AFLV_RS00015 SM00382 ATPases associated with a variety of cellular activities AFLV_RS00015 SM00760 Bacterial dnaA protein helix-turn-helix domain AFLV_RS00020 SM00480 DNA polymerase III beta subunit AFLV_RS00035 SM00387 Histidine kinase-like ATPases AFLV_RS00035 SM00433 TopoisomeraseII AFLV_RS00040 SM00434 DNA Topoisomerase IV AFLV_RS00045 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS00080 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS00080 SM01240 AFLV_RS00080 AFLV_RS00085 SM00936 Penicillin-binding protein 5, C-terminal domain AFLV_RS00125 SM00382 ATPases associated with a variety of cellular activities AFLV_RS00135 SM00493 AFLV_RS00135 AFLV_RS00215 SM00966 SpoVT / AbrB like domain AFLV_RS00230 SM01208 AFLV_RS00230 AFLV_RS00235 SM00493 AFLV_RS00235 AFLV_RS00240 SM00650 Ribosomal RNA adenine dimethylases AFLV_RS00280 SM01400 AFLV_RS00280 AFLV_RS00300 SM00487 DEAD-like helicases superfamily AFLV_RS00300 SM00490 helicase superfamily c-terminal domain AFLV_RS00300 SM00982 AFLV_RS00300 AFLV_RS00300 SM01058 CarD-like/TRCF domain AFLV_RS00305 SM00966 SpoVT / AbrB like domain AFLV_RS00320 SM00363 S4 RNA-binding domain AFLV_RS00340 SM00316 Ribosomal protein S1-like RNA-binding domain AFLV_RS00355 SM00331 Sigma factor PP2C-like phosphatases AFLV_RS00355 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFLV_RS00365 SM00220 Serine/Threonine protein kinases, catalytic domain AFLV_RS00370 SM00977 TilS substrate C-terminal domain AFLV_RS00380 SM00382 ATPases associated with a variety of cellular activities AFLV_RS00420 SM00905 Dihydroneopterin aldolase AFLV_RS00470 SM00382 ATPases associated with a variety of cellular activities AFLV_RS00470 SM01086 C-terminal, D2-small domain, of ClpB protein AFLV_RS00475 SM00382 ATPases associated with a variety of cellular activities AFLV_RS00480 SM00670 Large family of predicted nucleotide-binding domains AFLV_RS00505 SM00840 AFLV_RS00505 AFLV_RS00510 SM00535 Ribonuclease III family AFLV_RS00515 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFLV_RS00540 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AFLV_RS00540 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFLV_RS00545 SM00649 Ribosomal protein L11/L12 AFLV_RS00575 SM00663 RNA polymerase I subunit A N-terminus AFLV_RS00595 SM00838 Elongation factor G C-terminus AFLV_RS00595 SM00889 Elongation factor G, domain IV AFLV_RS00605 SM01403 AFLV_RS00605 AFLV_RS00625 SM01382 AFLV_RS00625 AFLV_RS00625 SM01383 AFLV_RS00625 AFLV_RS00640 SM00322 K homology RNA-binding domain AFLV_RS00660 SM01374 AFLV_RS00660 AFLV_RS00665 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFLV_RS00725 SM00316 Ribosomal protein S1-like RNA-binding domain AFLV_RS00745 SM00662 RNA polymerases D AFLV_RS00755 SM00382 ATPases associated with a variety of cellular activities AFLV_RS00760 SM00382 ATPases associated with a variety of cellular activities AFLV_RS00790 SM00646 AFLV_RS00790 AFLV_RS00805 SM01251 AFLV_RS00805 AFLV_RS00945 SM00563 Phosphate acyltransferases AFLV_RS01000 SM00966 SpoVT / AbrB like domain AFLV_RS01035 SM00387 Histidine kinase-like ATPases AFLV_RS01040 SM00421 helix_turn_helix, Lux Regulon AFLV_RS01040 SM00448 cheY-homologous receiver domain AFLV_RS01045 SM00422 helix_turn_helix, mercury resistance AFLV_RS01085 SM00878 Biotin carboxylase C-terminal domain AFLV_RS01150 SM00487 DEAD-like helicases superfamily AFLV_RS01150 SM00490 helicase superfamily c-terminal domain AFLV_RS01165 SM01005 Alanine racemase, C-terminal domain AFLV_RS01180 SM00316 Ribosomal protein S1-like RNA-binding domain AFLV_RS01180 SM00732 Likely ribonuclease with RNase H fold. AFLV_RS01185 SM00731 SprT homologues. AFLV_RS01295 SM00382 ATPases associated with a variety of cellular activities AFLV_RS01300 SM00881 CoA binding domain AFLV_RS01315 SM00883 Chaperonin 10 Kd subunit AFLV_RS01350 SM01209 AFLV_RS01350 AFLV_RS01420 SM01001 AIR carboxylase AFLV_RS01430 SM00998 Adenylosuccinate lyase C-terminus AFLV_RS01445 SM01211 AFLV_RS01445 AFLV_RS01470 SM00798 AICARFT/IMPCHase bienzyme AFLV_RS01470 SM00851 MGS-like domain AFLV_RS01475 SM01209 AFLV_RS01475 AFLV_RS01475 SM01210 AFLV_RS01475 AFLV_RS01510 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFLV_RS01510 SM00292 breast cancer carboxy-terminal domain AFLV_RS01510 SM00532 Ligase N family AFLV_RS01575 SM00845 GatB domain AFLV_RS01685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS01705 SM00387 Histidine kinase-like ATPases AFLV_RS01705 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS01710 SM00448 cheY-homologous receiver domain AFLV_RS01710 SM00862 Transcriptional regulatory protein, C terminal AFLV_RS01725 SM00450 Rhodanese Homology Domain AFLV_RS01725 SM00849 Metallo-beta-lactamase superfamily AFLV_RS01730 SM00387 Histidine kinase-like ATPases AFLV_RS01735 SM00421 helix_turn_helix, Lux Regulon AFLV_RS01735 SM00448 cheY-homologous receiver domain AFLV_RS01745 SM00046 Diacylglycerol kinase catalytic domain (presumed) AFLV_RS01765 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS01800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS01820 SM00450 Rhodanese Homology Domain AFLV_RS01830 SM00899 AFLV_RS01830 AFLV_RS01890 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS01900 SM00226 Low molecular weight phosphatase family AFLV_RS01955 SM00478 endonuclease III AFLV_RS01970 SM00487 DEAD-like helicases superfamily AFLV_RS01970 SM00490 helicase superfamily c-terminal domain AFLV_RS01985 SM00419 helix_turn_helix, cAMP Regulatory protein AFLV_RS01995 SM00829 Enoylreductase AFLV_RS02000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS02000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS02030 SM00822 AFLV_RS02030 AFLV_RS02055 SM00478 endonuclease III AFLV_RS02075 SM00382 ATPases associated with a variety of cellular activities AFLV_RS02080 SM00382 ATPases associated with a variety of cellular activities AFLV_RS02115 SM00382 ATPases associated with a variety of cellular activities AFLV_RS02285 SM00642 Alpha-amylase domain AFLV_RS02400 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFLV_RS02405 SM01234 AFLV_RS02405 AFLV_RS02435 SM00382 ATPases associated with a variety of cellular activities AFLV_RS02455 SM00382 ATPases associated with a variety of cellular activities AFLV_RS02470 SM00257 Lysin motif AFLV_RS02470 SM00644 AFLV_RS02470 AFLV_RS02470 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AFLV_RS02485 SM00014 Acid phosphatase homologues AFLV_RS02515 SM00729 Elongator protein 3, MiaB family, Radical SAM AFLV_RS02535 SM00450 Rhodanese Homology Domain AFLV_RS02560 SM00420 helix_turn_helix, Deoxyribose operon repressor AFLV_RS02595 SM00642 Alpha-amylase domain AFLV_RS02615 SM00849 Metallo-beta-lactamase superfamily AFLV_RS02650 SM00382 ATPases associated with a variety of cellular activities AFLV_RS02650 SM00843 AFLV_RS02650 AFLV_RS02685 SM00842 Cell division protein FtsA AFLV_RS02690 SM00830 Chorismate mutase type II AFLV_RS02695 SM00354 helix_turn _helix lactose operon repressor AFLV_RS02705 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS02725 SM00363 S4 RNA-binding domain AFLV_RS02730 SM00363 S4 RNA-binding domain AFLV_RS02730 SM01390 AFLV_RS02730 AFLV_RS02735 SM00267 diguanylate cyclase AFLV_RS02740 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFLV_RS02765 SM00981 AFLV_RS02765 AFLV_RS02840 SM00849 Metallo-beta-lactamase superfamily AFLV_RS02845 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS02870 SM00481 DNA polymerase alpha chain like domain AFLV_RS02875 SM00919 Malic enzyme, NAD binding domain AFLV_RS02875 SM01274 AFLV_RS02875 AFLV_RS02880 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFLV_RS02925 SM01329 AFLV_RS02925 AFLV_RS02940 SM00448 cheY-homologous receiver domain AFLV_RS02940 SM00862 Transcriptional regulatory protein, C terminal AFLV_RS02945 SM00091 PAS domain AFLV_RS02945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS02945 SM00387 Histidine kinase-like ATPases AFLV_RS02945 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS02950 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFLV_RS02950 SM00474 3'-5' exonuclease AFLV_RS02950 SM00475 5'-3' exonuclease AFLV_RS02950 SM00482 DNA polymerase A domain AFLV_RS02955 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFLV_RS02955 SM01232 AFLV_RS02955 AFLV_RS02970 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFLV_RS02995 SM00382 ATPases associated with a variety of cellular activities AFLV_RS03005 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFLV_RS03040 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFLV_RS03045 SM01007 Class II Aldolase and Adducin N-terminal domain AFLV_RS03065 SM00813 Alpha-L-arabinofuranosidase C-terminus AFLV_RS03080 SM00354 helix_turn _helix lactose operon repressor AFLV_RS03100 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFLV_RS03110 SM00873 B3/4 domain AFLV_RS03110 SM00874 tRNA synthetase B5 domain AFLV_RS03110 SM00896 Ferredoxin-fold anticodon binding domain AFLV_RS03150 SM00387 Histidine kinase-like ATPases AFLV_RS03155 SM00421 helix_turn_helix, Lux Regulon AFLV_RS03155 SM00448 cheY-homologous receiver domain AFLV_RS03190 SM00347 helix_turn_helix multiple antibiotic resistance protein AFLV_RS03210 SM00481 DNA polymerase alpha chain like domain AFLV_RS03210 SM00483 DNA polymerase X family AFLV_RS03215 SM00463 Small MutS-related domain AFLV_RS03215 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFLV_RS03215 SM00534 ATPase domain of DNA mismatch repair MUTS family AFLV_RS03240 SM00893 Electron transfer flavoprotein domain AFLV_RS03245 SM00893 Electron transfer flavoprotein domain AFLV_RS03295 SM00465 GIY-YIG type nucleases (URI domain) AFLV_RS03325 SM00421 helix_turn_helix, Lux Regulon AFLV_RS03335 SM00909 Sporulation and spore germination AFLV_RS03380 SM00917 LeuA allosteric (dimerisation) domain AFLV_RS03385 SM01329 AFLV_RS03385 AFLV_RS03410 SM00382 ATPases associated with a variety of cellular activities AFLV_RS03410 SM00994 ClpX C4-type zinc finger AFLV_RS03410 SM01086 C-terminal, D2-small domain, of ClpB protein AFLV_RS03415 SM00382 ATPases associated with a variety of cellular activities AFLV_RS03420 SM00382 ATPases associated with a variety of cellular activities AFLV_RS03420 SM00464 Found in ATP-dependent protease La (LON) AFLV_RS03455 SM01004 Delta-aminolevulinic acid dehydratase AFLV_RS03465 SM00257 Lysin motif AFLV_RS03490 SM00635 Bacterial Ig-like domain 2 AFLV_RS03495 SM00248 ankyrin repeats AFLV_RS03525 SM01208 AFLV_RS03525 AFLV_RS03530 SM00382 ATPases associated with a variety of cellular activities AFLV_RS03535 SM00382 ATPases associated with a variety of cellular activities AFLV_RS03590 SM00857 Resolvase, N terminal domain AFLV_RS03600 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS03640 SM00990 AFLV_RS03640 AFLV_RS03680 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFLV_RS03695 SM00507 HNH nucleases AFLV_RS03820 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS03895 SM01317 AFLV_RS03895 AFLV_RS03940 SM00257 Lysin motif AFLV_RS03965 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFLV_RS03970 SM00382 ATPases associated with a variety of cellular activities AFLV_RS03995 SM01323 AFLV_RS03995 AFLV_RS04040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS04040 SM00954 Region found in RelA / SpoT proteins AFLV_RS04055 SM00287 Bacterial SH3 domain homologues AFLV_RS04055 SM00646 AFLV_RS04055 AFLV_RS04085 SM00382 ATPases associated with a variety of cellular activities AFLV_RS04105 SM00028 Tetratricopeptide repeats AFLV_RS04105 SM00671 Sel1-like repeats. AFLV_RS04110 SM00382 ATPases associated with a variety of cellular activities AFLV_RS04125 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFLV_RS04135 SM00732 Likely ribonuclease with RNase H fold. AFLV_RS04220 SM00318 Staphylococcal nuclease homologues AFLV_RS04245 SM00487 DEAD-like helicases superfamily AFLV_RS04245 SM00490 helicase superfamily c-terminal domain AFLV_RS04275 SM00382 ATPases associated with a variety of cellular activities AFLV_RS04300 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS04305 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS04325 SM00885 D5 N terminal like AFLV_RS04325 SM00942 Primase C terminal 1 (PriCT-1) AFLV_RS04415 SM00857 Resolvase, N terminal domain AFLV_RS04470 SM01103 AFLV_RS04470 AFLV_RS04480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS04500 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFLV_RS04510 SM00849 Metallo-beta-lactamase superfamily AFLV_RS04525 SM00100 Cyclic nucleotide-monophosphate binding domain AFLV_RS04525 SM00419 helix_turn_helix, cAMP Regulatory protein AFLV_RS04550 SM00838 Elongation factor G C-terminus AFLV_RS04555 SM00729 Elongator protein 3, MiaB family, Radical SAM AFLV_RS04575 SM00271 DnaJ molecular chaperone homology domain AFLV_RS04590 SM00729 Elongator protein 3, MiaB family, Radical SAM AFLV_RS04655 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS04665 SM00400 zinc finger AFLV_RS04665 SM00493 AFLV_RS04665 AFLV_RS04705 SM00487 DEAD-like helicases superfamily AFLV_RS04705 SM00490 helicase superfamily c-terminal domain AFLV_RS04710 SM00518 AP endonuclease family 2 AFLV_RS04725 SM00382 ATPases associated with a variety of cellular activities AFLV_RS04760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS04760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS04805 SM00382 ATPases associated with a variety of cellular activities AFLV_RS04850 SM00028 Tetratricopeptide repeats AFLV_RS04880 SM00631 AFLV_RS04880 AFLV_RS04890 SM00849 Metallo-beta-lactamase superfamily AFLV_RS04905 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFLV_RS04915 SM00382 ATPases associated with a variety of cellular activities AFLV_RS04965 SM00487 DEAD-like helicases superfamily AFLV_RS04965 SM00490 helicase superfamily c-terminal domain AFLV_RS04985 SM00450 Rhodanese Homology Domain AFLV_RS05010 SM00529 Helix-turn-helix diphteria tox regulatory element AFLV_RS05045 SM00841 Elongation factor P, C-terminal AFLV_RS05045 SM01185 AFLV_RS05045 AFLV_RS05065 SM00382 ATPases associated with a variety of cellular activities AFLV_RS05110 SM00878 Biotin carboxylase C-terminal domain AFLV_RS05145 SM00861 Transketolase, pyrimidine binding domain AFLV_RS05150 SM00363 S4 RNA-binding domain AFLV_RS05165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFLV_RS05170 SM00448 cheY-homologous receiver domain AFLV_RS05185 SM00091 PAS domain AFLV_RS05185 SM00382 ATPases associated with a variety of cellular activities AFLV_RS05195 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFLV_RS05215 SM00861 Transketolase, pyrimidine binding domain AFLV_RS05270 SM00260 Two component signalling adaptor domain AFLV_RS05275 SM01350 AFLV_RS05275 AFLV_RS05310 SM00849 Metallo-beta-lactamase superfamily AFLV_RS05325 SM00704 CDGSH-type zinc finger. Function unknown. AFLV_RS05385 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AFLV_RS05390 SM00936 Penicillin-binding protein 5, C-terminal domain AFLV_RS05400 SM00387 Histidine kinase-like ATPases AFLV_RS05525 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFLV_RS05565 SM00363 S4 RNA-binding domain AFLV_RS05585 SM00448 cheY-homologous receiver domain AFLV_RS05585 SM00862 Transcriptional regulatory protein, C terminal AFLV_RS05590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS05590 SM00387 Histidine kinase-like ATPases AFLV_RS05590 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS05605 SM00382 ATPases associated with a variety of cellular activities AFLV_RS05630 SM00855 Phosphoglycerate mutase family AFLV_RS05680 SM00487 DEAD-like helicases superfamily AFLV_RS05680 SM00490 helicase superfamily c-terminal domain AFLV_RS05690 SM00257 Lysin motif AFLV_RS05710 SM00422 helix_turn_helix, mercury resistance AFLV_RS05725 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFLV_RS05775 SM00563 Phosphate acyltransferases AFLV_RS05780 SM00316 Ribosomal protein S1-like RNA-binding domain AFLV_RS05785 SM01240 AFLV_RS05785 AFLV_RS05830 SM00411 bacterial (prokaryotic) histone like domain AFLV_RS05860 SM00562 AFLV_RS05860 AFLV_RS05865 SM00138 Methyltransferase, chemotaxis proteins AFLV_RS05930 SM00028 Tetratricopeptide repeats AFLV_RS05935 SM00914 AFLV_RS05935 AFLV_RS05985 SM00851 MGS-like domain AFLV_RS06025 SM00479 AFLV_RS06025 AFLV_RS06025 SM00491 AFLV_RS06025 AFLV_RS06055 SM00478 endonuclease III AFLV_RS06055 SM00525 AFLV_RS06055 AFLV_RS06080 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFLV_RS06135 SM00267 diguanylate cyclase AFLV_RS06155 SM00052 Putative diguanylate phosphodiesterase AFLV_RS06155 SM00267 diguanylate cyclase AFLV_RS06160 SM00382 ATPases associated with a variety of cellular activities AFLV_RS06210 SM00487 DEAD-like helicases superfamily AFLV_RS06210 SM00490 helicase superfamily c-terminal domain AFLV_RS06270 SM00342 helix_turn_helix, arabinose operon control protein AFLV_RS06275 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFLV_RS06295 SM00829 Enoylreductase AFLV_RS06385 SM01266 AFLV_RS06385 AFLV_RS06390 SM00729 Elongator protein 3, MiaB family, Radical SAM AFLV_RS06435 SM00640 Glycosyl hydrolases family 32 AFLV_RS06580 SM00871 Bacterial transcription activator, effector binding domain AFLV_RS06590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS06665 SM00893 Electron transfer flavoprotein domain AFLV_RS06670 SM00893 Electron transfer flavoprotein domain AFLV_RS06770 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFLV_RS06770 SM00475 5'-3' exonuclease AFLV_RS06795 SM00382 ATPases associated with a variety of cellular activities AFLV_RS06810 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFLV_RS06820 SM00382 ATPases associated with a variety of cellular activities AFLV_RS06835 SM01245 AFLV_RS06835 AFLV_RS06845 SM00422 helix_turn_helix, mercury resistance AFLV_RS06900 SM00382 ATPases associated with a variety of cellular activities AFLV_RS06940 SM00450 Rhodanese Homology Domain AFLV_RS06945 SM00450 Rhodanese Homology Domain AFLV_RS06960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS06960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS06975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS06975 SM00387 Histidine kinase-like ATPases AFLV_RS06980 SM00342 helix_turn_helix, arabinose operon control protein AFLV_RS06980 SM00448 cheY-homologous receiver domain AFLV_RS06990 SM00382 ATPases associated with a variety of cellular activities AFLV_RS07000 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFLV_RS07065 SM00382 ATPases associated with a variety of cellular activities AFLV_RS07070 SM00382 ATPases associated with a variety of cellular activities AFLV_RS07100 SM00479 AFLV_RS07100 AFLV_RS07105 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFLV_RS07115 SM00052 Putative diguanylate phosphodiesterase AFLV_RS07115 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFLV_RS07115 SM00091 PAS domain AFLV_RS07115 SM00267 diguanylate cyclase AFLV_RS07120 SM00710 Parallel beta-helix repeats AFLV_RS07120 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AFLV_RS07135 SM00382 ATPases associated with a variety of cellular activities AFLV_RS07140 SM00855 Phosphoglycerate mutase family AFLV_RS07145 SM00318 Staphylococcal nuclease homologues AFLV_RS07170 SM00331 Sigma factor PP2C-like phosphatases AFLV_RS07170 SM00448 cheY-homologous receiver domain AFLV_RS07190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS07205 SM00052 Putative diguanylate phosphodiesterase AFLV_RS07205 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFLV_RS07205 SM00091 PAS domain AFLV_RS07205 SM00267 diguanylate cyclase AFLV_RS07210 SM00981 AFLV_RS07210 AFLV_RS07215 SM00491 AFLV_RS07215 AFLV_RS07320 SM00729 Elongator protein 3, MiaB family, Radical SAM AFLV_RS07320 SM00876 Biotin and Thiamin Synthesis associated domain AFLV_RS07385 SM00387 Histidine kinase-like ATPases AFLV_RS07385 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS07420 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFLV_RS07425 SM00382 ATPases associated with a variety of cellular activities AFLV_RS07445 SM00357 Cold shock protein domain AFLV_RS07450 SM01230 AFLV_RS07450 AFLV_RS07460 SM00382 ATPases associated with a variety of cellular activities AFLV_RS07475 SM00849 Metallo-beta-lactamase superfamily AFLV_RS07490 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFLV_RS07495 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFLV_RS07505 SM00226 Low molecular weight phosphatase family AFLV_RS07525 SM00822 AFLV_RS07525 AFLV_RS07530 SM00382 ATPases associated with a variety of cellular activities AFLV_RS07550 SM00422 helix_turn_helix, mercury resistance AFLV_RS07560 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFLV_RS07575 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFLV_RS07575 SM00493 AFLV_RS07575 AFLV_RS07590 SM00327 von Willebrand factor (vWF) type A domain AFLV_RS07595 SM00382 ATPases associated with a variety of cellular activities AFLV_RS07630 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFLV_RS07630 SM00866 AFLV_RS07630 AFLV_RS07635 SM00642 Alpha-amylase domain AFLV_RS07650 SM00434 DNA Topoisomerase IV AFLV_RS07655 SM00387 Histidine kinase-like ATPases AFLV_RS07655 SM00433 TopoisomeraseII AFLV_RS07660 SM00881 CoA binding domain AFLV_RS07665 SM01207 AFLV_RS07665 AFLV_RS07725 SM00465 GIY-YIG type nucleases (URI domain) AFLV_RS07780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS07780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS07790 SM00387 Histidine kinase-like ATPases AFLV_RS07790 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS07810 SM00420 helix_turn_helix, Deoxyribose operon repressor AFLV_RS07810 SM01134 AFLV_RS07810 AFLV_RS07815 SM00267 diguanylate cyclase AFLV_RS07815 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS07845 SM00357 Cold shock protein domain AFLV_RS07915 SM00448 cheY-homologous receiver domain AFLV_RS07930 SM00861 Transketolase, pyrimidine binding domain AFLV_RS07940 SM00857 Resolvase, N terminal domain AFLV_RS07945 SM00257 Lysin motif AFLV_RS07955 SM01230 AFLV_RS07955 AFLV_RS07960 SM00422 helix_turn_helix, mercury resistance AFLV_RS08010 SM00382 ATPases associated with a variety of cellular activities AFLV_RS08025 SM00853 MutL C terminal dimerisation domain AFLV_RS08025 SM01340 AFLV_RS08025 AFLV_RS08030 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFLV_RS08030 SM00534 ATPase domain of DNA mismatch repair MUTS family AFLV_RS08045 SM00729 Elongator protein 3, MiaB family, Radical SAM AFLV_RS08075 SM00322 K homology RNA-binding domain AFLV_RS08075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS08080 SM00382 ATPases associated with a variety of cellular activities AFLV_RS08085 SM00852 Probable molybdopterin binding domain AFLV_RS08095 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS08130 SM00450 Rhodanese Homology Domain AFLV_RS08135 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFLV_RS08135 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFLV_RS08135 SM00493 AFLV_RS08135 AFLV_RS08150 SM00422 helix_turn_helix, mercury resistance AFLV_RS08210 SM00387 Histidine kinase-like ATPases AFLV_RS08210 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS08225 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFLV_RS08270 SM00346 helix_turn_helix isocitrate lyase regulation AFLV_RS08290 SM00382 ATPases associated with a variety of cellular activities AFLV_RS08295 SM00244 prohibitin homologues AFLV_RS08305 SM00257 Lysin motif AFLV_RS08315 SM00347 helix_turn_helix multiple antibiotic resistance protein AFLV_RS08355 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFLV_RS08390 SM00382 ATPases associated with a variety of cellular activities AFLV_RS08450 SM00849 Metallo-beta-lactamase superfamily AFLV_RS08460 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS08480 SM00966 SpoVT / AbrB like domain AFLV_RS08540 SM00567 E-Z type HEAT repeats AFLV_RS08540 SM00932 Scaffold protein Nfu/NifU N terminal AFLV_RS08555 SM00950 AFLV_RS08555 AFLV_RS08605 SM00382 ATPases associated with a variety of cellular activities AFLV_RS08655 SM00347 helix_turn_helix multiple antibiotic resistance protein AFLV_RS08675 SM00267 diguanylate cyclase AFLV_RS08705 SM00854 Bacterial capsule synthesis protein PGA_cap AFLV_RS08775 SM00382 ATPases associated with a variety of cellular activities AFLV_RS08785 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFLV_RS08785 SM00866 AFLV_RS08785 AFLV_RS08790 SM00382 ATPases associated with a variety of cellular activities AFLV_RS08790 SM00843 AFLV_RS08790 AFLV_RS08805 SM00849 Metallo-beta-lactamase superfamily AFLV_RS08810 SM01130 AFLV_RS08810 AFLV_RS08820 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFLV_RS08830 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFLV_RS08850 SM00316 Ribosomal protein S1-like RNA-binding domain AFLV_RS08850 SM00322 K homology RNA-binding domain AFLV_RS08855 SM01387 AFLV_RS08855 AFLV_RS08860 SM00904 Riboflavin kinase AFLV_RS08895 SM00316 Ribosomal protein S1-like RNA-binding domain AFLV_RS08895 SM00322 K homology RNA-binding domain AFLV_RS08905 SM00479 AFLV_RS08905 AFLV_RS08905 SM00481 DNA polymerase alpha chain like domain AFLV_RS08915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFLV_RS08985 SM00260 Two component signalling adaptor domain AFLV_RS08990 SM00073 Histidine Phosphotransfer domain AFLV_RS08990 SM00260 Two component signalling adaptor domain AFLV_RS08990 SM00387 Histidine kinase-like ATPases AFLV_RS08990 SM01231 AFLV_RS08990 AFLV_RS08995 SM00448 cheY-homologous receiver domain AFLV_RS09005 SM00382 ATPases associated with a variety of cellular activities AFLV_RS09005 SM00962 SRP54-type protein, GTPase domain AFLV_RS09040 SM00448 cheY-homologous receiver domain AFLV_RS09095 SM00382 ATPases associated with a variety of cellular activities AFLV_RS09135 SM00382 ATPases associated with a variety of cellular activities AFLV_RS09135 SM01086 C-terminal, D2-small domain, of ClpB protein AFLV_RS09155 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFLV_RS09155 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFLV_RS09155 SM00493 AFLV_RS09155 AFLV_RS09165 SM00881 CoA binding domain AFLV_RS09230 SM00382 ATPases associated with a variety of cellular activities AFLV_RS09230 SM00962 SRP54-type protein, GTPase domain AFLV_RS09230 SM00963 SRP54-type protein, helical bundle domain AFLV_RS09240 SM00382 ATPases associated with a variety of cellular activities AFLV_RS09240 SM00962 SRP54-type protein, GTPase domain AFLV_RS09240 SM00963 SRP54-type protein, helical bundle domain AFLV_RS09245 SM00968 SMC proteins Flexible Hinge Domain AFLV_RS09255 SM00358 Double-stranded RNA binding motif AFLV_RS09255 SM00535 Ribonuclease III family AFLV_RS09265 SM00822 AFLV_RS09265 AFLV_RS09270 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFLV_RS09285 SM00487 DEAD-like helicases superfamily AFLV_RS09285 SM00490 helicase superfamily c-terminal domain AFLV_RS09300 SM01120 AFLV_RS09300 AFLV_RS09300 SM01121 AFLV_RS09300 AFLV_RS09320 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AFLV_RS09335 SM00220 Serine/Threonine protein kinases, catalytic domain AFLV_RS09335 SM00740 AFLV_RS09335 AFLV_RS09340 SM00331 Sigma factor PP2C-like phosphatases AFLV_RS09340 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFLV_RS09365 SM00487 DEAD-like helicases superfamily AFLV_RS09365 SM00490 helicase superfamily c-terminal domain AFLV_RS09375 SM01409 AFLV_RS09375 AFLV_RS09380 SM00072 Guanylate kinase homologues. AFLV_RS09390 SM00831 Cation transporter/ATPase, N-terminus AFLV_RS09410 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AFLV_RS09425 SM00851 MGS-like domain AFLV_RS09425 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFLV_RS09430 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AFLV_RS09455 SM00363 S4 RNA-binding domain AFLV_RS09480 SM00363 S4 RNA-binding domain AFLV_RS09525 SM00864 Tubulin/FtsZ family, GTPase domain AFLV_RS09525 SM00865 Tubulin/FtsZ family, C-terminal domain AFLV_RS09530 SM00842 Cell division protein FtsA AFLV_RS09585 SM00740 AFLV_RS09585 AFLV_RS09590 SM00740 AFLV_RS09590 AFLV_RS09645 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFLV_RS09710 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS09770 SM00878 Biotin carboxylase C-terminal domain AFLV_RS09790 SM00670 Large family of predicted nucleotide-binding domains AFLV_RS09820 SM00838 Elongation factor G C-terminus AFLV_RS09885 SM00861 Transketolase, pyrimidine binding domain AFLV_RS09910 SM00849 Metallo-beta-lactamase superfamily AFLV_RS09955 SM00052 Putative diguanylate phosphodiesterase AFLV_RS09995 SM00052 Putative diguanylate phosphodiesterase AFLV_RS09995 SM00267 diguanylate cyclase AFLV_RS10015 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFLV_RS10015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS10015 SM00387 Histidine kinase-like ATPases AFLV_RS10015 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS10015 SM00448 cheY-homologous receiver domain AFLV_RS10020 SM00448 cheY-homologous receiver domain AFLV_RS10040 SM00267 diguanylate cyclase AFLV_RS10040 SM00448 cheY-homologous receiver domain AFLV_RS10045 SM00260 Two component signalling adaptor domain AFLV_RS10045 SM00448 cheY-homologous receiver domain AFLV_RS10060 SM00387 Histidine kinase-like ATPases AFLV_RS10060 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS10070 SM00914 AFLV_RS10070 AFLV_RS10090 SM00267 diguanylate cyclase AFLV_RS10090 SM00448 cheY-homologous receiver domain AFLV_RS10095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFLV_RS10095 SM00387 Histidine kinase-like ATPases AFLV_RS10095 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS10100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS10100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS10120 SM01061 CAT RNA binding domain AFLV_RS10130 SM00257 Lysin motif AFLV_RS10175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS10200 SM00387 Histidine kinase-like ATPases AFLV_RS10200 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS10280 SM00448 cheY-homologous receiver domain AFLV_RS10280 SM00862 Transcriptional regulatory protein, C terminal AFLV_RS10285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS10285 SM00387 Histidine kinase-like ATPases AFLV_RS10285 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS10290 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFLV_RS10290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS10305 SM00382 ATPases associated with a variety of cellular activities AFLV_RS10305 SM01086 C-terminal, D2-small domain, of ClpB protein AFLV_RS10320 SM00382 ATPases associated with a variety of cellular activities AFLV_RS10340 SM00387 Histidine kinase-like ATPases AFLV_RS10340 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS10355 SM01007 Class II Aldolase and Adducin N-terminal domain AFLV_RS10395 SM00382 ATPases associated with a variety of cellular activities AFLV_RS10405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS10410 SM00091 PAS domain AFLV_RS10410 SM00387 Histidine kinase-like ATPases AFLV_RS10410 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS10430 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFLV_RS10430 SM00895 AFLV_RS10430 AFLV_RS10465 SM00729 Elongator protein 3, MiaB family, Radical SAM AFLV_RS10505 SM00354 helix_turn _helix lactose operon repressor AFLV_RS10510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS10510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS10550 SM00387 Histidine kinase-like ATPases AFLV_RS10550 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS10595 SM00919 Malic enzyme, NAD binding domain AFLV_RS10595 SM01274 AFLV_RS10595 AFLV_RS10605 SM00870 AFLV_RS10605 AFLV_RS10610 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS10615 SM00219 Tyrosine kinase, catalytic domain AFLV_RS10660 SM00487 DEAD-like helicases superfamily AFLV_RS10710 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS10855 SM00984 UDP binding domain AFLV_RS10920 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS10920 SM00924 MgtE intracellular N domain AFLV_RS10955 SM00954 Region found in RelA / SpoT proteins AFLV_RS10965 SM01118 AFLV_RS10965 AFLV_RS11010 SM00155 Phospholipase D. Active site motifs. AFLV_RS11025 SM00382 ATPases associated with a variety of cellular activities AFLV_RS11030 SM00382 ATPases associated with a variety of cellular activities AFLV_RS11080 SM00825 Beta-ketoacyl synthase AFLV_RS11105 SM00382 ATPases associated with a variety of cellular activities AFLV_RS11105 SM01086 C-terminal, D2-small domain, of ClpB protein AFLV_RS11120 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFLV_RS11125 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AFLV_RS11145 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFLV_RS11150 SM00100 Cyclic nucleotide-monophosphate binding domain AFLV_RS11150 SM00419 helix_turn_helix, cAMP Regulatory protein AFLV_RS11180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS11180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS11200 SM01018 B12 binding domain AFLV_RS11275 SM00382 ATPases associated with a variety of cellular activities AFLV_RS11300 SM00354 helix_turn _helix lactose operon repressor AFLV_RS11310 SM00642 Alpha-amylase domain AFLV_RS11330 SM00642 Alpha-amylase domain AFLV_RS11335 SM00342 helix_turn_helix, arabinose operon control protein AFLV_RS11355 SM00563 Phosphate acyltransferases AFLV_RS11390 SM00052 Putative diguanylate phosphodiesterase AFLV_RS11390 SM00091 PAS domain AFLV_RS11390 SM00267 diguanylate cyclase AFLV_RS11425 SM00857 Resolvase, N terminal domain AFLV_RS11565 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS11590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS11590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS11595 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS11600 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS11605 SM00421 helix_turn_helix, Lux Regulon AFLV_RS11610 SM00052 Putative diguanylate phosphodiesterase AFLV_RS11615 SM00052 Putative diguanylate phosphodiesterase AFLV_RS11615 SM00091 PAS domain AFLV_RS11615 SM00267 diguanylate cyclase AFLV_RS11620 SM00382 ATPases associated with a variety of cellular activities AFLV_RS11705 SM00479 AFLV_RS11705 AFLV_RS11710 SM00100 Cyclic nucleotide-monophosphate binding domain AFLV_RS11710 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS11735 SM00849 Metallo-beta-lactamase superfamily AFLV_RS11740 SM00642 Alpha-amylase domain AFLV_RS11760 SM00354 helix_turn _helix lactose operon repressor AFLV_RS11795 SM00450 Rhodanese Homology Domain AFLV_RS11810 SM00382 ATPases associated with a variety of cellular activities AFLV_RS11840 SM00347 helix_turn_helix multiple antibiotic resistance protein AFLV_RS11870 SM00729 Elongator protein 3, MiaB family, Radical SAM AFLV_RS11900 SM00382 ATPases associated with a variety of cellular activities AFLV_RS11915 SM00382 ATPases associated with a variety of cellular activities AFLV_RS11925 SM00062 Bacterial periplasmic substrate-binding proteins AFLV_RS11925 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFLV_RS11930 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS11930 SM01091 Transporter associated domain AFLV_RS11970 SM00382 ATPases associated with a variety of cellular activities AFLV_RS11985 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFLV_RS11995 SM00642 Alpha-amylase domain AFLV_RS12005 SM00347 helix_turn_helix multiple antibiotic resistance protein AFLV_RS12015 SM00244 prohibitin homologues AFLV_RS12020 SM00244 prohibitin homologues AFLV_RS12045 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS12075 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS12075 SM01091 Transporter associated domain AFLV_RS12085 SM00450 Rhodanese Homology Domain AFLV_RS12085 SM00849 Metallo-beta-lactamase superfamily AFLV_RS12110 SM00450 Rhodanese Homology Domain AFLV_RS12115 SM00450 Rhodanese Homology Domain AFLV_RS12125 SM00763 PrkA AAA domain AFLV_RS12140 SM00567 E-Z type HEAT repeats AFLV_RS12145 SM00873 B3/4 domain AFLV_RS12155 SM00354 helix_turn _helix lactose operon repressor AFLV_RS12290 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS12295 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFLV_RS12300 SM00116 Domain in cystathionine beta-synthase and other proteins. AFLV_RS12300 SM01091 Transporter associated domain AFLV_RS12305 SM00422 helix_turn_helix, mercury resistance AFLV_RS12340 SM00382 ATPases associated with a variety of cellular activities AFLV_RS12450 SM00316 Ribosomal protein S1-like RNA-binding domain AFLV_RS12455 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS12465 SM00344 helix_turn_helix ASNC type AFLV_RS12625 SM00729 Elongator protein 3, MiaB family, Radical SAM AFLV_RS12705 SM00729 Elongator protein 3, MiaB family, Radical SAM AFLV_RS12765 SM00382 ATPases associated with a variety of cellular activities AFLV_RS12845 SM00382 ATPases associated with a variety of cellular activities AFLV_RS12865 SM00382 ATPases associated with a variety of cellular activities AFLV_RS12865 SM00930 AFLV_RS12865 AFLV_RS12885 SM00421 helix_turn_helix, Lux Regulon AFLV_RS12905 SM00493 AFLV_RS12905 AFLV_RS12990 SM00382 ATPases associated with a variety of cellular activities AFLV_RS13010 SM00316 Ribosomal protein S1-like RNA-binding domain AFLV_RS13010 SM00357 Cold shock protein domain AFLV_RS13010 SM00955 AFLV_RS13010 AFLV_RS13095 SM01192 AFLV_RS13095 AFLV_RS13095 SM01193 AFLV_RS13095 AFLV_RS13115 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFLV_RS13175 SM00028 Tetratricopeptide repeats AFLV_RS13265 SM00382 ATPases associated with a variety of cellular activities AFLV_RS13270 SM00487 DEAD-like helicases superfamily AFLV_RS13270 SM00490 helicase superfamily c-terminal domain AFLV_RS13280 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFLV_RS13290 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFLV_RS13290 SM00245 tail specific protease AFLV_RS13325 SM00382 ATPases associated with a variety of cellular activities AFLV_RS13340 SM00937 AFLV_RS13340 AFLV_RS13345 SM00957 SecA DEAD-like domain AFLV_RS13345 SM00958 SecA preprotein cross-linking domain AFLV_RS13360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS13390 SM00028 Tetratricopeptide repeats AFLV_RS13410 SM00028 Tetratricopeptide repeats AFLV_RS13500 SM00487 DEAD-like helicases superfamily AFLV_RS13500 SM00490 helicase superfamily c-terminal domain AFLV_RS13515 SM00421 helix_turn_helix, Lux Regulon AFLV_RS13515 SM00448 cheY-homologous receiver domain AFLV_RS13520 SM00387 Histidine kinase-like ATPases AFLV_RS13555 SM00287 Bacterial SH3 domain homologues AFLV_RS13555 SM00646 AFLV_RS13555 AFLV_RS13575 SM00060 Fibronectin type 3 domain AFLV_RS13575 SM00632 AFLV_RS13575 AFLV_RS13575 SM00642 Alpha-amylase domain AFLV_RS13575 SM01065 Starch binding domain AFLV_RS13595 SM00382 ATPases associated with a variety of cellular activities AFLV_RS13635 SM00387 Histidine kinase-like ATPases AFLV_RS13640 SM00421 helix_turn_helix, Lux Regulon AFLV_RS13640 SM00448 cheY-homologous receiver domain AFLV_RS13710 SM00382 ATPases associated with a variety of cellular activities AFLV_RS13740 SM00957 SecA DEAD-like domain AFLV_RS13740 SM00958 SecA preprotein cross-linking domain AFLV_RS13755 SM00530 Helix-turn-helix XRE-family like proteins AFLV_RS13800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS13800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS13835 SM00316 Ribosomal protein S1-like RNA-binding domain AFLV_RS13865 SM00487 DEAD-like helicases superfamily AFLV_RS13865 SM00490 helicase superfamily c-terminal domain AFLV_RS13880 SM00984 UDP binding domain AFLV_RS13900 SM00382 ATPases associated with a variety of cellular activities AFLV_RS13915 SM00354 helix_turn _helix lactose operon repressor AFLV_RS14060 SM00382 ATPases associated with a variety of cellular activities AFLV_RS14130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFLV_RS14130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS14135 SM00226 Low molecular weight phosphatase family AFLV_RS14160 SM00937 AFLV_RS14160 AFLV_RS14175 SM00357 Cold shock protein domain AFLV_RS14175 SM00382 ATPases associated with a variety of cellular activities AFLV_RS14175 SM00959 Rho termination factor, N-terminal domain AFLV_RS14200 SM00448 cheY-homologous receiver domain AFLV_RS14255 SM00155 Phospholipase D. Active site motifs. AFLV_RS14260 SM00836 DALR anticodon binding domain AFLV_RS14260 SM01016 Arginyl tRNA synthetase N terminal dom AFLV_RS14275 SM00857 Resolvase, N terminal domain AFLV_RS14330 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFLV_RS14385 SM00642 Alpha-amylase domain AFLV_RS14400 SM00986 Uracil DNA glycosylase superfamily AFLV_RS14400 SM00987 UreE urease accessory protein, C-terminal domain AFLV_RS14450 SM01133 AFLV_RS14450 AFLV_RS14465 SM00640 Glycosyl hydrolases family 32 AFLV_RS14480 SM01061 CAT RNA binding domain AFLV_RS14495 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AFLV_RS14495 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AFLV_RS14500 SM00382 ATPases associated with a variety of cellular activities AFLV_RS14510 SM00062 Bacterial periplasmic substrate-binding proteins AFLV_RS14510 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFLV_RS14545 SM00382 ATPases associated with a variety of cellular activities AFLV_RS14580 SM00387 Histidine kinase-like ATPases AFLV_RS14585 SM00421 helix_turn_helix, Lux Regulon AFLV_RS14585 SM00448 cheY-homologous receiver domain AFLV_RS14590 SM00382 ATPases associated with a variety of cellular activities AFLV_RS14645 SM00382 ATPases associated with a variety of cellular activities AFLV_RS14675 SM00382 ATPases associated with a variety of cellular activities AFLV_RS14720 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFLV_RS14725 SM00849 Metallo-beta-lactamase superfamily AFLV_RS14740 SM00091 PAS domain AFLV_RS14740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFLV_RS14740 SM00387 Histidine kinase-like ATPases AFLV_RS14740 SM00388 His Kinase A (phosphoacceptor) domain AFLV_RS14745 SM00448 cheY-homologous receiver domain AFLV_RS14745 SM00862 Transcriptional regulatory protein, C terminal AFLV_RS14760 SM00788 Adenylosuccinate synthetase AFLV_RS14775 SM00267 diguanylate cyclase AFLV_RS14825 SM00470 ParB-like nuclease domain AFLV_RS14835 SM00470 ParB-like nuclease domain AFLV_RS14845 SM01228 AFLV_RS14845 AFLV_RS14855 SM00393 Putative single-stranded nucleic acids-binding domain AFLV_RS14855 SM01245 AFLV_RS14855 AFLV_RS14910 SM00421 helix_turn_helix, Lux Regulon