ARCH_RS00010	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS00010	SM00760	Bacterial dnaA protein helix-turn-helix domain
ARCH_RS00015	SM00480	DNA polymerase III beta subunit
ARCH_RS00030	SM00387	Histidine kinase-like ATPases
ARCH_RS00030	SM00433	TopoisomeraseII
ARCH_RS00035	SM00434	DNA Topoisomerase IV
ARCH_RS00180	SM00872	Alpha mannosidase, middle domain
ARCH_RS00185	SM00354	helix_turn _helix lactose operon repressor
ARCH_RS00200	SM00829	Enoylreductase
ARCH_RS00230	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ARCH_RS00230	SM00866	ARCH_RS00230
ARCH_RS00285	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS00295	SM00812	Alpha-L-fucosidase
ARCH_RS00335	SM00020	Trypsin-like serine protease
ARCH_RS00355	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS00525	SM00220	Serine/Threonine protein kinases, catalytic domain
ARCH_RS00525	SM00740	ARCH_RS00525
ARCH_RS00540	SM00331	Sigma factor PP2C-like phosphatases
ARCH_RS00540	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ARCH_RS00545	SM00240	Forkhead associated domain
ARCH_RS00550	SM00240	Forkhead associated domain
ARCH_RS00565	SM00506	Appr-1"-p processing enzyme
ARCH_RS00615	SM00226	Low molecular weight phosphatase family
ARCH_RS00620	SM00731	SprT homologues.
ARCH_RS00630	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS00640	SM00062	Bacterial periplasmic substrate-binding proteins
ARCH_RS00640	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ARCH_RS00645	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS00645	SM00487	DEAD-like helicases superfamily
ARCH_RS00645	SM00490	helicase superfamily c-terminal domain
ARCH_RS00645	SM00847	Helicase associated domain (HA2)  Add an annotation
ARCH_RS00660	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ARCH_RS00660	SM00866	ARCH_RS00660
ARCH_RS00725	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS00740	SM00529	Helix-turn-helix diphteria tox regulatory element
ARCH_RS00740	SM00899	ARCH_RS00740
ARCH_RS00795	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS00860	SM00271	DnaJ molecular chaperone homology domain
ARCH_RS00865	SM00422	helix_turn_helix, mercury resistance
ARCH_RS00910	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS00910	SM01086	C-terminal, D2-small domain, of ClpB protein
ARCH_RS01025	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ARCH_RS01130	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS01175	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS01175	SM01086	C-terminal, D2-small domain, of ClpB protein
ARCH_RS01290	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS01305	SM00905	Dihydroneopterin aldolase
ARCH_RS01380	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ARCH_RS01380	SM00478	endonuclease III
ARCH_RS01415	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS01435	SM00347	helix_turn_helix multiple antibiotic resistance protein
ARCH_RS01440	SM00855	Phosphoglycerate mutase family
ARCH_RS01470	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ARCH_RS01485	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ARCH_RS01530	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
ARCH_RS01535	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
ARCH_RS01580	SM00957	SecA DEAD-like domain
ARCH_RS01580	SM00958	SecA preprotein cross-linking domain
ARCH_RS01605	SM00257	Lysin motif
ARCH_RS01620	SM00858	ARCH_RS01620
ARCH_RS01685	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ARCH_RS01685	SM00895	ARCH_RS01685
ARCH_RS01725	SM00244	prohibitin homologues
ARCH_RS01760	SM00861	Transketolase, pyrimidine binding domain
ARCH_RS01765	SM00116	Domain in cystathionine beta-synthase and other proteins.
ARCH_RS01765	SM01091	Transporter associated domain
ARCH_RS01770	SM00116	Domain in cystathionine beta-synthase and other proteins.
ARCH_RS01790	SM00836	DALR anticodon binding domain
ARCH_RS01790	SM01016	Arginyl tRNA synthetase N terminal dom
ARCH_RS01805	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS01815	SM00937	ARCH_RS01815
ARCH_RS01870	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS01920	SM00642	Alpha-amylase domain
ARCH_RS01925	SM00354	helix_turn _helix lactose operon repressor
ARCH_RS01950	SM00642	Alpha-amylase domain
ARCH_RS01960	SM00642	Alpha-amylase domain
ARCH_RS01965	SM00642	Alpha-amylase domain
ARCH_RS01985	SM00642	Alpha-amylase domain
ARCH_RS01995	SM00341	Helicase and RNase D C-terminal
ARCH_RS02030	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ARCH_RS02055	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02090	SM00387	Histidine kinase-like ATPases
ARCH_RS02110	SM00421	helix_turn_helix, Lux Regulon
ARCH_RS02110	SM00448	cheY-homologous receiver domain
ARCH_RS02120	SM00292	breast cancer carboxy-terminal domain
ARCH_RS02120	SM00532	Ligase N family
ARCH_RS02125	SM00155	Phospholipase D. Active site motifs.
ARCH_RS02140	SM00845	GatB domain
ARCH_RS02145	SM00919	Malic enzyme, NAD binding domain
ARCH_RS02145	SM01274	ARCH_RS02145
ARCH_RS02220	SM00487	DEAD-like helicases superfamily
ARCH_RS02220	SM00490	helicase superfamily c-terminal domain
ARCH_RS02225	SM00354	helix_turn _helix lactose operon repressor
ARCH_RS02270	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02305	SM00479	ARCH_RS02305
ARCH_RS02330	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02470	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02505	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ARCH_RS02540	SM00812	Alpha-L-fucosidase
ARCH_RS02580	SM00974	ARCH_RS02580
ARCH_RS02650	SM00470	ParB-like nuclease domain
ARCH_RS02680	SM00421	helix_turn_helix, Lux Regulon
ARCH_RS02680	SM00448	cheY-homologous receiver domain
ARCH_RS02695	SM00421	helix_turn_helix, Lux Regulon
ARCH_RS02695	SM00448	cheY-homologous receiver domain
ARCH_RS02710	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02730	SM00833	Cobalamin synthesis protein cobW C-terminal domain
ARCH_RS02775	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02775	SM00994	ClpX C4-type zinc finger
ARCH_RS02775	SM01086	C-terminal, D2-small domain, of ClpB protein
ARCH_RS02780	SM00354	helix_turn _helix lactose operon repressor
ARCH_RS02815	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02820	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02835	SM00562	ARCH_RS02835
ARCH_RS02840	SM01120	ARCH_RS02840
ARCH_RS02845	SM00968	SMC proteins Flexible Hinge Domain
ARCH_RS02855	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02855	SM00962	SRP54-type protein, GTPase domain
ARCH_RS02855	SM00963	SRP54-type protein, helical bundle domain
ARCH_RS02860	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02860	SM00962	SRP54-type protein, GTPase domain
ARCH_RS02860	SM00963	SRP54-type protein, helical bundle domain
ARCH_RS02935	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS02975	SM00893	Electron transfer flavoprotein domain
ARCH_RS03005	SM00530	Helix-turn-helix XRE-family like proteins 
ARCH_RS03045	SM00363	S4 RNA-binding domain
ARCH_RS03175	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS03190	SM00904	Riboflavin kinase
ARCH_RS03215	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS03220	SM01387	ARCH_RS03220
ARCH_RS03225	SM00316	Ribosomal protein S1-like RNA-binding domain
ARCH_RS03225	SM00322	K homology RNA-binding domain
ARCH_RS03245	SM00849	Metallo-beta-lactamase superfamily
ARCH_RS03250	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS03265	SM00448	cheY-homologous receiver domain
ARCH_RS03265	SM00862	Transcriptional regulatory protein, C terminal
ARCH_RS03270	SM00387	Histidine kinase-like ATPases
ARCH_RS03270	SM00388	His Kinase A (phosphoacceptor) domain
ARCH_RS03280	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS03280	SM00843	ARCH_RS03280
ARCH_RS03295	SM00530	Helix-turn-helix XRE-family like proteins 
ARCH_RS03300	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS03310	SM00729	Elongator protein 3, MiaB family, Radical SAM
ARCH_RS03330	SM00487	DEAD-like helicases superfamily
ARCH_RS03330	SM00491	ARCH_RS03330
ARCH_RS03340	SM00257	Lysin motif
ARCH_RS03440	SM00864	Tubulin/FtsZ family, GTPase domain
ARCH_RS03440	SM00865	Tubulin/FtsZ family, C-terminal domain
ARCH_RS03480	SM00481	DNA polymerase alpha chain like domain
ARCH_RS03505	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS03535	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ARCH_RS03545	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS03555	SM00450	Rhodanese Homology Domain
ARCH_RS03560	SM00400	zinc finger
ARCH_RS03560	SM00493	ARCH_RS03560
ARCH_RS03640	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS03645	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS03705	SM01230	ARCH_RS03705
ARCH_RS03715	SM00855	Phosphoglycerate mutase family
ARCH_RS03720	SM01230	ARCH_RS03720
ARCH_RS03750	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS03810	SM00465	GIY-YIG type nucleases (URI domain)
ARCH_RS03810	SM00479	ARCH_RS03810
ARCH_RS03830	SM00220	Serine/Threonine protein kinases, catalytic domain
ARCH_RS03830	SM00740	ARCH_RS03830
ARCH_RS03835	SM00257	Lysin motif
ARCH_RS03865	SM00479	ARCH_RS03865
ARCH_RS03875	SM00387	Histidine kinase-like ATPases
ARCH_RS03875	SM00433	TopoisomeraseII
ARCH_RS03890	SM00434	DNA Topoisomerase IV
ARCH_RS03965	SM00487	DEAD-like helicases superfamily
ARCH_RS03965	SM00490	helicase superfamily c-terminal domain
ARCH_RS03995	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04005	SM01001	AIR carboxylase
ARCH_RS04030	SM00861	Transketolase, pyrimidine binding domain
ARCH_RS04035	SM00341	Helicase and RNase D C-terminal
ARCH_RS04035	SM00474	3'-5' exonuclease
ARCH_RS04045	SM00642	Alpha-amylase domain
ARCH_RS04050	SM00642	Alpha-amylase domain
ARCH_RS04055	SM00642	Alpha-amylase domain
ARCH_RS04125	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04140	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ARCH_RS04185	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ARCH_RS04190	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04195	SM01323	ARCH_RS04195
ARCH_RS04215	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ARCH_RS04215	SM00954	Region found in RelA / SpoT proteins
ARCH_RS04225	SM00849	Metallo-beta-lactamase superfamily
ARCH_RS04245	SM00487	DEAD-like helicases superfamily
ARCH_RS04245	SM00490	helicase superfamily c-terminal domain
ARCH_RS04270	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04275	SM00363	S4 RNA-binding domain
ARCH_RS04275	SM01390	ARCH_RS04275
ARCH_RS04280	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ARCH_RS04285	SM00732	Likely ribonuclease with RNase H fold.
ARCH_RS04320	SM00841	Elongation factor P, C-terminal
ARCH_RS04320	SM01185	ARCH_RS04320
ARCH_RS04335	SM00072	Guanylate kinase homologues.
ARCH_RS04340	SM01409	ARCH_RS04340
ARCH_RS04400	SM00487	DEAD-like helicases superfamily
ARCH_RS04400	SM00490	helicase superfamily c-terminal domain
ARCH_RS04400	SM01142	ARCH_RS04400
ARCH_RS04415	SM00422	helix_turn_helix, mercury resistance
ARCH_RS04420	SM00422	helix_turn_helix, mercury resistance
ARCH_RS04425	SM00240	Forkhead associated domain
ARCH_RS04440	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04450	SM00363	S4 RNA-binding domain
ARCH_RS04475	SM00861	Transketolase, pyrimidine binding domain
ARCH_RS04495	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ARCH_RS04535	SM00487	DEAD-like helicases superfamily
ARCH_RS04535	SM00490	helicase superfamily c-terminal domain
ARCH_RS04545	SM00316	Ribosomal protein S1-like RNA-binding domain
ARCH_RS04555	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ARCH_RS04555	SM00475	5'-3' exonuclease
ARCH_RS04555	SM00482	DNA polymerase A domain
ARCH_RS04565	SM00448	cheY-homologous receiver domain
ARCH_RS04565	SM01012	ARCH_RS04565
ARCH_RS04605	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04690	SM00530	Helix-turn-helix XRE-family like proteins 
ARCH_RS04700	SM00244	prohibitin homologues
ARCH_RS04710	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04725	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04750	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04810	SM00363	S4 RNA-binding domain
ARCH_RS04875	SM00873	B3/4 domain
ARCH_RS04875	SM00874	tRNA synthetase B5 domain
ARCH_RS04875	SM00896	Ferredoxin-fold anticodon binding domain
ARCH_RS04890	SM01130	ARCH_RS04890
ARCH_RS04895	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04900	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS04915	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ARCH_RS04965	SM00116	Domain in cystathionine beta-synthase and other proteins.
ARCH_RS04965	SM01091	Transporter associated domain
ARCH_RS04985	SM00271	DnaJ molecular chaperone homology domain
ARCH_RS05020	SM00729	Elongator protein 3, MiaB family, Radical SAM
ARCH_RS05030	SM00838	Elongation factor G C-terminus
ARCH_RS05060	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ARCH_RS05060	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ARCH_RS05075	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ARCH_RS05100	SM00756	ARCH_RS05100
ARCH_RS05120	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS05190	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ARCH_RS05205	SM00851	MGS-like domain
ARCH_RS05205	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ARCH_RS05335	SM00487	DEAD-like helicases superfamily
ARCH_RS05385	SM00855	Phosphoglycerate mutase family
ARCH_RS05430	SM00316	Ribosomal protein S1-like RNA-binding domain
ARCH_RS05445	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS05450	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS05455	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ARCH_RS05455	SM00387	Histidine kinase-like ATPases
ARCH_RS05460	SM00421	helix_turn_helix, Lux Regulon
ARCH_RS05460	SM00448	cheY-homologous receiver domain
ARCH_RS05465	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ARCH_RS05465	SM01232	ARCH_RS05465
ARCH_RS05470	SM00358	Double-stranded RNA binding motif
ARCH_RS05470	SM00535	Ribonuclease III family
ARCH_RS05495	SM00487	DEAD-like helicases superfamily
ARCH_RS05495	SM00490	helicase superfamily c-terminal domain
ARCH_RS05505	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS05535	SM00563	Phosphate acyltransferases
ARCH_RS05545	SM00346	helix_turn_helix isocitrate lyase regulation
ARCH_RS05670	SM00487	DEAD-like helicases superfamily
ARCH_RS05680	SM00411	bacterial (prokaryotic) histone like domain
ARCH_RS05720	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS05735	SM00448	cheY-homologous receiver domain
ARCH_RS05735	SM00862	Transcriptional regulatory protein, C terminal
ARCH_RS05740	SM00387	Histidine kinase-like ATPases
ARCH_RS05740	SM00388	His Kinase A (phosphoacceptor) domain
ARCH_RS05785	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ARCH_RS05795	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS05820	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ARCH_RS05825	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS05835	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS05845	SM00062	Bacterial periplasmic substrate-binding proteins
ARCH_RS05885	SM00900	ARCH_RS05885
ARCH_RS05950	SM00998	Adenylosuccinate lyase C-terminus
ARCH_RS05955	SM00788	Adenylosuccinate synthetase
ARCH_RS05960	SM00116	Domain in cystathionine beta-synthase and other proteins.
ARCH_RS05960	SM01240	ARCH_RS05960
ARCH_RS05970	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS05975	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS05980	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS06000	SM00422	helix_turn_helix, mercury resistance
ARCH_RS06010	SM00530	Helix-turn-helix XRE-family like proteins 
ARCH_RS06115	SM00857	Resolvase, N terminal domain
ARCH_RS06120	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS06145	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS06150	SM00937	ARCH_RS06150
ARCH_RS06215	SM00487	DEAD-like helicases superfamily
ARCH_RS06215	SM00490	helicase superfamily c-terminal domain
ARCH_RS06225	SM00481	DNA polymerase alpha chain like domain
ARCH_RS06230	SM01011	Aminopeptidase P, N-terminal domain
ARCH_RS06235	SM00924	MgtE intracellular N domain
ARCH_RS06270	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS06280	SM00852	Probable molybdopterin binding domain
ARCH_RS06290	SM00852	Probable molybdopterin binding domain
ARCH_RS06300	SM00729	Elongator protein 3, MiaB family, Radical SAM
ARCH_RS06325	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ARCH_RS06365	SM01133	ARCH_RS06365
ARCH_RS06375	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
ARCH_RS06395	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS06455	SM00421	helix_turn_helix, Lux Regulon
ARCH_RS06455	SM00448	cheY-homologous receiver domain
ARCH_RS06490	SM00642	Alpha-amylase domain
ARCH_RS06510	SM00881	CoA binding domain
ARCH_RS06595	SM00530	Helix-turn-helix XRE-family like proteins 
ARCH_RS06630	SM01240	ARCH_RS06630
ARCH_RS06635	SM00479	ARCH_RS06635
ARCH_RS06660	SM01240	ARCH_RS06660
ARCH_RS06670	SM00883	Chaperonin 10 Kd subunit
ARCH_RS06720	SM01005	Alanine racemase, C-terminal domain
ARCH_RS06770	SM00662	RNA polymerases D
ARCH_RS06790	SM00316	Ribosomal protein S1-like RNA-binding domain
ARCH_RS06805	SM00893	Electron transfer flavoprotein domain
ARCH_RS06815	SM00849	Metallo-beta-lactamase superfamily
ARCH_RS06905	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ARCH_RS06910	SM01374	ARCH_RS06910
ARCH_RS06930	SM00322	K homology RNA-binding domain
ARCH_RS06945	SM01382	ARCH_RS06945
ARCH_RS06945	SM01383	ARCH_RS06945
ARCH_RS06965	SM01403	ARCH_RS06965
ARCH_RS06975	SM00838	Elongation factor G C-terminus
ARCH_RS06975	SM00889	Elongation factor G, domain IV
ARCH_RS06995	SM00663	RNA polymerase I subunit A N-terminus
ARCH_RS07025	SM00649	Ribosomal protein L11/L12
ARCH_RS07030	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ARCH_RS07120	SM00909	Sporulation and spore germination
ARCH_RS07125	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ARCH_RS07125	SM00387	Histidine kinase-like ATPases
ARCH_RS07125	SM00388	His Kinase A (phosphoacceptor) domain
ARCH_RS07130	SM00448	cheY-homologous receiver domain
ARCH_RS07130	SM00862	Transcriptional regulatory protein, C terminal
ARCH_RS07175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ARCH_RS07175	SM00387	Histidine kinase-like ATPases
ARCH_RS07175	SM00388	His Kinase A (phosphoacceptor) domain
ARCH_RS07180	SM00448	cheY-homologous receiver domain
ARCH_RS07180	SM00862	Transcriptional regulatory protein, C terminal
ARCH_RS07220	SM00838	Elongation factor G C-terminus
ARCH_RS07230	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS07245	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS07265	SM00729	Elongator protein 3, MiaB family, Radical SAM
ARCH_RS07330	SM01061	CAT RNA binding domain
ARCH_RS07365	SM00450	Rhodanese Homology Domain
ARCH_RS07415	SM00028	Tetratricopeptide repeats
ARCH_RS07435	SM01007	Class II Aldolase and Adducin N-terminal domain
ARCH_RS07440	SM00354	helix_turn _helix lactose operon repressor
ARCH_RS07485	SM00354	helix_turn _helix lactose operon repressor
ARCH_RS07530	SM00530	Helix-turn-helix XRE-family like proteins 
ARCH_RS07590	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS07635	SM01192	ARCH_RS07635
ARCH_RS07635	SM01193	ARCH_RS07635
ARCH_RS07640	SM00487	DEAD-like helicases superfamily
ARCH_RS07640	SM00490	helicase superfamily c-terminal domain
ARCH_RS07640	SM00982	ARCH_RS07640
ARCH_RS07640	SM01058	CarD-like/TRCF domain
ARCH_RS07655	SM01400	ARCH_RS07655
ARCH_RS07675	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS07695	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS07790	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ARCH_RS07800	SM00226	Low molecular weight phosphatase family
ARCH_RS07825	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ARCH_RS07900	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS07905	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS07910	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS07920	SM00857	Resolvase, N terminal domain
ARCH_RS07925	SM00857	Resolvase, N terminal domain
ARCH_RS07955	SM00347	helix_turn_helix multiple antibiotic resistance protein
ARCH_RS07960	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS07980	SM01061	CAT RNA binding domain
ARCH_RS07985	SM00650	Ribosomal RNA adenine dimethylases
ARCH_RS08035	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS08050	SM00421	helix_turn_helix, Lux Regulon
ARCH_RS08050	SM00448	cheY-homologous receiver domain
ARCH_RS08075	SM00852	Probable molybdopterin binding domain
ARCH_RS08085	SM00858	ARCH_RS08085
ARCH_RS08105	SM00450	Rhodanese Homology Domain
ARCH_RS08125	SM00529	Helix-turn-helix diphteria tox regulatory element
ARCH_RS08125	SM00899	ARCH_RS08125
ARCH_RS08145	SM00357	Cold shock protein domain
ARCH_RS08165	SM00448	cheY-homologous receiver domain
ARCH_RS08165	SM00862	Transcriptional regulatory protein, C terminal
ARCH_RS08170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ARCH_RS08170	SM00387	Histidine kinase-like ATPases
ARCH_RS08170	SM00388	His Kinase A (phosphoacceptor) domain
ARCH_RS08175	SM00563	Phosphate acyltransferases
ARCH_RS08205	SM00986	Uracil DNA glycosylase superfamily
ARCH_RS08205	SM00987	UreE urease accessory protein, C-terminal domain 
ARCH_RS08255	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS08265	SM00493	ARCH_RS08265
ARCH_RS08315	SM01022	ARCH_RS08315
ARCH_RS08325	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ARCH_RS08330	SM00840	ARCH_RS08330
ARCH_RS08350	SM01058	CarD-like/TRCF domain
ARCH_RS08355	SM00448	cheY-homologous receiver domain
ARCH_RS08355	SM00862	Transcriptional regulatory protein, C terminal
ARCH_RS08360	SM00387	Histidine kinase-like ATPases
ARCH_RS08360	SM00388	His Kinase A (phosphoacceptor) domain
ARCH_RS08370	SM00855	Phosphoglycerate mutase family
ARCH_RS08380	SM00450	Rhodanese Homology Domain
ARCH_RS08420	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ARCH_RS08565	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ARCH_RS08565	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ARCH_RS08565	SM00493	ARCH_RS08565
ARCH_RS08585	SM00487	DEAD-like helicases superfamily
ARCH_RS08585	SM00490	helicase superfamily c-terminal domain
ARCH_RS08645	SM00478	endonuclease III
ARCH_RS08645	SM00525	ARCH_RS08645
ARCH_RS08650	SM00100	Cyclic nucleotide-monophosphate binding domain
ARCH_RS08650	SM00419	helix_turn_helix, cAMP Regulatory protein
ARCH_RS08785	SM00421	helix_turn_helix, Lux Regulon
ARCH_RS08855	SM01101	ARCH_RS08855
ARCH_RS08860	SM00487	DEAD-like helicases superfamily
ARCH_RS08860	SM00490	helicase superfamily c-terminal domain
ARCH_RS08880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ARCH_RS08880	SM00866	ARCH_RS08880
ARCH_RS08955	SM00487	DEAD-like helicases superfamily
ARCH_RS08955	SM00490	helicase superfamily c-terminal domain
ARCH_RS08995	SM00563	Phosphate acyltransferases
ARCH_RS09005	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ARCH_RS09010	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS09070	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ARCH_RS09100	SM00470	ParB-like nuclease domain
ARCH_RS09120	SM00393	Putative single-stranded nucleic acids-binding domain
ARCH_RS09130	SM01234	ARCH_RS09130
ARCH_RS09200	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ARCH_RS09265	SM00852	Probable molybdopterin binding domain
ARCH_RS09320	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ARCH_RS09320	SM01110	ARCH_RS09320
ARCH_RS09445	SM01208	ARCH_RS09445
ARCH_RS09470	SM00220	Serine/Threonine protein kinases, catalytic domain
ARCH_RS09475	SM00382	ATPases associated with a variety of cellular activities
ARCH_RS09490	SM00191	Integrin alpha (beta-propellor repeats).
ARCH_RS09495	SM00191	Integrin alpha (beta-propellor repeats).
