locus-tag class description ARCH_RS00010 PF00308 Bacterial dnaA protein ARCH_RS00010 PF08299 Bacterial dnaA protein helix-turn-helix ARCH_RS00015 PF02767 DNA polymerase III beta subunit, central domain ARCH_RS00015 PF02768 DNA polymerase III beta subunit, C-terminal domain ARCH_RS00015 PF00712 DNA polymerase III beta subunit, N-terminal domain ARCH_RS00020 PF02463 RecF/RecN/SMC N terminal domain ARCH_RS00030 PF00204 DNA gyrase B ARCH_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus ARCH_RS00030 PF01751 Toprim domain ARCH_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS00035 PF03989 DNA gyrase C-terminal domain, beta-propeller ARCH_RS00035 PF00521 DNA gyrase/topoisomerase IV, subunit A ARCH_RS00040 PF12089 Transmembrane domain of unknown function (DUF3566) ARCH_RS00065 PF00884 Sulfatase ARCH_RS00070 PF01636 Phosphotransferase enzyme family ARCH_RS00075 PF17385 Lacto-N-biose phosphorylase central domain ARCH_RS00075 PF17386 Lacto-N-biose phosphorylase C-terminal domain ARCH_RS00075 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain ARCH_RS00080 PF00480 ROK family ARCH_RS00085 PF03616 Sodium/glutamate symporter ARCH_RS00105 PF02652 L-lactate permease ARCH_RS00110 PF02754 Cysteine-rich domain ARCH_RS00115 PF13183 4Fe-4S dicluster domain ARCH_RS00115 PF02589 LUD domain ARCH_RS00115 PF11870 Domain of unknown function (DUF3390) ARCH_RS00120 PF02589 LUD domain ARCH_RS00130 PF00746 LPXTG cell wall anchor motif ARCH_RS00130 PF16555 Gram-positive pilin subunit D1, N-terminal domain ARCH_RS00145 PF02028 BCCT, betaine/carnitine/choline family transporter ARCH_RS00165 PF16555 Gram-positive pilin subunit D1, N-terminal domain ARCH_RS00165 PF00746 LPXTG cell wall anchor motif ARCH_RS00185 PF00356 Bacterial regulatory proteins, lacI family ARCH_RS00190 PF00294 pfkB family carbohydrate kinase ARCH_RS00200 PF00107 Zinc-binding dehydrogenase ARCH_RS00200 PF08240 Alcohol dehydrogenase GroES-like domain ARCH_RS00205 PF00083 Sugar (and other) transporter ARCH_RS00215 PF01261 Xylose isomerase-like TIM barrel ARCH_RS00220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ARCH_RS00220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ARCH_RS00225 PF00923 Transaldolase/Fructose-6-phosphate aldolase ARCH_RS00235 PF00294 pfkB family carbohydrate kinase ARCH_RS00245 PF04962 KduI/IolB family ARCH_RS00250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ARCH_RS00250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ARCH_RS00250 PF00205 Thiamine pyrophosphate enzyme, central domain ARCH_RS00255 PF00171 Aldehyde dehydrogenase family ARCH_RS00260 PF07171 MlrC C-terminus ARCH_RS00260 PF07364 Metallopeptidase family M81 ARCH_RS00265 PF00480 ROK family ARCH_RS00270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ARCH_RS00275 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS00280 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS00280 PF12911 N-terminal TM domain of oligopeptide transport permease C ARCH_RS00285 PF00005 ABC transporter ARCH_RS00285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ARCH_RS00290 PF00480 ROK family ARCH_RS00310 PF03009 Glycerophosphoryl diester phosphodiesterase family ARCH_RS00335 PF00089 Trypsin ARCH_RS00350 PF16363 GDP-mannose 4,6 dehydratase ARCH_RS00355 PF00005 ABC transporter ARCH_RS00360 PF01061 ABC-2 type transporter ARCH_RS00395 PF00535 Glycosyl transferase family 2 ARCH_RS00415 PF01501 Glycosyl transferase family 8 ARCH_RS00415 PF00535 Glycosyl transferase family 2 ARCH_RS00420 PF04991 LicD family ARCH_RS00425 PF00892 EamA-like transporter family ARCH_RS00430 PF12804 MobA-like NTP transferase domain ARCH_RS00435 PF00534 Glycosyl transferases group 1 ARCH_RS00435 PF13439 Glycosyltransferase Family 4 ARCH_RS00445 PF04321 RmlD substrate binding domain ARCH_RS00455 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ARCH_RS00460 PF01527 Transposase ARCH_RS00475 PF00535 Glycosyl transferase family 2 ARCH_RS00480 PF00483 Nucleotidyl transferase ARCH_RS00485 PF00892 EamA-like transporter family ARCH_RS00495 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ARCH_RS00500 PF01694 Rhomboid family ARCH_RS00505 PF06781 Cell division protein CrgA ARCH_RS00510 PF04203 Sortase domain ARCH_RS00520 PF01548 Transposase ARCH_RS00520 PF02371 Transposase IS116/IS110/IS902 family ARCH_RS00525 PF00069 Protein kinase domain ARCH_RS00525 PF03793 PASTA domain ARCH_RS00530 PF00905 Penicillin binding protein transpeptidase domain ARCH_RS00535 PF01098 Cell cycle protein ARCH_RS00545 PF16697 Inner membrane component of T3SS, cytoplasmic domain ARCH_RS00550 PF00005 ABC transporter ARCH_RS00550 PF00498 FHA domain ARCH_RS00550 PF01061 ABC-2 type transporter ARCH_RS00560 PF03458 UPF0126 domain ARCH_RS00565 PF01661 Macro domain ARCH_RS00570 PF00075 RNase H ARCH_RS00575 PF00326 Prolyl oligopeptidase family ARCH_RS00575 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ARCH_RS00590 PF02664 S-Ribosylhomocysteinase (LuxS) ARCH_RS00600 PF07972 NrdI Flavodoxin like ARCH_RS00605 PF02867 Ribonucleotide reductase, barrel domain ARCH_RS00605 PF00317 Ribonucleotide reductase, all-alpha domain ARCH_RS00605 PF08343 Ribonucleotide reductase N-terminal ARCH_RS00610 PF00268 Ribonucleotide reductase, small chain ARCH_RS00615 PF01451 Low molecular weight phosphotyrosine protein phosphatase ARCH_RS00630 PF00005 ABC transporter ARCH_RS00635 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS00645 PF00270 DEAD/DEAH box helicase ARCH_RS00645 PF11898 Domain of unknown function (DUF3418) ARCH_RS00645 PF04408 Helicase associated domain (HA2) ARCH_RS00645 PF00271 Helicase conserved C-terminal domain ARCH_RS00645 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ARCH_RS00660 PF07702 UTRA domain ARCH_RS00660 PF00392 Bacterial regulatory proteins, gntR family ARCH_RS00665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ARCH_RS00665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ARCH_RS00665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ARCH_RS00665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ARCH_RS00675 PF00403 Heavy-metal-associated domain ARCH_RS00690 PF09335 SNARE associated Golgi protein ARCH_RS00695 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV ARCH_RS00710 PF01487 Type I 3-dehydroquinase ARCH_RS00715 PF00156 Phosphoribosyl transferase domain ARCH_RS00720 PF01297 Zinc-uptake complex component A periplasmic ARCH_RS00725 PF00005 ABC transporter ARCH_RS00730 PF00950 ABC 3 transport family ARCH_RS00735 PF00950 ABC 3 transport family ARCH_RS00740 PF18357 Diphteria toxin repressor SH3 domain ARCH_RS00740 PF02742 Iron dependent repressor, metal binding and dimerisation domain ARCH_RS00740 PF01325 Iron dependent repressor, N-terminal DNA binding domain ARCH_RS00745 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) ARCH_RS00750 PF00361 Proton-conducting membrane transporter ARCH_RS00750 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ARCH_RS00750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ARCH_RS00750 PF13244 Domain of unknown function (DUF4040) ARCH_RS00755 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ARCH_RS00760 PF00361 Proton-conducting membrane transporter ARCH_RS00770 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ARCH_RS00775 PF03334 Na+/H+ antiporter subunit ARCH_RS00795 PF00005 ABC transporter ARCH_RS00795 PF08402 TOBE domain ARCH_RS00800 PF02838 Glycosyl hydrolase family 20, domain 2 ARCH_RS00800 PF00728 Glycosyl hydrolase family 20, catalytic domain ARCH_RS00800 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain ARCH_RS00800 PF03173 Putative carbohydrate binding domain ARCH_RS00805 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS00810 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS00815 PF01547 Bacterial extracellular solute-binding protein ARCH_RS00825 PF07690 Major Facilitator Superfamily ARCH_RS00840 PF07883 Cupin domain ARCH_RS00845 PF00326 Prolyl oligopeptidase family ARCH_RS00845 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ARCH_RS00850 PF00012 Hsp70 protein ARCH_RS00855 PF01025 GrpE ARCH_RS00860 PF00226 DnaJ domain ARCH_RS00860 PF00684 DnaJ central domain ARCH_RS00860 PF01556 DnaJ C terminal domain ARCH_RS00865 PF13411 MerR HTH family regulatory protein ARCH_RS00870 PF00293 NUDIX domain ARCH_RS00885 PF04073 Aminoacyl-tRNA editing domain ARCH_RS00900 PF00749 tRNA synthetases class I (E and Q), catalytic domain ARCH_RS00910 PF00004 ATPase family associated with various cellular activities (AAA) ARCH_RS00910 PF07724 AAA domain (Cdc48 subfamily) ARCH_RS00910 PF10431 C-terminal, D2-small domain, of ClpB protein ARCH_RS00910 PF02861 Clp amino terminal domain, pathogenicity island component ARCH_RS00910 PF17871 AAA lid domain ARCH_RS00915 PF00324 Amino acid permease ARCH_RS00920 PF01658 Myo-inositol-1-phosphate synthase ARCH_RS00935 PF00106 short chain dehydrogenase ARCH_RS00945 PF00293 NUDIX domain ARCH_RS00975 PF01116 Fructose-bisphosphate aldolase class-II ARCH_RS00990 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS00995 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS01015 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ARCH_RS01015 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ARCH_RS01020 PF01259 SAICAR synthetase ARCH_RS01025 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ARCH_RS01025 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ARCH_RS01090 PF01641 SelR domain ARCH_RS01115 PF12849 PBP superfamily domain ARCH_RS01120 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS01125 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS01130 PF00005 ABC transporter ARCH_RS01135 PF01384 Phosphate transporter family ARCH_RS01145 PF01235 Sodium:alanine symporter family ARCH_RS01160 PF08768 Domain of unknown function (DUF1794) ARCH_RS01165 PF01571 Aminomethyltransferase folate-binding domain ARCH_RS01170 PF02580 D-Tyr-tRNA(Tyr) deacylase ARCH_RS01175 PF00004 ATPase family associated with various cellular activities (AAA) ARCH_RS01175 PF07724 AAA domain (Cdc48 subfamily) ARCH_RS01175 PF17871 AAA lid domain ARCH_RS01175 PF02861 Clp amino terminal domain, pathogenicity island component ARCH_RS01175 PF10431 C-terminal, D2-small domain, of ClpB protein ARCH_RS01200 PF01548 Transposase ARCH_RS01200 PF02371 Transposase IS116/IS110/IS902 family ARCH_RS01220 PF00291 Pyridoxal-phosphate dependent enzyme ARCH_RS01225 PF13726 Na+-H+ antiporter family ARCH_RS01225 PF03553 Na+/H+ antiporter family ARCH_RS01235 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ARCH_RS01235 PF02896 PEP-utilising enzyme, TIM barrel domain ARCH_RS01235 PF00391 PEP-utilising enzyme, mobile domain ARCH_RS01240 PF01757 Acyltransferase family ARCH_RS01270 PF00719 Inorganic pyrophosphatase ARCH_RS01275 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ARCH_RS01285 PF09179 TilS substrate binding domain ARCH_RS01285 PF01171 PP-loop family ARCH_RS01290 PF00004 ATPase family associated with various cellular activities (AAA) ARCH_RS01290 PF17862 AAA+ lid domain ARCH_RS01290 PF01434 Peptidase family M41 ARCH_RS01295 PF01227 GTP cyclohydrolase I ARCH_RS01300 PF00809 Pterin binding enzyme ARCH_RS01305 PF02152 Dihydroneopterin aldolase ARCH_RS01330 PF02569 Pantoate-beta-alanine ligase ARCH_RS01335 PF02261 Aspartate decarboxylase ARCH_RS01340 PF01336 OB-fold nucleic acid binding domain ARCH_RS01340 PF00152 tRNA synthetases class II (D, K and N) ARCH_RS01345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ARCH_RS01345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ARCH_RS01350 PF00230 Major intrinsic protein ARCH_RS01360 PF02754 Cysteine-rich domain ARCH_RS01360 PF13183 4Fe-4S dicluster domain ARCH_RS01365 PF00890 FAD binding domain ARCH_RS01370 PF01266 FAD dependent oxidoreductase ARCH_RS01370 PF04324 BFD-like [2Fe-2S] binding domain ARCH_RS01375 PF04198 Putative sugar-binding domain ARCH_RS01375 PF13936 Helix-turn-helix domain ARCH_RS01380 PF00633 Helix-hairpin-helix motif ARCH_RS01380 PF10576 Iron-sulfur binding domain of endonuclease III ARCH_RS01380 PF00730 HhH-GPD superfamily base excision DNA repair protein ARCH_RS01390 PF07690 Major Facilitator Superfamily ARCH_RS01395 PF00083 Sugar (and other) transporter ARCH_RS01400 PF02463 RecF/RecN/SMC N terminal domain ARCH_RS01415 PF06745 KaiC ARCH_RS01415 PF18073 Rubredoxin metal binding domain ARCH_RS01420 PF02254 TrkA-N domain ARCH_RS01420 PF02080 TrkA-C domain ARCH_RS01425 PF02386 Cation transport protein ARCH_RS01430 PF12728 Helix-turn-helix domain ARCH_RS01440 PF00300 Histidine phosphatase superfamily (branch 1) ARCH_RS01450 PF01040 UbiA prenyltransferase family ARCH_RS01455 PF13193 AMP-binding enzyme C-terminal domain ARCH_RS01455 PF00501 AMP-binding enzyme ARCH_RS01460 PF00378 Enoyl-CoA hydratase/isomerase ARCH_RS01465 PF03848 Tellurite resistance protein TehB ARCH_RS01470 PF13378 Enolase C-terminal domain-like ARCH_RS01470 PF18374 Enolase N-terminal domain-like ARCH_RS01475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ARCH_RS01475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ARCH_RS01485 PF13180 PDZ domain ARCH_RS01490 PF00425 chorismate binding enzyme ARCH_RS01495 PF01209 ubiE/COQ5 methyltransferase family ARCH_RS01500 PF01494 FAD binding domain ARCH_RS01505 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ARCH_RS01510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ARCH_RS01515 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ARCH_RS01520 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ARCH_RS01530 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ARCH_RS01530 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ARCH_RS01530 PF10531 SLBB domain ARCH_RS01535 PF00384 Molybdopterin oxidoreductase ARCH_RS01535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ARCH_RS01535 PF01568 Molydopterin dinucleotide binding domain ARCH_RS01535 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ARCH_RS01540 PF00146 NADH dehydrogenase ARCH_RS01545 PF12838 4Fe-4S dicluster domain ARCH_RS01550 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ARCH_RS01555 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ARCH_RS01560 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ARCH_RS01560 PF00361 Proton-conducting membrane transporter ARCH_RS01565 PF00361 Proton-conducting membrane transporter ARCH_RS01570 PF00361 Proton-conducting membrane transporter ARCH_RS01575 PF00348 Polyprenyl synthetase ARCH_RS01580 PF07516 SecA Wing and Scaffold domain ARCH_RS01580 PF01043 SecA preprotein cross-linking domain ARCH_RS01580 PF07517 SecA DEAD-like domain ARCH_RS01585 PF05958 tRNA (Uracil-5-)-methyltransferase ARCH_RS01585 PF01938 TRAM domain ARCH_RS01635 PF13476 AAA domain ARCH_RS01640 PF00149 Calcineurin-like phosphoesterase ARCH_RS01640 PF12320 Type 5 capsule protein repressor C-terminal domain ARCH_RS01670 PF03193 RsgA GTPase ARCH_RS01675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ARCH_RS01690 PF00480 ROK family ARCH_RS01695 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ARCH_RS01700 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ARCH_RS01705 PF01979 Amidohydrolase family ARCH_RS01710 PF04542 Sigma-70 region 2 ARCH_RS01710 PF08281 Sigma-70, region 4 ARCH_RS01760 PF16078 2-oxoglutarate dehydrogenase N-terminus ARCH_RS01760 PF00676 Dehydrogenase E1 component ARCH_RS01760 PF02779 Transketolase, pyrimidine binding domain ARCH_RS01760 PF16870 2-oxoglutarate dehydrogenase C-terminal ARCH_RS01760 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ARCH_RS01765 PF00571 CBS domain ARCH_RS01765 PF01595 Cyclin M transmembrane N-terminal domain ARCH_RS01765 PF03471 Transporter associated domain ARCH_RS01770 PF01595 Cyclin M transmembrane N-terminal domain ARCH_RS01770 PF00571 CBS domain ARCH_RS01780 PF03009 Glycerophosphoryl diester phosphodiesterase family ARCH_RS01790 PF05746 DALR anticodon binding domain ARCH_RS01790 PF03485 Arginyl tRNA synthetase N terminal domain ARCH_RS01790 PF00750 tRNA synthetases class I (R) ARCH_RS01805 PF07497 Rho termination factor, RNA-binding domain ARCH_RS01805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ARCH_RS01805 PF07498 Rho termination factor, N-terminal domain ARCH_RS01810 PF01197 Ribosomal protein L31 ARCH_RS01815 PF03462 PCRF domain ARCH_RS01815 PF00472 RF-1 domain ARCH_RS01820 PF17827 PrmC N-terminal domain ARCH_RS01825 PF01300 Telomere recombination ARCH_RS01830 PF00953 Glycosyl transferase family 4 ARCH_RS01840 PF00119 ATP synthase A chain ARCH_RS01845 PF00137 ATP synthase subunit C ARCH_RS01850 PF00430 ATP synthase B/B' CF(0) ARCH_RS01855 PF00213 ATP synthase delta (OSCP) subunit ARCH_RS01860 PF02874 ATP synthase alpha/beta family, beta-barrel domain ARCH_RS01860 PF00306 ATP synthase alpha/beta chain, C terminal domain ARCH_RS01860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ARCH_RS01865 PF00231 ATP synthase ARCH_RS01870 PF02874 ATP synthase alpha/beta family, beta-barrel domain ARCH_RS01870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ARCH_RS01875 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ARCH_RS01875 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ARCH_RS01885 PF01939 Endonuclease NucS ARCH_RS01915 PF00085 Thioredoxin ARCH_RS01920 PF00128 Alpha amylase, catalytic domain ARCH_RS01925 PF00356 Bacterial regulatory proteins, lacI family ARCH_RS01935 PF14785 Maltose transport system permease protein MalF P2 domain ARCH_RS01935 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS01940 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS01945 PF03358 NADPH-dependent FMN reductase ARCH_RS01950 PF00128 Alpha amylase, catalytic domain ARCH_RS01950 PF02806 Alpha amylase, C-terminal all-beta domain ARCH_RS01950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ARCH_RS01955 PF18085 Maltokinase N-terminal cap domain ARCH_RS01955 PF01636 Phosphotransferase enzyme family ARCH_RS01960 PF16657 Maltogenic Amylase, C-terminal domain ARCH_RS01960 PF00128 Alpha amylase, catalytic domain ARCH_RS01965 PF11896 Domain of unknown function (DUF3416) ARCH_RS01965 PF00128 Alpha amylase, catalytic domain ARCH_RS01975 PF00343 Carbohydrate phosphorylase ARCH_RS01980 PF00579 tRNA synthetases class I (W and Y) ARCH_RS01985 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ARCH_RS01985 PF00128 Alpha amylase, catalytic domain ARCH_RS01990 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ARCH_RS01990 PF09297 NADH pyrophosphatase zinc ribbon domain ARCH_RS01990 PF00293 NUDIX domain ARCH_RS01995 PF00570 HRDC domain ARCH_RS01995 PF13361 UvrD-like helicase C-terminal domain ARCH_RS01995 PF00580 UvrD/REP helicase N-terminal domain ARCH_RS02010 PF13180 PDZ domain ARCH_RS02010 PF05362 Lon protease (S16) C-terminal proteolytic domain ARCH_RS02020 PF03699 Uncharacterised protein family (UPF0182) ARCH_RS02030 PF00005 ABC transporter ARCH_RS02035 PF00392 Bacterial regulatory proteins, gntR family ARCH_RS02055 PF00005 ABC transporter ARCH_RS02065 PF12804 MobA-like NTP transferase domain ARCH_RS02075 PF00186 Dihydrofolate reductase ARCH_RS02080 PF00303 Thymidylate synthase ARCH_RS02090 PF07568 Histidine kinase ARCH_RS02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS02090 PF12282 Signal transduction histidine kinase ARCH_RS02095 PF02467 Transcription factor WhiB ARCH_RS02105 PF00005 ABC transporter ARCH_RS02110 PF00072 Response regulator receiver domain ARCH_RS02110 PF00196 Bacterial regulatory proteins, luxR family ARCH_RS02120 PF03120 NAD-dependent DNA ligase OB-fold domain ARCH_RS02120 PF12826 Helix-hairpin-helix motif ARCH_RS02120 PF01653 NAD-dependent DNA ligase adenylation domain ARCH_RS02120 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ARCH_RS02120 PF00533 BRCA1 C Terminus (BRCT) domain ARCH_RS02125 PF13396 Phospholipase_D-nuclease N-terminal ARCH_RS02125 PF13091 PLD-like domain ARCH_RS02130 PF02686 Glu-tRNAGln amidotransferase C subunit ARCH_RS02135 PF01425 Amidase ARCH_RS02140 PF02637 GatB domain ARCH_RS02140 PF02934 GatB/GatE catalytic domain ARCH_RS02145 PF03949 Malic enzyme, NAD binding domain ARCH_RS02145 PF00390 Malic enzyme, N-terminal domain ARCH_RS02170 PF06965 Na+/H+ antiporter 1 ARCH_RS02175 PF08241 Methyltransferase domain ARCH_RS02185 PF02080 TrkA-C domain ARCH_RS02185 PF06826 Predicted Permease Membrane Region ARCH_RS02190 PF10415 Fumarase C C-terminus ARCH_RS02190 PF00206 Lyase ARCH_RS02200 PF01228 Glycine radical ARCH_RS02200 PF02901 Pyruvate formate lyase-like ARCH_RS02205 PF01228 Glycine radical ARCH_RS02205 PF02901 Pyruvate formate lyase-like ARCH_RS02210 PF04055 Radical SAM superfamily ARCH_RS02215 PF01168 Alanine racemase, N-terminal domain ARCH_RS02220 PF00271 Helicase conserved C-terminal domain ARCH_RS02220 PF00270 DEAD/DEAH box helicase ARCH_RS02220 PF08148 DSHCT (NUC185) domain ARCH_RS02225 PF00356 Bacterial regulatory proteins, lacI family ARCH_RS02230 PF02614 Glucuronate isomerase ARCH_RS02235 PF00294 pfkB family carbohydrate kinase ARCH_RS02240 PF01081 KDPG and KHG aldolase ARCH_RS02245 PF03786 D-mannonate dehydratase (UxuA) ARCH_RS02250 PF01232 Mannitol dehydrogenase Rossmann domain ARCH_RS02250 PF08125 Mannitol dehydrogenase C-terminal domain ARCH_RS02270 PF00005 ABC transporter ARCH_RS02270 PF12704 MacB-like periplasmic core domain ARCH_RS02305 PF00929 Exonuclease ARCH_RS02320 PF00005 ABC transporter ARCH_RS02330 PF00005 ABC transporter ARCH_RS02330 PF12848 ABC transporter ARCH_RS02400 PF02446 4-alpha-glucanotransferase ARCH_RS02415 PF01226 Formate/nitrite transporter ARCH_RS02420 PF01433 Peptidase family M1 domain ARCH_RS02420 PF11838 ERAP1-like C-terminal domain ARCH_RS02425 PF01431 Peptidase family M13 ARCH_RS02425 PF05649 Peptidase family M13 ARCH_RS02430 PF02502 Ribose/Galactose Isomerase ARCH_RS02435 PF00132 Bacterial transferase hexapeptide (six repeats) ARCH_RS02440 PF00291 Pyridoxal-phosphate dependent enzyme ARCH_RS02445 PF09186 Domain of unknown function (DUF1949) ARCH_RS02445 PF01205 Uncharacterized protein family UPF0029 ARCH_RS02450 PF01783 Ribosomal L32p protein family ARCH_RS02465 PF00950 ABC 3 transport family ARCH_RS02470 PF00005 ABC transporter ARCH_RS02485 PF02554 Carbon starvation protein CstA ARCH_RS02485 PF13722 5TM C-terminal transporter carbon starvation CstA ARCH_RS02495 PF00248 Aldo/keto reductase family ARCH_RS02505 PF01022 Bacterial regulatory protein, arsR family ARCH_RS02510 PF01712 Deoxynucleoside kinase ARCH_RS02525 PF13416 Bacterial extracellular solute-binding protein ARCH_RS02530 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS02535 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS02575 PF07669 Eco57I restriction-modification methylase ARCH_RS02580 PF04851 Type III restriction enzyme, res subunit ARCH_RS02640 PF00438 S-adenosylmethionine synthetase, N-terminal domain ARCH_RS02640 PF02772 S-adenosylmethionine synthetase, central domain ARCH_RS02640 PF02773 S-adenosylmethionine synthetase, C-terminal domain ARCH_RS02650 PF01555 DNA methylase ARCH_RS02660 PF03354 Phage Terminase ARCH_RS02670 PF04860 Phage portal protein ARCH_RS02680 PF00196 Bacterial regulatory proteins, luxR family ARCH_RS02680 PF00072 Response regulator receiver domain ARCH_RS02695 PF00196 Bacterial regulatory proteins, luxR family ARCH_RS02695 PF00072 Response regulator receiver domain ARCH_RS02710 PF00005 ABC transporter ARCH_RS02735 PF00253 Ribosomal protein S14p/S29e ARCH_RS02740 PF00830 Ribosomal L28 family ARCH_RS02745 PF00471 Ribosomal protein L33 ARCH_RS02760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ARCH_RS02760 PF05698 Bacterial trigger factor protein (TF) C-terminus ARCH_RS02760 PF05697 Bacterial trigger factor protein (TF) ARCH_RS02765 PF00574 Clp protease ARCH_RS02770 PF00574 Clp protease ARCH_RS02775 PF07724 AAA domain (Cdc48 subfamily) ARCH_RS02775 PF10431 C-terminal, D2-small domain, of ClpB protein ARCH_RS02775 PF06689 ClpX C4-type zinc finger ARCH_RS02780 PF00356 Bacterial regulatory proteins, lacI family ARCH_RS02785 PF07690 Major Facilitator Superfamily ARCH_RS02790 PF00459 Inositol monophosphatase family ARCH_RS02795 PF00501 AMP-binding enzyme ARCH_RS02805 PF08264 Anticodon-binding domain of tRNA ARCH_RS02805 PF00133 tRNA synthetases class I (I, L, M and V) ARCH_RS02815 PF00664 ABC transporter transmembrane region ARCH_RS02815 PF00005 ABC transporter ARCH_RS02820 PF00664 ABC transporter transmembrane region ARCH_RS02820 PF00005 ABC transporter ARCH_RS02825 PF08264 Anticodon-binding domain of tRNA ARCH_RS02825 PF00133 tRNA synthetases class I (I, L, M and V) ARCH_RS02830 PF02875 Mur ligase family, glutamate ligase domain ARCH_RS02830 PF08245 Mur ligase middle domain ARCH_RS02835 PF00334 Nucleoside diphosphate kinase ARCH_RS02840 PF02734 DAK2 domain ARCH_RS02845 PF02463 RecF/RecN/SMC N terminal domain ARCH_RS02845 PF06470 SMC proteins Flexible Hinge Domain ARCH_RS02855 PF00448 SRP54-type protein, GTPase domain ARCH_RS02855 PF02881 SRP54-type protein, helical bundle domain ARCH_RS02860 PF00448 SRP54-type protein, GTPase domain ARCH_RS02860 PF02881 SRP54-type protein, helical bundle domain ARCH_RS02860 PF02978 Signal peptide binding domain ARCH_RS02865 PF01979 Amidohydrolase family ARCH_RS02885 PF16916 Dimerisation domain of Zinc Transporter ARCH_RS02885 PF01545 Cation efflux family ARCH_RS02890 PF00886 Ribosomal protein S16 ARCH_RS02900 PF05239 PRC-barrel domain ARCH_RS02900 PF01782 RimM N-terminal domain ARCH_RS02905 PF01746 tRNA (Guanine-1)-methyltransferase ARCH_RS02910 PF01245 Ribosomal protein L19 ARCH_RS02915 PF10502 Signal peptidase, peptidase S26 ARCH_RS02920 PF01351 Ribonuclease HII ARCH_RS02925 PF10611 Protein of unknown function (DUF2469) ARCH_RS02930 PF02021 Uncharacterised protein family UPF0102 ARCH_RS02935 PF13335 Magnesium chelatase, subunit ChlI C-terminal ARCH_RS02935 PF01078 Magnesium chelatase, subunit ChlI ARCH_RS02940 PF17782 DprA winged helix domain ARCH_RS02940 PF02481 DNA recombination-mediator protein A ARCH_RS02945 PF02899 Phage integrase, N-terminal SAM-like domain ARCH_RS02945 PF00589 Phage integrase family ARCH_RS02950 PF04151 Bacterial pre-peptidase C-terminal domain ARCH_RS02950 PF00082 Subtilase family ARCH_RS02960 PF01551 Peptidase family M23 ARCH_RS02965 PF00318 Ribosomal protein S2 ARCH_RS02970 PF00889 Elongation factor TS ARCH_RS02980 PF00766 Electron transfer flavoprotein FAD-binding domain ARCH_RS02980 PF01012 Electron transfer flavoprotein domain ARCH_RS02985 PF01494 FAD binding domain ARCH_RS02995 PF00324 Amino acid permease ARCH_RS03000 PF07690 Major Facilitator Superfamily ARCH_RS03045 PF01479 S4 domain ARCH_RS03050 PF00696 Amino acid kinase family ARCH_RS03055 PF01765 Ribosome recycling factor ARCH_RS03065 PF04055 Radical SAM superfamily ARCH_RS03075 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ARCH_RS03075 PF13288 DXP reductoisomerase C-terminal domain ARCH_RS03075 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ARCH_RS03080 PF02163 Peptidase family M50 ARCH_RS03080 PF17820 PDZ domain ARCH_RS03085 PF04551 GcpE protein ARCH_RS03090 PF00583 Acetyltransferase (GNAT) family ARCH_RS03095 PF03129 Anticodon binding domain ARCH_RS03095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ARCH_RS03095 PF04073 Aminoacyl-tRNA editing domain ARCH_RS03105 PF02576 RimP N-terminal domain ARCH_RS03105 PF17384 RimP C-terminal SH3 domain ARCH_RS03110 PF08529 NusA N-terminal domain ARCH_RS03110 PF13184 NusA-like KH domain ARCH_RS03120 PF11987 Translation-initiation factor 2 ARCH_RS03120 PF00009 Elongation factor Tu GTP binding domain ARCH_RS03120 PF04760 Translation initiation factor IF-2, N-terminal region ARCH_RS03125 PF02033 Ribosome-binding factor A ARCH_RS03130 PF09142 tRNA Pseudouridine synthase II, C terminal ARCH_RS03130 PF01509 TruB family pseudouridylate synthase (N terminal domain) ARCH_RS03130 PF16198 tRNA pseudouridylate synthase B C-terminal domain ARCH_RS03175 PF00005 ABC transporter ARCH_RS03175 PF02687 FtsX-like permease family ARCH_RS03175 PF12704 MacB-like periplasmic core domain ARCH_RS03180 PF12704 MacB-like periplasmic core domain ARCH_RS03180 PF02687 FtsX-like permease family ARCH_RS03180 PF00005 ABC transporter ARCH_RS03190 PF06574 FAD synthetase ARCH_RS03190 PF01687 Riboflavin kinase ARCH_RS03210 PF01032 FecCD transport family ARCH_RS03215 PF00005 ABC transporter ARCH_RS03220 PF00312 Ribosomal protein S15 ARCH_RS03225 PF00013 KH domain ARCH_RS03225 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ARCH_RS03225 PF01138 3' exoribonuclease family, domain 1 ARCH_RS03225 PF00575 S1 RNA binding domain ARCH_RS03245 PF12706 Beta-lactamase superfamily domain ARCH_RS03245 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ARCH_RS03245 PF17770 Ribonuclease J C-terminal domain ARCH_RS03250 PF00005 ABC transporter ARCH_RS03250 PF08402 TOBE domain ARCH_RS03255 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS03265 PF00486 Transcriptional regulatory protein, C terminal ARCH_RS03265 PF00072 Response regulator receiver domain ARCH_RS03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS03270 PF00512 His Kinase A (phospho-acceptor) domain ARCH_RS03270 PF00989 PAS fold ARCH_RS03270 PF16736 Single Cache-like ARCH_RS03275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ARCH_RS03280 PF17854 FtsK alpha domain ARCH_RS03280 PF09397 Ftsk gamma domain ARCH_RS03280 PF01580 FtsK/SpoIIIE family ARCH_RS03285 PF01066 CDP-alcohol phosphatidyltransferase ARCH_RS03290 PF00994 Probable molybdopterin binding domain ARCH_RS03290 PF02464 Competence-damaged protein ARCH_RS03290 PF18146 Damage-inducible protein CinA KH domain ARCH_RS03300 PF00154 recA bacterial DNA recombination protein ARCH_RS03305 PF02631 RecX family ARCH_RS03310 PF00919 Uncharacterized protein family UPF0004 ARCH_RS03310 PF01938 TRAM domain ARCH_RS03310 PF04055 Radical SAM superfamily ARCH_RS03320 PF08240 Alcohol dehydrogenase GroES-like domain ARCH_RS03320 PF00107 Zinc-binding dehydrogenase ARCH_RS03325 PF01926 50S ribosome-binding GTPase ARCH_RS03325 PF13167 GTP-binding GTPase N-terminal ARCH_RS03325 PF16360 GTP-binding GTPase Middle Region ARCH_RS03330 PF13307 Helicase C-terminal domain ARCH_RS03335 PF01726 LexA DNA binding domain ARCH_RS03335 PF00717 Peptidase S24-like ARCH_RS03345 PF03477 ATP cone domain ARCH_RS03350 PF00501 AMP-binding enzyme ARCH_RS03350 PF13193 AMP-binding enzyme C-terminal domain ARCH_RS03370 PF11798 IMS family HHH motif ARCH_RS03370 PF00817 impB/mucB/samB family ARCH_RS03370 PF11799 impB/mucB/samB family C-terminal domain ARCH_RS03380 PF02381 MraZ protein, putative antitoxin-like ARCH_RS03385 PF01795 MraW methylase family ARCH_RS03395 PF03717 Penicillin-binding Protein dimerisation domain ARCH_RS03395 PF00905 Penicillin binding protein transpeptidase domain ARCH_RS03400 PF08245 Mur ligase middle domain ARCH_RS03400 PF02875 Mur ligase family, glutamate ligase domain ARCH_RS03400 PF01225 Mur ligase family, catalytic domain ARCH_RS03405 PF02875 Mur ligase family, glutamate ligase domain ARCH_RS03405 PF01225 Mur ligase family, catalytic domain ARCH_RS03405 PF08245 Mur ligase middle domain ARCH_RS03410 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ARCH_RS03410 PF00953 Glycosyl transferase family 4 ARCH_RS03415 PF02875 Mur ligase family, glutamate ligase domain ARCH_RS03415 PF08245 Mur ligase middle domain ARCH_RS03420 PF01098 Cell cycle protein ARCH_RS03425 PF04101 Glycosyltransferase family 28 C-terminal domain ARCH_RS03425 PF03033 Glycosyltransferase family 28 N-terminal domain ARCH_RS03430 PF02875 Mur ligase family, glutamate ligase domain ARCH_RS03430 PF01225 Mur ligase family, catalytic domain ARCH_RS03430 PF08245 Mur ligase middle domain ARCH_RS03440 PF00091 Tubulin/FtsZ family, GTPase domain ARCH_RS03440 PF12327 FtsZ family, C-terminal domain ARCH_RS03445 PF02578 Multi-copper polyphenol oxidoreductase laccase ARCH_RS03450 PF04472 Cell division protein SepF ARCH_RS03460 PF05103 DivIVA protein ARCH_RS03465 PF01252 Signal peptidase (SPase) II ARCH_RS03470 PF00849 RNA pseudouridylate synthase ARCH_RS03480 PF07733 Bacterial DNA polymerase III alpha NTPase domain ARCH_RS03480 PF14579 Helix-hairpin-helix motif ARCH_RS03480 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ARCH_RS03480 PF02811 PHP domain ARCH_RS03495 PF01475 Ferric uptake regulator family ARCH_RS03500 PF00950 ABC 3 transport family ARCH_RS03505 PF00005 ABC transporter ARCH_RS03510 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment ARCH_RS03510 PF01297 Zinc-uptake complex component A periplasmic ARCH_RS03515 PF03129 Anticodon binding domain ARCH_RS03515 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ARCH_RS03525 PF01207 Dihydrouridine synthase (Dus) ARCH_RS03535 PF13286 Phosphohydrolase-associated domain ARCH_RS03535 PF01966 HD domain ARCH_RS03540 PF13407 Periplasmic binding protein domain ARCH_RS03540 PF18610 Periplasmic binding protein domain ARCH_RS03545 PF00005 ABC transporter ARCH_RS03550 PF02653 Branched-chain amino acid transport system / permease component ARCH_RS03560 PF10410 DnaB-helicase binding domain of primase ARCH_RS03560 PF13662 Toprim domain ARCH_RS03560 PF08278 DNA primase DnaG DnaB-binding ARCH_RS03560 PF08275 DNA primase catalytic core, N-terminal domain ARCH_RS03560 PF01807 CHC2 zinc finger ARCH_RS03605 PF01066 CDP-alcohol phosphatidyltransferase ARCH_RS03630 PF01300 Telomere recombination ARCH_RS03635 PF13419 Haloacid dehalogenase-like hydrolase ARCH_RS03640 PF00664 ABC transporter transmembrane region ARCH_RS03640 PF00005 ABC transporter ARCH_RS03645 PF00005 ABC transporter ARCH_RS03645 PF00664 ABC transporter transmembrane region ARCH_RS03650 PF00456 Transketolase, thiamine diphosphate binding domain ARCH_RS03650 PF17831 Pyruvate dehydrogenase E1 component middle domain ARCH_RS03675 PF01784 NIF3 (NGG1p interacting factor 3) ARCH_RS03685 PF03883 Peroxide stress protein YaaA ARCH_RS03690 PF00480 ROK family ARCH_RS03695 PF00557 Metallopeptidase family M24 ARCH_RS03700 PF02548 Ketopantoate hydroxymethyltransferase ARCH_RS03705 PF00120 Glutamine synthetase, catalytic domain ARCH_RS03705 PF03951 Glutamine synthetase, beta-Grasp domain ARCH_RS03710 PF03710 Glutamate-ammonia ligase adenylyltransferase ARCH_RS03710 PF08335 GlnD PII-uridylyltransferase ARCH_RS03720 PF00120 Glutamine synthetase, catalytic domain ARCH_RS03720 PF03951 Glutamine synthetase, beta-Grasp domain ARCH_RS03735 PF02817 e3 binding domain ARCH_RS03735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ARCH_RS03735 PF00364 Biotin-requiring enzyme ARCH_RS03740 PF07992 Pyridine nucleotide-disulphide oxidoreductase ARCH_RS03740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ARCH_RS03750 PF00005 ABC transporter ARCH_RS03755 PF01032 FecCD transport family ARCH_RS03760 PF01032 FecCD transport family ARCH_RS03765 PF01497 Periplasmic binding protein ARCH_RS03770 PF02789 Cytosol aminopeptidase family, N-terminal domain ARCH_RS03770 PF00883 Cytosol aminopeptidase family, catalytic domain ARCH_RS03780 PF01546 Peptidase family M20/M25/M40 ARCH_RS03780 PF07687 Peptidase dimerisation domain ARCH_RS03790 PF01521 Iron-sulphur cluster biosynthesis ARCH_RS03800 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ARCH_RS03800 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ARCH_RS03810 PF00929 Exonuclease ARCH_RS03810 PF01541 GIY-YIG catalytic domain ARCH_RS03820 PF00365 Phosphofructokinase ARCH_RS03825 PF01474 Class-II DAHP synthetase family ARCH_RS03830 PF00069 Protein kinase domain ARCH_RS03830 PF03793 PASTA domain ARCH_RS03835 PF05257 CHAP domain ARCH_RS03835 PF01476 LysM domain ARCH_RS03845 PF00348 Polyprenyl synthetase ARCH_RS03860 PF00140 Sigma-70 factor, region 1.2 ARCH_RS03860 PF04542 Sigma-70 region 2 ARCH_RS03860 PF04539 Sigma-70 region 3 ARCH_RS03860 PF04545 Sigma-70, region 4 ARCH_RS03865 PF00929 Exonuclease ARCH_RS03875 PF01751 Toprim domain ARCH_RS03875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS03875 PF00986 DNA gyrase B subunit, carboxyl terminus ARCH_RS03875 PF00204 DNA gyrase B ARCH_RS03890 PF00521 DNA gyrase/topoisomerase IV, subunit A ARCH_RS03890 PF03989 DNA gyrase C-terminal domain, beta-propeller ARCH_RS03905 PF00265 Thymidine kinase ARCH_RS03935 PF02080 TrkA-C domain ARCH_RS03935 PF02254 TrkA-N domain ARCH_RS03940 PF02080 TrkA-C domain ARCH_RS03940 PF02254 TrkA-N domain ARCH_RS03955 PF01555 DNA methylase ARCH_RS03955 PF18273 Type III R-M EcoP15I C-terminal domain ARCH_RS03960 PF08774 VRR-NUC domain ARCH_RS03960 PF04851 Type III restriction enzyme, res subunit ARCH_RS03965 PF00271 Helicase conserved C-terminal domain ARCH_RS03965 PF00176 SNF2 family N-terminal domain ARCH_RS03975 PF13333 Integrase core domain ARCH_RS03975 PF13276 HTH-like domain ARCH_RS03975 PF00665 Integrase core domain ARCH_RS03980 PF01527 Transposase ARCH_RS03995 PF00005 ABC transporter ARCH_RS04005 PF00731 AIR carboxylase ARCH_RS04010 PF01527 Transposase ARCH_RS04025 PF00330 Aconitase family (aconitate hydratase) ARCH_RS04025 PF00694 Aconitase C-terminal domain ARCH_RS04030 PF02779 Transketolase, pyrimidine binding domain ARCH_RS04030 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ARCH_RS04030 PF02780 Transketolase, C-terminal domain ARCH_RS04045 PF00128 Alpha amylase, catalytic domain ARCH_RS04045 PF11941 Domain of unknown function (DUF3459) ARCH_RS04050 PF00128 Alpha amylase, catalytic domain ARCH_RS04055 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ARCH_RS04055 PF00128 Alpha amylase, catalytic domain ARCH_RS04095 PF01925 Sulfite exporter TauE/SafE ARCH_RS04105 PF02421 Ferrous iron transport protein B ARCH_RS04105 PF07670 Nucleoside recognition ARCH_RS04105 PF07664 Ferrous iron transport protein B C terminus ARCH_RS04105 PF17910 FeoB cytosolic helical domain ARCH_RS04120 PF01297 Zinc-uptake complex component A periplasmic ARCH_RS04125 PF00005 ABC transporter ARCH_RS04130 PF00950 ABC 3 transport family ARCH_RS04135 PF03315 Serine dehydratase beta chain ARCH_RS04135 PF03313 Serine dehydratase alpha chain ARCH_RS04140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ARCH_RS04140 PF03129 Anticodon binding domain ARCH_RS04140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ARCH_RS04145 PF01066 CDP-alcohol phosphatidyltransferase ARCH_RS04155 PF13439 Glycosyltransferase Family 4 ARCH_RS04170 PF00293 NUDIX domain ARCH_RS04175 PF01709 Transcriptional regulator ARCH_RS04180 PF02075 Crossover junction endodeoxyribonuclease RuvC ARCH_RS04185 PF07499 RuvA, C-terminal domain ARCH_RS04185 PF01330 RuvA N terminal domain ARCH_RS04190 PF05496 Holliday junction DNA helicase RuvB P-loop domain ARCH_RS04190 PF05491 RuvB C-terminal winged helix domain ARCH_RS04190 PF17864 RuvB AAA lid domain ARCH_RS04200 PF02355 Protein export membrane protein ARCH_RS04200 PF07549 SecD/SecF GG Motif ARCH_RS04205 PF02355 Protein export membrane protein ARCH_RS04205 PF07549 SecD/SecF GG Motif ARCH_RS04210 PF00156 Phosphoribosyl transferase domain ARCH_RS04215 PF13291 ACT domain ARCH_RS04215 PF04607 Region found in RelA / SpoT proteins ARCH_RS04215 PF02824 TGS domain ARCH_RS04220 PF03993 Domain of Unknown Function (DUF349) ARCH_RS04225 PF00753 Metallo-beta-lactamase superfamily ARCH_RS04230 PF03129 Anticodon binding domain ARCH_RS04230 PF13393 Histidyl-tRNA synthetase ARCH_RS04240 PF07650 KH domain ARCH_RS04240 PF01926 50S ribosome-binding GTPase ARCH_RS04245 PF00270 DEAD/DEAH box helicase ARCH_RS04245 PF00271 Helicase conserved C-terminal domain ARCH_RS04245 PF03880 DbpA RNA binding domain ARCH_RS04255 PF01336 OB-fold nucleic acid binding domain ARCH_RS04255 PF02938 GAD domain ARCH_RS04255 PF00152 tRNA synthetases class II (D, K and N) ARCH_RS04260 PF03734 L,D-transpeptidase catalytic domain ARCH_RS04260 PF17964 Bacterial Ig domain ARCH_RS04265 PF03176 MMPL family ARCH_RS04270 PF16193 AAA C-terminal domain ARCH_RS04270 PF00004 ATPase family associated with various cellular activities (AAA) ARCH_RS04270 PF12002 MgsA AAA+ ATPase C terminal ARCH_RS04275 PF00163 Ribosomal protein S4/S9 N-terminal domain ARCH_RS04275 PF01479 S4 domain ARCH_RS04280 PF02272 DHHA1 domain ARCH_RS04280 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ARCH_RS04280 PF01411 tRNA synthetases class II (A) ARCH_RS04285 PF03652 Holliday junction resolvase ARCH_RS04305 PF01264 Chorismate synthase ARCH_RS04310 PF01761 3-dehydroquinate synthase ARCH_RS04310 PF01202 Shikimate kinase ARCH_RS04320 PF09285 Elongation factor P, C-terminal ARCH_RS04320 PF08207 Elongation factor P (EF-P) KOW-like domain ARCH_RS04320 PF01132 Elongation factor P (EF-P) OB domain ARCH_RS04325 PF01029 NusB family ARCH_RS04330 PF00625 Guanylate kinase ARCH_RS04335 PF00625 Guanylate kinase ARCH_RS04340 PF01192 RNA polymerase Rpb6 ARCH_RS04345 PF04127 DNA / pantothenate metabolism flavoprotein ARCH_RS04345 PF02441 Flavoprotein ARCH_RS04350 PF02773 S-adenosylmethionine synthetase, C-terminal domain ARCH_RS04350 PF02772 S-adenosylmethionine synthetase, central domain ARCH_RS04350 PF00438 S-adenosylmethionine synthetase, N-terminal domain ARCH_RS04355 PF17764 3′ DNA-binding domain (3′BD) ARCH_RS04360 PF02911 Formyl transferase, C-terminal domain ARCH_RS04360 PF00551 Formyl transferase ARCH_RS04365 PF01189 16S rRNA methyltransferase RsmB/F ARCH_RS04365 PF01029 NusB family ARCH_RS04370 PF00834 Ribulose-phosphate 3 epimerase family ARCH_RS04375 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS04380 PF09084 NMT1/THI5 like ARCH_RS04400 PF00270 DEAD/DEAH box helicase ARCH_RS04400 PF00271 Helicase conserved C-terminal domain ARCH_RS04400 PF08148 DSHCT (NUC185) domain ARCH_RS04405 PF00535 Glycosyl transferase family 2 ARCH_RS04405 PF00795 Carbon-nitrogen hydrolase ARCH_RS04410 PF13397 RNA polymerase-binding protein ARCH_RS04415 PF13411 MerR HTH family regulatory protein ARCH_RS04425 PF00498 FHA domain ARCH_RS04430 PF11838 ERAP1-like C-terminal domain ARCH_RS04430 PF01433 Peptidase family M1 domain ARCH_RS04440 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ARCH_RS04440 PF01926 50S ribosome-binding GTPase ARCH_RS04445 PF02224 Cytidylate kinase ARCH_RS04450 PF01479 S4 domain ARCH_RS04450 PF00849 RNA pseudouridylate synthase ARCH_RS04455 PF04079 Segregation and condensation complex subunit ScpB ARCH_RS04460 PF02616 Segregation and condensation protein ScpA ARCH_RS04465 PF13614 AAA domain ARCH_RS04470 PF02899 Phage integrase, N-terminal SAM-like domain ARCH_RS04470 PF00589 Phage integrase family ARCH_RS04475 PF00456 Transketolase, thiamine diphosphate binding domain ARCH_RS04475 PF02780 Transketolase, C-terminal domain ARCH_RS04475 PF02779 Transketolase, pyrimidine binding domain ARCH_RS04480 PF03840 Preprotein translocase SecG subunit ARCH_RS04485 PF00121 Triosephosphate isomerase ARCH_RS04490 PF00162 Phosphoglycerate kinase ARCH_RS04495 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ARCH_RS04495 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ARCH_RS04500 PF10298 WhiA N-terminal LAGLIDADG-like domain ARCH_RS04500 PF14527 WhiA LAGLIDADG-like domain ARCH_RS04500 PF02650 WhiA C-terminal HTH domain ARCH_RS04505 PF01933 Uncharacterised protein family UPF0052 ARCH_RS04510 PF03668 P-loop ATPase protein family ARCH_RS04520 PF00005 ABC transporter ARCH_RS04520 PF17760 UvrA interaction domain ARCH_RS04520 PF17755 UvrA DNA-binding domain ARCH_RS04530 PF03741 Integral membrane protein TerC family ARCH_RS04535 PF00271 Helicase conserved C-terminal domain ARCH_RS04535 PF02151 UvrB/uvrC motif ARCH_RS04535 PF04851 Type III restriction enzyme, res subunit ARCH_RS04535 PF12344 Ultra-violet resistance protein B ARCH_RS04535 PF17757 UvrB interaction domain ARCH_RS04545 PF00575 S1 RNA binding domain ARCH_RS04550 PF08241 Methyltransferase domain ARCH_RS04555 PF00476 DNA polymerase family A ARCH_RS04555 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ARCH_RS04555 PF01367 5'-3' exonuclease, C-terminal SAM fold ARCH_RS04565 PF03861 ANTAR domain ARCH_RS04565 PF00072 Response regulator receiver domain ARCH_RS04575 PF02887 Pyruvate kinase, alpha/beta domain ARCH_RS04575 PF00224 Pyruvate kinase, barrel domain ARCH_RS04580 PF01790 Prolipoprotein diacylglyceryl transferase ARCH_RS04590 PF03136 Pup-ligase protein ARCH_RS04595 PF05639 Pup-like protein ARCH_RS04600 PF03136 Pup-ligase protein ARCH_RS04605 PF17758 Proteasomal ATPase OB N-terminal domain ARCH_RS04605 PF16450 Proteasomal ATPase OB C-terminal domain ARCH_RS04605 PF00004 ATPase family associated with various cellular activities (AAA) ARCH_RS04610 PF08704 tRNA methyltransferase complex GCD14 subunit ARCH_RS04615 PF12705 PD-(D/E)XK nuclease superfamily ARCH_RS04620 PF13419 Haloacid dehalogenase-like hydrolase ARCH_RS04625 PF02673 Bacitracin resistance protein BacA ARCH_RS04630 PF00248 Aldo/keto reductase family ARCH_RS04645 PF08501 Shikimate dehydrogenase substrate binding domain ARCH_RS04645 PF01488 Shikimate / quinate 5-dehydrogenase ARCH_RS04645 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ARCH_RS04650 PF16320 Ribosomal protein L7/L12 dimerisation domain ARCH_RS04650 PF00542 Ribosomal protein L7/L12 C-terminal domain ARCH_RS04680 PF14579 Helix-hairpin-helix motif ARCH_RS04680 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ARCH_RS04680 PF02811 PHP domain ARCH_RS04680 PF07733 Bacterial DNA polymerase III alpha NTPase domain ARCH_RS04685 PF00588 SpoU rRNA Methylase family ARCH_RS04695 PF00588 SpoU rRNA Methylase family ARCH_RS04700 PF01145 SPFH domain / Band 7 family ARCH_RS04710 PF00005 ABC transporter ARCH_RS04715 PF13439 Glycosyltransferase Family 4 ARCH_RS04715 PF00534 Glycosyl transferases group 1 ARCH_RS04720 PF00483 Nucleotidyl transferase ARCH_RS04725 PF16326 ABC transporter C-terminal domain ARCH_RS04725 PF12848 ABC transporter ARCH_RS04725 PF00005 ABC transporter ARCH_RS04730 PF04228 Putative neutral zinc metallopeptidase ARCH_RS04735 PF01883 Iron-sulfur cluster assembly protein ARCH_RS04740 PF01592 NifU-like N terminal domain ARCH_RS04745 PF00266 Aminotransferase class-V ARCH_RS04750 PF00005 ABC transporter ARCH_RS04755 PF00355 Rieske [2Fe-2S] domain ARCH_RS04760 PF01458 Uncharacterized protein family (UPF0051) ARCH_RS04765 PF01458 Uncharacterized protein family (UPF0051) ARCH_RS04775 PF00293 NUDIX domain ARCH_RS04780 PF03023 Lipid II flippase MurJ ARCH_RS04790 PF11382 Copper transport outer membrane protein, MctB ARCH_RS04800 PF02463 RecF/RecN/SMC N terminal domain ARCH_RS04805 PF01513 ATP-NAD kinase ARCH_RS04810 PF01479 S4 domain ARCH_RS04810 PF01728 FtsJ-like methyltransferase ARCH_RS04820 PF18407 GCN5-related N-acetyltransferase like domain ARCH_RS04820 PF13344 Haloacid dehalogenase-like hydrolase ARCH_RS04845 PF00579 tRNA synthetases class I (W and Y) ARCH_RS04855 PF00881 Nitroreductase family ARCH_RS04860 PF01316 Arginine repressor, DNA binding domain ARCH_RS04860 PF02863 Arginine repressor, C-terminal domain ARCH_RS04865 PF00202 Aminotransferase class-III ARCH_RS04870 PF00106 short chain dehydrogenase ARCH_RS04875 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ARCH_RS04875 PF01588 Putative tRNA binding domain ARCH_RS04875 PF03147 Ferredoxin-fold anticodon binding domain ARCH_RS04875 PF03484 tRNA synthetase B5 domain ARCH_RS04875 PF03483 B3/4 domain ARCH_RS04880 PF01409 tRNA synthetases class II core domain (F) ARCH_RS04880 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ARCH_RS04890 PF00701 Dihydrodipicolinate synthetase family ARCH_RS04895 PF00005 ABC transporter ARCH_RS04895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ARCH_RS04900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ARCH_RS04900 PF00005 ABC transporter ARCH_RS04905 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS04910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ARCH_RS04915 PF00588 SpoU rRNA Methylase family ARCH_RS04915 PF08032 RNA 2'-O ribose methyltransferase substrate binding ARCH_RS04920 PF00453 Ribosomal protein L20 ARCH_RS04925 PF01632 Ribosomal protein L35 ARCH_RS04930 PF00707 Translation initiation factor IF-3, C-terminal domain ARCH_RS04930 PF05198 Translation initiation factor IF-3, N-terminal domain ARCH_RS04950 PF01255 Putative undecaprenyl diphosphate synthase ARCH_RS04955 PF02565 Recombination protein O C terminal ARCH_RS04955 PF11967 Recombination protein O N terminal ARCH_RS04960 PF01926 50S ribosome-binding GTPase ARCH_RS04960 PF07650 KH domain ARCH_RS04965 PF03471 Transporter associated domain ARCH_RS04965 PF00571 CBS domain ARCH_RS04965 PF01595 Cyclin M transmembrane N-terminal domain ARCH_RS04970 PF02130 Uncharacterized protein family UPF0054 ARCH_RS04975 PF02562 PhoH-like protein ARCH_RS04980 PF04452 RNA methyltransferase ARCH_RS04985 PF01556 DnaJ C terminal domain ARCH_RS04985 PF00684 DnaJ central domain ARCH_RS04985 PF00226 DnaJ domain ARCH_RS04990 PF08220 DeoR-like helix-turn-helix domain ARCH_RS04990 PF01628 HrcA protein C terminal domain ARCH_RS04995 PF01850 PIN domain ARCH_RS05020 PF04055 Radical SAM superfamily ARCH_RS05025 PF02390 Putative methyltransferase ARCH_RS05030 PF06421 GTP-binding protein LepA C-terminus ARCH_RS05030 PF00009 Elongation factor Tu GTP binding domain ARCH_RS05030 PF00679 Elongation factor G C-terminus ARCH_RS05050 PF01649 Ribosomal protein S20 ARCH_RS05055 PF02233 NAD(P) transhydrogenase beta subunit ARCH_RS05060 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ARCH_RS05060 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ARCH_RS05060 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ARCH_RS05075 PF10531 SLBB domain ARCH_RS05080 PF05872 Bacterial protein of unknown function (DUF853) ARCH_RS05090 PF08264 Anticodon-binding domain of tRNA ARCH_RS05090 PF13603 Leucyl-tRNA synthetase, Domain 2 ARCH_RS05090 PF09334 tRNA synthetases class I (M) ARCH_RS05095 PF01230 HIT domain ARCH_RS05110 PF01594 AI-2E family transporter ARCH_RS05115 PF01048 Phosphorylase superfamily ARCH_RS05120 PF00005 ABC transporter ARCH_RS05120 PF09383 NIL domain ARCH_RS05125 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS05130 PF03180 NLPA lipoprotein ARCH_RS05135 PF00474 Sodium:solute symporter family ARCH_RS05140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ARCH_RS05145 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ARCH_RS05150 PF03480 Bacterial extracellular solute-binding protein, family 7 ARCH_RS05155 PF01470 Pyroglutamyl peptidase ARCH_RS05170 PF12697 Alpha/beta hydrolase family ARCH_RS05175 PF16995 Transmembrane region of lysyl-tRNA synthetase ARCH_RS05175 PF00152 tRNA synthetases class II (D, K and N) ARCH_RS05175 PF09924 Uncharacterised conserved protein (DUF2156) ARCH_RS05175 PF01336 OB-fold nucleic acid binding domain ARCH_RS05180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ARCH_RS05180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ARCH_RS05185 PF00156 Phosphoribosyl transferase domain ARCH_RS05190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ARCH_RS05195 PF01180 Dihydroorotate dehydrogenase ARCH_RS05200 PF00970 Oxidoreductase FAD-binding domain ARCH_RS05200 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B ARCH_RS05205 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ARCH_RS05205 PF02142 MGS-like domain ARCH_RS05205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ARCH_RS05210 PF01979 Amidohydrolase family ARCH_RS05220 PF03553 Na+/H+ antiporter family ARCH_RS05225 PF01197 Ribosomal protein L31 ARCH_RS05230 PF07859 alpha/beta hydrolase fold ARCH_RS05235 PF07690 Major Facilitator Superfamily ARCH_RS05245 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ARCH_RS05250 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ARCH_RS05255 PF09335 SNARE associated Golgi protein ARCH_RS05260 PF00916 Sulfate permease family ARCH_RS05260 PF01740 STAS domain ARCH_RS05265 PF02806 Alpha amylase, C-terminal all-beta domain ARCH_RS05265 PF00128 Alpha amylase, catalytic domain ARCH_RS05265 PF03714 Bacterial pullanase-associated domain ARCH_RS05285 PF02371 Transposase IS116/IS110/IS902 family ARCH_RS05285 PF01548 Transposase ARCH_RS05325 PF01420 Type I restriction modification DNA specificity domain ARCH_RS05330 PF02384 N-6 DNA Methylase ARCH_RS05330 PF12161 HsdM N-terminal domain ARCH_RS05335 PF08463 EcoEI R protein C-terminal ARCH_RS05335 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) ARCH_RS05335 PF00271 Helicase conserved C-terminal domain ARCH_RS05335 PF04851 Type III restriction enzyme, res subunit ARCH_RS05355 PF13847 Methyltransferase domain ARCH_RS05375 PF17440 Thiol-activated cytolysin beta sandwich domain ARCH_RS05375 PF01289 Thiol-activated cytolysin ARCH_RS05385 PF00300 Histidine phosphatase superfamily (branch 1) ARCH_RS05400 PF01467 Cytidylyltransferase-like ARCH_RS05405 PF00085 Thioredoxin ARCH_RS05415 PF01926 50S ribosome-binding GTPase ARCH_RS05415 PF09269 Domain of unknown function (DUF1967) ARCH_RS05415 PF01018 GTP1/OBG ARCH_RS05420 PF01016 Ribosomal L27 protein ARCH_RS05425 PF00829 Ribosomal prokaryotic L21 protein ARCH_RS05430 PF10150 Ribonuclease E/G family ARCH_RS05435 PF01654 Cytochrome bd terminal oxidase subunit I ARCH_RS05440 PF02322 Cytochrome bd terminal oxidase subunit II ARCH_RS05445 PF00664 ABC transporter transmembrane region ARCH_RS05445 PF00005 ABC transporter ARCH_RS05450 PF00005 ABC transporter ARCH_RS05450 PF00664 ABC transporter transmembrane region ARCH_RS05455 PF07730 Histidine kinase ARCH_RS05455 PF13492 GAF domain ARCH_RS05455 PF13185 GAF domain ARCH_RS05455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS05460 PF00196 Bacterial regulatory proteins, luxR family ARCH_RS05460 PF00072 Response regulator receiver domain ARCH_RS05465 PF06827 Zinc finger found in FPG and IleRS ARCH_RS05465 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ARCH_RS05465 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ARCH_RS05470 PF14622 Ribonuclease-III-like ARCH_RS05470 PF00035 Double-stranded RNA binding motif ARCH_RS05475 PF02620 Large ribosomal RNA subunit accumulation protein YceD ARCH_RS05485 PF01467 Cytidylyltransferase-like ARCH_RS05495 PF00270 DEAD/DEAH box helicase ARCH_RS05495 PF00271 Helicase conserved C-terminal domain ARCH_RS05495 PF17191 RecG wedge domain ARCH_RS05500 PF00830 Ribosomal L28 family ARCH_RS05505 PF00005 ABC transporter ARCH_RS05510 PF01032 FecCD transport family ARCH_RS05515 PF01032 FecCD transport family ARCH_RS05525 PF00586 AIR synthase related protein, N-terminal domain ARCH_RS05525 PF02769 AIR synthase related protein, C-terminal domain ARCH_RS05530 PF07478 D-ala D-ala ligase C-terminus ARCH_RS05530 PF01820 D-ala D-ala ligase N-terminus ARCH_RS05535 PF01553 Acyltransferase ARCH_RS05540 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ARCH_RS05550 PF13439 Glycosyltransferase Family 4 ARCH_RS05550 PF00534 Glycosyl transferases group 1 ARCH_RS05555 PF01432 Peptidase family M3 ARCH_RS05585 PF00749 tRNA synthetases class I (E and Q), catalytic domain ARCH_RS05600 PF01910 Thiamine-binding protein ARCH_RS05615 PF00578 AhpC/TSA family ARCH_RS05630 PF01725 Ham1 family ARCH_RS05635 PF01138 3' exoribonuclease family, domain 1 ARCH_RS05635 PF03725 3' exoribonuclease family, domain 2 ARCH_RS05640 PF02661 Fic/DOC family ARCH_RS05640 PF13784 Fic/DOC family N-terminal ARCH_RS05645 PF12706 Beta-lactamase superfamily domain ARCH_RS05650 PF01177 Asp/Glu/Hydantoin racemase ARCH_RS05660 PF02617 ATP-dependent Clp protease adaptor protein ClpS ARCH_RS05665 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ARCH_RS05665 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ARCH_RS05670 PF04851 Type III restriction enzyme, res subunit ARCH_RS05680 PF00216 Bacterial DNA-binding protein ARCH_RS05685 PF06826 Predicted Permease Membrane Region ARCH_RS05685 PF02080 TrkA-C domain ARCH_RS05690 PF00756 Putative esterase ARCH_RS05695 PF00381 PTS HPr component phosphorylation site ARCH_RS05695 PF00391 PEP-utilising enzyme, mobile domain ARCH_RS05695 PF05524 PEP-utilising enzyme, N-terminal ARCH_RS05695 PF03610 PTS system fructose IIA component ARCH_RS05700 PF02733 Dak1 domain ARCH_RS05705 PF01594 AI-2E family transporter ARCH_RS05710 PF02540 NAD synthase ARCH_RS05720 PF00005 ABC transporter ARCH_RS05720 PF08402 TOBE domain ARCH_RS05730 PF07690 Major Facilitator Superfamily ARCH_RS05735 PF00486 Transcriptional regulatory protein, C terminal ARCH_RS05735 PF00072 Response regulator receiver domain ARCH_RS05740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS05745 PF00762 Ferrochelatase ARCH_RS05760 PF02016 LD-carboxypeptidase N-terminal domain ARCH_RS05760 PF17676 LD-carboxypeptidase C-terminal domain ARCH_RS05770 PF04545 Sigma-70, region 4 ARCH_RS05770 PF04542 Sigma-70 region 2 ARCH_RS05775 PF01174 SNO glutamine amidotransferase family ARCH_RS05780 PF01680 SOR/SNZ family ARCH_RS05785 PF01966 HD domain ARCH_RS05790 PF00950 ABC 3 transport family ARCH_RS05795 PF00005 ABC transporter ARCH_RS05800 PF01297 Zinc-uptake complex component A periplasmic ARCH_RS05825 PF00005 ABC transporter ARCH_RS05835 PF00005 ABC transporter ARCH_RS05840 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS05845 PF00497 Bacterial extracellular solute-binding proteins, family 3 ARCH_RS05855 PF05525 Branched-chain amino acid transport protein ARCH_RS05860 PF05525 Branched-chain amino acid transport protein ARCH_RS05865 PF05525 Branched-chain amino acid transport protein ARCH_RS05870 PF13673 Acetyltransferase (GNAT) domain ARCH_RS05870 PF13302 Acetyltransferase (GNAT) domain ARCH_RS05870 PF03352 Methyladenine glycosylase ARCH_RS05870 PF00117 Glutamine amidotransferase class-I ARCH_RS05870 PF00958 GMP synthase C terminal domain ARCH_RS05875 PF02308 MgtC family ARCH_RS05895 PF00288 GHMP kinases N terminal domain ARCH_RS05895 PF10509 Galactokinase galactose-binding signature ARCH_RS05895 PF08544 GHMP kinases C terminal ARCH_RS05910 PF16363 GDP-mannose 4,6 dehydratase ARCH_RS05915 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ARCH_RS05915 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ARCH_RS05920 PF07992 Pyridine nucleotide-disulphide oxidoreductase ARCH_RS05935 PF00764 Arginosuccinate synthase ARCH_RS05940 PF14698 Argininosuccinate lyase C-terminal ARCH_RS05940 PF00206 Lyase ARCH_RS05950 PF10397 Adenylosuccinate lyase C-terminus ARCH_RS05950 PF00206 Lyase ARCH_RS05955 PF00709 Adenylosuccinate synthetase ARCH_RS05960 PF00571 CBS domain ARCH_RS05960 PF00478 IMP dehydrogenase / GMP reductase domain ARCH_RS05965 PF00440 Bacterial regulatory proteins, tetR family ARCH_RS05970 PF00005 ABC transporter ARCH_RS05975 PF00005 ABC transporter ARCH_RS05975 PF04954 Siderophore-interacting protein ARCH_RS05975 PF00664 ABC transporter transmembrane region ARCH_RS05975 PF08021 Siderophore-interacting FAD-binding domain ARCH_RS05980 PF00005 ABC transporter ARCH_RS06000 PF13411 MerR HTH family regulatory protein ARCH_RS06000 PF07739 TipAS antibiotic-recognition domain ARCH_RS06025 PF03577 Peptidase family C69 ARCH_RS06035 PF01527 Transposase ARCH_RS06085 PF13333 Integrase core domain ARCH_RS06085 PF00665 Integrase core domain ARCH_RS06085 PF13276 HTH-like domain ARCH_RS06115 PF02796 Helix-turn-helix domain of resolvase ARCH_RS06115 PF00239 Resolvase, N terminal domain ARCH_RS06120 PF00005 ABC transporter ARCH_RS06125 PF13344 Haloacid dehalogenase-like hydrolase ARCH_RS06130 PF01668 SmpB protein ARCH_RS06135 PF01551 Peptidase family M23 ARCH_RS06140 PF18075 FtsX extracellular domain ARCH_RS06145 PF00005 ABC transporter ARCH_RS06150 PF00472 RF-1 domain ARCH_RS06150 PF03462 PCRF domain ARCH_RS06185 PF00437 Type II/IV secretion system protein ARCH_RS06195 PF13361 UvrD-like helicase C-terminal domain ARCH_RS06195 PF00580 UvrD/REP helicase N-terminal domain ARCH_RS06205 PF05661 Protein of unknown function (DUF808) ARCH_RS06215 PF00270 DEAD/DEAH box helicase ARCH_RS06215 PF00271 Helicase conserved C-terminal domain ARCH_RS06220 PF01914 MarC family integral membrane protein ARCH_RS06230 PF05195 Aminopeptidase P, N-terminal domain ARCH_RS06230 PF00557 Metallopeptidase family M24 ARCH_RS06245 PF01883 Iron-sulfur cluster assembly protein ARCH_RS06245 PF10609 NUBPL iron-transfer P-loop NTPase ARCH_RS06250 PF01596 O-methyltransferase ARCH_RS06255 PF00902 Sec-independent protein translocase protein (TatC) ARCH_RS06260 PF02416 mttA/Hcf106 family ARCH_RS06270 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS06275 PF01967 MoaC family ARCH_RS06280 PF03454 MoeA C-terminal region (domain IV) ARCH_RS06280 PF03453 MoeA N-terminal region (domain I and II) ARCH_RS06280 PF00994 Probable molybdopterin binding domain ARCH_RS06285 PF00899 ThiF family ARCH_RS06285 PF00581 Rhodanese-like domain ARCH_RS06290 PF00994 Probable molybdopterin binding domain ARCH_RS06300 PF06463 Molybdenum Cofactor Synthesis C ARCH_RS06300 PF04055 Radical SAM superfamily ARCH_RS06320 PF13247 4Fe-4S dicluster domain ARCH_RS06320 PF12800 4Fe-4S binding domain ARCH_RS06325 PF01568 Molydopterin dinucleotide binding domain ARCH_RS06325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ARCH_RS06325 PF00384 Molybdopterin oxidoreductase ARCH_RS06330 PF00440 Bacterial regulatory proteins, tetR family ARCH_RS06355 PF01048 Phosphorylase superfamily ARCH_RS06360 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ARCH_RS06360 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ARCH_RS06360 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ARCH_RS06360 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ARCH_RS06365 PF01791 DeoC/LacD family aldolase ARCH_RS06375 PF00591 Glycosyl transferase family, a/b domain ARCH_RS06375 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ARCH_RS06375 PF02885 Glycosyl transferase family, helical bundle domain ARCH_RS06380 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ARCH_RS06385 PF02653 Branched-chain amino acid transport system / permease component ARCH_RS06390 PF02653 Branched-chain amino acid transport system / permease component ARCH_RS06395 PF00005 ABC transporter ARCH_RS06400 PF02608 ABC transporter substrate-binding protein PnrA-like ARCH_RS06405 PF01050 Mannose-6-phosphate isomerase ARCH_RS06405 PF00483 Nucleotidyl transferase ARCH_RS06420 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ARCH_RS06420 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ARCH_RS06425 PF00464 Serine hydroxymethyltransferase ARCH_RS06430 PF00551 Formyl transferase ARCH_RS06435 PF08543 Phosphomethylpyrimidine kinase ARCH_RS06435 PF03070 TENA/THI-4/PQQC family ARCH_RS06435 PF02581 Thiamine monophosphate synthase ARCH_RS06440 PF02581 Thiamine monophosphate synthase ARCH_RS06445 PF02110 Hydroxyethylthiazole kinase family ARCH_RS06450 PF12464 Maltose acetyltransferase ARCH_RS06450 PF14602 Hexapeptide repeat of succinyl-transferase ARCH_RS06455 PF00196 Bacterial regulatory proteins, luxR family ARCH_RS06455 PF00072 Response regulator receiver domain ARCH_RS06470 PF02810 SEC-C motif ARCH_RS06475 PF00056 lactate/malate dehydrogenase, NAD binding domain ARCH_RS06475 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ARCH_RS06485 PF00342 Phosphoglucose isomerase ARCH_RS06490 PF03714 Bacterial pullanase-associated domain ARCH_RS06490 PF00128 Alpha amylase, catalytic domain ARCH_RS06490 PF02806 Alpha amylase, C-terminal all-beta domain ARCH_RS06495 PF00365 Phosphofructokinase ARCH_RS06500 PF02837 Glycosyl hydrolases family 2, sugar binding domain ARCH_RS06500 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ARCH_RS06500 PF16355 Domain of unknown function (DUF4982) ARCH_RS06500 PF00703 Glycosyl hydrolases family 2 ARCH_RS06500 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 ARCH_RS06510 PF02629 CoA binding domain ARCH_RS06510 PF00549 CoA-ligase ARCH_RS06515 PF00549 CoA-ligase ARCH_RS06515 PF08442 ATP-grasp domain ARCH_RS06525 PF00580 UvrD/REP helicase N-terminal domain ARCH_RS06525 PF13361 UvrD-like helicase C-terminal domain ARCH_RS06535 PF03591 AzlC protein ARCH_RS06570 PF00117 Glutamine amidotransferase class-I ARCH_RS06570 PF00958 GMP synthase C terminal domain ARCH_RS06570 PF02540 NAD synthase ARCH_RS06580 PF00953 Glycosyl transferase family 4 ARCH_RS06580 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ARCH_RS06600 PF00849 RNA pseudouridylate synthase ARCH_RS06600 PF01479 S4 domain ARCH_RS06605 PF01515 Phosphate acetyl/butaryl transferase ARCH_RS06605 PF07085 DRTGG domain ARCH_RS06610 PF00871 Acetokinase family ARCH_RS06625 PF10415 Fumarase C C-terminus ARCH_RS06625 PF00206 Lyase ARCH_RS06630 PF00478 IMP dehydrogenase / GMP reductase domain ARCH_RS06640 PF07992 Pyridine nucleotide-disulphide oxidoreductase ARCH_RS06640 PF13192 Thioredoxin domain ARCH_RS06645 PF00578 AhpC/TSA family ARCH_RS06645 PF10417 C-terminal domain of 1-Cys peroxiredoxin ARCH_RS06660 PF00478 IMP dehydrogenase / GMP reductase domain ARCH_RS06660 PF00571 CBS domain ARCH_RS06665 PF02467 Transcription factor WhiB ARCH_RS06670 PF00166 Chaperonin 10 Kd subunit ARCH_RS06680 PF00814 Glycoprotease family ARCH_RS06685 PF13183 4Fe-4S dicluster domain ARCH_RS06685 PF13085 2Fe-2S iron-sulfur cluster binding domain ARCH_RS06690 PF02910 Fumarate reductase flavoprotein C-term ARCH_RS06690 PF00890 FAD binding domain ARCH_RS06705 PF00814 Glycoprotease family ARCH_RS06715 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ARCH_RS06720 PF00842 Alanine racemase, C-terminal domain ARCH_RS06720 PF01168 Alanine racemase, N-terminal domain ARCH_RS06725 PF01256 Carbohydrate kinase ARCH_RS06730 PF01380 SIS domain ARCH_RS06735 PF00485 Phosphoribulokinase / Uridine kinase family ARCH_RS06740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ARCH_RS06740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ARCH_RS06740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ARCH_RS06740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ARCH_RS06745 PF00380 Ribosomal protein S9/S16 ARCH_RS06750 PF00572 Ribosomal protein L13 ARCH_RS06755 PF01416 tRNA pseudouridine synthase ARCH_RS06765 PF01196 Ribosomal protein L17 ARCH_RS06770 PF01000 RNA polymerase Rpb3/RpoA insert domain ARCH_RS06770 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ARCH_RS06770 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ARCH_RS06775 PF00411 Ribosomal protein S11 ARCH_RS06780 PF00416 Ribosomal protein S13/S18 ARCH_RS06790 PF01176 Translation initiation factor 1A / IF-1 ARCH_RS06795 PF01494 FAD binding domain ARCH_RS06800 PF00766 Electron transfer flavoprotein FAD-binding domain ARCH_RS06800 PF01012 Electron transfer flavoprotein domain ARCH_RS06815 PF00753 Metallo-beta-lactamase superfamily ARCH_RS06820 PF00083 Sugar (and other) transporter ARCH_RS06825 PF01575 MaoC like domain ARCH_RS06830 PF13193 AMP-binding enzyme C-terminal domain ARCH_RS06830 PF00501 AMP-binding enzyme ARCH_RS06835 PF02515 CoA-transferase family III ARCH_RS06840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ARCH_RS06840 PF02770 Acyl-CoA dehydrogenase, middle domain ARCH_RS06840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ARCH_RS06845 PF07859 alpha/beta hydrolase fold ARCH_RS06855 PF00557 Metallopeptidase family M24 ARCH_RS06865 PF00344 SecY translocase ARCH_RS06870 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ARCH_RS06875 PF00327 Ribosomal protein L30p/L7e ARCH_RS06880 PF00333 Ribosomal protein S5, N-terminal domain ARCH_RS06880 PF03719 Ribosomal protein S5, C-terminal domain ARCH_RS06885 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ARCH_RS06890 PF00347 Ribosomal protein L6 ARCH_RS06895 PF00410 Ribosomal protein S8 ARCH_RS06900 PF00281 Ribosomal protein L5 ARCH_RS06900 PF00673 ribosomal L5P family C-terminus ARCH_RS06905 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ARCH_RS06910 PF00238 Ribosomal protein L14p/L23e ARCH_RS06915 PF00366 Ribosomal protein S17 ARCH_RS06920 PF00831 Ribosomal L29 protein ARCH_RS06925 PF00252 Ribosomal protein L16p/L10e ARCH_RS06930 PF00189 Ribosomal protein S3, C-terminal domain ARCH_RS06930 PF07650 KH domain ARCH_RS06935 PF00237 Ribosomal protein L22p/L17e ARCH_RS06940 PF00203 Ribosomal protein S19 ARCH_RS06945 PF00181 Ribosomal Proteins L2, RNA binding domain ARCH_RS06945 PF03947 Ribosomal Proteins L2, C-terminal domain ARCH_RS06950 PF00276 Ribosomal protein L23 ARCH_RS06955 PF00573 Ribosomal protein L4/L1 family ARCH_RS06960 PF00297 Ribosomal protein L3 ARCH_RS06965 PF00338 Ribosomal protein S10p/S20e ARCH_RS06970 PF00009 Elongation factor Tu GTP binding domain ARCH_RS06970 PF03143 Elongation factor Tu C-terminal domain ARCH_RS06970 PF03144 Elongation factor Tu domain 2 ARCH_RS06975 PF14492 Elongation Factor G, domain II ARCH_RS06975 PF03764 Elongation factor G, domain IV ARCH_RS06975 PF03144 Elongation factor Tu domain 2 ARCH_RS06975 PF00009 Elongation factor Tu GTP binding domain ARCH_RS06975 PF00679 Elongation factor G C-terminus ARCH_RS06980 PF00177 Ribosomal protein S7p/S5e ARCH_RS06985 PF00164 Ribosomal protein S12/S23 ARCH_RS06995 PF00623 RNA polymerase Rpb1, domain 2 ARCH_RS06995 PF04997 RNA polymerase Rpb1, domain 1 ARCH_RS06995 PF04983 RNA polymerase Rpb1, domain 3 ARCH_RS06995 PF05000 RNA polymerase Rpb1, domain 4 ARCH_RS06995 PF04998 RNA polymerase Rpb1, domain 5 ARCH_RS07000 PF04563 RNA polymerase beta subunit ARCH_RS07000 PF04561 RNA polymerase Rpb2, domain 2 ARCH_RS07000 PF04565 RNA polymerase Rpb2, domain 3 ARCH_RS07000 PF10385 RNA polymerase beta subunit external 1 domain ARCH_RS07000 PF00562 RNA polymerase Rpb2, domain 6 ARCH_RS07000 PF04560 RNA polymerase Rpb2, domain 7 ARCH_RS07005 PF00542 Ribosomal protein L7/L12 C-terminal domain ARCH_RS07005 PF16320 Ribosomal protein L7/L12 dimerisation domain ARCH_RS07010 PF00466 Ribosomal protein L10 ARCH_RS07015 PF00485 Phosphoribulokinase / Uridine kinase family ARCH_RS07020 PF00687 Ribosomal protein L1p/L10e family ARCH_RS07025 PF03946 Ribosomal protein L11, N-terminal domain ARCH_RS07025 PF00298 Ribosomal protein L11, RNA binding domain ARCH_RS07030 PF02357 Transcription termination factor nusG ARCH_RS07035 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ARCH_RS07045 PF00155 Aminotransferase class I and II ARCH_RS07055 PF01548 Transposase ARCH_RS07055 PF02371 Transposase IS116/IS110/IS902 family ARCH_RS07060 PF01636 Phosphotransferase enzyme family ARCH_RS07065 PF00962 Adenosine/AMP deaminase ARCH_RS07080 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ARCH_RS07080 PF01565 FAD binding domain ARCH_RS07100 PF04461 Protein of unknown function (DUF520) ARCH_RS07105 PF07992 Pyridine nucleotide-disulphide oxidoreductase ARCH_RS07110 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ARCH_RS07110 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ARCH_RS07125 PF00672 HAMP domain ARCH_RS07125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS07125 PF00512 His Kinase A (phospho-acceptor) domain ARCH_RS07130 PF00486 Transcriptional regulatory protein, C terminal ARCH_RS07130 PF00072 Response regulator receiver domain ARCH_RS07155 PF02467 Transcription factor WhiB ARCH_RS07165 PF03816 Cell envelope-related transcriptional attenuator domain ARCH_RS07170 PF03816 Cell envelope-related transcriptional attenuator domain ARCH_RS07175 PF00512 His Kinase A (phospho-acceptor) domain ARCH_RS07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS07175 PF00672 HAMP domain ARCH_RS07180 PF00486 Transcriptional regulatory protein, C terminal ARCH_RS07180 PF00072 Response regulator receiver domain ARCH_RS07185 PF16701 Adenylate cyclase regulatory domain ARCH_RS07185 PF00211 Adenylate and Guanylate cyclase catalytic domain ARCH_RS07195 PF02545 Maf-like protein ARCH_RS07200 PF00285 Citrate synthase, C-terminal domain ARCH_RS07205 PF00037 4Fe-4S binding domain ARCH_RS07220 PF14492 Elongation Factor G, domain II ARCH_RS07220 PF00009 Elongation factor Tu GTP binding domain ARCH_RS07220 PF03144 Elongation factor Tu domain 2 ARCH_RS07220 PF00679 Elongation factor G C-terminus ARCH_RS07230 PF00005 ABC transporter ARCH_RS07230 PF00664 ABC transporter transmembrane region ARCH_RS07235 PF00005 ABC transporter ARCH_RS07235 PF00664 ABC transporter transmembrane region ARCH_RS07240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ARCH_RS07245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ARCH_RS07245 PF00005 ABC transporter ARCH_RS07250 PF12911 N-terminal TM domain of oligopeptide transport permease C ARCH_RS07250 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS07255 PF00528 Binding-protein-dependent transport system inner membrane component ARCH_RS07260 PF03099 Biotin/lipoate A/B protein ligase family ARCH_RS07265 PF04055 Radical SAM superfamily ARCH_RS07265 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ARCH_RS07270 PF13193 AMP-binding enzyme C-terminal domain ARCH_RS07270 PF00501 AMP-binding enzyme ARCH_RS07275 PF02127 Aminopeptidase I zinc metalloprotease (M18) ARCH_RS07290 PF03971 Monomeric isocitrate dehydrogenase ARCH_RS07300 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ARCH_RS07300 PF00056 lactate/malate dehydrogenase, NAD binding domain ARCH_RS07305 PF01557 Fumarylacetoacetate (FAA) hydrolase family ARCH_RS07310 PF00561 alpha/beta hydrolase fold ARCH_RS07320 PF01546 Peptidase family M20/M25/M40 ARCH_RS07320 PF07687 Peptidase dimerisation domain ARCH_RS07325 PF00367 phosphotransferase system, EIIB ARCH_RS07325 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ARCH_RS07325 PF02378 Phosphotransferase system, EIIC ARCH_RS07330 PF00874 PRD domain ARCH_RS07330 PF03123 CAT RNA binding domain ARCH_RS07335 PF02896 PEP-utilising enzyme, TIM barrel domain ARCH_RS07335 PF05524 PEP-utilising enzyme, N-terminal ARCH_RS07335 PF00391 PEP-utilising enzyme, mobile domain ARCH_RS07340 PF00381 PTS HPr component phosphorylation site ARCH_RS07360 PF03358 NADPH-dependent FMN reductase ARCH_RS07375 PF13088 BNR repeat-like domain ARCH_RS07375 PF00754 F5/8 type C domain ARCH_RS07375 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase ARCH_RS07380 PF00210 Ferritin-like domain ARCH_RS07395 PF00578 AhpC/TSA family ARCH_RS07400 PF01578 Cytochrome C assembly protein ARCH_RS07405 PF05140 ResB-like family ARCH_RS07410 PF02683 Cytochrome C biogenesis protein transmembrane region ARCH_RS07420 PF02335 Cytochrome c552 ARCH_RS07430 PF02502 Ribose/Galactose Isomerase ARCH_RS07435 PF00596 Class II Aldolase and Adducin N-terminal domain ARCH_RS07440 PF00356 Bacterial regulatory proteins, lacI family ARCH_RS07450 PF03167 Uracil DNA glycosylase superfamily ARCH_RS07470 PF00209 Sodium:neurotransmitter symporter family ARCH_RS07475 PF00005 ABC transporter ARCH_RS07480 PF00884 Sulfatase ARCH_RS07485 PF13407 Periplasmic binding protein domain ARCH_RS07485 PF00356 Bacterial regulatory proteins, lacI family ARCH_RS07490 PF00083 Sugar (and other) transporter ARCH_RS07495 PF13186 Iron-sulfur cluster-binding domain ARCH_RS07495 PF04055 Radical SAM superfamily ARCH_RS07500 PF01925 Sulfite exporter TauE/SafE ARCH_RS07515 PF01926 50S ribosome-binding GTPase ARCH_RS07515 PF06071 Protein of unknown function (DUF933) ARCH_RS07520 PF02646 RmuC family ARCH_RS07540 PF02401 LytB protein ARCH_RS07545 PF13742 OB-fold nucleic acid binding domain ARCH_RS07545 PF02601 Exonuclease VII, large subunit ARCH_RS07550 PF02609 Exonuclease VII small subunit ARCH_RS07555 PF00294 pfkB family carbohydrate kinase ARCH_RS07555 PF01467 Cytidylyltransferase-like ARCH_RS07560 PF01255 Putative undecaprenyl diphosphate synthase ARCH_RS07565 PF03006 Haemolysin-III related ARCH_RS07570 PF01272 Transcription elongation factor, GreA/GreB, C-term ARCH_RS07570 PF03449 Transcription elongation factor, N-terminal ARCH_RS07575 PF01625 Peptide methionine sulfoxide reductase ARCH_RS07580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ARCH_RS07590 PF00005 ABC transporter ARCH_RS07620 PF02541 Ppx/GppA phosphatase family ARCH_RS07635 PF03952 Enolase, N-terminal domain ARCH_RS07635 PF00113 Enolase, C-terminal TIM barrel domain ARCH_RS07640 PF02559 CarD-like/TRCF domain ARCH_RS07640 PF00271 Helicase conserved C-terminal domain ARCH_RS07640 PF03461 TRCF domain ARCH_RS07640 PF17757 UvrB interaction domain ARCH_RS07640 PF00270 DEAD/DEAH box helicase ARCH_RS07645 PF01195 Peptidyl-tRNA hydrolase ARCH_RS07650 PF14693 Ribosomal protein TL5, C-terminal domain ARCH_RS07650 PF01386 Ribosomal L25p family ARCH_RS07655 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ARCH_RS07655 PF14572 Phosphoribosyl synthetase-associated domain ARCH_RS07660 PF00132 Bacterial transferase hexapeptide (six repeats) ARCH_RS07660 PF12804 MobA-like NTP transferase domain ARCH_RS07670 PF08361 MAATS-type transcriptional repressor, C-terminal region ARCH_RS07670 PF00440 Bacterial regulatory proteins, tetR family ARCH_RS07675 PF00005 ABC transporter ARCH_RS07675 PF13732 Domain of unknown function (DUF4162) ARCH_RS07695 PF00005 ABC transporter ARCH_RS07780 PF00574 Clp protease ARCH_RS07785 PF04860 Phage portal protein ARCH_RS07790 PF01022 Bacterial regulatory protein, arsR family ARCH_RS07800 PF01451 Low molecular weight phosphotyrosine protein phosphatase ARCH_RS07825 PF01022 Bacterial regulatory protein, arsR family ARCH_RS07885 PF01527 Transposase ARCH_RS07895 PF00872 Transposase, Mutator family ARCH_RS07900 PF00005 ABC transporter ARCH_RS07905 PF00664 ABC transporter transmembrane region ARCH_RS07905 PF00005 ABC transporter ARCH_RS07905 PF08021 Siderophore-interacting FAD-binding domain ARCH_RS07905 PF04954 Siderophore-interacting protein ARCH_RS07910 PF00005 ABC transporter ARCH_RS07925 PF00239 Resolvase, N terminal domain ARCH_RS07925 PF02796 Helix-turn-helix domain of resolvase ARCH_RS07945 PF01555 DNA methylase ARCH_RS07945 PF18273 Type III R-M EcoP15I C-terminal domain ARCH_RS07960 PF00005 ABC transporter ARCH_RS07960 PF16326 ABC transporter C-terminal domain ARCH_RS07960 PF12848 ABC transporter ARCH_RS07965 PF00288 GHMP kinases N terminal domain ARCH_RS07965 PF08544 GHMP kinases C terminal ARCH_RS07970 PF02378 Phosphotransferase system, EIIC ARCH_RS07970 PF00367 phosphotransferase system, EIIB ARCH_RS07970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ARCH_RS07975 PF02378 Phosphotransferase system, EIIC ARCH_RS07975 PF00367 phosphotransferase system, EIIB ARCH_RS07980 PF00874 PRD domain ARCH_RS07980 PF03123 CAT RNA binding domain ARCH_RS07985 PF00398 Ribosomal RNA adenine dimethylase ARCH_RS07995 PF01026 TatD related DNase ARCH_RS08000 PF09334 tRNA synthetases class I (M) ARCH_RS08005 PF00857 Isochorismatase family ARCH_RS08010 PF08818 Domain of unknown function (DU1801) ARCH_RS08015 PF03176 MMPL family ARCH_RS08020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ARCH_RS08035 PF00005 ABC transporter ARCH_RS08050 PF00196 Bacterial regulatory proteins, luxR family ARCH_RS08050 PF00072 Response regulator receiver domain ARCH_RS08055 PF05175 Methyltransferase small domain ARCH_RS08055 PF08468 Methyltransferase small domain N-terminal ARCH_RS08075 PF03453 MoeA N-terminal region (domain I and II) ARCH_RS08075 PF00994 Probable molybdopterin binding domain ARCH_RS08075 PF03454 MoeA C-terminal region (domain IV) ARCH_RS08080 PF01812 5-formyltetrahydrofolate cyclo-ligase family ARCH_RS08090 PF01741 Large-conductance mechanosensitive channel, MscL ARCH_RS08105 PF12368 Rhodanase C-terminal ARCH_RS08105 PF00581 Rhodanese-like domain ARCH_RS08105 PF17773 UPF0176 acylphosphatase like domain ARCH_RS08115 PF00582 Universal stress protein family ARCH_RS08120 PF08239 Bacterial SH3 domain ARCH_RS08120 PF00877 NlpC/P60 family ARCH_RS08120 PF01476 LysM domain ARCH_RS08125 PF18357 Diphteria toxin repressor SH3 domain ARCH_RS08125 PF01325 Iron dependent repressor, N-terminal DNA binding domain ARCH_RS08125 PF02742 Iron dependent repressor, metal binding and dimerisation domain ARCH_RS08130 PF00860 Permease family ARCH_RS08135 PF01238 Phosphomannose isomerase type I ARCH_RS08140 PF11228 Protein of unknown function (DUF3027) ARCH_RS08145 PF00313 'Cold-shock' DNA-binding domain ARCH_RS08155 PF04012 PspA/IM30 family ARCH_RS08165 PF00486 Transcriptional regulatory protein, C terminal ARCH_RS08165 PF00072 Response regulator receiver domain ARCH_RS08170 PF00512 His Kinase A (phospho-acceptor) domain ARCH_RS08170 PF00672 HAMP domain ARCH_RS08170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS08175 PF00501 AMP-binding enzyme ARCH_RS08175 PF01553 Acyltransferase ARCH_RS08190 PF00118 TCP-1/cpn60 chaperonin family ARCH_RS08205 PF03167 Uracil DNA glycosylase superfamily ARCH_RS08215 PF00155 Aminotransferase class I and II ARCH_RS08220 PF08240 Alcohol dehydrogenase GroES-like domain ARCH_RS08220 PF00107 Zinc-binding dehydrogenase ARCH_RS08225 PF02386 Cation transport protein ARCH_RS08235 PF01235 Sodium:alanine symporter family ARCH_RS08255 PF17912 MalK OB fold domain ARCH_RS08255 PF00005 ABC transporter ARCH_RS08265 PF02132 RecR protein ARCH_RS08265 PF13662 Toprim domain ARCH_RS08290 PF01527 Transposase ARCH_RS08310 PF00860 Permease family ARCH_RS08325 PF08032 RNA 2'-O ribose methyltransferase substrate binding ARCH_RS08325 PF00588 SpoU rRNA Methylase family ARCH_RS08330 PF01406 tRNA synthetases class I (C) catalytic domain ARCH_RS08330 PF09190 DALR domain ARCH_RS08340 PF02542 YgbB family ARCH_RS08345 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ARCH_RS08350 PF02559 CarD-like/TRCF domain ARCH_RS08355 PF00072 Response regulator receiver domain ARCH_RS08355 PF00486 Transcriptional regulatory protein, C terminal ARCH_RS08360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS08360 PF00512 His Kinase A (phospho-acceptor) domain ARCH_RS08365 PF01895 PhoU domain ARCH_RS08370 PF00300 Histidine phosphatase superfamily (branch 1) ARCH_RS08380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ARCH_RS08380 PF07992 Pyridine nucleotide-disulphide oxidoreductase ARCH_RS08385 PF02583 Metal-sensitive transcriptional repressor ARCH_RS08395 PF00860 Permease family ARCH_RS08420 PF01022 Bacterial regulatory protein, arsR family ARCH_RS08430 PF02899 Phage integrase, N-terminal SAM-like domain ARCH_RS08430 PF00589 Phage integrase family ARCH_RS08435 PF13614 AAA domain ARCH_RS08550 PF00561 alpha/beta hydrolase fold ARCH_RS08560 PF02223 Thymidylate kinase ARCH_RS08565 PF01131 DNA topoisomerase ARCH_RS08565 PF01751 Toprim domain ARCH_RS08565 PF13368 Topoisomerase C-terminal repeat ARCH_RS08570 PF05175 Methyltransferase small domain ARCH_RS08585 PF00271 Helicase conserved C-terminal domain ARCH_RS08585 PF09369 Domain of unknown function (DUF1998) ARCH_RS08585 PF00270 DEAD/DEAH box helicase ARCH_RS08620 PF00437 Type II/IV secretion system protein ARCH_RS08635 PF00561 alpha/beta hydrolase fold ARCH_RS08645 PF00633 Helix-hairpin-helix motif ARCH_RS08645 PF10576 Iron-sulfur binding domain of endonuclease III ARCH_RS08645 PF00730 HhH-GPD superfamily base excision DNA repair protein ARCH_RS08650 PF00027 Cyclic nucleotide-binding domain ARCH_RS08650 PF13545 Crp-like helix-turn-helix domain ARCH_RS08665 PF02467 Transcription factor WhiB ARCH_RS08685 PF00294 pfkB family carbohydrate kinase ARCH_RS08695 PF07690 Major Facilitator Superfamily ARCH_RS08715 PF04650 YSIRK type signal peptide ARCH_RS08715 PF00746 LPXTG cell wall anchor motif ARCH_RS08715 PF17961 Bacterial Ig domain ARCH_RS08715 PF17210 SdrD B-like domain ARCH_RS08715 PF10425 C-terminus of bacterial fibrinogen-binding adhesin ARCH_RS08730 PF08903 Domain of unknown function (DUF1846) ARCH_RS08735 PF01327 Polypeptide deformylase ARCH_RS08760 PF14437 MafB19-like deaminase ARCH_RS08780 PF00535 Glycosyl transferase family 2 ARCH_RS08785 PF00196 Bacterial regulatory proteins, luxR family ARCH_RS08795 PF00781 Diacylglycerol kinase catalytic domain ARCH_RS08800 PF02403 Seryl-tRNA synthetase N-terminal domain ARCH_RS08800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ARCH_RS08835 PF09704 CRISPR-associated protein (Cas_Cas5) ARCH_RS08860 PF18019 HD domain ARCH_RS08860 PF18395 Cas3 C-terminal domain ARCH_RS08865 PF01867 CRISPR associated protein Cas1 ARCH_RS08885 PF00083 Sugar (and other) transporter ARCH_RS08890 PF07859 alpha/beta hydrolase fold ARCH_RS08895 PF07690 Major Facilitator Superfamily ARCH_RS08900 PF00939 Sodium:sulfate symporter transmembrane region ARCH_RS08910 PF18080 Galactose mutarotase-like fold domain ARCH_RS08910 PF17974 Galactose-binding domain-like ARCH_RS08910 PF17451 Glycosyl hydrolase 101 beta sandwich domain ARCH_RS08910 PF12905 Endo-alpha-N-acetylgalactosaminidase ARCH_RS08910 PF08305 NPCBM/NEW2 domain ARCH_RS08910 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase ARCH_RS08920 PF08245 Mur ligase middle domain ARCH_RS08925 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ARCH_RS08925 PF07685 CobB/CobQ-like glutamine amidotransferase domain ARCH_RS08930 PF05958 tRNA (Uracil-5-)-methyltransferase ARCH_RS08950 PF01527 Transposase ARCH_RS08955 PF04408 Helicase associated domain (HA2) ARCH_RS08955 PF00270 DEAD/DEAH box helicase ARCH_RS08955 PF00271 Helicase conserved C-terminal domain ARCH_RS08955 PF08482 ATP-dependent helicase C-terminal ARCH_RS08970 PF01702 Queuine tRNA-ribosyltransferase ARCH_RS08990 PF13462 Thioredoxin ARCH_RS08990 PF06965 Na+/H+ antiporter 1 ARCH_RS09000 PF00248 Aldo/keto reductase family ARCH_RS09010 PF03796 DnaB-like helicase C terminal domain ARCH_RS09010 PF00772 DnaB-like helicase N terminal domain ARCH_RS09035 PF01281 Ribosomal protein L9, N-terminal domain ARCH_RS09035 PF03948 Ribosomal protein L9, C-terminal domain ARCH_RS09040 PF01084 Ribosomal protein S18 ARCH_RS09045 PF00436 Single-strand binding protein family ARCH_RS09050 PF01250 Ribosomal protein S6 ARCH_RS09055 PF00905 Penicillin binding protein transpeptidase domain ARCH_RS09055 PF00912 Transglycosylase ARCH_RS09060 PF01594 AI-2E family transporter ARCH_RS09065 PF07690 Major Facilitator Superfamily ARCH_RS09070 PF12627 Probable RNA and SrmB- binding site of polymerase A ARCH_RS09070 PF13735 tRNA nucleotidyltransferase domain 2 putative ARCH_RS09070 PF01743 Poly A polymerase head domain ARCH_RS09075 PF00293 NUDIX domain ARCH_RS09090 PF07992 Pyridine nucleotide-disulphide oxidoreductase ARCH_RS09095 PF00392 Bacterial regulatory proteins, gntR family ARCH_RS09095 PF00155 Aminotransferase class I and II ARCH_RS09100 PF02195 ParB-like nuclease domain ARCH_RS09100 PF17762 HTH domain found in ParB protein ARCH_RS09105 PF13614 AAA domain ARCH_RS09110 PF02527 rRNA small subunit methyltransferase G ARCH_RS09115 PF02371 Transposase IS116/IS110/IS902 family ARCH_RS09115 PF01548 Transposase ARCH_RS09120 PF14804 Jag N-terminus ARCH_RS09120 PF01424 R3H domain ARCH_RS09125 PF02096 60Kd inner membrane protein ARCH_RS09130 PF01809 Putative membrane protein insertion efficiency factor ARCH_RS09135 PF00825 Ribonuclease P ARCH_RS09140 PF00468 Ribosomal protein L34 ARCH_RS09165 PF00754 F5/8 type C domain ARCH_RS09165 PF13088 BNR repeat-like domain ARCH_RS09165 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase ARCH_RS09175 PF01048 Phosphorylase superfamily ARCH_RS09205 PF00877 NlpC/P60 family ARCH_RS09235 PF01551 Peptidase family M23 ARCH_RS09235 PF08525 Opacity-associated protein A N-terminal motif ARCH_RS09235 PF01476 LysM domain ARCH_RS09240 PF00288 GHMP kinases N terminal domain ARCH_RS09240 PF08544 GHMP kinases C terminal ARCH_RS09265 PF00994 Probable molybdopterin binding domain ARCH_RS09275 PF02371 Transposase IS116/IS110/IS902 family ARCH_RS09275 PF01548 Transposase ARCH_RS09280 PF02371 Transposase IS116/IS110/IS902 family ARCH_RS09280 PF01548 Transposase ARCH_RS09290 PF05231 MASE1 ARCH_RS09290 PF07730 Histidine kinase ARCH_RS09290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS09300 PF14748 Pyrroline-5-carboxylate reductase dimerisation ARCH_RS09300 PF03807 NADP oxidoreductase coenzyme F420-dependent ARCH_RS09305 PF14748 Pyrroline-5-carboxylate reductase dimerisation ARCH_RS09305 PF03807 NADP oxidoreductase coenzyme F420-dependent ARCH_RS09335 PF01268 Formate--tetrahydrofolate ligase ARCH_RS09340 PF01268 Formate--tetrahydrofolate ligase ARCH_RS09350 PF04229 GrpB protein ARCH_RS09350 PF01121 Dephospho-CoA kinase ARCH_RS09375 PF02225 PA domain ARCH_RS09375 PF00082 Subtilase family ARCH_RS09375 PF00746 LPXTG cell wall anchor motif ARCH_RS09375 PF06280 Fn3-like domain ARCH_RS09380 PF00440 Bacterial regulatory proteins, tetR family ARCH_RS09400 PF01757 Acyltransferase family ARCH_RS09405 PF13088 BNR repeat-like domain ARCH_RS09405 PF00754 F5/8 type C domain ARCH_RS09405 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase ARCH_RS09450 PF07730 Histidine kinase ARCH_RS09450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ARCH_RS09470 PF00069 Protein kinase domain ARCH_RS09470 PF00400 WD domain, G-beta repeat ARCH_RS09475 PF12169 DNA polymerase III subunits gamma and tau domain III ARCH_RS09485 PF01464 Transglycosylase SLT domain ARCH_RS09485 PF10145 Phage-related minor tail protein ARCH_RS09485 PF01551 Peptidase family M23