ACH33_RS00025	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS00030	SM00091	PAS domain
ACH33_RS00030	SM00387	Histidine kinase-like ATPases
ACH33_RS00030	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS00115	SM00091	PAS domain
ACH33_RS00115	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS00135	SM00411	bacterial (prokaryotic) histone like domain
ACH33_RS00200	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS00220	SM00704	CDGSH-type zinc finger. Function unknown.
ACH33_RS00285	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS00315	SM00822	ACH33_RS00315
ACH33_RS00325	SM00936	Penicillin-binding protein 5, C-terminal domain 
ACH33_RS00330	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACH33_RS00330	SM01240	ACH33_RS00330
ACH33_RS00355	SM00434	DNA Topoisomerase IV
ACH33_RS00360	SM00387	Histidine kinase-like ATPases
ACH33_RS00360	SM00433	TopoisomeraseII
ACH33_RS00380	SM00480	DNA polymerase III beta subunit
ACH33_RS00385	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS00385	SM00760	Bacterial dnaA protein helix-turn-helix domain
ACH33_RS00405	SM00393	Putative single-stranded nucleic acids-binding domain
ACH33_RS00405	SM01245	ACH33_RS00405
ACH33_RS00415	SM01228	ACH33_RS00415
ACH33_RS00430	SM00470	ParB-like nuclease domain
ACH33_RS00440	SM00470	ParB-like nuclease domain
ACH33_RS00495	SM00267	diguanylate cyclase
ACH33_RS00510	SM00788	Adenylosuccinate synthetase
ACH33_RS00515	SM00257	Lysin motif
ACH33_RS00515	SM01208	ACH33_RS00515
ACH33_RS00520	SM00448	cheY-homologous receiver domain
ACH33_RS00520	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS00525	SM00091	PAS domain
ACH33_RS00525	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS00525	SM00387	Histidine kinase-like ATPases
ACH33_RS00525	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS00540	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS00545	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACH33_RS00560	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS00615	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS00615	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS00630	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ACH33_RS00725	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS00750	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACH33_RS00790	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS00795	SM00062	Bacterial periplasmic substrate-binding proteins
ACH33_RS00795	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ACH33_RS00930	SM01118	ACH33_RS00930
ACH33_RS01005	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS01025	SM00346	helix_turn_helix isocitrate lyase regulation
ACH33_RS01030	SM00796	Allophanate hydrolase subunit 1
ACH33_RS01035	SM00797	Allophanate hydrolase subunit 2
ACH33_RS01080	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ACH33_RS01095	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS01110	SM00028	Tetratricopeptide repeats
ACH33_RS01110	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS01150	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACH33_RS01185	SM00836	DALR anticodon binding domain
ACH33_RS01185	SM01016	Arginyl tRNA synthetase N terminal dom
ACH33_RS01190	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS01225	SM00857	Resolvase, N terminal domain
ACH33_RS01320	SM00448	cheY-homologous receiver domain
ACH33_RS01345	SM00357	Cold shock protein domain
ACH33_RS01345	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS01345	SM00959	Rho termination factor, N-terminal domain
ACH33_RS01380	SM00937	ACH33_RS01380
ACH33_RS01420	SM00226	Low molecular weight phosphatase family
ACH33_RS01425	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS01425	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS01515	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS01525	SM00226	Low molecular weight phosphatase family
ACH33_RS01640	SM00344	helix_turn_helix ASNC type
ACH33_RS01675	SM00984	UDP binding domain
ACH33_RS01705	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS01740	SM00635	Bacterial Ig-like domain 2
ACH33_RS01795	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS01910	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACH33_RS01910	SM00245	tail specific protease
ACH33_RS01925	SM00387	Histidine kinase-like ATPases
ACH33_RS01930	SM00421	helix_turn_helix, Lux Regulon
ACH33_RS01930	SM00448	cheY-homologous receiver domain
ACH33_RS01940	SM00028	Tetratricopeptide repeats
ACH33_RS01950	SM00487	DEAD-like helicases superfamily
ACH33_RS01950	SM00490	helicase superfamily c-terminal domain
ACH33_RS02075	SM00357	Cold shock protein domain
ACH33_RS02095	SM00957	SecA DEAD-like domain
ACH33_RS02095	SM00958	SecA preprotein cross-linking domain
ACH33_RS02100	SM00937	ACH33_RS02100
ACH33_RS02110	SM00861	Transketolase, pyrimidine binding domain
ACH33_RS02120	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ACH33_RS02135	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ACH33_RS02140	SM00851	MGS-like domain
ACH33_RS02140	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ACH33_RS02140	SM01209	ACH33_RS02140
ACH33_RS02175	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS02190	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACH33_RS02190	SM00245	tail specific protease
ACH33_RS02195	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACH33_RS02205	SM00487	DEAD-like helicases superfamily
ACH33_RS02205	SM00490	helicase superfamily c-terminal domain
ACH33_RS02210	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS02300	SM00028	Tetratricopeptide repeats
ACH33_RS02310	SM01321	ACH33_RS02310
ACH33_RS02375	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ACH33_RS02395	SM01192	ACH33_RS02395
ACH33_RS02395	SM01193	ACH33_RS02395
ACH33_RS02420	SM00316	Ribosomal protein S1-like RNA-binding domain
ACH33_RS02420	SM00357	Cold shock protein domain
ACH33_RS02420	SM00955	ACH33_RS02420
ACH33_RS02435	SM01321	ACH33_RS02435
ACH33_RS02485	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACH33_RS02490	SM00448	cheY-homologous receiver domain
ACH33_RS02490	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS02495	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS02495	SM00387	Histidine kinase-like ATPases
ACH33_RS02495	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS02525	SM00470	ParB-like nuclease domain
ACH33_RS02540	SM01321	ACH33_RS02540
ACH33_RS02580	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS02595	SM00318	Staphylococcal nuclease homologues
ACH33_RS02630	SM00919	Malic enzyme, NAD binding domain
ACH33_RS02630	SM01274	ACH33_RS02630
ACH33_RS02635	SM00829	Enoylreductase
ACH33_RS02655	SM00346	helix_turn_helix isocitrate lyase regulation
ACH33_RS02670	SM00244	prohibitin homologues
ACH33_RS02675	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACH33_RS02680	SM01018	B12 binding domain
ACH33_RS02705	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS02715	SM00028	Tetratricopeptide repeats
ACH33_RS02765	SM00493	ACH33_RS02765
ACH33_RS02810	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ACH33_RS02810	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ACH33_RS02835	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS02855	SM00646	ACH33_RS02855
ACH33_RS02890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS02890	SM00895	ACH33_RS02890
ACH33_RS02915	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ACH33_RS02975	SM00855	Phosphoglycerate mutase family
ACH33_RS03005	SM00155	Phospholipase D. Active site motifs.
ACH33_RS03070	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ACH33_RS03100	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS03110	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ACH33_RS03110	SM00267	diguanylate cyclase
ACH33_RS03125	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS03185	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS03235	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACH33_RS03285	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACH33_RS03320	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
ACH33_RS03330	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS03330	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS03355	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS03385	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACH33_RS03385	SM00420	helix_turn_helix, Deoxyribose operon repressor
ACH33_RS03550	SM00917	LeuA allosteric (dimerisation) domain
ACH33_RS03555	SM01329	ACH33_RS03555
ACH33_RS03565	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS03605	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ACH33_RS03620	SM00873	B3/4 domain
ACH33_RS03620	SM00874	tRNA synthetase B5 domain
ACH33_RS03620	SM00896	Ferredoxin-fold anticodon binding domain
ACH33_RS03645	SM00463	Small MutS-related domain
ACH33_RS03645	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ACH33_RS03645	SM00534	ATPase domain of DNA mismatch repair MUTS family
ACH33_RS03655	SM00984	UDP binding domain
ACH33_RS03670	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS03770	SM00893	Electron transfer flavoprotein domain
ACH33_RS03775	SM00893	Electron transfer flavoprotein domain
ACH33_RS03785	SM00465	GIY-YIG type nucleases (URI domain)
ACH33_RS03820	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS03820	SM00876	Biotin and Thiamin Synthesis associated domain
ACH33_RS03835	SM00421	helix_turn_helix, Lux Regulon
ACH33_RS03850	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS03865	SM00861	Transketolase, pyrimidine binding domain
ACH33_RS03880	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS03885	SM00829	Enoylreductase
ACH33_RS03900	SM00909	Sporulation and spore germination
ACH33_RS03935	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS03935	SM00994	ClpX C4-type zinc finger
ACH33_RS03935	SM01086	C-terminal, D2-small domain, of ClpB protein
ACH33_RS03940	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS03945	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS03945	SM00464	Found in ATP-dependent protease La (LON)
ACH33_RS03990	SM01004	Delta-aminolevulinic acid dehydratase
ACH33_RS04000	SM00257	Lysin motif
ACH33_RS04045	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04065	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS04065	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS04070	SM00327	von Willebrand factor (vWF) type A domain
ACH33_RS04070	SM00635	Bacterial Ig-like domain 2
ACH33_RS04100	SM01208	ACH33_RS04100
ACH33_RS04105	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04110	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04200	SM00316	Ribosomal protein S1-like RNA-binding domain
ACH33_RS04275	SM00257	Lysin motif
ACH33_RS04285	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACH33_RS04290	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04305	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACH33_RS04330	SM01323	ACH33_RS04330
ACH33_RS04385	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACH33_RS04385	SM00954	Region found in RelA / SpoT proteins
ACH33_RS04395	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS04425	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04455	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS04455	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS04475	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ACH33_RS04485	SM00732	Likely ribonuclease with RNase H fold.
ACH33_RS04530	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04545	SM00422	helix_turn_helix, mercury resistance
ACH33_RS04590	SM00825	Beta-ketoacyl synthase
ACH33_RS04595	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04665	SM01329	ACH33_RS04665
ACH33_RS04670	SM00091	PAS domain
ACH33_RS04670	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04750	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04765	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACH33_RS04775	SM00257	Lysin motif
ACH33_RS04780	SM00062	Bacterial periplasmic substrate-binding proteins
ACH33_RS04780	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ACH33_RS04780	SM00387	Histidine kinase-like ATPases
ACH33_RS04780	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS04785	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04785	SM00448	cheY-homologous receiver domain
ACH33_RS04810	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS04825	SM00857	Resolvase, N terminal domain
ACH33_RS04830	SM00857	Resolvase, N terminal domain
ACH33_RS04865	SM01321	ACH33_RS04865
ACH33_RS04895	SM00857	Resolvase, N terminal domain
ACH33_RS04935	SM00257	Lysin motif
ACH33_RS05010	SM00257	Lysin motif
ACH33_RS05010	SM00631	ACH33_RS05010
ACH33_RS05040	SM00062	Bacterial periplasmic substrate-binding proteins
ACH33_RS05040	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ACH33_RS05050	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS05070	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ACH33_RS05090	SM00861	Transketolase, pyrimidine binding domain
ACH33_RS05120	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS05120	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS05125	SM00062	Bacterial periplasmic substrate-binding proteins
ACH33_RS05125	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ACH33_RS05130	SM00448	cheY-homologous receiver domain
ACH33_RS05130	SM00850	LytTr DNA-binding domain
ACH33_RS05135	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ACH33_RS05135	SM00387	Histidine kinase-like ATPases
ACH33_RS05165	SM01103	ACH33_RS05165
ACH33_RS05175	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACH33_RS05205	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACH33_RS05230	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS05280	SM00838	Elongation factor G C-terminus
ACH33_RS05285	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS05310	SM00271	DnaJ molecular chaperone homology domain
ACH33_RS05325	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS05330	SM00091	PAS domain
ACH33_RS05330	SM00387	Histidine kinase-like ATPases
ACH33_RS05335	SM00448	cheY-homologous receiver domain
ACH33_RS05355	SM01133	ACH33_RS05355
ACH33_RS05435	SM00387	Histidine kinase-like ATPases
ACH33_RS05440	SM00448	cheY-homologous receiver domain
ACH33_RS05480	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACH33_RS05520	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACH33_RS05535	SM00400	zinc finger
ACH33_RS05535	SM00493	ACH33_RS05535
ACH33_RS05595	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS05595	SM00854	Bacterial capsule synthesis protein PGA_cap
ACH33_RS05735	SM00342	helix_turn_helix, arabinose operon control protein
ACH33_RS05760	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS05760	SM00895	ACH33_RS05760
ACH33_RS05785	SM01321	ACH33_RS05785
ACH33_RS05805	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS05965	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS06010	SM00984	UDP binding domain
ACH33_RS06050	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACH33_RS06105	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS06155	SM00487	DEAD-like helicases superfamily
ACH33_RS06155	SM00490	helicase superfamily c-terminal domain
ACH33_RS06245	SM00091	PAS domain
ACH33_RS06245	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS06255	SM00861	Transketolase, pyrimidine binding domain
ACH33_RS06280	SM00529	Helix-turn-helix diphteria tox regulatory element
ACH33_RS06315	SM00841	Elongation factor P, C-terminal
ACH33_RS06315	SM01185	ACH33_RS06315
ACH33_RS06330	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS06375	SM00878	Biotin carboxylase C-terminal domain
ACH33_RS06425	SM00861	Transketolase, pyrimidine binding domain
ACH33_RS06430	SM00363	S4 RNA-binding domain
ACH33_RS06455	SM00448	cheY-homologous receiver domain
ACH33_RS06465	SM00481	DNA polymerase alpha chain like domain
ACH33_RS06505	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACH33_RS06570	SM00091	PAS domain
ACH33_RS06570	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACH33_RS06570	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS06590	SM00670	Large family of predicted nucleotide-binding domains
ACH33_RS06595	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS06615	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACH33_RS06625	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ACH33_RS06625	SM00475	5'-3' exonuclease
ACH33_RS06640	SM00878	Biotin carboxylase C-terminal domain
ACH33_RS06670	SM00996	S-adenosyl-L-homocysteine hydrolase
ACH33_RS06670	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ACH33_RS06690	SM00740	ACH33_RS06690
ACH33_RS06695	SM00740	ACH33_RS06695
ACH33_RS06755	SM00842	Cell division protein FtsA
ACH33_RS06760	SM00864	Tubulin/FtsZ family, GTPase domain
ACH33_RS06760	SM00865	Tubulin/FtsZ family, C-terminal domain
ACH33_RS06780	SM00062	Bacterial periplasmic substrate-binding proteins
ACH33_RS06780	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ACH33_RS06810	SM00363	S4 RNA-binding domain
ACH33_RS06830	SM00363	S4 RNA-binding domain
ACH33_RS06850	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ACH33_RS06855	SM00851	MGS-like domain
ACH33_RS06855	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ACH33_RS06870	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ACH33_RS06890	SM00831	Cation transporter/ATPase, N-terminus
ACH33_RS06910	SM00072	Guanylate kinase homologues.
ACH33_RS06915	SM01409	ACH33_RS06915
ACH33_RS06925	SM00487	DEAD-like helicases superfamily
ACH33_RS06925	SM00490	helicase superfamily c-terminal domain
ACH33_RS06950	SM00331	Sigma factor PP2C-like phosphatases
ACH33_RS06950	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ACH33_RS06955	SM00220	Serine/Threonine protein kinases, catalytic domain
ACH33_RS06955	SM00740	ACH33_RS06955
ACH33_RS06985	SM00487	DEAD-like helicases superfamily
ACH33_RS06985	SM00490	helicase superfamily c-terminal domain
ACH33_RS07015	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACH33_RS07060	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ACH33_RS07065	SM00822	ACH33_RS07065
ACH33_RS07075	SM00825	Beta-ketoacyl synthase
ACH33_RS07080	SM00358	Double-stranded RNA binding motif
ACH33_RS07080	SM00535	Ribonuclease III family
ACH33_RS07085	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS07090	SM00968	SMC proteins Flexible Hinge Domain
ACH33_RS07095	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS07095	SM00962	SRP54-type protein, GTPase domain
ACH33_RS07095	SM00963	SRP54-type protein, helical bundle domain
ACH33_RS07105	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS07105	SM00962	SRP54-type protein, GTPase domain
ACH33_RS07105	SM00963	SRP54-type protein, helical bundle domain
ACH33_RS07185	SM00881	CoA binding domain
ACH33_RS07195	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ACH33_RS07195	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ACH33_RS07195	SM00493	ACH33_RS07195
ACH33_RS07215	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS07215	SM01086	C-terminal, D2-small domain, of ClpB protein
ACH33_RS07255	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS07310	SM00448	cheY-homologous receiver domain
ACH33_RS07345	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS07345	SM00962	SRP54-type protein, GTPase domain
ACH33_RS07355	SM00448	cheY-homologous receiver domain
ACH33_RS07360	SM00073	Histidine Phosphotransfer domain
ACH33_RS07360	SM00260	Two component signalling adaptor domain
ACH33_RS07360	SM00387	Histidine kinase-like ATPases
ACH33_RS07360	SM01231	ACH33_RS07360
ACH33_RS07365	SM00260	Two component signalling adaptor domain
ACH33_RS07440	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACH33_RS07450	SM00479	ACH33_RS07450
ACH33_RS07450	SM00481	DNA polymerase alpha chain like domain
ACH33_RS07460	SM00316	Ribosomal protein S1-like RNA-binding domain
ACH33_RS07460	SM00322	K homology RNA-binding domain
ACH33_RS07495	SM00904	Riboflavin kinase
ACH33_RS07500	SM01387	ACH33_RS07500
ACH33_RS07505	SM00316	Ribosomal protein S1-like RNA-binding domain
ACH33_RS07505	SM00322	K homology RNA-binding domain
ACH33_RS07540	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ACH33_RS07550	SM01130	ACH33_RS07550
ACH33_RS07555	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS07575	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS07590	SM01321	ACH33_RS07590
ACH33_RS07645	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS07650	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS07665	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS07730	SM01040	BRO family, N-terminal domain
ACH33_RS07775	SM00470	ParB-like nuclease domain
ACH33_RS08030	SM00387	Histidine kinase-like ATPases
ACH33_RS08030	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS08035	SM00825	Beta-ketoacyl synthase
ACH33_RS08160	SM00646	ACH33_RS08160
ACH33_RS08210	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS08210	SM00930	ACH33_RS08210
ACH33_RS08250	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS08275	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS08290	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS08335	SM00793	Accessory gene regulator B
ACH33_RS08340	SM00387	Histidine kinase-like ATPases
ACH33_RS08405	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACH33_RS08420	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS08440	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS08515	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS08520	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS08545	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS08590	SM01040	BRO family, N-terminal domain
ACH33_RS08770	SM00448	cheY-homologous receiver domain
ACH33_RS08770	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS08775	SM00387	Histidine kinase-like ATPases
ACH33_RS08775	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS08780	SM00796	Allophanate hydrolase subunit 1
ACH33_RS08785	SM00797	Allophanate hydrolase subunit 2
ACH33_RS08795	SM00878	Biotin carboxylase C-terminal domain
ACH33_RS08805	SM00091	PAS domain
ACH33_RS08805	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS08810	SM00796	Allophanate hydrolase subunit 1
ACH33_RS08815	SM00797	Allophanate hydrolase subunit 2
ACH33_RS08825	SM00984	UDP binding domain
ACH33_RS08895	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ACH33_RS08915	SM00342	helix_turn_helix, arabinose operon control protein
ACH33_RS08955	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS08980	SM00420	helix_turn_helix, Deoxyribose operon repressor
ACH33_RS08980	SM01134	ACH33_RS08980
ACH33_RS09100	SM00260	Two component signalling adaptor domain
ACH33_RS09100	SM00448	cheY-homologous receiver domain
ACH33_RS09125	SM00422	helix_turn_helix, mercury resistance
ACH33_RS09130	SM01230	ACH33_RS09130
ACH33_RS09135	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS09135	SM00387	Histidine kinase-like ATPases
ACH33_RS09135	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS09140	SM00448	cheY-homologous receiver domain
ACH33_RS09140	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS09175	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS09190	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS09215	SM00421	helix_turn_helix, Lux Regulon
ACH33_RS09215	SM00448	cheY-homologous receiver domain
ACH33_RS09220	SM00710	Parallel beta-helix repeats
ACH33_RS09235	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS09250	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS09285	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS09295	SM00014	Acid phosphatase homologues
ACH33_RS09375	SM00740	ACH33_RS09375
ACH33_RS09395	SM00852	Probable molybdopterin binding domain
ACH33_RS09420	SM00882	Coenzyme A transferase
ACH33_RS09425	SM00882	Coenzyme A transferase
ACH33_RS09445	SM00852	Probable molybdopterin binding domain
ACH33_RS09485	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS09510	SM00518	AP endonuclease family 2
ACH33_RS09520	SM01350	ACH33_RS09520
ACH33_RS09525	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ACH33_RS09590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS09600	SM00479	ACH33_RS09600
ACH33_RS09605	SM00318	Staphylococcal nuclease homologues
ACH33_RS09660	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS09670	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACH33_RS09680	SM00226	Low molecular weight phosphatase family
ACH33_RS09690	SM00257	Lysin motif
ACH33_RS09695	SM00857	Resolvase, N terminal domain
ACH33_RS09715	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS09715	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS09745	SM00085	Phospholipase A2
ACH33_RS09860	SM00822	ACH33_RS09860
ACH33_RS09875	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS09875	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS09885	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS09905	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ACH33_RS09905	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ACH33_RS09905	SM00493	ACH33_RS09905
ACH33_RS09925	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ACH33_RS09925	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ACH33_RS09945	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS09945	SM00866	ACH33_RS09945
ACH33_RS09950	SM00226	Low molecular weight phosphatase family
ACH33_RS09960	SM00822	ACH33_RS09960
ACH33_RS10045	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS10120	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS10120	SM00895	ACH33_RS10120
ACH33_RS10125	SM00646	ACH33_RS10125
ACH33_RS10165	SM00854	Bacterial capsule synthesis protein PGA_cap
ACH33_RS10180	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS10200	SM00347	helix_turn_helix multiple antibiotic resistance protein
ACH33_RS10265	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS10350	SM00877	ACH33_RS10350
ACH33_RS10365	SM00877	ACH33_RS10365
ACH33_RS10375	SM00877	ACH33_RS10375
ACH33_RS10395	SM00448	cheY-homologous receiver domain
ACH33_RS10395	SM01012	ACH33_RS10395
ACH33_RS10400	SM00387	Histidine kinase-like ATPases
ACH33_RS10410	SM00877	ACH33_RS10410
ACH33_RS10425	SM00861	Transketolase, pyrimidine binding domain
ACH33_RS10470	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS10475	SM00387	Histidine kinase-like ATPases
ACH33_RS10480	SM00448	cheY-homologous receiver domain
ACH33_RS10480	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS10535	SM00487	DEAD-like helicases superfamily
ACH33_RS10535	SM00488	ACH33_RS10535
ACH33_RS10535	SM00491	ACH33_RS10535
ACH33_RS10560	SM00028	Tetratricopeptide repeats
ACH33_RS10570	SM00028	Tetratricopeptide repeats
ACH33_RS10620	SM00966	SpoVT / AbrB like domain 
ACH33_RS10635	SM00854	Bacterial capsule synthesis protein PGA_cap
ACH33_RS10670	SM00316	Ribosomal protein S1-like RNA-binding domain
ACH33_RS10675	SM00434	DNA Topoisomerase IV
ACH33_RS10680	SM00387	Histidine kinase-like ATPases
ACH33_RS10680	SM00433	TopoisomeraseII
ACH33_RS10705	SM00091	PAS domain
ACH33_RS10705	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS10725	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ACH33_RS10725	SM00387	Histidine kinase-like ATPases
ACH33_RS10725	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS10730	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS10730	SM00448	cheY-homologous receiver domain
ACH33_RS10765	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS10780	SM00257	Lysin motif
ACH33_RS10825	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS10830	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS10840	SM00857	Resolvase, N terminal domain
ACH33_RS10855	SM00014	Acid phosphatase homologues
ACH33_RS10865	SM00646	ACH33_RS10865
ACH33_RS10875	SM00478	endonuclease III
ACH33_RS10875	SM00525	ACH33_RS10875
ACH33_RS10920	SM00316	Ribosomal protein S1-like RNA-binding domain
ACH33_RS10935	SM00850	LytTr DNA-binding domain
ACH33_RS10940	SM00909	Sporulation and spore germination
ACH33_RS10950	SM00478	endonuclease III
ACH33_RS10970	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS10970	SM00843	ACH33_RS10970
ACH33_RS10985	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS11035	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS11120	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS11125	SM00870	ACH33_RS11125
ACH33_RS11140	SM01234	ACH33_RS11140
ACH33_RS11145	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS11180	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS11215	SM00871	Bacterial transcription activator, effector binding domain
ACH33_RS11290	SM01236	ACH33_RS11290
ACH33_RS11335	SM01130	ACH33_RS11335
ACH33_RS11360	SM00091	PAS domain
ACH33_RS11360	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS11385	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS11385	SM00387	Histidine kinase-like ATPases
ACH33_RS11385	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS11390	SM00448	cheY-homologous receiver domain
ACH33_RS11390	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS11470	SM00829	Enoylreductase
ACH33_RS11590	SM01236	ACH33_RS11590
ACH33_RS11660	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS11670	SM00853	MutL C terminal dimerisation domain
ACH33_RS11670	SM01340	ACH33_RS11670
ACH33_RS11675	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ACH33_RS11675	SM00534	ATPase domain of DNA mismatch repair MUTS family
ACH33_RS11690	SM00857	Resolvase, N terminal domain
ACH33_RS11705	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ACH33_RS11740	SM00100	Cyclic nucleotide-monophosphate binding domain
ACH33_RS11740	SM00419	helix_turn_helix, cAMP Regulatory protein
ACH33_RS11745	SM00100	Cyclic nucleotide-monophosphate binding domain
ACH33_RS11745	SM00419	helix_turn_helix, cAMP Regulatory protein
ACH33_RS11770	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS11795	SM00857	Resolvase, N terminal domain
ACH33_RS11800	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS11875	SM00331	Sigma factor PP2C-like phosphatases
ACH33_RS11875	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ACH33_RS11880	SM00331	Sigma factor PP2C-like phosphatases
ACH33_RS11880	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ACH33_RS11890	SM00240	Forkhead associated domain
ACH33_RS11895	SM00271	DnaJ molecular chaperone homology domain
ACH33_RS11910	SM00220	Serine/Threonine protein kinases, catalytic domain
ACH33_RS11935	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS11950	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS11970	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS11995	SM00322	K homology RNA-binding domain
ACH33_RS11995	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACH33_RS12005	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS12025	SM00487	DEAD-like helicases superfamily
ACH33_RS12025	SM00490	helicase superfamily c-terminal domain
ACH33_RS12030	SM00852	Probable molybdopterin binding domain
ACH33_RS12040	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS12045	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS12085	SM00219	Tyrosine kinase, catalytic domain
ACH33_RS12090	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS12095	SM00450	Rhodanese Homology Domain
ACH33_RS12135	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS12165	SM00881	CoA binding domain
ACH33_RS12170	SM00479	ACH33_RS12170
ACH33_RS12170	SM00487	DEAD-like helicases superfamily
ACH33_RS12170	SM00488	ACH33_RS12170
ACH33_RS12170	SM00491	ACH33_RS12170
ACH33_RS12175	SM00028	Tetratricopeptide repeats
ACH33_RS12215	SM00851	MGS-like domain
ACH33_RS12265	SM00914	ACH33_RS12265
ACH33_RS12275	SM00028	Tetratricopeptide repeats
ACH33_RS12370	SM00138	Methyltransferase, chemotaxis proteins 
ACH33_RS12375	SM00562	ACH33_RS12375
ACH33_RS12415	SM00411	bacterial (prokaryotic) histone like domain
ACH33_RS12460	SM01207	ACH33_RS12460
ACH33_RS12485	SM01240	ACH33_RS12485
ACH33_RS12490	SM00316	Ribosomal protein S1-like RNA-binding domain
ACH33_RS12495	SM00563	Phosphate acyltransferases
ACH33_RS12525	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ACH33_RS12540	SM01061	CAT RNA binding domain
ACH33_RS12565	SM00954	Region found in RelA / SpoT proteins
ACH33_RS12580	SM00487	DEAD-like helicases superfamily
ACH33_RS12580	SM00490	helicase superfamily c-terminal domain
ACH33_RS12585	SM00257	Lysin motif
ACH33_RS12595	SM00487	DEAD-like helicases superfamily
ACH33_RS12595	SM00490	helicase superfamily c-terminal domain
ACH33_RS12645	SM00822	ACH33_RS12645
ACH33_RS12660	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS12660	SM00387	Histidine kinase-like ATPases
ACH33_RS12660	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS12665	SM00448	cheY-homologous receiver domain
ACH33_RS12665	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS12675	SM00487	DEAD-like helicases superfamily
ACH33_RS12675	SM00490	helicase superfamily c-terminal domain
ACH33_RS12680	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS12680	SM00387	Histidine kinase-like ATPases
ACH33_RS12680	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS12685	SM00448	cheY-homologous receiver domain
ACH33_RS12685	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS12715	SM00363	S4 RNA-binding domain
ACH33_RS12835	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS12885	SM00387	Histidine kinase-like ATPases
ACH33_RS12895	SM00936	Penicillin-binding protein 5, C-terminal domain 
ACH33_RS12900	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS12905	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS12925	SM00344	helix_turn_helix ASNC type
ACH33_RS13010	SM00861	Transketolase, pyrimidine binding domain
ACH33_RS13025	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ACH33_RS13030	SM00091	PAS domain
ACH33_RS13030	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS13055	SM00450	Rhodanese Homology Domain
ACH33_RS13070	SM01091	Transporter associated domain
ACH33_RS13080	SM00422	helix_turn_helix, mercury resistance
ACH33_RS13200	SM00387	Histidine kinase-like ATPases
ACH33_RS13200	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS13205	SM00448	cheY-homologous receiver domain
ACH33_RS13210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS13210	SM00387	Histidine kinase-like ATPases
ACH33_RS13210	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS13220	SM00448	cheY-homologous receiver domain
ACH33_RS13270	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS13290	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS13295	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS13315	SM01236	ACH33_RS13315
ACH33_RS13325	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS13345	SM00882	Coenzyme A transferase
ACH33_RS13350	SM00882	Coenzyme A transferase
ACH33_RS13360	SM00091	PAS domain
ACH33_RS13360	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS13365	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS13425	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS13445	SM00878	Biotin carboxylase C-terminal domain
ACH33_RS13465	SM00882	Coenzyme A transferase
ACH33_RS13470	SM00882	Coenzyme A transferase
ACH33_RS13490	SM00100	Cyclic nucleotide-monophosphate binding domain
ACH33_RS13490	SM00419	helix_turn_helix, cAMP Regulatory protein
ACH33_RS13520	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS13575	SM00220	Serine/Threonine protein kinases, catalytic domain
ACH33_RS13580	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS13600	SM01007	Class II Aldolase and Adducin N-terminal domain
ACH33_RS13625	SM00822	ACH33_RS13625
ACH33_RS13635	SM00981	ACH33_RS13635
ACH33_RS13665	SM00822	ACH33_RS13665
ACH33_RS13710	SM00893	Electron transfer flavoprotein domain
ACH33_RS13715	SM00893	Electron transfer flavoprotein domain
ACH33_RS13760	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS13765	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ACH33_RS13765	SM00267	diguanylate cyclase
ACH33_RS13785	SM00363	S4 RNA-binding domain
ACH33_RS13785	SM01390	ACH33_RS13785
ACH33_RS13790	SM00363	S4 RNA-binding domain
ACH33_RS13810	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACH33_RS13825	SM00354	helix_turn _helix lactose operon repressor
ACH33_RS13835	SM00830	Chorismate mutase type II
ACH33_RS13840	SM00842	Cell division protein FtsA
ACH33_RS13860	SM01329	ACH33_RS13860
ACH33_RS13895	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACH33_RS14055	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS14060	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS14100	SM01130	ACH33_RS14100
ACH33_RS14105	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS14105	SM00895	ACH33_RS14105
ACH33_RS14115	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS14140	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS14140	SM00843	ACH33_RS14140
ACH33_RS14170	SM00421	helix_turn_helix, Lux Regulon
ACH33_RS14170	SM00448	cheY-homologous receiver domain
ACH33_RS14175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS14175	SM00387	Histidine kinase-like ATPases
ACH33_RS14190	SM00363	S4 RNA-binding domain
ACH33_RS14260	SM00487	DEAD-like helicases superfamily
ACH33_RS14260	SM00490	helicase superfamily c-terminal domain
ACH33_RS14295	SM00917	LeuA allosteric (dimerisation) domain
ACH33_RS14335	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS14345	SM00838	Elongation factor G C-terminus
ACH33_RS14370	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS14480	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS14520	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS14535	SM00354	helix_turn _helix lactose operon repressor
ACH33_RS14595	SM00881	CoA binding domain
ACH33_RS14620	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS14620	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS14625	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ACH33_RS14635	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS14655	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ACH33_RS14675	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ACH33_RS14675	SM01232	ACH33_RS14675
ACH33_RS14680	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ACH33_RS14680	SM00474	3'-5' exonuclease
ACH33_RS14680	SM00475	5'-3' exonuclease
ACH33_RS14680	SM00482	DNA polymerase A domain
ACH33_RS14685	SM00244	prohibitin homologues
ACH33_RS14695	SM00091	PAS domain
ACH33_RS14695	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS14695	SM00387	Histidine kinase-like ATPases
ACH33_RS14695	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS14700	SM00448	cheY-homologous receiver domain
ACH33_RS14700	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS14725	SM01329	ACH33_RS14725
ACH33_RS14775	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS14775	SM00895	ACH33_RS14775
ACH33_RS14780	SM00919	Malic enzyme, NAD binding domain
ACH33_RS14780	SM01274	ACH33_RS14780
ACH33_RS14785	SM00481	DNA polymerase alpha chain like domain
ACH33_RS14810	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACH33_RS14830	SM00849	Metallo-beta-lactamase superfamily
ACH33_RS15075	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS15090	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS15095	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS15110	SM00857	Resolvase, N terminal domain
ACH33_RS15115	SM00763	PrkA AAA domain
ACH33_RS15160	SM00567	E-Z type HEAT repeats
ACH33_RS15170	SM00873	B3/4 domain
ACH33_RS15180	SM00986	Uracil DNA glycosylase superfamily
ACH33_RS15180	SM00987	UreE urease accessory protein, C-terminal domain 
ACH33_RS15190	SM00986	Uracil DNA glycosylase superfamily
ACH33_RS15190	SM00987	UreE urease accessory protein, C-terminal domain 
ACH33_RS15385	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS15415	SM01007	Class II Aldolase and Adducin N-terminal domain
ACH33_RS15430	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS15480	SM00478	endonuclease III
ACH33_RS15480	SM00525	ACH33_RS15480
ACH33_RS15560	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS15580	SM00091	PAS domain
ACH33_RS15580	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS15655	SM00287	Bacterial SH3 domain homologues
ACH33_RS15660	SM00387	Histidine kinase-like ATPases
ACH33_RS15670	SM00422	helix_turn_helix, mercury resistance
ACH33_RS15745	SM00857	Resolvase, N terminal domain
ACH33_RS15750	SM00857	Resolvase, N terminal domain
ACH33_RS15810	SM00450	Rhodanese Homology Domain
ACH33_RS15865	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS15870	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS15875	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACH33_RS15960	SM00487	DEAD-like helicases superfamily
ACH33_RS15960	SM00490	helicase superfamily c-terminal domain
ACH33_RS16025	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16030	SM00487	DEAD-like helicases superfamily
ACH33_RS16050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS16050	SM00387	Histidine kinase-like ATPases
ACH33_RS16050	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS16055	SM00448	cheY-homologous receiver domain
ACH33_RS16055	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS16060	SM01260	ACH33_RS16060
ACH33_RS16065	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16090	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16100	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ACH33_RS16105	SM00387	Histidine kinase-like ATPases
ACH33_RS16105	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS16110	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS16125	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS16125	SM00895	ACH33_RS16125
ACH33_RS16135	SM00267	diguanylate cyclase
ACH33_RS16145	SM00052	Putative diguanylate phosphodiesterase
ACH33_RS16150	SM00845	GatB domain
ACH33_RS16165	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS16165	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS16175	SM00091	PAS domain
ACH33_RS16175	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16180	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACH33_RS16180	SM00292	breast cancer carboxy-terminal domain
ACH33_RS16180	SM00532	Ligase N family
ACH33_RS16200	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16230	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS16230	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS16240	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16245	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16270	SM01209	ACH33_RS16270
ACH33_RS16270	SM01210	ACH33_RS16270
ACH33_RS16275	SM00798	AICARFT/IMPCHase bienzyme
ACH33_RS16275	SM00851	MGS-like domain
ACH33_RS16300	SM01211	ACH33_RS16300
ACH33_RS16315	SM00998	Adenylosuccinate lyase C-terminus
ACH33_RS16325	SM01001	AIR carboxylase
ACH33_RS16330	SM00448	cheY-homologous receiver domain
ACH33_RS16330	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACH33_RS16350	SM00883	Chaperonin 10 Kd subunit
ACH33_RS16360	SM00852	Probable molybdopterin binding domain
ACH33_RS16370	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16405	SM00731	SprT homologues.
ACH33_RS16415	SM00316	Ribosomal protein S1-like RNA-binding domain
ACH33_RS16415	SM00732	Likely ribonuclease with RNase H fold.
ACH33_RS16430	SM01005	Alanine racemase, C-terminal domain
ACH33_RS16555	SM00646	ACH33_RS16555
ACH33_RS16625	SM00448	cheY-homologous receiver domain
ACH33_RS16625	SM00850	LytTr DNA-binding domain
ACH33_RS16630	SM00793	Accessory gene regulator B
ACH33_RS16650	SM00882	Coenzyme A transferase
ACH33_RS16655	SM00882	Coenzyme A transferase
ACH33_RS16675	SM00091	PAS domain
ACH33_RS16675	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16715	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16715	SM01086	C-terminal, D2-small domain, of ClpB protein
ACH33_RS16730	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS16730	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS16730	SM01049	ACH33_RS16730
ACH33_RS16765	SM00857	Resolvase, N terminal domain
ACH33_RS16930	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS16935	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS16945	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS16950	SM00530	Helix-turn-helix XRE-family like proteins 
ACH33_RS16965	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS16990	SM00899	ACH33_RS16990
ACH33_RS17005	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS17025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACH33_RS17030	SM00387	Histidine kinase-like ATPases
ACH33_RS17030	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS17035	SM00448	cheY-homologous receiver domain
ACH33_RS17035	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS17045	SM00091	PAS domain
ACH33_RS17045	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS17115	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ACH33_RS17115	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
ACH33_RS17120	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACH33_RS17265	SM00947	Carbonic anhydrase
ACH33_RS17305	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS17310	SM00387	Histidine kinase-like ATPases
ACH33_RS17310	SM00388	His Kinase A (phosphoacceptor) domain
ACH33_RS17315	SM00448	cheY-homologous receiver domain
ACH33_RS17315	SM00862	Transcriptional regulatory protein, C terminal
ACH33_RS17465	SM01251	ACH33_RS17465
ACH33_RS17480	SM00646	ACH33_RS17480
ACH33_RS17510	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS17515	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS17525	SM00662	RNA polymerases D
ACH33_RS17545	SM00316	Ribosomal protein S1-like RNA-binding domain
ACH33_RS17605	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ACH33_RS17610	SM01374	ACH33_RS17610
ACH33_RS17630	SM00322	K homology RNA-binding domain
ACH33_RS17645	SM01382	ACH33_RS17645
ACH33_RS17645	SM01383	ACH33_RS17645
ACH33_RS17665	SM01403	ACH33_RS17665
ACH33_RS17745	SM01298	ACH33_RS17745
ACH33_RS17755	SM00244	prohibitin homologues
ACH33_RS17860	SM00838	Elongation factor G C-terminus
ACH33_RS17860	SM00889	Elongation factor G, domain IV
ACH33_RS17880	SM00663	RNA polymerase I subunit A N-terminus
ACH33_RS17910	SM00649	Ribosomal protein L11/L12
ACH33_RS17915	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ACH33_RS17930	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ACH33_RS17930	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACH33_RS17945	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ACH33_RS17955	SM00840	ACH33_RS17955
ACH33_RS17980	SM00670	Large family of predicted nucleotide-binding domains
ACH33_RS17985	SM01058	CarD-like/TRCF domain
ACH33_RS18000	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS18005	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS18005	SM01086	C-terminal, D2-small domain, of ClpB protein
ACH33_RS18025	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS18045	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACH33_RS18105	SM00905	Dihydroneopterin aldolase
ACH33_RS18160	SM00382	ATPases associated with a variety of cellular activities
ACH33_RS18170	SM00977	TilS substrate C-terminal domain
ACH33_RS18180	SM00331	Sigma factor PP2C-like phosphatases
ACH33_RS18180	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ACH33_RS18200	SM00363	S4 RNA-binding domain
ACH33_RS18220	SM00966	SpoVT / AbrB like domain 
ACH33_RS18230	SM00487	DEAD-like helicases superfamily
ACH33_RS18230	SM00490	helicase superfamily c-terminal domain
ACH33_RS18230	SM00982	ACH33_RS18230
ACH33_RS18230	SM01058	CarD-like/TRCF domain
ACH33_RS18250	SM01400	ACH33_RS18250
ACH33_RS18295	SM00650	Ribosomal RNA adenine dimethylases
ACH33_RS18300	SM00493	ACH33_RS18300
ACH33_RS18305	SM01208	ACH33_RS18305
ACH33_RS18320	SM00966	SpoVT / AbrB like domain 
