locus-tag class description AFLV_RS00015 PF08299 Bacterial dnaA protein helix-turn-helix AFLV_RS00015 PF00308 Bacterial dnaA protein AFLV_RS00015 PF11638 DnaA N-terminal domain AFLV_RS00020 PF02768 DNA polymerase III beta subunit, C-terminal domain AFLV_RS00020 PF02767 DNA polymerase III beta subunit, central domain AFLV_RS00020 PF00712 DNA polymerase III beta subunit, N-terminal domain AFLV_RS00030 PF02463 RecF/RecN/SMC N terminal domain AFLV_RS00035 PF01751 Toprim domain AFLV_RS00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS00035 PF00986 DNA gyrase B subunit, carboxyl terminus AFLV_RS00035 PF00204 DNA gyrase B AFLV_RS00040 PF03989 DNA gyrase C-terminal domain, beta-propeller AFLV_RS00040 PF00521 DNA gyrase/topoisomerase IV, subunit A AFLV_RS00045 PF00072 Response regulator receiver domain AFLV_RS00075 PF14175 YaaC-like Protein AFLV_RS00080 PF00478 IMP dehydrogenase / GMP reductase domain AFLV_RS00080 PF00571 CBS domain AFLV_RS00085 PF07943 Penicillin-binding protein 5, C-terminal domain AFLV_RS00085 PF00768 D-alanyl-D-alanine carboxypeptidase AFLV_RS00090 PF01680 SOR/SNZ family AFLV_RS00095 PF01174 SNO glutamine amidotransferase family AFLV_RS00100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFLV_RS00100 PF02403 Seryl-tRNA synthetase N-terminal domain AFLV_RS00110 PF01712 Deoxynucleoside kinase AFLV_RS00115 PF01712 Deoxynucleoside kinase AFLV_RS00120 PF14437 MafB19-like deaminase AFLV_RS00125 PF12169 DNA polymerase III subunits gamma and tau domain III AFLV_RS00130 PF02575 YbaB/EbfC DNA-binding family AFLV_RS00135 PF02132 RecR protein AFLV_RS00135 PF13662 Toprim domain AFLV_RS00140 PF10704 Protein of unknown function (DUF2508) AFLV_RS00145 PF07441 SigmaK-factor processing regulatory protein BofA AFLV_RS00175 PF10764 Inhibitor of sigma-G Gin AFLV_RS00180 PF01276 Orn/Lys/Arg decarboxylase, major domain AFLV_RS00180 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AFLV_RS00185 PF02223 Thymidylate kinase AFLV_RS00190 PF09115 DNA polymerase III, delta subunit, C terminal AFLV_RS00195 PF04468 PSP1 C-terminal conserved region AFLV_RS00200 PF06156 Initiation control protein YabA AFLV_RS00205 PF05175 Methyltransferase small domain AFLV_RS00210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFLV_RS00215 PF18277 AbrB C-terminal domain AFLV_RS00215 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AFLV_RS00220 PF08264 Anticodon-binding domain of tRNA AFLV_RS00220 PF09334 tRNA synthetases class I (M) AFLV_RS00220 PF01588 Putative tRNA binding domain AFLV_RS00225 PF01026 TatD related DNase AFLV_RS00230 PF06725 3D domain AFLV_RS00230 PF03990 G5-linked-Ubiquitin-like domain AFLV_RS00230 PF07501 G5 domain AFLV_RS00235 PF13662 Toprim domain AFLV_RS00235 PF13331 Domain of unknown function (DUF4093) AFLV_RS00240 PF00398 Ribosomal RNA adenine dimethylase AFLV_RS00245 PF05582 YabG peptidase U57 AFLV_RS00250 PF06257 Biofilm formation stimulator VEG AFLV_RS00255 PF00288 GHMP kinases N terminal domain AFLV_RS00255 PF08544 GHMP kinases C terminal AFLV_RS00260 PF09182 Bacterial purine repressor, N-terminal AFLV_RS00260 PF00156 Phosphoribosyl transferase domain AFLV_RS00265 PF01042 Endoribonuclease L-PSP AFLV_RS00270 PF04026 SpoVG AFLV_RS00275 PF00483 Nucleotidyl transferase AFLV_RS00275 PF00132 Bacterial transferase hexapeptide (six repeats) AFLV_RS00280 PF14572 Phosphoribosyl synthetase-associated domain AFLV_RS00280 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFLV_RS00285 PF14693 Ribosomal protein TL5, C-terminal domain AFLV_RS00285 PF01386 Ribosomal L25p family AFLV_RS00290 PF01195 Peptidyl-tRNA hydrolase AFLV_RS00295 PF10955 Protein of unknown function (DUF2757) AFLV_RS00300 PF03461 TRCF domain AFLV_RS00300 PF17757 UvrB interaction domain AFLV_RS00300 PF02559 CarD-like/TRCF domain AFLV_RS00300 PF00271 Helicase conserved C-terminal domain AFLV_RS00300 PF00270 DEAD/DEAH box helicase AFLV_RS00305 PF15714 Stage V sporulation protein T C-terminal, transcription factor AFLV_RS00305 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AFLV_RS00310 PF14667 Polysaccharide biosynthesis C-terminal domain AFLV_RS00310 PF01943 Polysaccharide biosynthesis protein AFLV_RS00315 PF03819 MazG nucleotide pyrophosphohydrolase domain AFLV_RS00315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFLV_RS00320 PF01479 S4 domain AFLV_RS00325 PF07873 YabP family AFLV_RS00330 PF09578 Spore cortex protein YabQ (Spore_YabQ) AFLV_RS00340 PF00575 S1 RNA binding domain AFLV_RS00355 PF07228 Stage II sporulation protein E (SpoIIE) AFLV_RS00360 PF00092 von Willebrand factor type A domain AFLV_RS00365 PF00069 Protein kinase domain AFLV_RS00370 PF01171 PP-loop family AFLV_RS00370 PF09179 TilS substrate binding domain AFLV_RS00370 PF11734 TilS substrate C-terminal domain AFLV_RS00375 PF00156 Phosphoribosyl transferase domain AFLV_RS00380 PF17862 AAA+ lid domain AFLV_RS00380 PF06480 FtsH Extracellular AFLV_RS00380 PF01434 Peptidase family M41 AFLV_RS00380 PF00004 ATPase family associated with various cellular activities (AAA) AFLV_RS00385 PF03309 Type III pantothenate kinase AFLV_RS00390 PF01430 Hsp33 protein AFLV_RS00395 PF00291 Pyridoxal-phosphate dependent enzyme AFLV_RS00400 PF04715 Anthranilate synthase component I, N terminal region AFLV_RS00400 PF00425 chorismate binding enzyme AFLV_RS00405 PF00117 Glutamine amidotransferase class-I AFLV_RS00410 PF01063 Amino-transferase class IV AFLV_RS00415 PF00809 Pterin binding enzyme AFLV_RS00420 PF02152 Dihydroneopterin aldolase AFLV_RS00425 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFLV_RS00430 PF01207 Dihydrouridine synthase (Dus) AFLV_RS00435 PF01336 OB-fold nucleic acid binding domain AFLV_RS00435 PF00152 tRNA synthetases class II (D, K and N) AFLV_RS00455 PF05848 CtsR N-terminal HTH domain AFLV_RS00455 PF17727 CtsR C-terminal dimerization domain AFLV_RS00460 PF02151 UvrB/uvrC motif AFLV_RS00465 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AFLV_RS00470 PF00004 ATPase family associated with various cellular activities (AAA) AFLV_RS00470 PF07724 AAA domain (Cdc48 subfamily) AFLV_RS00470 PF17871 AAA lid domain AFLV_RS00470 PF02861 Clp amino terminal domain, pathogenicity island component AFLV_RS00470 PF10431 C-terminal, D2-small domain, of ClpB protein AFLV_RS00475 PF18073 Rubredoxin metal binding domain AFLV_RS00485 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFLV_RS00490 PF02542 YgbB family AFLV_RS00495 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFLV_RS00500 PF06426 Serine acetyltransferase, N-terminal AFLV_RS00500 PF00132 Bacterial transferase hexapeptide (six repeats) AFLV_RS00505 PF01406 tRNA synthetases class I (C) catalytic domain AFLV_RS00505 PF09190 DALR domain AFLV_RS00510 PF00636 Ribonuclease III domain AFLV_RS00515 PF00588 SpoU rRNA Methylase family AFLV_RS00515 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFLV_RS00520 PF05991 YacP-like NYN domain AFLV_RS00525 PF08281 Sigma-70, region 4 AFLV_RS00525 PF04542 Sigma-70 region 2 AFLV_RS00530 PF00471 Ribosomal protein L33 AFLV_RS00535 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AFLV_RS00540 PF02357 Transcription termination factor nusG AFLV_RS00540 PF00467 KOW motif AFLV_RS00545 PF00298 Ribosomal protein L11, RNA binding domain AFLV_RS00545 PF03946 Ribosomal protein L11, N-terminal domain AFLV_RS00550 PF00687 Ribosomal protein L1p/L10e family AFLV_RS00555 PF00466 Ribosomal protein L10 AFLV_RS00560 PF16320 Ribosomal protein L7/L12 dimerisation domain AFLV_RS00560 PF00542 Ribosomal protein L7/L12 C-terminal domain AFLV_RS00565 PF05175 Methyltransferase small domain AFLV_RS00570 PF00562 RNA polymerase Rpb2, domain 6 AFLV_RS00570 PF04565 RNA polymerase Rpb2, domain 3 AFLV_RS00570 PF04561 RNA polymerase Rpb2, domain 2 AFLV_RS00570 PF04560 RNA polymerase Rpb2, domain 7 AFLV_RS00570 PF04563 RNA polymerase beta subunit AFLV_RS00570 PF10385 RNA polymerase beta subunit external 1 domain AFLV_RS00575 PF04997 RNA polymerase Rpb1, domain 1 AFLV_RS00575 PF04998 RNA polymerase Rpb1, domain 5 AFLV_RS00575 PF00623 RNA polymerase Rpb1, domain 2 AFLV_RS00575 PF04983 RNA polymerase Rpb1, domain 3 AFLV_RS00575 PF05000 RNA polymerase Rpb1, domain 4 AFLV_RS00580 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AFLV_RS00585 PF00164 Ribosomal protein S12/S23 AFLV_RS00590 PF00177 Ribosomal protein S7p/S5e AFLV_RS00595 PF00679 Elongation factor G C-terminus AFLV_RS00595 PF14492 Elongation Factor G, domain II AFLV_RS00595 PF03764 Elongation factor G, domain IV AFLV_RS00595 PF00009 Elongation factor Tu GTP binding domain AFLV_RS00595 PF03144 Elongation factor Tu domain 2 AFLV_RS00600 PF00009 Elongation factor Tu GTP binding domain AFLV_RS00600 PF03143 Elongation factor Tu C-terminal domain AFLV_RS00600 PF03144 Elongation factor Tu domain 2 AFLV_RS00605 PF00338 Ribosomal protein S10p/S20e AFLV_RS00610 PF00297 Ribosomal protein L3 AFLV_RS00615 PF00573 Ribosomal protein L4/L1 family AFLV_RS00620 PF00276 Ribosomal protein L23 AFLV_RS00625 PF03947 Ribosomal Proteins L2, C-terminal domain AFLV_RS00625 PF00181 Ribosomal Proteins L2, RNA binding domain AFLV_RS00630 PF00203 Ribosomal protein S19 AFLV_RS00635 PF00237 Ribosomal protein L22p/L17e AFLV_RS00640 PF07650 KH domain AFLV_RS00640 PF00189 Ribosomal protein S3, C-terminal domain AFLV_RS00645 PF00252 Ribosomal protein L16p/L10e AFLV_RS00650 PF00831 Ribosomal L29 protein AFLV_RS00655 PF00366 Ribosomal protein S17 AFLV_RS00660 PF00238 Ribosomal protein L14p/L23e AFLV_RS00665 PF00467 KOW motif AFLV_RS00665 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AFLV_RS00670 PF00281 Ribosomal protein L5 AFLV_RS00670 PF00673 ribosomal L5P family C-terminus AFLV_RS00675 PF00253 Ribosomal protein S14p/S29e AFLV_RS00680 PF00410 Ribosomal protein S8 AFLV_RS00685 PF00347 Ribosomal protein L6 AFLV_RS00690 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AFLV_RS00695 PF03719 Ribosomal protein S5, C-terminal domain AFLV_RS00695 PF00333 Ribosomal protein S5, N-terminal domain AFLV_RS00700 PF00327 Ribosomal protein L30p/L7e AFLV_RS00705 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AFLV_RS00710 PF00344 SecY translocase AFLV_RS00715 PF05191 Adenylate kinase, active site lid AFLV_RS00720 PF00557 Metallopeptidase family M24 AFLV_RS00725 PF01176 Translation initiation factor 1A / IF-1 AFLV_RS00730 PF00444 Ribosomal protein L36 AFLV_RS00735 PF00416 Ribosomal protein S13/S18 AFLV_RS00740 PF00411 Ribosomal protein S11 AFLV_RS00745 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFLV_RS00745 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFLV_RS00745 PF01000 RNA polymerase Rpb3/RpoA insert domain AFLV_RS00750 PF01196 Ribosomal protein L17 AFLV_RS00755 PF00005 ABC transporter AFLV_RS00760 PF00005 ABC transporter AFLV_RS00765 PF02361 Cobalt transport protein AFLV_RS00770 PF01416 tRNA pseudouridine synthase AFLV_RS00775 PF00572 Ribosomal protein L13 AFLV_RS00780 PF00380 Ribosomal protein S9/S16 AFLV_RS00790 PF01520 N-acetylmuramoyl-L-alanine amidase AFLV_RS00795 PF10609 NUBPL iron-transfer P-loop NTPase AFLV_RS00800 PF17898 Spore germination GerD central core domain AFLV_RS00805 PF14089 KinB-signalling pathway activation in sporulation AFLV_RS00810 PF01522 Polysaccharide deacetylase AFLV_RS00880 PF00491 Arginase family AFLV_RS00885 PF04542 Sigma-70 region 2 AFLV_RS00885 PF08281 Sigma-70, region 4 AFLV_RS00890 PF13490 Putative zinc-finger AFLV_RS00895 PF02457 DisA bacterial checkpoint controller nucleotide-binding AFLV_RS00900 PF07949 YbbR-like protein AFLV_RS00905 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFLV_RS00905 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFLV_RS00905 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFLV_RS00905 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFLV_RS00910 PF01380 SIS domain AFLV_RS00945 PF01553 Acyltransferase AFLV_RS00955 PF01648 4'-phosphopantetheinyl transferase superfamily AFLV_RS01000 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AFLV_RS01035 PF07730 Histidine kinase AFLV_RS01035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS01040 PF00072 Response regulator receiver domain AFLV_RS01040 PF00196 Bacterial regulatory proteins, luxR family AFLV_RS01045 PF13411 MerR HTH family regulatory protein AFLV_RS01045 PF07739 TipAS antibiotic-recognition domain AFLV_RS01050 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS01060 PF02554 Carbon starvation protein CstA AFLV_RS01060 PF13722 5TM C-terminal transporter carbon starvation CstA AFLV_RS01075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFLV_RS01075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFLV_RS01075 PF02770 Acyl-CoA dehydrogenase, middle domain AFLV_RS01080 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS01080 PF00501 AMP-binding enzyme AFLV_RS01085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFLV_RS01085 PF00289 Biotin carboxylase, N-terminal domain AFLV_RS01085 PF02785 Biotin carboxylase C-terminal domain AFLV_RS01090 PF00364 Biotin-requiring enzyme AFLV_RS01095 PF00682 HMGL-like AFLV_RS01100 PF00378 Enoyl-CoA hydratase/isomerase AFLV_RS01105 PF01039 Carboxyl transferase domain AFLV_RS01110 PF01522 Polysaccharide deacetylase AFLV_RS01120 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AFLV_RS01130 PF03323 Bacillus/Clostridium GerA spore germination protein AFLV_RS01135 PF03845 Spore germination protein AFLV_RS01140 PF01820 D-ala D-ala ligase N-terminus AFLV_RS01140 PF07478 D-ala D-ala ligase C-terminus AFLV_RS01145 PF01225 Mur ligase family, catalytic domain AFLV_RS01145 PF02875 Mur ligase family, glutamate ligase domain AFLV_RS01145 PF08245 Mur ligase middle domain AFLV_RS01150 PF00270 DEAD/DEAH box helicase AFLV_RS01150 PF00271 Helicase conserved C-terminal domain AFLV_RS01155 PF01648 4'-phosphopantetheinyl transferase superfamily AFLV_RS01165 PF00842 Alanine racemase, C-terminal domain AFLV_RS01165 PF01168 Alanine racemase, N-terminal domain AFLV_RS01170 PF01402 Ribbon-helix-helix protein, copG family AFLV_RS01175 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AFLV_RS01180 PF09371 Tex-like protein N-terminal domain AFLV_RS01180 PF16921 Tex protein YqgF-like domain AFLV_RS01180 PF17674 HHH domain AFLV_RS01180 PF00575 S1 RNA binding domain AFLV_RS01185 PF10263 SprT-like family AFLV_RS01225 PF05698 Bacterial trigger factor protein (TF) C-terminus AFLV_RS01225 PF05697 Bacterial trigger factor protein (TF) AFLV_RS01270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFLV_RS01275 PF00814 Glycoprotease family AFLV_RS01280 PF00583 Acetyltransferase (GNAT) family AFLV_RS01285 PF00814 Glycoprotease family AFLV_RS01295 PF16326 ABC transporter C-terminal domain AFLV_RS01295 PF00005 ABC transporter AFLV_RS01295 PF12848 ABC transporter AFLV_RS01300 PF06971 Putative DNA-binding protein N-terminus AFLV_RS01300 PF02629 CoA binding domain AFLV_RS01310 PF02517 CPBP intramembrane metalloprotease AFLV_RS01315 PF00166 Chaperonin 10 Kd subunit AFLV_RS01320 PF00118 TCP-1/cpn60 chaperonin family AFLV_RS01335 PF01609 Transposase DDE domain AFLV_RS01340 PF00733 Asparagine synthase AFLV_RS01340 PF13537 Glutamine amidotransferase domain AFLV_RS01345 PF01960 ArgJ family AFLV_RS01350 PF02843 Phosphoribosylglycinamide synthetase, C domain AFLV_RS01350 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFLV_RS01350 PF02844 Phosphoribosylglycinamide synthetase, N domain AFLV_RS01355 PF00491 Arginase family AFLV_RS01365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFLV_RS01365 PF00205 Thiamine pyrophosphate enzyme, central domain AFLV_RS01365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFLV_RS01375 PF07690 Major Facilitator Superfamily AFLV_RS01380 PF00583 Acetyltransferase (GNAT) family AFLV_RS01380 PF14698 Argininosuccinate lyase C-terminal AFLV_RS01380 PF00206 Lyase AFLV_RS01390 PF00117 Glutamine amidotransferase class-I AFLV_RS01390 PF00958 GMP synthase C terminal domain AFLV_RS01390 PF02540 NAD synthase AFLV_RS01395 PF00860 Permease family AFLV_RS01415 PF00011 Hsp20/alpha crystallin family AFLV_RS01420 PF00731 AIR carboxylase AFLV_RS01425 PF02222 ATP-grasp domain AFLV_RS01425 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AFLV_RS01430 PF00206 Lyase AFLV_RS01430 PF10397 Adenylosuccinate lyase C-terminus AFLV_RS01435 PF01259 SAICAR synthetase AFLV_RS01440 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AFLV_RS01450 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFLV_RS01450 PF00586 AIR synthase related protein, N-terminal domain AFLV_RS01450 PF02769 AIR synthase related protein, C-terminal domain AFLV_RS01455 PF00156 Phosphoribosyl transferase domain AFLV_RS01460 PF02769 AIR synthase related protein, C-terminal domain AFLV_RS01460 PF00586 AIR synthase related protein, N-terminal domain AFLV_RS01465 PF00551 Formyl transferase AFLV_RS01470 PF01808 AICARFT/IMPCHase bienzyme AFLV_RS01470 PF02142 MGS-like domain AFLV_RS01475 PF02843 Phosphoribosylglycinamide synthetase, C domain AFLV_RS01475 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFLV_RS01475 PF02844 Phosphoribosylglycinamide synthetase, N domain AFLV_RS01485 PF01979 Amidohydrolase family AFLV_RS01485 PF13382 Adenine deaminase C-terminal domain AFLV_RS01490 PF11258 Protein of unknown function (DUF3048) N-terminal domain AFLV_RS01490 PF17479 Protein of unknown function (DUF3048) C-terminal domain AFLV_RS01495 PF01371 Trp repressor protein AFLV_RS01500 PF01884 PcrB family AFLV_RS01505 PF00580 UvrD/REP helicase N-terminal domain AFLV_RS01505 PF13361 UvrD-like helicase C-terminal domain AFLV_RS01510 PF03120 NAD-dependent DNA ligase OB-fold domain AFLV_RS01510 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFLV_RS01510 PF00533 BRCA1 C Terminus (BRCT) domain AFLV_RS01510 PF12826 Helix-hairpin-helix motif AFLV_RS01510 PF01653 NAD-dependent DNA ligase adenylation domain AFLV_RS01515 PF07537 CamS sex pheromone cAM373 precursor AFLV_RS01520 PF00171 Aldehyde dehydrogenase family AFLV_RS01530 PF13358 DDE superfamily endonuclease AFLV_RS01560 PF01979 Amidohydrolase family AFLV_RS01560 PF13382 Adenine deaminase C-terminal domain AFLV_RS01565 PF02686 Glu-tRNAGln amidotransferase C subunit AFLV_RS01570 PF01425 Amidase AFLV_RS01575 PF02637 GatB domain AFLV_RS01575 PF02934 GatB/GatE catalytic domain AFLV_RS01585 PF00486 Transcriptional regulatory protein, C terminal AFLV_RS01585 PF00072 Response regulator receiver domain AFLV_RS01595 PF03591 AzlC protein AFLV_RS01655 PF00171 Aldehyde dehydrogenase family AFLV_RS01665 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AFLV_RS01670 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFLV_RS01675 PF00510 Cytochrome c oxidase subunit III AFLV_RS01680 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AFLV_RS01695 PF04012 PspA/IM30 family AFLV_RS01705 PF00989 PAS fold AFLV_RS01705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS01705 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS01705 PF18698 Histidine kinase sensor domain AFLV_RS01705 PF00672 HAMP domain AFLV_RS01710 PF00486 Transcriptional regulatory protein, C terminal AFLV_RS01710 PF00072 Response regulator receiver domain AFLV_RS01715 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS01725 PF00753 Metallo-beta-lactamase superfamily AFLV_RS01730 PF07730 Histidine kinase AFLV_RS01730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS01735 PF00196 Bacterial regulatory proteins, luxR family AFLV_RS01735 PF00072 Response regulator receiver domain AFLV_RS01740 PF01925 Sulfite exporter TauE/SafE AFLV_RS01745 PF00781 Diacylglycerol kinase catalytic domain AFLV_RS01750 PF05958 tRNA (Uracil-5-)-methyltransferase AFLV_RS01750 PF01938 TRAM domain AFLV_RS01750 PF02475 Met-10+ like-protein AFLV_RS01755 PF07690 Major Facilitator Superfamily AFLV_RS01765 PF13426 PAS domain AFLV_RS01765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS01765 PF08447 PAS fold AFLV_RS01780 PF08281 Sigma-70, region 4 AFLV_RS01780 PF04542 Sigma-70 region 2 AFLV_RS01795 PF02898 Nitric oxide synthase, oxygenase domain AFLV_RS01800 PF00672 HAMP domain AFLV_RS01800 PF02743 Cache domain AFLV_RS01800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS01810 PF01476 LysM domain AFLV_RS01810 PF00877 NlpC/P60 family AFLV_RS01815 PF03741 Integral membrane protein TerC family AFLV_RS01820 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS01820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFLV_RS01835 PF17910 FeoB cytosolic helical domain AFLV_RS01835 PF07664 Ferrous iron transport protein B C terminus AFLV_RS01835 PF02421 Ferrous iron transport protein B AFLV_RS01835 PF07670 Nucleoside recognition AFLV_RS01845 PF00708 Acylphosphatase AFLV_RS01860 PF01903 CbiX AFLV_RS01865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFLV_RS01875 PF01747 ATP-sulfurylase AFLV_RS01875 PF14306 PUA-like domain AFLV_RS01880 PF01384 Phosphate transporter family AFLV_RS01885 PF01507 Phosphoadenosine phosphosulfate reductase family AFLV_RS01895 PF06569 Protein of unknown function (DUF1128) AFLV_RS01900 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFLV_RS01910 PF03631 Virulence factor BrkB AFLV_RS01920 PF07690 Major Facilitator Superfamily AFLV_RS01925 PF01699 Sodium/calcium exchanger protein AFLV_RS01930 PF14167 YfkD-like protein AFLV_RS01935 PF08756 YfkB-like domain AFLV_RS01935 PF04055 Radical SAM superfamily AFLV_RS01945 PF05681 Fumarate hydratase (Fumerase) AFLV_RS01945 PF05683 Fumarase C-terminus AFLV_RS01950 PF01522 Polysaccharide deacetylase AFLV_RS01955 PF00730 HhH-GPD superfamily base excision DNA repair protein AFLV_RS01960 PF05958 tRNA (Uracil-5-)-methyltransferase AFLV_RS01960 PF01938 TRAM domain AFLV_RS01965 PF00293 NUDIX domain AFLV_RS01975 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AFLV_RS01995 PF00107 Zinc-binding dehydrogenase AFLV_RS01995 PF08240 Alcohol dehydrogenase GroES-like domain AFLV_RS02000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS02000 PF00672 HAMP domain AFLV_RS02000 PF12729 Four helix bundle sensory module for signal transduction AFLV_RS02015 PF01979 Amidohydrolase family AFLV_RS02020 PF01370 NAD dependent epimerase/dehydratase family AFLV_RS02020 PF08338 Domain of unknown function (DUF1731) AFLV_RS02025 PF02631 RecX family AFLV_RS02030 PF00106 short chain dehydrogenase AFLV_RS02035 PF02652 L-lactate permease AFLV_RS02040 PF08838 Protein of unknown function (DUF1811) AFLV_RS02045 PF08176 Small acid-soluble spore protein K family AFLV_RS02050 PF04307 LexA-binding, inner membrane-associated putative hydrolase AFLV_RS02055 PF00730 HhH-GPD superfamily base excision DNA repair protein AFLV_RS02055 PF14815 NUDIX domain AFLV_RS02055 PF00633 Helix-hairpin-helix motif AFLV_RS02070 PF04167 Protein of unknown function (DUF402) AFLV_RS02075 PF00005 ABC transporter AFLV_RS02075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFLV_RS02080 PF00005 ABC transporter AFLV_RS02080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFLV_RS02085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFLV_RS02090 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS02095 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS02095 PF12911 N-terminal TM domain of oligopeptide transport permease C AFLV_RS02100 PF06081 Aromatic acid exporter family member 1 AFLV_RS02105 PF01493 GXGXG motif AFLV_RS02105 PF04898 Glutamate synthase central domain AFLV_RS02105 PF01645 Conserved region in glutamate synthase AFLV_RS02105 PF00310 Glutamine amidotransferases class-II AFLV_RS02110 PF00202 Aminotransferase class-III AFLV_RS02115 PF00005 ABC transporter AFLV_RS02130 PF07885 Ion channel AFLV_RS02135 PF00578 AhpC/TSA family AFLV_RS02140 PF01475 Ferric uptake regulator family AFLV_RS02145 PF11023 Zinc-ribbon containing domain AFLV_RS02150 PF14540 Nucleotidyltransferase-like AFLV_RS02150 PF18576 Helix-turn-helix domain AFLV_RS02200 PF05698 Bacterial trigger factor protein (TF) C-terminus AFLV_RS02200 PF05697 Bacterial trigger factor protein (TF) AFLV_RS02280 PF01545 Cation efflux family AFLV_RS02280 PF16916 Dimerisation domain of Zinc Transporter AFLV_RS02285 PF00128 Alpha amylase, catalytic domain AFLV_RS02285 PF02806 Alpha amylase, C-terminal all-beta domain AFLV_RS02285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFLV_RS02290 PF00483 Nucleotidyl transferase AFLV_RS02295 PF00483 Nucleotidyl transferase AFLV_RS02300 PF08323 Starch synthase catalytic domain AFLV_RS02300 PF00534 Glycosyl transferases group 1 AFLV_RS02305 PF00343 Carbohydrate phosphorylase AFLV_RS02310 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFLV_RS02315 PF01040 UbiA prenyltransferase family AFLV_RS02320 PF00425 chorismate binding enzyme AFLV_RS02325 PF16582 Middle domain of thiamine pyrophosphate AFLV_RS02325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFLV_RS02325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFLV_RS02330 PF00561 alpha/beta hydrolase fold AFLV_RS02335 PF00378 Enoyl-CoA hydratase/isomerase AFLV_RS02340 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS02340 PF00501 AMP-binding enzyme AFLV_RS02345 PF02322 Cytochrome bd terminal oxidase subunit II AFLV_RS02350 PF01654 Cytochrome bd terminal oxidase subunit I AFLV_RS02365 PF00268 Ribonucleotide reductase, small chain AFLV_RS02370 PF00258 Flavodoxin AFLV_RS02375 PF01385 Probable transposase AFLV_RS02375 PF12323 Helix-turn-helix domain AFLV_RS02375 PF07282 Putative transposase DNA-binding domain AFLV_RS02380 PF03477 ATP cone domain AFLV_RS02380 PF02867 Ribonucleotide reductase, barrel domain AFLV_RS02380 PF00317 Ribonucleotide reductase, all-alpha domain AFLV_RS02385 PF02322 Cytochrome bd terminal oxidase subunit II AFLV_RS02390 PF01654 Cytochrome bd terminal oxidase subunit I AFLV_RS02395 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AFLV_RS02395 PF01297 Zinc-uptake complex component A periplasmic AFLV_RS02400 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFLV_RS02400 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFLV_RS02405 PF01809 Putative membrane protein insertion efficiency factor AFLV_RS02410 PF02664 S-Ribosylhomocysteinase (LuxS) AFLV_RS02415 PF00210 Ferritin-like domain AFLV_RS02425 PF00293 NUDIX domain AFLV_RS02430 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS02435 PF00005 ABC transporter AFLV_RS02445 PF10763 Protein of unknown function (DUF2584) AFLV_RS02455 PF00005 ABC transporter AFLV_RS02460 PF02361 Cobalt transport protein AFLV_RS02465 PF13190 PDGLE domain AFLV_RS02465 PF01891 Cobalt uptake substrate-specific transmembrane region AFLV_RS02475 PF01293 Phosphoenolpyruvate carboxykinase AFLV_RS02480 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFLV_RS02480 PF02772 S-adenosylmethionine synthetase, central domain AFLV_RS02480 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFLV_RS02485 PF01569 PAP2 superfamily AFLV_RS02490 PF00132 Bacterial transferase hexapeptide (six repeats) AFLV_RS02495 PF12146 Serine aminopeptidase, S33 AFLV_RS02500 PF10776 Protein of unknown function (DUF2600) AFLV_RS02510 PF06962 Putative rRNA methylase AFLV_RS02515 PF16199 Radical_SAM C-terminal domain AFLV_RS02515 PF04055 Radical SAM superfamily AFLV_RS02520 PF10732 Protein of unknown function (DUF2524) AFLV_RS02530 PF13603 Leucyl-tRNA synthetase, Domain 2 AFLV_RS02530 PF08264 Anticodon-binding domain of tRNA AFLV_RS02530 PF09334 tRNA synthetases class I (M) AFLV_RS02530 PF00133 tRNA synthetases class I (I, L, M and V) AFLV_RS02535 PF00581 Rhodanese-like domain AFLV_RS02545 PF14667 Polysaccharide biosynthesis C-terminal domain AFLV_RS02545 PF01943 Polysaccharide biosynthesis protein AFLV_RS02555 PF01479 S4 domain AFLV_RS02555 PF00849 RNA pseudouridylate synthase AFLV_RS02560 PF08220 DeoR-like helix-turn-helix domain AFLV_RS02565 PF01546 Peptidase family M20/M25/M40 AFLV_RS02570 PF12832 MFS_1 like family AFLV_RS02575 PF02834 LigT like Phosphoesterase AFLV_RS02580 PF03788 LrgA family AFLV_RS02585 PF04172 LrgB-like family AFLV_RS02595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFLV_RS02595 PF00128 Alpha amylase, catalytic domain AFLV_RS02595 PF17999 Pullulanase N1-terminal domain AFLV_RS02600 PF01636 Phosphotransferase enzyme family AFLV_RS02605 PF14165 YtzH-like protein AFLV_RS02610 PF02390 Putative methyltransferase AFLV_RS02615 PF00753 Metallo-beta-lactamase superfamily AFLV_RS02625 PF05343 M42 glutamyl aminopeptidase AFLV_RS02630 PF01931 Protein of unknown function DUF84 AFLV_RS02635 PF00085 Thioredoxin AFLV_RS02640 PF07285 Protein of unknown function (DUF1444) AFLV_RS02645 PF01588 Putative tRNA binding domain AFLV_RS02645 PF14794 Domain of unknown function (DUF4479) AFLV_RS02650 PF09397 Ftsk gamma domain AFLV_RS02650 PF01580 FtsK/SpoIIIE family AFLV_RS02650 PF17854 FtsK alpha domain AFLV_RS02650 PF09397 Ftsk gamma domain AFLV_RS02650 PF01580 FtsK/SpoIIIE family AFLV_RS02650 PF17854 FtsK alpha domain AFLV_RS02660 PF08245 Mur ligase middle domain AFLV_RS02660 PF02875 Mur ligase family, glutamate ligase domain AFLV_RS02660 PF01225 Mur ligase family, catalytic domain AFLV_RS02665 PF11009 Protein of unknown function (DUF2847) AFLV_RS02675 PF06103 Bacterial protein of unknown function (DUF948) AFLV_RS02680 PF02073 Thermophilic metalloprotease (M29) AFLV_RS02685 PF02491 SHS2 domain inserted in FTSA AFLV_RS02690 PF01817 Chorismate mutase type II AFLV_RS02690 PF00793 DAHP synthetase I family AFLV_RS02695 PF00356 Bacterial regulatory proteins, lacI family AFLV_RS02700 PF00850 Histone deacetylase domain AFLV_RS02705 PF00571 CBS domain AFLV_RS02710 PF00583 Acetyltransferase (GNAT) family AFLV_RS02715 PF00501 AMP-binding enzyme AFLV_RS02715 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS02720 PF00905 Penicillin binding protein transpeptidase domain AFLV_RS02720 PF00912 Transglycosylase AFLV_RS02725 PF01479 S4 domain AFLV_RS02725 PF00579 tRNA synthetases class I (W and Y) AFLV_RS02730 PF00163 Ribosomal protein S4/S9 N-terminal domain AFLV_RS02730 PF01479 S4 domain AFLV_RS02735 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS02740 PF13185 GAF domain AFLV_RS02745 PF02811 PHP domain AFLV_RS02750 PF06160 Septation ring formation regulator, EzrA AFLV_RS02755 PF05525 Branched-chain amino acid transport protein AFLV_RS02760 PF00266 Aminotransferase class-V AFLV_RS02765 PF02568 Thiamine biosynthesis protein (ThiI) AFLV_RS02765 PF02926 THUMP domain AFLV_RS02770 PF00269 Small, acid-soluble spore proteins, alpha/beta type AFLV_RS02775 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS02775 PF00501 AMP-binding enzyme AFLV_RS02780 PF01513 ATP-NAD kinase AFLV_RS02790 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AFLV_RS02795 PF08534 Redoxin AFLV_RS02800 PF02384 N-6 DNA Methylase AFLV_RS02805 PF00871 Acetokinase family AFLV_RS02815 PF00764 Arginosuccinate synthase AFLV_RS02820 PF14698 Argininosuccinate lyase C-terminal AFLV_RS02820 PF00206 Lyase AFLV_RS02825 PF00582 Universal stress protein family AFLV_RS02835 PF01321 Creatinase/Prolidase N-terminal domain AFLV_RS02835 PF00557 Metallopeptidase family M24 AFLV_RS02845 PF03061 Thioesterase superfamily AFLV_RS02845 PF07085 DRTGG domain AFLV_RS02845 PF00392 Bacterial regulatory proteins, gntR family AFLV_RS02845 PF00571 CBS domain AFLV_RS02850 PF14007 YtpI-like protein AFLV_RS02855 PF01368 DHH family AFLV_RS02855 PF02272 DHHA1 domain AFLV_RS02865 PF14034 Sporulation protein YtrH AFLV_RS02870 PF02811 PHP domain AFLV_RS02870 PF01336 OB-fold nucleic acid binding domain AFLV_RS02870 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFLV_RS02870 PF14579 Helix-hairpin-helix motif AFLV_RS02870 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFLV_RS02875 PF03949 Malic enzyme, NAD binding domain AFLV_RS02875 PF00390 Malic enzyme, N-terminal domain AFLV_RS02880 PF00392 Bacterial regulatory proteins, gntR family AFLV_RS02880 PF07729 FCD domain AFLV_RS02885 PF01039 Carboxyl transferase domain AFLV_RS02885 PF17848 Acetyl-coA carboxylase zinc finger domain AFLV_RS02890 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AFLV_RS02895 PF00365 Phosphofructokinase AFLV_RS02900 PF02887 Pyruvate kinase, alpha/beta domain AFLV_RS02900 PF00391 PEP-utilising enzyme, mobile domain AFLV_RS02900 PF00224 Pyruvate kinase, barrel domain AFLV_RS02905 PF04186 FxsA cytoplasmic membrane protein AFLV_RS02910 PF01594 AI-2E family transporter AFLV_RS02915 PF04284 Protein of unknown function (DUF441) AFLV_RS02920 PF00285 Citrate synthase, C-terminal domain AFLV_RS02925 PF00180 Isocitrate/isopropylmalate dehydrogenase AFLV_RS02930 PF00056 lactate/malate dehydrogenase, NAD binding domain AFLV_RS02930 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFLV_RS02940 PF00486 Transcriptional regulatory protein, C terminal AFLV_RS02940 PF00072 Response regulator receiver domain AFLV_RS02945 PF00989 PAS fold AFLV_RS02945 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS02945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS02945 PF16736 Single Cache-like AFLV_RS02950 PF00476 DNA polymerase family A AFLV_RS02950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFLV_RS02950 PF01367 5'-3' exonuclease, C-terminal SAM fold AFLV_RS02955 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFLV_RS02955 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFLV_RS02955 PF06827 Zinc finger found in FPG and IleRS AFLV_RS02960 PF02659 Putative manganese efflux pump AFLV_RS02965 PF01121 Dephospho-CoA kinase AFLV_RS02970 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFLV_RS02970 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFLV_RS02975 PF02675 S-adenosylmethionine decarboxylase AFLV_RS02985 PF03477 ATP cone domain AFLV_RS02990 PF07261 Replication initiation and membrane attachment AFLV_RS02995 PF07319 Primosomal protein DnaI N-terminus AFLV_RS02995 PF01695 IstB-like ATP binding protein AFLV_RS03000 PF08812 YtxC-like family AFLV_RS03005 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFLV_RS03005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFLV_RS03005 PF02824 TGS domain AFLV_RS03005 PF03129 Anticodon binding domain AFLV_RS03010 PF05198 Translation initiation factor IF-3, N-terminal domain AFLV_RS03010 PF00707 Translation initiation factor IF-3, C-terminal domain AFLV_RS03015 PF01632 Ribosomal protein L35 AFLV_RS03020 PF00453 Ribosomal protein L20 AFLV_RS03035 PF05343 M42 glutamyl aminopeptidase AFLV_RS03040 PF00392 Bacterial regulatory proteins, gntR family AFLV_RS03045 PF00596 Class II Aldolase and Adducin N-terminal domain AFLV_RS03050 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFLV_RS03050 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFLV_RS03055 PF11762 L-arabinose isomerase C-terminal domain AFLV_RS03055 PF02610 L-arabinose isomerase AFLV_RS03060 PF04616 Glycosyl hydrolases family 43 AFLV_RS03065 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AFLV_RS03080 PF00356 Bacterial regulatory proteins, lacI family AFLV_RS03085 PF01263 Aldose 1-epimerase AFLV_RS03090 PF14098 Small, acid-soluble spore protein I AFLV_RS03095 PF01625 Peptide methionine sulfoxide reductase AFLV_RS03100 PF00588 SpoU rRNA Methylase family AFLV_RS03100 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFLV_RS03105 PF01409 tRNA synthetases class II core domain (F) AFLV_RS03105 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFLV_RS03110 PF03147 Ferredoxin-fold anticodon binding domain AFLV_RS03110 PF03484 tRNA synthetase B5 domain AFLV_RS03110 PF03483 B3/4 domain AFLV_RS03110 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AFLV_RS03110 PF01588 Putative tRNA binding domain AFLV_RS03125 PF00005 ABC transporter AFLV_RS03150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS03150 PF07730 Histidine kinase AFLV_RS03155 PF00072 Response regulator receiver domain AFLV_RS03155 PF00196 Bacterial regulatory proteins, luxR family AFLV_RS03180 PF12679 ABC-2 family transporter protein AFLV_RS03195 PF03176 MMPL family AFLV_RS03200 PF05164 Cell division protein ZapA AFLV_RS03205 PF02674 Colicin V production protein AFLV_RS03210 PF14791 DNA polymerase beta thumb AFLV_RS03210 PF14716 Helix-hairpin-helix domain AFLV_RS03210 PF02811 PHP domain AFLV_RS03215 PF00488 MutS domain V AFLV_RS03215 PF01713 Smr domain AFLV_RS03220 PF03994 Domain of Unknown Function (DUF350) AFLV_RS03225 PF00501 AMP-binding enzyme AFLV_RS03225 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS03230 PF08359 YsiA-like protein, C-terminal region AFLV_RS03230 PF00440 Bacterial regulatory proteins, tetR family AFLV_RS03235 PF00378 Enoyl-CoA hydratase/isomerase AFLV_RS03240 PF01012 Electron transfer flavoprotein domain AFLV_RS03245 PF00766 Electron transfer flavoprotein FAD-binding domain AFLV_RS03245 PF01012 Electron transfer flavoprotein domain AFLV_RS03250 PF00085 Thioredoxin AFLV_RS03260 PF16363 GDP-mannose 4,6 dehydratase AFLV_RS03275 PF00535 Glycosyl transferase family 2 AFLV_RS03275 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AFLV_RS03295 PF02151 UvrB/uvrC motif AFLV_RS03295 PF08459 UvrC Helix-hairpin-helix N-terminal AFLV_RS03295 PF01541 GIY-YIG catalytic domain AFLV_RS03300 PF10702 Protein of unknown function (DUF2507) AFLV_RS03305 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFLV_RS03310 PF02910 Fumarate reductase flavoprotein C-term AFLV_RS03310 PF00890 FAD binding domain AFLV_RS03315 PF13085 2Fe-2S iron-sulfur cluster binding domain AFLV_RS03315 PF13183 4Fe-4S dicluster domain AFLV_RS03320 PF03061 Thioesterase superfamily AFLV_RS03325 PF00196 Bacterial regulatory proteins, luxR family AFLV_RS03330 PF01177 Asp/Glu/Hydantoin racemase AFLV_RS03335 PF10646 Sporulation and spore germination AFLV_RS03340 PF01138 3' exoribonuclease family, domain 1 AFLV_RS03340 PF03725 3' exoribonuclease family, domain 2 AFLV_RS03345 PF01725 Ham1 family AFLV_RS03350 PF12850 Calcineurin-like phosphoesterase superfamily domain AFLV_RS03360 PF01063 Amino-transferase class IV AFLV_RS03365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFLV_RS03365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFLV_RS03365 PF00205 Thiamine pyrophosphate enzyme, central domain AFLV_RS03370 PF10369 Small subunit of acetolactate synthase AFLV_RS03370 PF01842 ACT domain AFLV_RS03375 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFLV_RS03375 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AFLV_RS03380 PF00682 HMGL-like AFLV_RS03380 PF08502 LeuA allosteric (dimerisation) domain AFLV_RS03385 PF00180 Isocitrate/isopropylmalate dehydrogenase AFLV_RS03390 PF00330 Aconitase family (aconitate hydratase) AFLV_RS03395 PF00694 Aconitase C-terminal domain AFLV_RS03405 PF05698 Bacterial trigger factor protein (TF) C-terminus AFLV_RS03405 PF05697 Bacterial trigger factor protein (TF) AFLV_RS03405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFLV_RS03410 PF07724 AAA domain (Cdc48 subfamily) AFLV_RS03410 PF10431 C-terminal, D2-small domain, of ClpB protein AFLV_RS03410 PF06689 ClpX C4-type zinc finger AFLV_RS03415 PF05362 Lon protease (S16) C-terminal proteolytic domain AFLV_RS03415 PF00004 ATPase family associated with various cellular activities (AAA) AFLV_RS03420 PF02190 ATP-dependent protease La (LON) substrate-binding domain AFLV_RS03420 PF05362 Lon protease (S16) C-terminal proteolytic domain AFLV_RS03420 PF00004 ATPase family associated with various cellular activities (AAA) AFLV_RS03425 PF01926 50S ribosome-binding GTPase AFLV_RS03435 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFLV_RS03435 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFLV_RS03435 PF01488 Shikimate / quinate 5-dehydrogenase AFLV_RS03440 PF01578 Cytochrome C assembly protein AFLV_RS03445 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFLV_RS03445 PF03900 Porphobilinogen deaminase, C-terminal domain AFLV_RS03450 PF02602 Uroporphyrinogen-III synthase HemD AFLV_RS03455 PF00490 Delta-aminolevulinic acid dehydratase AFLV_RS03460 PF00202 Aminotransferase class-III AFLV_RS03465 PF01476 LysM domain AFLV_RS03465 PF01476 LysM domain AFLV_RS03480 PF08264 Anticodon-binding domain of tRNA AFLV_RS03480 PF00133 tRNA synthetases class I (I, L, M and V) AFLV_RS03480 PF10458 Valyl tRNA synthetase tRNA binding arm AFLV_RS03485 PF02875 Mur ligase family, glutamate ligase domain AFLV_RS03485 PF08245 Mur ligase middle domain AFLV_RS03530 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFLV_RS03530 PF00437 Type II/IV secretion system protein AFLV_RS03535 PF00437 Type II/IV secretion system protein AFLV_RS03540 PF00482 Type II secretion system (T2SS), protein F AFLV_RS03545 PF07963 Prokaryotic N-terminal methylation motif AFLV_RS03545 PF00114 Pilin (bacterial filament) AFLV_RS03550 PF06750 Bacterial Peptidase A24 N-terminal domain AFLV_RS03550 PF01478 Type IV leader peptidase family AFLV_RS03580 PF02545 Maf-like protein AFLV_RS03590 PF00239 Resolvase, N terminal domain AFLV_RS03590 PF02796 Helix-turn-helix domain of resolvase AFLV_RS03595 PF01726 LexA DNA binding domain AFLV_RS03595 PF00717 Peptidase S24-like AFLV_RS03690 PF08281 Sigma-70, region 4 AFLV_RS03810 PF13539 D-alanyl-D-alanine carboxypeptidase AFLV_RS03830 PF01580 FtsK/SpoIIIE family AFLV_RS03840 PF04002 RadC-like JAB domain AFLV_RS03850 PF04085 rod shape-determining protein MreC AFLV_RS03860 PF03775 Septum formation inhibitor MinC, C-terminal domain AFLV_RS03865 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFLV_RS03870 PF01551 Peptidase family M23 AFLV_RS03875 PF02163 Peptidase family M50 AFLV_RS03880 PF00829 Ribosomal prokaryotic L21 protein AFLV_RS03885 PF04327 Cysteine protease Prp AFLV_RS03890 PF01016 Ribosomal L27 protein AFLV_RS03895 PF14682 Sporulation initiation phospho-transferase B, C-terminal AFLV_RS03895 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFLV_RS03900 PF01018 GTP1/OBG AFLV_RS03900 PF01926 50S ribosome-binding GTPase AFLV_RS03900 PF09269 Domain of unknown function (DUF1967) AFLV_RS03905 PF01842 ACT domain AFLV_RS03910 PF01842 ACT domain AFLV_RS03910 PF00800 Prephenate dehydratase AFLV_RS03915 PF02829 3H domain AFLV_RS03915 PF08279 HTH domain AFLV_RS03920 PF00266 Aminotransferase class-V AFLV_RS03925 PF02910 Fumarate reductase flavoprotein C-term AFLV_RS03925 PF00890 FAD binding domain AFLV_RS03930 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFLV_RS03930 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFLV_RS03935 PF02445 Quinolinate synthetase A protein AFLV_RS03940 PF01476 LysM domain AFLV_RS03945 PF02540 NAD synthase AFLV_RS03950 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AFLV_RS03955 PF01709 Transcriptional regulator AFLV_RS03960 PF08977 Bypass of Forespore C, N terminal AFLV_RS03960 PF08955 BofC C-terminal domain AFLV_RS03965 PF07499 RuvA, C-terminal domain AFLV_RS03965 PF01330 RuvA N terminal domain AFLV_RS03970 PF17864 RuvB AAA lid domain AFLV_RS03970 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFLV_RS03970 PF05491 RuvB C-terminal winged helix domain AFLV_RS03975 PF07282 Putative transposase DNA-binding domain AFLV_RS03975 PF01385 Probable transposase AFLV_RS03975 PF12323 Helix-turn-helix domain AFLV_RS03980 PF11146 Protein of unknown function (DUF2905) AFLV_RS03985 PF02547 Queuosine biosynthesis protein AFLV_RS03990 PF01702 Queuine tRNA-ribosyltransferase AFLV_RS03995 PF02699 Preprotein translocase subunit AFLV_RS04000 PF12670 Protein of unknown function (DUF3792) AFLV_RS04005 PF04239 Protein of unknown function (DUF421) AFLV_RS04010 PF14667 Polysaccharide biosynthesis C-terminal domain AFLV_RS04010 PF01943 Polysaccharide biosynthesis protein AFLV_RS04015 PF13797 Post-transcriptional regulator AFLV_RS04020 PF02355 Protein export membrane protein AFLV_RS04020 PF07549 SecD/SecF GG Motif AFLV_RS04025 PF01545 Cation efflux family AFLV_RS04025 PF16916 Dimerisation domain of Zinc Transporter AFLV_RS04030 PF01368 DHH family AFLV_RS04030 PF02272 DHHA1 domain AFLV_RS04030 PF17768 RecJ OB domain AFLV_RS04030 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AFLV_RS04035 PF00156 Phosphoribosyl transferase domain AFLV_RS04040 PF02824 TGS domain AFLV_RS04040 PF04607 Region found in RelA / SpoT proteins AFLV_RS04040 PF13291 ACT domain AFLV_RS04045 PF02580 D-Tyr-tRNA(Tyr) deacylase AFLV_RS04055 PF08239 Bacterial SH3 domain AFLV_RS04055 PF01520 N-acetylmuramoyl-L-alanine amidase AFLV_RS04060 PF13393 Histidyl-tRNA synthetase AFLV_RS04060 PF03129 Anticodon binding domain AFLV_RS04065 PF00152 tRNA synthetases class II (D, K and N) AFLV_RS04065 PF02938 GAD domain AFLV_RS04065 PF01336 OB-fold nucleic acid binding domain AFLV_RS04070 PF00899 ThiF family AFLV_RS04075 PF00873 AcrB/AcrD/AcrF family AFLV_RS04080 PF00440 Bacterial regulatory proteins, tetR family AFLV_RS04085 PF16193 AAA C-terminal domain AFLV_RS04085 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFLV_RS04085 PF12002 MgsA AAA+ ATPase C terminal AFLV_RS04090 PF02082 Transcriptional regulator AFLV_RS04095 PF00266 Aminotransferase class-V AFLV_RS04110 PF13538 UvrD-like helicase C-terminal domain AFLV_RS04110 PF14490 Helix-hairpin-helix containing domain AFLV_RS04110 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AFLV_RS04120 PF01594 AI-2E family transporter AFLV_RS04125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFLV_RS04125 PF01411 tRNA synthetases class II (A) AFLV_RS04125 PF02272 DHHA1 domain AFLV_RS04130 PF06135 IreB regulatory phosphoprotein AFLV_RS04135 PF03652 Holliday junction resolvase AFLV_RS04140 PF06949 Protein of unknown function (DUF1292) AFLV_RS04145 PF02618 YceG-like family AFLV_RS04150 PF01596 O-methyltransferase AFLV_RS04155 PF01136 Peptidase family U32 AFLV_RS04160 PF01136 Peptidase family U32 AFLV_RS04160 PF16325 Peptidase family U32 C-terminal domain AFLV_RS04165 PF00485 Phosphoribulokinase / Uridine kinase family AFLV_RS04170 PF03449 Transcription elongation factor, N-terminal AFLV_RS04170 PF01272 Transcription elongation factor, GreA/GreB, C-term AFLV_RS04175 PF03717 Penicillin-binding Protein dimerisation domain AFLV_RS04175 PF00905 Penicillin binding protein transpeptidase domain AFLV_RS04180 PF07423 Domain of unknown function (DUF1510) AFLV_RS04195 PF13649 Methyltransferase domain AFLV_RS04200 PF01048 Phosphorylase superfamily AFLV_RS04205 PF00291 Pyridoxal-phosphate dependent enzyme AFLV_RS04210 PF01053 Cys/Met metabolism PLP-dependent enzyme AFLV_RS04220 PF00565 Staphylococcal nuclease homologue AFLV_RS04245 PF00270 DEAD/DEAH box helicase AFLV_RS04245 PF18019 HD domain AFLV_RS04245 PF18395 Cas3 C-terminal domain AFLV_RS04255 PF01867 CRISPR associated protein Cas1 AFLV_RS04260 PF09827 CRISPR associated protein Cas2 AFLV_RS04285 PF04542 Sigma-70 region 2 AFLV_RS04285 PF04545 Sigma-70, region 4 AFLV_RS04300 PF01381 Helix-turn-helix AFLV_RS04415 PF13408 Recombinase zinc beta ribbon domain AFLV_RS04415 PF00239 Resolvase, N terminal domain AFLV_RS04415 PF07508 Recombinase AFLV_RS04420 PF04542 Sigma-70 region 2 AFLV_RS04420 PF04545 Sigma-70, region 4 AFLV_RS04425 PF02386 Cation transport protein AFLV_RS04430 PF13677 Membrane MotB of proton-channel complex MotA/MotB AFLV_RS04430 PF00691 OmpA family AFLV_RS04435 PF01618 MotA/TolQ/ExbB proton channel family AFLV_RS04440 PF01066 CDP-alcohol phosphatidyltransferase AFLV_RS04445 PF02666 Phosphatidylserine decarboxylase AFLV_RS04450 PF08970 Sporulation inhibitor A AFLV_RS04460 PF01926 50S ribosome-binding GTPase AFLV_RS04465 PF01488 Shikimate / quinate 5-dehydrogenase AFLV_RS04465 PF08501 Shikimate dehydrogenase substrate binding domain AFLV_RS04465 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFLV_RS04470 PF01985 CRS1 / YhbY (CRM) domain AFLV_RS04475 PF01467 Cytidylyltransferase-like AFLV_RS04480 PF01966 HD domain AFLV_RS04490 PF13649 Methyltransferase domain AFLV_RS04495 PF03807 NADP oxidoreductase coenzyme F420-dependent AFLV_RS04495 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFLV_RS04500 PF10531 SLBB domain AFLV_RS04505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFLV_RS04510 PF13567 Domain of unknown function (DUF4131) AFLV_RS04510 PF03772 Competence protein AFLV_RS04510 PF00753 Metallo-beta-lactamase superfamily AFLV_RS04520 PF06144 DNA polymerase III, delta subunit AFLV_RS04525 PF00027 Cyclic nucleotide-binding domain AFLV_RS04525 PF00325 Bacterial regulatory proteins, crp family AFLV_RS04530 PF01649 Ribosomal protein S20 AFLV_RS04535 PF03418 Germination protease AFLV_RS04540 PF07454 Stage II sporulation protein P (SpoIIP) AFLV_RS04550 PF00009 Elongation factor Tu GTP binding domain AFLV_RS04550 PF03144 Elongation factor Tu domain 2 AFLV_RS04550 PF06421 GTP-binding protein LepA C-terminus AFLV_RS04550 PF00679 Elongation factor G C-terminus AFLV_RS04555 PF04055 Radical SAM superfamily AFLV_RS04555 PF06969 HemN C-terminal domain AFLV_RS04560 PF01628 HrcA protein C terminal domain AFLV_RS04565 PF01025 GrpE AFLV_RS04570 PF00012 Hsp70 protein AFLV_RS04575 PF00684 DnaJ central domain AFLV_RS04575 PF01556 DnaJ C terminal domain AFLV_RS04575 PF00226 DnaJ domain AFLV_RS04585 PF04452 RNA methyltransferase AFLV_RS04590 PF00919 Uncharacterized protein family UPF0004 AFLV_RS04590 PF01938 TRAM domain AFLV_RS04590 PF04055 Radical SAM superfamily AFLV_RS04595 PF01165 Ribosomal protein S21 AFLV_RS04600 PF09424 Yqey-like protein AFLV_RS04605 PF01957 NfeD-like C-terminal, partner-binding AFLV_RS04605 PF01972 Serine dehydrogenase proteinase AFLV_RS04610 PF12127 SigmaW regulon antibacterial AFLV_RS04620 PF07873 YabP family AFLV_RS04625 PF06898 Putative stage IV sporulation protein YqfD AFLV_RS04630 PF02562 PhoH-like protein AFLV_RS04635 PF02130 Uncharacterized protein family UPF0054 AFLV_RS04640 PF01219 Prokaryotic diacylglycerol kinase AFLV_RS04645 PF07650 KH domain AFLV_RS04645 PF01926 50S ribosome-binding GTPase AFLV_RS04650 PF11967 Recombination protein O N terminal AFLV_RS04650 PF02565 Recombination protein O C terminal AFLV_RS04655 PF00571 CBS domain AFLV_RS04655 PF08279 HTH domain AFLV_RS04660 PF03618 Kinase/pyrophosphorylase AFLV_RS04665 PF01807 CHC2 zinc finger AFLV_RS04665 PF08275 DNA primase catalytic core, N-terminal domain AFLV_RS04665 PF10410 DnaB-helicase binding domain of primase AFLV_RS04670 PF04539 Sigma-70 region 3 AFLV_RS04670 PF04542 Sigma-70 region 2 AFLV_RS04670 PF04545 Sigma-70, region 4 AFLV_RS04670 PF00140 Sigma-70 factor, region 1.2 AFLV_RS04670 PF03979 Sigma-70 factor, region 1.1 AFLV_RS04680 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFLV_RS04685 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AFLV_RS04690 PF01784 NIF3 (NGG1p interacting factor 3) AFLV_RS04695 PF02401 LytB protein AFLV_RS04705 PF00271 Helicase conserved C-terminal domain AFLV_RS04705 PF00270 DEAD/DEAH box helicase AFLV_RS04710 PF01261 Xylose isomerase-like TIM barrel AFLV_RS04720 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AFLV_RS04720 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AFLV_RS04725 PF00005 ABC transporter AFLV_RS04730 PF00950 ABC 3 transport family AFLV_RS04735 PF01475 Ferric uptake regulator family AFLV_RS04750 PF04551 GcpE protein AFLV_RS04760 PF02743 Cache domain AFLV_RS04760 PF00672 HAMP domain AFLV_RS04760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS04765 PF06691 Protein of unknown function (DUF1189) AFLV_RS04775 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFLV_RS04775 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFLV_RS04780 PF07690 Major Facilitator Superfamily AFLV_RS04785 PF00905 Penicillin binding protein transpeptidase domain AFLV_RS04785 PF03717 Penicillin-binding Protein dimerisation domain AFLV_RS04790 PF12849 PBP superfamily domain AFLV_RS04795 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS04800 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS04805 PF00005 ABC transporter AFLV_RS04810 PF01895 PhoU domain AFLV_RS04825 PF00483 Nucleotidyl transferase AFLV_RS04830 PF00471 Ribosomal protein L33 AFLV_RS04835 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFLV_RS04840 PF00056 lactate/malate dehydrogenase, NAD binding domain AFLV_RS04840 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFLV_RS04850 PF01694 Rhomboid family AFLV_RS04860 PF03323 Bacillus/Clostridium GerA spore germination protein AFLV_RS04865 PF06014 Bacterial protein of unknown function (DUF910) AFLV_RS04870 PF00480 ROK family AFLV_RS04875 PF00884 Sulfatase AFLV_RS04880 PF00246 Zinc carboxypeptidase AFLV_RS04880 PF01476 LysM domain AFLV_RS04890 PF00753 Metallo-beta-lactamase superfamily AFLV_RS04900 PF11117 Protein of unknown function (DUF2626) AFLV_RS04910 PF03960 ArsC family AFLV_RS04915 PF00437 Type II/IV secretion system protein AFLV_RS04920 PF00482 Type II secretion system (T2SS), protein F AFLV_RS04925 PF07963 Prokaryotic N-terminal methylation motif AFLV_RS04930 PF07963 Prokaryotic N-terminal methylation motif AFLV_RS04950 PF01202 Shikimate kinase AFLV_RS04955 PF14038 YqzE-like protein AFLV_RS04960 PF11079 Bacterial protein YqhG of unknown function AFLV_RS04965 PF00176 SNF2 family N-terminal domain AFLV_RS04965 PF00271 Helicase conserved C-terminal domain AFLV_RS04970 PF01571 Aminomethyltransferase folate-binding domain AFLV_RS04970 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFLV_RS04975 PF02347 Glycine cleavage system P-protein AFLV_RS04980 PF02347 Glycine cleavage system P-protein AFLV_RS04985 PF00581 Rhodanese-like domain AFLV_RS04990 PF03099 Biotin/lipoate A/B protein ligase family AFLV_RS04995 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AFLV_RS04995 PF02867 Ribonucleotide reductase, barrel domain AFLV_RS05000 PF03477 ATP cone domain AFLV_RS05000 PF02867 Ribonucleotide reductase, barrel domain AFLV_RS05000 PF00317 Ribonucleotide reductase, all-alpha domain AFLV_RS05010 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFLV_RS05010 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFLV_RS05015 PF01734 Patatin-like phospholipase AFLV_RS05025 PF07136 Protein of unknown function (DUF1385) AFLV_RS05030 PF11085 Conserved membrane protein YqhR AFLV_RS05035 PF01220 Dehydroquinase class II AFLV_RS05040 PF00557 Metallopeptidase family M24 AFLV_RS05040 PF01321 Creatinase/Prolidase N-terminal domain AFLV_RS05045 PF01132 Elongation factor P (EF-P) OB domain AFLV_RS05045 PF09285 Elongation factor P, C-terminal AFLV_RS05045 PF08207 Elongation factor P (EF-P) KOW-like domain AFLV_RS05060 PF10942 Protein of unknown function (DUF2619) AFLV_RS05070 PF09548 Stage III sporulation protein AB (spore_III_AB) AFLV_RS05075 PF06686 Stage III sporulation protein AC/AD protein family AFLV_RS05080 PF06686 Stage III sporulation protein AC/AD protein family AFLV_RS05085 PF09546 Stage III sporulation protein AE (spore_III_AE) AFLV_RS05090 PF09581 Stage III sporulation protein AF (Spore_III_AF) AFLV_RS05100 PF12685 SpoIIIAH-like protein AFLV_RS05105 PF00364 Biotin-requiring enzyme AFLV_RS05110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFLV_RS05110 PF00289 Biotin carboxylase, N-terminal domain AFLV_RS05110 PF02785 Biotin carboxylase C-terminal domain AFLV_RS05115 PF03780 Asp23 family, cell envelope-related function AFLV_RS05120 PF01029 NusB family AFLV_RS05125 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFLV_RS05125 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFLV_RS05130 PF13742 OB-fold nucleic acid binding domain AFLV_RS05130 PF02601 Exonuclease VII, large subunit AFLV_RS05135 PF02609 Exonuclease VII small subunit AFLV_RS05140 PF00348 Polyprenyl synthetase AFLV_RS05145 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFLV_RS05145 PF02779 Transketolase, pyrimidine binding domain AFLV_RS05145 PF02780 Transketolase, C-terminal domain AFLV_RS05150 PF01479 S4 domain AFLV_RS05150 PF01728 FtsJ-like methyltransferase AFLV_RS05155 PF01316 Arginine repressor, DNA binding domain AFLV_RS05155 PF02863 Arginine repressor, C-terminal domain AFLV_RS05160 PF13476 AAA domain AFLV_RS05165 PF17820 PDZ domain AFLV_RS05165 PF05580 SpoIVB peptidase S55 AFLV_RS05170 PF08769 Sporulation initiation factor Spo0A C terminal AFLV_RS05170 PF00072 Response regulator receiver domain AFLV_RS05175 PF03009 Glycerophosphoryl diester phosphodiesterase family AFLV_RS05180 PF11118 Protein of unknown function (DUF2627) AFLV_RS05185 PF00158 Sigma-54 interaction domain AFLV_RS05185 PF00989 PAS fold AFLV_RS05185 PF02954 Bacterial regulatory protein, Fis family AFLV_RS05190 PF01515 Phosphate acetyl/butaryl transferase AFLV_RS05195 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFLV_RS05195 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFLV_RS05200 PF00871 Acetokinase family AFLV_RS05205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFLV_RS05205 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS05210 PF00676 Dehydrogenase E1 component AFLV_RS05215 PF02779 Transketolase, pyrimidine binding domain AFLV_RS05215 PF02780 Transketolase, C-terminal domain AFLV_RS05220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFLV_RS05220 PF02817 e3 binding domain AFLV_RS05220 PF00364 Biotin-requiring enzyme AFLV_RS05225 PF01642 Methylmalonyl-CoA mutase AFLV_RS05230 PF01642 Methylmalonyl-CoA mutase AFLV_RS05230 PF02310 B12 binding domain AFLV_RS05240 PF11728 Putative aromatic acid exporter C-terminal domain AFLV_RS05240 PF06081 Aromatic acid exporter family member 1 AFLV_RS05245 PF03734 L,D-transpeptidase catalytic domain AFLV_RS05255 PF01039 Carboxyl transferase domain AFLV_RS05265 PF01546 Peptidase family M20/M25/M40 AFLV_RS05265 PF07687 Peptidase dimerisation domain AFLV_RS05270 PF01584 CheW-like domain AFLV_RS05275 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFLV_RS05275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFLV_RS05280 PF04199 Putative cyclase AFLV_RS05285 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFLV_RS05285 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFLV_RS05290 PF00753 Metallo-beta-lactamase superfamily AFLV_RS05290 PF12706 Beta-lactamase superfamily domain AFLV_RS05300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFLV_RS05305 PF03807 NADP oxidoreductase coenzyme F420-dependent AFLV_RS05305 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFLV_RS05310 PF00753 Metallo-beta-lactamase superfamily AFLV_RS05315 PF00106 short chain dehydrogenase AFLV_RS05320 PF01521 Iron-sulphur cluster biosynthesis AFLV_RS05330 PF10827 Protein of unknown function (DUF2552) AFLV_RS05340 PF00248 Aldo/keto reductase family AFLV_RS05345 PF00293 NUDIX domain AFLV_RS05350 PF01944 Stage II sporulation protein M AFLV_RS05360 PF01475 Ferric uptake regulator family AFLV_RS05365 PF14004 Protein of unknown function (DUF4227) AFLV_RS05370 PF02899 Phage integrase, N-terminal SAM-like domain AFLV_RS05370 PF00589 Phage integrase family AFLV_RS05375 PF01676 Metalloenzyme superfamily AFLV_RS05380 PF01048 Phosphorylase superfamily AFLV_RS05385 PF02885 Glycosyl transferase family, helical bundle domain AFLV_RS05385 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AFLV_RS05385 PF00591 Glycosyl transferase family, a/b domain AFLV_RS05390 PF00768 D-alanyl-D-alanine carboxypeptidase AFLV_RS05390 PF07943 Penicillin-binding protein 5, C-terminal domain AFLV_RS05395 PF01740 STAS domain AFLV_RS05400 PF13581 Histidine kinase-like ATPase domain AFLV_RS05405 PF04542 Sigma-70 region 2 AFLV_RS05405 PF04539 Sigma-70 region 3 AFLV_RS05405 PF04545 Sigma-70, region 4 AFLV_RS05410 PF12164 Stage V sporulation protein AA AFLV_RS05415 PF13782 Stage V sporulation protein AB AFLV_RS05425 PF07451 Stage V sporulation protein AD (SpoVAD) AFLV_RS05430 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AFLV_RS05435 PF14097 Stage V sporulation protein AE1 AFLV_RS05440 PF03323 Bacillus/Clostridium GerA spore germination protein AFLV_RS05445 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFLV_RS05445 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFLV_RS05450 PF06207 Protein of unknown function (DUF1002) AFLV_RS05455 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFLV_RS05460 PF01872 RibD C-terminal domain AFLV_RS05460 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFLV_RS05465 PF00677 Lumazine binding domain AFLV_RS05470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFLV_RS05470 PF00925 GTP cyclohydrolase II AFLV_RS05475 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFLV_RS05480 PF00583 Acetyltransferase (GNAT) family AFLV_RS05485 PF03745 Domain of unknown function (DUF309) AFLV_RS05490 PF02616 Segregation and condensation protein ScpA AFLV_RS05495 PF04079 Segregation and condensation complex subunit ScpB AFLV_RS05505 PF01212 Beta-eliminating lyase AFLV_RS05515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFLV_RS05515 PF18603 L-amino acid ligase C-terminal domain 2 AFLV_RS05540 PF13047 Protein of unknown function (DUF3907) AFLV_RS05545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFLV_RS05545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFLV_RS05550 PF00768 D-alanyl-D-alanine carboxypeptidase AFLV_RS05550 PF07943 Penicillin-binding protein 5, C-terminal domain AFLV_RS05555 PF07670 Nucleoside recognition AFLV_RS05560 PF07670 Nucleoside recognition AFLV_RS05565 PF01479 S4 domain AFLV_RS05565 PF00849 RNA pseudouridylate synthase AFLV_RS05570 PF00578 AhpC/TSA family AFLV_RS05575 PF05140 ResB-like family AFLV_RS05580 PF01578 Cytochrome C assembly protein AFLV_RS05585 PF00486 Transcriptional regulatory protein, C terminal AFLV_RS05585 PF00072 Response regulator receiver domain AFLV_RS05590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS05590 PF00989 PAS fold AFLV_RS05590 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS05590 PF00672 HAMP domain AFLV_RS05590 PF18698 Histidine kinase sensor domain AFLV_RS05595 PF01497 Periplasmic binding protein AFLV_RS05600 PF01032 FecCD transport family AFLV_RS05605 PF00005 ABC transporter AFLV_RS05610 PF03186 CobD/Cbib protein AFLV_RS05615 PF00155 Aminotransferase class I and II AFLV_RS05625 PF02654 Cobalamin-5-phosphate synthase AFLV_RS05640 PF01923 Cobalamin adenosyltransferase AFLV_RS05655 PF02811 PHP domain AFLV_RS05660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFLV_RS05660 PF01842 ACT domain AFLV_RS05660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFLV_RS05665 PF00719 Inorganic pyrophosphatase AFLV_RS05675 PF14493 Helix-turn-helix domain AFLV_RS05680 PF00270 DEAD/DEAH box helicase AFLV_RS05680 PF00271 Helicase conserved C-terminal domain AFLV_RS05685 PF02517 CPBP intramembrane metalloprotease AFLV_RS05695 PF10864 Protein of unknown function (DUF2663) AFLV_RS05705 PF00149 Calcineurin-like phosphoesterase AFLV_RS05710 PF13411 MerR HTH family regulatory protein AFLV_RS05715 PF05389 Negative regulator of genetic competence (MecA) AFLV_RS05720 PF02585 GlcNAc-PI de-N-acetylase AFLV_RS05725 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFLV_RS05725 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFLV_RS05740 PF00202 Aminotransferase class-III AFLV_RS05745 PF14620 YpeB sporulation AFLV_RS05745 PF03413 Peptidase propeptide and YPEB domain AFLV_RS05750 PF01471 Putative peptidoglycan binding domain AFLV_RS05750 PF07486 Cell Wall Hydrolase AFLV_RS05755 PF13367 PrsW family intramembrane metalloprotease AFLV_RS05760 PF12945 Flagellar protein YcgR AFLV_RS05760 PF07238 PilZ domain AFLV_RS05770 PF02224 Cytidylate kinase AFLV_RS05775 PF01553 Acyltransferase AFLV_RS05780 PF00575 S1 RNA binding domain AFLV_RS05785 PF01070 FMN-dependent dehydrogenase AFLV_RS05795 PF14045 YIEGIA protein AFLV_RS05805 PF01926 50S ribosome-binding GTPase AFLV_RS05805 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFLV_RS05810 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFLV_RS05810 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFLV_RS05815 PF10966 Protein of unknown function (DUF2768) AFLV_RS05825 PF09547 Stage IV sporulation protein A (spore_IV_A) AFLV_RS05830 PF00216 Bacterial DNA-binding protein AFLV_RS05835 PF01227 GTP cyclohydrolase I AFLV_RS05840 PF02081 Tryptophan RNA-binding attenuator protein AFLV_RS05845 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 AFLV_RS05850 PF01209 ubiE/COQ5 methyltransferase family AFLV_RS05855 PF00348 Polyprenyl synthetase AFLV_RS05860 PF00334 Nucleoside diphosphate kinase AFLV_RS05865 PF01739 CheR methyltransferase, SAM binding domain AFLV_RS05865 PF03705 CheR methyltransferase, all-alpha domain AFLV_RS05870 PF01264 Chorismate synthase AFLV_RS05875 PF01761 3-dehydroquinate synthase AFLV_RS05880 PF07736 Chorismate mutase type I AFLV_RS05885 PF04715 Anthranilate synthase component I, N terminal region AFLV_RS05885 PF00425 chorismate binding enzyme AFLV_RS05890 PF02885 Glycosyl transferase family, helical bundle domain AFLV_RS05890 PF00591 Glycosyl transferase family, a/b domain AFLV_RS05895 PF00218 Indole-3-glycerol phosphate synthase AFLV_RS05900 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFLV_RS05905 PF00291 Pyridoxal-phosphate dependent enzyme AFLV_RS05910 PF00290 Tryptophan synthase alpha chain AFLV_RS05915 PF00155 Aminotransferase class I and II AFLV_RS05920 PF02153 Prephenate dehydrogenase AFLV_RS05920 PF01842 ACT domain AFLV_RS05925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFLV_RS05935 PF08858 IDEAL domain AFLV_RS05935 PF08864 UPF0302 domain AFLV_RS05940 PF10673 Protein of unknown function (DUF2487) AFLV_RS05945 PF00355 Rieske [2Fe-2S] domain AFLV_RS05950 PF00033 Cytochrome b/b6/petB AFLV_RS05955 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFLV_RS05955 PF00032 Cytochrome b(C-terminal)/b6/petD AFLV_RS05960 PF07187 Protein of unknown function (DUF1405) AFLV_RS05965 PF09577 Sporulation protein YpjB (SpoYpjB) AFLV_RS05970 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AFLV_RS05970 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AFLV_RS05975 PF03819 MazG nucleotide pyrophosphohydrolase domain AFLV_RS05980 PF05173 Dihydrodipicolinate reductase, C-terminus AFLV_RS05980 PF01113 Dihydrodipicolinate reductase, N-terminus AFLV_RS05985 PF02142 MGS-like domain AFLV_RS05990 PF02585 GlcNAc-PI de-N-acetylase AFLV_RS05995 PF00534 Glycosyl transferases group 1 AFLV_RS05995 PF13439 Glycosyltransferase Family 4 AFLV_RS06000 PF13735 tRNA nucleotidyltransferase domain 2 putative AFLV_RS06000 PF01743 Poly A polymerase head domain AFLV_RS06000 PF12627 Probable RNA and SrmB- binding site of polymerase A AFLV_RS06005 PF02237 Biotin protein ligase C terminal domain AFLV_RS06005 PF08279 HTH domain AFLV_RS06005 PF03099 Biotin/lipoate A/B protein ligase family AFLV_RS06010 PF02548 Ketopantoate hydroxymethyltransferase AFLV_RS06015 PF02569 Pantoate-beta-alanine ligase AFLV_RS06020 PF02261 Aspartate decarboxylase AFLV_RS06025 PF00929 Exonuclease AFLV_RS06025 PF13307 Helicase C-terminal domain AFLV_RS06025 PF04851 Type III restriction enzyme, res subunit AFLV_RS06040 PF00155 Aminotransferase class I and II AFLV_RS06045 PF01336 OB-fold nucleic acid binding domain AFLV_RS06045 PF00152 tRNA synthetases class II (D, K and N) AFLV_RS06050 PF07261 Replication initiation and membrane attachment AFLV_RS06055 PF00633 Helix-hairpin-helix motif AFLV_RS06055 PF10576 Iron-sulfur binding domain of endonuclease III AFLV_RS06055 PF00730 HhH-GPD superfamily base excision DNA repair protein AFLV_RS06065 PF00905 Penicillin binding protein transpeptidase domain AFLV_RS06065 PF00912 Transglycosylase AFLV_RS06070 PF03838 Recombination protein U AFLV_RS06075 PF01740 STAS domain AFLV_RS06075 PF00916 Sulfate permease family AFLV_RS06110 PF01266 FAD dependent oxidoreductase AFLV_RS06110 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AFLV_RS06115 PF12787 EcsC protein family AFLV_RS06120 PF00011 Hsp20/alpha crystallin family AFLV_RS06135 PF07694 5TMR of 5TMR-LYT AFLV_RS06135 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS06140 PF02073 Thermophilic metalloprotease (M29) AFLV_RS06150 PF02595 Glycerate kinase family AFLV_RS06155 PF03707 Bacterial signalling protein N terminal repeat AFLV_RS06155 PF00563 EAL domain AFLV_RS06155 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS06160 PF00005 ABC transporter AFLV_RS06165 PF01497 Periplasmic binding protein AFLV_RS06170 PF01032 FecCD transport family AFLV_RS06175 PF01032 FecCD transport family AFLV_RS06180 PF00155 Aminotransferase class I and II AFLV_RS06185 PF00561 alpha/beta hydrolase fold AFLV_RS06190 PF13847 Methyltransferase domain AFLV_RS06195 PF02675 S-adenosylmethionine decarboxylase AFLV_RS06200 PF02254 TrkA-N domain AFLV_RS06200 PF00999 Sodium/hydrogen exchanger family AFLV_RS06200 PF02080 TrkA-C domain AFLV_RS06210 PF04851 Type III restriction enzyme, res subunit AFLV_RS06210 PF00271 Helicase conserved C-terminal domain AFLV_RS06235 PF13361 UvrD-like helicase C-terminal domain AFLV_RS06235 PF00580 UvrD/REP helicase N-terminal domain AFLV_RS06240 PF01555 DNA methylase AFLV_RS06255 PF13180 PDZ domain AFLV_RS06265 PF13276 HTH-like domain AFLV_RS06265 PF13333 Integrase core domain AFLV_RS06265 PF00665 Integrase core domain AFLV_RS06270 PF12833 Helix-turn-helix domain AFLV_RS06275 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFLV_RS06275 PF13378 Enolase C-terminal domain-like AFLV_RS06280 PF00171 Aldehyde dehydrogenase family AFLV_RS06285 PF10415 Fumarase C C-terminus AFLV_RS06285 PF00206 Lyase AFLV_RS06290 PF00171 Aldehyde dehydrogenase family AFLV_RS06295 PF08240 Alcohol dehydrogenase GroES-like domain AFLV_RS06295 PF00107 Zinc-binding dehydrogenase AFLV_RS06305 PF02028 BCCT, betaine/carnitine/choline family transporter AFLV_RS06340 PF01555 DNA methylase AFLV_RS06345 PF02086 D12 class N6 adenine-specific DNA methyltransferase AFLV_RS06365 PF01546 Peptidase family M20/M25/M40 AFLV_RS06365 PF07687 Peptidase dimerisation domain AFLV_RS06375 PF00141 Peroxidase AFLV_RS06380 PF02673 Bacitracin resistance protein BacA AFLV_RS06385 PF12464 Maltose acetyltransferase AFLV_RS06385 PF14602 Hexapeptide repeat of succinyl-transferase AFLV_RS06390 PF13186 Iron-sulfur cluster-binding domain AFLV_RS06390 PF04055 Radical SAM superfamily AFLV_RS06400 PF03323 Bacillus/Clostridium GerA spore germination protein AFLV_RS06405 PF05504 Spore germination B3/ GerAC like, C-terminal AFLV_RS06410 PF03845 Spore germination protein AFLV_RS06415 PF00248 Aldo/keto reductase family AFLV_RS06420 PF01522 Polysaccharide deacetylase AFLV_RS06435 PF00251 Glycosyl hydrolases family 32 N-terminal domain AFLV_RS06435 PF08244 Glycosyl hydrolases family 32 C terminal AFLV_RS06485 PF02583 Metal-sensitive transcriptional repressor AFLV_RS06490 PF00403 Heavy-metal-associated domain AFLV_RS06495 PF00403 Heavy-metal-associated domain AFLV_RS06520 PF00403 Heavy-metal-associated domain AFLV_RS06525 PF00005 ABC transporter AFLV_RS06525 PF09383 NIL domain AFLV_RS06535 PF00005 ABC transporter AFLV_RS06535 PF13732 Domain of unknown function (DUF4162) AFLV_RS06550 PF13537 Glutamine amidotransferase domain AFLV_RS06550 PF00733 Asparagine synthase AFLV_RS06565 PF03441 FAD binding domain of DNA photolyase AFLV_RS06565 PF00875 DNA photolyase AFLV_RS06570 PF00171 Aldehyde dehydrogenase family AFLV_RS06585 PF04138 GtrA-like protein AFLV_RS06590 PF00672 HAMP domain AFLV_RS06590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS06595 PF03466 LysR substrate binding domain AFLV_RS06595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFLV_RS06600 PF01493 GXGXG motif AFLV_RS06600 PF01645 Conserved region in glutamate synthase AFLV_RS06600 PF04898 Glutamate synthase central domain AFLV_RS06600 PF00310 Glutamine amidotransferases class-II AFLV_RS06605 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFLV_RS06605 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS06615 PF00920 Dehydratase family AFLV_RS06625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFLV_RS06625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFLV_RS06625 PF02770 Acyl-CoA dehydrogenase, middle domain AFLV_RS06630 PF02515 CoA-transferase family III AFLV_RS06635 PF00202 Aminotransferase class-III AFLV_RS06640 PF00171 Aldehyde dehydrogenase family AFLV_RS06645 PF13520 Amino acid permease AFLV_RS06650 PF00205 Thiamine pyrophosphate enzyme, central domain AFLV_RS06650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFLV_RS06650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFLV_RS06655 PF00171 Aldehyde dehydrogenase family AFLV_RS06660 PF16653 Saccharopine dehydrogenase C-terminal domain AFLV_RS06660 PF03435 Saccharopine dehydrogenase NADP binding domain AFLV_RS06665 PF01012 Electron transfer flavoprotein domain AFLV_RS06670 PF00766 Electron transfer flavoprotein FAD-binding domain AFLV_RS06670 PF01012 Electron transfer flavoprotein domain AFLV_RS06715 PF12697 Alpha/beta hydrolase family AFLV_RS06750 PF13358 DDE superfamily endonuclease AFLV_RS06755 PF07690 Major Facilitator Superfamily AFLV_RS06760 PF01609 Transposase DDE domain AFLV_RS06770 PF01367 5'-3' exonuclease, C-terminal SAM fold AFLV_RS06770 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFLV_RS06780 PF01497 Periplasmic binding protein AFLV_RS06785 PF01032 FecCD transport family AFLV_RS06790 PF01032 FecCD transport family AFLV_RS06795 PF00005 ABC transporter AFLV_RS06805 PF00171 Aldehyde dehydrogenase family AFLV_RS06810 PF01472 PUA domain AFLV_RS06810 PF00696 Amino acid kinase family AFLV_RS06820 PF13732 Domain of unknown function (DUF4162) AFLV_RS06820 PF00005 ABC transporter AFLV_RS06840 PF00501 AMP-binding enzyme AFLV_RS06840 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS06845 PF00376 MerR family regulatory protein AFLV_RS06845 PF09278 MerR, DNA binding AFLV_RS06850 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS06850 PF00501 AMP-binding enzyme AFLV_RS06855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFLV_RS06855 PF02770 Acyl-CoA dehydrogenase, middle domain AFLV_RS06855 PF18158 Adaptive response protein AidB N-terminal domain AFLV_RS06860 PF03006 Haemolysin-III related AFLV_RS06880 PF07670 Nucleoside recognition AFLV_RS06890 PF13520 Amino acid permease AFLV_RS06895 PF01297 Zinc-uptake complex component A periplasmic AFLV_RS06900 PF00005 ABC transporter AFLV_RS06910 PF00950 ABC 3 transport family AFLV_RS06915 PF07690 Major Facilitator Superfamily AFLV_RS06930 PF05816 Toxic anion resistance protein (TelA) AFLV_RS06940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFLV_RS06940 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS06950 PF07690 Major Facilitator Superfamily AFLV_RS06955 PF02386 Cation transport protein AFLV_RS06960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS06960 PF00672 HAMP domain AFLV_RS06960 PF17202 Single cache domain 3 AFLV_RS06975 PF00672 HAMP domain AFLV_RS06975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS06975 PF02743 Cache domain AFLV_RS06975 PF06580 Histidine kinase AFLV_RS06980 PF04397 LytTr DNA-binding domain AFLV_RS06980 PF00072 Response regulator receiver domain AFLV_RS06985 PF13407 Periplasmic binding protein domain AFLV_RS06990 PF00005 ABC transporter AFLV_RS06995 PF02653 Branched-chain amino acid transport system / permease component AFLV_RS07000 PF13378 Enolase C-terminal domain-like AFLV_RS07000 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFLV_RS07010 PF07293 Protein of unknown function (DUF1450) AFLV_RS07035 PF00583 Acetyltransferase (GNAT) family AFLV_RS07040 PF00583 Acetyltransferase (GNAT) family AFLV_RS07040 PF00795 Carbon-nitrogen hydrolase AFLV_RS07045 PF00255 Glutathione peroxidase AFLV_RS07050 PF01636 Phosphotransferase enzyme family AFLV_RS07055 PF00534 Glycosyl transferases group 1 AFLV_RS07055 PF13439 Glycosyltransferase Family 4 AFLV_RS07065 PF00005 ABC transporter AFLV_RS07065 PF00664 ABC transporter transmembrane region AFLV_RS07070 PF00664 ABC transporter transmembrane region AFLV_RS07070 PF00005 ABC transporter AFLV_RS07075 PF12706 Beta-lactamase superfamily domain AFLV_RS07090 PF00909 Ammonium Transporter Family AFLV_RS07100 PF04851 Type III restriction enzyme, res subunit AFLV_RS07100 PF13307 Helicase C-terminal domain AFLV_RS07100 PF00929 Exonuclease AFLV_RS07105 PF01022 Bacterial regulatory protein, arsR family AFLV_RS07110 PF00403 Heavy-metal-associated domain AFLV_RS07115 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS07115 PF03707 Bacterial signalling protein N terminal repeat AFLV_RS07115 PF00563 EAL domain AFLV_RS07135 PF00005 ABC transporter AFLV_RS07140 PF00300 Histidine phosphatase superfamily (branch 1) AFLV_RS07145 PF05901 Excalibur calcium-binding domain AFLV_RS07145 PF00565 Staphylococcal nuclease homologue AFLV_RS07150 PF03063 Prismane/CO dehydrogenase family AFLV_RS07155 PF02110 Hydroxyethylthiazole kinase family AFLV_RS07160 PF02581 Thiamine monophosphate synthase AFLV_RS07165 PF00378 Enoyl-CoA hydratase/isomerase AFLV_RS07170 PF13426 PAS domain AFLV_RS07170 PF07228 Stage II sporulation protein E (SpoIIE) AFLV_RS07190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS07195 PF11122 Inner spore coat protein D AFLV_RS07200 PF05103 DivIVA protein AFLV_RS07205 PF00563 EAL domain AFLV_RS07205 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS07205 PF03707 Bacterial signalling protein N terminal repeat AFLV_RS07210 PF01170 Putative RNA methylase family UPF0020 AFLV_RS07210 PF02926 THUMP domain AFLV_RS07215 PF13307 Helicase C-terminal domain AFLV_RS07220 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AFLV_RS07225 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFLV_RS07230 PF09125 Cytochrome C oxidase subunit II, transmembrane AFLV_RS07230 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFLV_RS07260 PF00195 Chalcone and stilbene synthases, N-terminal domain AFLV_RS07260 PF02797 Chalcone and stilbene synthases, C-terminal domain AFLV_RS07265 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AFLV_RS07270 PF00350 Dynamin family AFLV_RS07275 PF10752 Protein of unknown function (DUF2533) AFLV_RS07280 PF00578 AhpC/TSA family AFLV_RS07285 PF08177 Small acid-soluble spore protein N family AFLV_RS07295 PF03061 Thioesterase superfamily AFLV_RS07300 PF01521 Iron-sulphur cluster biosynthesis AFLV_RS07315 PF01494 FAD binding domain AFLV_RS07320 PF06968 Biotin and Thiamin Synthesis associated domain AFLV_RS07320 PF04055 Radical SAM superfamily AFLV_RS07330 PF07070 SpoOM protein AFLV_RS07335 PF14191 YodL-like AFLV_RS07345 PF01048 Phosphorylase superfamily AFLV_RS07350 PF02557 D-alanyl-D-alanine carboxypeptidase AFLV_RS07360 PF13726 Na+-H+ antiporter family AFLV_RS07360 PF03553 Na+/H+ antiporter family AFLV_RS07365 PF01545 Cation efflux family AFLV_RS07365 PF16916 Dimerisation domain of Zinc Transporter AFLV_RS07370 PF00892 EamA-like transporter family AFLV_RS07375 PF01554 MatE AFLV_RS07380 PF01235 Sodium:alanine symporter family AFLV_RS07385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS07385 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS07385 PF00989 PAS fold AFLV_RS07390 PF10842 Protein of unknown function (DUF2642) AFLV_RS07395 PF05067 Manganese containing catalase AFLV_RS07400 PF00291 Pyridoxal-phosphate dependent enzyme AFLV_RS07400 PF13291 ACT domain AFLV_RS07420 PF00392 Bacterial regulatory proteins, gntR family AFLV_RS07425 PF00005 ABC transporter AFLV_RS07435 PF01136 Peptidase family U32 AFLV_RS07435 PF12392 Collagenase AFLV_RS07445 PF00313 'Cold-shock' DNA-binding domain AFLV_RS07450 PF03951 Glutamine synthetase, beta-Grasp domain AFLV_RS07450 PF00120 Glutamine synthetase, catalytic domain AFLV_RS07455 PF13472 GDSL-like Lipase/Acylhydrolase family AFLV_RS07460 PF00005 ABC transporter AFLV_RS07465 PF12679 ABC-2 family transporter protein AFLV_RS07470 PF00293 NUDIX domain AFLV_RS07485 PF01693 Caulimovirus viroplasmin AFLV_RS07490 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFLV_RS07490 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFLV_RS07495 PF01022 Bacterial regulatory protein, arsR family AFLV_RS07500 PF02040 Arsenical pump membrane protein AFLV_RS07505 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFLV_RS07510 PF03466 LysR substrate binding domain AFLV_RS07510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFLV_RS07515 PF00892 EamA-like transporter family AFLV_RS07525 PF00106 short chain dehydrogenase AFLV_RS07530 PF00005 ABC transporter AFLV_RS07550 PF13411 MerR HTH family regulatory protein AFLV_RS07555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFLV_RS07555 PF00403 Heavy-metal-associated domain AFLV_RS07555 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS07560 PF01751 Toprim domain AFLV_RS07560 PF01131 DNA topoisomerase AFLV_RS07565 PF13358 DDE superfamily endonuclease AFLV_RS07575 PF01751 Toprim domain AFLV_RS07575 PF01131 DNA topoisomerase AFLV_RS07585 PF01235 Sodium:alanine symporter family AFLV_RS07590 PF00092 von Willebrand factor type A domain AFLV_RS07595 PF07728 AAA domain (dynein-related subfamily) AFLV_RS07600 PF02583 Metal-sensitive transcriptional repressor AFLV_RS07605 PF02334 Replication terminator protein AFLV_RS07610 PF00551 Formyl transferase AFLV_RS07610 PF01842 ACT domain AFLV_RS07615 PF01226 Formate/nitrite transporter AFLV_RS07620 PF17284 Spermidine synthase tetramerisation domain AFLV_RS07625 PF00471 Ribosomal protein L33 AFLV_RS07630 PF07702 UTRA domain AFLV_RS07630 PF00392 Bacterial regulatory proteins, gntR family AFLV_RS07635 PF00128 Alpha amylase, catalytic domain AFLV_RS07635 PF16657 Maltogenic Amylase, C-terminal domain AFLV_RS07640 PF02378 Phosphotransferase system, EIIC AFLV_RS07640 PF00367 phosphotransferase system, EIIB AFLV_RS07650 PF03989 DNA gyrase C-terminal domain, beta-propeller AFLV_RS07650 PF00521 DNA gyrase/topoisomerase IV, subunit A AFLV_RS07655 PF01751 Toprim domain AFLV_RS07655 PF00204 DNA gyrase B AFLV_RS07655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS07655 PF00986 DNA gyrase B subunit, carboxyl terminus AFLV_RS07660 PF13380 CoA binding domain AFLV_RS07665 PF02660 Glycerol-3-phosphate acyltransferase AFLV_RS07670 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AFLV_RS07670 PF01189 16S rRNA methyltransferase RsmB/F AFLV_RS07670 PF17126 RsmF rRNA methyltransferase first C-terminal domain AFLV_RS07680 PF13472 GDSL-like Lipase/Acylhydrolase family AFLV_RS07685 PF02630 SCO1/SenC AFLV_RS07690 PF02645 Uncharacterised protein, DegV family COG1307 AFLV_RS07695 PF10751 Protein of unknown function (DUF2535) AFLV_RS07700 PF00585 C-terminal regulatory domain of Threonine dehydratase AFLV_RS07700 PF00291 Pyridoxal-phosphate dependent enzyme AFLV_RS07705 PF00186 Dihydrofolate reductase AFLV_RS07710 PF00303 Thymidylate synthase AFLV_RS07715 PF00902 Sec-independent protein translocase protein (TatC) AFLV_RS07720 PF02416 mttA/Hcf106 family AFLV_RS07730 PF00375 Sodium:dicarboxylate symporter family AFLV_RS07735 PF04445 Putative SAM-dependent methyltransferase AFLV_RS07740 PF06491 Disulphide isomerase AFLV_RS07745 PF04204 Homoserine O-succinyltransferase AFLV_RS07750 PF07690 Major Facilitator Superfamily AFLV_RS07760 PF01209 ubiE/COQ5 methyltransferase family AFLV_RS07765 PF03737 Aldolase/RraA AFLV_RS07770 PF04307 LexA-binding, inner membrane-associated putative hydrolase AFLV_RS07780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS07780 PF13426 PAS domain AFLV_RS07780 PF08447 PAS fold AFLV_RS07785 PF02602 Uroporphyrinogen-III synthase HemD AFLV_RS07790 PF13426 PAS domain AFLV_RS07790 PF13188 PAS domain AFLV_RS07790 PF00989 PAS fold AFLV_RS07790 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS07790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS07795 PF00258 Flavodoxin AFLV_RS07800 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFLV_RS07800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFLV_RS07805 PF00294 pfkB family carbohydrate kinase AFLV_RS07810 PF00455 DeoR C terminal sensor domain AFLV_RS07810 PF08220 DeoR-like helix-turn-helix domain AFLV_RS07815 PF01966 HD domain AFLV_RS07815 PF00072 Response regulator receiver domain AFLV_RS07820 PF17248 Family of unknown function (DUF5317) AFLV_RS07825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFLV_RS07825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFLV_RS07830 PF04309 Glycerol-3-phosphate responsive antiterminator AFLV_RS07835 PF01894 Uncharacterised protein family UPF0047 AFLV_RS07845 PF00313 'Cold-shock' DNA-binding domain AFLV_RS07860 PF02592 Putative vitamin uptake transporter AFLV_RS07870 PF02681 Divergent PAP2 family AFLV_RS07880 PF00330 Aconitase family (aconitate hydratase) AFLV_RS07880 PF00694 Aconitase C-terminal domain AFLV_RS07900 PF08179 Small acid-soluble spore protein P family AFLV_RS07905 PF11084 Protein of unknown function (DUF2621) AFLV_RS07910 PF07301 Protein of unknown function (DUF1453) AFLV_RS07915 PF00072 Response regulator receiver domain AFLV_RS07920 PF02683 Cytochrome C biogenesis protein transmembrane region AFLV_RS07925 PF03672 Uncharacterised protein family (UPF0154) AFLV_RS07930 PF00456 Transketolase, thiamine diphosphate binding domain AFLV_RS07930 PF02780 Transketolase, C-terminal domain AFLV_RS07930 PF02779 Transketolase, pyrimidine binding domain AFLV_RS07935 PF05979 Bacterial protein of unknown function (DUF896) AFLV_RS07940 PF00239 Resolvase, N terminal domain AFLV_RS07945 PF01476 LysM domain AFLV_RS07950 PF01726 LexA DNA binding domain AFLV_RS07950 PF00717 Peptidase S24-like AFLV_RS07955 PF03951 Glutamine synthetase, beta-Grasp domain AFLV_RS07955 PF00120 Glutamine synthetase, catalytic domain AFLV_RS07960 PF13411 MerR HTH family regulatory protein AFLV_RS07965 PF06838 Methionine gamma-lyase AFLV_RS07970 PF01926 50S ribosome-binding GTPase AFLV_RS07970 PF13167 GTP-binding GTPase N-terminal AFLV_RS07970 PF16360 GTP-binding GTPase Middle Region AFLV_RS07975 PF03458 UPF0126 domain AFLV_RS07980 PF00108 Thiolase, N-terminal domain AFLV_RS07980 PF02803 Thiolase, C-terminal domain AFLV_RS07985 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFLV_RS07985 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFLV_RS07990 PF00501 AMP-binding enzyme AFLV_RS07990 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS07995 PF02515 CoA-transferase family III AFLV_RS08000 PF02770 Acyl-CoA dehydrogenase, middle domain AFLV_RS08000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFLV_RS08000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFLV_RS08005 PF00501 AMP-binding enzyme AFLV_RS08005 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS08010 PF17866 AAA lid domain AFLV_RS08010 PF00004 ATPase family associated with various cellular activities (AAA) AFLV_RS08015 PF17209 Hfq protein AFLV_RS08025 PF08676 MutL C terminal dimerisation domain AFLV_RS08025 PF01119 DNA mismatch repair protein, C-terminal domain AFLV_RS08030 PF05192 MutS domain III AFLV_RS08030 PF00488 MutS domain V AFLV_RS08030 PF05190 MutS family domain IV AFLV_RS08030 PF01624 MutS domain I AFLV_RS08030 PF05188 MutS domain II AFLV_RS08035 PF10628 Outer spore coat protein E (CotE) AFLV_RS08040 PF06133 Control of competence regulator ComK, YlbF/YmcA AFLV_RS08045 PF01938 TRAM domain AFLV_RS08045 PF04055 Radical SAM superfamily AFLV_RS08045 PF00919 Uncharacterized protein family UPF0004 AFLV_RS08050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFLV_RS08055 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFLV_RS08055 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AFLV_RS08055 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AFLV_RS08060 PF01244 Membrane dipeptidase (Peptidase family M19) AFLV_RS08065 PF04232 Stage V sporulation protein S (SpoVS) AFLV_RS08070 PF13277 YmdB-like protein AFLV_RS08075 PF00013 KH domain AFLV_RS08075 PF12072 Domain of unknown function (DUF3552) AFLV_RS08075 PF01966 HD domain AFLV_RS08080 PF00154 recA bacterial DNA recombination protein AFLV_RS08085 PF02464 Competence-damaged protein AFLV_RS08085 PF18146 Damage-inducible protein CinA KH domain AFLV_RS08085 PF00994 Probable molybdopterin binding domain AFLV_RS08090 PF01066 CDP-alcohol phosphatidyltransferase AFLV_RS08095 PF13464 Domain of unknown function (DUF4115) AFLV_RS08100 PF11868 Protein of unknown function (DUF3388) AFLV_RS08105 PF11588 Protein of unknown function (DUF3243) AFLV_RS08115 PF00675 Insulinase (Peptidase family M16) AFLV_RS08115 PF05193 Peptidase M16 inactive domain AFLV_RS08120 PF05193 Peptidase M16 inactive domain AFLV_RS08125 PF00291 Pyridoxal-phosphate dependent enzyme AFLV_RS08130 PF00581 Rhodanese-like domain AFLV_RS08135 PF01396 Topoisomerase DNA binding C4 zinc finger AFLV_RS08135 PF01131 DNA topoisomerase AFLV_RS08135 PF01751 Toprim domain AFLV_RS08135 PF13342 C-terminal repeat of topoisomerase AFLV_RS08140 PF02096 60Kd inner membrane protein AFLV_RS08150 PF13411 MerR HTH family regulatory protein AFLV_RS08160 PF10057 Uncharacterized conserved protein (DUF2294) AFLV_RS08175 PF01266 FAD dependent oxidoreductase AFLV_RS08185 PF13685 Iron-containing alcohol dehydrogenase AFLV_RS08200 PF01979 Amidohydrolase family AFLV_RS08205 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AFLV_RS08210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS08210 PF00989 PAS fold AFLV_RS08210 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS08225 PF01022 Bacterial regulatory protein, arsR family AFLV_RS08235 PF01232 Mannitol dehydrogenase Rossmann domain AFLV_RS08235 PF08125 Mannitol dehydrogenase C-terminal domain AFLV_RS08240 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFLV_RS08245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFLV_RS08245 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFLV_RS08245 PF08279 HTH domain AFLV_RS08245 PF05043 Mga helix-turn-helix domain AFLV_RS08245 PF00874 PRD domain AFLV_RS08255 PF02378 Phosphotransferase system, EIIC AFLV_RS08255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFLV_RS08260 PF00188 Cysteine-rich secretory protein family AFLV_RS08270 PF01614 Bacterial transcriptional regulator AFLV_RS08270 PF09339 IclR helix-turn-helix domain AFLV_RS08275 PF01274 Malate synthase AFLV_RS08280 PF00440 Bacterial regulatory proteins, tetR family AFLV_RS08280 PF13977 BetI-type transcriptional repressor, C-terminal AFLV_RS08290 PF00005 ABC transporter AFLV_RS08290 PF13732 Domain of unknown function (DUF4162) AFLV_RS08305 PF07486 Cell Wall Hydrolase AFLV_RS08310 PF04405 Domain of Unknown function (DUF542) AFLV_RS08310 PF01814 Hemerythrin HHE cation binding domain AFLV_RS08315 PF01047 MarR family AFLV_RS08320 PF07681 DoxX AFLV_RS08325 PF02678 Pirin AFLV_RS08325 PF17954 Quercetinase C-terminal cupin domain AFLV_RS08330 PF07690 Major Facilitator Superfamily AFLV_RS08335 PF01268 Formate--tetrahydrofolate ligase AFLV_RS08340 PF00248 Aldo/keto reductase family AFLV_RS08345 PF10086 YhfC intramembrane metalloprotease AFLV_RS08350 PF13630 SdpI/YhfL protein family AFLV_RS08350 PF07853 Protein of unknown function (DUF1648) AFLV_RS08355 PF01022 Bacterial regulatory protein, arsR family AFLV_RS08360 PF01906 Putative heavy-metal-binding AFLV_RS08365 PF00893 Small Multidrug Resistance protein AFLV_RS08370 PF03009 Glycerophosphoryl diester phosphodiesterase family AFLV_RS08375 PF13416 Bacterial extracellular solute-binding protein AFLV_RS08380 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS08385 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS08390 PF08402 TOBE domain AFLV_RS08390 PF00005 ABC transporter AFLV_RS08395 PF04309 Glycerol-3-phosphate responsive antiterminator AFLV_RS08400 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFLV_RS08400 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFLV_RS08405 PF00175 Oxidoreductase NAD-binding domain AFLV_RS08405 PF00667 FAD binding domain AFLV_RS08405 PF00258 Flavodoxin AFLV_RS08410 PF03466 LysR substrate binding domain AFLV_RS08410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFLV_RS08415 PF08141 Small acid-soluble spore protein H family AFLV_RS08430 PF03703 Bacterial PH domain AFLV_RS08435 PF03703 Bacterial PH domain AFLV_RS08440 PF00171 Aldehyde dehydrogenase family AFLV_RS08450 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFLV_RS08450 PF00753 Metallo-beta-lactamase superfamily AFLV_RS08455 PF05675 Protein of unknown function (DUF817) AFLV_RS08460 PF13443 Cro/C1-type HTH DNA-binding domain AFLV_RS08465 PF11188 Protein of unknown function (DUF2975) AFLV_RS08475 PF02661 Fic/DOC family AFLV_RS08490 PF08818 Domain of unknown function (DU1801) AFLV_RS08495 PF13614 AAA domain AFLV_RS08505 PF00578 AhpC/TSA family AFLV_RS08510 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AFLV_RS08530 PF01323 DSBA-like thioredoxin domain AFLV_RS08540 PF08712 Scaffold protein Nfu/NifU N terminal AFLV_RS08540 PF13769 Virulence factor AFLV_RS08550 PF00293 NUDIX domain AFLV_RS08550 PF09297 NADH pyrophosphatase zinc ribbon domain AFLV_RS08590 PF13276 HTH-like domain AFLV_RS08590 PF13333 Integrase core domain AFLV_RS08590 PF00665 Integrase core domain AFLV_RS08635 PF13358 DDE superfamily endonuclease AFLV_RS08660 PF13667 ThiC-associated domain AFLV_RS08660 PF01964 Radical SAM ThiC family AFLV_RS08665 PF06039 Malate:quinone oxidoreductase (Mqo) AFLV_RS08675 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS08695 PF01740 STAS domain AFLV_RS08695 PF00916 Sulfate permease family AFLV_RS08700 PF00582 Universal stress protein family AFLV_RS08705 PF09587 Bacterial capsule synthesis protein PGA_cap AFLV_RS08710 PF02447 GntP family permease AFLV_RS08715 PF00474 Sodium:solute symporter family AFLV_RS08720 PF01609 Transposase DDE domain AFLV_RS08745 PF00665 Integrase core domain AFLV_RS08745 PF09299 Mu transposase, C-terminal AFLV_RS08755 PF01619 Proline dehydrogenase AFLV_RS08760 PF00171 Aldehyde dehydrogenase family AFLV_RS08765 PF02653 Branched-chain amino acid transport system / permease component AFLV_RS08770 PF02653 Branched-chain amino acid transport system / permease component AFLV_RS08775 PF00005 ABC transporter AFLV_RS08780 PF02608 ABC transporter substrate-binding protein PnrA-like AFLV_RS08785 PF00392 Bacterial regulatory proteins, gntR family AFLV_RS08785 PF07702 UTRA domain AFLV_RS08790 PF09397 Ftsk gamma domain AFLV_RS08790 PF01580 FtsK/SpoIIIE family AFLV_RS08790 PF17854 FtsK alpha domain AFLV_RS08800 PF00574 Clp protease AFLV_RS08805 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFLV_RS08805 PF00753 Metallo-beta-lactamase superfamily AFLV_RS08805 PF17770 Ribonuclease J C-terminal domain AFLV_RS08810 PF00701 Dihydrodipicolinate synthetase family AFLV_RS08815 PF13840 ACT domain AFLV_RS08815 PF00696 Amino acid kinase family AFLV_RS08820 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFLV_RS08820 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFLV_RS08825 PF02441 Flavoprotein AFLV_RS08830 PF16924 Dipicolinate synthase subunit A N-terminal domain AFLV_RS08830 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFLV_RS08835 PF05239 PRC-barrel domain AFLV_RS08840 PF05193 Peptidase M16 inactive domain AFLV_RS08840 PF00675 Insulinase (Peptidase family M16) AFLV_RS08845 PF01522 Polysaccharide deacetylase AFLV_RS08850 PF00575 S1 RNA binding domain AFLV_RS08850 PF03725 3' exoribonuclease family, domain 2 AFLV_RS08850 PF01138 3' exoribonuclease family, domain 1 AFLV_RS08850 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFLV_RS08850 PF00013 KH domain AFLV_RS08855 PF00312 Ribosomal protein S15 AFLV_RS08860 PF06574 FAD synthetase AFLV_RS08860 PF01687 Riboflavin kinase AFLV_RS08865 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFLV_RS08865 PF16198 tRNA pseudouridylate synthase B C-terminal domain AFLV_RS08870 PF02033 Ribosome-binding factor A AFLV_RS08875 PF04456 Protein of unknown function (DUF503) AFLV_RS08880 PF04760 Translation initiation factor IF-2, N-terminal region AFLV_RS08880 PF00009 Elongation factor Tu GTP binding domain AFLV_RS08880 PF11987 Translation-initiation factor 2 AFLV_RS08885 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AFLV_RS08890 PF04296 Protein of unknown function (DUF448) AFLV_RS08895 PF00575 S1 RNA binding domain AFLV_RS08895 PF13184 NusA-like KH domain AFLV_RS08895 PF08529 NusA N-terminal domain AFLV_RS08900 PF02576 RimP N-terminal domain AFLV_RS08900 PF17384 RimP C-terminal SH3 domain AFLV_RS08905 PF00929 Exonuclease AFLV_RS08905 PF02811 PHP domain AFLV_RS08905 PF14579 Helix-hairpin-helix motif AFLV_RS08905 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFLV_RS08905 PF14480 DNA polymerase III polC-type N-terminus I AFLV_RS08905 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFLV_RS08905 PF11490 DNA polymerase III polC-type N-terminus II AFLV_RS08910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFLV_RS08910 PF04073 Aminoacyl-tRNA editing domain AFLV_RS08910 PF03129 Anticodon binding domain AFLV_RS08915 PF13180 PDZ domain AFLV_RS08915 PF02163 Peptidase family M50 AFLV_RS08920 PF13288 DXP reductoisomerase C-terminal domain AFLV_RS08920 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFLV_RS08920 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AFLV_RS08930 PF01255 Putative undecaprenyl diphosphate synthase AFLV_RS08935 PF01765 Ribosome recycling factor AFLV_RS08940 PF00696 Amino acid kinase family AFLV_RS08945 PF00889 Elongation factor TS AFLV_RS08950 PF00318 Ribosomal protein S2 AFLV_RS08965 PF04545 Sigma-70, region 4 AFLV_RS08965 PF04539 Sigma-70 region 3 AFLV_RS08965 PF04542 Sigma-70 region 2 AFLV_RS08975 PF03975 CheD chemotactic sensory transduction AFLV_RS08980 PF04509 CheC-like family AFLV_RS08985 PF01584 CheW-like domain AFLV_RS08990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS08990 PF02895 Signal transducing histidine kinase, homodimeric domain AFLV_RS08990 PF01584 CheW-like domain AFLV_RS08990 PF07194 P2 response regulator binding domain AFLV_RS08990 PF01627 Hpt domain AFLV_RS08995 PF01339 CheB methylesterase AFLV_RS08995 PF00072 Response regulator receiver domain AFLV_RS09000 PF10609 NUBPL iron-transfer P-loop NTPase AFLV_RS09005 PF00448 SRP54-type protein, GTPase domain AFLV_RS09010 PF00771 FHIPEP family AFLV_RS09015 PF01312 FlhB HrpN YscU SpaS Family AFLV_RS09020 PF01311 Bacterial export proteins, family 1 AFLV_RS09025 PF01313 Bacterial export proteins, family 3 AFLV_RS09030 PF00813 FliP family AFLV_RS09035 PF04347 Flagellar biosynthesis protein, FliO AFLV_RS09040 PF00072 Response regulator receiver domain AFLV_RS09045 PF04509 CheC-like family AFLV_RS09045 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFLV_RS09050 PF02154 Flagellar motor switch protein FliM AFLV_RS09050 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFLV_RS09055 PF03748 Flagellar basal body-associated protein FliL AFLV_RS09060 PF06289 Flagellar and Swarming motility proteins AFLV_RS09065 PF00460 Flagella basal body rod protein AFLV_RS09065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFLV_RS09075 PF03963 Flagellar hook capping protein - N-terminal region AFLV_RS09080 PF02120 Flagellar hook-length control protein FliK AFLV_RS09090 PF02050 Flagellar FliJ protein AFLV_RS09095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFLV_RS09095 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFLV_RS09095 PF18269 T3SS EscN ATPase C-terminal domain AFLV_RS09100 PF02108 Flagellar assembly protein FliH AFLV_RS09105 PF14842 FliG N-terminal domain AFLV_RS09105 PF14841 FliG middle domain AFLV_RS09105 PF01706 FliG C-terminal domain AFLV_RS09110 PF01514 Secretory protein of YscJ/FliF family AFLV_RS09110 PF08345 Flagellar M-ring protein C-terminal AFLV_RS09115 PF02049 Flagellar hook-basal body complex protein FliE AFLV_RS09120 PF00460 Flagella basal body rod protein AFLV_RS09120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFLV_RS09125 PF00460 Flagella basal body rod protein AFLV_RS09130 PF06018 CodY GAF-like domain AFLV_RS09130 PF08222 CodY helix-turn-helix domain AFLV_RS09135 PF07724 AAA domain (Cdc48 subfamily) AFLV_RS09135 PF10431 C-terminal, D2-small domain, of ClpB protein AFLV_RS09135 PF00004 ATPase family associated with various cellular activities (AAA) AFLV_RS09140 PF00227 Proteasome subunit AFLV_RS09145 PF02899 Phage integrase, N-terminal SAM-like domain AFLV_RS09145 PF00589 Phage integrase family AFLV_RS09150 PF01134 Glucose inhibited division protein A AFLV_RS09155 PF01751 Toprim domain AFLV_RS09155 PF01131 DNA topoisomerase AFLV_RS09155 PF01396 Topoisomerase DNA binding C4 zinc finger AFLV_RS09160 PF02481 DNA recombination-mediator protein A AFLV_RS09165 PF02629 CoA binding domain AFLV_RS09165 PF00549 CoA-ligase AFLV_RS09170 PF00549 CoA-ligase AFLV_RS09170 PF08442 ATP-grasp domain AFLV_RS09175 PF01312 FlhB HrpN YscU SpaS Family AFLV_RS09185 PF01351 Ribonuclease HII AFLV_RS09190 PF01926 50S ribosome-binding GTPase AFLV_RS09195 PF10502 Signal peptidase, peptidase S26 AFLV_RS09200 PF01245 Ribosomal protein L19 AFLV_RS09205 PF01746 tRNA (Guanine-1)-methyltransferase AFLV_RS09210 PF05239 PRC-barrel domain AFLV_RS09210 PF01782 RimM N-terminal domain AFLV_RS09215 PF11068 YlqD protein AFLV_RS09225 PF00886 Ribosomal protein S16 AFLV_RS09230 PF00448 SRP54-type protein, GTPase domain AFLV_RS09230 PF02978 Signal peptide binding domain AFLV_RS09230 PF02881 SRP54-type protein, helical bundle domain AFLV_RS09235 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AFLV_RS09240 PF02881 SRP54-type protein, helical bundle domain AFLV_RS09240 PF00448 SRP54-type protein, GTPase domain AFLV_RS09245 PF02463 RecF/RecN/SMC N terminal domain AFLV_RS09245 PF06470 SMC proteins Flexible Hinge Domain AFLV_RS09250 PF01385 Probable transposase AFLV_RS09250 PF12323 Helix-turn-helix domain AFLV_RS09250 PF07282 Putative transposase DNA-binding domain AFLV_RS09255 PF00035 Double-stranded RNA binding motif AFLV_RS09255 PF14622 Ribonuclease-III-like AFLV_RS09260 PF00550 Phosphopantetheine attachment site AFLV_RS09270 PF00698 Acyl transferase domain AFLV_RS09275 PF02504 Fatty acid synthesis protein AFLV_RS09280 PF08279 HTH domain AFLV_RS09280 PF01575 MaoC like domain AFLV_RS09285 PF00271 Helicase conserved C-terminal domain AFLV_RS09285 PF00270 DEAD/DEAH box helicase AFLV_RS09285 PF17191 RecG wedge domain AFLV_RS09290 PF03313 Serine dehydratase alpha chain AFLV_RS09295 PF01842 ACT domain AFLV_RS09295 PF03315 Serine dehydratase beta chain AFLV_RS09300 PF13684 Dihydroxyacetone kinase family AFLV_RS09300 PF02734 DAK2 domain AFLV_RS09305 PF03780 Asp23 family, cell envelope-related function AFLV_RS09310 PF00830 Ribosomal L28 family AFLV_RS09315 PF08183 Stage V sporulation protein family AFLV_RS09320 PF04263 Thiamin pyrophosphokinase, catalytic domain AFLV_RS09320 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain AFLV_RS09325 PF00834 Ribulose-phosphate 3 epimerase family AFLV_RS09330 PF03193 RsgA GTPase AFLV_RS09330 PF16745 RsgA N-terminal domain AFLV_RS09335 PF03793 PASTA domain AFLV_RS09335 PF00069 Protein kinase domain AFLV_RS09345 PF04055 Radical SAM superfamily AFLV_RS09350 PF01029 NusB family AFLV_RS09350 PF01189 16S rRNA methyltransferase RsmB/F AFLV_RS09355 PF00551 Formyl transferase AFLV_RS09355 PF02911 Formyl transferase, C-terminal domain AFLV_RS09360 PF01327 Polypeptide deformylase AFLV_RS09365 PF18074 Primosomal protein N C-terminal domain AFLV_RS09365 PF04851 Type III restriction enzyme, res subunit AFLV_RS09365 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AFLV_RS09365 PF17764 3′ DNA-binding domain (3′BD) AFLV_RS09365 PF00271 Helicase conserved C-terminal domain AFLV_RS09370 PF02441 Flavoprotein AFLV_RS09370 PF04127 DNA / pantothenate metabolism flavoprotein AFLV_RS09375 PF01192 RNA polymerase Rpb6 AFLV_RS09380 PF00625 Guanylate kinase AFLV_RS09385 PF08340 Domain of unknown function (DUF1732) AFLV_RS09385 PF03755 YicC-like family, N-terminal region AFLV_RS09390 PF00690 Cation transporter/ATPase, N-terminus AFLV_RS09390 PF00689 Cation transporting ATPase, C-terminus AFLV_RS09395 PF05670 NFACT protein RNA binding domain AFLV_RS09405 PF00156 Phosphoribosyl transferase domain AFLV_RS09410 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFLV_RS09415 PF01180 Dihydroorotate dehydrogenase AFLV_RS09420 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AFLV_RS09420 PF00175 Oxidoreductase NAD-binding domain AFLV_RS09425 PF02142 MGS-like domain AFLV_RS09425 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFLV_RS09425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFLV_RS09430 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFLV_RS09430 PF00117 Glutamine amidotransferase class-I AFLV_RS09435 PF01979 Amidohydrolase family AFLV_RS09440 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFLV_RS09440 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFLV_RS09445 PF00860 Permease family AFLV_RS09450 PF00156 Phosphoribosyl transferase domain AFLV_RS09455 PF01479 S4 domain AFLV_RS09455 PF00849 RNA pseudouridylate synthase AFLV_RS09460 PF01252 Signal peptidase (SPase) II AFLV_RS09470 PF00133 tRNA synthetases class I (I, L, M and V) AFLV_RS09470 PF08264 Anticodon-binding domain of tRNA AFLV_RS09470 PF06827 Zinc finger found in FPG and IleRS AFLV_RS09475 PF05103 DivIVA protein AFLV_RS09480 PF17774 Putative RNA-binding domain in YlmH AFLV_RS09480 PF01479 S4 domain AFLV_RS09485 PF02325 YGGT family AFLV_RS09490 PF04472 Cell division protein SepF AFLV_RS09495 PF01168 Alanine racemase, N-terminal domain AFLV_RS09500 PF02578 Multi-copper polyphenol oxidoreductase laccase AFLV_RS09505 PF05239 PRC-barrel domain AFLV_RS09510 PF04542 Sigma-70 region 2 AFLV_RS09510 PF04539 Sigma-70 region 3 AFLV_RS09510 PF04545 Sigma-70, region 4 AFLV_RS09515 PF04545 Sigma-70, region 4 AFLV_RS09515 PF04542 Sigma-70 region 2 AFLV_RS09520 PF03419 Sporulation factor SpoIIGA AFLV_RS09525 PF00091 Tubulin/FtsZ family, GTPase domain AFLV_RS09525 PF12327 FtsZ family, C-terminal domain AFLV_RS09530 PF02491 SHS2 domain inserted in FTSA AFLV_RS09535 PF06947 Protein of unknown function (DUF1290) AFLV_RS09540 PF05949 Bacterial protein of unknown function (DUF881) AFLV_RS09545 PF05949 Bacterial protein of unknown function (DUF881) AFLV_RS09550 PF08478 POTRA domain, FtsQ-type AFLV_RS09555 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFLV_RS09555 PF01565 FAD binding domain AFLV_RS09560 PF03033 Glycosyltransferase family 28 N-terminal domain AFLV_RS09560 PF04101 Glycosyltransferase family 28 C-terminal domain AFLV_RS09565 PF01098 Cell cycle protein AFLV_RS09570 PF02875 Mur ligase family, glutamate ligase domain AFLV_RS09570 PF08245 Mur ligase middle domain AFLV_RS09575 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFLV_RS09575 PF00953 Glycosyl transferase family 4 AFLV_RS09580 PF01225 Mur ligase family, catalytic domain AFLV_RS09580 PF08245 Mur ligase middle domain AFLV_RS09580 PF02875 Mur ligase family, glutamate ligase domain AFLV_RS09585 PF00905 Penicillin binding protein transpeptidase domain AFLV_RS09585 PF03717 Penicillin-binding Protein dimerisation domain AFLV_RS09585 PF03793 PASTA domain AFLV_RS09590 PF03717 Penicillin-binding Protein dimerisation domain AFLV_RS09590 PF00905 Penicillin binding protein transpeptidase domain AFLV_RS09590 PF03793 PASTA domain AFLV_RS09595 PF04977 Septum formation initiator AFLV_RS09600 PF01795 MraW methylase family AFLV_RS09605 PF10079 Bacillithiol biosynthesis BshC AFLV_RS09615 PF08546 Ketopantoate reductase PanE/ApbA C terminal AFLV_RS09615 PF02558 Ketopantoate reductase PanE/ApbA AFLV_RS09625 PF00378 Enoyl-CoA hydratase/isomerase AFLV_RS09630 PF01783 Ribosomal L32p protein family AFLV_RS09635 PF02620 Large ribosomal RNA subunit accumulation protein YceD AFLV_RS09640 PF05636 HIGH Nucleotidyl Transferase AFLV_RS09645 PF13180 PDZ domain AFLV_RS09645 PF05362 Lon protease (S16) C-terminal proteolytic domain AFLV_RS09650 PF01734 Patatin-like phospholipase AFLV_RS09655 PF07670 Nucleoside recognition AFLV_RS09660 PF01467 Cytidylyltransferase-like AFLV_RS09680 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AFLV_RS09685 PF06133 Control of competence regulator ComK, YlbF/YmcA AFLV_RS09695 PF14003 YlbE-like protein AFLV_RS09700 PF14071 Putative coat protein AFLV_RS09705 PF14504 CAP-associated N-terminal AFLV_RS09705 PF00188 Cysteine-rich secretory protein family AFLV_RS09710 PF00571 CBS domain AFLV_RS09715 PF08868 YugN-like family AFLV_RS09725 PF01594 AI-2E family transporter AFLV_RS09735 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AFLV_RS09740 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AFLV_RS09745 PF00510 Cytochrome c oxidase subunit III AFLV_RS09750 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFLV_RS09755 PF00034 Cytochrome c AFLV_RS09755 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AFLV_RS09755 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFLV_RS09760 PF01040 UbiA prenyltransferase family AFLV_RS09765 PF02628 Cytochrome oxidase assembly protein AFLV_RS09770 PF00364 Biotin-requiring enzyme AFLV_RS09770 PF02785 Biotin carboxylase C-terminal domain AFLV_RS09770 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFLV_RS09770 PF00682 HMGL-like AFLV_RS09770 PF00289 Biotin carboxylase, N-terminal domain AFLV_RS09770 PF02436 Conserved carboxylase domain AFLV_RS09775 PF01098 Cell cycle protein AFLV_RS09780 PF07408 Protein of unknown function (DUF1507) AFLV_RS09790 PF02562 PhoH-like protein AFLV_RS09790 PF13638 PIN domain AFLV_RS09795 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AFLV_RS09805 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) AFLV_RS09815 PF14036 YlaH-like protein AFLV_RS09820 PF14492 Elongation Factor G, domain II AFLV_RS09820 PF00679 Elongation factor G C-terminus AFLV_RS09820 PF03144 Elongation factor Tu domain 2 AFLV_RS09820 PF00009 Elongation factor Tu GTP binding domain AFLV_RS09830 PF00459 Inositol monophosphatase family AFLV_RS09840 PF05256 Uncharacterised protein family (UPF0223) AFLV_RS09845 PF03060 Nitronate monooxygenase AFLV_RS09850 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AFLV_RS09850 PF01276 Orn/Lys/Arg decarboxylase, major domain AFLV_RS09875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS09875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFLV_RS09880 PF02817 e3 binding domain AFLV_RS09880 PF00364 Biotin-requiring enzyme AFLV_RS09880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFLV_RS09885 PF02779 Transketolase, pyrimidine binding domain AFLV_RS09885 PF02780 Transketolase, C-terminal domain AFLV_RS09890 PF00676 Dehydrogenase E1 component AFLV_RS09895 PF01327 Polypeptide deformylase AFLV_RS09905 PF07288 Protein of unknown function (DUF1447) AFLV_RS09910 PF00753 Metallo-beta-lactamase superfamily AFLV_RS09910 PF17770 Ribonuclease J C-terminal domain AFLV_RS09910 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFLV_RS09920 PF02254 TrkA-N domain AFLV_RS09920 PF02080 TrkA-C domain AFLV_RS09925 PF00578 AhpC/TSA family AFLV_RS09930 PF01546 Peptidase family M20/M25/M40 AFLV_RS09930 PF07687 Peptidase dimerisation domain AFLV_RS09935 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AFLV_RS09935 PF00132 Bacterial transferase hexapeptide (six repeats) AFLV_RS09935 PF14602 Hexapeptide repeat of succinyl-transferase AFLV_RS09945 PF08796 Protein of unknown function (DUF1797) AFLV_RS09955 PF00563 EAL domain AFLV_RS09955 PF10388 EAL-domain associated signalling protein domain AFLV_RS09965 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFLV_RS09965 PF00149 Calcineurin-like phosphoesterase AFLV_RS09970 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFLV_RS09975 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFLV_RS09980 PF02503 Polyphosphate kinase middle domain AFLV_RS09980 PF13090 Polyphosphate kinase C-terminal domain 2 AFLV_RS09980 PF17941 Polyphosphate kinase C-terminal domain 1 AFLV_RS09980 PF13089 Polyphosphate kinase N-terminal domain AFLV_RS09985 PF02541 Ppx/GppA phosphatase family AFLV_RS09990 PF14177 YkyB-like protein AFLV_RS09995 PF03707 Bacterial signalling protein N terminal repeat AFLV_RS09995 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS09995 PF00563 EAL domain AFLV_RS10000 PF05504 Spore germination B3/ GerAC like, C-terminal AFLV_RS10005 PF03845 Spore germination protein AFLV_RS10010 PF03323 Bacillus/Clostridium GerA spore germination protein AFLV_RS10015 PF16736 Single Cache-like AFLV_RS10015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS10015 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS10015 PF00989 PAS fold AFLV_RS10020 PF00072 Response regulator receiver domain AFLV_RS10020 PF00486 Transcriptional regulatory protein, C terminal AFLV_RS10030 PF00535 Glycosyl transferase family 2 AFLV_RS10040 PF00072 Response regulator receiver domain AFLV_RS10040 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS10045 PF01584 CheW-like domain AFLV_RS10045 PF00072 Response regulator receiver domain AFLV_RS10060 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS10060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS10070 PF08858 IDEAL domain AFLV_RS10070 PF08864 UPF0302 domain AFLV_RS10075 PF00155 Aminotransferase class I and II AFLV_RS10080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFLV_RS10080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFLV_RS10090 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS10090 PF00072 Response regulator receiver domain AFLV_RS10095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS10100 PF02743 Cache domain AFLV_RS10100 PF00672 HAMP domain AFLV_RS10100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS10105 PF05524 PEP-utilising enzyme, N-terminal AFLV_RS10105 PF02896 PEP-utilising enzyme, TIM barrel domain AFLV_RS10105 PF00391 PEP-utilising enzyme, mobile domain AFLV_RS10110 PF00381 PTS HPr component phosphorylation site AFLV_RS10115 PF00367 phosphotransferase system, EIIB AFLV_RS10115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AFLV_RS10115 PF02378 Phosphotransferase system, EIIC AFLV_RS10120 PF00874 PRD domain AFLV_RS10120 PF03123 CAT RNA binding domain AFLV_RS10130 PF00877 NlpC/P60 family AFLV_RS10130 PF01476 LysM domain AFLV_RS10135 PF00561 alpha/beta hydrolase fold AFLV_RS10140 PF03334 Na+/H+ antiporter subunit AFLV_RS10145 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AFLV_RS10150 PF01899 Na+/H+ ion antiporter subunit AFLV_RS10155 PF00361 Proton-conducting membrane transporter AFLV_RS10160 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFLV_RS10165 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AFLV_RS10170 PF13244 Domain of unknown function (DUF4040) AFLV_RS10170 PF00361 Proton-conducting membrane transporter AFLV_RS10170 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFLV_RS10175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS10190 PF01638 HxlR-like helix-turn-helix AFLV_RS10195 PF00881 Nitroreductase family AFLV_RS10200 PF00989 PAS fold AFLV_RS10200 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS10200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS10205 PF14166 YueH-like protein AFLV_RS10220 PF13460 NAD(P)H-binding AFLV_RS10225 PF14489 QueF-like protein AFLV_RS10235 PF04055 Radical SAM superfamily AFLV_RS10240 PF01242 6-pyruvoyl tetrahydropterin synthase AFLV_RS10245 PF06508 Queuosine biosynthesis protein QueC AFLV_RS10250 PF01895 PhoU domain AFLV_RS10270 PF13115 YtkA-like AFLV_RS10280 PF00486 Transcriptional regulatory protein, C terminal AFLV_RS10280 PF00072 Response regulator receiver domain AFLV_RS10285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS10285 PF00989 PAS fold AFLV_RS10285 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS10285 PF18698 Histidine kinase sensor domain AFLV_RS10285 PF00672 HAMP domain AFLV_RS10290 PF08447 PAS fold AFLV_RS10290 PF13426 PAS domain AFLV_RS10290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS10295 PF00145 C-5 cytosine-specific DNA methylase AFLV_RS10300 PF09208 Restriction endonuclease MspI AFLV_RS10305 PF00004 ATPase family associated with various cellular activities (AAA) AFLV_RS10305 PF07724 AAA domain (Cdc48 subfamily) AFLV_RS10305 PF17871 AAA lid domain AFLV_RS10305 PF10431 C-terminal, D2-small domain, of ClpB protein AFLV_RS10310 PF00440 Bacterial regulatory proteins, tetR family AFLV_RS10320 PF00005 ABC transporter AFLV_RS10325 PF13520 Amino acid permease AFLV_RS10335 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AFLV_RS10340 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS10340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS10340 PF02743 Cache domain AFLV_RS10345 PF02535 ZIP Zinc transporter AFLV_RS10350 PF03079 ARD/ARD' family AFLV_RS10355 PF00596 Class II Aldolase and Adducin N-terminal domain AFLV_RS10365 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFLV_RS10365 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFLV_RS10370 PF00155 Aminotransferase class I and II AFLV_RS10375 PF00795 Carbon-nitrogen hydrolase AFLV_RS10380 PF01636 Phosphotransferase enzyme family AFLV_RS10385 PF01008 Initiation factor 2 subunit family AFLV_RS10390 PF13407 Periplasmic binding protein domain AFLV_RS10395 PF00005 ABC transporter AFLV_RS10400 PF02653 Branched-chain amino acid transport system / permease component AFLV_RS10405 PF12729 Four helix bundle sensory module for signal transduction AFLV_RS10405 PF00672 HAMP domain AFLV_RS10405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS10410 PF13188 PAS domain AFLV_RS10410 PF13426 PAS domain AFLV_RS10410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS10410 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS10410 PF00989 PAS fold AFLV_RS10415 PF02589 LUD domain AFLV_RS10420 PF11870 Domain of unknown function (DUF3390) AFLV_RS10420 PF13183 4Fe-4S dicluster domain AFLV_RS10420 PF02589 LUD domain AFLV_RS10425 PF02754 Cysteine-rich domain AFLV_RS10430 PF07729 FCD domain AFLV_RS10430 PF00392 Bacterial regulatory proteins, gntR family AFLV_RS10435 PF02652 L-lactate permease AFLV_RS10445 PF07282 Putative transposase DNA-binding domain AFLV_RS10445 PF12323 Helix-turn-helix domain AFLV_RS10445 PF01385 Probable transposase AFLV_RS10480 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS10485 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS10495 PF13419 Haloacid dehalogenase-like hydrolase AFLV_RS10500 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFLV_RS10500 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFLV_RS10500 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFLV_RS10505 PF00356 Bacterial regulatory proteins, lacI family AFLV_RS10510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS10510 PF00672 HAMP domain AFLV_RS10510 PF02743 Cache domain AFLV_RS10515 PF17853 GGDEF-like domain AFLV_RS10515 PF13556 PucR C-terminal helix-turn-helix domain AFLV_RS10515 PF05651 Putative sugar diacid recognition AFLV_RS10520 PF01565 FAD binding domain AFLV_RS10520 PF02913 FAD linked oxidases, C-terminal domain AFLV_RS10525 PF02754 Cysteine-rich domain AFLV_RS10525 PF13183 4Fe-4S dicluster domain AFLV_RS10535 PF00210 Ferritin-like domain AFLV_RS10540 PF03741 Integral membrane protein TerC family AFLV_RS10545 PF13520 Amino acid permease AFLV_RS10550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS10550 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS10555 PF07690 Major Facilitator Superfamily AFLV_RS10560 PF00535 Glycosyl transferase family 2 AFLV_RS10570 PF00398 Ribosomal RNA adenine dimethylase AFLV_RS10575 PF02525 Flavodoxin-like fold AFLV_RS10585 PF01168 Alanine racemase, N-terminal domain AFLV_RS10595 PF00390 Malic enzyme, N-terminal domain AFLV_RS10595 PF03949 Malic enzyme, NAD binding domain AFLV_RS10600 PF00206 Lyase AFLV_RS10600 PF10415 Fumarase C C-terminus AFLV_RS10605 PF00710 Asparaginase, N-terminal AFLV_RS10605 PF17763 Glutaminase/Asparaginase C-terminal domain AFLV_RS10610 PF01381 Helix-turn-helix AFLV_RS10615 PF00069 Protein kinase domain AFLV_RS10630 PF00892 EamA-like transporter family AFLV_RS10660 PF18766 SWI2/SNF2 ATPase AFLV_RS10660 PF11867 Domain of unknown function (DUF3387) AFLV_RS10660 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFLV_RS10665 PF01420 Type I restriction modification DNA specificity domain AFLV_RS10670 PF02384 N-6 DNA Methylase AFLV_RS10710 PF01966 HD domain AFLV_RS10715 PF01053 Cys/Met metabolism PLP-dependent enzyme AFLV_RS10720 PF01053 Cys/Met metabolism PLP-dependent enzyme AFLV_RS10725 PF07883 Cupin domain AFLV_RS10730 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFLV_RS10735 PF01741 Large-conductance mechanosensitive channel, MscL AFLV_RS10740 PF04608 Phosphatidylglycerophosphatase A AFLV_RS10745 PF00756 Putative esterase AFLV_RS10755 PF13673 Acetyltransferase (GNAT) domain AFLV_RS10760 PF04239 Protein of unknown function (DUF421) AFLV_RS10765 PF13361 UvrD-like helicase C-terminal domain AFLV_RS10765 PF00580 UvrD/REP helicase N-terminal domain AFLV_RS10770 PF14069 Stage VI sporulation protein F AFLV_RS10780 PF00085 Thioredoxin AFLV_RS10790 PF04239 Protein of unknown function (DUF421) AFLV_RS10800 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AFLV_RS10805 PF07451 Stage V sporulation protein AD (SpoVAD) AFLV_RS10810 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AFLV_RS10845 PF07098 Protein of unknown function (DUF1360) AFLV_RS10855 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFLV_RS10855 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFLV_RS10855 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFLV_RS10860 PF01370 NAD dependent epimerase/dehydratase family AFLV_RS10865 PF13439 Glycosyltransferase Family 4 AFLV_RS10865 PF00534 Glycosyl transferases group 1 AFLV_RS10875 PF05114 Protein of unknown function (DUF692) AFLV_RS10895 PF13276 HTH-like domain AFLV_RS10895 PF00665 Integrase core domain AFLV_RS10895 PF13333 Integrase core domain AFLV_RS10900 PF01610 Transposase AFLV_RS10900 PF13542 Helix-turn-helix domain of transposase family ISL3 AFLV_RS10900 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AFLV_RS10910 PF07690 Major Facilitator Superfamily AFLV_RS10920 PF03448 MgtE intracellular N domain AFLV_RS10920 PF01769 Divalent cation transporter AFLV_RS10920 PF00571 CBS domain AFLV_RS10925 PF01098 Cell cycle protein AFLV_RS10930 PF12671 Putative amidase domain AFLV_RS10940 PF00149 Calcineurin-like phosphoesterase AFLV_RS10945 PF00849 RNA pseudouridylate synthase AFLV_RS10950 PF01513 ATP-NAD kinase AFLV_RS10955 PF04607 Region found in RelA / SpoT proteins AFLV_RS10965 PF01928 CYTH domain AFLV_RS10970 PF01464 Transglycosylase SLT domain AFLV_RS10975 PF01152 Bacterial-like globin AFLV_RS10990 PF01432 Peptidase family M3 AFLV_RS10990 PF08439 Oligopeptidase F AFLV_RS11000 PF12323 Helix-turn-helix domain AFLV_RS11000 PF01385 Probable transposase AFLV_RS11000 PF07282 Putative transposase DNA-binding domain AFLV_RS11005 PF05389 Negative regulator of genetic competence (MecA) AFLV_RS11010 PF13396 Phospholipase_D-nuclease N-terminal AFLV_RS11010 PF13091 PLD-like domain AFLV_RS11015 PF03960 ArsC family AFLV_RS11025 PF00005 ABC transporter AFLV_RS11025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFLV_RS11030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFLV_RS11030 PF00005 ABC transporter AFLV_RS11035 PF12911 N-terminal TM domain of oligopeptide transport permease C AFLV_RS11035 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS11040 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS11045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFLV_RS11060 PF00579 tRNA synthetases class I (W and Y) AFLV_RS11065 PF12227 Protein of unknown function (DUF3603) AFLV_RS11075 PF10026 Predicted Zn-dependent protease (DUF2268) AFLV_RS11080 PF02801 Beta-ketoacyl synthase, C-terminal domain AFLV_RS11080 PF00109 Beta-ketoacyl synthase, N-terminal domain AFLV_RS11085 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFLV_RS11085 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFLV_RS11090 PF02608 ABC transporter substrate-binding protein PnrA-like AFLV_RS11105 PF00004 ATPase family associated with various cellular activities (AAA) AFLV_RS11105 PF07724 AAA domain (Cdc48 subfamily) AFLV_RS11105 PF17871 AAA lid domain AFLV_RS11105 PF02861 Clp amino terminal domain, pathogenicity island component AFLV_RS11105 PF10431 C-terminal, D2-small domain, of ClpB protein AFLV_RS11110 PF14168 YjzC-like protein AFLV_RS11115 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFLV_RS11115 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFLV_RS11120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFLV_RS11120 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFLV_RS11125 PF00117 Glutamine amidotransferase class-I AFLV_RS11125 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFLV_RS11130 PF00202 Aminotransferase class-III AFLV_RS11135 PF00696 Amino acid kinase family AFLV_RS11140 PF01960 ArgJ family AFLV_RS11145 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFLV_RS11145 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFLV_RS11150 PF00325 Bacterial regulatory proteins, crp family AFLV_RS11150 PF00027 Cyclic nucleotide-binding domain AFLV_RS11155 PF14256 YwiC-like protein AFLV_RS11160 PF00326 Prolyl oligopeptidase family AFLV_RS11170 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AFLV_RS11170 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AFLV_RS11175 PF02645 Uncharacterised protein, DegV family COG1307 AFLV_RS11180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS11180 PF00672 HAMP domain AFLV_RS11180 PF02743 Cache domain AFLV_RS11185 PF02608 ABC transporter substrate-binding protein PnrA-like AFLV_RS11190 PF04461 Protein of unknown function (DUF520) AFLV_RS11195 PF02219 Methylenetetrahydrofolate reductase AFLV_RS11195 PF02574 Homocysteine S-methyltransferase AFLV_RS11200 PF02574 Homocysteine S-methyltransferase AFLV_RS11200 PF00809 Pterin binding enzyme AFLV_RS11200 PF02965 Vitamin B12 dependent methionine synthase, activation domain AFLV_RS11200 PF02310 B12 binding domain AFLV_RS11200 PF02607 B12 binding domain AFLV_RS11205 PF12557 Cob(I)alamin adenosyltransferase N terminal AFLV_RS11205 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AFLV_RS11210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFLV_RS11215 PF02277 Phosphoribosyltransferase AFLV_RS11220 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFLV_RS11220 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFLV_RS11225 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFLV_RS11225 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFLV_RS11230 PF11760 Cobalamin synthesis G N-terminal AFLV_RS11230 PF01890 Cobalamin synthesis G C-terminus AFLV_RS11230 PF11761 Cobalamin biosynthesis central region AFLV_RS11235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFLV_RS11240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFLV_RS11245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFLV_RS11250 PF01888 CbiD AFLV_RS11255 PF02570 Precorrin-8X methylmutase AFLV_RS11260 PF02571 Precorrin-6x reductase CbiJ/CobK AFLV_RS11265 PF01903 CbiX AFLV_RS11270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFLV_RS11270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFLV_RS11275 PF00005 ABC transporter AFLV_RS11285 PF02553 Cobalt transport protein component CbiN AFLV_RS11290 PF01891 Cobalt uptake substrate-specific transmembrane region AFLV_RS11300 PF00356 Bacterial regulatory proteins, lacI family AFLV_RS11305 PF17137 Domain of unknown function (DUF5110) AFLV_RS11305 PF13802 Galactose mutarotase-like AFLV_RS11305 PF16338 Domain of unknown function (DUF4968) AFLV_RS11305 PF01055 Glycosyl hydrolases family 31 AFLV_RS11310 PF01373 Glycosyl hydrolase family 14 AFLV_RS11310 PF03423 Carbohydrate binding domain (family 25) AFLV_RS11310 PF00128 Alpha amylase, catalytic domain AFLV_RS11315 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS11320 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS11325 PF13416 Bacterial extracellular solute-binding protein AFLV_RS11330 PF00128 Alpha amylase, catalytic domain AFLV_RS11330 PF02903 Alpha amylase, N-terminal ig-like domain AFLV_RS11330 PF16657 Maltogenic Amylase, C-terminal domain AFLV_RS11335 PF12833 Helix-turn-helix domain AFLV_RS11335 PF02311 AraC-like ligand binding domain AFLV_RS11340 PF01554 MatE AFLV_RS11345 PF01593 Flavin containing amine oxidoreductase AFLV_RS11350 PF00535 Glycosyl transferase family 2 AFLV_RS11370 PF01593 Flavin containing amine oxidoreductase AFLV_RS11375 PF01593 Flavin containing amine oxidoreductase AFLV_RS11380 PF00733 Asparagine synthase AFLV_RS11380 PF13537 Glutamine amidotransferase domain AFLV_RS11390 PF03707 Bacterial signalling protein N terminal repeat AFLV_RS11390 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS11390 PF00563 EAL domain AFLV_RS11395 PF07457 Protein of unknown function (DUF1516) AFLV_RS11400 PF00202 Aminotransferase class-III AFLV_RS11405 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFLV_RS11410 PF09388 Spo0E like sporulation regulatory protein AFLV_RS11415 PF04235 Protein of unknown function (DUF418) AFLV_RS11435 PF01738 Dienelactone hydrolase family AFLV_RS11445 PF13358 DDE superfamily endonuclease AFLV_RS11465 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS11465 PF00501 AMP-binding enzyme AFLV_RS11475 PF10676 Spore germination protein gerPA/gerPF AFLV_RS11480 PF10803 Spore germination GerPB AFLV_RS11485 PF10737 Spore germination protein GerPC AFLV_RS11500 PF10676 Spore germination protein gerPA/gerPF AFLV_RS11510 PF13476 AAA domain AFLV_RS11515 PF12320 Type 5 capsule protein repressor C-terminal domain AFLV_RS11515 PF00149 Calcineurin-like phosphoesterase AFLV_RS11520 PF00580 UvrD/REP helicase N-terminal domain AFLV_RS11520 PF13361 UvrD-like helicase C-terminal domain AFLV_RS11520 PF12705 PD-(D/E)XK nuclease superfamily AFLV_RS11525 PF13361 UvrD-like helicase C-terminal domain AFLV_RS11525 PF12705 PD-(D/E)XK nuclease superfamily AFLV_RS11530 PF09335 SNARE associated Golgi protein AFLV_RS11550 PF02463 RecF/RecN/SMC N terminal domain AFLV_RS11555 PF13361 UvrD-like helicase C-terminal domain AFLV_RS11555 PF00580 UvrD/REP helicase N-terminal domain AFLV_RS11560 PF12950 TaqI-like C-terminal specificity domain AFLV_RS11560 PF02384 N-6 DNA Methylase AFLV_RS11565 PF01381 Helix-turn-helix AFLV_RS11575 PF00463 Isocitrate lyase family AFLV_RS11580 PF16491 CAAX prenyl protease N-terminal, five membrane helices AFLV_RS11580 PF01435 Peptidase family M48 AFLV_RS11585 PF02630 SCO1/SenC AFLV_RS11590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS11590 PF00672 HAMP domain AFLV_RS11600 PF01966 HD domain AFLV_RS11600 PF00072 Response regulator receiver domain AFLV_RS11605 PF00196 Bacterial regulatory proteins, luxR family AFLV_RS11605 PF17874 MalT-like TPR region AFLV_RS11610 PF08668 HDOD domain AFLV_RS11610 PF00563 EAL domain AFLV_RS11615 PF00990 Diguanylate cyclase, GGDEF domain AFLV_RS11615 PF03707 Bacterial signalling protein N terminal repeat AFLV_RS11615 PF00563 EAL domain AFLV_RS11620 PF09383 NIL domain AFLV_RS11620 PF00005 ABC transporter AFLV_RS11625 PF02653 Branched-chain amino acid transport system / permease component AFLV_RS11635 PF13193 AMP-binding enzyme C-terminal domain AFLV_RS11635 PF00501 AMP-binding enzyme AFLV_RS11660 PF05593 RHS Repeat AFLV_RS11710 PF01743 Poly A polymerase head domain AFLV_RS11710 PF00571 CBS domain AFLV_RS11715 PF00474 Sodium:solute symporter family AFLV_RS11735 PF12706 Beta-lactamase superfamily domain AFLV_RS11740 PF00128 Alpha amylase, catalytic domain AFLV_RS11745 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS11750 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS11750 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS11755 PF01547 Bacterial extracellular solute-binding protein AFLV_RS11760 PF00356 Bacterial regulatory proteins, lacI family AFLV_RS11770 PF00440 Bacterial regulatory proteins, tetR family AFLV_RS11770 PF17932 Tetracyclin repressor-like, C-terminal domain AFLV_RS11775 PF01593 Flavin containing amine oxidoreductase AFLV_RS11780 PF00762 Ferrochelatase AFLV_RS11785 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFLV_RS11790 PF03992 Antibiotic biosynthesis monooxygenase AFLV_RS11795 PF00581 Rhodanese-like domain AFLV_RS11800 PF01546 Peptidase family M20/M25/M40 AFLV_RS11800 PF07687 Peptidase dimerisation domain AFLV_RS11810 PF00005 ABC transporter AFLV_RS11815 PF01230 HIT domain AFLV_RS11820 PF05698 Bacterial trigger factor protein (TF) C-terminus AFLV_RS11825 PF09680 Family of unknown function AFLV_RS11840 PF01047 MarR family AFLV_RS11850 PF17099 Tryptophan transporter TrpP AFLV_RS11855 PF00266 Aminotransferase class-V AFLV_RS11860 PF14147 Sporulation protein YhaL AFLV_RS11865 PF14120 YhzD-like protein AFLV_RS11870 PF04055 Radical SAM superfamily AFLV_RS11880 PF06133 Control of competence regulator ComK, YlbF/YmcA AFLV_RS11885 PF04286 Protein of unknown function (DUF445) AFLV_RS11895 PF13556 PucR C-terminal helix-turn-helix domain AFLV_RS11900 PF03459 TOBE domain AFLV_RS11900 PF17912 MalK OB fold domain AFLV_RS11900 PF00005 ABC transporter AFLV_RS11910 PF00269 Small, acid-soluble spore proteins, alpha/beta type AFLV_RS11915 PF00005 ABC transporter AFLV_RS11920 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS11925 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFLV_RS11930 PF00571 CBS domain AFLV_RS11930 PF03471 Transporter associated domain AFLV_RS11930 PF01595 Cyclin M transmembrane N-terminal domain AFLV_RS11935 PF08543 Phosphomethylpyrimidine kinase AFLV_RS11940 PF00899 ThiF family AFLV_RS11945 PF05690 Thiazole biosynthesis protein ThiG AFLV_RS11950 PF02597 ThiS family AFLV_RS11950 PF05690 Thiazole biosynthesis protein ThiG AFLV_RS11955 PF01266 FAD dependent oxidoreductase AFLV_RS11960 PF02581 Thiamine monophosphate synthase AFLV_RS11965 PF02361 Cobalt transport protein AFLV_RS11970 PF00005 ABC transporter AFLV_RS11975 PF09819 ABC-type cobalt transport system, permease component AFLV_RS11980 PF03070 TENA/THI-4/PQQC family AFLV_RS11985 PF17785 PUA-like domain AFLV_RS11985 PF10672 S-adenosylmethionine-dependent methyltransferase AFLV_RS11995 PF16657 Maltogenic Amylase, C-terminal domain AFLV_RS11995 PF00128 Alpha amylase, catalytic domain AFLV_RS12000 PF07690 Major Facilitator Superfamily AFLV_RS12005 PF01047 MarR family AFLV_RS12010 PF04293 SpoVR like protein AFLV_RS12015 PF12221 Bacterial membrane protein N terminal AFLV_RS12015 PF01145 SPFH domain / Band 7 family AFLV_RS12020 PF01145 SPFH domain / Band 7 family AFLV_RS12025 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFLV_RS12025 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFLV_RS12030 PF14148 YhdB-like protein AFLV_RS12035 PF00106 short chain dehydrogenase AFLV_RS12040 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFLV_RS12040 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFLV_RS12040 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFLV_RS12040 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFLV_RS12045 PF00571 CBS domain AFLV_RS12050 PF02600 Disulfide bond formation protein DsbB AFLV_RS12055 PF00085 Thioredoxin AFLV_RS12065 PF00849 RNA pseudouridylate synthase AFLV_RS12065 PF01479 S4 domain AFLV_RS12075 PF01595 Cyclin M transmembrane N-terminal domain AFLV_RS12075 PF00571 CBS domain AFLV_RS12075 PF03471 Transporter associated domain AFLV_RS12080 PF04298 Putative neutral zinc metallopeptidase AFLV_RS12085 PF00753 Metallo-beta-lactamase superfamily AFLV_RS12085 PF00581 Rhodanese-like domain AFLV_RS12095 PF01925 Sulfite exporter TauE/SafE AFLV_RS12100 PF01206 Sulfurtransferase TusA AFLV_RS12105 PF13686 DsrE/DsrF/DrsH-like family AFLV_RS12110 PF01206 Sulfurtransferase TusA AFLV_RS12110 PF00581 Rhodanese-like domain AFLV_RS12115 PF00581 Rhodanese-like domain AFLV_RS12120 PF04285 Protein of unknown function (DUF444) AFLV_RS12125 PF06798 PrkA serine protein kinase C-terminal domain AFLV_RS12125 PF08298 PrkA AAA domain AFLV_RS12130 PF00588 SpoU rRNA Methylase family AFLV_RS12135 PF12671 Putative amidase domain AFLV_RS12140 PF08331 Domain of unknown function (DUF1730) AFLV_RS12155 PF00356 Bacterial regulatory proteins, lacI family AFLV_RS12160 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS12165 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS12170 PF13416 Bacterial extracellular solute-binding protein AFLV_RS12175 PF00232 Glycosyl hydrolase family 1 AFLV_RS12285 PF02308 MgtC family AFLV_RS12290 PF00072 Response regulator receiver domain AFLV_RS12295 PF01022 Bacterial regulatory protein, arsR family AFLV_RS12300 PF00571 CBS domain AFLV_RS12300 PF01595 Cyclin M transmembrane N-terminal domain AFLV_RS12300 PF03471 Transporter associated domain AFLV_RS12305 PF13411 MerR HTH family regulatory protein AFLV_RS12315 PF00872 Transposase, Mutator family AFLV_RS12335 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AFLV_RS12335 PF13542 Helix-turn-helix domain of transposase family ISL3 AFLV_RS12335 PF01610 Transposase AFLV_RS12340 PF00005 ABC transporter AFLV_RS12380 PF13358 DDE superfamily endonuclease AFLV_RS12395 PF13276 HTH-like domain AFLV_RS12395 PF00665 Integrase core domain AFLV_RS12395 PF13333 Integrase core domain AFLV_RS12420 PF08141 Small acid-soluble spore protein H family AFLV_RS12425 PF07885 Ion channel AFLV_RS12425 PF02254 TrkA-N domain AFLV_RS12430 PF08868 YugN-like family AFLV_RS12435 PF00342 Phosphoglucose isomerase AFLV_RS12440 PF00465 Iron-containing alcohol dehydrogenase AFLV_RS12445 PF04070 Domain of unknown function (DUF378) AFLV_RS12450 PF00575 S1 RNA binding domain AFLV_RS12460 PF00155 Aminotransferase class I and II AFLV_RS12465 PF01037 Lrp/AsnC ligand binding domain AFLV_RS12470 PF00080 Copper/zinc superoxide dismutase (SODC) AFLV_RS12485 PF03600 Citrate transporter AFLV_RS12495 PF02632 BioY family AFLV_RS12500 PF06725 3D domain AFLV_RS12505 PF14068 Putative membrane protein AFLV_RS12510 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS12515 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS12520 PF06305 Lipopolysaccharide assembly protein A domain AFLV_RS12525 PF01521 Iron-sulphur cluster biosynthesis AFLV_RS12530 PF01678 Diaminopimelate epimerase AFLV_RS12540 PF07293 Protein of unknown function (DUF1450) AFLV_RS12545 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS12550 PF07315 Protein of unknown function (DUF1462) AFLV_RS12555 PF01106 NifU-like domain AFLV_RS12560 PF08544 GHMP kinases C terminal AFLV_RS12560 PF00288 GHMP kinases N terminal domain AFLV_RS12565 PF00291 Pyridoxal-phosphate dependent enzyme AFLV_RS12570 PF03447 Homoserine dehydrogenase, NAD binding domain AFLV_RS12570 PF01842 ACT domain AFLV_RS12570 PF00742 Homoserine dehydrogenase AFLV_RS12575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFLV_RS12575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFLV_RS12585 PF04608 Phosphatidylglycerophosphatase A AFLV_RS12590 PF13344 Haloacid dehalogenase-like hydrolase AFLV_RS12600 PF01934 Protein of unknown function DUF86 AFLV_RS12615 PF06265 Protein of unknown function (DUF1027) AFLV_RS12620 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AFLV_RS12625 PF04055 Radical SAM superfamily AFLV_RS12625 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AFLV_RS12630 PF01551 Peptidase family M23 AFLV_RS12635 PF00209 Sodium:neurotransmitter symporter family AFLV_RS12640 PF09560 Sporulation protein YunB (Spo_YunB) AFLV_RS12645 PF08827 Domain of unknown function (DUF1805) AFLV_RS12650 PF02872 5'-nucleotidase, C-terminal domain AFLV_RS12655 PF01925 Sulfite exporter TauE/SafE AFLV_RS12660 PF01904 Protein of unknown function DUF72 AFLV_RS12675 PF13333 Integrase core domain AFLV_RS12675 PF00665 Integrase core domain AFLV_RS12675 PF13276 HTH-like domain AFLV_RS12695 PF00589 Phage integrase family AFLV_RS12695 PF02899 Phage integrase, N-terminal SAM-like domain AFLV_RS12700 PF14028 Lantibiotic biosynthesis dehydratase C-term AFLV_RS12700 PF04738 Lantibiotic dehydratase, N terminus AFLV_RS12725 PF07690 Major Facilitator Superfamily AFLV_RS12730 PF00579 tRNA synthetases class I (W and Y) AFLV_RS12735 PF00872 Transposase, Mutator family AFLV_RS12745 PF13333 Integrase core domain AFLV_RS12745 PF13276 HTH-like domain AFLV_RS12745 PF00665 Integrase core domain AFLV_RS12750 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AFLV_RS12760 PF09299 Mu transposase, C-terminal AFLV_RS12760 PF00665 Integrase core domain AFLV_RS12770 PF01695 IstB-like ATP binding protein AFLV_RS12785 PF01695 IstB-like ATP binding protein AFLV_RS12820 PF02899 Phage integrase, N-terminal SAM-like domain AFLV_RS12820 PF00589 Phage integrase family AFLV_RS12825 PF01458 Uncharacterized protein family (UPF0051) AFLV_RS12830 PF01592 NifU-like N terminal domain AFLV_RS12835 PF00266 Aminotransferase class-V AFLV_RS12840 PF01458 Uncharacterized protein family (UPF0051) AFLV_RS12845 PF00005 ABC transporter AFLV_RS12850 PF02627 Carboxymuconolactone decarboxylase family AFLV_RS12855 PF03180 NLPA lipoprotein AFLV_RS12860 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS12865 PF09383 NIL domain AFLV_RS12865 PF00005 ABC transporter AFLV_RS12885 PF01339 CheB methylesterase AFLV_RS12885 PF00072 Response regulator receiver domain AFLV_RS12890 PF01053 Cys/Met metabolism PLP-dependent enzyme AFLV_RS12900 PF00085 Thioredoxin AFLV_RS12905 PF01751 Toprim domain AFLV_RS12915 PF01597 Glycine cleavage H-protein AFLV_RS12920 PF03960 ArsC family AFLV_RS12925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFLV_RS12925 PF02770 Acyl-CoA dehydrogenase, middle domain AFLV_RS12925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFLV_RS12930 PF00108 Thiolase, N-terminal domain AFLV_RS12930 PF02803 Thiolase, C-terminal domain AFLV_RS12935 PF00378 Enoyl-CoA hydratase/isomerase AFLV_RS12935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFLV_RS12935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFLV_RS12945 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFLV_RS12945 PF00378 Enoyl-CoA hydratase/isomerase AFLV_RS12945 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFLV_RS12950 PF01619 Proline dehydrogenase AFLV_RS12960 PF07875 Coat F domain AFLV_RS12975 PF03992 Antibiotic biosynthesis monooxygenase AFLV_RS12985 PF10615 Protein of unknown function (DUF2470) AFLV_RS12985 PF01243 Pyridoxamine 5'-phosphate oxidase AFLV_RS12990 PF00005 ABC transporter AFLV_RS12995 PF01032 FecCD transport family AFLV_RS13000 PF01497 Periplasmic binding protein AFLV_RS13005 PF01668 SmpB protein AFLV_RS13010 PF00575 S1 RNA binding domain AFLV_RS13010 PF00773 RNB domain AFLV_RS13010 PF08206 Ribonuclease B OB domain AFLV_RS13010 PF17876 Cold shock domain AFLV_RS13015 PF12146 Serine aminopeptidase, S33 AFLV_RS13020 PF03840 Preprotein translocase SecG subunit AFLV_RS13035 PF05593 RHS Repeat AFLV_RS13055 PF05593 RHS Repeat AFLV_RS13080 PF05593 RHS Repeat AFLV_RS13095 PF03952 Enolase, N-terminal domain AFLV_RS13095 PF00113 Enolase, C-terminal TIM barrel domain AFLV_RS13100 PF01676 Metalloenzyme superfamily AFLV_RS13100 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AFLV_RS13105 PF00121 Triosephosphate isomerase AFLV_RS13110 PF00162 Phosphoglycerate kinase AFLV_RS13115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFLV_RS13115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFLV_RS13120 PF04198 Putative sugar-binding domain AFLV_RS13130 PF04963 Sigma-54 factor, core binding domain AFLV_RS13130 PF04552 Sigma-54, DNA binding domain AFLV_RS13130 PF00309 Sigma-54 factor, Activator interacting domain (AID) AFLV_RS13140 PF00574 Clp protease AFLV_RS13145 PF00381 PTS HPr component phosphorylation site AFLV_RS13150 PF10298 WhiA N-terminal LAGLIDADG-like domain AFLV_RS13150 PF14527 WhiA LAGLIDADG-like domain AFLV_RS13150 PF02650 WhiA C-terminal HTH domain AFLV_RS13155 PF01933 Uncharacterised protein family UPF0052 AFLV_RS13160 PF03668 P-loop ATPase protein family AFLV_RS13165 PF00293 NUDIX domain AFLV_RS13170 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS13180 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFLV_RS13180 PF01502 Phosphoribosyl-AMP cyclohydrolase AFLV_RS13185 PF00977 Histidine biosynthesis protein AFLV_RS13190 PF00977 Histidine biosynthesis protein AFLV_RS13195 PF00117 Glutamine amidotransferase class-I AFLV_RS13200 PF00475 Imidazoleglycerol-phosphate dehydratase AFLV_RS13205 PF00815 Histidinol dehydrogenase AFLV_RS13210 PF01634 ATP phosphoribosyltransferase AFLV_RS13215 PF13393 Histidyl-tRNA synthetase AFLV_RS13220 PF14602 Hexapeptide repeat of succinyl-transferase AFLV_RS13225 PF13419 Haloacid dehalogenase-like hydrolase AFLV_RS13230 PF07670 Nucleoside recognition AFLV_RS13235 PF01790 Prolipoprotein diacylglyceryl transferase AFLV_RS13240 PF07475 HPr Serine kinase C-terminal domain AFLV_RS13240 PF02603 HPr Serine kinase N terminus AFLV_RS13245 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AFLV_RS13265 PF17755 UvrA DNA-binding domain AFLV_RS13265 PF17760 UvrA interaction domain AFLV_RS13265 PF00005 ABC transporter AFLV_RS13270 PF12344 Ultra-violet resistance protein B AFLV_RS13270 PF02151 UvrB/uvrC motif AFLV_RS13270 PF04851 Type III restriction enzyme, res subunit AFLV_RS13270 PF00271 Helicase conserved C-terminal domain AFLV_RS13270 PF17757 UvrB interaction domain AFLV_RS13275 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) AFLV_RS13280 PF17820 PDZ domain AFLV_RS13285 PF13411 MerR HTH family regulatory protein AFLV_RS13290 PF01471 Putative peptidoglycan binding domain AFLV_RS13290 PF03572 Peptidase family S41 AFLV_RS13290 PF17820 PDZ domain AFLV_RS13315 PF04225 Opacity-associated protein A LysM-like domain AFLV_RS13315 PF01551 Peptidase family M23 AFLV_RS13320 PF02687 FtsX-like permease family AFLV_RS13320 PF18075 FtsX extracellular domain AFLV_RS13325 PF00005 ABC transporter AFLV_RS13330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFLV_RS13335 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AFLV_RS13335 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AFLV_RS13340 PF03462 PCRF domain AFLV_RS13340 PF00472 RF-1 domain AFLV_RS13345 PF07517 SecA DEAD-like domain AFLV_RS13345 PF02810 SEC-C motif AFLV_RS13345 PF07516 SecA Wing and Scaffold domain AFLV_RS13345 PF01043 SecA preprotein cross-linking domain AFLV_RS13355 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AFLV_RS13355 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFLV_RS13360 PF11871 Domain of unknown function (DUF3391) AFLV_RS13360 PF01966 HD domain AFLV_RS13375 PF02561 Flagellar protein FliS AFLV_RS13380 PF02465 Flagellar hook-associated protein 2 N-terminus AFLV_RS13380 PF07195 Flagellar hook-associated protein 2 C-terminus AFLV_RS13380 PF07196 Flagellin hook IN motif AFLV_RS13385 PF03646 FlaG protein AFLV_RS13390 PF13181 Tetratricopeptide repeat AFLV_RS13390 PF00535 Glycosyl transferase family 2 AFLV_RS13395 PF01467 Cytidylyltransferase-like AFLV_RS13410 PF13181 Tetratricopeptide repeat AFLV_RS13410 PF00535 Glycosyl transferase family 2 AFLV_RS13420 PF00669 Bacterial flagellin N-terminal helical region AFLV_RS13420 PF00700 Bacterial flagellin C-terminal helical region AFLV_RS13430 PF02599 Global regulator protein family AFLV_RS13435 PF02623 FliW protein AFLV_RS13445 PF00700 Bacterial flagellin C-terminal helical region AFLV_RS13445 PF00669 Bacterial flagellin N-terminal helical region AFLV_RS13450 PF00460 Flagella basal body rod protein AFLV_RS13450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFLV_RS13470 PF03885 Protein of unknown function (DUF327) AFLV_RS13475 PF00700 Bacterial flagellin C-terminal helical region AFLV_RS13475 PF00669 Bacterial flagellin N-terminal helical region AFLV_RS13485 PF01312 FlhB HrpN YscU SpaS Family AFLV_RS13500 PF00271 Helicase conserved C-terminal domain AFLV_RS13500 PF04851 Type III restriction enzyme, res subunit AFLV_RS13505 PF02645 Uncharacterised protein, DegV family COG1307 AFLV_RS13515 PF00072 Response regulator receiver domain AFLV_RS13515 PF00196 Bacterial regulatory proteins, luxR family AFLV_RS13520 PF05384 Sensor protein DegS AFLV_RS13520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS13520 PF07730 Histidine kinase AFLV_RS13525 PF01205 Uncharacterized protein family UPF0029 AFLV_RS13525 PF09186 Domain of unknown function (DUF1949) AFLV_RS13530 PF03816 Cell envelope-related transcriptional attenuator domain AFLV_RS13535 PF00953 Glycosyl transferase family 4 AFLV_RS13545 PF04122 Putative cell wall binding repeat 2 AFLV_RS13545 PF08486 Stage II sporulation protein AFLV_RS13550 PF00395 S-layer homology domain AFLV_RS13550 PF00963 Cohesin domain AFLV_RS13555 PF01520 N-acetylmuramoyl-L-alanine amidase AFLV_RS13555 PF00395 S-layer homology domain AFLV_RS13560 PF00082 Subtilase family AFLV_RS13565 PF00149 Calcineurin-like phosphoesterase AFLV_RS13565 PF02872 5'-nucleotidase, C-terminal domain AFLV_RS13570 PF07833 Copper amine oxidase N-terminal domain AFLV_RS13575 PF00395 S-layer homology domain AFLV_RS13575 PF00128 Alpha amylase, catalytic domain AFLV_RS13575 PF02903 Alpha amylase, N-terminal ig-like domain AFLV_RS13595 PF00005 ABC transporter AFLV_RS13595 PF00664 ABC transporter transmembrane region AFLV_RS13595 PF03412 Peptidase C39 family AFLV_RS13635 PF08447 PAS fold AFLV_RS13635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS13635 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS13635 PF00989 PAS fold AFLV_RS13640 PF00196 Bacterial regulatory proteins, luxR family AFLV_RS13640 PF00072 Response regulator receiver domain AFLV_RS13670 PF04002 RadC-like JAB domain AFLV_RS13690 PF13333 Integrase core domain AFLV_RS13690 PF00665 Integrase core domain AFLV_RS13690 PF13276 HTH-like domain AFLV_RS13705 PF00665 Integrase core domain AFLV_RS13705 PF02796 Helix-turn-helix domain of resolvase AFLV_RS13710 PF01695 IstB-like ATP binding protein AFLV_RS13720 PF00395 S-layer homology domain AFLV_RS13725 PF01476 LysM domain AFLV_RS13725 PF00877 NlpC/P60 family AFLV_RS13730 PF00395 S-layer homology domain AFLV_RS13730 PF00331 Glycosyl hydrolase family 10 AFLV_RS13730 PF02018 Carbohydrate binding domain AFLV_RS13730 PF06452 Carbohydrate family 9 binding domain-like AFLV_RS13735 PF00082 Subtilase family AFLV_RS13735 PF05922 Peptidase inhibitor I9 AFLV_RS13740 PF07516 SecA Wing and Scaffold domain AFLV_RS13740 PF01043 SecA preprotein cross-linking domain AFLV_RS13740 PF07517 SecA DEAD-like domain AFLV_RS13755 PF01381 Helix-turn-helix AFLV_RS13765 PF14183 YwpF-like protein AFLV_RS13770 PF04203 Sortase domain AFLV_RS13780 PF00696 Amino acid kinase family AFLV_RS13780 PF13840 ACT domain AFLV_RS13785 PF00696 Amino acid kinase family AFLV_RS13785 PF13840 ACT domain AFLV_RS13795 PF06338 ComK protein AFLV_RS13800 PF02743 Cache domain AFLV_RS13800 PF00672 HAMP domain AFLV_RS13800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS13815 PF14667 Polysaccharide biosynthesis C-terminal domain AFLV_RS13815 PF01943 Polysaccharide biosynthesis protein AFLV_RS13820 PF03808 Glycosyl transferase WecB/TagA/CpsF family AFLV_RS13830 PF05225 helix-turn-helix, Psq domain AFLV_RS13830 PF02810 SEC-C motif AFLV_RS13835 PF13509 S1 domain AFLV_RS13835 PF17783 CvfB-like winged helix domain AFLV_RS13840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFLV_RS13840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFLV_RS13855 PF02661 Fic/DOC family AFLV_RS13855 PF13784 Fic/DOC family N-terminal AFLV_RS13865 PF12419 SNF2 Helicase protein AFLV_RS13865 PF00271 Helicase conserved C-terminal domain AFLV_RS13865 PF00176 SNF2 family N-terminal domain AFLV_RS13870 PF00873 AcrB/AcrD/AcrF family AFLV_RS13875 PF16363 GDP-mannose 4,6 dehydratase AFLV_RS13880 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFLV_RS13880 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFLV_RS13880 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFLV_RS13890 PF13407 Periplasmic binding protein domain AFLV_RS13895 PF02653 Branched-chain amino acid transport system / permease component AFLV_RS13900 PF00005 ABC transporter AFLV_RS13905 PF05025 RbsD / FucU transport protein family AFLV_RS13910 PF00294 pfkB family carbohydrate kinase AFLV_RS13915 PF00356 Bacterial regulatory proteins, lacI family AFLV_RS13920 PF00483 Nucleotidyl transferase AFLV_RS13940 PF07977 FabA-like domain AFLV_RS13950 PF00460 Flagella basal body rod protein AFLV_RS13950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFLV_RS13955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFLV_RS13955 PF00460 Flagella basal body rod protein AFLV_RS13960 PF07282 Putative transposase DNA-binding domain AFLV_RS13960 PF01385 Probable transposase AFLV_RS13960 PF12323 Helix-turn-helix domain AFLV_RS13970 PF12116 Stage III sporulation protein D AFLV_RS13975 PF01551 Peptidase family M23 AFLV_RS13980 PF08486 Stage II sporulation protein AFLV_RS13985 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFLV_RS13995 PF06612 Protein of unknown function (DUF1146) AFLV_RS14000 PF00361 Proton-conducting membrane transporter AFLV_RS14005 PF00361 Proton-conducting membrane transporter AFLV_RS14010 PF00361 Proton-conducting membrane transporter AFLV_RS14010 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AFLV_RS14010 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFLV_RS14015 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFLV_RS14020 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFLV_RS14025 PF00037 4Fe-4S binding domain AFLV_RS14030 PF00146 NADH dehydrogenase AFLV_RS14035 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFLV_RS14040 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFLV_RS14045 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFLV_RS14050 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFLV_RS14055 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AFLV_RS14055 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFLV_RS14060 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFLV_RS14060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFLV_RS14065 PF00231 ATP synthase AFLV_RS14070 PF00306 ATP synthase alpha/beta chain, C terminal domain AFLV_RS14070 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFLV_RS14070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFLV_RS14075 PF00213 ATP synthase delta (OSCP) subunit AFLV_RS14080 PF00430 ATP synthase B/B' CF(0) AFLV_RS14085 PF00137 ATP synthase subunit C AFLV_RS14090 PF00119 ATP synthase A chain AFLV_RS14095 PF03899 ATP synthase I chain AFLV_RS14105 PF02350 UDP-N-acetylglucosamine 2-epimerase AFLV_RS14115 PF00464 Serine hydroxymethyltransferase AFLV_RS14120 PF04260 Protein of unknown function (DUF436) AFLV_RS14125 PF02502 Ribose/Galactose Isomerase AFLV_RS14130 PF02743 Cache domain AFLV_RS14130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFLV_RS14130 PF00672 HAMP domain AFLV_RS14135 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFLV_RS14140 PF02659 Putative manganese efflux pump AFLV_RS14145 PF01300 Telomere recombination AFLV_RS14145 PF03481 Putative GTP-binding controlling metal-binding AFLV_RS14150 PF09551 Stage II sporulation protein R (spore_II_R) AFLV_RS14155 PF17827 PrmC N-terminal domain AFLV_RS14155 PF13847 Methyltransferase domain AFLV_RS14160 PF03462 PCRF domain AFLV_RS14160 PF00472 RF-1 domain AFLV_RS14165 PF00265 Thymidine kinase AFLV_RS14170 PF01197 Ribosomal protein L31 AFLV_RS14175 PF07497 Rho termination factor, RNA-binding domain AFLV_RS14175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFLV_RS14175 PF07498 Rho termination factor, N-terminal domain AFLV_RS14180 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AFLV_RS14185 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFLV_RS14190 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFLV_RS14195 PF01116 Fructose-bisphosphate aldolase class-II AFLV_RS14200 PF00072 Response regulator receiver domain AFLV_RS14205 PF10740 Domain of unknown function (DUF2529) AFLV_RS14210 PF00117 Glutamine amidotransferase class-I AFLV_RS14210 PF06418 CTP synthase N-terminus AFLV_RS14215 PF05066 HB1, ASXL, restriction endonuclease HTH domain AFLV_RS14220 PF02310 B12 binding domain AFLV_RS14220 PF01642 Methylmalonyl-CoA mutase AFLV_RS14230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFLV_RS14230 PF02770 Acyl-CoA dehydrogenase, middle domain AFLV_RS14230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFLV_RS14235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFLV_RS14235 PF02770 Acyl-CoA dehydrogenase, middle domain AFLV_RS14235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFLV_RS14240 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFLV_RS14240 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFLV_RS14245 PF00108 Thiolase, N-terminal domain AFLV_RS14245 PF02803 Thiolase, C-terminal domain AFLV_RS14250 PF13183 4Fe-4S dicluster domain AFLV_RS14250 PF02754 Cysteine-rich domain AFLV_RS14255 PF13091 PLD-like domain AFLV_RS14260 PF00750 tRNA synthetases class I (R) AFLV_RS14260 PF05746 DALR anticodon binding domain AFLV_RS14260 PF03485 Arginyl tRNA synthetase N terminal domain AFLV_RS14295 PF00491 Arginase family AFLV_RS14300 PF17284 Spermidine synthase tetramerisation domain AFLV_RS14305 PF00912 Transglycosylase AFLV_RS14305 PF00905 Penicillin binding protein transpeptidase domain AFLV_RS14310 PF08741 YwhD family AFLV_RS14315 PF02163 Peptidase family M50 AFLV_RS14320 PF01361 Tautomerase enzyme AFLV_RS14330 PF01966 HD domain AFLV_RS14335 PF07293 Protein of unknown function (DUF1450) AFLV_RS14345 PF03099 Biotin/lipoate A/B protein ligase family AFLV_RS14350 PF01515 Phosphate acetyl/butaryl transferase AFLV_RS14355 PF09335 SNARE associated Golgi protein AFLV_RS14360 PF06778 Chlorite dismutase AFLV_RS14365 PF07486 Cell Wall Hydrolase AFLV_RS14370 PF09671 Spore coat protein (Spore_GerQ) AFLV_RS14375 PF04241 Protein of unknown function (DUF423) AFLV_RS14380 PF17261 Family of unknown function (DUF5327) AFLV_RS14385 PF00128 Alpha amylase, catalytic domain AFLV_RS14390 PF00999 Sodium/hydrogen exchanger family AFLV_RS14390 PF02254 TrkA-N domain AFLV_RS14400 PF03167 Uracil DNA glycosylase superfamily AFLV_RS14405 PF03129 Anticodon binding domain AFLV_RS14405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFLV_RS14410 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFLV_RS14410 PF13192 Thioredoxin domain AFLV_RS14415 PF00578 AhpC/TSA family AFLV_RS14415 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFLV_RS14425 PF00535 Glycosyl transferase family 2 AFLV_RS14430 PF07690 Major Facilitator Superfamily AFLV_RS14435 PF01385 Probable transposase AFLV_RS14435 PF12323 Helix-turn-helix domain AFLV_RS14435 PF07282 Putative transposase DNA-binding domain AFLV_RS14440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFLV_RS14450 PF01791 DeoC/LacD family aldolase AFLV_RS14455 PF07662 Na+ dependent nucleoside transporter C-terminus AFLV_RS14455 PF01773 Na+ dependent nucleoside transporter N-terminus AFLV_RS14460 PF04198 Putative sugar-binding domain AFLV_RS14465 PF00251 Glycosyl hydrolases family 32 N-terminal domain AFLV_RS14465 PF08244 Glycosyl hydrolases family 32 C terminal AFLV_RS14470 PF00294 pfkB family carbohydrate kinase AFLV_RS14475 PF02378 Phosphotransferase system, EIIC AFLV_RS14475 PF00367 phosphotransferase system, EIIB AFLV_RS14480 PF00874 PRD domain AFLV_RS14480 PF03123 CAT RNA binding domain AFLV_RS14485 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AFLV_RS14490 PF06018 CodY GAF-like domain AFLV_RS14490 PF17853 GGDEF-like domain AFLV_RS14490 PF13556 PucR C-terminal helix-turn-helix domain AFLV_RS14495 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFLV_RS14495 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AFLV_RS14500 PF00005 ABC transporter AFLV_RS14505 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS14510 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFLV_RS14515 PF01228 Glycine radical AFLV_RS14515 PF02901 Pyruvate formate lyase-like AFLV_RS14520 PF04055 Radical SAM superfamily AFLV_RS14525 PF13419 Haloacid dehalogenase-like hydrolase AFLV_RS14530 PF12105 SpoU, rRNA methylase, C-terminal AFLV_RS14530 PF00588 SpoU rRNA Methylase family AFLV_RS14535 PF04073 Aminoacyl-tRNA editing domain AFLV_RS14545 PF00005 ABC transporter AFLV_RS14550 PF10920 Protein of unknown function (DUF2705) AFLV_RS14560 PF10920 Protein of unknown function (DUF2705) AFLV_RS14565 PF10916 Protein of unknown function (DUF2712) AFLV_RS14580 PF07730 Histidine kinase AFLV_RS14580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS14585 PF00072 Response regulator receiver domain AFLV_RS14585 PF01339 CheB methylesterase AFLV_RS14590 PF00005 ABC transporter AFLV_RS14610 PF00171 Aldehyde dehydrogenase family AFLV_RS14610 PF00465 Iron-containing alcohol dehydrogenase AFLV_RS14625 PF00355 Rieske [2Fe-2S] domain AFLV_RS14625 PF01266 FAD dependent oxidoreductase AFLV_RS14630 PF03323 Bacillus/Clostridium GerA spore germination protein AFLV_RS14635 PF03845 Spore germination protein AFLV_RS14645 PF00005 ABC transporter AFLV_RS14645 PF08402 TOBE domain AFLV_RS14650 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS14655 PF00528 Binding-protein-dependent transport system inner membrane component AFLV_RS14660 PF13416 Bacterial extracellular solute-binding protein AFLV_RS14665 PF00854 POT family AFLV_RS14675 PF02687 FtsX-like permease family AFLV_RS14675 PF00005 ABC transporter AFLV_RS14675 PF12704 MacB-like periplasmic core domain AFLV_RS14715 PF02590 Predicted SPOUT methyltransferase AFLV_RS14720 PF13180 PDZ domain AFLV_RS14725 PF00753 Metallo-beta-lactamase superfamily AFLV_RS14730 PF09648 YycH protein AFLV_RS14740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFLV_RS14740 PF00672 HAMP domain AFLV_RS14740 PF00512 His Kinase A (phospho-acceptor) domain AFLV_RS14740 PF13426 PAS domain AFLV_RS14745 PF00072 Response regulator receiver domain AFLV_RS14745 PF00486 Transcriptional regulatory protein, C terminal AFLV_RS14760 PF00709 Adenylosuccinate synthetase AFLV_RS14765 PF00772 DnaB-like helicase N terminal domain AFLV_RS14765 PF03796 DnaB-like helicase C terminal domain AFLV_RS14770 PF03948 Ribosomal protein L9, C-terminal domain AFLV_RS14770 PF01281 Ribosomal protein L9, N-terminal domain AFLV_RS14775 PF02272 DHHA1 domain AFLV_RS14775 PF01368 DHH family AFLV_RS14780 PF09991 Predicted membrane protein (DUF2232) AFLV_RS14785 PF01084 Ribosomal protein S18 AFLV_RS14790 PF00436 Single-strand binding protein family AFLV_RS14795 PF01250 Ribosomal protein S6 AFLV_RS14800 PF06071 Protein of unknown function (DUF933) AFLV_RS14800 PF01926 50S ribosome-binding GTPase AFLV_RS14805 PF06107 Bacterial protein of unknown function (DUF951) AFLV_RS14810 PF00924 Mechanosensitive ion channel AFLV_RS14815 PF06866 Protein of unknown function (DUF1256) AFLV_RS14820 PF04474 Protein of unknown function (DUF554) AFLV_RS14825 PF02195 ParB-like nuclease domain AFLV_RS14825 PF17762 HTH domain found in ParB protein AFLV_RS14830 PF13614 AAA domain AFLV_RS14835 PF17762 HTH domain found in ParB protein AFLV_RS14835 PF02195 ParB-like nuclease domain AFLV_RS14840 PF02527 rRNA small subunit methyltransferase G AFLV_RS14845 PF13932 GidA associated domain AFLV_RS14845 PF01134 Glucose inhibited division protein A AFLV_RS14850 PF12631 MnmE helical domain AFLV_RS14850 PF01926 50S ribosome-binding GTPase AFLV_RS14850 PF10396 GTP-binding protein TrmE N-terminus AFLV_RS14855 PF14804 Jag N-terminus AFLV_RS14855 PF01424 R3H domain AFLV_RS14860 PF02096 60Kd inner membrane protein AFLV_RS14865 PF00825 Ribonuclease P AFLV_RS14870 PF00468 Ribosomal protein L34 AFLV_RS14900 PF00465 Iron-containing alcohol dehydrogenase AFLV_RS14920 PF05593 RHS Repeat AFLV_RS14925 PF05593 RHS Repeat