superfamily c-terminal domain WSQ_RS05525 SM00986 Uracil DNA glycosylase superfamily WSQ_RS05525 SM00987 UreE urease accessory protein, C-terminal domain WSQ_RS05535 SM00563 Phosphate acyltransferases WSQ_RS05720 SM00248 ankyrin repeats