locus-tag	class	description
JTE88_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JTE88_RS00010	COG0592	DNA-directed DNA polymerase activity
JTE88_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JTE88_RS00025	COG0187	DNA topoisomerase II activity
JTE88_RS00030	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JTE88_RS00060	COG3250	beta-galactosidase activity
JTE88_RS00070	COG1309	transcriptional regulator
JTE88_RS00085	COG1620	l-lactate permease
JTE88_RS00090	COG0247	lactate metabolic process
JTE88_RS00095	COG1139	Iron-sulfur cluster binding protein
JTE88_RS00100	COG1556	Lactate utilization protein
JTE88_RS00105	COG0737	Belongs to the 5'-nucleotidase family
JTE88_RS00115	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JTE88_RS00140	COG1609	Transcriptional regulator
JTE88_RS00145	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JTE88_RS00170	COG0673	inositol 2-dehydrogenase activity
JTE88_RS00175	COG2814	Major facilitator Superfamily
JTE88_RS00185	COG1082	Xylose isomerase domain protein TIM barrel
JTE88_RS00190	COG0673	inositol 2-dehydrogenase activity
JTE88_RS00195	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JTE88_RS00205	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JTE88_RS00215	COG3718	enzyme involved in inositol metabolism
JTE88_RS00220	COG3962	Belongs to the TPP enzyme family
JTE88_RS00240	COG0747	negative chemotaxis
JTE88_RS00245	COG0601	transmembrane transport
JTE88_RS00250	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JTE88_RS00260	COG1940	carbohydrate kinase activity
JTE88_RS00280	COG0584	glycerophosphoryl diester phosphodiesterase
JTE88_RS00290	COG1088	dTDP-glucose 4,6-dehydratase activity
JTE88_RS00325	COG0438	transferase activity, transferring glycosyl groups
JTE88_RS00330	COG3475	LICD family
JTE88_RS00335	COG4750	Nucleotidyl transferase
JTE88_RS00355	COG0228	four-way junction DNA binding
JTE88_RS00365	COG0791	NLP P60 protein
JTE88_RS00365	COG3883	PFAM NLP P60 protein
JTE88_RS00375	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
JTE88_RS00405	COG0705	Rhomboid family
JTE88_RS00415	COG3764	Sortase (surface protein transpeptidase)
JTE88_RS00440	COG1716	ATPase activity
JTE88_RS00445	COG1716	ATPase activity
JTE88_RS00465	COG2860	membrane
JTE88_RS00475	COG0328	RNA-DNA hybrid ribonuclease activity
JTE88_RS00490	COG1854	S-ribosylhomocysteine lyase activity
JTE88_RS00500	COG1780	Probably involved in ribonucleotide reductase function
JTE88_RS00505	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JTE88_RS00515	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JTE88_RS00520	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JTE88_RS00545	COG0765	amino acid transport
JTE88_RS00555	COG1643	Atp-dependent helicase
JTE88_RS00595	COG2188	Transcriptional regulator
JTE88_RS00620	COG2217	Heavy metal translocating P-type atpase
JTE88_RS00635	COG0586	Pfam SNARE associated Golgi protein
JTE88_RS00640	COG1950	PFAM Membrane protein of
JTE88_RS00660	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
JTE88_RS00665	COG0803	Belongs to the bacterial solute-binding protein 9 family
JTE88_RS00670	COG1121	(ABC) transporter
JTE88_RS00675	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JTE88_RS00680	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JTE88_RS00690	COG0717	Belongs to the dCTP deaminase family
JTE88_RS00695	COG2111	Na H antiporter
JTE88_RS00695	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JTE88_RS00705	COG0651	ATP synthesis coupled electron transport
JTE88_RS00720	COG1320	monovalent cation:proton antiporter activity
JTE88_RS00740	COG3842	ATPase activity
JTE88_RS00750	COG0395	ABC-type sugar transport system, permease component
JTE88_RS00755	COG1175	transmembrane transport
JTE88_RS00760	COG1653	transport
JTE88_RS00770	COG2814	Major facilitator Superfamily
JTE88_RS00785	COG0662	Cupin 2, conserved barrel domain protein
JTE88_RS00790	COG1505	serine-type exopeptidase activity
JTE88_RS00795	COG0443	Heat shock 70 kDa protein
JTE88_RS00800	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JTE88_RS00805	COG0484	heat shock protein binding
JTE88_RS00810	COG0789	Transcriptional regulator
JTE88_RS00845	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
JTE88_RS00850	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JTE88_RS00865	COG1113	amino acid transport
JTE88_RS00870	COG2801	Transposase and inactivated derivatives
JTE88_RS00880	COG2963	transposase activity
JTE88_RS00890	COG2963	transposase activity
JTE88_RS00900	COG2801	Transposase and inactivated derivatives
JTE88_RS00915	COG1260	myo-inositol-1-phosphate synthase
JTE88_RS00930	COG0300	oxidoreductase activity
JTE88_RS00940	COG0494	nUDIX hydrolase
JTE88_RS00975	COG0191	fructose-bisphosphate aldolase activity
JTE88_RS01025	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
JTE88_RS01030	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JTE88_RS01035	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JTE88_RS01110	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JTE88_RS01150	COG0306	phosphate transporter
JTE88_RS01160	COG1115	amino acid carrier protein
JTE88_RS01170	COG4044	May play a role in the intracellular transport of hydrophobic ligands
JTE88_RS01175	COG0354	folic acid binding
JTE88_RS01180	COG1490	D-aminoacyl-tRNA deacylase activity
JTE88_RS01190	COG0133	tryptophan synthase activity
JTE88_RS01195	COG2056	Na+-H+ antiporter family
JTE88_RS01200	COG0574	Belongs to the PEP-utilizing enzyme family
JTE88_RS01200	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JTE88_RS01205	COG2755	lipolytic protein G-D-S-L family
JTE88_RS01205	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JTE88_RS01230	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
JTE88_RS01235	COG2027	D-alanyl-D-alanine carboxypeptidase
JTE88_RS01245	COG0037	tRNA processing
JTE88_RS01250	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JTE88_RS01255	COG0302	gtp cyclohydrolase
JTE88_RS01260	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JTE88_RS01265	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JTE88_RS01300	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JTE88_RS01310	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JTE88_RS01315	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JTE88_RS01325	COG0247	lactate metabolic process
JTE88_RS01330	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
JTE88_RS01335	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JTE88_RS01345	COG1194	a g-specific adenine glycosylase
JTE88_RS01355	COG0477	Major facilitator Superfamily
JTE88_RS01365	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JTE88_RS01370	COG0569	domain protein
JTE88_RS01375	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JTE88_RS01395	COG0406	alpha-ribazole phosphatase activity
JTE88_RS01405	COG1575	Belongs to the MenA family. Type 1 subfamily
JTE88_RS01415	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JTE88_RS01420	COG4948	Mandelate Racemase Muconate Lactonizing
JTE88_RS01425	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
JTE88_RS01430	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JTE88_RS01440	COG2226	methyltransferase
JTE88_RS01445	COG0644	oxidoreductase
JTE88_RS01455	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JTE88_RS01460	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JTE88_RS01465	COG0649	NAD binding
JTE88_RS01475	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
JTE88_RS01480	COG1034	ATP synthesis coupled electron transport
JTE88_RS01485	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
JTE88_RS01490	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JTE88_RS01500	COG0713	ATP synthesis coupled electron transport
JTE88_RS01515	COG1007	ATP synthesis coupled electron transport
JTE88_RS01520	COG0142	geranyltranstransferase activity
JTE88_RS01525	COG0653	protein targeting
JTE88_RS01565	COG0419	ATPase involved in DNA repair
JTE88_RS01590	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JTE88_RS01600	COG2188	Transcriptional regulator
JTE88_RS01610	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
JTE88_RS01615	COG0363	glucosamine-6-phosphate deaminase activity
JTE88_RS01620	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JTE88_RS01625	COG1595	DNA-templated transcription, initiation
JTE88_RS01630	COG5662	AntiSigma factor
JTE88_RS01680	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JTE88_RS01685	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
JTE88_RS01695	COG0567	Dehydrogenase, E1 component
JTE88_RS01695	COG0508	dehydrogenase complex catalyzes the overall conversion of
JTE88_RS01700	COG1253	flavin adenine dinucleotide binding
JTE88_RS01710	COG0739	heme binding
JTE88_RS01715	COG0584	glycerophosphoryl diester phosphodiesterase
JTE88_RS01725	COG0018	arginyl-trna synthetase
JTE88_RS01745	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JTE88_RS01760	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JTE88_RS01770	COG0356	it plays a direct role in the translocation of protons across the membrane
JTE88_RS01775	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JTE88_RS01780	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JTE88_RS01785	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JTE88_RS01790	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JTE88_RS01795	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JTE88_RS01800	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JTE88_RS01805	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JTE88_RS01815	COG1637	Cleaves both 3' and 5' ssDNA extremities of branched DNA structures
JTE88_RS01850	COG1609	Transcriptional regulator
JTE88_RS01860	COG1175	transmembrane transport
JTE88_RS01865	COG3833	ABC-type maltose transport systems, permease component
JTE88_RS01875	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JTE88_RS01880	COG3281	Trehalose synthase
JTE88_RS01885	COG0366	Alpha amylase catalytic
JTE88_RS01890	COG0366	Alpha amylase catalytic
JTE88_RS01900	COG0058	SHG alpha-glucan phosphorylase activity
JTE88_RS01905	COG0180	Tryptophanyl-tRNA synthetase
JTE88_RS01910	COG0577	efflux transmembrane transporter activity
JTE88_RS01910	COG1136	(ABC) transporter
JTE88_RS01995	COG0477	Major facilitator Superfamily
JTE88_RS02005	COG2814	Major facilitator Superfamily
JTE88_RS02015	COG2816	NAD+ diphosphatase activity
JTE88_RS02035	COG3480	Lon protease (S16) C-terminal proteolytic domain
JTE88_RS02045	COG1615	UPF0182 protein
JTE88_RS02060	COG1725	Transcriptional regulator
JTE88_RS02105	COG1136	(ABC) transporter
JTE88_RS02125	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JTE88_RS02150	COG1136	(ABC) transporter
JTE88_RS02155	COG2197	response regulator
JTE88_RS02165	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JTE88_RS02170	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JTE88_RS02175	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JTE88_RS02180	COG0154	amidase activity
JTE88_RS02185	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JTE88_RS02210	COG2226	methyltransferase
JTE88_RS02220	COG2985	domain, Protein
JTE88_RS02220	COG0569	domain protein
JTE88_RS02230	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JTE88_RS02235	COG1882	Formate acetyltransferase
JTE88_RS02255	COG0789	Transcriptional regulator
JTE88_RS02260	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JTE88_RS02275	COG0577	efflux transmembrane transporter activity
JTE88_RS02275	COG1136	(ABC) transporter
JTE88_RS02310	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
JTE88_RS02350	COG1263	PTS System
JTE88_RS02350	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JTE88_RS02355	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JTE88_RS02365	COG2116	formate transmembrane transporter activity
JTE88_RS02385	COG3590	peptidase
JTE88_RS02395	COG1045	serine acetyltransferase
JTE88_RS02405	COG1739	Uncharacterized protein family UPF0029
JTE88_RS02425	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JTE88_RS02430	COG1121	(ABC) transporter
JTE88_RS02445	COG1966	Carbon starvation protein
JTE88_RS02465	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JTE88_RS02480	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JTE88_RS02485	COG0471	metal ion transport
JTE88_RS02490	COG1428	Deoxynucleoside kinase
JTE88_RS02495	COG0137	argininosuccinate synthase activity
JTE88_RS02500	COG0165	Argininosuccinate lyase
JTE88_RS02510	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JTE88_RS02615	COG2197	response regulator
JTE88_RS02625	COG1136	(ABC) transporter
JTE88_RS02655	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JTE88_RS02660	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JTE88_RS02665	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JTE88_RS02670	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JTE88_RS02690	COG0544	peptidyl-prolyl cis-trans isomerase activity
JTE88_RS02700	COG0740	serine-type endopeptidase activity
JTE88_RS02705	COG0740	serine-type endopeptidase activity
JTE88_RS02710	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JTE88_RS02715	COG1022	Amp-dependent synthetase and ligase
JTE88_RS02725	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JTE88_RS02735	COG1132	(ABC) transporter
JTE88_RS02740	COG1132	(ABC) transporter
JTE88_RS02745	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JTE88_RS02750	COG0285	dihydrofolate synthase activity
JTE88_RS02755	COG0105	UTP biosynthetic process
JTE88_RS02760	COG1461	Dihydroxyacetone kinase
JTE88_RS02765	COG1196	nuclear chromosome segregation
JTE88_RS02795	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JTE88_RS02805	COG1837	Belongs to the UPF0109 family
JTE88_RS02810	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JTE88_RS02820	COG0335	large ribosomal subunit rRNA binding
JTE88_RS02825	COG0681	Belongs to the peptidase S26 family
JTE88_RS02830	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JTE88_RS02840	COG0792	nuclease activity
JTE88_RS02855	COG4974	Belongs to the 'phage' integrase family
JTE88_RS02865	COG0052	Belongs to the universal ribosomal protein uS2 family
JTE88_RS02870	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JTE88_RS02885	COG0644	oxidoreductase
JTE88_RS02900	COG0477	Major facilitator Superfamily
JTE88_RS02915	COG0233	cytoplasmic translational termination
JTE88_RS02920	COG0575	Belongs to the CDS family
JTE88_RS02925	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JTE88_RS02935	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JTE88_RS02940	COG0750	zinc metalloprotease
JTE88_RS02945	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
JTE88_RS02955	COG0442	prolyl-tRNA aminoacylation
JTE88_RS02965	COG0779	Required for maturation of 30S ribosomal subunits
JTE88_RS02980	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JTE88_RS02985	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JTE88_RS02990	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JTE88_RS02995	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JTE88_RS03025	COG0577	efflux transmembrane transporter activity
JTE88_RS03025	COG1136	(ABC) transporter
JTE88_RS03030	COG0577	efflux transmembrane transporter activity
JTE88_RS03030	COG1136	(ABC) transporter
JTE88_RS03050	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JTE88_RS03055	COG1185	polyribonucleotide nucleotidyltransferase activity
JTE88_RS03065	COG0612	Peptidase, M16
JTE88_RS03075	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JTE88_RS03080	COG3842	ATPase activity
JTE88_RS03090	COG1840	ABC-type Fe3 transport system, periplasmic component
JTE88_RS03095	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
JTE88_RS03100	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JTE88_RS03105	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JTE88_RS03120	COG1132	(ABC) transporter
JTE88_RS03125	COG1132	(ABC) transporter
JTE88_RS03155	COG5002	protein histidine kinase activity
JTE88_RS03160	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JTE88_RS03165	COG1674	ftsk spoiiie
JTE88_RS03175	COG1546	Belongs to the CinA family
JTE88_RS03175	COG1058	Belongs to the CinA family
JTE88_RS03180	COG1396	sequence-specific DNA binding
JTE88_RS03200	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JTE88_RS03205	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JTE88_RS03210	COG2813	Specifically methylates the guanine in position
JTE88_RS03215	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JTE88_RS03225	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JTE88_RS03235	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JTE88_RS03240	COG0318	PFAM AMP-dependent synthetase and ligase
JTE88_RS03260	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JTE88_RS03270	COG2001	Belongs to the MraZ family
JTE88_RS03275	COG0275	rRNA processing
JTE88_RS03285	COG0768	penicillin binding
JTE88_RS03290	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JTE88_RS03300	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JTE88_RS03305	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JTE88_RS03310	COG0772	Belongs to the SEDS family
JTE88_RS03320	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JTE88_RS03330	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JTE88_RS03340	COG1799	cell septum assembly
JTE88_RS03390	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JTE88_RS03395	COG1121	(ABC) transporter
JTE88_RS03405	COG0423	glycine-tRNA ligase activity
JTE88_RS03425	COG1879	ABC-type sugar transport system periplasmic component
JTE88_RS03430	COG1129	ABC transporter
JTE88_RS03435	COG4211	Belongs to the binding-protein-dependent transport system permease family
JTE88_RS03445	COG0358	DNA primase activity
JTE88_RS03545	COG1090	epimerase
JTE88_RS03565	COG0009	L-threonylcarbamoyladenylate synthase
JTE88_RS03585	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JTE88_RS03615	COG1132	(ABC) transporter
JTE88_RS03630	COG1131	(ABC) transporter
JTE88_RS03660	COG1196	nuclear chromosome segregation
JTE88_RS03685	COG2353	YceI-like domain
JTE88_RS03695	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JTE88_RS03705	COG3022	response to hydroperoxide
JTE88_RS03725	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JTE88_RS03730	COG0174	glutamine synthetase
JTE88_RS03735	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JTE88_RS03745	COG0174	glutamine synthetase
JTE88_RS03760	COG0508	dehydrogenase complex catalyzes the overall conversion of
JTE88_RS03765	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JTE88_RS03775	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JTE88_RS03780	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JTE88_RS03830	COG0205	6-phosphofructokinase activity
JTE88_RS03835	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
JTE88_RS03840	COG2815	serine threonine protein kinase
JTE88_RS03840	COG0515	serine threonine protein kinase
JTE88_RS03855	COG0142	geranyltranstransferase activity
JTE88_RS03865	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JTE88_RS03870	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JTE88_RS03880	COG0187	DNA topoisomerase II activity
JTE88_RS03895	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JTE88_RS03910	COG1435	thymidine kinase activity
JTE88_RS03945	COG0569	domain protein
JTE88_RS03960	COG0300	oxidoreductase activity
JTE88_RS03965	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JTE88_RS03980	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JTE88_RS03985	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JTE88_RS03995	COG0138	bifunctional purine biosynthesis protein purh
JTE88_RS04000	COG0151	Belongs to the GarS family
JTE88_RS04010	COG2759	Belongs to the formate--tetrahydrofolate ligase family
JTE88_RS04015	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JTE88_RS04085	COG1760	l-serine dehydratase
JTE88_RS04090	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JTE88_RS04095	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JTE88_RS04120	COG0494	nUDIX hydrolase
JTE88_RS04130	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JTE88_RS04135	COG0632	four-way junction helicase activity
JTE88_RS04140	COG2255	four-way junction helicase activity
JTE88_RS04150	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JTE88_RS04155	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JTE88_RS04160	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JTE88_RS04165	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JTE88_RS04175	COG1196	nuclear chromosome segregation
JTE88_RS04185	COG0124	histidyl-tRNA synthetase
JTE88_RS04195	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JTE88_RS04210	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JTE88_RS04215	COG1376	ErfK ybiS ycfS ynhG family protein
JTE88_RS04225	COG2409	Drug exporters of the RND superfamily
JTE88_RS04235	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JTE88_RS04240	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JTE88_RS04245	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JTE88_RS04280	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JTE88_RS04285	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JTE88_RS04290	COG0194	GDP metabolic process
JTE88_RS04295	COG1758	RNA polymerase activity
JTE88_RS04305	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JTE88_RS04310	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JTE88_RS04315	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JTE88_RS04325	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JTE88_RS04330	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JTE88_RS04335	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JTE88_RS04380	COG1716	ATPase activity
JTE88_RS04400	COG1160	GTP binding
JTE88_RS04405	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JTE88_RS04415	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JTE88_RS04440	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JTE88_RS04445	COG0149	triose-phosphate isomerase activity
JTE88_RS04450	COG0126	phosphoglycerate kinase activity
JTE88_RS04455	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JTE88_RS04460	COG1481	regulation of sporulation
JTE88_RS04470	COG1660	Displays ATPase and GTPase activities
JTE88_RS04475	COG0322	excinuclease ABC activity
JTE88_RS04505	COG1136	(ABC) transporter
JTE88_RS04505	COG0577	efflux transmembrane transporter activity
JTE88_RS04510	COG0488	(ABC) transporter
JTE88_RS04525	COG0556	nucleotide-excision repair
JTE88_RS04530	COG2814	Major facilitator Superfamily
JTE88_RS04535	COG0237	dephospho-CoA kinase activity
JTE88_RS04535	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JTE88_RS04545	COG1136	(ABC) transporter
JTE88_RS04545	COG0577	efflux transmembrane transporter activity
JTE88_RS04565	COG0539	negative regulation of cytoplasmic translation
JTE88_RS04570	COG2226	methyltransferase
JTE88_RS04570	COG1073	alpha beta
JTE88_RS04595	COG0469	pyruvate kinase activity
JTE88_RS04600	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JTE88_RS04610	COG0638	Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine
JTE88_RS04620	COG4122	O-methyltransferase activity
JTE88_RS04625	COG1222	aaa ATPase
JTE88_RS04645	COG1968	undecaprenyl-diphosphatase activity
JTE88_RS04650	COG0667	Aldo Keto reductase
JTE88_RS04660	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JTE88_RS04700	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JTE88_RS04725	COG1119	ATPase activity
JTE88_RS04730	COG0297	glycogen (starch) synthase activity
JTE88_RS04745	COG0488	(ABC) transporter
JTE88_RS04755	COG2151	metal-sulfur cluster biosynthetic enzyme
JTE88_RS04760	COG0822	iron-sulfur transferase activity
JTE88_RS04765	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JTE88_RS04770	COG0396	ATPase activity
JTE88_RS04780	COG0719	Fe-S assembly protein
JTE88_RS04795	COG0494	nUDIX hydrolase
JTE88_RS04820	COG0497	DNA recombination
JTE88_RS04825	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JTE88_RS04840	COG0647	UMP catabolic process
JTE88_RS04900	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JTE88_RS04905	COG3949	Membrane
JTE88_RS04910	COG0778	Nitroreductase
JTE88_RS04915	COG1438	arginine binding
JTE88_RS04920	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JTE88_RS04925	COG0300	oxidoreductase activity
JTE88_RS04950	COG4608	Belongs to the ABC transporter superfamily
JTE88_RS04955	COG0444	Belongs to the ABC transporter superfamily
JTE88_RS04970	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JTE88_RS04975	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JTE88_RS04980	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JTE88_RS04985	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JTE88_RS05005	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JTE88_RS05010	COG1381	Involved in DNA repair and RecF pathway recombination
JTE88_RS05015	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JTE88_RS05025	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JTE88_RS05040	COG0484	heat shock protein binding
JTE88_RS05045	COG1420	regulation of RNA biosynthetic process
JTE88_RS05085	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JTE88_RS05090	COG0481	GTPase activity
JTE88_RS05110	COG0268	Binds directly to 16S ribosomal RNA
JTE88_RS05130	COG0433	COG0433 Predicted ATPase
JTE88_RS05135	COG2017	converts alpha-aldose to the beta-anomer
JTE88_RS05140	COG0495	leucyl-tRNA aminoacylation
JTE88_RS05165	COG0813	purine-nucleoside phosphorylase activity
JTE88_RS05175	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JTE88_RS05180	COG2011	ABC-type metal ion transport system permease component
JTE88_RS05190	COG1012	belongs to the aldehyde dehydrogenase family
JTE88_RS05195	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JTE88_RS05200	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
JTE88_RS05220	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JTE88_RS05220	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JTE88_RS05225	COG0540	Belongs to the ATCase OTCase family
JTE88_RS05235	COG0284	orotidine-5'-phosphate decarboxylase activity
JTE88_RS05240	COG0167	dihydroorotate dehydrogenase activity
JTE88_RS05245	COG0543	2 iron, 2 sulfur cluster binding
JTE88_RS05250	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JTE88_RS05255	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JTE88_RS05265	COG1757	Na H antiporter
JTE88_RS05270	COG0254	rRNA binding
JTE88_RS05280	COG0477	Major facilitator Superfamily
JTE88_RS05290	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JTE88_RS05295	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JTE88_RS05300	COG1597	lipid kinase activity
JTE88_RS05320	COG0659	secondary active sulfate transmembrane transporter activity
JTE88_RS05400	COG0588	phosphoglycerate mutase activity
JTE88_RS05405	COG0799	negative regulation of ribosome biogenesis
JTE88_RS05420	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JTE88_RS05430	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JTE88_RS05435	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JTE88_RS05440	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JTE88_RS05445	COG1530	ribonuclease E activity
JTE88_RS05450	COG1271	oxidase subunit
JTE88_RS05455	COG1294	oxidase, subunit
JTE88_RS05460	COG4988	ABC transporter
JTE88_RS05465	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JTE88_RS05480	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JTE88_RS05485	COG0571	ribonuclease III activity
JTE88_RS05500	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JTE88_RS05510	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JTE88_RS05515	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JTE88_RS05525	COG1181	Belongs to the D-alanine--D-alanine ligase family
JTE88_RS05535	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JTE88_RS05545	COG0438	transferase activity, transferring glycosyl groups
JTE88_RS05550	COG0339	signal peptide processing
JTE88_RS05590	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JTE88_RS05645	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JTE88_RS05650	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JTE88_RS05670	COG1234	tRNA 3'-trailer cleavage
JTE88_RS05675	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JTE88_RS05685	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
JTE88_RS05710	COG2985	domain, Protein
JTE88_RS05710	COG0569	domain protein
JTE88_RS05715	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
JTE88_RS05720	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JTE88_RS05725	COG2376	Dihydroxyacetone kinase
JTE88_RS05755	COG3842	ATPase activity
JTE88_RS05765	COG2271	Major facilitator Superfamily
JTE88_RS05770	COG0745	RESPONSE REGULATOR receiver
JTE88_RS05775	COG5002	protein histidine kinase activity
JTE88_RS05780	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JTE88_RS05785	COG0028	Belongs to the TPP enzyme family
JTE88_RS05810	COG1619	proteins homologs of microcin C7 resistance protein MccF
JTE88_RS05830	COG1595	DNA-templated transcription, initiation
JTE88_RS05865	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
JTE88_RS05880	COG4720	Psort location CytoplasmicMembrane, score
JTE88_RS05885	COG1122	ATPase activity
JTE88_RS05895	COG1418	mRNA catabolic process
JTE88_RS05900	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JTE88_RS05905	COG1121	(ABC) transporter
JTE88_RS05920	COG1725	Transcriptional regulator
JTE88_RS05925	COG1131	(ABC) transporter
JTE88_RS05935	COG1126	abc transporter atp-binding protein
JTE88_RS05940	COG0765	amino acid transport
JTE88_RS05945	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JTE88_RS05950	COG1114	Component of the transport system for branched-chain amino acids
JTE88_RS05965	COG1131	(ABC) transporter
JTE88_RS05970	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JTE88_RS05980	COG0730	response to heat
JTE88_RS05995	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JTE88_RS06000	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JTE88_RS06035	COG1132	(ABC) transporter
JTE88_RS06040	COG1132	(ABC) transporter
JTE88_RS06040	COG2375	cellular response to nickel ion
JTE88_RS06045	COG1129	ABC transporter
JTE88_RS06065	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JTE88_RS06085	COG0745	RESPONSE REGULATOR receiver
JTE88_RS06090	COG5002	protein histidine kinase activity
JTE88_RS06110	COG0640	Transcriptional regulator
JTE88_RS06155	COG0739	heme binding
JTE88_RS06160	COG2177	Part of the ABC transporter FtsEX involved in
JTE88_RS06165	COG2884	Cell division ATP-binding protein ftsE
JTE88_RS06170	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
JTE88_RS06225	COG2354	Protein conserved in bacteria
JTE88_RS06240	COG2095	MarC family integral membrane protein
JTE88_RS06250	COG0006	proline dipeptidase activity
JTE88_RS06265	COG0489	protein tyrosine kinase activity
JTE88_RS06265	COG2151	metal-sulfur cluster biosynthetic enzyme
JTE88_RS06275	COG0805	protein transport
JTE88_RS06280	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JTE88_RS06295	COG0315	cyclic pyranopterin monophosphate synthase activity
JTE88_RS06320	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JTE88_RS06330	COG3381	protein complex oligomerization
JTE88_RS06340	COG0437	4 iron, 4 sulfur cluster binding
JTE88_RS06345	COG0243	molybdopterin cofactor binding
JTE88_RS06385	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JTE88_RS06410	COG1079	Belongs to the binding-protein-dependent transport system permease family
JTE88_RS06415	COG4603	Belongs to the binding-protein-dependent transport system permease family
JTE88_RS06420	COG3845	ABC transporter
JTE88_RS06425	COG1744	ABC transporter substrate-binding protein PnrA-like
JTE88_RS06445	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JTE88_RS06450	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JTE88_RS06460	COG0110	maltose O-acetyltransferase activity
JTE88_RS06465	COG3012	SEC-C Motif Domain Protein
JTE88_RS06470	COG0039	L-malate dehydrogenase activity
JTE88_RS06485	COG0166	Belongs to the GPI family
JTE88_RS06495	COG0205	6-phosphofructokinase activity
JTE88_RS06520	COG0045	succinate-CoA ligase (ADP-forming) activity
JTE88_RS06525	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JTE88_RS06525	COG2755	lipolytic protein G-D-S-L family
JTE88_RS06540	COG0789	Transcriptional regulator
JTE88_RS06545	COG0477	Major facilitator Superfamily
JTE88_RS06580	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JTE88_RS06600	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JTE88_RS06600	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
JTE88_RS06660	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JTE88_RS06690	COG0519	Catalyzes the synthesis of GMP from XMP
JTE88_RS06690	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JTE88_RS06700	COG0564	pseudouridine synthase activity
JTE88_RS06705	COG0280	phosphate acetyltransferase
JTE88_RS06705	COG0857	belongs to the CobB CobQ family
JTE88_RS06710	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JTE88_RS06735	COG0114	fumarate hydratase activity
JTE88_RS06740	COG0516	GMP reductase activity
JTE88_RS06750	COG3634	alkyl hydroperoxide reductase activity
JTE88_RS06770	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JTE88_RS06785	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JTE88_RS06800	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JTE88_RS06805	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JTE88_RS06810	COG1053	succinate dehydrogenase
JTE88_RS06820	COG0456	acetyltransferase
JTE88_RS06835	COG0802	atpase or kinase
JTE88_RS06840	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JTE88_RS06845	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JTE88_RS06850	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JTE88_RS06855	COG1072	(Pantothenic acid kinase))
JTE88_RS06865	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JTE88_RS06870	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JTE88_RS06875	COG0101	tRNA pseudouridine synthase activity
JTE88_RS06880	COG1940	carbohydrate kinase activity
JTE88_RS06885	COG0203	ribosomal protein L17
JTE88_RS06890	COG0202	RNA polymerase activity
JTE88_RS06900	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JTE88_RS06905	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JTE88_RS06910	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JTE88_RS06915	COG0024	Methionine aminopeptidase
JTE88_RS06920	COG0563	adenylate kinase activity
JTE88_RS06925	COG0201	protein transport
JTE88_RS06930	COG0200	Binds to the 23S rRNA
JTE88_RS06935	COG1841	ribosomal large subunit assembly
JTE88_RS06940	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JTE88_RS06950	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JTE88_RS06955	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JTE88_RS06960	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JTE88_RS06965	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JTE88_RS06970	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JTE88_RS06975	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JTE88_RS06995	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JTE88_RS07000	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JTE88_RS07005	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JTE88_RS07010	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JTE88_RS07015	COG0089	rRNA binding
JTE88_RS07020	COG0088	Forms part of the polypeptide exit tunnel
JTE88_RS07025	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JTE88_RS07030	COG0051	transcription antitermination factor activity, RNA binding
JTE88_RS07035	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JTE88_RS07040	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JTE88_RS07045	COG0049	tRNA binding
JTE88_RS07050	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JTE88_RS07055	COG0840	transmembrane signaling receptor activity
JTE88_RS07060	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JTE88_RS07065	COG0085	RNA polymerase activity
JTE88_RS07070	COG0222	ribosome binding
JTE88_RS07075	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JTE88_RS07080	COG0572	uridine kinase
JTE88_RS07085	COG0081	regulation of translation
JTE88_RS07090	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JTE88_RS07110	COG0436	Aminotransferase
JTE88_RS07125	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JTE88_RS07140	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JTE88_RS07145	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JTE88_RS07165	COG1666	GTP binding
JTE88_RS07180	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JTE88_RS07195	COG5000	phosphorelay sensor kinase activity
JTE88_RS07195	COG5002	protein histidine kinase activity
JTE88_RS07200	COG0745	RESPONSE REGULATOR receiver
JTE88_RS07235	COG1316	TRANSCRIPTIONal
JTE88_RS07240	COG1316	TRANSCRIPTIONal
JTE88_RS07245	COG2205	protein histidine kinase activity
JTE88_RS07250	COG0745	RESPONSE REGULATOR receiver
JTE88_RS07265	COG0424	maF-like protein
JTE88_RS07290	COG1217	gtp-binding protein TYPA
JTE88_RS07300	COG1132	(ABC) transporter
JTE88_RS07305	COG1132	(ABC) transporter
JTE88_RS07330	COG0321	lipoyl(octanoyl) transferase activity
JTE88_RS07335	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
JTE88_RS07340	COG0318	PFAM AMP-dependent synthetase and ligase
JTE88_RS07345	COG1362	aminopeptidase activity
JTE88_RS07360	COG2838	Isocitrate dehydrogenase
JTE88_RS07370	COG0039	L-malate dehydrogenase activity
JTE88_RS07375	COG3971	2-oxopent-4-enoate hydratase activity
JTE88_RS07390	COG2195	Cleaves the N-terminal amino acid of tripeptides
JTE88_RS07405	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JTE88_RS07410	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JTE88_RS07435	COG0783	Belongs to the Dps family
JTE88_RS07440	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JTE88_RS07445	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JTE88_RS07550	COG2226	methyltransferase
JTE88_RS07565	COG3177	Filamentation induced by cAMP protein fic
JTE88_RS07575	COG0733	neurotransmitter:sodium symporter activity
JTE88_RS07595	COG0366	Alpha amylase catalytic
JTE88_RS07640	COG4115	mRNA cleavage
JTE88_RS07645	COG2161	toxin-antitoxin pair type II binding
JTE88_RS07650	COG0012	GTP binding
JTE88_RS07655	COG1322	Protein conserved in bacteria
JTE88_RS07660	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JTE88_RS07670	COG1722	exodeoxyribonuclease VII activity
JTE88_RS07680	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JTE88_RS07690	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JTE88_RS07695	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JTE88_RS07710	COG1131	(ABC) transporter
JTE88_RS07725	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JTE88_RS07765	COG0148	phosphopyruvate hydratase activity
JTE88_RS07775	COG0193	aminoacyl-tRNA hydrolase activity
JTE88_RS07780	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JTE88_RS07790	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JTE88_RS07800	COG1309	transcriptional regulator
JTE88_RS07805	COG4152	abc transporter atp-binding protein
JTE88_RS07810	COG1668	transmembrane transport
JTE88_RS07825	COG0488	(ABC) transporter
JTE88_RS07830	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JTE88_RS07835	COG2190	(PTS) system
JTE88_RS07840	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JTE88_RS07840	COG1263	PTS System
JTE88_RS07845	COG3711	transcriptional antiterminator
JTE88_RS07850	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JTE88_RS07860	COG0084	hydrolase, TatD family'
JTE88_RS07865	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JTE88_RS07870	COG1335	isochorismatase
JTE88_RS07875	COG2409	Drug exporters of the RND superfamily
JTE88_RS07890	COG1131	(ABC) transporter
JTE88_RS07900	COG4585	Histidine kinase
JTE88_RS07905	COG2197	response regulator
JTE88_RS07935	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JTE88_RS07945	COG1970	mechanosensitive ion channel activity
JTE88_RS07960	COG1054	Belongs to the UPF0176 family
JTE88_RS07975	COG0791	NLP P60 protein
JTE88_RS07985	COG2252	PERMEase
JTE88_RS08000	COG1278	Cold shock
JTE88_RS08010	COG1842	Phage shock protein A
JTE88_RS08020	COG0745	RESPONSE REGULATOR receiver
JTE88_RS08025	COG2205	protein histidine kinase activity
JTE88_RS08035	COG4221	oxidoreductase activity
JTE88_RS08050	COG0459	protein refolding
JTE88_RS08065	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JTE88_RS08080	COG1063	alcohol dehydrogenase
JTE88_RS08085	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JTE88_RS08095	COG1115	amino acid carrier protein
JTE88_RS08110	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JTE88_RS08110	COG0515	serine threonine protein kinase
JTE88_RS08115	COG3842	ATPase activity
JTE88_RS08125	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JTE88_RS08155	COG2233	PERMEase
JTE88_RS08170	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JTE88_RS08175	COG0215	cysteine-tRNA ligase activity
JTE88_RS08185	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
JTE88_RS08195	COG1329	Transcriptional regulator
JTE88_RS08200	COG0588	phosphoglycerate mutase activity
JTE88_RS08205	COG3304	Inner membrane component domain
JTE88_RS08210	COG0446	pyridine nucleotide-disulphide oxidoreductase
JTE88_RS08300	COG3843	relaxase mobilization nuclease domain protein
JTE88_RS08340	COG0739	heme binding
JTE88_RS08340	COG1196	nuclear chromosome segregation
JTE88_RS08340	COG0741	lytic transglycosylase activity
JTE88_RS08390	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JTE88_RS08395	COG1754	DNA topoisomerase type I activity
JTE88_RS08395	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JTE88_RS08400	COG2890	protein-(glutamine-N5) methyltransferase activity
JTE88_RS08415	COG1111	helicase
JTE88_RS08415	COG1205	dead DEAH box helicase
JTE88_RS08460	COG0596	Alpha beta hydrolase
JTE88_RS08470	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JTE88_RS08490	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JTE88_RS08505	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JTE88_RS08515	COG0738	Major facilitator superfamily
JTE88_RS08520	COG2390	Transcriptional regulator
JTE88_RS08540	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JTE88_RS08545	COG4868	Belongs to the UPF0371 family
JTE88_RS08550	COG0242	peptide deformylase activity
JTE88_RS08580	COG0326	Molecular chaperone. Has ATPase activity
JTE88_RS08630	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JTE88_RS08655	COG1597	lipid kinase activity
JTE88_RS08655	COG1803	Methylglyoxal synthase
JTE88_RS08660	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JTE88_RS08665	COG0561	phosphatase activity
JTE88_RS08745	COG1518	maintenance of DNA repeat elements
JTE88_RS08820	COG1643	Atp-dependent helicase
JTE88_RS08835	COG0343	queuine tRNA-ribosyltransferase activity
JTE88_RS08855	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JTE88_RS08855	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JTE88_RS08865	COG0656	L-ascorbic acid biosynthetic process
JTE88_RS08870	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
JTE88_RS08875	COG0305	Participates in initiation and elongation during chromosome replication
JTE88_RS08895	COG0359	binds to the 23S rRNA
JTE88_RS08900	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JTE88_RS08910	COG0360	Binds together with S18 to 16S ribosomal RNA
JTE88_RS08915	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JTE88_RS08920	COG0628	permease
JTE88_RS08930	COG0617	tRNA 3'-terminal CCA addition
JTE88_RS08950	COG0492	ferredoxin-NADP+ reductase activity
JTE88_RS08960	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JTE88_RS08975	COG0357	Ribosomal RNA small subunit methyltransferase G
JTE88_RS08980	COG1847	R3H domain protein
JTE88_RS08985	COG0706	membrane insertase activity
JTE88_RS08990	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
JTE88_RS09000	COG0230	Belongs to the bacterial ribosomal protein bL34 family