aq_001 SM00838 Elongation factor G C-terminus aq_001 SM00889 Elongation factor G, domain IV aq_008 SM01403 aq_008 aq_013 SM01382 aq_013 aq_013 SM01383 aq_013 aq_017 SM00322 K homology RNA-binding domain aq_024 SM00984 UDP binding domain aq_027 SM00052 Putative diguanylate phosphodiesterase aq_027 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) aq_027 SM00091 PAS domain aq_027 SM00267 diguanylate cyclase aq_030 SM00852 Probable molybdopterin binding domain aq_035 SM00267 diguanylate cyclase aq_061 SM00852 Probable molybdopterin binding domain aq_070 SM00662 RNA polymerases D aq_072 SM00363 S4 RNA-binding domain aq_072 SM01390 aq_072 aq_075a SM00316 Ribosomal protein S1-like RNA-binding domain aq_083 SM00052 Putative diguanylate phosphodiesterase aq_1008 SM00481 DNA polymerase alpha chain like domain aq_101 SM00116 Domain in cystathionine beta-synthase and other proteins. aq_101 SM01091 Transporter associated domain aq_1018 SM00530 Helix-turn-helix XRE-family like proteins aq_1026 SM00387 Histidine kinase-like ATPases aq_1026 SM00433 TopoisomeraseII aq_1055 SM00382 ATPases associated with a variety of cellular activities aq_1065 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain aq_1068 SM00840 aq_1068 aq_1076 SM00450 Rhodanese Homology Domain aq_1088 SM00028 Tetratricopeptide repeats aq_109 SM00938 Nitrogen regulatory protein P-II aq_1094 SM00382 ATPases associated with a variety of cellular activities aq_1097 SM00382 ATPases associated with a variety of cellular activities aq_1105 SM01211 aq_1105 aq_111 SM01230 aq_111 aq_1115 SM00091 PAS domain aq_1115 SM00387 Histidine kinase-like ATPases aq_1115 SM00388 His Kinase A (phosphoacceptor) domain aq_1117 SM00382 ATPases associated with a variety of cellular activities aq_1117 SM00448 cheY-homologous receiver domain aq_1134 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase aq_1143 SM01130 aq_1143 aq_1151 SM00052 Putative diguanylate phosphodiesterase aq_1151 SM00091 PAS domain aq_1151 SM00267 diguanylate cyclase aq_1159 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain aq_1159 SM00437 Bacterial DNA topoisomerase I DNA-binding domain aq_1159 SM00487 DEAD-like helicases superfamily aq_1159 SM00493 aq_1159 aq_116 SM00926 Molybdopterin oxidoreductase Fe4S4 domain aq_1172 SM00851 MGS-like domain aq_1178 SM01001 AIR carboxylase aq_1180 SM00996 S-adenosyl-L-homocysteine hydrolase aq_1180 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain aq_1185 SM00028 Tetratricopeptide repeats aq_1214 SM00382 ATPases associated with a variety of cellular activities aq_1214 SM00962 SRP54-type protein, GTPase domain aq_1222 SM00382 ATPases associated with a variety of cellular activities aq_1230 SM00481 DNA polymerase alpha chain like domain aq_1234 SM00926 Molybdopterin oxidoreductase Fe4S4 domain aq_1242 SM00463 Small MutS-related domain aq_1242 SM00533 DNA-binding domain of DNA mismatch repair MUTS family aq_1242 SM00534 ATPase domain of DNA mismatch repair MUTS family aq_1254 SM01323 aq_1254 aq_1263 SM00900 aq_1263 aq_1275 SM00316 Ribosomal protein S1-like RNA-binding domain aq_1290 SM00788 Adenylosuccinate synthetase aq_1292 SM00382 ATPases associated with a variety of cellular activities aq_1293 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain aq_1296 SM00382 ATPases associated with a variety of cellular activities aq_1296 SM01086 C-terminal, D2-small domain, of ClpB protein aq_1303a SM00357 Cold shock protein domain aq_1328 SM00487 DEAD-like helicases superfamily aq_1328 SM00490 helicase superfamily c-terminal domain aq_1337 SM00382 ATPases associated with a variety of cellular activities aq_1337 SM00994 ClpX C4-type zinc finger aq_1337 SM01086 C-terminal, D2-small domain, of ClpB protein aq_1355 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_1362 SM00829 Enoylreductase aq_1364 SM00841 Elongation factor P, C-terminal aq_1364 SM01185 aq_1364 aq_1387 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor aq_139 SM00904 Riboflavin kinase aq_1402 SM00028 Tetratricopeptide repeats aq_1409 SM00028 Tetratricopeptide repeats aq_1422 SM00481 DNA polymerase alpha chain like domain aq_1422 SM00483 DNA polymerase X family aq_1424 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_1442 SM00052 Putative diguanylate phosphodiesterase aq_1442 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) aq_1442 SM00091 PAS domain aq_1442 SM00267 diguanylate cyclase aq_1447 SM00950 aq_1447 aq_1450 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. aq_1455 SM00267 diguanylate cyclase aq_1464 SM00363 S4 RNA-binding domain aq_1470 SM00878 Biotin carboxylase C-terminal domain aq_1472 SM00382 ATPases associated with a variety of cellular activities aq_1473 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. aq_1474 SM00382 ATPases associated with a variety of cellular activities aq_1478 SM00493 aq_1478 aq_148 SM01133 aq_148 aq_1484a SM00411 bacterial (prokaryotic) histone like domain aq_1485 SM00316 Ribosomal protein S1-like RNA-binding domain aq_1493 SM00400 zinc finger aq_1493 SM00493 aq_1493 aq_1498 SM00732 Likely ribonuclease with RNase H fold. aq_1505 SM00306 Hint (Hedgehog/Intein) domain N-terminal region aq_1510 SM00346 helix_turn_helix isocitrate lyase regulation aq_1512 SM01329 aq_1512 aq_1517 SM00878 Biotin carboxylase C-terminal domain aq_1526 SM00382 ATPases associated with a variety of cellular activities aq_1528 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_1531 SM00382 ATPases associated with a variety of cellular activities aq_1546 SM00116 Domain in cystathionine beta-synthase and other proteins. aq_1554 SM01133 aq_1554 aq_1563 SM00382 ATPases associated with a variety of cellular activities aq_157 SM00935 Outer membrane protein (OmpH-like) aq_1578 SM01340 aq_1578 aq_1580 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family aq_1590 SM00562 aq_1590 aq_1595 SM00382 ATPases associated with a variety of cellular activities aq_1599 SM00450 Rhodanese Homology Domain aq_1622 SM00881 CoA binding domain aq_1628 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs aq_1628 SM00475 5'-3' exonuclease aq_1629 SM00518 AP endonuclease family 2 aq_1636 SM01400 aq_1636 aq_164 SM00382 ATPases associated with a variety of cellular activities aq_164 SM00448 cheY-homologous receiver domain aq_1653 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. aq_1654 SM01374 aq_1654 aq_1655 SM00989 aq_1655 aq_1658 SM01007 Class II Aldolase and Adducin N-terminal domain aq_1664 SM00878 Biotin carboxylase C-terminal domain aq_1667 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain aq_1672 SM00382 ATPases associated with a variety of cellular activities aq_1672 SM01086 C-terminal, D2-small domain, of ClpB protein aq_1681 SM00646 aq_1681 aq_1691 SM00232 JAB/MPN domain aq_1693 SM00986 Uracil DNA glycosylase superfamily aq_1693 SM00987 UreE urease accessory protein, C-terminal domain aq_1706 SM00014 Acid phosphatase homologues aq_1716 SM00822 aq_1716 aq_1717 SM00825 Beta-ketoacyl synthase aq_1717a SM00823 Phosphopantetheine attachment site aq_172 SM00278 Helix-hairpin-helix DNA-binding motif class 1 aq_172 SM00478 endonuclease III aq_172 SM00525 aq_172 aq_1720 SM00382 ATPases associated with a variety of cellular activities aq_1720 SM00962 SRP54-type protein, GTPase domain aq_1720 SM00963 SRP54-type protein, helical bundle domain aq_1725 SM00838 Elongation factor G C-terminus aq_1730 SM00873 B3/4 domain aq_1730 SM00874 tRNA synthetase B5 domain aq_1730 SM00896 Ferredoxin-fold anticodon binding domain aq_1732 SM00322 K homology RNA-binding domain aq_1732 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. aq_1735 SM00271 DnaJ molecular chaperone homology domain aq_1744 SM00855 Phosphoglycerate mutase family aq_1751 SM00363 S4 RNA-binding domain aq_1758 SM00363 S4 RNA-binding domain aq_175a SM01234 aq_175a aq_1765 SM00861 Transketolase, pyrimidine binding domain aq_1792 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. aq_1792 SM00382 ATPases associated with a variety of cellular activities aq_1798 SM00849 Metallo-beta-lactamase superfamily aq_1799 SM00450 Rhodanese Homology Domain aq_1816 SM00650 Ribosomal RNA adenine dimethylases aq_1822 SM00960 Roadblock/LC7 domain aq_1825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain aq_1827 SM01005 Alanine racemase, C-terminal domain aq_183 SM00028 Tetratricopeptide repeats aq_183a SM01409 aq_183a aq_1840 SM00937 aq_1840 aq_1844 SM00175 Rab subfamily of small GTPases aq_1847 SM00960 Roadblock/LC7 domain aq_1852 SM00155 Phospholipase D. Active site motifs. aq_1852 SM00382 ATPases associated with a variety of cellular activities aq_1855 SM00382 ATPases associated with a variety of cellular activities aq_1856 SM00487 DEAD-like helicases superfamily aq_1856 SM00490 helicase superfamily c-terminal domain aq_1866 SM00859 Semialdehyde dehydrogenase, NAD binding domain aq_1869 SM00881 CoA binding domain aq_1870 SM00957 SecA DEAD-like domain aq_1870 SM00958 SecA preprotein cross-linking domain aq_1879 SM00859 Semialdehyde dehydrogenase, NAD binding domain aq_1882 SM00480 DNA polymerase III beta subunit aq_1888 SM00881 CoA binding domain aq_1890 SM00967 RNA 2'-O ribose methyltransferase substrate binding aq_1896 SM00028 Tetratricopeptide repeats aq_1910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. aq_1912 SM00460 Transglutaminase/protease-like homologues aq_192 SM00382 ATPases associated with a variety of cellular activities aq_192 SM01086 C-terminal, D2-small domain, of ClpB protein aq_1931 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. aq_1931 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. aq_1933 SM00649 Ribosomal protein L11/L12 aq_1945 SM00663 RNA polymerase I subunit A N-terminus aq_1958 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_1963 SM00798 AICARFT/IMPCHase bienzyme aq_1963 SM00851 MGS-like domain aq_1964 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. aq_1967 SM00474 3'-5' exonuclease aq_1967 SM00482 DNA polymerase A domain aq_1979 SM01007 Class II Aldolase and Adducin N-terminal domain aq_1989 SM00028 Tetratricopeptide repeats aq_1990 SM00855 Phosphoglycerate mutase family aq_2023 SM00116 Domain in cystathionine beta-synthase and other proteins. aq_2023 SM01240 aq_2023 aq_2027 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. aq_2038 SM00382 ATPases associated with a variety of cellular activities aq_2046 SM00316 Ribosomal protein S1-like RNA-binding domain aq_2046 SM00357 Cold shock protein domain aq_2046 SM00955 aq_2046 aq_2049 SM00420 helix_turn_helix, Deoxyribose operon repressor aq_2053 SM00487 DEAD-like helicases superfamily aq_2053 SM00490 helicase superfamily c-terminal domain aq_2057 SM00382 ATPases associated with a variety of cellular activities aq_2057 SM00487 DEAD-like helicases superfamily aq_2058 SM00563 Phosphate acyltransferases aq_2071 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase aq_2086 SM00493 aq_2086 aq_2090 SM00917 LeuA allosteric (dimerisation) domain aq_2101 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain aq_2107 SM00100 Cyclic nucleotide-monophosphate binding domain aq_2107 SM00116 Domain in cystathionine beta-synthase and other proteins. aq_2108 SM00479 aq_2108 aq_2109 SM01004 Delta-aminolevulinic acid dehydratase aq_212 SM00530 Helix-turn-helix XRE-family like proteins aq_212 SM01116 aq_212 aq_2120 SM00116 Domain in cystathionine beta-synthase and other proteins. aq_2120 SM01091 Transporter associated domain aq_2122 SM00382 ATPases associated with a variety of cellular activities aq_2124 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_2126 SM00465 GIY-YIG type nucleases (URI domain) aq_213 SM00938 Nitrogen regulatory protein P-II aq_2135 SM00849 Metallo-beta-lactamase superfamily aq_2137 SM00382 ATPases associated with a variety of cellular activities aq_2150 SM00382 ATPases associated with a variety of cellular activities aq_2151 SM00382 ATPases associated with a variety of cellular activities aq_2158 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. aq_2160 SM00382 ATPases associated with a variety of cellular activities aq_217 SM00926 Molybdopterin oxidoreductase Fe4S4 domain aq_2174 SM00411 bacterial (prokaryotic) histone like domain aq_218 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. aq_218 SM00382 ATPases associated with a variety of cellular activities aq_2183 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_2197 SM00028 Tetratricopeptide repeats aq_2199 SM00883 Chaperonin 10 Kd subunit aq_221 SM00316 Ribosomal protein S1-like RNA-binding domain aq_221 SM00322 K homology RNA-binding domain aq_226a SM01387 aq_226a aq_227 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain aq_230 SM00382 ATPases associated with a variety of cellular activities aq_230 SM00448 cheY-homologous receiver domain aq_231 SM00387 Histidine kinase-like ATPases aq_231 SM00388 His Kinase A (phosphoacceptor) domain aq_240 SM00382 ATPases associated with a variety of cellular activities aq_242 SM00382 ATPases associated with a variety of cellular activities aq_242 SM00464 Found in ATP-dependent protease La (LON) aq_244 SM01329 aq_244 aq_251 SM00478 endonuclease III aq_259 SM00316 Ribosomal protein S1-like RNA-binding domain aq_259 SM00322 K homology RNA-binding domain aq_260a SM00704 CDGSH-type zinc finger. Function unknown. aq_265 SM00267 diguanylate cyclase aq_282 SM00478 endonuclease III aq_282 SM00525 aq_282 aq_284 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_291 SM00382 ATPases associated with a variety of cellular activities aq_297 SM00382 ATPases associated with a variety of cellular activities aq_308 SM00533 DNA-binding domain of DNA mismatch repair MUTS family aq_308 SM00534 ATPase domain of DNA mismatch repair MUTS family aq_316 SM00387 Histidine kinase-like ATPases aq_316 SM00388 His Kinase A (phosphoacceptor) domain aq_319 SM00448 cheY-homologous receiver domain aq_319 SM00862 Transcriptional regulatory protein, C terminal aq_322 SM00382 ATPases associated with a variety of cellular activities aq_322 SM00760 Bacterial dnaA protein helix-turn-helix domain aq_324 SM00470 ParB-like nuclease domain aq_340 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. aq_340 SM00091 PAS domain aq_341 SM00052 Putative diguanylate phosphodiesterase aq_345 SM00327 von Willebrand factor (vWF) type A domain aq_356 SM00917 LeuA allosteric (dimerisation) domain aq_358 SM00487 DEAD-like helicases superfamily aq_358 SM00491 aq_358 aq_367 SM00052 Putative diguanylate phosphodiesterase aq_367 SM00267 diguanylate cyclase aq_371 SM00487 DEAD-like helicases superfamily aq_371 SM00490 helicase superfamily c-terminal domain aq_403 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_410 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain aq_411 SM00116 Domain in cystathionine beta-synthase and other proteins. aq_413 SM00382 ATPases associated with a variety of cellular activities aq_417 SM00382 ATPases associated with a variety of cellular activities aq_429 SM00267 diguanylate cyclase aq_437 SM00926 Molybdopterin oxidoreductase Fe4S4 domain aq_437 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region aq_461 SM00845 GatB domain aq_474 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_477 SM00450 Rhodanese Homology Domain aq_484 SM01192 aq_484 aq_484 SM01193 aq_484 aq_490 SM00100 Cyclic nucleotide-monophosphate binding domain aq_490 SM00419 helix_turn_helix, cAMP Regulatory protein aq_496 SM00478 endonuclease III aq_496 SM00525 aq_496 aq_498 SM01350 aq_498 aq_499 SM00470 ParB-like nuclease domain aq_523 SM00842 Cell division protein FtsA aq_525 SM00864 Tubulin/FtsZ family, GTPase domain aq_525 SM00865 Tubulin/FtsZ family, C-terminal domain aq_533 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase aq_552 SM00382 ATPases associated with a variety of cellular activities aq_554 SM00363 S4 RNA-binding domain aq_563 SM00267 diguanylate cyclase aq_573 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region aq_575 SM00331 Sigma factor PP2C-like phosphatases aq_575 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain aq_576 SM00220 Serine/Threonine protein kinases, catalytic domain aq_597 SM00998 Adenylosuccinate lyase C-terminus aq_620 SM00382 ATPases associated with a variety of cellular activities aq_629 SM00968 SMC proteins Flexible Hinge Domain aq_632 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_633 SM00278 Helix-hairpin-helix DNA-binding motif class 1 aq_633 SM00292 breast cancer carboxy-terminal domain aq_633 SM00532 Ligase N family aq_635 SM00226 Low molecular weight phosphatase family aq_648 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_652 SM00257 Lysin motif aq_657 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain aq_657 SM00437 Bacterial DNA topoisomerase I DNA-binding domain aq_657 SM00493 aq_657 aq_676 SM01207 aq_676 aq_685 SM00226 Low molecular weight phosphatase family aq_686 SM00382 ATPases associated with a variety of cellular activities aq_689 SM00267 diguanylate cyclase aq_702 SM00422 helix_turn_helix, mercury resistance aq_703 SM00271 DnaJ molecular chaperone homology domain aq_710 SM00318 Staphylococcal nuclease homologues aq_722 SM00642 Alpha-amylase domain aq_724 SM00831 Cation transporter/ATPase, N-terminus aq_742 SM01209 aq_742 aq_742 SM01210 aq_742 aq_745 SM00382 ATPases associated with a variety of cellular activities aq_761 SM01228 aq_761 aq_764 SM00346 helix_turn_helix isocitrate lyase regulation aq_773 SM00363 S4 RNA-binding domain aq_789 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_797 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. aq_797 SM00245 tail specific protease aq_833 SM00858 aq_833 aq_844 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. aq_844 SM00954 Region found in RelA / SpoT proteins aq_849 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_854 SM00028 Tetratricopeptide repeats aq_854 SM00386 HAT (Half-A-TPR) repeats aq_862 SM00938 Nitrogen regulatory protein P-II aq_873 SM00357 Cold shock protein domain aq_873 SM00382 ATPases associated with a variety of cellular activities aq_873 SM00959 Rho termination factor, N-terminal domain aq_876 SM00937 aq_876 aq_881 SM00861 Transketolase, pyrimidine binding domain aq_886 SM00382 ATPases associated with a variety of cellular activities aq_886 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain aq_886 SM00437 Bacterial DNA topoisomerase I DNA-binding domain aq_886 SM00487 DEAD-like helicases superfamily aq_886 SM00493 aq_886 aq_892 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. aq_905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain aq_905 SM00388 His Kinase A (phosphoacceptor) domain aq_910 SM00382 ATPases associated with a variety of cellular activities aq_911 SM00244 prohibitin homologues aq_920 SM00028 Tetratricopeptide repeats aq_920 SM00382 ATPases associated with a variety of cellular activities aq_920 SM00962 SRP54-type protein, GTPase domain aq_920 SM00963 SRP54-type protein, helical bundle domain aq_923 SM00836 DALR anticodon binding domain aq_923 SM01016 Arginyl tRNA synthetase N terminal dom aq_928 SM00903 Flavin reductase like domain aq_932 SM00479 aq_932 aq_933 SM00331 Sigma factor PP2C-like phosphatases aq_933 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain aq_936 SM00382 ATPases associated with a variety of cellular activities aq_946 SM00358 Double-stranded RNA binding motif aq_946 SM00535 Ribonuclease III family aq_951 SM00830 Chorismate mutase type II aq_972 SM00028 Tetratricopeptide repeats aq_974 SM00849 Metallo-beta-lactamase superfamily aq_975 SM00729 Elongator protein 3, MiaB family, Radical SAM aq_975 SM00876 Biotin and Thiamin Synthesis associated domain aq_977 SM00933 aq_977 aq_980 SM00434 DNA Topoisomerase IV aq_987 SM00506 Appr-1"-p processing enzyme aq_990 SM00849 Metallo-beta-lactamase superfamily aq_993 SM00481 DNA polymerase alpha chain like domain aq_999 SM00563 Phosphate acyltransferases