locus-tag class description JRI60_RS00005 PF13932 GidA associated domain JRI60_RS00005 PF01134 Glucose inhibited division protein A JRI60_RS00010 PF02527 rRNA small subunit methyltransferase G JRI60_RS00020 PF13167 GTP-binding GTPase N-terminal JRI60_RS00020 PF01926 50S ribosome-binding GTPase JRI60_RS00020 PF16360 GTP-binding GTPase Middle Region JRI60_RS00030 PF13614 AAA domain JRI60_RS00035 PF17762 HTH domain found in ParB protein JRI60_RS00035 PF02195 ParB-like nuclease domain JRI60_RS00050 PF07729 FCD domain JRI60_RS00050 PF00392 Bacterial regulatory proteins, gntR family JRI60_RS00055 PF10017 Histidine-specific methyltransferase, SAM-dependent JRI60_RS00060 PF12867 DinB superfamily JRI60_RS00060 PF03781 Sulfatase-modifying factor enzyme 1 JRI60_RS00075 PF00571 CBS domain JRI60_RS00075 PF02163 Peptidase family M50 JRI60_RS00080 PF00571 CBS domain JRI60_RS00115 PF12697 Alpha/beta hydrolase family JRI60_RS00135 PF00069 Protein kinase domain JRI60_RS00135 PF07238 PilZ domain JRI60_RS00155 PF03773 Predicted permease JRI60_RS00175 PF13247 4Fe-4S dicluster domain JRI60_RS00175 PF00037 4Fe-4S binding domain JRI60_RS00205 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JRI60_RS00205 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JRI60_RS00210 PF00510 Cytochrome c oxidase subunit III JRI60_RS00210 PF00115 Cytochrome C and Quinol oxidase polypeptide I JRI60_RS00215 PF00510 Cytochrome c oxidase subunit III JRI60_RS00245 PF13302 Acetyltransferase (GNAT) domain JRI60_RS00250 PF00392 Bacterial regulatory proteins, gntR family JRI60_RS00250 PF00155 Aminotransferase class I and II JRI60_RS00255 PF02627 Carboxymuconolactone decarboxylase family JRI60_RS00270 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS00270 PF00043 Glutathione S-transferase, C-terminal domain JRI60_RS00335 PF00264 Common central domain of tyrosinase JRI60_RS00345 PF00005 ABC transporter JRI60_RS00400 PF01425 Amidase JRI60_RS00405 PF17755 UvrA DNA-binding domain JRI60_RS00410 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS00430 PF10851 Protein of unknown function (DUF2652) JRI60_RS00445 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS00450 PF00106 short chain dehydrogenase JRI60_RS00475 PF08719 Domain of unknown function (DUF1768) JRI60_RS00480 PF12419 SNF2 Helicase protein JRI60_RS00480 PF00271 Helicase conserved C-terminal domain JRI60_RS00480 PF00176 SNF2 family N-terminal domain JRI60_RS00490 PF01494 FAD binding domain JRI60_RS00505 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_RS00535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS00535 PF03466 LysR substrate binding domain JRI60_RS00540 PF03466 LysR substrate binding domain JRI60_RS00540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS00550 PF03466 LysR substrate binding domain JRI60_RS00550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS00555 PF00248 Aldo/keto reductase family JRI60_RS00560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JRI60_RS00560 PF00384 Molybdopterin oxidoreductase JRI60_RS00560 PF01568 Molydopterin dinucleotide binding domain JRI60_RS00585 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS00585 PF16859 Tetracyclin repressor-like, C-terminal domain JRI60_RS00590 PF12680 SnoaL-like domain JRI60_RS00595 PF01370 NAD dependent epimerase/dehydratase family JRI60_RS00610 PF01068 ATP dependent DNA ligase domain JRI60_RS00610 PF04679 ATP dependent DNA ligase C terminal region JRI60_RS00610 PF13298 DNA polymerase Ligase (LigD) JRI60_RS00615 PF04679 ATP dependent DNA ligase C terminal region JRI60_RS00615 PF01068 ATP dependent DNA ligase domain JRI60_RS00630 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS00630 PF00672 HAMP domain JRI60_RS00630 PF18698 Histidine kinase sensor domain JRI60_RS00645 PF00069 Protein kinase domain JRI60_RS00655 PF00672 HAMP domain JRI60_RS00655 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS00655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS00680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS00680 PF00072 Response regulator receiver domain JRI60_RS00680 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS00680 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_RS00695 PF01590 GAF domain JRI60_RS00695 PF00360 Phytochrome region JRI60_RS00695 PF08446 PAS fold JRI60_RS00695 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS00695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS00700 PF01209 ubiE/COQ5 methyltransferase family JRI60_RS00715 PF03352 Methyladenine glycosylase JRI60_RS00715 PF13302 Acetyltransferase (GNAT) domain JRI60_RS00715 PF00958 GMP synthase C terminal domain JRI60_RS00715 PF00117 Glutamine amidotransferase class-I JRI60_RS00715 PF13673 Acetyltransferase (GNAT) domain JRI60_RS00720 PF07683 Cobalamin synthesis protein cobW C-terminal domain JRI60_RS00720 PF02492 CobW/HypB/UreG, nucleotide-binding domain JRI60_RS00725 PF00375 Sodium:dicarboxylate symporter family JRI60_RS00755 PF00857 Isochorismatase family JRI60_RS00825 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS00840 PF00005 ABC transporter JRI60_RS00845 PF13472 GDSL-like Lipase/Acylhydrolase family JRI60_RS00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS00855 PF03466 LysR substrate binding domain JRI60_RS00865 PF06983 3-demethylubiquinone-9 3-methyltransferase JRI60_RS00885 PF02013 Cellulose or protein binding domain JRI60_RS00885 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_RS00910 PF00106 short chain dehydrogenase JRI60_RS00915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JRI60_RS00915 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JRI60_RS00925 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS00930 PF04229 GrpB protein JRI60_RS00945 PF01047 MarR family JRI60_RS00950 PF00106 short chain dehydrogenase JRI60_RS00965 PF12833 Helix-turn-helix domain JRI60_RS00970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JRI60_RS00975 PF00135 Carboxylesterase family JRI60_RS00990 PF07690 Major Facilitator Superfamily JRI60_RS00995 PF00455 DeoR C terminal sensor domain JRI60_RS00995 PF08220 DeoR-like helix-turn-helix domain JRI60_RS01000 PF00202 Aminotransferase class-III JRI60_RS01010 PF00107 Zinc-binding dehydrogenase JRI60_RS01010 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS01020 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_RS01020 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_RS01020 PF14310 Fibronectin type III-like domain JRI60_RS01040 PF00248 Aldo/keto reductase family JRI60_RS01045 PF01638 HxlR-like helix-turn-helix JRI60_RS01055 PF00199 Catalase JRI60_RS01075 PF01547 Bacterial extracellular solute-binding protein JRI60_RS01080 PF13802 Galactose mutarotase-like JRI60_RS01080 PF16338 Domain of unknown function (DUF4968) JRI60_RS01080 PF17137 Domain of unknown function (DUF5110) JRI60_RS01080 PF01055 Glycosyl hydrolases family 31 JRI60_RS01110 PF00561 alpha/beta hydrolase fold JRI60_RS01135 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS01135 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS01135 PF03413 Peptidase propeptide and YPEB domain JRI60_RS01135 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS01150 PF03412 Peptidase C39 family JRI60_RS01150 PF00005 ABC transporter JRI60_RS01150 PF00664 ABC transporter transmembrane region JRI60_RS01170 PF00069 Protein kinase domain JRI60_RS01170 PF03793 PASTA domain JRI60_RS01185 PF13194 Domain of unknown function (DUF4010) JRI60_RS01200 PF04754 Putative transposase, YhgA-like JRI60_RS01210 PF07690 Major Facilitator Superfamily JRI60_RS01235 PF00892 EamA-like transporter family JRI60_RS01245 PF01070 FMN-dependent dehydrogenase JRI60_RS01265 PF00248 Aldo/keto reductase family JRI60_RS01270 PF03734 L,D-transpeptidase catalytic domain JRI60_RS01275 PF00248 Aldo/keto reductase family JRI60_RS01280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS01280 PF17202 Single cache domain 3 JRI60_RS01280 PF00672 HAMP domain JRI60_RS01305 PF07859 alpha/beta hydrolase fold JRI60_RS01310 PF00593 TonB dependent receptor JRI60_RS01310 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS01315 PF03929 PepSY-associated TM region JRI60_RS01330 PF04101 Glycosyltransferase family 28 C-terminal domain JRI60_RS01335 PF03793 PASTA domain JRI60_RS01335 PF00069 Protein kinase domain JRI60_RS01340 PF00067 Cytochrome P450 JRI60_RS01345 PF09265 Cytokinin dehydrogenase 1, FAD and cytokinin binding JRI60_RS01345 PF01565 FAD binding domain JRI60_RS01350 PF01627 Hpt domain JRI60_RS01350 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS01350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS01350 PF00672 HAMP domain JRI60_RS01350 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_RS01350 PF00072 Response regulator receiver domain JRI60_RS01360 PF00067 Cytochrome P450 JRI60_RS01365 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS01365 PF00550 Phosphopantetheine attachment site JRI60_RS01365 PF00501 AMP-binding enzyme JRI60_RS01365 PF00550 Phosphopantetheine attachment site JRI60_RS01365 PF00668 Condensation domain JRI60_RS01365 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS01365 PF00501 AMP-binding enzyme JRI60_RS01365 PF00668 Condensation domain JRI60_RS01370 PF00550 Phosphopantetheine attachment site JRI60_RS01370 PF00501 AMP-binding enzyme JRI60_RS01370 PF00668 Condensation domain JRI60_RS01370 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS01375 PF07730 Histidine kinase JRI60_RS01375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS01375 PF13492 GAF domain JRI60_RS01375 PF13185 GAF domain JRI60_RS01380 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS01380 PF00072 Response regulator receiver domain JRI60_RS01400 PF08386 TAP-like protein JRI60_RS01400 PF00561 alpha/beta hydrolase fold JRI60_RS01415 PF00069 Protein kinase domain JRI60_RS01415 PF03793 PASTA domain JRI60_RS01425 PF00753 Metallo-beta-lactamase superfamily JRI60_RS01445 PF00069 Protein kinase domain JRI60_RS01450 PF03129 Anticodon binding domain JRI60_RS01450 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JRI60_RS01460 PF01979 Amidohydrolase family JRI60_RS01475 PF00459 Inositol monophosphatase family JRI60_RS01485 PF17863 AAA lid domain JRI60_RS01485 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_RS01495 PF12728 Helix-turn-helix domain JRI60_RS01570 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS01580 PF01063 Amino-transferase class IV JRI60_RS01585 PF00392 Bacterial regulatory proteins, gntR family JRI60_RS01585 PF00155 Aminotransferase class I and II JRI60_RS01610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JRI60_RS01610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JRI60_RS01610 PF00205 Thiamine pyrophosphate enzyme, central domain JRI60_RS01615 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS01615 PF13823 Alcohol dehydrogenase GroES-associated JRI60_RS01615 PF00107 Zinc-binding dehydrogenase JRI60_RS01630 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS01630 PF00672 HAMP domain JRI60_RS01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS01630 PF18698 Histidine kinase sensor domain JRI60_RS01630 PF00989 PAS fold JRI60_RS01635 PF00067 Cytochrome P450 JRI60_RS01640 PF04116 Fatty acid hydroxylase superfamily JRI60_RS01650 PF01494 FAD binding domain JRI60_RS01655 PF12833 Helix-turn-helix domain JRI60_RS01655 PF02311 AraC-like ligand binding domain JRI60_RS01685 PF00483 Nucleotidyl transferase JRI60_RS01710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JRI60_RS01710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JRI60_RS01710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JRI60_RS01710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JRI60_RS01715 PF00067 Cytochrome P450 JRI60_RS01730 PF02634 FdhD/NarQ family JRI60_RS01735 PF03205 Molybdopterin guanine dinucleotide synthesis protein B JRI60_RS01740 PF00994 Probable molybdopterin binding domain JRI60_RS01740 PF03454 MoeA C-terminal region (domain IV) JRI60_RS01740 PF03453 MoeA N-terminal region (domain I and II) JRI60_RS01745 PF12804 MobA-like NTP transferase domain JRI60_RS01775 PF00561 alpha/beta hydrolase fold JRI60_RS01805 PF07238 PilZ domain JRI60_RS01805 PF00069 Protein kinase domain JRI60_RS01815 PF01565 FAD binding domain JRI60_RS01815 PF02913 FAD linked oxidases, C-terminal domain JRI60_RS01820 PF07714 Protein tyrosine kinase JRI60_RS01830 PF00072 Response regulator receiver domain JRI60_RS01830 PF02954 Bacterial regulatory protein, Fis family JRI60_RS01830 PF00158 Sigma-54 interaction domain JRI60_RS01855 PF13247 4Fe-4S dicluster domain JRI60_RS01855 PF12800 4Fe-4S binding domain JRI60_RS01890 PF00106 short chain dehydrogenase JRI60_RS01900 PF01205 Uncharacterized protein family UPF0029 JRI60_RS01900 PF09186 Domain of unknown function (DUF1949) JRI60_RS01910 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS01910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JRI60_RS01935 PF01619 Proline dehydrogenase JRI60_RS01940 PF00561 alpha/beta hydrolase fold JRI60_RS01960 PF03301 Tryptophan 2,3-dioxygenase JRI60_RS01985 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS01985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS01990 PF00072 Response regulator receiver domain JRI60_RS01990 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS02000 PF00582 Universal stress protein family JRI60_RS02015 PF01661 Macro domain JRI60_RS02025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS02025 PF09308 LuxQ, periplasmic JRI60_RS02025 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS02025 PF00072 Response regulator receiver domain JRI60_RS02030 PF00182 Chitinase class I JRI60_RS02060 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_RS02060 PF00571 CBS domain JRI60_RS02065 PF00067 Cytochrome P450 JRI60_RS02070 PF17886 HSP20-like domain found in ArsA JRI60_RS02070 PF02374 Anion-transporting ATPase JRI60_RS02075 PF02374 Anion-transporting ATPase JRI60_RS02085 PF00672 HAMP domain JRI60_RS02085 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS02085 PF18698 Histidine kinase sensor domain JRI60_RS02085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS02095 PF00596 Class II Aldolase and Adducin N-terminal domain JRI60_RS02100 PF01008 Initiation factor 2 subunit family JRI60_RS02105 PF01048 Phosphorylase superfamily JRI60_RS02120 PF08271 TFIIB zinc-binding JRI60_RS02150 PF07883 Cupin domain JRI60_RS02155 PF03466 LysR substrate binding domain JRI60_RS02155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS02170 PF00067 Cytochrome P450 JRI60_RS02175 PF00155 Aminotransferase class I and II JRI60_RS02220 PF01207 Dihydrouridine synthase (Dus) JRI60_RS02235 PF00753 Metallo-beta-lactamase superfamily JRI60_RS02250 PF09587 Bacterial capsule synthesis protein PGA_cap JRI60_RS02275 PF07690 Major Facilitator Superfamily JRI60_RS02290 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS02290 PF14497 Glutathione S-transferase, C-terminal domain JRI60_RS02300 PF03746 LamB/YcsF family JRI60_RS02305 PF02626 Carboxyltransferase domain, subdomain A and B JRI60_RS02320 PF00480 ROK family JRI60_RS02325 PF13407 Periplasmic binding protein domain JRI60_RS02340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS02340 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS02340 PF08446 PAS fold JRI60_RS02340 PF00360 Phytochrome region JRI60_RS02340 PF01590 GAF domain JRI60_RS02345 PF00456 Transketolase, thiamine diphosphate binding domain JRI60_RS02345 PF02780 Transketolase, C-terminal domain JRI60_RS02345 PF02779 Transketolase, pyrimidine binding domain JRI60_RS02360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS02360 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS02390 PF00072 Response regulator receiver domain JRI60_RS02390 PF00158 Sigma-54 interaction domain JRI60_RS02390 PF02954 Bacterial regulatory protein, Fis family JRI60_RS02405 PF00075 RNase H JRI60_RS02415 PF00107 Zinc-binding dehydrogenase JRI60_RS02415 PF16884 N-terminal domain of oxidoreductase JRI60_RS02425 PF00067 Cytochrome P450 JRI60_RS02425 PF00258 Flavodoxin JRI60_RS02425 PF00667 FAD binding domain JRI60_RS02425 PF00175 Oxidoreductase NAD-binding domain JRI60_RS02430 PF00067 Cytochrome P450 JRI60_RS02435 PF00264 Common central domain of tyrosinase JRI60_RS02440 PF00149 Calcineurin-like phosphoesterase JRI60_RS02440 PF02872 5'-nucleotidase, C-terminal domain JRI60_RS02460 PF00561 alpha/beta hydrolase fold JRI60_RS02465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS02465 PF00989 PAS fold JRI60_RS02465 PF17203 Single cache domain 3 JRI60_RS02465 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JRI60_RS02475 PF01327 Polypeptide deformylase JRI60_RS02490 PF01590 GAF domain JRI60_RS02490 PF02954 Bacterial regulatory protein, Fis family JRI60_RS02490 PF00158 Sigma-54 interaction domain JRI60_RS02495 PF00120 Glutamine synthetase, catalytic domain JRI60_RS02495 PF03951 Glutamine synthetase, beta-Grasp domain JRI60_RS02500 PF07995 Glucose / Sorbosone dehydrogenase JRI60_RS02515 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_RS02515 PF00128 Alpha amylase, catalytic domain JRI60_RS02515 PF18390 Glycogen debranching enzyme C-terminal domain JRI60_RS02550 PF01593 Flavin containing amine oxidoreductase JRI60_RS02555 PF00106 short chain dehydrogenase JRI60_RS02560 PF13460 NAD(P)H-binding JRI60_RS02560 PF11066 Protein of unknown function (DUF2867) JRI60_RS02565 PF00067 Cytochrome P450 JRI60_RS02620 PF00072 Response regulator receiver domain JRI60_RS02620 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS02620 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_RS02635 PF01266 FAD dependent oxidoreductase JRI60_RS02635 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JRI60_RS02640 PF00082 Subtilase family JRI60_RS02650 PF08281 Sigma-70, region 4 JRI60_RS02650 PF04542 Sigma-70 region 2 JRI60_RS02665 PF13286 Phosphohydrolase-associated domain JRI60_RS02665 PF01966 HD domain JRI60_RS02675 PF01510 N-acetylmuramoyl-L-alanine amidase JRI60_RS02685 PF00067 Cytochrome P450 JRI60_RS02700 PF00202 Aminotransferase class-III JRI60_RS02725 PF13673 Acetyltransferase (GNAT) domain JRI60_RS02725 PF04229 GrpB protein JRI60_RS02730 PF00561 alpha/beta hydrolase fold JRI60_RS02735 PF00561 alpha/beta hydrolase fold JRI60_RS02740 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS02745 PF00144 Beta-lactamase JRI60_RS02785 PF02954 Bacterial regulatory protein, Fis family JRI60_RS02785 PF06505 Activator of aromatic catabolism JRI60_RS02785 PF02830 V4R domain JRI60_RS02785 PF00158 Sigma-54 interaction domain JRI60_RS02800 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_RS02805 PF00067 Cytochrome P450 JRI60_RS02810 PF00384 Molybdopterin oxidoreductase JRI60_RS02810 PF01568 Molydopterin dinucleotide binding domain JRI60_RS02810 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JRI60_RS02830 PF03193 RsgA GTPase JRI60_RS02850 PF00144 Beta-lactamase JRI60_RS02860 PF00106 short chain dehydrogenase JRI60_RS02885 PF13380 CoA binding domain JRI60_RS02885 PF13607 Succinyl-CoA ligase like flavodoxin domain JRI60_RS02890 PF03466 LysR substrate binding domain JRI60_RS02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS02895 PF03601 Conserved hypothetical protein 698 JRI60_RS02920 PF01593 Flavin containing amine oxidoreductase JRI60_RS02935 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS02935 PF03707 Bacterial signalling protein N terminal repeat JRI60_RS02935 PF00563 EAL domain JRI60_RS02945 PF08281 Sigma-70, region 4 JRI60_RS02945 PF04542 Sigma-70 region 2 JRI60_RS02950 PF00072 Response regulator receiver domain JRI60_RS02955 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS02955 PF13191 AAA ATPase domain JRI60_RS02975 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS02975 PF13191 AAA ATPase domain JRI60_RS03010 PF00313 'Cold-shock' DNA-binding domain JRI60_RS03015 PF10990 Protein of unknown function (DUF2809) JRI60_RS03045 PF00158 Sigma-54 interaction domain JRI60_RS03045 PF00072 Response regulator receiver domain JRI60_RS03050 PF00069 Protein kinase domain JRI60_RS03060 PF07238 PilZ domain JRI60_RS03060 PF00069 Protein kinase domain JRI60_RS03100 PF05368 NmrA-like family JRI60_RS03105 PF01638 HxlR-like helix-turn-helix JRI60_RS03120 PF00732 GMC oxidoreductase JRI60_RS03120 PF05199 GMC oxidoreductase JRI60_RS03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS03125 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS03125 PF00989 PAS fold JRI60_RS03155 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS03160 PF00005 ABC transporter JRI60_RS03165 PF02361 Cobalt transport protein JRI60_RS03170 PF02632 BioY family JRI60_RS03175 PF03150 Di-haem cytochrome c peroxidase JRI60_RS03175 PF00034 Cytochrome c JRI60_RS03185 PF00072 Response regulator receiver domain JRI60_RS03185 PF01339 CheB methylesterase JRI60_RS03205 PF07516 SecA Wing and Scaffold domain JRI60_RS03205 PF02810 SEC-C motif JRI60_RS03205 PF07517 SecA DEAD-like domain JRI60_RS03205 PF01043 SecA preprotein cross-linking domain JRI60_RS03225 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS03225 PF02743 Cache domain JRI60_RS03230 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS03270 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JRI60_RS03270 PF12833 Helix-turn-helix domain JRI60_RS03275 PF00293 NUDIX domain JRI60_RS03275 PF01467 Cytidylyltransferase-like JRI60_RS03305 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS03305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS03315 PF00689 Cation transporting ATPase, C-terminus JRI60_RS03315 PF00690 Cation transporter/ATPase, N-terminus JRI60_RS03320 PF00582 Universal stress protein family JRI60_RS03325 PF00582 Universal stress protein family JRI60_RS03330 PF00072 Response regulator receiver domain JRI60_RS03330 PF00158 Sigma-54 interaction domain JRI60_RS03330 PF02954 Bacterial regulatory protein, Fis family JRI60_RS03345 PF13360 PQQ-like domain JRI60_RS03345 PF00069 Protein kinase domain JRI60_RS03360 PF04389 Peptidase family M28 JRI60_RS03375 PF00691 OmpA family JRI60_RS03375 PF05736 OprF membrane domain JRI60_RS03430 PF14765 Polyketide synthase dehydratase JRI60_RS03430 PF00550 Phosphopantetheine attachment site JRI60_RS03430 PF08659 KR domain JRI60_RS03430 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS03430 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS03430 PF00698 Acyl transferase domain JRI60_RS03430 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS03430 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS03435 PF02901 Pyruvate formate lyase-like JRI60_RS03435 PF01228 Glycine radical JRI60_RS03440 PF00698 Acyl transferase domain JRI60_RS03440 PF08990 Erythronolide synthase docking JRI60_RS03440 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS03440 PF00975 Thioesterase domain JRI60_RS03440 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS03440 PF08659 KR domain JRI60_RS03440 PF18369 Polyketide synthase dimerisation element domain JRI60_RS03440 PF00550 Phosphopantetheine attachment site JRI60_RS03440 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS03450 PF00550 Phosphopantetheine attachment site JRI60_RS03450 PF08659 KR domain JRI60_RS03450 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS03450 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS03450 PF14765 Polyketide synthase dehydratase JRI60_RS03450 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS03465 PF00501 AMP-binding enzyme JRI60_RS03475 PF07995 Glucose / Sorbosone dehydrogenase JRI60_RS03485 PF01112 Asparaginase JRI60_RS03490 PF00128 Alpha amylase, catalytic domain JRI60_RS03490 PF09178 Domain of unknown function (DUF1945) JRI60_RS03495 PF00085 Thioredoxin JRI60_RS03520 PF00149 Calcineurin-like phosphoesterase JRI60_RS03525 PF03279 Bacterial lipid A biosynthesis acyltransferase JRI60_RS03530 PF11838 ERAP1-like C-terminal domain JRI60_RS03530 PF01433 Peptidase family M1 domain JRI60_RS03540 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS03555 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JRI60_RS03555 PF14572 Phosphoribosyl synthetase-associated domain JRI60_RS03565 PF05139 Erythromycin esterase JRI60_RS03565 PF00156 Phosphoribosyl transferase domain JRI60_RS03570 PF00156 Phosphoribosyl transferase domain JRI60_RS03570 PF01738 Dienelactone hydrolase family JRI60_RS03580 PF00929 Exonuclease JRI60_RS03585 PF00072 Response regulator receiver domain JRI60_RS03585 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS03590 PF06745 KaiC JRI60_RS03595 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS03595 PF00501 AMP-binding enzyme JRI60_RS03610 PF00994 Probable molybdopterin binding domain JRI60_RS03610 PF02464 Competence-damaged protein JRI60_RS03645 PF00355 Rieske [2Fe-2S] domain JRI60_RS03650 PF08448 PAS fold JRI60_RS03650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS03650 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS03650 PF13426 PAS domain JRI60_RS03650 PF00072 Response regulator receiver domain JRI60_RS03655 PF00083 Sugar (and other) transporter JRI60_RS03660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS03660 PF00989 PAS fold JRI60_RS03660 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS03680 PF03435 Saccharopine dehydrogenase NADP binding domain JRI60_RS03685 PF00388 Phosphatidylinositol-specific phospholipase C, X domain JRI60_RS03745 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS03745 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_RS03745 PF00072 Response regulator receiver domain JRI60_RS03745 PF01627 Hpt domain JRI60_RS03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS03745 PF00672 HAMP domain JRI60_RS03750 PF00072 Response regulator receiver domain JRI60_RS03750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS03750 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS03750 PF09308 LuxQ, periplasmic JRI60_RS03755 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JRI60_RS03755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_RS03760 PF01738 Dienelactone hydrolase family JRI60_RS03770 PF00491 Arginase family JRI60_RS03775 PF00069 Protein kinase domain JRI60_RS03800 PF03705 CheR methyltransferase, all-alpha domain JRI60_RS03800 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS03855 PF00072 Response regulator receiver domain JRI60_RS03855 PF13426 PAS domain JRI60_RS03855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS03870 PF00892 EamA-like transporter family JRI60_RS03910 PF00069 Protein kinase domain JRI60_RS03935 PF00557 Metallopeptidase family M24 JRI60_RS03940 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS03940 PF00672 HAMP domain JRI60_RS03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS03940 PF18698 Histidine kinase sensor domain JRI60_RS03940 PF00989 PAS fold JRI60_RS03945 PF00892 EamA-like transporter family JRI60_RS03950 PF00155 Aminotransferase class I and II JRI60_RS03950 PF00392 Bacterial regulatory proteins, gntR family JRI60_RS03960 PF12706 Beta-lactamase superfamily domain JRI60_RS04005 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS04010 PF00360 Phytochrome region JRI60_RS04010 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04010 PF08446 PAS fold JRI60_RS04010 PF01590 GAF domain JRI60_RS04015 PF02423 Ornithine cyclodeaminase/mu-crystallin family JRI60_RS04085 PF07517 SecA DEAD-like domain JRI60_RS04085 PF01043 SecA preprotein cross-linking domain JRI60_RS04085 PF07516 SecA Wing and Scaffold domain JRI60_RS04085 PF02810 SEC-C motif JRI60_RS04140 PF08359 YsiA-like protein, C-terminal region JRI60_RS04140 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS04145 PF00989 PAS fold JRI60_RS04145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04145 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS04165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JRI60_RS04165 PF02874 ATP synthase alpha/beta family, beta-barrel domain JRI60_RS04165 PF00306 ATP synthase alpha/beta chain, C terminal domain JRI60_RS04170 PF00672 HAMP domain JRI60_RS04170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04170 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS04170 PF16750 Sensor domain of 2-component histidine kinase JRI60_RS04175 PF00213 ATP synthase delta (OSCP) subunit JRI60_RS04180 PF00012 Hsp70 protein JRI60_RS04200 PF01554 MatE JRI60_RS04255 PF00072 Response regulator receiver domain JRI60_RS04255 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS04270 PF01590 GAF domain JRI60_RS04270 PF00360 Phytochrome region JRI60_RS04270 PF08446 PAS fold JRI60_RS04270 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04320 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS04320 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS04320 PF17871 AAA lid domain JRI60_RS04320 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_RS04320 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS04325 PF03741 Integral membrane protein TerC family JRI60_RS04330 PF00326 Prolyl oligopeptidase family JRI60_RS04335 PF03091 CutA1 divalent ion tolerance protein JRI60_RS04345 PF00072 Response regulator receiver domain JRI60_RS04345 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS04355 PF01627 Hpt domain JRI60_RS04355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04355 PF01584 CheW-like domain JRI60_RS04355 PF09078 CheY binding JRI60_RS04355 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_RS04360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS04360 PF02203 Tar ligand binding domain homologue JRI60_RS04360 PF00672 HAMP domain JRI60_RS04365 PF00672 HAMP domain JRI60_RS04365 PF16591 Helical bimodular sensor domain JRI60_RS04365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS04370 PF01584 CheW-like domain JRI60_RS04375 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS04375 PF03705 CheR methyltransferase, all-alpha domain JRI60_RS04390 PF00232 Glycosyl hydrolase family 1 JRI60_RS04415 PF00672 HAMP domain JRI60_RS04415 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS04415 PF18698 Histidine kinase sensor domain JRI60_RS04415 PF00989 PAS fold JRI60_RS04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04420 PF00072 Response regulator receiver domain JRI60_RS04420 PF01339 CheB methylesterase JRI60_RS04425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04425 PF01584 CheW-like domain JRI60_RS04425 PF01627 Hpt domain JRI60_RS04425 PF00072 Response regulator receiver domain JRI60_RS04430 PF02743 Cache domain JRI60_RS04430 PF00672 HAMP domain JRI60_RS04430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS04440 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS04445 PF01584 CheW-like domain JRI60_RS04450 PF01593 Flavin containing amine oxidoreductase JRI60_RS04470 PF00067 Cytochrome P450 JRI60_RS04495 PF00248 Aldo/keto reductase family JRI60_RS04500 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_RS04500 PF04389 Peptidase family M28 JRI60_RS04510 PF00005 ABC transporter JRI60_RS04515 PF00027 Cyclic nucleotide-binding domain JRI60_RS04515 PF01740 STAS domain JRI60_RS04515 PF04960 Glutaminase JRI60_RS04520 PF13545 Crp-like helix-turn-helix domain JRI60_RS04520 PF00027 Cyclic nucleotide-binding domain JRI60_RS04525 PF00905 Penicillin binding protein transpeptidase domain JRI60_RS04525 PF00912 Transglycosylase JRI60_RS04525 PF17092 Penicillin-binding protein OB-like domain JRI60_RS04530 PF09297 NADH pyrophosphatase zinc ribbon domain JRI60_RS04530 PF00293 NUDIX domain JRI60_RS04600 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_RS04625 PF01066 CDP-alcohol phosphatidyltransferase JRI60_RS04630 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JRI60_RS04635 PF01432 Peptidase family M3 JRI60_RS04650 PF00085 Thioredoxin JRI60_RS04670 PF01594 AI-2E family transporter JRI60_RS04680 PF02698 DUF218 domain JRI60_RS04685 PF00072 Response regulator receiver domain JRI60_RS04685 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS04690 PF00231 ATP synthase JRI60_RS04695 PF02874 ATP synthase alpha/beta family, beta-barrel domain JRI60_RS04695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JRI60_RS04705 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JRI60_RS04710 PF01152 Bacterial-like globin JRI60_RS04715 PF00175 Oxidoreductase NAD-binding domain JRI60_RS04715 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS04715 PF00970 Oxidoreductase FAD-binding domain JRI60_RS04720 PF02082 Transcriptional regulator JRI60_RS04730 PF03747 ADP-ribosylglycohydrolase JRI60_RS04745 PF01654 Cytochrome bd terminal oxidase subunit I JRI60_RS04755 PF00501 AMP-binding enzyme JRI60_RS04760 PF08446 PAS fold JRI60_RS04760 PF01590 GAF domain JRI60_RS04760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04760 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS04760 PF00360 Phytochrome region JRI60_RS04765 PF00672 HAMP domain JRI60_RS04765 PF08448 PAS fold JRI60_RS04765 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_RS04765 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS04765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04770 PF00326 Prolyl oligopeptidase family JRI60_RS04770 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JRI60_RS04775 PF01230 HIT domain JRI60_RS04785 PF07969 Amidohydrolase family JRI60_RS04790 PF08525 Opacity-associated protein A N-terminal motif JRI60_RS04790 PF01476 LysM domain JRI60_RS04790 PF01551 Peptidase family M23 JRI60_RS04810 PF00069 Protein kinase domain JRI60_RS04810 PF03793 PASTA domain JRI60_RS04815 PF03793 PASTA domain JRI60_RS04815 PF00069 Protein kinase domain JRI60_RS04840 PF03793 PASTA domain JRI60_RS04840 PF00069 Protein kinase domain JRI60_RS04845 PF01926 50S ribosome-binding GTPase JRI60_RS04845 PF13167 GTP-binding GTPase N-terminal JRI60_RS04845 PF16360 GTP-binding GTPase Middle Region JRI60_RS04875 PF02254 TrkA-N domain JRI60_RS04875 PF00999 Sodium/hydrogen exchanger family JRI60_RS04880 PF00989 PAS fold JRI60_RS04880 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS04880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04885 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS04890 PF00072 Response regulator receiver domain JRI60_RS04890 PF00158 Sigma-54 interaction domain JRI60_RS04890 PF02954 Bacterial regulatory protein, Fis family JRI60_RS04895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04895 PF09078 CheY binding JRI60_RS04895 PF01584 CheW-like domain JRI60_RS04895 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_RS04895 PF01627 Hpt domain JRI60_RS04900 PF00672 HAMP domain JRI60_RS04900 PF02203 Tar ligand binding domain homologue JRI60_RS04900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS04905 PF01584 CheW-like domain JRI60_RS04910 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS04910 PF03705 CheR methyltransferase, all-alpha domain JRI60_RS04915 PF01339 CheB methylesterase JRI60_RS04915 PF00072 Response regulator receiver domain JRI60_RS04935 PF00593 TonB dependent receptor JRI60_RS04945 PF00672 HAMP domain JRI60_RS04945 PF13426 PAS domain JRI60_RS04945 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS04945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS04985 PF05736 OprF membrane domain JRI60_RS04985 PF00691 OmpA family JRI60_RS05005 PF00069 Protein kinase domain JRI60_RS05010 PF00072 Response regulator receiver domain JRI60_RS05010 PF02954 Bacterial regulatory protein, Fis family JRI60_RS05010 PF00158 Sigma-54 interaction domain JRI60_RS05045 PF01738 Dienelactone hydrolase family JRI60_RS05070 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS05070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS05075 PF00989 PAS fold JRI60_RS05075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS05075 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS05100 PF13419 Haloacid dehalogenase-like hydrolase JRI60_RS05110 PF08447 PAS fold JRI60_RS05110 PF13426 PAS domain JRI60_RS05110 PF00989 PAS fold JRI60_RS05110 PF13493 Domain of unknown function (DUF4118) JRI60_RS05110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS05110 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS05125 PF02540 NAD synthase JRI60_RS05125 PF00795 Carbon-nitrogen hydrolase JRI60_RS05135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_RS05140 PF00085 Thioredoxin JRI60_RS05145 PF13419 Haloacid dehalogenase-like hydrolase JRI60_RS05150 PF01062 Bestrophin, RFP-TM, chloride channel JRI60_RS05165 PF02954 Bacterial regulatory protein, Fis family JRI60_RS05165 PF00072 Response regulator receiver domain JRI60_RS05165 PF00158 Sigma-54 interaction domain JRI60_RS05185 PF02261 Aspartate decarboxylase JRI60_RS05200 PF00005 ABC transporter JRI60_RS05205 PF12679 ABC-2 family transporter protein JRI60_RS05225 PF08308 PEGA domain JRI60_RS05225 PF00069 Protein kinase domain JRI60_RS05240 PF11838 ERAP1-like C-terminal domain JRI60_RS05240 PF01433 Peptidase family M1 domain JRI60_RS05285 PF00043 Glutathione S-transferase, C-terminal domain JRI60_RS05285 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS05290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS05290 PF03466 LysR substrate binding domain JRI60_RS05295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS05305 PF12833 Helix-turn-helix domain JRI60_RS05305 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JRI60_RS05320 PF01872 RibD C-terminal domain JRI60_RS05345 PF01965 DJ-1/PfpI family JRI60_RS05350 PF01878 EVE domain JRI60_RS05355 PF08279 HTH domain JRI60_RS05355 PF13280 WYL domain JRI60_RS05365 PF16363 GDP-mannose 4,6 dehydratase JRI60_RS05375 PF04960 Glutaminase JRI60_RS05380 PF03050 Transposase IS66 family JRI60_RS05380 PF13817 IS66 C-terminal element JRI60_RS05380 PF13007 Transposase C of IS166 homeodomain JRI60_RS05380 PF13005 zinc-finger binding domain of transposase IS66 JRI60_RS05405 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS05405 PF00550 Phosphopantetheine attachment site JRI60_RS05405 PF08659 KR domain JRI60_RS05405 PF00698 Acyl transferase domain JRI60_RS05405 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS05405 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS05405 PF14765 Polyketide synthase dehydratase JRI60_RS05405 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS05415 PF00248 Aldo/keto reductase family JRI60_RS05420 PF02627 Carboxymuconolactone decarboxylase family JRI60_RS05430 PF00248 Aldo/keto reductase family JRI60_RS05435 PF03466 LysR substrate binding domain JRI60_RS05435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS05450 PF07508 Recombinase JRI60_RS05450 PF00239 Resolvase, N terminal domain JRI60_RS05450 PF13408 Recombinase zinc beta ribbon domain JRI60_RS05480 PF00069 Protein kinase domain JRI60_RS05480 PF03793 PASTA domain JRI60_RS05485 PF01965 DJ-1/PfpI family JRI60_RS05485 PF12833 Helix-turn-helix domain JRI60_RS05495 PF01266 FAD dependent oxidoreductase JRI60_RS05505 PF12804 MobA-like NTP transferase domain JRI60_RS05505 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_RS05505 PF14602 Hexapeptide repeat of succinyl-transferase JRI60_RS05550 PF01047 MarR family JRI60_RS05570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_RS05575 PF00005 ABC transporter JRI60_RS05585 PF00005 ABC transporter JRI60_RS05585 PF12704 MacB-like periplasmic core domain JRI60_RS05600 PF00535 Glycosyl transferase family 2 JRI60_RS05610 PF00487 Fatty acid desaturase JRI60_RS05615 PF00282 Pyridoxal-dependent decarboxylase conserved domain JRI60_RS05630 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_RS05630 PF14602 Hexapeptide repeat of succinyl-transferase JRI60_RS05630 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JRI60_RS05635 PF13191 AAA ATPase domain JRI60_RS05635 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS05640 PF07689 KaiB domain JRI60_RS05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS05640 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS05650 PF01546 Peptidase family M20/M25/M40 JRI60_RS05650 PF07687 Peptidase dimerisation domain JRI60_RS05660 PF00892 EamA-like transporter family JRI60_RS05670 PF01329 Pterin 4 alpha carbinolamine dehydratase JRI60_RS05675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JRI60_RS05675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JRI60_RS05685 PF16123 Hydroxyacylglutathione hydrolase C-terminus JRI60_RS05685 PF00753 Metallo-beta-lactamase superfamily JRI60_RS05705 PF02687 FtsX-like permease family JRI60_RS05705 PF12704 MacB-like periplasmic core domain JRI60_RS05710 PF00005 ABC transporter JRI60_RS05715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS05715 PF00672 HAMP domain JRI60_RS05715 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS05715 PF13426 PAS domain JRI60_RS05740 PF01218 Coproporphyrinogen III oxidase JRI60_RS05755 PF00893 Small Multidrug Resistance protein JRI60_RS05760 PF08281 Sigma-70, region 4 JRI60_RS05760 PF04542 Sigma-70 region 2 JRI60_RS05790 PF02254 TrkA-N domain JRI60_RS05790 PF00999 Sodium/hydrogen exchanger family JRI60_RS05795 PF01554 MatE JRI60_RS05800 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS05800 PF08448 PAS fold JRI60_RS05800 PF00072 Response regulator receiver domain JRI60_RS05800 PF13188 PAS domain JRI60_RS05800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS05805 PF07885 Ion channel JRI60_RS05805 PF00027 Cyclic nucleotide-binding domain JRI60_RS05810 PF00999 Sodium/hydrogen exchanger family JRI60_RS05820 PF07995 Glucose / Sorbosone dehydrogenase JRI60_RS05845 PF02608 ABC transporter substrate-binding protein PnrA-like JRI60_RS05850 PF00120 Glutamine synthetase, catalytic domain JRI60_RS05850 PF03951 Glutamine synthetase, beta-Grasp domain JRI60_RS05865 PF00892 EamA-like transporter family JRI60_RS05870 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding JRI60_RS05870 PF01628 HrcA protein C terminal domain JRI60_RS05880 PF00781 Diacylglycerol kinase catalytic domain JRI60_RS05885 PF13419 Haloacid dehalogenase-like hydrolase JRI60_RS05910 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS05910 PF08448 PAS fold JRI60_RS05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS05910 PF00072 Response regulator receiver domain JRI60_RS05910 PF13188 PAS domain JRI60_RS05915 PF00072 Response regulator receiver domain JRI60_RS05920 PF07690 Major Facilitator Superfamily JRI60_RS05925 PF13307 Helicase C-terminal domain JRI60_RS05925 PF06733 DEAD_2 JRI60_RS05930 PF00437 Type II/IV secretion system protein JRI60_RS05935 PF00437 Type II/IV secretion system protein JRI60_RS05945 PF00025 ADP-ribosylation factor family JRI60_RS05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS05950 PF01627 Hpt domain JRI60_RS05950 PF00072 Response regulator receiver domain JRI60_RS05950 PF00989 PAS fold JRI60_RS05950 PF18415 Histidine kinase receptor ArcB trans-membrane domain JRI60_RS05950 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS05955 PF02769 AIR synthase related protein, C-terminal domain JRI60_RS05955 PF00586 AIR synthase related protein, N-terminal domain JRI60_RS05960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS05960 PF00672 HAMP domain JRI60_RS05960 PF12729 Four helix bundle sensory module for signal transduction JRI60_RS05965 PF01584 CheW-like domain JRI60_RS05970 PF00072 Response regulator receiver domain JRI60_RS05975 PF07194 P2 response regulator binding domain JRI60_RS05975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS05975 PF01627 Hpt domain JRI60_RS05975 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_RS05975 PF01584 CheW-like domain JRI60_RS05990 PF02903 Alpha amylase, N-terminal ig-like domain JRI60_RS05990 PF16657 Maltogenic Amylase, C-terminal domain JRI60_RS05990 PF00128 Alpha amylase, catalytic domain JRI60_RS05995 PF00005 ABC transporter JRI60_RS05995 PF17912 MalK OB fold domain JRI60_RS06000 PF01547 Bacterial extracellular solute-binding protein JRI60_RS06005 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS06010 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS06030 PF00128 Alpha amylase, catalytic domain JRI60_RS06035 PF11852 Domain of unknown function (DUF3372) JRI60_RS06035 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_RS06035 PF17967 Pullulanase N2 domain JRI60_RS06035 PF03714 Bacterial pullanase-associated domain JRI60_RS06035 PF18494 Pullulanase Ins domain JRI60_RS06040 PF00731 AIR carboxylase JRI60_RS06045 PF01969 Protein of unknown function DUF111 JRI60_RS06050 PF00850 Histone deacetylase domain JRI60_RS06065 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JRI60_RS06080 PF00005 ABC transporter JRI60_RS06090 PF13378 Enolase C-terminal domain-like JRI60_RS06090 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JRI60_RS06095 PF01494 FAD binding domain JRI60_RS06110 PF06724 Domain of Unknown Function (DUF1206) JRI60_RS06130 PF01025 GrpE JRI60_RS06135 PF00012 Hsp70 protein JRI60_RS06140 PF00069 Protein kinase domain JRI60_RS06150 PF13458 Periplasmic binding protein JRI60_RS06155 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS06160 PF11862 Domain of unknown function (DUF3382) JRI60_RS06160 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS06165 PF12399 Branched-chain amino acid ATP-binding cassette transporter JRI60_RS06165 PF00005 ABC transporter JRI60_RS06170 PF00005 ABC transporter JRI60_RS06180 PF00069 Protein kinase domain JRI60_RS06180 PF03793 PASTA domain JRI60_RS06200 PF13649 Methyltransferase domain JRI60_RS06225 PF13860 FlgD Ig-like domain JRI60_RS06225 PF00082 Subtilase family JRI60_RS06225 PF05922 Peptidase inhibitor I9 JRI60_RS06225 PF02225 PA domain JRI60_RS06235 PF09180 Prolyl-tRNA synthetase, C-terminal JRI60_RS06235 PF03129 Anticodon binding domain JRI60_RS06235 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JRI60_RS06260 PF07963 Prokaryotic N-terminal methylation motif JRI60_RS06260 PF00114 Pilin (bacterial filament) JRI60_RS06290 PF12802 MarR family JRI60_RS06320 PF00195 Chalcone and stilbene synthases, N-terminal domain JRI60_RS06320 PF02797 Chalcone and stilbene synthases, C-terminal domain JRI60_RS06325 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family JRI60_RS06335 PF00501 AMP-binding enzyme JRI60_RS06340 PF01494 FAD binding domain JRI60_RS06365 PF00501 AMP-binding enzyme JRI60_RS06365 PF14535 AMP-binding enzyme C-terminal domain JRI60_RS06370 PF02797 Chalcone and stilbene synthases, C-terminal domain JRI60_RS06370 PF00195 Chalcone and stilbene synthases, N-terminal domain JRI60_RS06380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS06380 PF00672 HAMP domain JRI60_RS06385 PF01565 FAD binding domain JRI60_RS06385 PF04030 D-arabinono-1,4-lactone oxidase JRI60_RS06400 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS06400 PF00072 Response regulator receiver domain JRI60_RS06415 PF00578 AhpC/TSA family JRI60_RS06435 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_RS06435 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_RS06450 PF01494 FAD binding domain JRI60_RS06455 PF00067 Cytochrome P450 JRI60_RS06515 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_RS06515 PF17863 AAA lid domain JRI60_RS06525 PF00012 Hsp70 protein JRI60_RS06530 PF00999 Sodium/hydrogen exchanger family JRI60_RS06530 PF02254 TrkA-N domain JRI60_RS06555 PF16363 GDP-mannose 4,6 dehydratase JRI60_RS06565 PF16363 GDP-mannose 4,6 dehydratase JRI60_RS06590 PF01047 MarR family JRI60_RS06600 PF03459 TOBE domain JRI60_RS06600 PF00005 ABC transporter JRI60_RS06605 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS06610 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS06620 PF00934 PE family JRI60_RS06620 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_RS06630 PF08308 PEGA domain JRI60_RS06630 PF00069 Protein kinase domain JRI60_RS06635 PF10531 SLBB domain JRI60_RS06665 PF01032 FecCD transport family JRI60_RS06705 PF00355 Rieske [2Fe-2S] domain JRI60_RS06715 PF00069 Protein kinase domain JRI60_RS06720 PF00005 ABC transporter JRI60_RS06735 PF01230 HIT domain JRI60_RS06745 PF02603 HPr Serine kinase N terminus JRI60_RS06745 PF07475 HPr Serine kinase C-terminal domain JRI60_RS06750 PF03668 P-loop ATPase protein family JRI60_RS06755 PF03610 PTS system fructose IIA component JRI60_RS06755 PF03830 PTS system sorbose subfamily IIB component JRI60_RS06760 PF03830 PTS system sorbose subfamily IIB component JRI60_RS06770 PF03613 PTS system mannose/fructose/sorbose family IID component JRI60_RS06775 PF00381 PTS HPr component phosphorylation site JRI60_RS06780 PF05524 PEP-utilising enzyme, N-terminal JRI60_RS06780 PF00391 PEP-utilising enzyme, mobile domain JRI60_RS06780 PF02896 PEP-utilising enzyme, TIM barrel domain JRI60_RS06785 PF02308 MgtC family JRI60_RS06795 PF01384 Phosphate transporter family JRI60_RS06805 PF00282 Pyridoxal-dependent decarboxylase conserved domain JRI60_RS06810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JRI60_RS06810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JRI60_RS06815 PF01774 UreD urease accessory protein JRI60_RS06820 PF00699 Urease beta subunit JRI60_RS06820 PF00547 Urease, gamma subunit JRI60_RS06825 PF00449 Urease alpha-subunit, N-terminal domain JRI60_RS06825 PF01979 Amidohydrolase family JRI60_RS06830 PF01730 UreF JRI60_RS06835 PF02492 CobW/HypB/UreG, nucleotide-binding domain JRI60_RS06855 PF02773 S-adenosylmethionine synthetase, C-terminal domain JRI60_RS06855 PF02772 S-adenosylmethionine synthetase, central domain JRI60_RS06855 PF00438 S-adenosylmethionine synthetase, N-terminal domain JRI60_RS06860 PF01979 Amidohydrolase family JRI60_RS06870 PF01425 Amidase JRI60_RS06885 PF00501 AMP-binding enzyme JRI60_RS06905 PF04264 YceI-like domain JRI60_RS06910 PF02772 S-adenosylmethionine synthetase, central domain JRI60_RS06910 PF02773 S-adenosylmethionine synthetase, C-terminal domain JRI60_RS06910 PF00438 S-adenosylmethionine synthetase, N-terminal domain JRI60_RS06915 PF05221 S-adenosyl-L-homocysteine hydrolase JRI60_RS06915 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JRI60_RS06925 PF00593 TonB dependent receptor JRI60_RS06970 PF13180 PDZ domain JRI60_RS06975 PF02810 SEC-C motif JRI60_RS06980 PF02673 Bacitracin resistance protein BacA JRI60_RS06990 PF00158 Sigma-54 interaction domain JRI60_RS06990 PF02954 Bacterial regulatory protein, Fis family JRI60_RS06990 PF00072 Response regulator receiver domain JRI60_RS06995 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS07010 PF03062 MBOAT, membrane-bound O-acyltransferase family JRI60_RS07020 PF01050 Mannose-6-phosphate isomerase JRI60_RS07020 PF00483 Nucleotidyl transferase JRI60_RS07025 PF00069 Protein kinase domain JRI60_RS07025 PF07238 PilZ domain JRI60_RS07045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JRI60_RS07045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JRI60_RS07045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JRI60_RS07045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JRI60_RS07050 PF03358 NADPH-dependent FMN reductase JRI60_RS07055 PF00480 ROK family JRI60_RS07060 PF02608 ABC transporter substrate-binding protein PnrA-like JRI60_RS07065 PF00691 OmpA family JRI60_RS07065 PF04972 BON domain JRI60_RS07075 PF00072 Response regulator receiver domain JRI60_RS07075 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS07075 PF01627 Hpt domain JRI60_RS07075 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS07075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS07075 PF00672 HAMP domain JRI60_RS07080 PF01590 GAF domain JRI60_RS07080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS07080 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS07080 PF08446 PAS fold JRI60_RS07080 PF00360 Phytochrome region JRI60_RS07090 PF00067 Cytochrome P450 JRI60_RS07130 PF00248 Aldo/keto reductase family JRI60_RS07145 PF02472 Biopolymer transport protein ExbD/TolR JRI60_RS07150 PF01618 MotA/TolQ/ExbB proton channel family JRI60_RS07155 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS07155 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS07155 PF03413 Peptidase propeptide and YPEB domain JRI60_RS07155 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS07170 PF03793 PASTA domain JRI60_RS07170 PF00069 Protein kinase domain JRI60_RS07185 PF04389 Peptidase family M28 JRI60_RS07185 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_RS07195 PF00593 TonB dependent receptor JRI60_RS07195 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS07215 PF17863 AAA lid domain JRI60_RS07215 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_RS07225 PF00005 ABC transporter JRI60_RS07235 PF01882 Protein of unknown function DUF58 JRI60_RS07250 PF00550 Phosphopantetheine attachment site JRI60_RS07250 PF00668 Condensation domain JRI60_RS07250 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS07250 PF00501 AMP-binding enzyme JRI60_RS07260 PF00069 Protein kinase domain JRI60_RS07260 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS07265 PF06505 Activator of aromatic catabolism JRI60_RS07265 PF02830 V4R domain JRI60_RS07265 PF02954 Bacterial regulatory protein, Fis family JRI60_RS07265 PF00158 Sigma-54 interaction domain JRI60_RS07305 PF00067 Cytochrome P450 JRI60_RS07310 PF00072 Response regulator receiver domain JRI60_RS07310 PF00158 Sigma-54 interaction domain JRI60_RS07310 PF02954 Bacterial regulatory protein, Fis family JRI60_RS07315 PF13188 PAS domain JRI60_RS07315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS07315 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS07315 PF08448 PAS fold JRI60_RS07315 PF00072 Response regulator receiver domain JRI60_RS07320 PF00072 Response regulator receiver domain JRI60_RS07320 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS07335 PF01925 Sulfite exporter TauE/SafE JRI60_RS07365 PF02446 4-alpha-glucanotransferase JRI60_RS07370 PF02245 Methylpurine-DNA glycosylase (MPG) JRI60_RS07375 PF08281 Sigma-70, region 4 JRI60_RS07375 PF04542 Sigma-70 region 2 JRI60_RS07385 PF04055 Radical SAM superfamily JRI60_RS07405 PF08447 PAS fold JRI60_RS07405 PF13426 PAS domain JRI60_RS07405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS07435 PF03167 Uracil DNA glycosylase superfamily JRI60_RS07440 PF00355 Rieske [2Fe-2S] domain JRI60_RS07440 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JRI60_RS07455 PF00919 Uncharacterized protein family UPF0004 JRI60_RS07455 PF04055 Radical SAM superfamily JRI60_RS07465 PF07690 Major Facilitator Superfamily JRI60_RS07475 PF03070 TENA/THI-4/PQQC family JRI60_RS07485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS07505 PF00501 AMP-binding enzyme JRI60_RS07515 PF00149 Calcineurin-like phosphoesterase JRI60_RS07520 PF13514 AAA domain JRI60_RS07525 PF00463 Isocitrate lyase family JRI60_RS07530 PF01274 Malate synthase JRI60_RS07550 PF00206 Lyase JRI60_RS07550 PF10415 Fumarase C C-terminus JRI60_RS07555 PF14031 Putative serine dehydratase domain JRI60_RS07555 PF01168 Alanine racemase, N-terminal domain JRI60_RS07575 PF00574 Clp protease JRI60_RS07585 PF00561 alpha/beta hydrolase fold JRI60_RS07590 PF00149 Calcineurin-like phosphoesterase JRI60_RS07590 PF02872 5'-nucleotidase, C-terminal domain JRI60_RS07590 PF17936 Bacterial Ig domain JRI60_RS07620 PF00501 AMP-binding enzyme JRI60_RS07640 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_RS07650 PF03747 ADP-ribosylglycohydrolase JRI60_RS07665 PF13091 PLD-like domain JRI60_RS07665 PF13396 Phospholipase_D-nuclease N-terminal JRI60_RS07670 PF00633 Helix-hairpin-helix motif JRI60_RS07670 PF10576 Iron-sulfur binding domain of endonuclease III JRI60_RS07670 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_RS07720 PF00583 Acetyltransferase (GNAT) family JRI60_RS07725 PF02774 Semialdehyde dehydrogenase, dimerisation domain JRI60_RS07725 PF01118 Semialdehyde dehydrogenase, NAD binding domain JRI60_RS07730 PF00696 Amino acid kinase family JRI60_RS07745 PF02743 Cache domain JRI60_RS07745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS07745 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS07760 PF00069 Protein kinase domain JRI60_RS07760 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS07765 PF01757 Acyltransferase family JRI60_RS07795 PF06508 Queuosine biosynthesis protein QueC JRI60_RS07810 PF01263 Aldose 1-epimerase JRI60_RS07815 PF13478 XdhC Rossmann domain JRI60_RS07815 PF02625 XdhC and CoxI family JRI60_RS07820 PF00365 Phosphofructokinase JRI60_RS07825 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JRI60_RS07880 PF02705 K+ potassium transporter JRI60_RS07895 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JRI60_RS07900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS07900 PF03466 LysR substrate binding domain JRI60_RS07905 PF07690 Major Facilitator Superfamily JRI60_RS07935 PF01804 Penicillin amidase JRI60_RS07940 PF00391 PEP-utilising enzyme, mobile domain JRI60_RS07940 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JRI60_RS08080 PF00069 Protein kinase domain JRI60_RS08085 PF00722 Glycosyl hydrolases family 16 JRI60_RS08090 PF03466 LysR substrate binding domain JRI60_RS08090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS08115 PF03932 CutC family JRI60_RS08125 PF00067 Cytochrome P450 JRI60_RS08135 PF01464 Transglycosylase SLT domain JRI60_RS08140 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS08140 PF08361 MAATS-type transcriptional repressor, C-terminal region JRI60_RS08150 PF01790 Prolipoprotein diacylglyceryl transferase JRI60_RS08165 PF00793 DAHP synthetase I family JRI60_RS08200 PF10604 Polyketide cyclase / dehydrase and lipid transport JRI60_RS08270 PF01565 FAD binding domain JRI60_RS08270 PF02913 FAD linked oxidases, C-terminal domain JRI60_RS08280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JRI60_RS08280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JRI60_RS08310 PF00326 Prolyl oligopeptidase family JRI60_RS08320 PF05257 CHAP domain JRI60_RS08320 PF01476 LysM domain JRI60_RS08335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS08335 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS08375 PF00083 Sugar (and other) transporter JRI60_RS08390 PF02687 FtsX-like permease family JRI60_RS08390 PF12704 MacB-like periplasmic core domain JRI60_RS08390 PF00005 ABC transporter JRI60_RS08395 PF02687 FtsX-like permease family JRI60_RS08395 PF00005 ABC transporter JRI60_RS08395 PF12704 MacB-like periplasmic core domain JRI60_RS08400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_RS08405 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS08405 PF16750 Sensor domain of 2-component histidine kinase JRI60_RS08405 PF00672 HAMP domain JRI60_RS08405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS08410 PF00072 Response regulator receiver domain JRI60_RS08410 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS08430 PF02223 Thymidylate kinase JRI60_RS08450 PF00672 HAMP domain JRI60_RS08450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS08450 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS08455 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS08455 PF00072 Response regulator receiver domain JRI60_RS08485 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS08485 PF14497 Glutathione S-transferase, C-terminal domain JRI60_RS08490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS08510 PF01571 Aminomethyltransferase folate-binding domain JRI60_RS08510 PF08669 Glycine cleavage T-protein C-terminal barrel domain JRI60_RS08520 PF13462 Thioredoxin JRI60_RS08525 PF01253 Translation initiation factor SUI1 JRI60_RS08540 PF18324 Hypothetical protein TT1725 JRI60_RS08540 PF00180 Isocitrate/isopropylmalate dehydrogenase JRI60_RS08550 PF08447 PAS fold JRI60_RS08550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS08550 PF08448 PAS fold JRI60_RS08560 PF03466 LysR substrate binding domain JRI60_RS08560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS08565 PF00698 Acyl transferase domain JRI60_RS08565 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS08565 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS08565 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS08565 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS08565 PF14765 Polyketide synthase dehydratase JRI60_RS08565 PF00550 Phosphopantetheine attachment site JRI60_RS08565 PF08659 KR domain JRI60_RS08570 PF13419 Haloacid dehalogenase-like hydrolase JRI60_RS08600 PF01979 Amidohydrolase family JRI60_RS08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS08620 PF03466 LysR substrate binding domain JRI60_RS08635 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS08635 PF13823 Alcohol dehydrogenase GroES-associated JRI60_RS08635 PF00107 Zinc-binding dehydrogenase JRI60_RS08655 PF02547 Queuosine biosynthesis protein JRI60_RS08660 PF00534 Glycosyl transferases group 1 JRI60_RS08660 PF13439 Glycosyltransferase Family 4 JRI60_RS08670 PF13580 SIS domain JRI60_RS08700 PF02541 Ppx/GppA phosphatase family JRI60_RS08705 PF13089 Polyphosphate kinase N-terminal domain JRI60_RS08705 PF13090 Polyphosphate kinase C-terminal domain 2 JRI60_RS08705 PF02503 Polyphosphate kinase middle domain JRI60_RS08705 PF17941 Polyphosphate kinase C-terminal domain 1 JRI60_RS08720 PF18698 Histidine kinase sensor domain JRI60_RS08720 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS08720 PF00672 HAMP domain JRI60_RS08720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS08730 PF00072 Response regulator receiver domain JRI60_RS08735 PF13091 PLD-like domain JRI60_RS08745 PF00069 Protein kinase domain JRI60_RS08745 PF03793 PASTA domain JRI60_RS08755 PF14489 QueF-like protein JRI60_RS08760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS08760 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS08770 PF01493 GXGXG motif JRI60_RS08770 PF01645 Conserved region in glutamate synthase JRI60_RS08770 PF04898 Glutamate synthase central domain JRI60_RS08770 PF00310 Glutamine amidotransferases class-II JRI60_RS08775 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS08775 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JRI60_RS08780 PF01872 RibD C-terminal domain JRI60_RS08780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JRI60_RS08795 PF12419 SNF2 Helicase protein JRI60_RS08795 PF00271 Helicase conserved C-terminal domain JRI60_RS08795 PF00176 SNF2 family N-terminal domain JRI60_RS08805 PF04794 YdjC-like protein JRI60_RS08810 PF00069 Protein kinase domain JRI60_RS08825 PF01979 Amidohydrolase family JRI60_RS08830 PF00578 AhpC/TSA family JRI60_RS08835 PF00311 Phosphoenolpyruvate carboxylase JRI60_RS08855 PF05649 Peptidase family M13 JRI60_RS08855 PF01431 Peptidase family M13 JRI60_RS08875 PF02954 Bacterial regulatory protein, Fis family JRI60_RS08875 PF00072 Response regulator receiver domain JRI60_RS08875 PF00158 Sigma-54 interaction domain JRI60_RS08880 PF00535 Glycosyl transferase family 2 JRI60_RS08905 PF00654 Voltage gated chloride channel JRI60_RS08915 PF04542 Sigma-70 region 2 JRI60_RS08915 PF04545 Sigma-70, region 4 JRI60_RS08930 PF01207 Dihydrouridine synthase (Dus) JRI60_RS08935 PF00232 Glycosyl hydrolase family 1 JRI60_RS08945 PF05670 NFACT protein RNA binding domain JRI60_RS08960 PF02887 Pyruvate kinase, alpha/beta domain JRI60_RS08960 PF00391 PEP-utilising enzyme, mobile domain JRI60_RS08960 PF00224 Pyruvate kinase, barrel domain JRI60_RS08970 PF00834 Ribulose-phosphate 3 epimerase family JRI60_RS08975 PF00072 Response regulator receiver domain JRI60_RS08985 PF00069 Protein kinase domain JRI60_RS08985 PF03793 PASTA domain JRI60_RS09065 PF00589 Phage integrase family JRI60_RS09065 PF14659 Phage integrase, N-terminal SAM-like domain JRI60_RS09100 PF13007 Transposase C of IS166 homeodomain JRI60_RS09100 PF03050 Transposase IS66 family JRI60_RS09100 PF13817 IS66 C-terminal element JRI60_RS09100 PF13005 zinc-finger binding domain of transposase IS66 JRI60_RS09130 PF00069 Protein kinase domain JRI60_RS09150 PF07714 Protein tyrosine kinase JRI60_RS09180 PF00069 Protein kinase domain JRI60_RS09180 PF03793 PASTA domain JRI60_RS09195 PF00106 short chain dehydrogenase JRI60_RS09205 PF04264 YceI-like domain JRI60_RS09210 PF02678 Pirin JRI60_RS09210 PF05726 Pirin C-terminal cupin domain JRI60_RS09220 PF02630 SCO1/SenC JRI60_RS09235 PF07969 Amidohydrolase family JRI60_RS09240 PF02830 V4R domain JRI60_RS09240 PF06505 Activator of aromatic catabolism JRI60_RS09240 PF00158 Sigma-54 interaction domain JRI60_RS09240 PF02954 Bacterial regulatory protein, Fis family JRI60_RS09250 PF07690 Major Facilitator Superfamily JRI60_RS09270 PF01817 Chorismate mutase type II JRI60_RS09270 PF01842 ACT domain JRI60_RS09270 PF00800 Prephenate dehydratase JRI60_RS09275 PF17885 Styrene monooxygenase A putative substrate binding domain JRI60_RS09310 PF00149 Calcineurin-like phosphoesterase JRI60_RS09315 PF13538 UvrD-like helicase C-terminal domain JRI60_RS09320 PF03621 MbtH-like protein JRI60_RS09330 PF01381 Helix-turn-helix JRI60_RS09375 PF00510 Cytochrome c oxidase subunit III JRI60_RS09380 PF00115 Cytochrome C and Quinol oxidase polypeptide I JRI60_RS09385 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JRI60_RS09420 PF00037 4Fe-4S binding domain JRI60_RS09420 PF13247 4Fe-4S dicluster domain JRI60_RS09440 PF03449 Transcription elongation factor, N-terminal JRI60_RS09440 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_RS09450 PF01965 DJ-1/PfpI family JRI60_RS09455 PF00756 Putative esterase JRI60_RS09465 PF00425 chorismate binding enzyme JRI60_RS09465 PF04715 Anthranilate synthase component I, N terminal region JRI60_RS09470 PF00117 Glutamine amidotransferase class-I JRI60_RS09480 PF03060 Nitronate monooxygenase JRI60_RS09510 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_RS09515 PF00069 Protein kinase domain JRI60_RS09530 PF00069 Protein kinase domain JRI60_RS09530 PF03793 PASTA domain JRI60_RS09545 PF04738 Lantibiotic dehydratase, N terminus JRI60_RS09545 PF14028 Lantibiotic biosynthesis dehydratase C-term JRI60_RS09555 PF04055 Radical SAM superfamily JRI60_RS09555 PF13186 Iron-sulfur cluster-binding domain JRI60_RS09565 PF00290 Tryptophan synthase alpha chain JRI60_RS09570 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS09575 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JRI60_RS09580 PF00218 Indole-3-glycerol phosphate synthase JRI60_RS09585 PF00591 Glycosyl transferase family, a/b domain JRI60_RS09585 PF02885 Glycosyl transferase family, helical bundle domain JRI60_RS09595 PF01593 Flavin containing amine oxidoreductase JRI60_RS09610 PF00487 Fatty acid desaturase JRI60_RS09615 PF00174 Oxidoreductase molybdopterin binding domain JRI60_RS09620 PF01794 Ferric reductase like transmembrane component JRI60_RS09625 PF00067 Cytochrome P450 JRI60_RS09640 PF00593 TonB dependent receptor JRI60_RS09640 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS09645 PF00069 Protein kinase domain JRI60_RS09665 PF01497 Periplasmic binding protein JRI60_RS09670 PF00072 Response regulator receiver domain JRI60_RS09670 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS09700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS09700 PF00672 HAMP domain JRI60_RS09710 PF00326 Prolyl oligopeptidase family JRI60_RS09710 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JRI60_RS09715 PF00313 'Cold-shock' DNA-binding domain JRI60_RS09720 PF00364 Biotin-requiring enzyme JRI60_RS09720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JRI60_RS09720 PF02817 e3 binding domain JRI60_RS09725 PF00676 Dehydrogenase E1 component JRI60_RS09725 PF16078 2-oxoglutarate dehydrogenase N-terminus JRI60_RS09725 PF02779 Transketolase, pyrimidine binding domain JRI60_RS09725 PF16870 2-oxoglutarate dehydrogenase C-terminal JRI60_RS09735 PF00072 Response regulator receiver domain JRI60_RS09735 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS09740 PF00072 Response regulator receiver domain JRI60_RS09745 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS09745 PF03705 CheR methyltransferase, all-alpha domain JRI60_RS09755 PF01584 CheW-like domain JRI60_RS09755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS09755 PF00072 Response regulator receiver domain JRI60_RS09755 PF01627 Hpt domain JRI60_RS09760 PF01339 CheB methylesterase JRI60_RS09760 PF00072 Response regulator receiver domain JRI60_RS09765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS09765 PF00672 HAMP domain JRI60_RS09770 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS09770 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_RS09770 PF17871 AAA lid domain JRI60_RS09770 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS09770 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS09775 PF02617 ATP-dependent Clp protease adaptor protein ClpS JRI60_RS09795 PF01106 NifU-like domain JRI60_RS09810 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS09810 PF00069 Protein kinase domain JRI60_RS09830 PF01170 Putative RNA methylase family UPF0020 JRI60_RS09830 PF02926 THUMP domain JRI60_RS09835 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS09835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS09845 PF00072 Response regulator receiver domain JRI60_RS09845 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS09850 PF01546 Peptidase family M20/M25/M40 JRI60_RS09850 PF07687 Peptidase dimerisation domain JRI60_RS09855 PF07690 Major Facilitator Superfamily JRI60_RS09860 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS09860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS09900 PF03793 PASTA domain JRI60_RS09900 PF00069 Protein kinase domain JRI60_RS09910 PF00005 ABC transporter JRI60_RS09925 PF00550 Phosphopantetheine attachment site JRI60_RS09925 PF00501 AMP-binding enzyme JRI60_RS09925 PF00668 Condensation domain JRI60_RS09925 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS09930 PF00501 AMP-binding enzyme JRI60_RS09930 PF00668 Condensation domain JRI60_RS09930 PF00668 Condensation domain JRI60_RS09930 PF00550 Phosphopantetheine attachment site JRI60_RS09930 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS09930 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS09930 PF00550 Phosphopantetheine attachment site JRI60_RS09930 PF00501 AMP-binding enzyme JRI60_RS09940 PF16658 Class II release factor RF3, C-terminal domain JRI60_RS09940 PF03144 Elongation factor Tu domain 2 JRI60_RS09940 PF00009 Elongation factor Tu GTP binding domain JRI60_RS09965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JRI60_RS09965 PF00391 PEP-utilising enzyme, mobile domain JRI60_RS09970 PF03793 PASTA domain JRI60_RS09970 PF00069 Protein kinase domain JRI60_RS09990 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JRI60_RS10015 PF01171 PP-loop family JRI60_RS10045 PF00069 Protein kinase domain JRI60_RS10055 PF00561 alpha/beta hydrolase fold JRI60_RS10055 PF00364 Biotin-requiring enzyme JRI60_RS10065 PF00248 Aldo/keto reductase family JRI60_RS10090 PF00082 Subtilase family JRI60_RS10090 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_RS10100 PF00069 Protein kinase domain JRI60_RS10100 PF03793 PASTA domain JRI60_RS10110 PF01638 HxlR-like helix-turn-helix JRI60_RS10115 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS10115 PF00107 Zinc-binding dehydrogenase JRI60_RS10120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_RS10120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_RS10120 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS10185 PF00069 Protein kinase domain JRI60_RS10205 PF00023 Ankyrin repeat JRI60_RS10230 PF07075 Protein of unknown function (DUF1343) JRI60_RS10240 PF02522 Aminoglycoside 3-N-acetyltransferase JRI60_RS10245 PF00704 Glycosyl hydrolases family 18 JRI60_RS10245 PF00553 Cellulose binding domain JRI60_RS10245 PF00041 Fibronectin type III domain JRI60_RS10255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_RS10255 PF05697 Bacterial trigger factor protein (TF) JRI60_RS10255 PF05698 Bacterial trigger factor protein (TF) C-terminus JRI60_RS10270 PF03764 Elongation factor G, domain IV JRI60_RS10270 PF14492 Elongation Factor G, domain II JRI60_RS10270 PF03144 Elongation factor Tu domain 2 JRI60_RS10270 PF00679 Elongation factor G C-terminus JRI60_RS10270 PF00009 Elongation factor Tu GTP binding domain JRI60_RS10300 PF04542 Sigma-70 region 2 JRI60_RS10300 PF08281 Sigma-70, region 4 JRI60_RS10320 PF06470 SMC proteins Flexible Hinge Domain JRI60_RS10320 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS10325 PF03976 Polyphosphate kinase 2 (PPK2) JRI60_RS10330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS10330 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS10365 PF05114 Protein of unknown function (DUF692) JRI60_RS10380 PF03065 Glycosyl hydrolase family 57 JRI60_RS10380 PF03423 Carbohydrate binding domain (family 25) JRI60_RS10380 PF00041 Fibronectin type III domain JRI60_RS10390 PF03190 Protein of unknown function, DUF255 JRI60_RS10415 PF01966 HD domain JRI60_RS10420 PF00753 Metallo-beta-lactamase superfamily JRI60_RS10420 PF16123 Hydroxyacylglutathione hydrolase C-terminus JRI60_RS10425 PF16750 Sensor domain of 2-component histidine kinase JRI60_RS10425 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS10425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS10425 PF00672 HAMP domain JRI60_RS10430 PF00072 Response regulator receiver domain JRI60_RS10430 PF00158 Sigma-54 interaction domain JRI60_RS10430 PF02954 Bacterial regulatory protein, Fis family JRI60_RS10440 PF00484 Carbonic anhydrase JRI60_RS10450 PF00186 Dihydrofolate reductase JRI60_RS10455 PF00303 Thymidylate synthase JRI60_RS10470 PF01923 Cobalamin adenosyltransferase JRI60_RS10475 PF08331 Domain of unknown function (DUF1730) JRI60_RS10485 PF00892 EamA-like transporter family JRI60_RS10495 PF03631 Virulence factor BrkB JRI60_RS10500 PF01435 Peptidase family M48 JRI60_RS10505 PF02735 Ku70/Ku80 beta-barrel domain JRI60_RS10510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JRI60_RS10510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JRI60_RS10525 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JRI60_RS10525 PF06827 Zinc finger found in FPG and IleRS JRI60_RS10525 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JRI60_RS10540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JRI60_RS10540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JRI60_RS10545 PF00701 Dihydrodipicolinate synthetase family JRI60_RS10550 PF05173 Dihydrodipicolinate reductase, C-terminus JRI60_RS10550 PF01113 Dihydrodipicolinate reductase, N-terminus JRI60_RS10555 PF01557 Fumarylacetoacetate (FAA) hydrolase family JRI60_RS10560 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JRI60_RS10570 PF00571 CBS domain JRI60_RS10570 PF01380 SIS domain JRI60_RS10575 PF00923 Transaldolase/Fructose-6-phosphate aldolase JRI60_RS10585 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS10585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS10585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS10590 PF01012 Electron transfer flavoprotein domain JRI60_RS10595 PF00766 Electron transfer flavoprotein FAD-binding domain JRI60_RS10595 PF01012 Electron transfer flavoprotein domain JRI60_RS10605 PF05402 Coenzyme PQQ synthesis protein D (PqqD) JRI60_RS10650 PF00849 RNA pseudouridylate synthase JRI60_RS10650 PF01479 S4 domain JRI60_RS10655 PF00912 Transglycosylase JRI60_RS10655 PF00905 Penicillin binding protein transpeptidase domain JRI60_RS10655 PF17092 Penicillin-binding protein OB-like domain JRI60_RS10660 PF00106 short chain dehydrogenase JRI60_RS10675 PF00043 Glutathione S-transferase, C-terminal domain JRI60_RS10675 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS10685 PF00850 Histone deacetylase domain JRI60_RS10690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS10690 PF08447 PAS fold JRI60_RS10690 PF13426 PAS domain JRI60_RS10700 PF02416 mttA/Hcf106 family JRI60_RS10705 PF00902 Sec-independent protein translocase protein (TatC) JRI60_RS10705 PF00902 Sec-independent protein translocase protein (TatC) JRI60_RS10720 PF00561 alpha/beta hydrolase fold JRI60_RS10725 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_RS10730 PF02397 Bacterial sugar transferase JRI60_RS10735 PF01048 Phosphorylase superfamily JRI60_RS10740 PF00171 Aldehyde dehydrogenase family JRI60_RS10745 PF00248 Aldo/keto reductase family JRI60_RS10750 PF00072 Response regulator receiver domain JRI60_RS10755 PF00085 Thioredoxin JRI60_RS10770 PF00550 Phosphopantetheine attachment site JRI60_RS10770 PF00501 AMP-binding enzyme JRI60_RS10770 PF00668 Condensation domain JRI60_RS10770 PF07993 Male sterility protein JRI60_RS10770 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS10775 PF00069 Protein kinase domain JRI60_RS10775 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS10780 PF03793 PASTA domain JRI60_RS10780 PF00069 Protein kinase domain JRI60_RS10795 PF02803 Thiolase, C-terminal domain JRI60_RS10795 PF00108 Thiolase, N-terminal domain JRI60_RS10815 PF00158 Sigma-54 interaction domain JRI60_RS10815 PF02954 Bacterial regulatory protein, Fis family JRI60_RS10815 PF06505 Activator of aromatic catabolism JRI60_RS10815 PF02830 V4R domain JRI60_RS10820 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JRI60_RS10825 PF04264 YceI-like domain JRI60_RS10840 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS10840 PF13291 ACT domain JRI60_RS10845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JRI60_RS10845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JRI60_RS10850 PF01381 Helix-turn-helix JRI60_RS10855 PF00270 DEAD/DEAH box helicase JRI60_RS10855 PF00271 Helicase conserved C-terminal domain JRI60_RS10860 PF04545 Sigma-70, region 4 JRI60_RS10860 PF04539 Sigma-70 region 3 JRI60_RS10860 PF04542 Sigma-70 region 2 JRI60_RS10860 PF00140 Sigma-70 factor, region 1.2 JRI60_RS10930 PF13302 Acetyltransferase (GNAT) domain JRI60_RS10935 PF01434 Peptidase family M41 JRI60_RS10935 PF17862 AAA+ lid domain JRI60_RS10935 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS10950 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS10970 PF03466 LysR substrate binding domain JRI60_RS10970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS10985 PF00652 Ricin-type beta-trefoil lectin domain JRI60_RS10985 PF02983 Alpha-lytic protease prodomain JRI60_RS11010 PF00176 SNF2 family N-terminal domain JRI60_RS11010 PF00271 Helicase conserved C-terminal domain JRI60_RS11010 PF12419 SNF2 Helicase protein JRI60_RS11015 PF01471 Putative peptidoglycan binding domain JRI60_RS11015 PF01510 N-acetylmuramoyl-L-alanine amidase JRI60_RS11015 PF01476 LysM domain JRI60_RS11035 PF00069 Protein kinase domain JRI60_RS11035 PF03793 PASTA domain JRI60_RS11045 PF01479 S4 domain JRI60_RS11045 PF00163 Ribosomal protein S4/S9 N-terminal domain JRI60_RS11050 PF16363 GDP-mannose 4,6 dehydratase JRI60_RS11055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS11055 PF03466 LysR substrate binding domain JRI60_RS11060 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JRI60_RS11060 PF00326 Prolyl oligopeptidase family JRI60_RS11075 PF00982 Glycosyltransferase family 20 JRI60_RS11110 PF13537 Glutamine amidotransferase domain JRI60_RS11110 PF00733 Asparagine synthase JRI60_RS11115 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS11115 PF00107 Zinc-binding dehydrogenase JRI60_RS11150 PF00561 alpha/beta hydrolase fold JRI60_RS11155 PF00892 EamA-like transporter family JRI60_RS11175 PF07238 PilZ domain JRI60_RS11175 PF00069 Protein kinase domain JRI60_RS11200 PF00285 Citrate synthase, C-terminal domain JRI60_RS11210 PF00080 Copper/zinc superoxide dismutase (SODC) JRI60_RS11225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS11225 PF00183 Hsp90 protein JRI60_RS11230 PF17668 Acetyltransferase (GNAT) domain JRI60_RS11230 PF13530 Sterol carrier protein domain JRI60_RS11235 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS11235 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS11255 PF04116 Fatty acid hydroxylase superfamily JRI60_RS11260 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS11260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS11260 PF00672 HAMP domain JRI60_RS11260 PF01627 Hpt domain JRI60_RS11260 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS11260 PF00072 Response regulator receiver domain JRI60_RS11265 PF01042 Endoribonuclease L-PSP JRI60_RS11270 PF00474 Sodium:solute symporter family JRI60_RS11280 PF13520 Amino acid permease JRI60_RS11295 PF00067 Cytochrome P450 JRI60_RS11300 PF00158 Sigma-54 interaction domain JRI60_RS11300 PF00072 Response regulator receiver domain JRI60_RS11300 PF02954 Bacterial regulatory protein, Fis family JRI60_RS11305 PF00106 short chain dehydrogenase JRI60_RS11315 PF13537 Glutamine amidotransferase domain JRI60_RS11315 PF00733 Asparagine synthase JRI60_RS11320 PF01648 4'-phosphopantetheinyl transferase superfamily JRI60_RS11325 PF00550 Phosphopantetheine attachment site JRI60_RS11330 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS11330 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS11335 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS11335 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS11340 PF00106 short chain dehydrogenase JRI60_RS11350 PF04199 Putative cyclase JRI60_RS11385 PF01047 MarR family JRI60_RS11390 PF08447 PAS fold JRI60_RS11390 PF00989 PAS fold JRI60_RS11390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS11390 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS11400 PF13367 PrsW family intramembrane metalloprotease JRI60_RS11410 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase JRI60_RS11415 PF01266 FAD dependent oxidoreductase JRI60_RS11425 PF13677 Membrane MotB of proton-channel complex MotA/MotB JRI60_RS11425 PF00691 OmpA family JRI60_RS11435 PF00069 Protein kinase domain JRI60_RS11480 PF04328 Selenoprotein, putative JRI60_RS11485 PF13722 5TM C-terminal transporter carbon starvation CstA JRI60_RS11485 PF02554 Carbon starvation protein CstA JRI60_RS11490 PF00067 Cytochrome P450 JRI60_RS11495 PF01266 FAD dependent oxidoreductase JRI60_RS11495 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JRI60_RS11500 PF02913 FAD linked oxidases, C-terminal domain JRI60_RS11500 PF01565 FAD binding domain JRI60_RS11535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JRI60_RS11535 PF07733 Bacterial DNA polymerase III alpha NTPase domain JRI60_RS11535 PF14579 Helix-hairpin-helix motif JRI60_RS11535 PF01336 OB-fold nucleic acid binding domain JRI60_RS11535 PF02811 PHP domain JRI60_RS11540 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS11560 PF00343 Carbohydrate phosphorylase JRI60_RS11575 PF04225 Opacity-associated protein A LysM-like domain JRI60_RS11575 PF01551 Peptidase family M23 JRI60_RS11580 PF04293 SpoVR like protein JRI60_RS11585 PF04285 Protein of unknown function (DUF444) JRI60_RS11590 PF08298 PrkA AAA domain JRI60_RS11590 PF06798 PrkA serine protein kinase C-terminal domain JRI60_RS11600 PF00005 ABC transporter JRI60_RS11605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS11605 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS11605 PF00072 Response regulator receiver domain JRI60_RS11605 PF09308 LuxQ, periplasmic JRI60_RS11615 PF00072 Response regulator receiver domain JRI60_RS11620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS11620 PF00989 PAS fold JRI60_RS11620 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS11625 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS11625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS11640 PF02954 Bacterial regulatory protein, Fis family JRI60_RS11640 PF00072 Response regulator receiver domain JRI60_RS11640 PF00158 Sigma-54 interaction domain JRI60_RS11645 PF00989 PAS fold JRI60_RS11645 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS11645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS11660 PF00873 AcrB/AcrD/AcrF family JRI60_RS11670 PF03466 LysR substrate binding domain JRI60_RS11670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS11675 PF05726 Pirin C-terminal cupin domain JRI60_RS11675 PF02678 Pirin JRI60_RS11680 PF00216 Bacterial DNA-binding protein JRI60_RS11695 PF03576 Peptidase family S58 JRI60_RS11700 PF01757 Acyltransferase family JRI60_RS11725 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS11725 PF13305 Tetracyclin repressor-like, C-terminal domain JRI60_RS11730 PF07690 Major Facilitator Superfamily JRI60_RS11735 PF03055 Retinal pigment epithelial membrane protein JRI60_RS11745 PF18029 Glyoxalase-like domain JRI60_RS11745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS11755 PF12796 Ankyrin repeats (3 copies) JRI60_RS11770 PF00069 Protein kinase domain JRI60_RS11770 PF03793 PASTA domain JRI60_RS11780 PF00722 Glycosyl hydrolases family 16 JRI60_RS11800 PF18698 Histidine kinase sensor domain JRI60_RS11800 PF00989 PAS fold JRI60_RS11800 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS11800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS11800 PF00672 HAMP domain JRI60_RS11810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS11815 PF00072 Response regulator receiver domain JRI60_RS11815 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS11830 PF03652 Holliday junction resolvase JRI60_RS11865 PF02374 Anion-transporting ATPase JRI60_RS11870 PF02374 Anion-transporting ATPase JRI60_RS11880 PF13614 AAA domain JRI60_RS11885 PF07879 PHB/PHA accumulation regulator DNA-binding domain JRI60_RS11885 PF05233 PHB accumulation regulatory domain JRI60_RS11900 PF02416 mttA/Hcf106 family JRI60_RS11905 PF03009 Glycerophosphoryl diester phosphodiesterase family JRI60_RS11915 PF13180 PDZ domain JRI60_RS11915 PF03572 Peptidase family S41 JRI60_RS11925 PF04107 Glutamate-cysteine ligase family 2(GCS2) JRI60_RS11930 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_RS11930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS11930 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS11940 PF00012 Hsp70 protein JRI60_RS11950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JRI60_RS11950 PF01411 tRNA synthetases class II (A) JRI60_RS11950 PF02272 DHHA1 domain JRI60_RS11975 PF13307 Helicase C-terminal domain JRI60_RS12000 PF00072 Response regulator receiver domain JRI60_RS12000 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS12005 PF02390 Putative methyltransferase JRI60_RS12010 PF01687 Riboflavin kinase JRI60_RS12010 PF06574 FAD synthetase JRI60_RS12015 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JRI60_RS12015 PF00437 Type II/IV secretion system protein JRI60_RS12020 PF00437 Type II/IV secretion system protein JRI60_RS12025 PF00482 Type II secretion system (T2SS), protein F JRI60_RS12030 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS12030 PF00989 PAS fold JRI60_RS12035 PF00158 Sigma-54 interaction domain JRI60_RS12035 PF02954 Bacterial regulatory protein, Fis family JRI60_RS12035 PF00072 Response regulator receiver domain JRI60_RS12045 PF00005 ABC transporter JRI60_RS12055 PF14245 Type IV pilin PilA JRI60_RS12055 PF07963 Prokaryotic N-terminal methylation motif JRI60_RS12060 PF06750 Bacterial Peptidase A24 N-terminal domain JRI60_RS12060 PF01478 Type IV leader peptidase family JRI60_RS12065 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS12065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS12070 PF00072 Response regulator receiver domain JRI60_RS12070 PF02954 Bacterial regulatory protein, Fis family JRI60_RS12070 PF00158 Sigma-54 interaction domain JRI60_RS12075 PF11104 Type IV pilus assembly protein PilM; JRI60_RS12095 PF03958 Bacterial type II/III secretion system short domain JRI60_RS12095 PF11741 AMIN domain JRI60_RS12095 PF07660 Secretin and TonB N terminus short domain JRI60_RS12095 PF00263 Bacterial type II and III secretion system protein JRI60_RS12110 PF01132 Elongation factor P (EF-P) OB domain JRI60_RS12110 PF09285 Elongation factor P, C-terminal JRI60_RS12110 PF08207 Elongation factor P (EF-P) KOW-like domain JRI60_RS12115 PF00364 Biotin-requiring enzyme JRI60_RS12120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_RS12120 PF02785 Biotin carboxylase C-terminal domain JRI60_RS12120 PF00289 Biotin carboxylase, N-terminal domain JRI60_RS12130 PF13401 AAA domain JRI60_RS12130 PF01471 Putative peptidoglycan binding domain JRI60_RS12140 PF01103 Surface antigen JRI60_RS12140 PF07244 Surface antigen variable number repeat JRI60_RS12170 PF03009 Glycerophosphoryl diester phosphodiesterase family JRI60_RS12175 PF16657 Maltogenic Amylase, C-terminal domain JRI60_RS12175 PF02903 Alpha amylase, N-terminal ig-like domain JRI60_RS12175 PF00128 Alpha amylase, catalytic domain JRI60_RS12180 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_RS12185 PF13382 Adenine deaminase C-terminal domain JRI60_RS12185 PF01979 Amidohydrolase family JRI60_RS12200 PF00797 N-acetyltransferase JRI60_RS12205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JRI60_RS12215 PF02541 Ppx/GppA phosphatase family JRI60_RS12220 PF08448 PAS fold JRI60_RS12220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS12220 PF08447 PAS fold JRI60_RS12240 PF07676 WD40-like Beta Propeller Repeat JRI60_RS12240 PF04052 TolB amino-terminal domain JRI60_RS12250 PF02472 Biopolymer transport protein ExbD/TolR JRI60_RS12255 PF01618 MotA/TolQ/ExbB proton channel family JRI60_RS12265 PF01177 Asp/Glu/Hydantoin racemase JRI60_RS12270 PF10520 B domain of TMEM189, localisation domain JRI60_RS12280 PF00005 ABC transporter JRI60_RS12285 PF02687 FtsX-like permease family JRI60_RS12285 PF18075 FtsX extracellular domain JRI60_RS12290 PF01551 Peptidase family M23 JRI60_RS12295 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JRI60_RS12295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_RS12300 PF00561 alpha/beta hydrolase fold JRI60_RS12305 PF13180 PDZ domain JRI60_RS12305 PF03572 Peptidase family S41 JRI60_RS12310 PF03466 LysR substrate binding domain JRI60_RS12310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS12315 PF00085 Thioredoxin JRI60_RS12320 PF00557 Metallopeptidase family M24 JRI60_RS12335 PF00056 lactate/malate dehydrogenase, NAD binding domain JRI60_RS12335 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JRI60_RS12340 PF03129 Anticodon binding domain JRI60_RS12340 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JRI60_RS12340 PF02824 TGS domain JRI60_RS12340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JRI60_RS12345 PF00023 Ankyrin repeat JRI60_RS12345 PF12796 Ankyrin repeats (3 copies) JRI60_RS12350 PF00199 Catalase JRI60_RS12350 PF06628 Catalase-related immune-responsive JRI60_RS12355 PF03466 LysR substrate binding domain JRI60_RS12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS12370 PF01820 D-ala D-ala ligase N-terminus JRI60_RS12370 PF07478 D-ala D-ala ligase C-terminus JRI60_RS12400 PF02881 SRP54-type protein, helical bundle domain JRI60_RS12400 PF00448 SRP54-type protein, GTPase domain JRI60_RS12415 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_RS12415 PF13456 Reverse transcriptase-like JRI60_RS12475 PF12706 Beta-lactamase superfamily domain JRI60_RS12480 PF01791 DeoC/LacD family aldolase JRI60_RS12490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JRI60_RS12490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JRI60_RS12490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JRI60_RS12490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JRI60_RS12505 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS12510 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS12515 PF00005 ABC transporter JRI60_RS12520 PF02885 Glycosyl transferase family, helical bundle domain JRI60_RS12520 PF00591 Glycosyl transferase family, a/b domain JRI60_RS12520 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JRI60_RS12525 PF01048 Phosphorylase superfamily JRI60_RS12535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JRI60_RS12540 PF00248 Aldo/keto reductase family JRI60_RS12545 PF00128 Alpha amylase, catalytic domain JRI60_RS12545 PF00686 Starch binding domain JRI60_RS12545 PF09081 Domain of unknown function (DUF1921) JRI60_RS12550 PF01979 Amidohydrolase family JRI60_RS12595 PF00005 ABC transporter JRI60_RS12595 PF02687 FtsX-like permease family JRI60_RS12595 PF12704 MacB-like periplasmic core domain JRI60_RS12610 PF00069 Protein kinase domain JRI60_RS12620 PF06745 KaiC JRI60_RS12625 PF00672 HAMP domain JRI60_RS12625 PF13426 PAS domain JRI60_RS12625 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS12630 PF04116 Fatty acid hydroxylase superfamily JRI60_RS12640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS12640 PF08447 PAS fold JRI60_RS12640 PF08448 PAS fold JRI60_RS12650 PF00877 NlpC/P60 family JRI60_RS12650 PF01476 LysM domain JRI60_RS12660 PF00072 Response regulator receiver domain JRI60_RS12665 PF00924 Mechanosensitive ion channel JRI60_RS12675 PF00571 CBS domain JRI60_RS12690 PF00561 alpha/beta hydrolase fold JRI60_RS12695 PF10127 RNA repair pathway DNA polymerase beta family JRI60_RS12735 PF00561 alpha/beta hydrolase fold JRI60_RS12740 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_RS12740 PF17863 AAA lid domain JRI60_RS12745 PF01882 Protein of unknown function DUF58 JRI60_RS12760 PF00092 von Willebrand factor type A domain JRI60_RS12780 PF00005 ABC transporter JRI60_RS12805 PF00294 pfkB family carbohydrate kinase JRI60_RS12810 PF00082 Subtilase family JRI60_RS12815 PF00719 Inorganic pyrophosphatase JRI60_RS12825 PF08308 PEGA domain JRI60_RS12825 PF00069 Protein kinase domain JRI60_RS12865 PF12704 MacB-like periplasmic core domain JRI60_RS12865 PF02687 FtsX-like permease family JRI60_RS12870 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS12870 PF00072 Response regulator receiver domain JRI60_RS12890 PF01514 Secretory protein of YscJ/FliF family JRI60_RS12900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JRI60_RS12910 PF00813 FliP family JRI60_RS12915 PF01313 Bacterial export proteins, family 3 JRI60_RS12920 PF01311 Bacterial export proteins, family 1 JRI60_RS12925 PF01312 FlhB HrpN YscU SpaS Family JRI60_RS12930 PF00771 FHIPEP family JRI60_RS12935 PF00216 Bacterial DNA-binding protein JRI60_RS12940 PF03631 Virulence factor BrkB JRI60_RS12945 PF10150 Ribonuclease E/G family JRI60_RS12945 PF00575 S1 RNA binding domain JRI60_RS12945 PF10150 Ribonuclease E/G family JRI60_RS12945 PF00575 S1 RNA binding domain JRI60_RS12955 PF00708 Acylphosphatase JRI60_RS12960 PF00533 BRCA1 C Terminus (BRCT) domain JRI60_RS12960 PF01653 NAD-dependent DNA ligase adenylation domain JRI60_RS12960 PF12826 Helix-hairpin-helix motif JRI60_RS12960 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JRI60_RS12960 PF03120 NAD-dependent DNA ligase OB-fold domain JRI60_RS12965 PF07497 Rho termination factor, RNA-binding domain JRI60_RS12965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JRI60_RS12965 PF07498 Rho termination factor, N-terminal domain JRI60_RS12975 PF01594 AI-2E family transporter JRI60_RS12985 PF02540 NAD synthase JRI60_RS12985 PF00958 GMP synthase C terminal domain JRI60_RS12985 PF00117 Glutamine amidotransferase class-I JRI60_RS12995 PF00120 Glutamine synthetase, catalytic domain JRI60_RS13000 PF00465 Iron-containing alcohol dehydrogenase JRI60_RS13045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS13045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS13045 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS13060 PF02381 MraZ protein, putative antitoxin-like JRI60_RS13070 PF01795 MraW methylase family JRI60_RS13075 PF04977 Septum formation initiator JRI60_RS13080 PF00905 Penicillin binding protein transpeptidase domain JRI60_RS13080 PF03717 Penicillin-binding Protein dimerisation domain JRI60_RS13085 PF08245 Mur ligase middle domain JRI60_RS13085 PF01225 Mur ligase family, catalytic domain JRI60_RS13085 PF02875 Mur ligase family, glutamate ligase domain JRI60_RS13090 PF01225 Mur ligase family, catalytic domain JRI60_RS13090 PF02875 Mur ligase family, glutamate ligase domain JRI60_RS13090 PF08245 Mur ligase middle domain JRI60_RS13095 PF00953 Glycosyl transferase family 4 JRI60_RS13095 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JRI60_RS13100 PF02875 Mur ligase family, glutamate ligase domain JRI60_RS13100 PF08245 Mur ligase middle domain JRI60_RS13105 PF01098 Cell cycle protein JRI60_RS13110 PF03033 Glycosyltransferase family 28 N-terminal domain JRI60_RS13110 PF04101 Glycosyltransferase family 28 C-terminal domain JRI60_RS13115 PF08245 Mur ligase middle domain JRI60_RS13115 PF01225 Mur ligase family, catalytic domain JRI60_RS13115 PF02875 Mur ligase family, glutamate ligase domain JRI60_RS13120 PF01565 FAD binding domain JRI60_RS13120 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JRI60_RS13125 PF07478 D-ala D-ala ligase C-terminus JRI60_RS13125 PF01820 D-ala D-ala ligase N-terminus JRI60_RS13130 PF03799 Cell division protein FtsQ JRI60_RS13130 PF08478 POTRA domain, FtsQ-type JRI60_RS13135 PF02491 SHS2 domain inserted in FTSA JRI60_RS13150 PF03793 PASTA domain JRI60_RS13150 PF00069 Protein kinase domain JRI60_RS13170 PF03050 Transposase IS66 family JRI60_RS13170 PF13005 zinc-finger binding domain of transposase IS66 JRI60_RS13170 PF13007 Transposase C of IS166 homeodomain JRI60_RS13170 PF13817 IS66 C-terminal element JRI60_RS13190 PF00069 Protein kinase domain JRI60_RS13215 PF04754 Putative transposase, YhgA-like JRI60_RS13220 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS13220 PF13191 AAA ATPase domain JRI60_RS13245 PF00144 Beta-lactamase JRI60_RS13250 PF06745 KaiC JRI60_RS13255 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS13255 PF00072 Response regulator receiver domain JRI60_RS13280 PF12327 FtsZ family, C-terminal domain JRI60_RS13280 PF00091 Tubulin/FtsZ family, GTPase domain JRI60_RS13290 PF02785 Biotin carboxylase C-terminal domain JRI60_RS13290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_RS13290 PF00289 Biotin carboxylase, N-terminal domain JRI60_RS13295 PF00364 Biotin-requiring enzyme JRI60_RS13300 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS13305 PF00072 Response regulator receiver domain JRI60_RS13305 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS13310 PF00498 FHA domain JRI60_RS13310 PF00005 ABC transporter JRI60_RS13310 PF01061 ABC-2 type transporter JRI60_RS13325 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JRI60_RS13330 PF00005 ABC transporter JRI60_RS13350 PF00152 tRNA synthetases class II (D, K and N) JRI60_RS13355 PF00719 Inorganic pyrophosphatase JRI60_RS13360 PF00248 Aldo/keto reductase family JRI60_RS13365 PF03466 LysR substrate binding domain JRI60_RS13365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS13380 PF12706 Beta-lactamase superfamily domain JRI60_RS13400 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JRI60_RS13400 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JRI60_RS13400 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JRI60_RS13410 PF03099 Biotin/lipoate A/B protein ligase family JRI60_RS13410 PF00293 NUDIX domain JRI60_RS13420 PF08453 Peptidase family M9 N-terminal JRI60_RS13420 PF18496 Collagenase G catalytic helper subdomain JRI60_RS13420 PF01752 Collagenase JRI60_RS13480 PF02595 Glycerate kinase family JRI60_RS13490 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_RS13490 PF17785 PUA-like domain JRI60_RS13505 PF04186 FxsA cytoplasmic membrane protein JRI60_RS13530 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_RS13535 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_RS13560 PF00083 Sugar (and other) transporter JRI60_RS13570 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS13570 PF00571 CBS domain JRI60_RS13580 PF00483 Nucleotidyl transferase JRI60_RS13595 PF00588 SpoU rRNA Methylase family JRI60_RS13600 PF00226 DnaJ domain JRI60_RS13600 PF00684 DnaJ central domain JRI60_RS13600 PF01556 DnaJ C terminal domain JRI60_RS13605 PF00072 Response regulator receiver domain JRI60_RS13605 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS13610 PF00814 Glycoprotease family JRI60_RS13615 PF00398 Ribosomal RNA adenine dimethylase JRI60_RS13630 PF01712 Deoxynucleoside kinase JRI60_RS13635 PF02548 Ketopantoate hydroxymethyltransferase JRI60_RS13640 PF02569 Pantoate-beta-alanine ligase JRI60_RS13645 PF01668 SmpB protein JRI60_RS13655 PF08308 PEGA domain JRI60_RS13655 PF00069 Protein kinase domain JRI60_RS13665 PF01966 HD domain JRI60_RS13680 PF00795 Carbon-nitrogen hydrolase JRI60_RS13685 PF02576 RimP N-terminal domain JRI60_RS13685 PF17384 RimP C-terminal SH3 domain JRI60_RS13690 PF13184 NusA-like KH domain JRI60_RS13690 PF08529 NusA N-terminal domain JRI60_RS13690 PF00575 S1 RNA binding domain JRI60_RS13700 PF11987 Translation-initiation factor 2 JRI60_RS13700 PF00009 Elongation factor Tu GTP binding domain JRI60_RS13700 PF04760 Translation initiation factor IF-2, N-terminal region JRI60_RS13710 PF02033 Ribosome-binding factor A JRI60_RS13715 PF09157 Pseudouridine synthase II TruB, C-terminal JRI60_RS13715 PF16198 tRNA pseudouridylate synthase B C-terminal domain JRI60_RS13715 PF01509 TruB family pseudouridylate synthase (N terminal domain) JRI60_RS13720 PF00312 Ribosomal protein S15 JRI60_RS13725 PF00013 KH domain JRI60_RS13725 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JRI60_RS13725 PF01138 3' exoribonuclease family, domain 1 JRI60_RS13725 PF00575 S1 RNA binding domain JRI60_RS13725 PF03725 3' exoribonuclease family, domain 2 JRI60_RS13730 PF10397 Adenylosuccinate lyase C-terminus JRI60_RS13730 PF00206 Lyase JRI60_RS13740 PF03793 PASTA domain JRI60_RS13740 PF00069 Protein kinase domain JRI60_RS13745 PF00692 dUTPase JRI60_RS13750 PF04225 Opacity-associated protein A LysM-like domain JRI60_RS13750 PF01551 Peptidase family M23 JRI60_RS13760 PF01259 SAICAR synthetase JRI60_RS13780 PF17820 PDZ domain JRI60_RS13780 PF13180 PDZ domain JRI60_RS13795 PF00578 AhpC/TSA family JRI60_RS13810 PF00282 Pyridoxal-dependent decarboxylase conserved domain JRI60_RS13820 PF00691 OmpA family JRI60_RS13830 PF00675 Insulinase (Peptidase family M16) JRI60_RS13830 PF05193 Peptidase M16 inactive domain JRI60_RS13910 PF01695 IstB-like ATP binding protein JRI60_RS13920 PF00665 Integrase core domain JRI60_RS13925 PF01695 IstB-like ATP binding protein JRI60_RS13930 PF00665 Integrase core domain JRI60_RS13955 PF14765 Polyketide synthase dehydratase JRI60_RS13955 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS13955 PF08659 KR domain JRI60_RS13955 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS13955 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS13955 PF00698 Acyl transferase domain JRI60_RS13955 PF00550 Phosphopantetheine attachment site JRI60_RS13990 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS13990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS13990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS13995 PF03793 PASTA domain JRI60_RS13995 PF00069 Protein kinase domain JRI60_RS14050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS14050 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS14050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS14055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS14055 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS14055 PF00989 PAS fold JRI60_RS14095 PF00753 Metallo-beta-lactamase superfamily JRI60_RS14110 PF00072 Response regulator receiver domain JRI60_RS14110 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS14115 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS14115 PF13493 Domain of unknown function (DUF4118) JRI60_RS14115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS14115 PF00989 PAS fold JRI60_RS14115 PF08447 PAS fold JRI60_RS14115 PF13426 PAS domain JRI60_RS14140 PF17954 Quercetinase C-terminal cupin domain JRI60_RS14140 PF02678 Pirin JRI60_RS14170 PF00703 Glycosyl hydrolases family 2 JRI60_RS14170 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JRI60_RS14170 PF02929 Beta galactosidase small chain JRI60_RS14170 PF02837 Glycosyl hydrolases family 2, sugar binding domain JRI60_RS14170 PF16353 Domain of unknown function(DUF4981) JRI60_RS14235 PF02566 OsmC-like protein JRI60_RS14245 PF00561 alpha/beta hydrolase fold JRI60_RS14250 PF01794 Ferric reductase like transmembrane component JRI60_RS14260 PF02683 Cytochrome C biogenesis protein transmembrane region JRI60_RS14265 PF17991 Thioredoxin like C-terminal domain JRI60_RS14265 PF02683 Cytochrome C biogenesis protein transmembrane region JRI60_RS14265 PF00578 AhpC/TSA family JRI60_RS14270 PF00072 Response regulator receiver domain JRI60_RS14270 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS14275 PF00672 HAMP domain JRI60_RS14275 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS14275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS14280 PF00107 Zinc-binding dehydrogenase JRI60_RS14280 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS14285 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS14310 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_RS14315 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JRI60_RS14315 PF17203 Single cache domain 3 JRI60_RS14315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS14315 PF00989 PAS fold JRI60_RS14330 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS14330 PF00107 Zinc-binding dehydrogenase JRI60_RS14340 PF00171 Aldehyde dehydrogenase family JRI60_RS14345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_RS14345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_RS14345 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS14350 PF02803 Thiolase, C-terminal domain JRI60_RS14350 PF00108 Thiolase, N-terminal domain JRI60_RS14355 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS14355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS14355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS14360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS14360 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS14360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS14365 PF00501 AMP-binding enzyme JRI60_RS14380 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS14390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS14390 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS14390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS14395 PF01636 Phosphotransferase enzyme family JRI60_RS14430 PF01494 FAD binding domain JRI60_RS14435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS14435 PF03466 LysR substrate binding domain JRI60_RS14440 PF03334 Na+/H+ antiporter subunit JRI60_RS14445 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JRI60_RS14450 PF01899 Na+/H+ ion antiporter subunit JRI60_RS14455 PF00361 Proton-conducting membrane transporter JRI60_RS14460 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JRI60_RS14465 PF13244 Domain of unknown function (DUF4040) JRI60_RS14465 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JRI60_RS14465 PF00361 Proton-conducting membrane transporter JRI60_RS14465 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JRI60_RS14500 PF00873 AcrB/AcrD/AcrF family JRI60_RS14505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_RS14505 PF00529 HlyD membrane-fusion protein of T1SS JRI60_RS14515 PF03793 PASTA domain JRI60_RS14515 PF00069 Protein kinase domain JRI60_RS14520 PF01209 ubiE/COQ5 methyltransferase family JRI60_RS14525 PF13411 MerR HTH family regulatory protein JRI60_RS14540 PF03793 PASTA domain JRI60_RS14540 PF00069 Protein kinase domain JRI60_RS14555 PF07237 Protein of unknown function (DUF1428) JRI60_RS14595 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JRI60_RS14605 PF00069 Protein kinase domain JRI60_RS14615 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JRI60_RS14630 PF00082 Subtilase family JRI60_RS14630 PF09286 Pro-kumamolisin, activation domain JRI60_RS14635 PF03167 Uracil DNA glycosylase superfamily JRI60_RS14645 PF00672 HAMP domain JRI60_RS14645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS14645 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS14650 PF02333 Phytase JRI60_RS14655 PF01738 Dienelactone hydrolase family JRI60_RS14670 PF08448 PAS fold JRI60_RS14670 PF00672 HAMP domain JRI60_RS14670 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_RS14670 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS14670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS14685 PF04542 Sigma-70 region 2 JRI60_RS14685 PF08281 Sigma-70, region 4 JRI60_RS14690 PF03795 YCII-related domain JRI60_RS14695 PF01435 Peptidase family M48 JRI60_RS14700 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JRI60_RS14700 PF03173 Putative carbohydrate binding domain JRI60_RS14700 PF00728 Glycosyl hydrolase family 20, catalytic domain JRI60_RS14700 PF02838 Glycosyl hydrolase family 20, domain 2 JRI60_RS14715 PF00664 ABC transporter transmembrane region JRI60_RS14715 PF00005 ABC transporter JRI60_RS14720 PF00664 ABC transporter transmembrane region JRI60_RS14720 PF00005 ABC transporter JRI60_RS14725 PF02631 RecX family JRI60_RS14735 PF00691 OmpA family JRI60_RS14735 PF01389 OmpA-like transmembrane domain JRI60_RS14740 PF00707 Translation initiation factor IF-3, C-terminal domain JRI60_RS14740 PF05198 Translation initiation factor IF-3, N-terminal domain JRI60_RS14755 PF00067 Cytochrome P450 JRI60_RS14760 PF08534 Redoxin JRI60_RS14765 PF02654 Cobalamin-5-phosphate synthase JRI60_RS14770 PF02277 Phosphoribosyltransferase JRI60_RS14775 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JRI60_RS14775 PF07685 CobB/CobQ-like glutamine amidotransferase domain JRI60_RS14780 PF00155 Aminotransferase class I and II JRI60_RS14785 PF03186 CobD/Cbib protein JRI60_RS14790 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JRI60_RS14800 PF07685 CobB/CobQ-like glutamine amidotransferase domain JRI60_RS14800 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JRI60_RS14805 PF12557 Cob(I)alamin adenosyltransferase N terminal JRI60_RS14805 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JRI60_RS14810 PF10414 Sirohaem synthase dimerisation region JRI60_RS14810 PF14824 Sirohaem biosynthesis protein central JRI60_RS14810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_RS14815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_RS14825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JRI60_RS14825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_RS14830 PF11760 Cobalamin synthesis G N-terminal JRI60_RS14830 PF11761 Cobalamin biosynthesis central region JRI60_RS14830 PF01890 Cobalamin synthesis G C-terminus JRI60_RS14835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_RS14840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_RS14845 PF02570 Precorrin-8X methylmutase JRI60_RS14850 PF01888 CbiD JRI60_RS14865 PF01903 CbiX JRI60_RS14870 PF00005 ABC transporter JRI60_RS14885 PF01891 Cobalt uptake substrate-specific transmembrane region JRI60_RS14890 PF14592 Chondroitinase B JRI60_RS14915 PF00437 Type II/IV secretion system protein JRI60_RS14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS14950 PF02743 Cache domain JRI60_RS14950 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS14960 PF10282 Lactonase, 7-bladed beta-propeller JRI60_RS14970 PF03099 Biotin/lipoate A/B protein ligase family JRI60_RS14980 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) JRI60_RS14985 PF00361 Proton-conducting membrane transporter JRI60_RS14995 PF00916 Sulfate permease family JRI60_RS14995 PF01740 STAS domain JRI60_RS15000 PF04542 Sigma-70 region 2 JRI60_RS15000 PF08281 Sigma-70, region 4 JRI60_RS15005 PF00561 alpha/beta hydrolase fold JRI60_RS15010 PF13847 Methyltransferase domain JRI60_RS15010 PF03551 Transcriptional regulator PadR-like family JRI60_RS15020 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS15025 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS15025 PF03413 Peptidase propeptide and YPEB domain JRI60_RS15025 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS15025 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS15035 PF00975 Thioesterase domain JRI60_RS15040 PF00905 Penicillin binding protein transpeptidase domain JRI60_RS15040 PF00912 Transglycosylase JRI60_RS15040 PF06832 Penicillin-Binding Protein C-terminus Family JRI60_RS15045 PF07703 Alpha-2-macroglobulin bait region domain JRI60_RS15045 PF00207 Alpha-2-macroglobulin family JRI60_RS15045 PF01835 MG2 domain JRI60_RS15045 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JRI60_RS15055 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS15055 PF00107 Zinc-binding dehydrogenase JRI60_RS15060 PF13419 Haloacid dehalogenase-like hydrolase JRI60_RS15090 PF14245 Type IV pilin PilA JRI60_RS15090 PF07963 Prokaryotic N-terminal methylation motif JRI60_RS15095 PF00679 Elongation factor G C-terminus JRI60_RS15095 PF14492 Elongation Factor G, domain II JRI60_RS15095 PF00009 Elongation factor Tu GTP binding domain JRI60_RS15095 PF03764 Elongation factor G, domain IV JRI60_RS15100 PF16859 Tetracyclin repressor-like, C-terminal domain JRI60_RS15100 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS15105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS15120 PF10502 Signal peptidase, peptidase S26 JRI60_RS15125 PF00027 Cyclic nucleotide-binding domain JRI60_RS15125 PF13302 Acetyltransferase (GNAT) domain JRI60_RS15170 PF00106 short chain dehydrogenase JRI60_RS15185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS15185 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS15195 PF13520 Amino acid permease JRI60_RS15200 PF02146 Sir2 family JRI60_RS15225 PF00465 Iron-containing alcohol dehydrogenase JRI60_RS15240 PF00149 Calcineurin-like phosphoesterase JRI60_RS15245 PF00912 Transglycosylase JRI60_RS15270 PF03705 CheR methyltransferase, all-alpha domain JRI60_RS15270 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS15280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS15280 PF17200 Single Cache domain 2 JRI60_RS15280 PF00672 HAMP domain JRI60_RS15285 PF00072 Response regulator receiver domain JRI60_RS15285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS15285 PF01584 CheW-like domain JRI60_RS15285 PF01627 Hpt domain JRI60_RS15290 PF00072 Response regulator receiver domain JRI60_RS15290 PF01339 CheB methylesterase JRI60_RS15295 PF00072 Response regulator receiver domain JRI60_RS15295 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS15355 PF01965 DJ-1/PfpI family JRI60_RS15360 PF13419 Haloacid dehalogenase-like hydrolase JRI60_RS15365 PF08497 Radical SAM N-terminal JRI60_RS15365 PF11842 Domain of unknown function (DUF3362) JRI60_RS15365 PF04055 Radical SAM superfamily JRI60_RS15375 PF03705 CheR methyltransferase, all-alpha domain JRI60_RS15375 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS15380 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS15380 PF01627 Hpt domain JRI60_RS15380 PF00072 Response regulator receiver domain JRI60_RS15380 PF00672 HAMP domain JRI60_RS15380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS15385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS15385 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS15385 PF12833 Helix-turn-helix domain JRI60_RS15385 PF07495 Y_Y_Y domain JRI60_RS15385 PF07494 Two component regulator propeller JRI60_RS15385 PF00072 Response regulator receiver domain JRI60_RS15400 PF04241 Protein of unknown function (DUF423) JRI60_RS15410 PF00326 Prolyl oligopeptidase family JRI60_RS15410 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JRI60_RS15410 PF07676 WD40-like Beta Propeller Repeat JRI60_RS15420 PF02525 Flavodoxin-like fold JRI60_RS15425 PF00266 Aminotransferase class-V JRI60_RS15430 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS15435 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_RS15450 PF04542 Sigma-70 region 2 JRI60_RS15450 PF08281 Sigma-70, region 4 JRI60_RS15480 PF02127 Aminopeptidase I zinc metalloprotease (M18) JRI60_RS15485 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS15485 PF00072 Response regulator receiver domain JRI60_RS15490 PF08447 PAS fold JRI60_RS15490 PF08448 PAS fold JRI60_RS15490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS15495 PF17820 PDZ domain JRI60_RS15495 PF13180 PDZ domain JRI60_RS15500 PF00067 Cytochrome P450 JRI60_RS15505 PF17760 UvrA interaction domain JRI60_RS15505 PF17755 UvrA DNA-binding domain JRI60_RS15560 PF03793 PASTA domain JRI60_RS15560 PF00069 Protein kinase domain JRI60_RS15565 PF00069 Protein kinase domain JRI60_RS15565 PF03793 PASTA domain JRI60_RS15570 PF00282 Pyridoxal-dependent decarboxylase conserved domain JRI60_RS15585 PF02335 Cytochrome c552 JRI60_RS15625 PF00578 AhpC/TSA family JRI60_RS15630 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JRI60_RS15650 PF01555 DNA methylase JRI60_RS15655 PF00375 Sodium:dicarboxylate symporter family JRI60_RS15660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_RS15680 PF08241 Methyltransferase domain JRI60_RS15685 PF12848 ABC transporter JRI60_RS15685 PF00005 ABC transporter JRI60_RS15690 PF12848 ABC transporter JRI60_RS15690 PF16326 ABC transporter C-terminal domain JRI60_RS15690 PF00005 ABC transporter JRI60_RS15695 PF00271 Helicase conserved C-terminal domain JRI60_RS15695 PF00270 DEAD/DEAH box helicase JRI60_RS15700 PF03764 Elongation factor G, domain IV JRI60_RS15700 PF14492 Elongation Factor G, domain II JRI60_RS15700 PF03144 Elongation factor Tu domain 2 JRI60_RS15700 PF00679 Elongation factor G C-terminus JRI60_RS15700 PF00009 Elongation factor Tu GTP binding domain JRI60_RS15710 PF01479 S4 domain JRI60_RS15710 PF00849 RNA pseudouridylate synthase JRI60_RS15730 PF00588 SpoU rRNA Methylase family JRI60_RS15740 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JRI60_RS15740 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JRI60_RS15740 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JRI60_RS15740 PF17962 Bacterial macroglobulin domain 6 JRI60_RS15740 PF01835 MG2 domain JRI60_RS15740 PF00207 Alpha-2-macroglobulin family JRI60_RS15740 PF07703 Alpha-2-macroglobulin bait region domain JRI60_RS15745 PF00072 Response regulator receiver domain JRI60_RS15745 PF13188 PAS domain JRI60_RS15745 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS15745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS15745 PF08448 PAS fold JRI60_RS15750 PF00072 Response regulator receiver domain JRI60_RS15755 PF08446 PAS fold JRI60_RS15755 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS15755 PF00360 Phytochrome region JRI60_RS15755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS15755 PF01590 GAF domain JRI60_RS15760 PF00989 PAS fold JRI60_RS15760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS15760 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS15765 PF16124 RecQ zinc-binding JRI60_RS15765 PF00270 DEAD/DEAH box helicase JRI60_RS15765 PF09382 RQC domain JRI60_RS15765 PF00271 Helicase conserved C-terminal domain JRI60_RS15765 PF00570 HRDC domain JRI60_RS15770 PF18417 L-lysine epsilon oxidase C-terminal domain JRI60_RS15770 PF17990 L-Lysine epsilon oxidase N-terminal JRI60_RS15775 PF01494 FAD binding domain JRI60_RS15785 PF00912 Transglycosylase JRI60_RS15785 PF06832 Penicillin-Binding Protein C-terminus Family JRI60_RS15785 PF00905 Penicillin binding protein transpeptidase domain JRI60_RS15800 PF01593 Flavin containing amine oxidoreductase JRI60_RS15810 PF13091 PLD-like domain JRI60_RS15810 PF13396 Phospholipase_D-nuclease N-terminal JRI60_RS15845 PF00563 EAL domain JRI60_RS15845 PF12792 CSS motif domain associated with EAL JRI60_RS15865 PF02687 FtsX-like permease family JRI60_RS15865 PF00005 ABC transporter JRI60_RS15865 PF12704 MacB-like periplasmic core domain JRI60_RS15875 PF00005 ABC transporter JRI60_RS15910 PF04539 Sigma-70 region 3 JRI60_RS15910 PF04545 Sigma-70, region 4 JRI60_RS15910 PF04542 Sigma-70 region 2 JRI60_RS15920 PF01514 Secretory protein of YscJ/FliF family JRI60_RS15920 PF08345 Flagellar M-ring protein C-terminal JRI60_RS15930 PF02108 Flagellar assembly protein FliH JRI60_RS15935 PF18269 T3SS EscN ATPase C-terminal domain JRI60_RS15935 PF02874 ATP synthase alpha/beta family, beta-barrel domain JRI60_RS15935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JRI60_RS15950 PF04509 CheC-like family JRI60_RS15950 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JRI60_RS15960 PF00813 FliP family JRI60_RS15965 PF01313 Bacterial export proteins, family 3 JRI60_RS15970 PF01311 Bacterial export proteins, family 1 JRI60_RS15975 PF01312 FlhB HrpN YscU SpaS Family JRI60_RS15980 PF01312 FlhB HrpN YscU SpaS Family JRI60_RS16025 PF00771 FHIPEP family JRI60_RS16035 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_RS16065 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS16070 PF00069 Protein kinase domain JRI60_RS16070 PF03793 PASTA domain JRI60_RS16080 PF00106 short chain dehydrogenase JRI60_RS16085 PF00425 chorismate binding enzyme JRI60_RS16090 PF00501 AMP-binding enzyme JRI60_RS16090 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS16095 PF00857 Isochorismatase family JRI60_RS16095 PF00550 Phosphopantetheine attachment site JRI60_RS16100 PF00550 Phosphopantetheine attachment site JRI60_RS16100 PF00501 AMP-binding enzyme JRI60_RS16100 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS16100 PF00668 Condensation domain JRI60_RS16100 PF00975 Thioesterase domain JRI60_RS16105 PF01474 Class-II DAHP synthetase family JRI60_RS16120 PF01618 MotA/TolQ/ExbB proton channel family JRI60_RS16125 PF02472 Biopolymer transport protein ExbD/TolR JRI60_RS16140 PF00069 Protein kinase domain JRI60_RS16140 PF03793 PASTA domain JRI60_RS16145 PF00069 Protein kinase domain JRI60_RS16145 PF03793 PASTA domain JRI60_RS16165 PF17863 AAA lid domain JRI60_RS16165 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_RS16185 PF12849 PBP superfamily domain JRI60_RS16190 PF00593 TonB dependent receptor JRI60_RS16190 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS16195 PF00072 Response regulator receiver domain JRI60_RS16195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS16195 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS16195 PF08448 PAS fold JRI60_RS16195 PF13188 PAS domain JRI60_RS16215 PF13538 UvrD-like helicase C-terminal domain JRI60_RS16235 PF00107 Zinc-binding dehydrogenase JRI60_RS16235 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS16235 PF08659 KR domain JRI60_RS16235 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS16235 PF00698 Acyl transferase domain JRI60_RS16235 PF14765 Polyketide synthase dehydratase JRI60_RS16235 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS16235 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS16235 PF00550 Phosphopantetheine attachment site JRI60_RS16250 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_RS16250 PF00571 CBS domain JRI60_RS16255 PF00462 Glutaredoxin JRI60_RS16270 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS16270 PF00072 Response regulator receiver domain JRI60_RS16275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS16275 PF07730 Histidine kinase JRI60_RS16280 PF00069 Protein kinase domain JRI60_RS16285 PF07497 Rho termination factor, RNA-binding domain JRI60_RS16285 PF07498 Rho termination factor, N-terminal domain JRI60_RS16285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JRI60_RS16290 PF01343 Peptidase family S49 JRI60_RS16305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS16305 PF00204 DNA gyrase B JRI60_RS16305 PF00986 DNA gyrase B subunit, carboxyl terminus JRI60_RS16305 PF01751 Toprim domain JRI60_RS16310 PF03989 DNA gyrase C-terminal domain, beta-propeller JRI60_RS16310 PF00521 DNA gyrase/topoisomerase IV, subunit A JRI60_RS16320 PF00753 Metallo-beta-lactamase superfamily JRI60_RS16320 PF16123 Hydroxyacylglutathione hydrolase C-terminus JRI60_RS16330 PF10459 Peptidase S46 JRI60_RS16340 PF04542 Sigma-70 region 2 JRI60_RS16340 PF08281 Sigma-70, region 4 JRI60_RS16345 PF00158 Sigma-54 interaction domain JRI60_RS16345 PF00072 Response regulator receiver domain JRI60_RS16345 PF02954 Bacterial regulatory protein, Fis family JRI60_RS16385 PF02501 Type II secretion system (T2SS), protein I JRI60_RS16385 PF07963 Prokaryotic N-terminal methylation motif JRI60_RS16400 PF08334 Type II secretion system (T2SS), protein G JRI60_RS16400 PF07963 Prokaryotic N-terminal methylation motif JRI60_RS16410 PF00482 Type II secretion system (T2SS), protein F JRI60_RS16415 PF00437 Type II/IV secretion system protein JRI60_RS16420 PF00263 Bacterial type II and III secretion system protein JRI60_RS16420 PF03958 Bacterial type II/III secretion system short domain JRI60_RS16430 PF00158 Sigma-54 interaction domain JRI60_RS16430 PF00072 Response regulator receiver domain JRI60_RS16430 PF02954 Bacterial regulatory protein, Fis family JRI60_RS16445 PF03150 Di-haem cytochrome c peroxidase JRI60_RS16445 PF00034 Cytochrome c JRI60_RS16475 PF01636 Phosphotransferase enzyme family JRI60_RS16510 PF00149 Calcineurin-like phosphoesterase JRI60_RS16510 PF02872 5'-nucleotidase, C-terminal domain JRI60_RS16510 PF00746 LPXTG cell wall anchor motif JRI60_RS16510 PF00565 Staphylococcal nuclease homologue JRI60_RS16515 PF06580 Histidine kinase JRI60_RS16515 PF13492 GAF domain JRI60_RS16515 PF07694 5TMR of 5TMR-LYT JRI60_RS16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS16520 PF00072 Response regulator receiver domain JRI60_RS16520 PF04397 LytTr DNA-binding domain JRI60_RS16535 PF04073 Aminoacyl-tRNA editing domain JRI60_RS16540 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JRI60_RS16540 PF02222 ATP-grasp domain JRI60_RS16545 PF00731 AIR carboxylase JRI60_RS16575 PF02504 Fatty acid synthesis protein JRI60_RS16605 PF13247 4Fe-4S dicluster domain JRI60_RS16605 PF00037 4Fe-4S binding domain JRI60_RS16620 PF00384 Molybdopterin oxidoreductase JRI60_RS16620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JRI60_RS16620 PF01568 Molydopterin dinucleotide binding domain JRI60_RS16640 PF01931 Protein of unknown function DUF84 JRI60_RS16650 PF12627 Probable RNA and SrmB- binding site of polymerase A JRI60_RS16650 PF12626 Polymerase A arginine-rich C-terminus JRI60_RS16650 PF01743 Poly A polymerase head domain JRI60_RS16655 PF11799 impB/mucB/samB family C-terminal domain JRI60_RS16655 PF00817 impB/mucB/samB family JRI60_RS16665 PF00849 RNA pseudouridylate synthase JRI60_RS16670 PF07714 Protein tyrosine kinase JRI60_RS16675 PF00069 Protein kinase domain JRI60_RS16675 PF08308 PEGA domain JRI60_RS16680 PF01255 Putative undecaprenyl diphosphate synthase JRI60_RS16690 PF02163 Peptidase family M50 JRI60_RS16690 PF17820 PDZ domain JRI60_RS16695 PF03330 Lytic transglycolase JRI60_RS16700 PF00814 Glycoprotease family JRI60_RS16705 PF00672 HAMP domain JRI60_RS16705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS16715 PF01118 Semialdehyde dehydrogenase, NAD binding domain JRI60_RS16715 PF02774 Semialdehyde dehydrogenase, dimerisation domain JRI60_RS16735 PF02391 MoaE protein JRI60_RS16745 PF17820 PDZ domain JRI60_RS16745 PF02163 Peptidase family M50 JRI60_RS16750 PF13344 Haloacid dehalogenase-like hydrolase JRI60_RS16750 PF00293 NUDIX domain JRI60_RS16770 PF01351 Ribonuclease HII JRI60_RS16790 PF01029 NusB family JRI60_RS16790 PF01189 16S rRNA methyltransferase RsmB/F JRI60_RS16795 PF00149 Calcineurin-like phosphoesterase JRI60_RS16795 PF16656 Purple acid Phosphatase, N-terminal domain JRI60_RS16810 PF02223 Thymidylate kinase JRI60_RS16830 PF00069 Protein kinase domain JRI60_RS16835 PF00581 Rhodanese-like domain JRI60_RS16840 PF00899 ThiF family JRI60_RS16845 PF01521 Iron-sulphur cluster biosynthesis JRI60_RS16850 PF03061 Thioesterase superfamily JRI60_RS16860 PF03009 Glycerophosphoryl diester phosphodiesterase family JRI60_RS16870 PF00069 Protein kinase domain JRI60_RS16870 PF08308 PEGA domain JRI60_RS16895 PF13649 Methyltransferase domain JRI60_RS16905 PF02445 Quinolinate synthetase A protein JRI60_RS16915 PF08241 Methyltransferase domain JRI60_RS16920 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS16920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS16920 PF00072 Response regulator receiver domain JRI60_RS16920 PF13426 PAS domain JRI60_RS16920 PF08448 PAS fold JRI60_RS16930 PF00854 POT family JRI60_RS16935 PF00854 POT family JRI60_RS16955 PF00331 Glycosyl hydrolase family 10 JRI60_RS16955 PF00652 Ricin-type beta-trefoil lectin domain JRI60_RS16990 PF06441 Epoxide hydrolase N terminus JRI60_RS16995 PF08713 DNA alkylation repair enzyme JRI60_RS17030 PF03330 Lytic transglycolase JRI60_RS17040 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS17045 PF03466 LysR substrate binding domain JRI60_RS17045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS17075 PF01636 Phosphotransferase enzyme family JRI60_RS17100 PF01433 Peptidase family M1 domain JRI60_RS17105 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS17105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_RS17105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_RS17110 PF02803 Thiolase, C-terminal domain JRI60_RS17110 PF00108 Thiolase, N-terminal domain JRI60_RS17115 PF00873 AcrB/AcrD/AcrF family JRI60_RS17135 PF01624 MutS domain I JRI60_RS17135 PF00488 MutS domain V JRI60_RS17135 PF05190 MutS family domain IV JRI60_RS17135 PF05192 MutS domain III JRI60_RS17135 PF05188 MutS domain II JRI60_RS17140 PF13545 Crp-like helix-turn-helix domain JRI60_RS17140 PF00027 Cyclic nucleotide-binding domain JRI60_RS17145 PF00158 Sigma-54 interaction domain JRI60_RS17145 PF02954 Bacterial regulatory protein, Fis family JRI60_RS17145 PF00072 Response regulator receiver domain JRI60_RS17150 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS17150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS17150 PF00989 PAS fold JRI60_RS17170 PF08448 PAS fold JRI60_RS17170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS17170 PF13426 PAS domain JRI60_RS17170 PF00072 Response regulator receiver domain JRI60_RS17170 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS17190 PF04304 Protein of unknown function (DUF454) JRI60_RS17195 PF18089 DAPG hydrolase PhiG domain JRI60_RS17200 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS17200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS17200 PF08448 PAS fold JRI60_RS17200 PF00072 Response regulator receiver domain JRI60_RS17200 PF13426 PAS domain JRI60_RS17205 PF00535 Glycosyl transferase family 2 JRI60_RS17215 PF04349 Periplasmic glucan biosynthesis protein, MdoG JRI60_RS17220 PF00248 Aldo/keto reductase family JRI60_RS17245 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_RS17255 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JRI60_RS17260 PF01979 Amidohydrolase family JRI60_RS17265 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_RS17265 PF17785 PUA-like domain JRI60_RS17270 PF01627 Hpt domain JRI60_RS17270 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_RS17270 PF09078 CheY binding JRI60_RS17270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS17270 PF01584 CheW-like domain JRI60_RS17280 PF00072 Response regulator receiver domain JRI60_RS17280 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS17290 PF00069 Protein kinase domain JRI60_RS17295 PF01416 tRNA pseudouridine synthase JRI60_RS17315 PF03793 PASTA domain JRI60_RS17315 PF00069 Protein kinase domain JRI60_RS17320 PF01381 Helix-turn-helix JRI60_RS17320 PF07883 Cupin domain JRI60_RS17335 PF00069 Protein kinase domain JRI60_RS17335 PF03793 PASTA domain JRI60_RS17365 PF00893 Small Multidrug Resistance protein JRI60_RS17385 PF05661 Protein of unknown function (DUF808) JRI60_RS17405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS17405 PF03466 LysR substrate binding domain JRI60_RS17420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS17420 PF00360 Phytochrome region JRI60_RS17420 PF08446 PAS fold JRI60_RS17420 PF01590 GAF domain JRI60_RS17420 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS17455 PF04616 Glycosyl hydrolases family 43 JRI60_RS17455 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain JRI60_RS17460 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain JRI60_RS17460 PF04616 Glycosyl hydrolases family 43 JRI60_RS17470 PF00356 Bacterial regulatory proteins, lacI family JRI60_RS17475 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JRI60_RS17480 PF11762 L-arabinose isomerase C-terminal domain JRI60_RS17480 PF02610 L-arabinose isomerase JRI60_RS17485 PF13407 Periplasmic binding protein domain JRI60_RS17490 PF00005 ABC transporter JRI60_RS17495 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS17500 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS17505 PF00596 Class II Aldolase and Adducin N-terminal domain JRI60_RS17540 PF00011 Hsp20/alpha crystallin family JRI60_RS17545 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS17545 PF00043 Glutathione S-transferase, C-terminal domain JRI60_RS17575 PF08281 Sigma-70, region 4 JRI60_RS17575 PF04542 Sigma-70 region 2 JRI60_RS17590 PF00144 Beta-lactamase JRI60_RS17615 PF01695 IstB-like ATP binding protein JRI60_RS17620 PF00665 Integrase core domain JRI60_RS17640 PF03793 PASTA domain JRI60_RS17640 PF00069 Protein kinase domain JRI60_RS17655 PF03793 PASTA domain JRI60_RS17655 PF00069 Protein kinase domain JRI60_RS17685 PF00144 Beta-lactamase JRI60_RS17700 PF12697 Alpha/beta hydrolase family JRI60_RS17705 PF00043 Glutathione S-transferase, C-terminal domain JRI60_RS17705 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS17740 PF00069 Protein kinase domain JRI60_RS17760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_RS17760 PF00364 Biotin-requiring enzyme JRI60_RS17760 PF00289 Biotin carboxylase, N-terminal domain JRI60_RS17760 PF02785 Biotin carboxylase C-terminal domain JRI60_RS17770 PF12833 Helix-turn-helix domain JRI60_RS17770 PF01965 DJ-1/PfpI family JRI60_RS17805 PF00501 AMP-binding enzyme JRI60_RS17805 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS17845 PF00027 Cyclic nucleotide-binding domain JRI60_RS17845 PF13302 Acetyltransferase (GNAT) domain JRI60_RS17860 PF00593 TonB dependent receptor JRI60_RS17860 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS17870 PF17871 AAA lid domain JRI60_RS17870 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS17870 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS17870 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS17870 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_RS17895 PF07722 Peptidase C26 JRI60_RS17900 PF08543 Phosphomethylpyrimidine kinase JRI60_RS17905 PF00772 DnaB-like helicase N terminal domain JRI60_RS17905 PF03796 DnaB-like helicase C terminal domain JRI60_RS17910 PF03948 Ribosomal protein L9, C-terminal domain JRI60_RS17910 PF01281 Ribosomal protein L9, N-terminal domain JRI60_RS17915 PF01084 Ribosomal protein S18 JRI60_RS17920 PF01250 Ribosomal protein S6 JRI60_RS17925 PF01195 Peptidyl-tRNA hydrolase JRI60_RS17930 PF01386 Ribosomal L25p family JRI60_RS17930 PF14693 Ribosomal protein TL5, C-terminal domain JRI60_RS17935 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JRI60_RS17935 PF14572 Phosphoribosyl synthetase-associated domain JRI60_RS17940 PF04026 SpoVG JRI60_RS17950 PF00265 Thymidine kinase JRI60_RS17960 PF01171 PP-loop family JRI60_RS17960 PF00156 Phosphoribosyl transferase domain JRI60_RS17960 PF11734 TilS substrate C-terminal domain JRI60_RS17980 PF01678 Diaminopimelate epimerase JRI60_RS17985 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_RS17985 PF00072 Response regulator receiver domain JRI60_RS17985 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS17985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS17990 PF00072 Response regulator receiver domain JRI60_RS17990 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS17995 PF00593 TonB dependent receptor JRI60_RS17995 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS18005 PF08308 PEGA domain JRI60_RS18005 PF00069 Protein kinase domain JRI60_RS18010 PF08279 HTH domain JRI60_RS18010 PF13280 WYL domain JRI60_RS18035 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS18035 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS18035 PF03413 Peptidase propeptide and YPEB domain JRI60_RS18035 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS18055 PF00072 Response regulator receiver domain JRI60_RS18055 PF09308 LuxQ, periplasmic JRI60_RS18055 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS18055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS18060 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JRI60_RS18060 PF04616 Glycosyl hydrolases family 43 JRI60_RS18065 PF00067 Cytochrome P450 JRI60_RS18070 PF01627 Hpt domain JRI60_RS18070 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS18070 PF00672 HAMP domain JRI60_RS18070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS18070 PF00072 Response regulator receiver domain JRI60_RS18070 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_RS18100 PF04616 Glycosyl hydrolases family 43 JRI60_RS18100 PF03422 Carbohydrate binding module (family 6) JRI60_RS18120 PF00106 short chain dehydrogenase JRI60_RS18125 PF00301 Rubredoxin JRI60_RS18135 PF00675 Insulinase (Peptidase family M16) JRI60_RS18135 PF05193 Peptidase M16 inactive domain JRI60_RS18140 PF00989 PAS fold JRI60_RS18140 PF13188 PAS domain JRI60_RS18140 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS18140 PF13426 PAS domain JRI60_RS18160 PF01435 Peptidase family M48 JRI60_RS18165 PF01070 FMN-dependent dehydrogenase JRI60_RS18170 PF00368 Hydroxymethylglutaryl-coenzyme A reductase JRI60_RS18195 PF00107 Zinc-binding dehydrogenase JRI60_RS18195 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS18200 PF00248 Aldo/keto reductase family JRI60_RS18250 PF13677 Membrane MotB of proton-channel complex MotA/MotB JRI60_RS18250 PF00691 OmpA family JRI60_RS18255 PF01618 MotA/TolQ/ExbB proton channel family JRI60_RS18285 PF03466 LysR substrate binding domain JRI60_RS18285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS18300 PF00106 short chain dehydrogenase JRI60_RS18315 PF13286 Phosphohydrolase-associated domain JRI60_RS18315 PF01966 HD domain JRI60_RS18320 PF00857 Isochorismatase family JRI60_RS18330 PF00067 Cytochrome P450 JRI60_RS18340 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS18340 PF08359 YsiA-like protein, C-terminal region JRI60_RS18345 PF00067 Cytochrome P450 JRI60_RS18350 PF00672 HAMP domain JRI60_RS18350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS18350 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS18350 PF13426 PAS domain JRI60_RS18375 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS18380 PF00012 Hsp70 protein JRI60_RS18385 PF07743 HSCB C-terminal oligomerisation domain JRI60_RS18390 PF01521 Iron-sulphur cluster biosynthesis JRI60_RS18395 PF01592 NifU-like N terminal domain JRI60_RS18400 PF00266 Aminotransferase class-V JRI60_RS18420 PF00571 CBS domain JRI60_RS18420 PF01769 Divalent cation transporter JRI60_RS18420 PF03448 MgtE intracellular N domain JRI60_RS18470 PF07690 Major Facilitator Superfamily JRI60_RS18475 PF11412 Disulphide bond corrector protein DsbC JRI60_RS18475 PF02683 Cytochrome C biogenesis protein transmembrane region JRI60_RS18495 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS18500 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS18505 PF01547 Bacterial extracellular solute-binding protein JRI60_RS18540 PF01554 MatE JRI60_RS18545 PF06956 Regulator of RNA terminal phosphate cyclase JRI60_RS18545 PF00158 Sigma-54 interaction domain JRI60_RS18550 PF01139 tRNA-splicing ligase RtcB JRI60_RS18555 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain JRI60_RS18555 PF01137 RNA 3'-terminal phosphate cyclase JRI60_RS18570 PF01584 CheW-like domain JRI60_RS18570 PF00072 Response regulator receiver domain JRI60_RS18575 PF01709 Transcriptional regulator JRI60_RS18580 PF02075 Crossover junction endodeoxyribonuclease RuvC JRI60_RS18585 PF01330 RuvA N terminal domain JRI60_RS18585 PF07499 RuvA, C-terminal domain JRI60_RS18595 PF08443 RimK-like ATP-grasp domain JRI60_RS18595 PF18030 RimK PreATP-grasp domain JRI60_RS18610 PF00999 Sodium/hydrogen exchanger family JRI60_RS18615 PF00999 Sodium/hydrogen exchanger family JRI60_RS18650 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS18650 PF00107 Zinc-binding dehydrogenase JRI60_RS18655 PF17864 RuvB AAA lid domain JRI60_RS18655 PF05491 RuvB C-terminal winged helix domain JRI60_RS18655 PF05496 Holliday junction DNA helicase RuvB P-loop domain JRI60_RS18665 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JRI60_RS18670 PF13462 Thioredoxin JRI60_RS18670 PF06965 Na+/H+ antiporter 1 JRI60_RS18680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JRI60_RS18690 PF00883 Cytosol aminopeptidase family, catalytic domain JRI60_RS18690 PF02789 Cytosol aminopeptidase family, N-terminal domain JRI60_RS18700 PF01925 Sulfite exporter TauE/SafE JRI60_RS18725 PF09856 Predicted transcriptional regulator (DUF2083) JRI60_RS18725 PF06114 IrrE N-terminal-like domain JRI60_RS18725 PF01381 Helix-turn-helix JRI60_RS18740 PF05114 Protein of unknown function (DUF692) JRI60_RS18770 PF08281 Sigma-70, region 4 JRI60_RS18770 PF04542 Sigma-70 region 2 JRI60_RS18775 PF00266 Aminotransferase class-V JRI60_RS18785 PF05649 Peptidase family M13 JRI60_RS18785 PF01431 Peptidase family M13 JRI60_RS18795 PF04055 Radical SAM superfamily JRI60_RS18830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JRI60_RS18835 PF17827 PrmC N-terminal domain JRI60_RS18835 PF05175 Methyltransferase small domain JRI60_RS18840 PF03462 PCRF domain JRI60_RS18840 PF00472 RF-1 domain JRI60_RS18850 PF00571 CBS domain JRI60_RS18850 PF03471 Transporter associated domain JRI60_RS18850 PF01595 Cyclin M transmembrane N-terminal domain JRI60_RS18870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS18870 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS18880 PF00356 Bacterial regulatory proteins, lacI family JRI60_RS18895 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS18895 PF00107 Zinc-binding dehydrogenase JRI60_RS18900 PF03466 LysR substrate binding domain JRI60_RS18900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS18910 PF06470 SMC proteins Flexible Hinge Domain JRI60_RS18910 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS18925 PF02954 Bacterial regulatory protein, Fis family JRI60_RS18925 PF06506 Propionate catabolism activator JRI60_RS18925 PF00158 Sigma-54 interaction domain JRI60_RS18935 PF00462 Glutaredoxin JRI60_RS18940 PF00118 TCP-1/cpn60 chaperonin family JRI60_RS18945 PF00166 Chaperonin 10 Kd subunit JRI60_RS18960 PF00293 NUDIX domain JRI60_RS18965 PF01192 RNA polymerase Rpb6 JRI60_RS18970 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS18970 PF02743 Cache domain JRI60_RS18970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS18975 PF10086 YhfC intramembrane metalloprotease JRI60_RS18980 PF00795 Carbon-nitrogen hydrolase JRI60_RS18985 PF14525 AraC-binding-like domain JRI60_RS18990 PF13458 Periplasmic binding protein JRI60_RS18995 PF00083 Sugar (and other) transporter JRI60_RS19015 PF04542 Sigma-70 region 2 JRI60_RS19015 PF08281 Sigma-70, region 4 JRI60_RS19050 PF00005 ABC transporter JRI60_RS19055 PF01842 ACT domain JRI60_RS19055 PF13840 ACT domain JRI60_RS19055 PF00696 Amino acid kinase family JRI60_RS19090 PF00498 FHA domain JRI60_RS19135 PF02978 Signal peptide binding domain JRI60_RS19135 PF02881 SRP54-type protein, helical bundle domain JRI60_RS19135 PF00448 SRP54-type protein, GTPase domain JRI60_RS19145 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS19145 PF00550 Phosphopantetheine attachment site JRI60_RS19145 PF00501 AMP-binding enzyme JRI60_RS19145 PF00668 Condensation domain JRI60_RS19150 PF00668 Condensation domain JRI60_RS19150 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS19150 PF07993 Male sterility protein JRI60_RS19150 PF00550 Phosphopantetheine attachment site JRI60_RS19150 PF00501 AMP-binding enzyme JRI60_RS19155 PF00326 Prolyl oligopeptidase family JRI60_RS19165 PF00501 AMP-binding enzyme JRI60_RS19175 PF00535 Glycosyl transferase family 2 JRI60_RS19190 PF07993 Male sterility protein JRI60_RS19190 PF00668 Condensation domain JRI60_RS19190 PF00501 AMP-binding enzyme JRI60_RS19190 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS19190 PF00550 Phosphopantetheine attachment site JRI60_RS19200 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS19200 PF00668 Condensation domain JRI60_RS19200 PF00550 Phosphopantetheine attachment site JRI60_RS19200 PF00698 Acyl transferase domain JRI60_RS19200 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS19200 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS19220 PF00550 Phosphopantetheine attachment site JRI60_RS19220 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS19220 PF00501 AMP-binding enzyme JRI60_RS19220 PF07993 Male sterility protein JRI60_RS19220 PF00668 Condensation domain JRI60_RS19225 PF00221 Aromatic amino acid lyase JRI60_RS19230 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS19230 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS19230 PF00668 Condensation domain JRI60_RS19230 PF00698 Acyl transferase domain JRI60_RS19230 PF00550 Phosphopantetheine attachment site JRI60_RS19230 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS19305 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JRI60_RS19335 PF00501 AMP-binding enzyme JRI60_RS19335 PF00550 Phosphopantetheine attachment site JRI60_RS19335 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS19335 PF00668 Condensation domain JRI60_RS19365 PF00067 Cytochrome P450 JRI60_RS19370 PF12706 Beta-lactamase superfamily domain JRI60_RS19370 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain JRI60_RS19375 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS19375 PF00550 Phosphopantetheine attachment site JRI60_RS19375 PF00668 Condensation domain JRI60_RS19375 PF00501 AMP-binding enzyme JRI60_RS19380 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS19380 PF00501 AMP-binding enzyme JRI60_RS19380 PF00550 Phosphopantetheine attachment site JRI60_RS19380 PF00668 Condensation domain JRI60_RS19395 PF04389 Peptidase family M28 JRI60_RS19405 PF01595 Cyclin M transmembrane N-terminal domain JRI60_RS19405 PF00571 CBS domain JRI60_RS19405 PF03471 Transporter associated domain JRI60_RS19410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS19410 PF00072 Response regulator receiver domain JRI60_RS19410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS19410 PF00672 HAMP domain JRI60_RS19410 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS19410 PF01627 Hpt domain JRI60_RS19415 PF00149 Calcineurin-like phosphoesterase JRI60_RS19425 PF01895 PhoU domain JRI60_RS19430 PF00005 ABC transporter JRI60_RS19435 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS19440 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS19445 PF12849 PBP superfamily domain JRI60_RS19455 PF00072 Response regulator receiver domain JRI60_RS19455 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS19460 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_RS19475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS19475 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS19475 PF00989 PAS fold JRI60_RS19475 PF16736 Single Cache-like JRI60_RS19480 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS19480 PF00072 Response regulator receiver domain JRI60_RS19500 PF05552 Conserved TM helix JRI60_RS19500 PF00924 Mechanosensitive ion channel JRI60_RS19505 PF00723 Glycosyl hydrolases family 15 JRI60_RS19510 PF01783 Ribosomal L32p protein family JRI60_RS19515 PF02504 Fatty acid synthesis protein JRI60_RS19520 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_RS19520 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_RS19525 PF00698 Acyl transferase domain JRI60_RS19535 PF00550 Phosphopantetheine attachment site JRI60_RS19540 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS19540 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS19545 PF02502 Ribose/Galactose Isomerase JRI60_RS19550 PF00464 Serine hydroxymethyltransferase JRI60_RS19555 PF03477 ATP cone domain JRI60_RS19560 PF01872 RibD C-terminal domain JRI60_RS19560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JRI60_RS19595 PF00067 Cytochrome P450 JRI60_RS19605 PF13488 Glycine zipper JRI60_RS19605 PF00691 OmpA family JRI60_RS19610 PF12697 Alpha/beta hydrolase family JRI60_RS19620 PF12697 Alpha/beta hydrolase family JRI60_RS19655 PF00677 Lumazine binding domain JRI60_RS19660 PF00925 GTP cyclohydrolase II JRI60_RS19660 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JRI60_RS19665 PF00885 6,7-dimethyl-8-ribityllumazine synthase JRI60_RS19670 PF01029 NusB family JRI60_RS19680 PF00072 Response regulator receiver domain JRI60_RS19685 PF00072 Response regulator receiver domain JRI60_RS19685 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_RS19685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS19685 PF01627 Hpt domain JRI60_RS19685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS19685 PF01584 CheW-like domain JRI60_RS19685 PF02895 Signal transducing histidine kinase, homodimeric domain JRI60_RS19685 PF01584 CheW-like domain JRI60_RS19685 PF00072 Response regulator receiver domain JRI60_RS19685 PF01627 Hpt domain JRI60_RS19690 PF01584 CheW-like domain JRI60_RS19695 PF01584 CheW-like domain JRI60_RS19705 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS19705 PF03705 CheR methyltransferase, all-alpha domain JRI60_RS19710 PF00072 Response regulator receiver domain JRI60_RS19710 PF01339 CheB methylesterase JRI60_RS19720 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_RS19725 PF00072 Response regulator receiver domain JRI60_RS19730 PF00248 Aldo/keto reductase family JRI60_RS19735 PF03942 DTW domain JRI60_RS19760 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JRI60_RS19760 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JRI60_RS19760 PF06827 Zinc finger found in FPG and IleRS JRI60_RS19770 PF00072 Response regulator receiver domain JRI60_RS19775 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_RS19775 PF08264 Anticodon-binding domain of tRNA JRI60_RS19775 PF09334 tRNA synthetases class I (M) JRI60_RS19775 PF13603 Leucyl-tRNA synthetase, Domain 2 JRI60_RS19790 PF01649 Ribosomal protein S20 JRI60_RS19795 PF03819 MazG nucleotide pyrophosphohydrolase domain JRI60_RS19805 PF14332 Domain of unknown function (DUF4388) JRI60_RS19805 PF01978 Sugar-specific transcriptional regulator TrmB JRI60_RS19810 PF02562 PhoH-like protein JRI60_RS19815 PF07698 7TM receptor with intracellular HD hydrolase JRI60_RS19815 PF01966 HD domain JRI60_RS19815 PF07697 7TM-HD extracellular JRI60_RS19820 PF07883 Cupin domain JRI60_RS19820 PF02130 Uncharacterized protein family UPF0054 JRI60_RS19835 PF01047 MarR family JRI60_RS19850 PF06580 Histidine kinase JRI60_RS19850 PF07694 5TMR of 5TMR-LYT JRI60_RS19855 PF00072 Response regulator receiver domain JRI60_RS19855 PF04397 LytTr DNA-binding domain JRI60_RS19870 PF08281 Sigma-70, region 4 JRI60_RS19870 PF04542 Sigma-70 region 2 JRI60_RS19885 PF01336 OB-fold nucleic acid binding domain JRI60_RS19885 PF00152 tRNA synthetases class II (D, K and N) JRI60_RS19890 PF12704 MacB-like periplasmic core domain JRI60_RS19890 PF02687 FtsX-like permease family JRI60_RS19895 PF00005 ABC transporter JRI60_RS19900 PF07244 Surface antigen variable number repeat JRI60_RS19900 PF01103 Surface antigen JRI60_RS19910 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JRI60_RS19910 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_RS19915 PF07977 FabA-like domain JRI60_RS19920 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_RS19920 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JRI60_RS19940 PF01914 MarC family integral membrane protein JRI60_RS19945 PF00535 Glycosyl transferase family 2 JRI60_RS19950 PF02684 Lipid-A-disaccharide synthetase JRI60_RS19965 PF00583 Acetyltransferase (GNAT) family JRI60_RS19975 PF00005 ABC transporter JRI60_RS19975 PF00664 ABC transporter transmembrane region JRI60_RS19985 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS19985 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS19985 PF03413 Peptidase propeptide and YPEB domain JRI60_RS19985 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS19985 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_RS19990 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JRI60_RS20000 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JRI60_RS20005 PF01467 Cytidylyltransferase-like JRI60_RS20005 PF00294 pfkB family carbohydrate kinase JRI60_RS20010 PF00294 pfkB family carbohydrate kinase JRI60_RS20010 PF01467 Cytidylyltransferase-like JRI60_RS20015 PF03966 Trm112p-like protein JRI60_RS20025 PF03755 YicC-like family, N-terminal region JRI60_RS20025 PF08340 Domain of unknown function (DUF1732) JRI60_RS20030 PF00625 Guanylate kinase JRI60_RS20060 PF00069 Protein kinase domain JRI60_RS20065 PF04055 Radical SAM superfamily JRI60_RS20065 PF12544 Lysine-2,3-aminomutase JRI60_RS20070 PF12544 Lysine-2,3-aminomutase JRI60_RS20070 PF04055 Radical SAM superfamily JRI60_RS20090 PF08486 Stage II sporulation protein JRI60_RS20095 PF02547 Queuosine biosynthesis protein JRI60_RS20100 PF01702 Queuine tRNA-ribosyltransferase JRI60_RS20105 PF02699 Preprotein translocase subunit JRI60_RS20110 PF02355 Protein export membrane protein JRI60_RS20110 PF07549 SecD/SecF GG Motif JRI60_RS20115 PF02355 Protein export membrane protein JRI60_RS20115 PF07549 SecD/SecF GG Motif JRI60_RS20125 PF01368 DHH family JRI60_RS20125 PF02272 DHHA1 domain JRI60_RS20125 PF17768 RecJ OB domain JRI60_RS20125 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JRI60_RS20145 PF02938 GAD domain JRI60_RS20145 PF00152 tRNA synthetases class II (D, K and N) JRI60_RS20145 PF01336 OB-fold nucleic acid binding domain JRI60_RS20150 PF00781 Diacylglycerol kinase catalytic domain JRI60_RS20165 PF01713 Smr domain JRI60_RS20165 PF00488 MutS domain V JRI60_RS20170 PF00271 Helicase conserved C-terminal domain JRI60_RS20170 PF00176 SNF2 family N-terminal domain JRI60_RS20190 PF17863 AAA lid domain JRI60_RS20190 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_RS20200 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JRI60_RS20205 PF00072 Response regulator receiver domain JRI60_RS20205 PF01966 HD domain JRI60_RS20210 PF01113 Dihydrodipicolinate reductase, N-terminus JRI60_RS20215 PF13452 N-terminal half of MaoC dehydratase JRI60_RS20225 PF12806 Acetyl-CoA dehydrogenase C-terminal like JRI60_RS20225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS20225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS20225 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS20235 PF01618 MotA/TolQ/ExbB proton channel family JRI60_RS20255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JRI60_RS20255 PF00005 ABC transporter JRI60_RS20260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JRI60_RS20260 PF00005 ABC transporter JRI60_RS20270 PF04545 Sigma-70, region 4 JRI60_RS20270 PF04542 Sigma-70 region 2 JRI60_RS20330 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_RS20340 PF02601 Exonuclease VII, large subunit JRI60_RS20340 PF13742 OB-fold nucleic acid binding domain JRI60_RS20350 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS20350 PF00072 Response regulator receiver domain JRI60_RS20355 PF00348 Polyprenyl synthetase JRI60_RS20360 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JRI60_RS20360 PF02780 Transketolase, C-terminal domain JRI60_RS20360 PF02779 Transketolase, pyrimidine binding domain JRI60_RS20365 PF01479 S4 domain JRI60_RS20365 PF01728 FtsJ-like methyltransferase JRI60_RS20385 PF07238 PilZ domain JRI60_RS20385 PF00069 Protein kinase domain JRI60_RS20400 PF10400 Virulence activator alpha C-term JRI60_RS20400 PF03551 Transcriptional regulator PadR-like family JRI60_RS20405 PF00795 Carbon-nitrogen hydrolase JRI60_RS20415 PF00069 Protein kinase domain JRI60_RS20415 PF03793 PASTA domain JRI60_RS20430 PF00723 Glycosyl hydrolases family 15 JRI60_RS20440 PF00392 Bacterial regulatory proteins, gntR family JRI60_RS20440 PF00155 Aminotransferase class I and II JRI60_RS20450 PF01209 ubiE/COQ5 methyltransferase family JRI60_RS20485 PF13426 PAS domain JRI60_RS20485 PF08448 PAS fold JRI60_RS20485 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS20485 PF00072 Response regulator receiver domain JRI60_RS20485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS20525 PF00593 TonB dependent receptor JRI60_RS20525 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS20555 PF03466 LysR substrate binding domain JRI60_RS20555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS20565 PF03793 PASTA domain JRI60_RS20565 PF00069 Protein kinase domain JRI60_RS20570 PF03466 LysR substrate binding domain JRI60_RS20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS20575 PF07690 Major Facilitator Superfamily JRI60_RS20610 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_RS20625 PF00305 Lipoxygenase JRI60_RS20640 PF00672 HAMP domain JRI60_RS20640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS20640 PF18698 Histidine kinase sensor domain JRI60_RS20640 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS20680 PF12146 Serine aminopeptidase, S33 JRI60_RS20700 PF00691 OmpA family JRI60_RS20700 PF05736 OprF membrane domain JRI60_RS20705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS20705 PF13426 PAS domain JRI60_RS20705 PF08448 PAS fold JRI60_RS20705 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS20705 PF00072 Response regulator receiver domain JRI60_RS20740 PF00156 Phosphoribosyl transferase domain JRI60_RS20750 PF03641 Possible lysine decarboxylase JRI60_RS20755 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JRI60_RS20755 PF01694 Rhomboid family JRI60_RS20760 PF02910 Fumarate reductase flavoprotein C-term JRI60_RS20760 PF00890 FAD binding domain JRI60_RS20765 PF01464 Transglycosylase SLT domain JRI60_RS20775 PF01066 CDP-alcohol phosphatidyltransferase JRI60_RS20790 PF01061 ABC-2 type transporter JRI60_RS20795 PF00005 ABC transporter JRI60_RS20795 PF14524 Wzt C-terminal domain JRI60_RS20830 PF16363 GDP-mannose 4,6 dehydratase JRI60_RS20835 PF04321 RmlD substrate binding domain JRI60_RS20845 PF13439 Glycosyltransferase Family 4 JRI60_RS20845 PF00534 Glycosyl transferases group 1 JRI60_RS20850 PF16363 GDP-mannose 4,6 dehydratase JRI60_RS20855 PF00483 Nucleotidyl transferase JRI60_RS20860 PF01370 NAD dependent epimerase/dehydratase family JRI60_RS20865 PF00483 Nucleotidyl transferase JRI60_RS20870 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JRI60_RS20880 PF03631 Virulence factor BrkB JRI60_RS20885 PF12848 ABC transporter JRI60_RS20885 PF00005 ABC transporter JRI60_RS20915 PF03793 PASTA domain JRI60_RS20915 PF00069 Protein kinase domain JRI60_RS20940 PF01702 Queuine tRNA-ribosyltransferase JRI60_RS20965 PF01040 UbiA prenyltransferase family JRI60_RS20975 PF00311 Phosphoenolpyruvate carboxylase JRI60_RS20985 PF06155 Protein of unknown function (DUF971) JRI60_RS20985 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JRI60_RS21005 PF02780 Transketolase, C-terminal domain JRI60_RS21005 PF02779 Transketolase, pyrimidine binding domain JRI60_RS21010 PF00676 Dehydrogenase E1 component JRI60_RS21015 PF00672 HAMP domain JRI60_RS21015 PF07228 Stage II sporulation protein E (SpoIIE) JRI60_RS21030 PF00593 TonB dependent receptor JRI60_RS21030 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS21040 PF00069 Protein kinase domain JRI60_RS21060 PF01266 FAD dependent oxidoreductase JRI60_RS21080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_RS21085 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JRI60_RS21085 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_RS21100 PF04116 Fatty acid hydroxylase superfamily JRI60_RS21105 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS21115 PF00664 ABC transporter transmembrane region JRI60_RS21115 PF00005 ABC transporter JRI60_RS21120 PF00550 Phosphopantetheine attachment site JRI60_RS21120 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS21120 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS21120 PF00501 AMP-binding enzyme JRI60_RS21120 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS21120 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS21120 PF00668 Condensation domain JRI60_RS21120 PF00202 Aminotransferase class-III JRI60_RS21125 PF12867 DinB superfamily JRI60_RS21125 PF03781 Sulfatase-modifying factor enzyme 1 JRI60_RS21130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JRI60_RS21130 PF01872 RibD C-terminal domain JRI60_RS21140 PF00925 GTP cyclohydrolase II JRI60_RS21145 PF00069 Protein kinase domain JRI60_RS21170 PF00012 Hsp70 protein JRI60_RS21230 PF00665 Integrase core domain JRI60_RS21240 PF00665 Integrase core domain JRI60_RS21245 PF01695 IstB-like ATP binding protein JRI60_RS21275 PF01695 IstB-like ATP binding protein JRI60_RS21280 PF00665 Integrase core domain JRI60_RS21285 PF01695 IstB-like ATP binding protein JRI60_RS21290 PF00665 Integrase core domain JRI60_RS21330 PF00072 Response regulator receiver domain JRI60_RS21335 PF00118 TCP-1/cpn60 chaperonin family JRI60_RS21340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS21340 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS21340 PF00989 PAS fold JRI60_RS21340 PF00072 Response regulator receiver domain JRI60_RS21340 PF01627 Hpt domain JRI60_RS21340 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_RS21350 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS21360 PF00072 Response regulator receiver domain JRI60_RS21360 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS21365 PF08264 Anticodon-binding domain of tRNA JRI60_RS21365 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_RS21365 PF10458 Valyl tRNA synthetase tRNA binding arm JRI60_RS21370 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JRI60_RS21370 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JRI60_RS21375 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase JRI60_RS21380 PF03061 Thioesterase superfamily JRI60_RS21385 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JRI60_RS21400 PF03747 ADP-ribosylglycohydrolase JRI60_RS21405 PF00113 Enolase, C-terminal TIM barrel domain JRI60_RS21405 PF03952 Enolase, N-terminal domain JRI60_RS21410 PF01975 Survival protein SurE JRI60_RS21415 PF08525 Opacity-associated protein A N-terminal motif JRI60_RS21415 PF01551 Peptidase family M23 JRI60_RS21415 PF01476 LysM domain JRI60_RS21430 PF00717 Peptidase S24-like JRI60_RS21430 PF01726 LexA DNA binding domain JRI60_RS21435 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS21435 PF13426 PAS domain JRI60_RS21435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS21435 PF00672 HAMP domain JRI60_RS21440 PF13188 PAS domain JRI60_RS21440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS21440 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS21440 PF08448 PAS fold JRI60_RS21440 PF00072 Response regulator receiver domain JRI60_RS21485 PF13632 Glycosyl transferase family group 2 JRI60_RS21485 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JRI60_RS21495 PF08448 PAS fold JRI60_RS21495 PF08447 PAS fold JRI60_RS21495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS21535 PF03055 Retinal pigment epithelial membrane protein JRI60_RS21555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS21555 PF03466 LysR substrate binding domain JRI60_RS21595 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JRI60_RS21595 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JRI60_RS21620 PF00069 Protein kinase domain JRI60_RS21620 PF08308 PEGA domain JRI60_RS21625 PF13180 PDZ domain JRI60_RS21625 PF17820 PDZ domain JRI60_RS21630 PF00072 Response regulator receiver domain JRI60_RS21630 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS21635 PF00491 Arginase family JRI60_RS21640 PF00698 Acyl transferase domain JRI60_RS21640 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS21640 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS21640 PF08659 KR domain JRI60_RS21640 PF00550 Phosphopantetheine attachment site JRI60_RS21640 PF14765 Polyketide synthase dehydratase JRI60_RS21640 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS21640 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS21645 PF03448 MgtE intracellular N domain JRI60_RS21645 PF00571 CBS domain JRI60_RS21645 PF01769 Divalent cation transporter JRI60_RS21650 PF03884 DNA gyrase inhibitor YacG JRI60_RS21670 PF01169 Uncharacterized protein family UPF0016 JRI60_RS21675 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS21675 PF18698 Histidine kinase sensor domain JRI60_RS21675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS21675 PF00672 HAMP domain JRI60_RS21675 PF00989 PAS fold JRI60_RS21740 PF02441 Flavoprotein JRI60_RS21740 PF04127 DNA / pantothenate metabolism flavoprotein JRI60_RS21745 PF13677 Membrane MotB of proton-channel complex MotA/MotB JRI60_RS21745 PF00691 OmpA family JRI60_RS21755 PF03167 Uracil DNA glycosylase superfamily JRI60_RS21770 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit JRI60_RS21780 PF02310 B12 binding domain JRI60_RS21780 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase JRI60_RS21785 PF03061 Thioesterase superfamily JRI60_RS21790 PF05853 beta-keto acid cleavage enzyme JRI60_RS21800 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JRI60_RS21810 PF00230 Major intrinsic protein JRI60_RS21815 PF01425 Amidase JRI60_RS21825 PF00149 Calcineurin-like phosphoesterase JRI60_RS21825 PF02872 5'-nucleotidase, C-terminal domain JRI60_RS21835 PF07690 Major Facilitator Superfamily JRI60_RS21845 PF03781 Sulfatase-modifying factor enzyme 1 JRI60_RS21855 PF00561 alpha/beta hydrolase fold JRI60_RS21860 PF08241 Methyltransferase domain JRI60_RS21885 PF13536 Putative multidrug resistance efflux transporter JRI60_RS21895 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase JRI60_RS21900 PF00067 Cytochrome P450 JRI60_RS21910 PF00691 OmpA family JRI60_RS21910 PF05736 OprF membrane domain JRI60_RS21925 PF07690 Major Facilitator Superfamily JRI60_RS21930 PF00501 AMP-binding enzyme JRI60_RS21930 PF00975 Thioesterase domain JRI60_RS21930 PF00550 Phosphopantetheine attachment site JRI60_RS21930 PF00668 Condensation domain JRI60_RS21930 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS21940 PF01817 Chorismate mutase type II JRI60_RS21940 PF00800 Prephenate dehydratase JRI60_RS21945 PF01757 Acyltransferase family JRI60_RS21955 PF00313 'Cold-shock' DNA-binding domain JRI60_RS21970 PF08000 Bacterial PH domain JRI60_RS21970 PF11724 YvbH-like oligomerisation region JRI60_RS21980 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS21980 PF00107 Zinc-binding dehydrogenase JRI60_RS21995 PF13382 Adenine deaminase C-terminal domain JRI60_RS21995 PF01979 Amidohydrolase family JRI60_RS22010 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS22010 PF03705 CheR methyltransferase, all-alpha domain JRI60_RS22015 PF00672 HAMP domain JRI60_RS22015 PF16591 Helical bimodular sensor domain JRI60_RS22015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS22025 PF00067 Cytochrome P450 JRI60_RS22030 PF00106 short chain dehydrogenase JRI60_RS22040 PF16859 Tetracyclin repressor-like, C-terminal domain JRI60_RS22040 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS22115 PF01039 Carboxyl transferase domain JRI60_RS22125 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS22125 PF13823 Alcohol dehydrogenase GroES-associated JRI60_RS22125 PF00107 Zinc-binding dehydrogenase JRI60_RS22145 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS22145 PF00593 TonB dependent receptor JRI60_RS22165 PF01171 PP-loop family JRI60_RS22165 PF11734 TilS substrate C-terminal domain JRI60_RS22170 PF06480 FtsH Extracellular JRI60_RS22170 PF17862 AAA+ lid domain JRI60_RS22170 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS22170 PF01434 Peptidase family M41 JRI60_RS22175 PF00809 Pterin binding enzyme JRI60_RS22180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JRI60_RS22180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JRI60_RS22180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JRI60_RS22180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JRI60_RS22185 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JRI60_RS22190 PF01648 4'-phosphopantetheinyl transferase superfamily JRI60_RS22195 PF03853 YjeF-related protein N-terminus JRI60_RS22195 PF01256 Carbohydrate kinase JRI60_RS22200 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JRI60_RS22205 PF03423 Carbohydrate binding domain (family 25) JRI60_RS22205 PF00041 Fibronectin type III domain JRI60_RS22205 PF03065 Glycosyl hydrolase family 57 JRI60_RS22210 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS22210 PF00072 Response regulator receiver domain JRI60_RS22215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS22215 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS22215 PF00989 PAS fold JRI60_RS22225 PF01979 Amidohydrolase family JRI60_RS22230 PF17391 Urocanase N-terminal domain JRI60_RS22230 PF01175 Urocanase Rossmann-like domain JRI60_RS22230 PF17392 Urocanase C-terminal domain JRI60_RS22235 PF00764 Arginosuccinate synthase JRI60_RS22255 PF10996 Beta-Casp domain JRI60_RS22255 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JRI60_RS22255 PF00753 Metallo-beta-lactamase superfamily JRI60_RS22260 PF14245 Type IV pilin PilA JRI60_RS22260 PF07963 Prokaryotic N-terminal methylation motif JRI60_RS22275 PF08534 Redoxin JRI60_RS22280 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JRI60_RS22280 PF01578 Cytochrome C assembly protein JRI60_RS22285 PF03100 CcmE JRI60_RS22295 PF01578 Cytochrome C assembly protein JRI60_RS22305 PF00005 ABC transporter JRI60_RS22365 PF02913 FAD linked oxidases, C-terminal domain JRI60_RS22365 PF01565 FAD binding domain JRI60_RS22380 PF00529 HlyD membrane-fusion protein of T1SS JRI60_RS22380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_RS22385 PF00873 AcrB/AcrD/AcrF family JRI60_RS22445 PF00849 RNA pseudouridylate synthase JRI60_RS22455 PF01266 FAD dependent oxidoreductase JRI60_RS22460 PF03033 Glycosyltransferase family 28 N-terminal domain JRI60_RS22480 PF00939 Sodium:sulfate symporter transmembrane region JRI60_RS22485 PF00155 Aminotransferase class I and II JRI60_RS22485 PF00392 Bacterial regulatory proteins, gntR family JRI60_RS22495 PF01062 Bestrophin, RFP-TM, chloride channel JRI60_RS22500 PF01474 Class-II DAHP synthetase family JRI60_RS22515 PF01370 NAD dependent epimerase/dehydratase family JRI60_RS22535 PF01799 [2Fe-2S] binding domain JRI60_RS22535 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS22540 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_RS22585 PF00561 alpha/beta hydrolase fold JRI60_RS22590 PF01544 CorA-like Mg2+ transporter protein JRI60_RS22600 PF00375 Sodium:dicarboxylate symporter family JRI60_RS22605 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS22605 PF03413 Peptidase propeptide and YPEB domain JRI60_RS22605 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS22605 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS22615 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_RS22615 PF17785 PUA-like domain JRI60_RS22645 PF00082 Subtilase family JRI60_RS22675 PF01553 Acyltransferase JRI60_RS22680 PF05746 DALR anticodon binding domain JRI60_RS22680 PF03485 Arginyl tRNA synthetase N terminal domain JRI60_RS22680 PF00750 tRNA synthetases class I (R) JRI60_RS22685 PF00989 PAS fold JRI60_RS22685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS22685 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS22695 PF01556 DnaJ C terminal domain JRI60_RS22695 PF00226 DnaJ domain JRI60_RS22700 PF09312 SurA N-terminal domain JRI60_RS22710 PF00164 Ribosomal protein S12/S23 JRI60_RS22715 PF00177 Ribosomal protein S7p/S5e JRI60_RS22720 PF03144 Elongation factor Tu domain 2 JRI60_RS22720 PF14492 Elongation Factor G, domain II JRI60_RS22720 PF00679 Elongation factor G C-terminus JRI60_RS22720 PF03764 Elongation factor G, domain IV JRI60_RS22720 PF00009 Elongation factor Tu GTP binding domain JRI60_RS22725 PF03143 Elongation factor Tu C-terminal domain JRI60_RS22725 PF03144 Elongation factor Tu domain 2 JRI60_RS22725 PF00009 Elongation factor Tu GTP binding domain JRI60_RS22730 PF00338 Ribosomal protein S10p/S20e JRI60_RS22735 PF00573 Ribosomal protein L4/L1 family JRI60_RS22740 PF00276 Ribosomal protein L23 JRI60_RS22745 PF00181 Ribosomal Proteins L2, RNA binding domain JRI60_RS22745 PF03947 Ribosomal Proteins L2, C-terminal domain JRI60_RS22750 PF00203 Ribosomal protein S19 JRI60_RS22755 PF00237 Ribosomal protein L22p/L17e JRI60_RS22760 PF00189 Ribosomal protein S3, C-terminal domain JRI60_RS22760 PF07650 KH domain JRI60_RS22765 PF00252 Ribosomal protein L16p/L10e JRI60_RS22770 PF00831 Ribosomal L29 protein JRI60_RS22775 PF00366 Ribosomal protein S17 JRI60_RS22780 PF00238 Ribosomal protein L14p/L23e JRI60_RS22785 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JRI60_RS22790 PF00281 Ribosomal protein L5 JRI60_RS22790 PF00673 ribosomal L5P family C-terminus JRI60_RS22795 PF00253 Ribosomal protein S14p/S29e JRI60_RS22800 PF00410 Ribosomal protein S8 JRI60_RS22805 PF00347 Ribosomal protein L6 JRI60_RS22810 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JRI60_RS22815 PF00333 Ribosomal protein S5, N-terminal domain JRI60_RS22815 PF03719 Ribosomal protein S5, C-terminal domain JRI60_RS22820 PF00327 Ribosomal protein L30p/L7e JRI60_RS22825 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JRI60_RS22830 PF00344 SecY translocase JRI60_RS22835 PF05191 Adenylate kinase, active site lid JRI60_RS22840 PF01176 Translation initiation factor 1A / IF-1 JRI60_RS22845 PF00444 Ribosomal protein L36 JRI60_RS22850 PF00416 Ribosomal protein S13/S18 JRI60_RS22855 PF00411 Ribosomal protein S11 JRI60_RS22860 PF00163 Ribosomal protein S4/S9 N-terminal domain JRI60_RS22860 PF01479 S4 domain JRI60_RS22875 PF01196 Ribosomal protein L17 JRI60_RS22905 PF00072 Response regulator receiver domain JRI60_RS22905 PF00158 Sigma-54 interaction domain JRI60_RS22905 PF02954 Bacterial regulatory protein, Fis family JRI60_RS22910 PF00892 EamA-like transporter family JRI60_RS22915 PF04227 Indigoidine synthase A like protein JRI60_RS22920 PF08446 PAS fold JRI60_RS22920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS22920 PF01590 GAF domain JRI60_RS22920 PF00360 Phytochrome region JRI60_RS22920 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS22925 PF00072 Response regulator receiver domain JRI60_RS22925 PF13188 PAS domain JRI60_RS22925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS22925 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS22925 PF08448 PAS fold JRI60_RS22930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS22930 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS22930 PF13188 PAS domain JRI60_RS22930 PF08448 PAS fold JRI60_RS22930 PF00072 Response regulator receiver domain JRI60_RS22950 PF01464 Transglycosylase SLT domain JRI60_RS22950 PF14718 Soluble lytic murein transglycosylase L domain JRI60_RS22975 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS22975 PF17158 Membrane-associated sensor, integral membrane domain JRI60_RS22990 PF05593 RHS Repeat JRI60_RS22990 PF03527 RHS protein JRI60_RS23000 PF03050 Transposase IS66 family JRI60_RS23000 PF13817 IS66 C-terminal element JRI60_RS23000 PF13007 Transposase C of IS166 homeodomain JRI60_RS23000 PF13005 zinc-finger binding domain of transposase IS66 JRI60_RS23020 PF03527 RHS protein JRI60_RS23020 PF05593 RHS Repeat JRI60_RS23040 PF01119 DNA mismatch repair protein, C-terminal domain JRI60_RS23040 PF08676 MutL C terminal dimerisation domain JRI60_RS23045 PF00561 alpha/beta hydrolase fold JRI60_RS23075 PF00069 Protein kinase domain JRI60_RS23085 PF13302 Acetyltransferase (GNAT) domain JRI60_RS23090 PF10282 Lactonase, 7-bladed beta-propeller JRI60_RS23105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS23105 PF03466 LysR substrate binding domain JRI60_RS23110 PF00753 Metallo-beta-lactamase superfamily JRI60_RS23110 PF16123 Hydroxyacylglutathione hydrolase C-terminus JRI60_RS23120 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS23120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS23140 PF00672 HAMP domain JRI60_RS23140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS23140 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS23160 PF08281 Sigma-70, region 4 JRI60_RS23160 PF04542 Sigma-70 region 2 JRI60_RS23165 PF00561 alpha/beta hydrolase fold JRI60_RS23170 PF00376 MerR family regulatory protein JRI60_RS23170 PF09278 MerR, DNA binding JRI60_RS23175 PF01494 FAD binding domain JRI60_RS23185 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_RS23190 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_RS23190 PF03449 Transcription elongation factor, N-terminal JRI60_RS23195 PF00271 Helicase conserved C-terminal domain JRI60_RS23195 PF17191 RecG wedge domain JRI60_RS23195 PF00270 DEAD/DEAH box helicase JRI60_RS23210 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS23210 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS23210 PF01483 Proprotein convertase P-domain JRI60_RS23210 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS23215 PF00072 Response regulator receiver domain JRI60_RS23215 PF09308 LuxQ, periplasmic JRI60_RS23215 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS23215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS23220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JRI60_RS23220 PF01411 tRNA synthetases class II (A) JRI60_RS23220 PF02272 DHHA1 domain JRI60_RS23245 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS23255 PF02223 Thymidylate kinase JRI60_RS23260 PF02464 Competence-damaged protein JRI60_RS23260 PF18146 Damage-inducible protein CinA KH domain JRI60_RS23260 PF00994 Probable molybdopterin binding domain JRI60_RS23265 PF13545 Crp-like helix-turn-helix domain JRI60_RS23265 PF00027 Cyclic nucleotide-binding domain JRI60_RS23275 PF13520 Amino acid permease JRI60_RS23280 PF00152 tRNA synthetases class II (D, K and N) JRI60_RS23280 PF01336 OB-fold nucleic acid binding domain JRI60_RS23285 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS23295 PF00698 Acyl transferase domain JRI60_RS23295 PF14765 Polyketide synthase dehydratase JRI60_RS23295 PF00550 Phosphopantetheine attachment site JRI60_RS23295 PF00107 Zinc-binding dehydrogenase JRI60_RS23295 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS23295 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS23295 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS23295 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS23295 PF08659 KR domain JRI60_RS23350 PF08308 PEGA domain JRI60_RS23350 PF00069 Protein kinase domain JRI60_RS23365 PF01451 Low molecular weight phosphotyrosine protein phosphatase JRI60_RS23390 PF01494 FAD binding domain JRI60_RS23400 PF01557 Fumarylacetoacetate (FAA) hydrolase family JRI60_RS23415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS23415 PF03466 LysR substrate binding domain JRI60_RS23440 PF07690 Major Facilitator Superfamily JRI60_RS23460 PF01709 Transcriptional regulator JRI60_RS23465 PF07963 Prokaryotic N-terminal methylation motif JRI60_RS23465 PF00114 Pilin (bacterial filament) JRI60_RS23475 PF13089 Polyphosphate kinase N-terminal domain JRI60_RS23475 PF17941 Polyphosphate kinase C-terminal domain 1 JRI60_RS23475 PF13090 Polyphosphate kinase C-terminal domain 2 JRI60_RS23475 PF02503 Polyphosphate kinase middle domain JRI60_RS23495 PF00704 Glycosyl hydrolases family 18 JRI60_RS23495 PF00041 Fibronectin type III domain JRI60_RS23500 PF13407 Periplasmic binding protein domain JRI60_RS23505 PF00005 ABC transporter JRI60_RS23510 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS23520 PF00553 Cellulose binding domain JRI60_RS23520 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_RS23525 PF04542 Sigma-70 region 2 JRI60_RS23525 PF08281 Sigma-70, region 4 JRI60_RS23530 PF00704 Glycosyl hydrolases family 18 JRI60_RS23530 PF00041 Fibronectin type III domain JRI60_RS23535 PF02838 Glycosyl hydrolase family 20, domain 2 JRI60_RS23535 PF00728 Glycosyl hydrolase family 20, catalytic domain JRI60_RS23535 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JRI60_RS23535 PF03173 Putative carbohydrate binding domain JRI60_RS23545 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JRI60_RS23545 PF02378 Phosphotransferase system, EIIC JRI60_RS23545 PF00367 phosphotransferase system, EIIB JRI60_RS23550 PF00381 PTS HPr component phosphorylation site JRI60_RS23550 PF05524 PEP-utilising enzyme, N-terminal JRI60_RS23550 PF00391 PEP-utilising enzyme, mobile domain JRI60_RS23550 PF02896 PEP-utilising enzyme, TIM barrel domain JRI60_RS23550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JRI60_RS23555 PF13580 SIS domain JRI60_RS23560 PF00392 Bacterial regulatory proteins, gntR family JRI60_RS23560 PF07702 UTRA domain JRI60_RS23565 PF01380 SIS domain JRI60_RS23570 PF01979 Amidohydrolase family JRI60_RS23575 PF02146 Sir2 family JRI60_RS23580 PF05368 NmrA-like family JRI60_RS23595 PF00067 Cytochrome P450 JRI60_RS23600 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS23600 PF13291 ACT domain JRI60_RS23610 PF02264 LamB porin JRI60_RS23615 PF01341 Glycosyl hydrolases family 6 JRI60_RS23620 PF00221 Aromatic amino acid lyase JRI60_RS23625 PF00696 Amino acid kinase family JRI60_RS23625 PF13840 ACT domain JRI60_RS23625 PF01842 ACT domain JRI60_RS23670 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS23670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS23670 PF00672 HAMP domain JRI60_RS23685 PF00580 UvrD/REP helicase N-terminal domain JRI60_RS23685 PF13361 UvrD-like helicase C-terminal domain JRI60_RS23690 PF00012 Hsp70 protein JRI60_RS23720 PF03741 Integral membrane protein TerC family JRI60_RS23725 PF01435 Peptidase family M48 JRI60_RS23735 PF00355 Rieske [2Fe-2S] domain JRI60_RS23755 PF00535 Glycosyl transferase family 2 JRI60_RS23765 PF01648 4'-phosphopantetheinyl transferase superfamily JRI60_RS23770 PF00975 Thioesterase domain JRI60_RS23775 PF00072 Response regulator receiver domain JRI60_RS23775 PF08448 PAS fold JRI60_RS23775 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS23775 PF13188 PAS domain JRI60_RS23775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS23780 PF03621 MbtH-like protein JRI60_RS23790 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS23790 PF00550 Phosphopantetheine attachment site JRI60_RS23790 PF00975 Thioesterase domain JRI60_RS23790 PF00501 AMP-binding enzyme JRI60_RS23790 PF00668 Condensation domain JRI60_RS23795 PF00501 AMP-binding enzyme JRI60_RS23795 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS23795 PF00668 Condensation domain JRI60_RS23795 PF00550 Phosphopantetheine attachment site JRI60_RS23795 PF00975 Thioesterase domain JRI60_RS23820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS23830 PF00877 NlpC/P60 family JRI60_RS23830 PF01476 LysM domain JRI60_RS23840 PF00698 Acyl transferase domain JRI60_RS23840 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS23840 PF08659 KR domain JRI60_RS23840 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS23840 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS23840 PF00550 Phosphopantetheine attachment site JRI60_RS23840 PF14765 Polyketide synthase dehydratase JRI60_RS23845 PF00501 AMP-binding enzyme JRI60_RS23845 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS23845 PF00668 Condensation domain JRI60_RS23845 PF00550 Phosphopantetheine attachment site JRI60_RS23850 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS23850 PF14765 Polyketide synthase dehydratase JRI60_RS23850 PF00698 Acyl transferase domain JRI60_RS23850 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS23850 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS23850 PF08659 KR domain JRI60_RS23850 PF00550 Phosphopantetheine attachment site JRI60_RS23855 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS23855 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS23855 PF08659 KR domain JRI60_RS23855 PF08990 Erythronolide synthase docking JRI60_RS23855 PF00698 Acyl transferase domain JRI60_RS23855 PF18369 Polyketide synthase dimerisation element domain JRI60_RS23855 PF00550 Phosphopantetheine attachment site JRI60_RS23855 PF00975 Thioesterase domain JRI60_RS23855 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS23860 PF00698 Acyl transferase domain JRI60_RS23860 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS23860 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS23860 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS23860 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS23860 PF00550 Phosphopantetheine attachment site JRI60_RS23860 PF08659 KR domain JRI60_RS23860 PF14765 Polyketide synthase dehydratase JRI60_RS23865 PF00975 Thioesterase domain JRI60_RS23865 PF00550 Phosphopantetheine attachment site JRI60_RS23865 PF00668 Condensation domain JRI60_RS23865 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS23865 PF00501 AMP-binding enzyme JRI60_RS23870 PF01557 Fumarylacetoacetate (FAA) hydrolase family JRI60_RS23880 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS23885 PF00107 Zinc-binding dehydrogenase JRI60_RS23885 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS23920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS23920 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS23920 PF00989 PAS fold JRI60_RS23920 PF16736 Single Cache-like JRI60_RS23930 PF00743 Flavin-binding monooxygenase-like JRI60_RS23945 PF13735 tRNA nucleotidyltransferase domain 2 putative JRI60_RS23945 PF01743 Poly A polymerase head domain JRI60_RS23945 PF12627 Probable RNA and SrmB- binding site of polymerase A JRI60_RS23965 PF01238 Phosphomannose isomerase type I JRI60_RS23980 PF01370 NAD dependent epimerase/dehydratase family JRI60_RS23985 PF16363 GDP-mannose 4,6 dehydratase JRI60_RS23990 PF00679 Elongation factor G C-terminus JRI60_RS23990 PF00009 Elongation factor Tu GTP binding domain JRI60_RS23990 PF03144 Elongation factor Tu domain 2 JRI60_RS23990 PF06421 GTP-binding protein LepA C-terminus JRI60_RS23995 PF10502 Signal peptidase, peptidase S26 JRI60_RS24005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JRI60_RS24005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JRI60_RS24010 PF01979 Amidohydrolase family JRI60_RS24015 PF00117 Glutamine amidotransferase class-I JRI60_RS24015 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JRI60_RS24040 PF00067 Cytochrome P450 JRI60_RS24050 PF00183 Hsp90 protein JRI60_RS24055 PF17678 Glycosyl hydrolase family 92 N-terminal domain JRI60_RS24055 PF07971 Glycosyl hydrolase family 92 JRI60_RS24060 PF00144 Beta-lactamase JRI60_RS24065 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JRI60_RS24065 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain JRI60_RS24085 PF00210 Ferritin-like domain JRI60_RS24095 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal JRI60_RS24095 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal JRI60_RS24105 PF12697 Alpha/beta hydrolase family JRI60_RS24120 PF00069 Protein kinase domain JRI60_RS24145 PF12697 Alpha/beta hydrolase family JRI60_RS24155 PF18370 Rhamnogalacturonan I lyases beta-sheet domain JRI60_RS24160 PF00005 ABC transporter JRI60_RS24160 PF12704 MacB-like periplasmic core domain JRI60_RS24160 PF02687 FtsX-like permease family JRI60_RS24175 PF02687 FtsX-like permease family JRI60_RS24175 PF12704 MacB-like periplasmic core domain JRI60_RS24175 PF00005 ABC transporter JRI60_RS24180 PF12704 MacB-like periplasmic core domain JRI60_RS24180 PF02687 FtsX-like permease family JRI60_RS24180 PF00005 ABC transporter JRI60_RS24195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS24195 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS24200 PF00158 Sigma-54 interaction domain JRI60_RS24200 PF00072 Response regulator receiver domain JRI60_RS24200 PF02954 Bacterial regulatory protein, Fis family JRI60_RS24205 PF00107 Zinc-binding dehydrogenase JRI60_RS24205 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS24225 PF17874 MalT-like TPR region JRI60_RS24225 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS24250 PF00156 Phosphoribosyl transferase domain JRI60_RS24250 PF05139 Erythromycin esterase JRI60_RS24285 PF01494 FAD binding domain JRI60_RS24290 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS24290 PF02909 Tetracyclin repressor-like, C-terminal domain JRI60_RS24305 PF00391 PEP-utilising enzyme, mobile domain JRI60_RS24305 PF00224 Pyruvate kinase, barrel domain JRI60_RS24305 PF02887 Pyruvate kinase, alpha/beta domain JRI60_RS24315 PF13361 UvrD-like helicase C-terminal domain JRI60_RS24315 PF00580 UvrD/REP helicase N-terminal domain JRI60_RS24330 PF00501 AMP-binding enzyme JRI60_RS24335 PF00285 Citrate synthase, C-terminal domain JRI60_RS24340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JRI60_RS24345 PF01761 3-dehydroquinate synthase JRI60_RS24350 PF01264 Chorismate synthase JRI60_RS24360 PF01202 Shikimate kinase JRI60_RS24360 PF01761 3-dehydroquinate synthase JRI60_RS24365 PF01209 ubiE/COQ5 methyltransferase family JRI60_RS24370 PF00793 DAHP synthetase I family JRI60_RS24370 PF18152 DAHP synthase ferredoxin-like domain JRI60_RS24375 PF00425 chorismate binding enzyme JRI60_RS24380 PF16582 Middle domain of thiamine pyrophosphate JRI60_RS24380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JRI60_RS24380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JRI60_RS24385 PF00561 alpha/beta hydrolase fold JRI60_RS24390 PF01040 UbiA prenyltransferase family JRI60_RS24395 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JRI60_RS24395 PF13378 Enolase C-terminal domain-like JRI60_RS24400 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS24400 PF00501 AMP-binding enzyme JRI60_RS24410 PF00437 Type II/IV secretion system protein JRI60_RS24430 PF01522 Polysaccharide deacetylase JRI60_RS24440 PF00180 Isocitrate/isopropylmalate dehydrogenase JRI60_RS24445 PF00056 lactate/malate dehydrogenase, NAD binding domain JRI60_RS24445 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JRI60_RS24450 PF02910 Fumarate reductase flavoprotein C-term JRI60_RS24450 PF00890 FAD binding domain JRI60_RS24455 PF13085 2Fe-2S iron-sulfur cluster binding domain JRI60_RS24455 PF13183 4Fe-4S dicluster domain JRI60_RS24460 PF08442 ATP-grasp domain JRI60_RS24460 PF00549 CoA-ligase JRI60_RS24465 PF00549 CoA-ligase JRI60_RS24465 PF02629 CoA binding domain JRI60_RS24470 PF00334 Nucleoside diphosphate kinase JRI60_RS24510 PF00665 Integrase core domain JRI60_RS24520 PF14552 Tautomerase enzyme JRI60_RS24525 PF03466 LysR substrate binding domain JRI60_RS24525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS24530 PF07690 Major Facilitator Superfamily JRI60_RS24535 PF00067 Cytochrome P450 JRI60_RS24540 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS24545 PF14759 Reductase C-terminal JRI60_RS24545 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS24550 PF09209 Tetracyclin repressor-like, C-terminal domain JRI60_RS24550 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS24560 PF00106 short chain dehydrogenase JRI60_RS24570 PF00743 Flavin-binding monooxygenase-like JRI60_RS24590 PF13191 AAA ATPase domain JRI60_RS24590 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS24600 PF04616 Glycosyl hydrolases family 43 JRI60_RS24605 PF05649 Peptidase family M13 JRI60_RS24605 PF01431 Peptidase family M13 JRI60_RS24620 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain JRI60_RS24620 PF12706 Beta-lactamase superfamily domain JRI60_RS24630 PF00005 ABC transporter JRI60_RS24630 PF00664 ABC transporter transmembrane region JRI60_RS24635 PF00668 Condensation domain JRI60_RS24635 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS24635 PF00550 Phosphopantetheine attachment site JRI60_RS24635 PF00501 AMP-binding enzyme JRI60_RS24640 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS24640 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS24640 PF00698 Acyl transferase domain JRI60_RS24640 PF00550 Phosphopantetheine attachment site JRI60_RS24640 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS24640 PF00668 Condensation domain JRI60_RS24645 PF00501 AMP-binding enzyme JRI60_RS24645 PF00550 Phosphopantetheine attachment site JRI60_RS24645 PF00668 Condensation domain JRI60_RS24645 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS24655 PF04101 Glycosyltransferase family 28 C-terminal domain JRI60_RS24665 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS24670 PF04055 Radical SAM superfamily JRI60_RS24675 PF00886 Ribosomal protein S16 JRI60_RS24685 PF01782 RimM N-terminal domain JRI60_RS24685 PF05239 PRC-barrel domain JRI60_RS24690 PF01746 tRNA (Guanine-1)-methyltransferase JRI60_RS24695 PF01245 Ribosomal protein L19 JRI60_RS24705 PF02021 Uncharacterised protein family UPF0102 JRI60_RS24710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_RS24720 PF08460 Bacterial SH3 domain JRI60_RS24720 PF01551 Peptidase family M23 JRI60_RS24725 PF02954 Bacterial regulatory protein, Fis family JRI60_RS24725 PF00072 Response regulator receiver domain JRI60_RS24725 PF00158 Sigma-54 interaction domain JRI60_RS24740 PF03023 Lipid II flippase MurJ JRI60_RS24745 PF00575 S1 RNA binding domain JRI60_RS24790 PF05491 RuvB C-terminal winged helix domain JRI60_RS24790 PF17864 RuvB AAA lid domain JRI60_RS24790 PF05496 Holliday junction DNA helicase RuvB P-loop domain JRI60_RS24805 PF11066 Protein of unknown function (DUF2867) JRI60_RS24805 PF13460 NAD(P)H-binding JRI60_RS24810 PF00487 Fatty acid desaturase JRI60_RS24815 PF00487 Fatty acid desaturase JRI60_RS24825 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS24825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS24845 PF00030 Beta/Gamma crystallin JRI60_RS24860 PF01547 Bacterial extracellular solute-binding protein JRI60_RS24895 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JRI60_RS24895 PF05221 S-adenosyl-L-homocysteine hydrolase JRI60_RS24900 PF07519 Tannase and feruloyl esterase JRI60_RS24915 PF00069 Protein kinase domain JRI60_RS24915 PF03793 PASTA domain JRI60_RS24935 PF07689 KaiB domain JRI60_RS24935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS24935 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS24945 PF00067 Cytochrome P450 JRI60_RS24950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS24950 PF00672 HAMP domain JRI60_RS24960 PF00067 Cytochrome P450 JRI60_RS24965 PF00989 PAS fold JRI60_RS24965 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS24965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS24970 PF12034 Domain of unknown function (DUF3520) JRI60_RS24970 PF00092 von Willebrand factor type A domain JRI60_RS24970 PF12450 von Willebrand factor JRI60_RS24985 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS24990 PF03851 UV-endonuclease UvdE JRI60_RS25000 PF00313 'Cold-shock' DNA-binding domain JRI60_RS25010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_RS25010 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JRI60_RS25030 PF01594 AI-2E family transporter JRI60_RS25035 PF03167 Uracil DNA glycosylase superfamily JRI60_RS25045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JRI60_RS25045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JRI60_RS25045 PF03129 Anticodon binding domain JRI60_RS25045 PF02824 TGS domain JRI60_RS25050 PF00707 Translation initiation factor IF-3, C-terminal domain JRI60_RS25050 PF05198 Translation initiation factor IF-3, N-terminal domain JRI60_RS25055 PF01632 Ribosomal protein L35 JRI60_RS25060 PF00453 Ribosomal protein L20 JRI60_RS25065 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JRI60_RS25065 PF01409 tRNA synthetases class II core domain (F) JRI60_RS25070 PF03483 B3/4 domain JRI60_RS25070 PF03484 tRNA synthetase B5 domain JRI60_RS25070 PF03147 Ferredoxin-fold anticodon binding domain JRI60_RS25070 PF01588 Putative tRNA binding domain JRI60_RS25070 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JRI60_RS25075 PF00216 Bacterial DNA-binding protein JRI60_RS25125 PF00027 Cyclic nucleotide-binding domain JRI60_RS25125 PF00520 Ion transport protein JRI60_RS25130 PF01183 Glycosyl hydrolases family 25 JRI60_RS25150 PF00589 Phage integrase family JRI60_RS25150 PF14659 Phage integrase, N-terminal SAM-like domain JRI60_RS25160 PF00069 Protein kinase domain JRI60_RS25160 PF03793 PASTA domain JRI60_RS25180 PF01695 IstB-like ATP binding protein JRI60_RS25185 PF00665 Integrase core domain JRI60_RS25190 PF01039 Carboxyl transferase domain JRI60_RS25205 PF10518 TAT (twin-arginine translocation) pathway signal sequence JRI60_RS25205 PF01799 [2Fe-2S] binding domain JRI60_RS25205 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS25210 PF00941 FAD binding domain in molybdopterin dehydrogenase JRI60_RS25210 PF03450 CO dehydrogenase flavoprotein C-terminal domain JRI60_RS25215 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_RS25215 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_RS25220 PF14521 Lysine-specific metallo-endopeptidase JRI60_RS25250 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS25255 PF00005 ABC transporter JRI60_RS25275 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS25280 PF00005 ABC transporter JRI60_RS25305 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_RS25305 PF08264 Anticodon-binding domain of tRNA JRI60_RS25335 PF00437 Type II/IV secretion system protein JRI60_RS25360 PF04294 VanW like protein JRI60_RS25370 PF00348 Polyprenyl synthetase JRI60_RS25430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS25430 PF03466 LysR substrate binding domain JRI60_RS25435 PF02525 Flavodoxin-like fold JRI60_RS25440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS25440 PF03466 LysR substrate binding domain JRI60_RS25445 PF00171 Aldehyde dehydrogenase family JRI60_RS25450 PF03466 LysR substrate binding domain JRI60_RS25450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS25470 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_RS25470 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS25470 PF00672 HAMP domain JRI60_RS25470 PF01627 Hpt domain JRI60_RS25470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS25470 PF00072 Response regulator receiver domain JRI60_RS25475 PF00465 Iron-containing alcohol dehydrogenase JRI60_RS25480 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS25485 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JRI60_RS25485 PF00391 PEP-utilising enzyme, mobile domain JRI60_RS25495 PF01522 Polysaccharide deacetylase JRI60_RS25535 PF00999 Sodium/hydrogen exchanger family JRI60_RS25540 PF00067 Cytochrome P450 JRI60_RS25545 PF00067 Cytochrome P450 JRI60_RS25555 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JRI60_RS25555 PF00326 Prolyl oligopeptidase family JRI60_RS25570 PF00657 GDSL-like Lipase/Acylhydrolase JRI60_RS25570 PF00404 Dockerin type I domain JRI60_RS25575 PF00069 Protein kinase domain JRI60_RS25575 PF03793 PASTA domain JRI60_RS25595 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JRI60_RS25595 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JRI60_RS25595 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JRI60_RS25600 PF07690 Major Facilitator Superfamily JRI60_RS25610 PF16859 Tetracyclin repressor-like, C-terminal domain JRI60_RS25610 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS25620 PF00593 TonB dependent receptor JRI60_RS25620 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS25660 PF00270 DEAD/DEAH box helicase JRI60_RS25660 PF00271 Helicase conserved C-terminal domain JRI60_RS25665 PF02705 K+ potassium transporter JRI60_RS25690 PF08448 PAS fold JRI60_RS25690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS25690 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_RS25690 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS25690 PF00672 HAMP domain JRI60_RS25695 PF06745 KaiC JRI60_RS25700 PF00072 Response regulator receiver domain JRI60_RS25700 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS25705 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JRI60_RS25710 PF00135 Carboxylesterase family JRI60_RS25715 PF00144 Beta-lactamase JRI60_RS25730 PF06628 Catalase-related immune-responsive JRI60_RS25730 PF00199 Catalase JRI60_RS25765 PF00576 HIUase/Transthyretin family JRI60_RS25775 PF03561 Allantoicase repeat JRI60_RS25780 PF01979 Amidohydrolase family JRI60_RS25785 PF13454 FAD-NAD(P)-binding JRI60_RS25790 PF00561 alpha/beta hydrolase fold JRI60_RS25800 PF07971 Glycosyl hydrolase family 92 JRI60_RS25800 PF17678 Glycosyl hydrolase family 92 N-terminal domain JRI60_RS25805 PF01464 Transglycosylase SLT domain JRI60_RS25805 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_RS25810 PF00005 ABC transporter JRI60_RS25820 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS25840 PF00999 Sodium/hydrogen exchanger family JRI60_RS25845 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_RS25850 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JRI60_RS25885 PF06165 Glycosyltransferase family 36 JRI60_RS25885 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JRI60_RS25885 PF10091 Putative glucoamylase JRI60_RS25890 PF00005 ABC transporter JRI60_RS25895 PF00128 Alpha amylase, catalytic domain JRI60_RS25900 PF12804 MobA-like NTP transferase domain JRI60_RS25905 PF02625 XdhC and CoxI family JRI60_RS25905 PF13478 XdhC Rossmann domain JRI60_RS25910 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_RS25910 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_RS25915 PF03450 CO dehydrogenase flavoprotein C-terminal domain JRI60_RS25915 PF00941 FAD binding domain in molybdopterin dehydrogenase JRI60_RS25920 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS25920 PF10518 TAT (twin-arginine translocation) pathway signal sequence JRI60_RS25920 PF01799 [2Fe-2S] binding domain JRI60_RS25930 PF00069 Protein kinase domain JRI60_RS25945 PF01494 FAD binding domain JRI60_RS25950 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_RS25955 PF00069 Protein kinase domain JRI60_RS25955 PF08308 PEGA domain JRI60_RS25965 PF00975 Thioesterase domain JRI60_RS25965 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS25965 PF08659 KR domain JRI60_RS25965 PF08990 Erythronolide synthase docking JRI60_RS25965 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS25965 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS25965 PF18369 Polyketide synthase dimerisation element domain JRI60_RS25965 PF00698 Acyl transferase domain JRI60_RS25965 PF00550 Phosphopantetheine attachment site JRI60_RS25970 PF13191 AAA ATPase domain JRI60_RS25970 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS25975 PF04030 D-arabinono-1,4-lactone oxidase JRI60_RS25975 PF01565 FAD binding domain JRI60_RS25985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS25985 PF00672 HAMP domain JRI60_RS25985 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS25990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_RS25990 PF02806 Alpha amylase, C-terminal all-beta domain JRI60_RS25990 PF00128 Alpha amylase, catalytic domain JRI60_RS25995 PF18085 Maltokinase N-terminal cap domain JRI60_RS26000 PF16657 Maltogenic Amylase, C-terminal domain JRI60_RS26000 PF00128 Alpha amylase, catalytic domain JRI60_RS26005 PF00128 Alpha amylase, catalytic domain JRI60_RS26005 PF11896 Domain of unknown function (DUF3416) JRI60_RS26050 PF01475 Ferric uptake regulator family JRI60_RS26055 PF00578 AhpC/TSA family JRI60_RS26065 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS26070 PF04445 Putative SAM-dependent methyltransferase JRI60_RS26090 PF00069 Protein kinase domain JRI60_RS26090 PF03793 PASTA domain JRI60_RS26095 PF00072 Response regulator receiver domain JRI60_RS26095 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS26115 PF01204 Trehalase JRI60_RS26125 PF13188 PAS domain JRI60_RS26125 PF00989 PAS fold JRI60_RS26125 PF13426 PAS domain JRI60_RS26125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS26125 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS26130 PF00067 Cytochrome P450 JRI60_RS26135 PF05193 Peptidase M16 inactive domain JRI60_RS26135 PF00675 Insulinase (Peptidase family M16) JRI60_RS26145 PF00849 RNA pseudouridylate synthase JRI60_RS26155 PF12823 Domain of unknown function (DUF3817) JRI60_RS26170 PF03793 PASTA domain JRI60_RS26170 PF00069 Protein kinase domain JRI60_RS26175 PF00072 Response regulator receiver domain JRI60_RS26185 PF02163 Peptidase family M50 JRI60_RS26185 PF17820 PDZ domain JRI60_RS26205 PF02405 Permease MlaE JRI60_RS26210 PF00005 ABC transporter JRI60_RS26250 PF02666 Phosphatidylserine decarboxylase JRI60_RS26255 PF13393 Histidyl-tRNA synthetase JRI60_RS26255 PF03129 Anticodon binding domain JRI60_RS26305 PF00069 Protein kinase domain JRI60_RS26315 PF00106 short chain dehydrogenase JRI60_RS26320 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS26320 PF00072 Response regulator receiver domain JRI60_RS26325 PF00072 Response regulator receiver domain JRI60_RS26325 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS26345 PF01029 NusB family JRI60_RS26345 PF01189 16S rRNA methyltransferase RsmB/F JRI60_RS26365 PF00348 Polyprenyl synthetase JRI60_RS26370 PF01791 DeoC/LacD family aldolase JRI60_RS26390 PF00155 Aminotransferase class I and II JRI60_RS26405 PF00155 Aminotransferase class I and II JRI60_RS26410 PF01642 Methylmalonyl-CoA mutase JRI60_RS26410 PF02310 B12 binding domain JRI60_RS26420 PF02310 B12 binding domain JRI60_RS26425 PF00682 HMGL-like JRI60_RS26430 PF01476 LysM domain JRI60_RS26430 PF08239 Bacterial SH3 domain JRI60_RS26430 PF00877 NlpC/P60 family JRI60_RS26440 PF00158 Sigma-54 interaction domain JRI60_RS26440 PF00072 Response regulator receiver domain JRI60_RS26440 PF02954 Bacterial regulatory protein, Fis family JRI60_RS26450 PF00069 Protein kinase domain JRI60_RS26460 PF02637 GatB domain JRI60_RS26460 PF00749 tRNA synthetases class I (E and Q), catalytic domain JRI60_RS26460 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JRI60_RS26465 PF07690 Major Facilitator Superfamily JRI60_RS26485 PF01553 Acyltransferase JRI60_RS26485 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS26485 PF00501 AMP-binding enzyme JRI60_RS26495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JRI60_RS26495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JRI60_RS26500 PF01232 Mannitol dehydrogenase Rossmann domain JRI60_RS26500 PF08125 Mannitol dehydrogenase C-terminal domain JRI60_RS26505 PF00005 ABC transporter JRI60_RS26505 PF08402 TOBE domain JRI60_RS26510 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS26515 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS26525 PF00067 Cytochrome P450 JRI60_RS26530 PF00069 Protein kinase domain JRI60_RS26540 PF00484 Carbonic anhydrase JRI60_RS26555 PF00072 Response regulator receiver domain JRI60_RS26555 PF09308 LuxQ, periplasmic JRI60_RS26555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS26555 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS26560 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) JRI60_RS26575 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS26585 PF00144 Beta-lactamase JRI60_RS26590 PF12706 Beta-lactamase superfamily domain JRI60_RS26595 PF00005 ABC transporter JRI60_RS26635 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS26635 PF01799 [2Fe-2S] binding domain JRI60_RS26640 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_RS26640 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_RS26650 PF07859 alpha/beta hydrolase fold JRI60_RS26655 PF00989 PAS fold JRI60_RS26655 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS26655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS26670 PF03466 LysR substrate binding domain JRI60_RS26670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS26680 PF01494 FAD binding domain JRI60_RS26685 PF05958 tRNA (Uracil-5-)-methyltransferase JRI60_RS26685 PF01938 TRAM domain JRI60_RS26715 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_RS26715 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_RS26720 PF00067 Cytochrome P450 JRI60_RS26725 PF00067 Cytochrome P450 JRI60_RS26730 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS26730 PF08359 YsiA-like protein, C-terminal region JRI60_RS26735 PF00561 alpha/beta hydrolase fold JRI60_RS26740 PF00561 alpha/beta hydrolase fold JRI60_RS26745 PF05922 Peptidase inhibitor I9 JRI60_RS26745 PF00082 Subtilase family JRI60_RS26750 PF05922 Peptidase inhibitor I9 JRI60_RS26750 PF00082 Subtilase family JRI60_RS26765 PF00704 Glycosyl hydrolases family 18 JRI60_RS26765 PF00041 Fibronectin type III domain JRI60_RS26795 PF01039 Carboxyl transferase domain JRI60_RS26800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS26800 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS26800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS26815 PF14622 Ribonuclease-III-like JRI60_RS26815 PF00035 Double-stranded RNA binding motif JRI60_RS26820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JRI60_RS26825 PF01926 50S ribosome-binding GTPase JRI60_RS26825 PF07650 KH domain JRI60_RS26830 PF01926 50S ribosome-binding GTPase JRI60_RS26830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JRI60_RS26845 PF00293 NUDIX domain JRI60_RS26855 PF08308 PEGA domain JRI60_RS26855 PF00069 Protein kinase domain JRI60_RS26870 PF00182 Chitinase class I JRI60_RS26955 PF10459 Peptidase S46 JRI60_RS26960 PF00117 Glutamine amidotransferase class-I JRI60_RS26960 PF00958 GMP synthase C terminal domain JRI60_RS26970 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_RS26970 PF00571 CBS domain JRI60_RS26975 PF00012 Hsp70 protein JRI60_RS26980 PF09335 SNARE associated Golgi protein JRI60_RS26985 PF00027 Cyclic nucleotide-binding domain JRI60_RS26985 PF13545 Crp-like helix-turn-helix domain JRI60_RS26990 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_RS26995 PF00919 Uncharacterized protein family UPF0004 JRI60_RS26995 PF01938 TRAM domain JRI60_RS26995 PF04055 Radical SAM superfamily JRI60_RS27025 PF01242 6-pyruvoyl tetrahydropterin synthase JRI60_RS27030 PF05958 tRNA (Uracil-5-)-methyltransferase JRI60_RS27030 PF01938 TRAM domain JRI60_RS27035 PF01144 Coenzyme A transferase JRI60_RS27040 PF01144 Coenzyme A transferase JRI60_RS27045 PF02803 Thiolase, C-terminal domain JRI60_RS27045 PF00108 Thiolase, N-terminal domain JRI60_RS27055 PF00575 S1 RNA binding domain JRI60_RS27060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS27060 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS27060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS27070 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS27070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS27070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS27075 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS27080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_RS27080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_RS27095 PF01883 Iron-sulfur cluster assembly protein JRI60_RS27095 PF10609 NUBPL iron-transfer P-loop NTPase JRI60_RS27120 PF03793 PASTA domain JRI60_RS27120 PF00069 Protein kinase domain JRI60_RS27135 PF00005 ABC transporter JRI60_RS27140 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_RS27140 PF00571 CBS domain JRI60_RS27180 PF00106 short chain dehydrogenase JRI60_RS27185 PF01432 Peptidase family M3 JRI60_RS27190 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS27190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_RS27190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_RS27215 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_RS27215 PF00633 Helix-hairpin-helix motif JRI60_RS27220 PF00248 Aldo/keto reductase family JRI60_RS27225 PF00958 GMP synthase C terminal domain JRI60_RS27225 PF00117 Glutamine amidotransferase class-I JRI60_RS27235 PF00392 Bacterial regulatory proteins, gntR family JRI60_RS27235 PF00155 Aminotransferase class I and II JRI60_RS27265 PF00067 Cytochrome P450 JRI60_RS27270 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS27270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS27275 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS27275 PF00072 Response regulator receiver domain JRI60_RS27310 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS27310 PF08659 KR domain JRI60_RS27310 PF00550 Phosphopantetheine attachment site JRI60_RS27310 PF14765 Polyketide synthase dehydratase JRI60_RS27310 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS27310 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS27310 PF00107 Zinc-binding dehydrogenase JRI60_RS27310 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS27310 PF00698 Acyl transferase domain JRI60_RS27325 PF03006 Haemolysin-III related JRI60_RS27370 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS27370 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS27370 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS27370 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_RS27370 PF17871 AAA lid domain JRI60_RS27375 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_RS27375 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS27375 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS27375 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS27375 PF17871 AAA lid domain JRI60_RS27380 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS27380 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS27380 PF17871 AAA lid domain JRI60_RS27380 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS27390 PF00067 Cytochrome P450 JRI60_RS27395 PF02743 Cache domain JRI60_RS27395 PF00672 HAMP domain JRI60_RS27395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS27405 PF00067 Cytochrome P450 JRI60_RS27420 PF00202 Aminotransferase class-III JRI60_RS27440 PF00355 Rieske [2Fe-2S] domain JRI60_RS27455 PF01384 Phosphate transporter family JRI60_RS27460 PF00550 Phosphopantetheine attachment site JRI60_RS27480 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS27480 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS27490 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS27490 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS27495 PF07977 FabA-like domain JRI60_RS27520 PF01575 MaoC like domain JRI60_RS27520 PF00171 Aldehyde dehydrogenase family JRI60_RS27525 PF01137 RNA 3'-terminal phosphate cyclase JRI60_RS27525 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain JRI60_RS27540 PF07885 Ion channel JRI60_RS27540 PF00027 Cyclic nucleotide-binding domain JRI60_RS27550 PF01479 S4 domain JRI60_RS27550 PF00849 RNA pseudouridylate synthase JRI60_RS27555 PF04079 Segregation and condensation complex subunit ScpB JRI60_RS27560 PF02616 Segregation and condensation protein ScpA JRI60_RS27565 PF00579 tRNA synthetases class I (W and Y) JRI60_RS27595 PF02899 Phage integrase, N-terminal SAM-like domain JRI60_RS27595 PF00589 Phage integrase family JRI60_RS27600 PF01300 Telomere recombination JRI60_RS27605 PF00999 Sodium/hydrogen exchanger family JRI60_RS27605 PF02254 TrkA-N domain JRI60_RS27630 PF01966 HD domain JRI60_RS27630 PF08335 GlnD PII-uridylyltransferase JRI60_RS27630 PF01909 Nucleotidyltransferase domain JRI60_RS27640 PF00355 Rieske [2Fe-2S] domain JRI60_RS27670 PF00069 Protein kinase domain JRI60_RS27680 PF03050 Transposase IS66 family JRI60_RS27680 PF13817 IS66 C-terminal element JRI60_RS27680 PF13007 Transposase C of IS166 homeodomain JRI60_RS27680 PF13005 zinc-finger binding domain of transposase IS66 JRI60_RS27735 PF13817 IS66 C-terminal element JRI60_RS27735 PF13007 Transposase C of IS166 homeodomain JRI60_RS27735 PF13005 zinc-finger binding domain of transposase IS66 JRI60_RS27735 PF03050 Transposase IS66 family JRI60_RS27755 PF13087 AAA domain JRI60_RS27755 PF13195 Protein of unknown function (DUF4011) JRI60_RS27755 PF13086 AAA domain JRI60_RS27755 PF13086 AAA domain JRI60_RS27755 PF13087 AAA domain JRI60_RS27755 PF13195 Protein of unknown function (DUF4011) JRI60_RS27760 PF01520 N-acetylmuramoyl-L-alanine amidase JRI60_RS27805 PF03466 LysR substrate binding domain JRI60_RS27805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS27825 PF05188 MutS domain II JRI60_RS27825 PF00488 MutS domain V JRI60_RS27825 PF05190 MutS family domain IV JRI60_RS27825 PF05192 MutS domain III JRI60_RS27825 PF01624 MutS domain I JRI60_RS27830 PF06965 Na+/H+ antiporter 1 JRI60_RS27835 PF03109 ABC1 family JRI60_RS27840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JRI60_RS27845 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS27850 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS27850 PF12911 N-terminal TM domain of oligopeptide transport permease C JRI60_RS27855 PF00005 ABC transporter JRI60_RS27855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JRI60_RS27860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JRI60_RS27860 PF00005 ABC transporter JRI60_RS27865 PF14310 Fibronectin type III-like domain JRI60_RS27865 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_RS27865 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_RS27870 PF00873 AcrB/AcrD/AcrF family JRI60_RS27875 PF13533 Biotin-lipoyl like JRI60_RS27890 PF09383 NIL domain JRI60_RS27890 PF00005 ABC transporter JRI60_RS27895 PF02405 Permease MlaE JRI60_RS27910 PF02405 Permease MlaE JRI60_RS27915 PF00005 ABC transporter JRI60_RS27920 PF02470 MlaD protein JRI60_RS27930 PF03422 Carbohydrate binding module (family 6) JRI60_RS27930 PF00404 Dockerin type I domain JRI60_RS27930 PF00331 Glycosyl hydrolase family 10 JRI60_RS27930 PF00756 Putative esterase JRI60_RS27980 PF00753 Metallo-beta-lactamase superfamily JRI60_RS27980 PF12706 Beta-lactamase superfamily domain JRI60_RS27985 PF00158 Sigma-54 interaction domain JRI60_RS27985 PF02954 Bacterial regulatory protein, Fis family JRI60_RS27985 PF01590 GAF domain JRI60_RS27990 PF00672 HAMP domain JRI60_RS27990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS27990 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS27990 PF13426 PAS domain JRI60_RS27995 PF01965 DJ-1/PfpI family JRI60_RS28000 PF01965 DJ-1/PfpI family JRI60_RS28010 PF00069 Protein kinase domain JRI60_RS28010 PF03793 PASTA domain JRI60_RS28015 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS28025 PF01142 tRNA pseudouridine synthase D (TruD) JRI60_RS28030 PF08281 Sigma-70, region 4 JRI60_RS28030 PF04542 Sigma-70 region 2 JRI60_RS28055 PF01266 FAD dependent oxidoreductase JRI60_RS28060 PF00106 short chain dehydrogenase JRI60_RS28080 PF00891 O-methyltransferase domain JRI60_RS28090 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS28090 PF00501 AMP-binding enzyme JRI60_RS28090 PF01553 Acyltransferase JRI60_RS28095 PF03372 Endonuclease/Exonuclease/phosphatase family JRI60_RS28100 PF00561 alpha/beta hydrolase fold JRI60_RS28105 PF00248 Aldo/keto reductase family JRI60_RS28115 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS28115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS28115 PF02743 Cache domain JRI60_RS28135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS28135 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS28135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS28140 PF12146 Serine aminopeptidase, S33 JRI60_RS28170 PF02811 PHP domain JRI60_RS28170 PF14579 Helix-hairpin-helix motif JRI60_RS28170 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JRI60_RS28170 PF07733 Bacterial DNA polymerase III alpha NTPase domain JRI60_RS28190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS28190 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS28190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS28195 PF08386 TAP-like protein JRI60_RS28195 PF00561 alpha/beta hydrolase fold JRI60_RS28210 PF01145 SPFH domain / Band 7 family JRI60_RS28220 PF12848 ABC transporter JRI60_RS28220 PF00005 ABC transporter JRI60_RS28330 PF01434 Peptidase family M41 JRI60_RS28330 PF17862 AAA+ lid domain JRI60_RS28330 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS28355 PF03466 LysR substrate binding domain JRI60_RS28355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS28360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS28360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS28360 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS28365 PF00106 short chain dehydrogenase JRI60_RS28365 PF00561 alpha/beta hydrolase fold JRI60_RS28385 PF00462 Glutaredoxin JRI60_RS28390 PF01370 NAD dependent epimerase/dehydratase family JRI60_RS28400 PF00535 Glycosyl transferase family 2 JRI60_RS28435 PF02424 ApbE family JRI60_RS28455 PF00154 recA bacterial DNA recombination protein JRI60_RS28465 PF05362 Lon protease (S16) C-terminal proteolytic domain JRI60_RS28465 PF02190 ATP-dependent protease La (LON) substrate-binding domain JRI60_RS28465 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS28475 PF00668 Condensation domain JRI60_RS28475 PF00550 Phosphopantetheine attachment site JRI60_RS28475 PF07993 Male sterility protein JRI60_RS28475 PF00501 AMP-binding enzyme JRI60_RS28475 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS28480 PF00501 AMP-binding enzyme JRI60_RS28480 PF00668 Condensation domain JRI60_RS28480 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS28480 PF00501 AMP-binding enzyme JRI60_RS28480 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS28480 PF00668 Condensation domain JRI60_RS28480 PF00550 Phosphopantetheine attachment site JRI60_RS28480 PF00501 AMP-binding enzyme JRI60_RS28480 PF00668 Condensation domain JRI60_RS28480 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS28480 PF00550 Phosphopantetheine attachment site JRI60_RS28480 PF00550 Phosphopantetheine attachment site JRI60_RS28485 PF00668 Condensation domain JRI60_RS28485 PF00550 Phosphopantetheine attachment site JRI60_RS28485 PF00668 Condensation domain JRI60_RS28485 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS28485 PF00501 AMP-binding enzyme JRI60_RS28485 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS28485 PF00501 AMP-binding enzyme JRI60_RS28485 PF00550 Phosphopantetheine attachment site JRI60_RS28490 PF00248 Aldo/keto reductase family JRI60_RS28515 PF00069 Protein kinase domain JRI60_RS28515 PF03793 PASTA domain JRI60_RS28525 PF00158 Sigma-54 interaction domain JRI60_RS28525 PF01590 GAF domain JRI60_RS28540 PF00067 Cytochrome P450 JRI60_RS28545 PF00557 Metallopeptidase family M24 JRI60_RS28550 PF00698 Acyl transferase domain JRI60_RS28550 PF03060 Nitronate monooxygenase JRI60_RS28555 PF00698 Acyl transferase domain JRI60_RS28560 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS28565 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS28570 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS28570 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS28575 PF00550 Phosphopantetheine attachment site JRI60_RS28580 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JRI60_RS28580 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JRI60_RS28585 PF08659 KR domain JRI60_RS28585 PF00501 AMP-binding enzyme JRI60_RS28585 PF00550 Phosphopantetheine attachment site JRI60_RS28585 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS28585 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS28585 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS28585 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS28585 PF14765 Polyketide synthase dehydratase JRI60_RS28585 PF00668 Condensation domain JRI60_RS28595 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS28595 PF00501 AMP-binding enzyme JRI60_RS28595 PF14765 Polyketide synthase dehydratase JRI60_RS28595 PF00550 Phosphopantetheine attachment site JRI60_RS28595 PF08659 KR domain JRI60_RS28595 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS28595 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS28595 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS28595 PF00668 Condensation domain JRI60_RS28600 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS28600 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS28600 PF08659 KR domain JRI60_RS28600 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS28600 PF14765 Polyketide synthase dehydratase JRI60_RS28600 PF00550 Phosphopantetheine attachment site JRI60_RS28610 PF01118 Semialdehyde dehydrogenase, NAD binding domain JRI60_RS28610 PF02774 Semialdehyde dehydrogenase, dimerisation domain JRI60_RS28615 PF01960 ArgJ family JRI60_RS28620 PF01316 Arginine repressor, DNA binding domain JRI60_RS28620 PF02863 Arginine repressor, C-terminal domain JRI60_RS28625 PF00206 Lyase JRI60_RS28625 PF14698 Argininosuccinate lyase C-terminal JRI60_RS28630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JRI60_RS28630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JRI60_RS28635 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JRI60_RS28640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_RS28640 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JRI60_RS28640 PF02142 MGS-like domain JRI60_RS28650 PF00155 Aminotransferase class I and II JRI60_RS28655 PF01467 Cytidylyltransferase-like JRI60_RS28670 PF00909 Ammonium Transporter Family JRI60_RS28690 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_RS28690 PF08264 Anticodon-binding domain of tRNA JRI60_RS28695 PF02015 Glycosyl hydrolase family 45 JRI60_RS28695 PF00553 Cellulose binding domain JRI60_RS28695 PF02013 Cellulose or protein binding domain JRI60_RS28705 PF04235 Protein of unknown function (DUF418) JRI60_RS28745 PF01522 Polysaccharide deacetylase JRI60_RS28780 PF01545 Cation efflux family JRI60_RS28785 PF00158 Sigma-54 interaction domain JRI60_RS28785 PF02954 Bacterial regulatory protein, Fis family JRI60_RS28785 PF00072 Response regulator receiver domain JRI60_RS28795 PF00679 Elongation factor G C-terminus JRI60_RS28795 PF03144 Elongation factor Tu domain 2 JRI60_RS28795 PF00009 Elongation factor Tu GTP binding domain JRI60_RS28795 PF14492 Elongation Factor G, domain II JRI60_RS28800 PF07690 Major Facilitator Superfamily JRI60_RS28825 PF02321 Outer membrane efflux protein JRI60_RS28825 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JRI60_RS28835 PF00873 AcrB/AcrD/AcrF family JRI60_RS28840 PF01593 Flavin containing amine oxidoreductase JRI60_RS28850 PF03109 ABC1 family JRI60_RS28865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS28865 PF18698 Histidine kinase sensor domain JRI60_RS28865 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS28865 PF00989 PAS fold JRI60_RS28865 PF00672 HAMP domain JRI60_RS28945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS28945 PF03466 LysR substrate binding domain JRI60_RS28950 PF00696 Amino acid kinase family JRI60_RS28950 PF01842 ACT domain JRI60_RS28950 PF13840 ACT domain JRI60_RS28955 PF01959 3-dehydroquinate synthase II JRI60_RS28960 PF01791 DeoC/LacD family aldolase JRI60_RS28975 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS28975 PF00501 AMP-binding enzyme JRI60_RS28990 PF02566 OsmC-like protein JRI60_RS29000 PF07995 Glucose / Sorbosone dehydrogenase JRI60_RS29005 PF00144 Beta-lactamase JRI60_RS29035 PF00144 Beta-lactamase JRI60_RS29050 PF00553 Cellulose binding domain JRI60_RS29050 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_RS29090 PF01047 MarR family JRI60_RS29105 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS29115 PF00297 Ribosomal protein L3 JRI60_RS29145 PF01551 Peptidase family M23 JRI60_RS29145 PF10145 Phage-related minor tail protein JRI60_RS29145 PF01464 Transglycosylase SLT domain JRI60_RS29155 PF13426 PAS domain JRI60_RS29155 PF00672 HAMP domain JRI60_RS29155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS29155 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS29160 PF17863 AAA lid domain JRI60_RS29160 PF07726 ATPase family associated with various cellular activities (AAA) JRI60_RS29175 PF00140 Sigma-70 factor, region 1.2 JRI60_RS29175 PF04545 Sigma-70, region 4 JRI60_RS29175 PF04542 Sigma-70 region 2 JRI60_RS29180 PF03169 OPT oligopeptide transporter protein JRI60_RS29195 PF01966 HD domain JRI60_RS29195 PF11871 Domain of unknown function (DUF3391) JRI60_RS29210 PF00893 Small Multidrug Resistance protein JRI60_RS29215 PF00849 RNA pseudouridylate synthase JRI60_RS29215 PF01479 S4 domain JRI60_RS29230 PF10609 NUBPL iron-transfer P-loop NTPase JRI60_RS29245 PF12390 Selenocysteine synthase N terminal JRI60_RS29245 PF03841 L-seryl-tRNA selenium transferase JRI60_RS29250 PF01464 Transglycosylase SLT domain JRI60_RS29255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS29255 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS29280 PF07152 YaeQ protein JRI60_RS29305 PF00795 Carbon-nitrogen hydrolase JRI60_RS29315 PF12848 ABC transporter JRI60_RS29315 PF00005 ABC transporter JRI60_RS29320 PF00069 Protein kinase domain JRI60_RS29330 PF02224 Cytidylate kinase JRI60_RS29335 PF00155 Aminotransferase class I and II JRI60_RS29340 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JRI60_RS29355 PF02374 Anion-transporting ATPase JRI60_RS29360 PF00072 Response regulator receiver domain JRI60_RS29360 PF02954 Bacterial regulatory protein, Fis family JRI60_RS29360 PF00158 Sigma-54 interaction domain JRI60_RS29390 PF00012 Hsp70 protein JRI60_RS29400 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS29400 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS29400 PF06689 ClpX C4-type zinc finger JRI60_RS29415 PF01416 tRNA pseudouridine synthase JRI60_RS29430 PF02540 NAD synthase JRI60_RS29435 PF14306 PUA-like domain JRI60_RS29435 PF01747 ATP-sulfurylase JRI60_RS29445 PF02597 ThiS family JRI60_RS29455 PF07730 Histidine kinase JRI60_RS29460 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS29460 PF00072 Response regulator receiver domain JRI60_RS29485 PF03576 Peptidase family S58 JRI60_RS29490 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS29520 PF00264 Common central domain of tyrosinase JRI60_RS29525 PF03793 PASTA domain JRI60_RS29525 PF00069 Protein kinase domain JRI60_RS29530 PF00072 Response regulator receiver domain JRI60_RS29530 PF02954 Bacterial regulatory protein, Fis family JRI60_RS29530 PF00158 Sigma-54 interaction domain JRI60_RS29600 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JRI60_RS29640 PF00691 OmpA family JRI60_RS29655 PF07478 D-ala D-ala ligase C-terminus JRI60_RS29655 PF01820 D-ala D-ala ligase N-terminus JRI60_RS29670 PF00490 Delta-aminolevulinic acid dehydratase JRI60_RS29680 PF00005 ABC transporter JRI60_RS29695 PF05175 Methyltransferase small domain JRI60_RS29715 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS29720 PF01339 CheB methylesterase JRI60_RS29725 PF01584 CheW-like domain JRI60_RS29725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS29725 PF01627 Hpt domain JRI60_RS29725 PF00072 Response regulator receiver domain JRI60_RS29730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS29740 PF01584 CheW-like domain JRI60_RS29755 PF06463 Molybdenum Cofactor Synthesis C JRI60_RS29755 PF04055 Radical SAM superfamily JRI60_RS29760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JRI60_RS29760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JRI60_RS29765 PF04542 Sigma-70 region 2 JRI60_RS29765 PF08281 Sigma-70, region 4 JRI60_RS29785 PF03309 Type III pantothenate kinase JRI60_RS29790 PF02237 Biotin protein ligase C terminal domain JRI60_RS29790 PF08279 HTH domain JRI60_RS29790 PF03099 Biotin/lipoate A/B protein ligase family JRI60_RS29795 PF03447 Homoserine dehydrogenase, NAD binding domain JRI60_RS29795 PF01842 ACT domain JRI60_RS29795 PF00742 Homoserine dehydrogenase JRI60_RS29850 PF00072 Response regulator receiver domain JRI60_RS29850 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_RS29850 PF00672 HAMP domain JRI60_RS29850 PF01627 Hpt domain JRI60_RS29850 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS29850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS29855 PF00485 Phosphoribulokinase / Uridine kinase family JRI60_RS29865 PF05114 Protein of unknown function (DUF692) JRI60_RS29885 PF07703 Alpha-2-macroglobulin bait region domain JRI60_RS29885 PF01835 MG2 domain JRI60_RS29885 PF00207 Alpha-2-macroglobulin family JRI60_RS29925 PF00912 Transglycosylase JRI60_RS29940 PF00437 Type II/IV secretion system protein JRI60_RS29950 PF01625 Peptide methionine sulfoxide reductase JRI60_RS29955 PF12704 MacB-like periplasmic core domain JRI60_RS29955 PF02687 FtsX-like permease family JRI60_RS29955 PF00005 ABC transporter JRI60_RS29960 PF02687 FtsX-like permease family JRI60_RS29960 PF00005 ABC transporter JRI60_RS29960 PF12704 MacB-like periplasmic core domain JRI60_RS29965 PF00005 ABC transporter JRI60_RS29985 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS29985 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS29985 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_RS29985 PF17871 AAA lid domain JRI60_RS29985 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS30010 PF02743 Cache domain JRI60_RS30010 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS30010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS30030 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS30030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS30030 PF08448 PAS fold JRI60_RS30030 PF13188 PAS domain JRI60_RS30030 PF00072 Response regulator receiver domain JRI60_RS30070 PF02872 5'-nucleotidase, C-terminal domain JRI60_RS30070 PF00149 Calcineurin-like phosphoesterase JRI60_RS30075 PF02146 Sir2 family JRI60_RS30080 PF08448 PAS fold JRI60_RS30080 PF08447 PAS fold JRI60_RS30080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS30085 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS30085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS30095 PF18354 CarS bacterial SH3 domain JRI60_RS30105 PF04542 Sigma-70 region 2 JRI60_RS30105 PF04545 Sigma-70, region 4 JRI60_RS30110 PF03466 LysR substrate binding domain JRI60_RS30110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS30125 PF03793 PASTA domain JRI60_RS30125 PF00069 Protein kinase domain JRI60_RS30130 PF00690 Cation transporter/ATPase, N-terminus JRI60_RS30130 PF00689 Cation transporting ATPase, C-terminus JRI60_RS30135 PF01467 Cytidylyltransferase-like JRI60_RS30145 PF07075 Protein of unknown function (DUF1343) JRI60_RS30150 PF00069 Protein kinase domain JRI60_RS30150 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS30160 PF01713 Smr domain JRI60_RS30160 PF00488 MutS domain V JRI60_RS30170 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_RS30170 PF00041 Fibronectin type III domain JRI60_RS30170 PF00553 Cellulose binding domain JRI60_RS30175 PF00759 Glycosyl hydrolase family 9 JRI60_RS30175 PF00942 Cellulose binding domain JRI60_RS30180 PF02011 Glycosyl hydrolase family 48 JRI60_RS30180 PF00041 Fibronectin type III domain JRI60_RS30180 PF00553 Cellulose binding domain JRI60_RS30185 PF17912 MalK OB fold domain JRI60_RS30185 PF00005 ABC transporter JRI60_RS30190 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS30195 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS30200 PF01547 Bacterial extracellular solute-binding protein JRI60_RS30205 PF00232 Glycosyl hydrolase family 1 JRI60_RS30210 PF00356 Bacterial regulatory proteins, lacI family JRI60_RS30215 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JRI60_RS30215 PF18416 N-acetylglucosamine binding protein domain 2 JRI60_RS30230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS30230 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS30240 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family JRI60_RS30265 PF00581 Rhodanese-like domain JRI60_RS30270 PF00849 RNA pseudouridylate synthase JRI60_RS30275 PF08787 Alginate lyase JRI60_RS30280 PF17876 Cold shock domain JRI60_RS30280 PF08461 Ribonuclease R winged-helix domain JRI60_RS30280 PF08206 Ribonuclease B OB domain JRI60_RS30280 PF00773 RNB domain JRI60_RS30280 PF00575 S1 RNA binding domain JRI60_RS30290 PF03454 MoeA C-terminal region (domain IV) JRI60_RS30290 PF03453 MoeA N-terminal region (domain I and II) JRI60_RS30290 PF00994 Probable molybdopterin binding domain JRI60_RS30295 PF00925 GTP cyclohydrolase II JRI60_RS30295 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JRI60_RS30305 PF00293 NUDIX domain JRI60_RS30305 PF03099 Biotin/lipoate A/B protein ligase family JRI60_RS30310 PF00005 ABC transporter JRI60_RS30315 PF00364 Biotin-requiring enzyme JRI60_RS30315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JRI60_RS30315 PF02817 e3 binding domain JRI60_RS30320 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JRI60_RS30320 PF04055 Radical SAM superfamily JRI60_RS30330 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS30330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JRI60_RS30350 PF08206 Ribonuclease B OB domain JRI60_RS30350 PF00773 RNB domain JRI60_RS30350 PF00575 S1 RNA binding domain JRI60_RS30350 PF17876 Cold shock domain JRI60_RS30360 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JRI60_RS30360 PF01502 Phosphoribosyl-AMP cyclohydrolase JRI60_RS30365 PF00459 Inositol monophosphatase family JRI60_RS30370 PF00977 Histidine biosynthesis protein JRI60_RS30375 PF00475 Imidazoleglycerol-phosphate dehydratase JRI60_RS30380 PF00977 Histidine biosynthesis protein JRI60_RS30385 PF00117 Glutamine amidotransferase class-I JRI60_RS30390 PF00155 Aminotransferase class I and II JRI60_RS30395 PF00815 Histidinol dehydrogenase JRI60_RS30400 PF08029 HisG, C-terminal domain JRI60_RS30400 PF01634 ATP phosphoribosyltransferase JRI60_RS30405 PF00072 Response regulator receiver domain JRI60_RS30410 PF06463 Molybdenum Cofactor Synthesis C JRI60_RS30410 PF04055 Radical SAM superfamily JRI60_RS30420 PF01964 Radical SAM ThiC family JRI60_RS30420 PF13667 ThiC-associated domain JRI60_RS30425 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_RS30425 PF00571 CBS domain JRI60_RS30440 PF00158 Sigma-54 interaction domain JRI60_RS30440 PF00072 Response regulator receiver domain JRI60_RS30440 PF02954 Bacterial regulatory protein, Fis family JRI60_RS30445 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS30445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS30450 PF00072 Response regulator receiver domain JRI60_RS30455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS30505 PF02875 Mur ligase family, glutamate ligase domain JRI60_RS30505 PF08245 Mur ligase middle domain JRI60_RS30505 PF08443 RimK-like ATP-grasp domain JRI60_RS30515 PF03551 Transcriptional regulator PadR-like family JRI60_RS30535 PF00743 Flavin-binding monooxygenase-like JRI60_RS30545 PF07859 alpha/beta hydrolase fold JRI60_RS30550 PF00255 Glutathione peroxidase JRI60_RS30595 PF13185 GAF domain JRI60_RS30595 PF13492 GAF domain JRI60_RS30595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS30595 PF07730 Histidine kinase JRI60_RS30635 PF00069 Protein kinase domain JRI60_RS30640 PF02954 Bacterial regulatory protein, Fis family JRI60_RS30640 PF00072 Response regulator receiver domain JRI60_RS30640 PF00158 Sigma-54 interaction domain JRI60_RS30645 PF00069 Protein kinase domain JRI60_RS30645 PF03793 PASTA domain JRI60_RS30680 PF00743 Flavin-binding monooxygenase-like JRI60_RS30685 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS30685 PF08362 YcdC-like protein, C-terminal region JRI60_RS30690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS30690 PF03466 LysR substrate binding domain JRI60_RS30710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS30710 PF03466 LysR substrate binding domain JRI60_RS30720 PF00857 Isochorismatase family JRI60_RS30725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS30725 PF03466 LysR substrate binding domain JRI60_RS30735 PF00067 Cytochrome P450 JRI60_RS30740 PF01047 MarR family JRI60_RS30755 PF03466 LysR substrate binding domain JRI60_RS30760 PF00248 Aldo/keto reductase family JRI60_RS30765 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS30765 PF00107 Zinc-binding dehydrogenase JRI60_RS30795 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS30795 PF00107 Zinc-binding dehydrogenase JRI60_RS30800 PF03466 LysR substrate binding domain JRI60_RS30800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS30805 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JRI60_RS30820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS30820 PF03466 LysR substrate binding domain JRI60_RS30845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JRI60_RS30845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JRI60_RS30860 PF13180 PDZ domain JRI60_RS30865 PF01025 GrpE JRI60_RS30875 PF01434 Peptidase family M41 JRI60_RS30875 PF06480 FtsH Extracellular JRI60_RS30875 PF17862 AAA+ lid domain JRI60_RS30875 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS30885 PF00293 NUDIX domain JRI60_RS30890 PF07238 PilZ domain JRI60_RS30890 PF00069 Protein kinase domain JRI60_RS30900 PF03918 Cytochrome C biogenesis protein JRI60_RS30910 PF00069 Protein kinase domain JRI60_RS30910 PF08308 PEGA domain JRI60_RS30920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JRI60_RS30935 PF01933 Uncharacterised protein family UPF0052 JRI60_RS30940 PF02397 Bacterial sugar transferase JRI60_RS30945 PF13614 AAA domain JRI60_RS30970 PF00128 Alpha amylase, catalytic domain JRI60_RS30970 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_RS30970 PF11941 Domain of unknown function (DUF3459) JRI60_RS30990 PF00106 short chain dehydrogenase JRI60_RS30995 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_RS30995 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_RS31000 PF00067 Cytochrome P450 JRI60_RS31005 PF00942 Cellulose binding domain JRI60_RS31010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS31010 PF13426 PAS domain JRI60_RS31010 PF00072 Response regulator receiver domain JRI60_RS31025 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS31025 PF16193 AAA C-terminal domain JRI60_RS31025 PF12002 MgsA AAA+ ATPase C terminal JRI60_RS31030 PF00881 Nitroreductase family JRI60_RS31035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS31035 PF03466 LysR substrate binding domain JRI60_RS31045 PF03055 Retinal pigment epithelial membrane protein JRI60_RS31085 PF02146 Sir2 family JRI60_RS31090 PF00579 tRNA synthetases class I (W and Y) JRI60_RS31120 PF01554 MatE JRI60_RS31135 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JRI60_RS31135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_RS31145 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JRI60_RS31150 PF01261 Xylose isomerase-like TIM barrel JRI60_RS31155 PF00534 Glycosyl transferases group 1 JRI60_RS31155 PF13439 Glycosyltransferase Family 4 JRI60_RS31160 PF02585 GlcNAc-PI de-N-acetylase JRI60_RS31165 PF01494 FAD binding domain JRI60_RS31175 PF01425 Amidase JRI60_RS31205 PF08281 Sigma-70, region 4 JRI60_RS31205 PF04542 Sigma-70 region 2 JRI60_RS31235 PF01370 NAD dependent epimerase/dehydratase family JRI60_RS31240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS31240 PF00989 PAS fold JRI60_RS31240 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS31245 PF00270 DEAD/DEAH box helicase JRI60_RS31245 PF00271 Helicase conserved C-terminal domain JRI60_RS31245 PF03880 DbpA RNA binding domain JRI60_RS31255 PF13462 Thioredoxin JRI60_RS31255 PF06965 Na+/H+ antiporter 1 JRI60_RS31260 PF02954 Bacterial regulatory protein, Fis family JRI60_RS31260 PF00072 Response regulator receiver domain JRI60_RS31260 PF00158 Sigma-54 interaction domain JRI60_RS31265 PF07694 5TMR of 5TMR-LYT JRI60_RS31265 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS31285 PF00905 Penicillin binding protein transpeptidase domain JRI60_RS31295 PF00005 ABC transporter JRI60_RS31300 PF13462 Thioredoxin JRI60_RS31300 PF06965 Na+/H+ antiporter 1 JRI60_RS31305 PF01042 Endoribonuclease L-PSP JRI60_RS31320 PF02824 TGS domain JRI60_RS31320 PF04607 Region found in RelA / SpoT proteins JRI60_RS31320 PF13291 ACT domain JRI60_RS31330 PF00069 Protein kinase domain JRI60_RS31340 PF01258 Prokaryotic dksA/traR C4-type zinc finger JRI60_RS31355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS31355 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS31355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS31360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_RS31360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_RS31360 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS31365 PF00108 Thiolase, N-terminal domain JRI60_RS31365 PF02803 Thiolase, C-terminal domain JRI60_RS31390 PF00012 Hsp70 protein JRI60_RS31405 PF04359 Protein of unknown function (DUF493) JRI60_RS31410 PF13638 PIN domain JRI60_RS31410 PF02562 PhoH-like protein JRI60_RS31415 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_RS31415 PF03449 Transcription elongation factor, N-terminal JRI60_RS31430 PF03466 LysR substrate binding domain JRI60_RS31430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS31435 PF00698 Acyl transferase domain JRI60_RS31435 PF14765 Polyketide synthase dehydratase JRI60_RS31435 PF00550 Phosphopantetheine attachment site JRI60_RS31435 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS31435 PF00107 Zinc-binding dehydrogenase JRI60_RS31435 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS31435 PF08659 KR domain JRI60_RS31435 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS31435 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS31460 PF01209 ubiE/COQ5 methyltransferase family JRI60_RS31465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS31465 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS31465 PF08448 PAS fold JRI60_RS31465 PF00672 HAMP domain JRI60_RS31465 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_RS31475 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JRI60_RS31480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS31480 PF03466 LysR substrate binding domain JRI60_RS31485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS31485 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS31485 PF00072 Response regulator receiver domain JRI60_RS31485 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_RS31485 PF01627 Hpt domain JRI60_RS31490 PF13407 Periplasmic binding protein domain JRI60_RS31505 PF14521 Lysine-specific metallo-endopeptidase JRI60_RS31510 PF01575 MaoC like domain JRI60_RS31515 PF00457 Glycosyl hydrolases family 11 JRI60_RS31515 PF01522 Polysaccharide deacetylase JRI60_RS31520 PF17128 Domain of unknown function (DUF5107) JRI60_RS31520 PF13181 Tetratricopeptide repeat JRI60_RS31525 PF00155 Aminotransferase class I and II JRI60_RS31530 PF00722 Glycosyl hydrolases family 16 JRI60_RS31545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS31545 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS31545 PF00989 PAS fold JRI60_RS31550 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JRI60_RS31550 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JRI60_RS31555 PF00667 FAD binding domain JRI60_RS31555 PF00258 Flavodoxin JRI60_RS31555 PF00175 Oxidoreductase NAD-binding domain JRI60_RS31560 PF00009 Elongation factor Tu GTP binding domain JRI60_RS31565 PF01507 Phosphoadenosine phosphosulfate reductase family JRI60_RS31570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_RS31570 PF10414 Sirohaem synthase dimerisation region JRI60_RS31570 PF14824 Sirohaem biosynthesis protein central JRI60_RS31575 PF10414 Sirohaem synthase dimerisation region JRI60_RS31575 PF14824 Sirohaem biosynthesis protein central JRI60_RS31575 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JRI60_RS31580 PF01507 Phosphoadenosine phosphosulfate reductase family JRI60_RS31590 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS31590 PF03476 MOSC N-terminal beta barrel domain JRI60_RS31590 PF03473 MOSC domain JRI60_RS31595 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS31595 PF13191 AAA ATPase domain JRI60_RS31600 PF03631 Virulence factor BrkB JRI60_RS31615 PF07885 Ion channel JRI60_RS31615 PF00027 Cyclic nucleotide-binding domain JRI60_RS31620 PF01321 Creatinase/Prolidase N-terminal domain JRI60_RS31620 PF00557 Metallopeptidase family M24 JRI60_RS31625 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS31625 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_RS31625 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS31625 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS31625 PF03413 Peptidase propeptide and YPEB domain JRI60_RS31640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS31640 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS31645 PF00072 Response regulator receiver domain JRI60_RS31645 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS31680 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS31685 PF03459 TOBE domain JRI60_RS31685 PF00005 ABC transporter JRI60_RS31695 PF13533 Biotin-lipoyl like JRI60_RS31705 PF03412 Peptidase C39 family JRI60_RS31705 PF00005 ABC transporter JRI60_RS31705 PF00664 ABC transporter transmembrane region JRI60_RS31720 PF05147 Lanthionine synthetase C-like protein JRI60_RS31720 PF13575 Domain of unknown function (DUF4135) JRI60_RS31730 PF00072 Response regulator receiver domain JRI60_RS31730 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS31735 PF00011 Hsp20/alpha crystallin family JRI60_RS31760 PF00795 Carbon-nitrogen hydrolase JRI60_RS31800 PF00005 ABC transporter JRI60_RS31800 PF13732 Domain of unknown function (DUF4162) JRI60_RS31820 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JRI60_RS31840 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_RS31840 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_RS31845 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS31845 PF01799 [2Fe-2S] binding domain JRI60_RS31855 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS31855 PF00668 Condensation domain JRI60_RS31855 PF00501 AMP-binding enzyme JRI60_RS31855 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS31855 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS31855 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS31855 PF14765 Polyketide synthase dehydratase JRI60_RS31855 PF08659 KR domain JRI60_RS31855 PF00550 Phosphopantetheine attachment site JRI60_RS31860 PF00989 PAS fold JRI60_RS31860 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS31860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS31880 PF00226 DnaJ domain JRI60_RS31880 PF01556 DnaJ C terminal domain JRI60_RS31880 PF00684 DnaJ central domain JRI60_RS31885 PF03807 NADP oxidoreductase coenzyme F420-dependent JRI60_RS31885 PF14748 Pyrroline-5-carboxylate reductase dimerisation JRI60_RS31895 PF02594 Uncharacterised ACR, YggU family COG1872 JRI60_RS31920 PF01367 5'-3' exonuclease, C-terminal SAM fold JRI60_RS31920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JRI60_RS31920 PF00476 DNA polymerase family A JRI60_RS31920 PF01612 3'-5' exonuclease JRI60_RS31930 PF00437 Type II/IV secretion system protein JRI60_RS31935 PF03958 Bacterial type II/III secretion system short domain JRI60_RS31935 PF00263 Bacterial type II and III secretion system protein JRI60_RS31945 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_RS31960 PF05746 DALR anticodon binding domain JRI60_RS31960 PF02092 Glycyl-tRNA synthetase beta subunit JRI60_RS31965 PF02091 Glycyl-tRNA synthetase alpha subunit JRI60_RS31970 PF00069 Protein kinase domain JRI60_RS31970 PF08308 PEGA domain JRI60_RS31975 PF00294 pfkB family carbohydrate kinase JRI60_RS31980 PF02565 Recombination protein O C terminal JRI60_RS31980 PF11967 Recombination protein O N terminal JRI60_RS32015 PF00623 RNA polymerase Rpb1, domain 2 JRI60_RS32015 PF04983 RNA polymerase Rpb1, domain 3 JRI60_RS32015 PF04997 RNA polymerase Rpb1, domain 1 JRI60_RS32015 PF05000 RNA polymerase Rpb1, domain 4 JRI60_RS32015 PF04998 RNA polymerase Rpb1, domain 5 JRI60_RS32020 PF04560 RNA polymerase Rpb2, domain 7 JRI60_RS32020 PF00562 RNA polymerase Rpb2, domain 6 JRI60_RS32020 PF10385 RNA polymerase beta subunit external 1 domain JRI60_RS32020 PF04565 RNA polymerase Rpb2, domain 3 JRI60_RS32020 PF04563 RNA polymerase beta subunit JRI60_RS32020 PF04561 RNA polymerase Rpb2, domain 2 JRI60_RS32025 PF16320 Ribosomal protein L7/L12 dimerisation domain JRI60_RS32025 PF00542 Ribosomal protein L7/L12 C-terminal domain JRI60_RS32030 PF00466 Ribosomal protein L10 JRI60_RS32035 PF00687 Ribosomal protein L1p/L10e family JRI60_RS32040 PF03946 Ribosomal protein L11, N-terminal domain JRI60_RS32040 PF00298 Ribosomal protein L11, RNA binding domain JRI60_RS32045 PF02357 Transcription termination factor nusG JRI60_RS32045 PF00467 KOW motif JRI60_RS32060 PF00471 Ribosomal protein L33 JRI60_RS32065 PF03143 Elongation factor Tu C-terminal domain JRI60_RS32065 PF00009 Elongation factor Tu GTP binding domain JRI60_RS32065 PF03144 Elongation factor Tu domain 2 JRI60_RS32090 PF08032 RNA 2'-O ribose methyltransferase substrate binding JRI60_RS32090 PF00588 SpoU rRNA Methylase family JRI60_RS32100 PF18030 RimK PreATP-grasp domain JRI60_RS32100 PF08443 RimK-like ATP-grasp domain JRI60_RS32125 PF04408 Helicase associated domain (HA2) JRI60_RS32125 PF00271 Helicase conserved C-terminal domain JRI60_RS32125 PF08482 ATP-dependent helicase C-terminal JRI60_RS32125 PF00270 DEAD/DEAH box helicase JRI60_RS32150 PF11953 Domain of unknown function (DUF3470) JRI60_RS32150 PF00037 4Fe-4S binding domain JRI60_RS32155 PF02774 Semialdehyde dehydrogenase, dimerisation domain JRI60_RS32155 PF01118 Semialdehyde dehydrogenase, NAD binding domain JRI60_RS32165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS32165 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS32165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS32175 PF04389 Peptidase family M28 JRI60_RS32175 PF02225 PA domain JRI60_RS32185 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JRI60_RS32185 PF02769 AIR synthase related protein, C-terminal domain JRI60_RS32185 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JRI60_RS32195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JRI60_RS32195 PF00384 Molybdopterin oxidoreductase JRI60_RS32195 PF01568 Molydopterin dinucleotide binding domain JRI60_RS32200 PF17171 Glutathione S-transferase, C-terminal domain JRI60_RS32200 PF17172 Glutathione S-transferase N-terminal domain JRI60_RS32210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS32215 PF04209 homogentisate 1,2-dioxygenase JRI60_RS32280 PF04717 Type VI secretion system, phage-baseplate injector JRI60_RS32280 PF06715 Gp5 C-terminal repeat (3 copies) JRI60_RS32340 PF01695 IstB-like ATP binding protein JRI60_RS32345 PF00665 Integrase core domain JRI60_RS32360 PF03706 Lysylphosphatidylglycerol synthase TM region JRI60_RS32360 PF09924 Uncharacterised conserved protein (DUF2156) JRI60_RS32370 PF13180 PDZ domain JRI60_RS32380 PF04122 Putative cell wall binding repeat 2 JRI60_RS32380 PF08486 Stage II sporulation protein JRI60_RS32390 PF01545 Cation efflux family JRI60_RS32390 PF16916 Dimerisation domain of Zinc Transporter JRI60_RS32405 PF13188 PAS domain JRI60_RS32405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS32405 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS32405 PF00072 Response regulator receiver domain JRI60_RS32405 PF08448 PAS fold JRI60_RS32410 PF01594 AI-2E family transporter JRI60_RS32425 PF02347 Glycine cleavage system P-protein JRI60_RS32430 PF01597 Glycine cleavage H-protein JRI60_RS32435 PF01571 Aminomethyltransferase folate-binding domain JRI60_RS32435 PF08669 Glycine cleavage T-protein C-terminal barrel domain JRI60_RS32440 PF02219 Methylenetetrahydrofolate reductase JRI60_RS32450 PF00561 alpha/beta hydrolase fold JRI60_RS32460 PF00593 TonB dependent receptor JRI60_RS32460 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS32470 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_RS32470 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_RS32470 PF14310 Fibronectin type III-like domain JRI60_RS32480 PF00069 Protein kinase domain JRI60_RS32480 PF03793 PASTA domain JRI60_RS32495 PF00942 Cellulose binding domain JRI60_RS32495 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_RS32495 PF12891 Glycoside hydrolase family 44 JRI60_RS32500 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS32505 PF00005 ABC transporter JRI60_RS32510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JRI60_RS32520 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JRI60_RS32520 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JRI60_RS32525 PF00226 DnaJ domain JRI60_RS32525 PF05099 Tellurite resistance protein TerB JRI60_RS32530 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_RS32535 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_RS32540 PF13840 ACT domain JRI60_RS32540 PF00742 Homoserine dehydrogenase JRI60_RS32540 PF03447 Homoserine dehydrogenase, NAD binding domain JRI60_RS32540 PF00696 Amino acid kinase family JRI60_RS32540 PF01842 ACT domain JRI60_RS32555 PF01713 Smr domain JRI60_RS32560 PF00962 Adenosine/AMP deaminase JRI60_RS32565 PF01180 Dihydroorotate dehydrogenase JRI60_RS32575 PF00534 Glycosyl transferases group 1 JRI60_RS32575 PF13439 Glycosyltransferase Family 4 JRI60_RS32590 PF01926 50S ribosome-binding GTPase JRI60_RS32605 PF01121 Dephospho-CoA kinase JRI60_RS32625 PF00202 Aminotransferase class-III JRI60_RS32630 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS32630 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS32635 PF00227 Proteasome subunit JRI60_RS32685 PF02899 Phage integrase, N-terminal SAM-like domain JRI60_RS32685 PF00589 Phage integrase family JRI60_RS32695 PF01134 Glucose inhibited division protein A JRI60_RS32720 PF01131 DNA topoisomerase JRI60_RS32720 PF01751 Toprim domain JRI60_RS32720 PF01396 Topoisomerase DNA binding C4 zinc finger JRI60_RS32725 PF02481 DNA recombination-mediator protein A JRI60_RS32740 PF02578 Multi-copper polyphenol oxidoreductase laccase JRI60_RS32745 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS32755 PF17820 PDZ domain JRI60_RS32755 PF13180 PDZ domain JRI60_RS32765 PF09210 Domain of unknown function (DUF1957) JRI60_RS32765 PF03065 Glycosyl hydrolase family 57 JRI60_RS32780 PF00072 Response regulator receiver domain JRI60_RS32790 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS32790 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS32790 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS32790 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_RS32790 PF17871 AAA lid domain JRI60_RS32795 PF08335 GlnD PII-uridylyltransferase JRI60_RS32795 PF03710 Glutamate-ammonia ligase adenylyltransferase JRI60_RS32805 PF01063 Amino-transferase class IV JRI60_RS32810 PF16193 AAA C-terminal domain JRI60_RS32810 PF12002 MgsA AAA+ ATPase C terminal JRI60_RS32810 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS32825 PF00266 Aminotransferase class-V JRI60_RS32835 PF00069 Protein kinase domain JRI60_RS32855 PF13277 YmdB-like protein JRI60_RS32860 PF00579 tRNA synthetases class I (W and Y) JRI60_RS32860 PF01479 S4 domain JRI60_RS32865 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS32865 PF00672 HAMP domain JRI60_RS32865 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_RS32865 PF08448 PAS fold JRI60_RS32865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS32870 PF01325 Iron dependent repressor, N-terminal DNA binding domain JRI60_RS32870 PF00480 ROK family JRI60_RS32875 PF00005 ABC transporter JRI60_RS32880 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS32885 PF13407 Periplasmic binding protein domain JRI60_RS32895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_RS32895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JRI60_RS32915 PF00149 Calcineurin-like phosphoesterase JRI60_RS32920 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JRI60_RS32920 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JRI60_RS32925 PF00207 Alpha-2-macroglobulin family JRI60_RS32925 PF07703 Alpha-2-macroglobulin bait region domain JRI60_RS32925 PF01835 MG2 domain JRI60_RS32930 PF02586 SOS response associated peptidase (SRAP) JRI60_RS32940 PF01728 FtsJ-like methyltransferase JRI60_RS32955 PF00069 Protein kinase domain JRI60_RS32955 PF03793 PASTA domain JRI60_RS32960 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS32960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS32960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS32985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS32985 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS32995 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS32995 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS32995 PF00698 Acyl transferase domain JRI60_RS32995 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS32995 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS32995 PF14765 Polyketide synthase dehydratase JRI60_RS32995 PF00550 Phosphopantetheine attachment site JRI60_RS32995 PF08659 KR domain JRI60_RS33000 PF00975 Thioesterase domain JRI60_RS33000 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS33000 PF00550 Phosphopantetheine attachment site JRI60_RS33000 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS33000 PF08659 KR domain JRI60_RS33000 PF08990 Erythronolide synthase docking JRI60_RS33000 PF00698 Acyl transferase domain JRI60_RS33000 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS33005 PF14765 Polyketide synthase dehydratase JRI60_RS33005 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS33005 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS33005 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS33005 PF00550 Phosphopantetheine attachment site JRI60_RS33005 PF08659 KR domain JRI60_RS33005 PF00698 Acyl transferase domain JRI60_RS33005 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS33010 PF02515 CoA-transferase family III JRI60_RS33020 PF00072 Response regulator receiver domain JRI60_RS33020 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS33030 PF02416 mttA/Hcf106 family JRI60_RS33035 PF00501 AMP-binding enzyme JRI60_RS33045 PF04539 Sigma-70 region 3 JRI60_RS33045 PF00140 Sigma-70 factor, region 1.2 JRI60_RS33045 PF04545 Sigma-70, region 4 JRI60_RS33045 PF04542 Sigma-70 region 2 JRI60_RS33050 PF01565 FAD binding domain JRI60_RS33050 PF02913 FAD linked oxidases, C-terminal domain JRI60_RS33055 PF01227 GTP cyclohydrolase I JRI60_RS33085 PF00005 ABC transporter JRI60_RS33090 PF00950 ABC 3 transport family JRI60_RS33095 PF06745 KaiC JRI60_RS33100 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS33100 PF00072 Response regulator receiver domain JRI60_RS33105 PF00106 short chain dehydrogenase JRI60_RS33110 PF00857 Isochorismatase family JRI60_RS33145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JRI60_RS33145 PF00205 Thiamine pyrophosphate enzyme, central domain JRI60_RS33145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JRI60_RS33155 PF01027 Inhibitor of apoptosis-promoting Bax1 JRI60_RS33170 PF08471 Class II vitamin B12-dependent ribonucleotide reductase JRI60_RS33170 PF02867 Ribonucleotide reductase, barrel domain JRI60_RS33190 PF02397 Bacterial sugar transferase JRI60_RS33195 PF13439 Glycosyltransferase Family 4 JRI60_RS33195 PF00534 Glycosyl transferases group 1 JRI60_RS33200 PF00534 Glycosyl transferases group 1 JRI60_RS33200 PF13439 Glycosyltransferase Family 4 JRI60_RS33220 PF08459 UvrC Helix-hairpin-helix N-terminal JRI60_RS33220 PF02151 UvrB/uvrC motif JRI60_RS33220 PF01541 GIY-YIG catalytic domain JRI60_RS33220 PF12826 Helix-hairpin-helix motif JRI60_RS33230 PF00069 Protein kinase domain JRI60_RS33230 PF03793 PASTA domain JRI60_RS33235 PF00072 Response regulator receiver domain JRI60_RS33235 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS33255 PF03739 Lipopolysaccharide export system permease LptF/LptG JRI60_RS33260 PF02844 Phosphoribosylglycinamide synthetase, N domain JRI60_RS33260 PF02843 Phosphoribosylglycinamide synthetase, C domain JRI60_RS33260 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JRI60_RS33270 PF02142 MGS-like domain JRI60_RS33270 PF01808 AICARFT/IMPCHase bienzyme JRI60_RS33275 PF04545 Sigma-70, region 4 JRI60_RS33275 PF04539 Sigma-70 region 3 JRI60_RS33275 PF04542 Sigma-70 region 2 JRI60_RS33275 PF00140 Sigma-70 factor, region 1.2 JRI60_RS33275 PF03979 Sigma-70 factor, region 1.1 JRI60_RS33285 PF00069 Protein kinase domain JRI60_RS33285 PF08308 PEGA domain JRI60_RS33290 PF00069 Protein kinase domain JRI60_RS33320 PF01066 CDP-alcohol phosphatidyltransferase JRI60_RS33325 PF12821 Threonine/Serine exporter, ThrE JRI60_RS33335 PF08543 Phosphomethylpyrimidine kinase JRI60_RS33340 PF01554 MatE JRI60_RS33345 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS33345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS33360 PF00069 Protein kinase domain JRI60_RS33365 PF00072 Response regulator receiver domain JRI60_RS33365 PF13188 PAS domain JRI60_RS33365 PF08448 PAS fold JRI60_RS33365 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS33365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS33370 PF12034 Domain of unknown function (DUF3520) JRI60_RS33370 PF00092 von Willebrand factor type A domain JRI60_RS33370 PF12450 von Willebrand factor JRI60_RS33375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS33375 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS33380 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS33380 PF00072 Response regulator receiver domain JRI60_RS33385 PF17827 PrmC N-terminal domain JRI60_RS33385 PF05175 Methyltransferase small domain JRI60_RS33390 PF09587 Bacterial capsule synthesis protein PGA_cap JRI60_RS33395 PF14743 DNA ligase OB-like domain JRI60_RS33395 PF01068 ATP dependent DNA ligase domain JRI60_RS33405 PF05922 Peptidase inhibitor I9 JRI60_RS33405 PF00082 Subtilase family JRI60_RS33425 PF10509 Galactokinase galactose-binding signature JRI60_RS33425 PF08544 GHMP kinases C terminal JRI60_RS33425 PF00288 GHMP kinases N terminal domain JRI60_RS33430 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JRI60_RS33430 PF04616 Glycosyl hydrolases family 43 JRI60_RS33435 PF16369 C-terminal lipocalin-like domain JRI60_RS33435 PF04616 Glycosyl hydrolases family 43 JRI60_RS33440 PF13407 Periplasmic binding protein domain JRI60_RS33445 PF00005 ABC transporter JRI60_RS33450 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS33455 PF02653 Branched-chain amino acid transport system / permease component JRI60_RS33465 PF01555 DNA methylase JRI60_RS33480 PF02190 ATP-dependent protease La (LON) substrate-binding domain JRI60_RS33480 PF05362 Lon protease (S16) C-terminal proteolytic domain JRI60_RS33480 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS33505 PF07714 Protein tyrosine kinase JRI60_RS33530 PF03050 Transposase IS66 family JRI60_RS33530 PF13007 Transposase C of IS166 homeodomain JRI60_RS33530 PF13005 zinc-finger binding domain of transposase IS66 JRI60_RS33530 PF13817 IS66 C-terminal element JRI60_RS33565 PF07714 Protein tyrosine kinase JRI60_RS33575 PF00069 Protein kinase domain JRI60_RS33595 PF04851 Type III restriction enzyme, res subunit JRI60_RS33595 PF08774 VRR-NUC domain JRI60_RS33600 PF01555 DNA methylase JRI60_RS33600 PF18273 Type III R-M EcoP15I C-terminal domain JRI60_RS33610 PF00580 UvrD/REP helicase N-terminal domain JRI60_RS33610 PF13361 UvrD-like helicase C-terminal domain JRI60_RS33620 PF00589 Phage integrase family JRI60_RS33620 PF02899 Phage integrase, N-terminal SAM-like domain JRI60_RS33630 PF03840 Preprotein translocase SecG subunit JRI60_RS33635 PF00121 Triosephosphate isomerase JRI60_RS33640 PF00162 Phosphoglycerate kinase JRI60_RS33645 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JRI60_RS33645 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JRI60_RS33655 PF01219 Prokaryotic diacylglycerol kinase JRI60_RS33675 PF17785 PUA-like domain JRI60_RS33675 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_RS33680 PF01852 START domain JRI60_RS33685 PF01966 HD domain JRI60_RS33695 PF01026 TatD related DNase JRI60_RS33705 PF09334 tRNA synthetases class I (M) JRI60_RS33705 PF01588 Putative tRNA binding domain JRI60_RS33715 PF01494 FAD binding domain JRI60_RS33720 PF00313 'Cold-shock' DNA-binding domain JRI60_RS33725 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_RS33730 PF01037 Lrp/AsnC ligand binding domain JRI60_RS33755 PF00072 Response regulator receiver domain JRI60_RS33755 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS33755 PF01627 Hpt domain JRI60_RS33755 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS33755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS33755 PF00672 HAMP domain JRI60_RS33760 PF00994 Probable molybdopterin binding domain JRI60_RS33770 PF02811 PHP domain JRI60_RS33770 PF14716 Helix-hairpin-helix domain JRI60_RS33770 PF14791 DNA polymerase beta thumb JRI60_RS33790 PF00012 Hsp70 protein JRI60_RS33795 PF00684 DnaJ central domain JRI60_RS33795 PF00226 DnaJ domain JRI60_RS33795 PF01556 DnaJ C terminal domain JRI60_RS33805 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS33805 PF06689 ClpX C4-type zinc finger JRI60_RS33805 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS33810 PF17810 Arginine decarboxylase helical bundle domain JRI60_RS33810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JRI60_RS33810 PF17944 Arginine decarboxylase C-terminal helical extension JRI60_RS33815 PF00657 GDSL-like Lipase/Acylhydrolase JRI60_RS33815 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_RS33815 PF17996 Carbohydrate esterase 2 N-terminal JRI60_RS33815 PF00404 Dockerin type I domain JRI60_RS33835 PF00722 Glycosyl hydrolases family 16 JRI60_RS33835 PF02368 Bacterial Ig-like domain (group 2) JRI60_RS33840 PF01734 Patatin-like phospholipase JRI60_RS33860 PF01916 Deoxyhypusine synthase JRI60_RS33870 PF02082 Transcriptional regulator JRI60_RS33875 PF02811 PHP domain JRI60_RS33880 PF00067 Cytochrome P450 JRI60_RS33885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS33890 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JRI60_RS33895 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JRI60_RS33900 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS33905 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JRI60_RS33910 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JRI60_RS33915 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JRI60_RS33915 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal JRI60_RS33915 PF00384 Molybdopterin oxidoreductase JRI60_RS33920 PF00146 NADH dehydrogenase JRI60_RS33925 PF00037 4Fe-4S binding domain JRI60_RS33935 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS33985 PF01551 Peptidase family M23 JRI60_RS33985 PF08525 Opacity-associated protein A N-terminal motif JRI60_RS33985 PF01476 LysM domain JRI60_RS33990 PF05853 beta-keto acid cleavage enzyme JRI60_RS33995 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS34000 PF08359 YsiA-like protein, C-terminal region JRI60_RS34000 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS34010 PF01381 Helix-turn-helix JRI60_RS34040 PF02875 Mur ligase family, glutamate ligase domain JRI60_RS34040 PF08245 Mur ligase middle domain JRI60_RS34045 PF17848 Acetyl-coA carboxylase zinc finger domain JRI60_RS34045 PF01039 Carboxyl transferase domain JRI60_RS34055 PF00027 Cyclic nucleotide-binding domain JRI60_RS34055 PF13545 Crp-like helix-turn-helix domain JRI60_RS34060 PF02769 AIR synthase related protein, C-terminal domain JRI60_RS34060 PF00586 AIR synthase related protein, N-terminal domain JRI60_RS34065 PF00551 Formyl transferase JRI60_RS34070 PF04463 Protein of unknown function (DUF523) JRI60_RS34075 PF04377 Arginine-tRNA-protein transferase, C terminus JRI60_RS34075 PF04376 Arginine-tRNA-protein transferase, N terminus JRI60_RS34080 PF01494 FAD binding domain JRI60_RS34085 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS34085 PF17932 Tetracyclin repressor-like, C-terminal domain JRI60_RS34095 PF00830 Ribosomal L28 family JRI60_RS34100 PF13580 SIS domain JRI60_RS34115 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS34115 PF00043 Glutathione S-transferase, C-terminal domain JRI60_RS34120 PF07687 Peptidase dimerisation domain JRI60_RS34120 PF01546 Peptidase family M20/M25/M40 JRI60_RS34125 PF02678 Pirin JRI60_RS34125 PF05726 Pirin C-terminal cupin domain JRI60_RS34130 PF01047 MarR family JRI60_RS34140 PF03702 Anhydro-N-acetylmuramic acid kinase JRI60_RS34145 PF00025 ADP-ribosylation factor family JRI60_RS34165 PF00067 Cytochrome P450 JRI60_RS34170 PF04072 Leucine carboxyl methyltransferase JRI60_RS34185 PF01494 FAD binding domain JRI60_RS34200 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS34225 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase JRI60_RS34235 PF00282 Pyridoxal-dependent decarboxylase conserved domain JRI60_RS34260 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_RS34265 PF00893 Small Multidrug Resistance protein JRI60_RS34325 PF00144 Beta-lactamase JRI60_RS34345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JRI60_RS34345 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS34380 PF03315 Serine dehydratase beta chain JRI60_RS34380 PF03313 Serine dehydratase alpha chain JRI60_RS34395 PF00041 Fibronectin type III domain JRI60_RS34395 PF03065 Glycosyl hydrolase family 57 JRI60_RS34395 PF03423 Carbohydrate binding domain (family 25) JRI60_RS34415 PF04185 Phosphoesterase family JRI60_RS34425 PF00140 Sigma-70 factor, region 1.2 JRI60_RS34425 PF04542 Sigma-70 region 2 JRI60_RS34425 PF04539 Sigma-70 region 3 JRI60_RS34425 PF04545 Sigma-70, region 4 JRI60_RS34430 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JRI60_RS34430 PF02378 Phosphotransferase system, EIIC JRI60_RS34435 PF00294 pfkB family carbohydrate kinase JRI60_RS34440 PF02896 PEP-utilising enzyme, TIM barrel domain JRI60_RS34440 PF00381 PTS HPr component phosphorylation site JRI60_RS34440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JRI60_RS34440 PF00391 PEP-utilising enzyme, mobile domain JRI60_RS34440 PF05524 PEP-utilising enzyme, N-terminal JRI60_RS34445 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JRI60_RS34445 PF00356 Bacterial regulatory proteins, lacI family JRI60_RS34455 PF01431 Peptidase family M13 JRI60_RS34455 PF05649 Peptidase family M13 JRI60_RS34460 PF00593 TonB dependent receptor JRI60_RS34480 PF00069 Protein kinase domain JRI60_RS34505 PF01177 Asp/Glu/Hydantoin racemase JRI60_RS34510 PF03795 YCII-related domain JRI60_RS34515 PF00849 RNA pseudouridylate synthase JRI60_RS34525 PF14403 Circularly permuted ATP-grasp type 2 JRI60_RS34535 PF13230 Glutamine amidotransferases class-II JRI60_RS34540 PF01263 Aldose 1-epimerase JRI60_RS34560 PF06441 Epoxide hydrolase N terminus JRI60_RS34565 PF05139 Erythromycin esterase JRI60_RS34565 PF00156 Phosphoribosyl transferase domain JRI60_RS34590 PF00027 Cyclic nucleotide-binding domain JRI60_RS34590 PF07885 Ion channel JRI60_RS34615 PF00106 short chain dehydrogenase JRI60_RS34620 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JRI60_RS34620 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JRI60_RS34620 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JRI60_RS34635 PF09335 SNARE associated Golgi protein JRI60_RS34640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS34640 PF01584 CheW-like domain JRI60_RS34640 PF00072 Response regulator receiver domain JRI60_RS34640 PF01627 Hpt domain JRI60_RS34650 PF00072 Response regulator receiver domain JRI60_RS34655 PF00672 HAMP domain JRI60_RS34655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS34655 PF12729 Four helix bundle sensory module for signal transduction JRI60_RS34660 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS34670 PF00069 Protein kinase domain JRI60_RS34695 PF00749 tRNA synthetases class I (E and Q), catalytic domain JRI60_RS34720 PF00158 Sigma-54 interaction domain JRI60_RS34720 PF00072 Response regulator receiver domain JRI60_RS34720 PF02954 Bacterial regulatory protein, Fis family JRI60_RS34730 PF00989 PAS fold JRI60_RS34730 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS34730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS34745 PF00364 Biotin-requiring enzyme JRI60_RS34745 PF02817 e3 binding domain JRI60_RS34745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JRI60_RS34750 PF02779 Transketolase, pyrimidine binding domain JRI60_RS34750 PF00364 Biotin-requiring enzyme JRI60_RS34750 PF02780 Transketolase, C-terminal domain JRI60_RS34755 PF00676 Dehydrogenase E1 component JRI60_RS34780 PF00149 Calcineurin-like phosphoesterase JRI60_RS34780 PF02872 5'-nucleotidase, C-terminal domain JRI60_RS34805 PF01523 Putative modulator of DNA gyrase JRI60_RS34810 PF01523 Putative modulator of DNA gyrase JRI60_RS34815 PF00437 Type II/IV secretion system protein JRI60_RS34815 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JRI60_RS34830 PF03900 Porphobilinogen deaminase, C-terminal domain JRI60_RS34830 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JRI60_RS34835 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JRI60_RS34835 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JRI60_RS34835 PF01488 Shikimate / quinate 5-dehydrogenase JRI60_RS34840 PF01578 Cytochrome C assembly protein JRI60_RS34850 PF00085 Thioredoxin JRI60_RS34860 PF00571 CBS domain JRI60_RS34860 PF01769 Divalent cation transporter JRI60_RS34860 PF03448 MgtE intracellular N domain JRI60_RS34865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS34865 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS34865 PF08446 PAS fold JRI60_RS34865 PF01590 GAF domain JRI60_RS34865 PF00360 Phytochrome region JRI60_RS34870 PF01098 Cell cycle protein JRI60_RS34875 PF00905 Penicillin binding protein transpeptidase domain JRI60_RS34875 PF03717 Penicillin-binding Protein dimerisation domain JRI60_RS34890 PF00639 PPIC-type PPIASE domain JRI60_RS34890 PF09312 SurA N-terminal domain JRI60_RS34895 PF00563 EAL domain JRI60_RS34895 PF13426 PAS domain JRI60_RS34895 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS34900 PF02545 Maf-like protein JRI60_RS34905 PF01168 Alanine racemase, N-terminal domain JRI60_RS34945 PF08459 UvrC Helix-hairpin-helix N-terminal JRI60_RS34945 PF12826 Helix-hairpin-helix motif JRI60_RS34945 PF02151 UvrB/uvrC motif JRI60_RS34945 PF01541 GIY-YIG catalytic domain JRI60_RS34950 PF02151 UvrB/uvrC motif JRI60_RS34950 PF00271 Helicase conserved C-terminal domain JRI60_RS34950 PF17757 UvrB interaction domain JRI60_RS34950 PF04851 Type III restriction enzyme, res subunit JRI60_RS34950 PF12344 Ultra-violet resistance protein B JRI60_RS34960 PF01406 tRNA synthetases class I (C) catalytic domain JRI60_RS34960 PF09190 DALR domain JRI60_RS34965 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_RS34975 PF02559 CarD-like/TRCF domain JRI60_RS34980 PF03772 Competence protein JRI60_RS34980 PF00753 Metallo-beta-lactamase superfamily JRI60_RS35005 PF00709 Adenylosuccinate synthetase JRI60_RS35010 PF00580 UvrD/REP helicase N-terminal domain JRI60_RS35010 PF12705 PD-(D/E)XK nuclease superfamily JRI60_RS35010 PF13361 UvrD-like helicase C-terminal domain JRI60_RS35040 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS35040 PF00107 Zinc-binding dehydrogenase JRI60_RS35050 PF00005 ABC transporter JRI60_RS35055 PF01032 FecCD transport family JRI60_RS35060 PF01497 Periplasmic binding protein JRI60_RS35070 PF02311 AraC-like ligand binding domain JRI60_RS35070 PF12833 Helix-turn-helix domain JRI60_RS35090 PF03756 A-factor biosynthesis hotdog domain JRI60_RS35095 PF01593 Flavin containing amine oxidoreductase JRI60_RS35100 PF04055 Radical SAM superfamily JRI60_RS35100 PF06969 HemN C-terminal domain JRI60_RS35115 PF05593 RHS Repeat JRI60_RS35120 PF00107 Zinc-binding dehydrogenase JRI60_RS35120 PF16884 N-terminal domain of oxidoreductase JRI60_RS35125 PF00069 Protein kinase domain JRI60_RS35135 PF00665 Integrase core domain JRI60_RS35140 PF01695 IstB-like ATP binding protein JRI60_RS35165 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase JRI60_RS35165 PF03033 Glycosyltransferase family 28 N-terminal domain JRI60_RS35185 PF17755 UvrA DNA-binding domain JRI60_RS35185 PF17760 UvrA interaction domain JRI60_RS35225 PF05257 CHAP domain JRI60_RS35225 PF01476 LysM domain JRI60_RS35230 PF00069 Protein kinase domain JRI60_RS35245 PF00069 Protein kinase domain JRI60_RS35245 PF03793 PASTA domain JRI60_RS35260 PF00892 EamA-like transporter family JRI60_RS35275 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain JRI60_RS35275 PF04616 Glycosyl hydrolases family 43 JRI60_RS35315 PF14245 Type IV pilin PilA JRI60_RS35315 PF07963 Prokaryotic N-terminal methylation motif JRI60_RS35335 PF00067 Cytochrome P450 JRI60_RS35335 PF00258 Flavodoxin JRI60_RS35335 PF00175 Oxidoreductase NAD-binding domain JRI60_RS35335 PF00667 FAD binding domain JRI60_RS35350 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS35350 PF17932 Tetracyclin repressor-like, C-terminal domain JRI60_RS35355 PF02803 Thiolase, C-terminal domain JRI60_RS35355 PF00108 Thiolase, N-terminal domain JRI60_RS35360 PF07690 Major Facilitator Superfamily JRI60_RS35400 PF14310 Fibronectin type III-like domain JRI60_RS35400 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_RS35400 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_RS35410 PF00082 Subtilase family JRI60_RS35410 PF05922 Peptidase inhibitor I9 JRI60_RS35415 PF00144 Beta-lactamase JRI60_RS35420 PF01638 HxlR-like helix-turn-helix JRI60_RS35435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JRI60_RS35435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JRI60_RS35440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_RS35440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_RS35445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS35445 PF00072 Response regulator receiver domain JRI60_RS35455 PF18029 Glyoxalase-like domain JRI60_RS35460 PF00199 Catalase JRI60_RS35460 PF06628 Catalase-related immune-responsive JRI60_RS35460 PF18011 C-terminal domain found in long catalases JRI60_RS35465 PF00432 Prenyltransferase and squalene oxidase repeat JRI60_RS35465 PF13243 Squalene-hopene cyclase C-terminal domain JRI60_RS35470 PF01590 GAF domain JRI60_RS35470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS35495 PF02156 Glycosyl hydrolase family 26 JRI60_RS35510 PF00069 Protein kinase domain JRI60_RS35510 PF08308 PEGA domain JRI60_RS35515 PF00158 Sigma-54 interaction domain JRI60_RS35515 PF00072 Response regulator receiver domain JRI60_RS35520 PF00069 Protein kinase domain JRI60_RS35520 PF03793 PASTA domain JRI60_RS35535 PF01740 STAS domain JRI60_RS35535 PF00916 Sulfate permease family JRI60_RS35540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS35540 PF13492 GAF domain JRI60_RS35540 PF13493 Domain of unknown function (DUF4118) JRI60_RS35540 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS35540 PF02702 Osmosensitive K+ channel His kinase sensor domain JRI60_RS35545 PF00072 Response regulator receiver domain JRI60_RS35545 PF00158 Sigma-54 interaction domain JRI60_RS35555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS35555 PF13492 GAF domain JRI60_RS35555 PF13185 GAF domain JRI60_RS35555 PF07730 Histidine kinase JRI60_RS35560 PF00171 Aldehyde dehydrogenase family JRI60_RS35565 PF00672 HAMP domain JRI60_RS35565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS35565 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS35570 PF00072 Response regulator receiver domain JRI60_RS35570 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS35600 PF00202 Aminotransferase class-III JRI60_RS35610 PF01565 FAD binding domain JRI60_RS35610 PF02913 FAD linked oxidases, C-terminal domain JRI60_RS35625 PF17171 Glutathione S-transferase, C-terminal domain JRI60_RS35625 PF17172 Glutathione S-transferase N-terminal domain JRI60_RS35635 PF00069 Protein kinase domain JRI60_RS35635 PF03793 PASTA domain JRI60_RS35650 PF00942 Cellulose binding domain JRI60_RS35650 PF03442 Carbohydrate binding domain X2 JRI60_RS35655 PF03211 Pectate lyase JRI60_RS35660 PF08220 DeoR-like helix-turn-helix domain JRI60_RS35660 PF00455 DeoR C terminal sensor domain JRI60_RS35665 PF00293 NUDIX domain JRI60_RS35670 PF00544 Pectate lyase JRI60_RS35675 PF07690 Major Facilitator Superfamily JRI60_RS35675 PF00083 Sugar (and other) transporter JRI60_RS35715 PF00795 Carbon-nitrogen hydrolase JRI60_RS35720 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JRI60_RS35755 PF09339 IclR helix-turn-helix domain JRI60_RS35770 PF13396 Phospholipase_D-nuclease N-terminal JRI60_RS35770 PF13091 PLD-like domain JRI60_RS35775 PF00313 'Cold-shock' DNA-binding domain JRI60_RS35785 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_RS35785 PF13603 Leucyl-tRNA synthetase, Domain 2 JRI60_RS35785 PF08264 Anticodon-binding domain of tRNA JRI60_RS35785 PF09334 tRNA synthetases class I (M) JRI60_RS35825 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS35825 PF00072 Response regulator receiver domain JRI60_RS35830 PF01022 Bacterial regulatory protein, arsR family JRI60_RS35870 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS35880 PF05736 OprF membrane domain JRI60_RS35880 PF00691 OmpA family JRI60_RS35895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS35915 PF06580 Histidine kinase JRI60_RS35915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS35915 PF13492 GAF domain JRI60_RS35915 PF07694 5TMR of 5TMR-LYT JRI60_RS35920 PF00072 Response regulator receiver domain JRI60_RS35920 PF04397 LytTr DNA-binding domain JRI60_RS35980 PF01618 MotA/TolQ/ExbB proton channel family JRI60_RS35985 PF02472 Biopolymer transport protein ExbD/TolR JRI60_RS35990 PF02472 Biopolymer transport protein ExbD/TolR JRI60_RS36000 PF01551 Peptidase family M23 JRI60_RS36000 PF01464 Transglycosylase SLT domain JRI60_RS36000 PF10145 Phage-related minor tail protein JRI60_RS36025 PF00891 O-methyltransferase domain JRI60_RS36035 PF00072 Response regulator receiver domain JRI60_RS36035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS36035 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS36035 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_RS36045 PF12697 Alpha/beta hydrolase family JRI60_RS36065 PF00248 Aldo/keto reductase family JRI60_RS36070 PF00067 Cytochrome P450 JRI60_RS36130 PF13396 Phospholipase_D-nuclease N-terminal JRI60_RS36130 PF13091 PLD-like domain JRI60_RS36145 PF01139 tRNA-splicing ligase RtcB JRI60_RS36150 PF02033 Ribosome-binding factor A JRI60_RS36155 PF01641 SelR domain JRI60_RS36160 PF01555 DNA methylase JRI60_RS36165 PF01197 Ribosomal protein L31 JRI60_RS36180 PF03705 CheR methyltransferase, all-alpha domain JRI60_RS36180 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS36185 PF01339 CheB methylesterase JRI60_RS36185 PF00072 Response regulator receiver domain JRI60_RS36190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS36190 PF01584 CheW-like domain JRI60_RS36190 PF01627 Hpt domain JRI60_RS36190 PF00072 Response regulator receiver domain JRI60_RS36195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS36200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS36215 PF00691 OmpA family JRI60_RS36225 PF07689 KaiB domain JRI60_RS36225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS36225 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS36240 PF05257 CHAP domain JRI60_RS36240 PF01476 LysM domain JRI60_RS36245 PF00158 Sigma-54 interaction domain JRI60_RS36245 PF02954 Bacterial regulatory protein, Fis family JRI60_RS36245 PF00072 Response regulator receiver domain JRI60_RS36250 PF07681 DoxX JRI60_RS36255 PF04545 Sigma-70, region 4 JRI60_RS36255 PF04542 Sigma-70 region 2 JRI60_RS36255 PF00140 Sigma-70 factor, region 1.2 JRI60_RS36260 PF00571 CBS domain JRI60_RS36260 PF00478 IMP dehydrogenase / GMP reductase domain JRI60_RS36270 PF00005 ABC transporter JRI60_RS36285 PF05199 GMC oxidoreductase JRI60_RS36300 PF03372 Endonuclease/Exonuclease/phosphatase family JRI60_RS36310 PF00905 Penicillin binding protein transpeptidase domain JRI60_RS36310 PF00912 Transglycosylase JRI60_RS36310 PF17092 Penicillin-binding protein OB-like domain JRI60_RS36325 PF00989 PAS fold JRI60_RS36325 PF00672 HAMP domain JRI60_RS36325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS36325 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS36350 PF00665 Integrase core domain JRI60_RS36355 PF01695 IstB-like ATP binding protein JRI60_RS36375 PF13411 MerR HTH family regulatory protein JRI60_RS36375 PF00145 C-5 cytosine-specific DNA methylase JRI60_RS36380 PF03852 DNA mismatch endonuclease Vsr JRI60_RS36395 PF00271 Helicase conserved C-terminal domain JRI60_RS36395 PF00270 DEAD/DEAH box helicase JRI60_RS36425 PF03144 Elongation factor Tu domain 2 JRI60_RS36425 PF03143 Elongation factor Tu C-terminal domain JRI60_RS36425 PF00009 Elongation factor Tu GTP binding domain JRI60_RS36435 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JRI60_RS36435 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JRI60_RS36475 PF05736 OprF membrane domain JRI60_RS36475 PF00691 OmpA family JRI60_RS36485 PF01142 tRNA pseudouridine synthase D (TruD) JRI60_RS36495 PF13462 Thioredoxin JRI60_RS36495 PF06965 Na+/H+ antiporter 1 JRI60_RS36500 PF17763 Glutaminase/Asparaginase C-terminal domain JRI60_RS36500 PF00710 Asparaginase, N-terminal JRI60_RS36505 PF17151 Periplasmic sensor domain JRI60_RS36505 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS36520 PF01165 Ribosomal protein S21 JRI60_RS36530 PF10410 DnaB-helicase binding domain of primase JRI60_RS36530 PF01807 CHC2 zinc finger JRI60_RS36530 PF08275 DNA primase catalytic core, N-terminal domain JRI60_RS36535 PF00140 Sigma-70 factor, region 1.2 JRI60_RS36535 PF03979 Sigma-70 factor, region 1.1 JRI60_RS36535 PF04542 Sigma-70 region 2 JRI60_RS36535 PF04546 Sigma-70, non-essential region JRI60_RS36535 PF04539 Sigma-70 region 3 JRI60_RS36535 PF04545 Sigma-70, region 4 JRI60_RS36590 PF00313 'Cold-shock' DNA-binding domain JRI60_RS36605 PF00072 Response regulator receiver domain JRI60_RS36605 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS36610 PF00672 HAMP domain JRI60_RS36610 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS36610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS36620 PF01061 ABC-2 type transporter JRI60_RS36625 PF00005 ABC transporter JRI60_RS36630 PF01040 UbiA prenyltransferase family JRI60_RS36650 PF00012 Hsp70 protein JRI60_RS36655 PF00012 Hsp70 protein JRI60_RS36660 PF00005 ABC transporter JRI60_RS36665 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS36670 PF13426 PAS domain JRI60_RS36670 PF07228 Stage II sporulation protein E (SpoIIE) JRI60_RS36675 PF12697 Alpha/beta hydrolase family JRI60_RS36700 PF01734 Patatin-like phospholipase JRI60_RS36710 PF00501 AMP-binding enzyme JRI60_RS36715 PF00561 alpha/beta hydrolase fold JRI60_RS36725 PF00501 AMP-binding enzyme JRI60_RS36725 PF14535 AMP-binding enzyme C-terminal domain JRI60_RS36750 PF00999 Sodium/hydrogen exchanger family JRI60_RS36780 PF00501 AMP-binding enzyme JRI60_RS36785 PF00534 Glycosyl transferases group 1 JRI60_RS36815 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS36825 PF00300 Histidine phosphatase superfamily (branch 1) JRI60_RS36830 PF01491 Frataxin-like domain JRI60_RS36840 PF01765 Ribosome recycling factor JRI60_RS36845 PF00696 Amino acid kinase family JRI60_RS36850 PF00889 Elongation factor TS JRI60_RS36855 PF00318 Ribosomal protein S2 JRI60_RS36860 PF07516 SecA Wing and Scaffold domain JRI60_RS36860 PF01043 SecA preprotein cross-linking domain JRI60_RS36860 PF07517 SecA DEAD-like domain JRI60_RS36860 PF02810 SEC-C motif JRI60_RS36865 PF01728 FtsJ-like methyltransferase JRI60_RS36865 PF18125 RlmM ferredoxin-like domain JRI60_RS36875 PF01476 LysM domain JRI60_RS36875 PF08525 Opacity-associated protein A N-terminal motif JRI60_RS36875 PF01551 Peptidase family M23 JRI60_RS36885 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS36890 PF00271 Helicase conserved C-terminal domain JRI60_RS36890 PF00176 SNF2 family N-terminal domain JRI60_RS36890 PF12419 SNF2 Helicase protein JRI60_RS36895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JRI60_RS36895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JRI60_RS36900 PF00156 Phosphoribosyl transferase domain JRI60_RS36910 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS36910 PF13977 BetI-type transcriptional repressor, C-terminal JRI60_RS36915 PF07690 Major Facilitator Superfamily JRI60_RS36920 PF01467 Cytidylyltransferase-like JRI60_RS36930 PF02872 5'-nucleotidase, C-terminal domain JRI60_RS36930 PF00149 Calcineurin-like phosphoesterase JRI60_RS36940 PF01513 ATP-NAD kinase JRI60_RS36945 PF12002 MgsA AAA+ ATPase C terminal JRI60_RS36945 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS36945 PF16193 AAA C-terminal domain JRI60_RS36950 PF00072 Response regulator receiver domain JRI60_RS36950 PF00158 Sigma-54 interaction domain JRI60_RS36950 PF02954 Bacterial regulatory protein, Fis family JRI60_RS36955 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS36955 PF13188 PAS domain JRI60_RS36955 PF13426 PAS domain JRI60_RS36955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS36955 PF00989 PAS fold JRI60_RS36960 PF05230 MASE2 domain JRI60_RS36960 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS36965 PF00535 Glycosyl transferase family 2 JRI60_RS36970 PF04794 YdjC-like protein JRI60_RS36975 PF03551 Transcriptional regulator PadR-like family JRI60_RS36975 PF13847 Methyltransferase domain JRI60_RS36985 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JRI60_RS36985 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain JRI60_RS36985 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal JRI60_RS36990 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS36990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JRI60_RS36990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JRI60_RS36995 PF02803 Thiolase, C-terminal domain JRI60_RS36995 PF00108 Thiolase, N-terminal domain JRI60_RS37010 PF01208 Uroporphyrinogen decarboxylase (URO-D) JRI60_RS37035 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase JRI60_RS37050 PF00106 short chain dehydrogenase JRI60_RS37070 PF00583 Acetyltransferase (GNAT) family JRI60_RS37080 PF03793 PASTA domain JRI60_RS37080 PF00069 Protein kinase domain JRI60_RS37085 PF00069 Protein kinase domain JRI60_RS37085 PF14032 PknH-like extracellular domain JRI60_RS37120 PF08543 Phosphomethylpyrimidine kinase JRI60_RS37125 PF00069 Protein kinase domain JRI60_RS37125 PF03793 PASTA domain JRI60_RS37135 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JRI60_RS37135 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JRI60_RS37140 PF02805 Metal binding domain of Ada JRI60_RS37140 PF06029 AlkA N-terminal domain JRI60_RS37140 PF12833 Helix-turn-helix domain JRI60_RS37140 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_RS37155 PF03793 PASTA domain JRI60_RS37155 PF00069 Protein kinase domain JRI60_RS37160 PF03781 Sulfatase-modifying factor enzyme 1 JRI60_RS37170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS37170 PF00989 PAS fold JRI60_RS37170 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS37175 PF02954 Bacterial regulatory protein, Fis family JRI60_RS37175 PF00072 Response regulator receiver domain JRI60_RS37175 PF00158 Sigma-54 interaction domain JRI60_RS37205 PF02417 Chromate transporter JRI60_RS37210 PF00069 Protein kinase domain JRI60_RS37215 PF03965 Penicillinase repressor JRI60_RS37230 PF13533 Biotin-lipoyl like JRI60_RS37235 PF00873 AcrB/AcrD/AcrF family JRI60_RS37245 PF13439 Glycosyltransferase Family 4 JRI60_RS37245 PF00534 Glycosyl transferases group 1 JRI60_RS37255 PF10079 Bacillithiol biosynthesis BshC JRI60_RS37275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS37275 PF03466 LysR substrate binding domain JRI60_RS37285 PF00873 AcrB/AcrD/AcrF family JRI60_RS37290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_RS37290 PF00529 HlyD membrane-fusion protein of T1SS JRI60_RS37295 PF02321 Outer membrane efflux protein JRI60_RS37305 PF13520 Amino acid permease JRI60_RS37370 PF11808 Phosphate regulon sensor protein PhoR JRI60_RS37370 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS37370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS37370 PF00989 PAS fold JRI60_RS37375 PF12450 von Willebrand factor JRI60_RS37375 PF00092 von Willebrand factor type A domain JRI60_RS37375 PF12034 Domain of unknown function (DUF3520) JRI60_RS37390 PF01593 Flavin containing amine oxidoreductase JRI60_RS37395 PF13419 Haloacid dehalogenase-like hydrolase JRI60_RS37400 PF00176 SNF2 family N-terminal domain JRI60_RS37400 PF00271 Helicase conserved C-terminal domain JRI60_RS37400 PF12419 SNF2 Helicase protein JRI60_RS37405 PF12697 Alpha/beta hydrolase family JRI60_RS37410 PF01627 Hpt domain JRI60_RS37410 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS37410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS37410 PF00672 HAMP domain JRI60_RS37410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS37410 PF00072 Response regulator receiver domain JRI60_RS37415 PF03928 Haem-degrading JRI60_RS37420 PF00106 short chain dehydrogenase JRI60_RS37430 PF00158 Sigma-54 interaction domain JRI60_RS37430 PF00072 Response regulator receiver domain JRI60_RS37430 PF02954 Bacterial regulatory protein, Fis family JRI60_RS37440 PF06969 HemN C-terminal domain JRI60_RS37440 PF04055 Radical SAM superfamily JRI60_RS37445 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JRI60_RS37445 PF12801 4Fe-4S binding domain JRI60_RS37445 PF13746 4Fe-4S dicluster domain JRI60_RS37450 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JRI60_RS37450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JRI60_RS37460 PF00115 Cytochrome C and Quinol oxidase polypeptide I JRI60_RS37470 PF00403 Heavy-metal-associated domain JRI60_RS37485 PF04052 TolB amino-terminal domain JRI60_RS37485 PF07676 WD40-like Beta Propeller Repeat JRI60_RS37495 PF13860 FlgD Ig-like domain JRI60_RS37495 PF05922 Peptidase inhibitor I9 JRI60_RS37495 PF02225 PA domain JRI60_RS37495 PF00082 Subtilase family JRI60_RS37505 PF00069 Protein kinase domain JRI60_RS37510 PF10117 McrBC 5-methylcytosine restriction system component JRI60_RS37515 PF07728 AAA domain (dynein-related subfamily) JRI60_RS37515 PF12102 Domain of unknown function (DUF3578) JRI60_RS37540 PF13247 4Fe-4S dicluster domain JRI60_RS37540 PF00037 4Fe-4S binding domain JRI60_RS37575 PF03150 Di-haem cytochrome c peroxidase JRI60_RS37575 PF00034 Cytochrome c JRI60_RS37595 PF03150 Di-haem cytochrome c peroxidase JRI60_RS37595 PF00034 Cytochrome c JRI60_RS37600 PF00155 Aminotransferase class I and II JRI60_RS37605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS37610 PF00501 AMP-binding enzyme JRI60_RS37610 PF00668 Condensation domain JRI60_RS37610 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS37610 PF00550 Phosphopantetheine attachment site JRI60_RS37615 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS37615 PF00501 AMP-binding enzyme JRI60_RS37615 PF00550 Phosphopantetheine attachment site JRI60_RS37615 PF00668 Condensation domain JRI60_RS37620 PF12706 Beta-lactamase superfamily domain JRI60_RS37620 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain JRI60_RS37630 PF04389 Peptidase family M28 JRI60_RS37650 PF00557 Metallopeptidase family M24 JRI60_RS37650 PF05195 Aminopeptidase P, N-terminal domain JRI60_RS37660 PF01207 Dihydrouridine synthase (Dus) JRI60_RS37670 PF05721 Phytanoyl-CoA dioxygenase (PhyH) JRI60_RS37675 PF00251 Glycosyl hydrolases family 32 N-terminal domain JRI60_RS37675 PF08244 Glycosyl hydrolases family 32 C terminal JRI60_RS37710 PF04101 Glycosyltransferase family 28 C-terminal domain JRI60_RS37720 PF00174 Oxidoreductase molybdopterin binding domain JRI60_RS37725 PF00462 Glutaredoxin JRI60_RS37730 PF01722 BolA-like protein JRI60_RS37735 PF02622 Uncharacterized ACR, COG1678 JRI60_RS37740 PF00072 Response regulator receiver domain JRI60_RS37755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JRI60_RS37760 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS37760 PF05362 Lon protease (S16) C-terminal proteolytic domain JRI60_RS37760 PF02190 ATP-dependent protease La (LON) substrate-binding domain JRI60_RS37765 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JRI60_RS37765 PF00326 Prolyl oligopeptidase family JRI60_RS37770 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS37770 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS37770 PF06689 ClpX C4-type zinc finger JRI60_RS37775 PF00574 Clp protease JRI60_RS37780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_RS37780 PF05697 Bacterial trigger factor protein (TF) JRI60_RS37780 PF05698 Bacterial trigger factor protein (TF) C-terminus JRI60_RS37820 PF01725 Ham1 family JRI60_RS37825 PF03725 3' exoribonuclease family, domain 2 JRI60_RS37825 PF01138 3' exoribonuclease family, domain 1 JRI60_RS37830 PF11741 AMIN domain JRI60_RS37830 PF01520 N-acetylmuramoyl-L-alanine amidase JRI60_RS37840 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_RS37850 PF13525 Outer membrane lipoprotein JRI60_RS37855 PF02631 RecX family JRI60_RS37865 PF00437 Type II/IV secretion system protein JRI60_RS37870 PF00380 Ribosomal protein S9/S16 JRI60_RS37875 PF00572 Ribosomal protein L13 JRI60_RS37880 PF00580 UvrD/REP helicase N-terminal domain JRI60_RS37880 PF13361 UvrD-like helicase C-terminal domain JRI60_RS37895 PF17785 PUA-like domain JRI60_RS37895 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_RS37950 PF01026 TatD related DNase JRI60_RS37955 PF00899 ThiF family JRI60_RS37975 PF00106 short chain dehydrogenase JRI60_RS37980 PF00633 Helix-hairpin-helix motif JRI60_RS37980 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_RS37980 PF14815 NUDIX domain JRI60_RS38015 PF12697 Alpha/beta hydrolase family JRI60_RS38030 PF02607 B12 binding domain JRI60_RS38030 PF02574 Homocysteine S-methyltransferase JRI60_RS38030 PF00809 Pterin binding enzyme JRI60_RS38030 PF02310 B12 binding domain JRI60_RS38030 PF02965 Vitamin B12 dependent methionine synthase, activation domain JRI60_RS38035 PF01209 ubiE/COQ5 methyltransferase family JRI60_RS38050 PF13380 CoA binding domain JRI60_RS38065 PF00069 Protein kinase domain JRI60_RS38080 PF13369 Transglutaminase-like superfamily JRI60_RS38085 PF00293 NUDIX domain JRI60_RS38100 PF00501 AMP-binding enzyme JRI60_RS38100 PF01553 Acyltransferase JRI60_RS38140 PF00107 Zinc-binding dehydrogenase JRI60_RS38140 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS38145 PF07478 D-ala D-ala ligase C-terminus JRI60_RS38155 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JRI60_RS38155 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JRI60_RS38160 PF00107 Zinc-binding dehydrogenase JRI60_RS38160 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS38175 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS38185 PF01967 MoaC family JRI60_RS38190 PF01053 Cys/Met metabolism PLP-dependent enzyme JRI60_RS38195 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS38200 PF00027 Cyclic nucleotide-binding domain JRI60_RS38200 PF00520 Ion transport protein JRI60_RS38205 PF13426 PAS domain JRI60_RS38205 PF00672 HAMP domain JRI60_RS38205 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS38205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS38210 PF00072 Response regulator receiver domain JRI60_RS38210 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS38215 PF00072 Response regulator receiver domain JRI60_RS38215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS38215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS38215 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS38215 PF01627 Hpt domain JRI60_RS38215 PF00672 HAMP domain JRI60_RS38220 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS38220 PF00072 Response regulator receiver domain JRI60_RS38220 PF00563 EAL domain JRI60_RS38245 PF00069 Protein kinase domain JRI60_RS38320 PF00741 Gas vesicle protein JRI60_RS38335 PF00741 Gas vesicle protein JRI60_RS38345 PF00741 Gas vesicle protein JRI60_RS38365 PF13302 Acetyltransferase (GNAT) domain JRI60_RS38375 PF00857 Isochorismatase family JRI60_RS38380 PF07969 Amidohydrolase family JRI60_RS38385 PF07690 Major Facilitator Superfamily JRI60_RS38390 PF01810 LysE type translocator JRI60_RS38405 PF00899 ThiF family JRI60_RS38405 PF00581 Rhodanese-like domain JRI60_RS38410 PF02581 Thiamine monophosphate synthase JRI60_RS38415 PF05690 Thiazole biosynthesis protein ThiG JRI60_RS38425 PF01266 FAD dependent oxidoreductase JRI60_RS38440 PF00067 Cytochrome P450 JRI60_RS38445 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JRI60_RS38455 PF01878 EVE domain JRI60_RS38470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS38470 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS38470 PF00989 PAS fold JRI60_RS38490 PF00248 Aldo/keto reductase family JRI60_RS38495 PF04002 RadC-like JAB domain JRI60_RS38505 PF00270 DEAD/DEAH box helicase JRI60_RS38505 PF00271 Helicase conserved C-terminal domain JRI60_RS38505 PF00570 HRDC domain JRI60_RS38505 PF16124 RecQ zinc-binding JRI60_RS38505 PF09382 RQC domain JRI60_RS38535 PF01553 Acyltransferase JRI60_RS38550 PF03793 PASTA domain JRI60_RS38550 PF00069 Protein kinase domain JRI60_RS38560 PF00535 Glycosyl transferase family 2 JRI60_RS38565 PF01593 Flavin containing amine oxidoreductase JRI60_RS38575 PF02403 Seryl-tRNA synthetase N-terminal domain JRI60_RS38575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JRI60_RS38595 PF14437 MafB19-like deaminase JRI60_RS38620 PF12169 DNA polymerase III subunits gamma and tau domain III JRI60_RS38630 PF02575 YbaB/EbfC DNA-binding family JRI60_RS38635 PF13662 Toprim domain JRI60_RS38635 PF02132 RecR protein JRI60_RS38640 PF00069 Protein kinase domain JRI60_RS38660 PF00025 ADP-ribosylation factor family JRI60_RS38715 PF00459 Inositol monophosphatase family JRI60_RS38720 PF00578 AhpC/TSA family JRI60_RS38725 PF01225 Mur ligase family, catalytic domain JRI60_RS38725 PF08245 Mur ligase middle domain JRI60_RS38725 PF02875 Mur ligase family, glutamate ligase domain JRI60_RS38730 PF00144 Beta-lactamase JRI60_RS38735 PF02016 LD-carboxypeptidase N-terminal domain JRI60_RS38735 PF17676 LD-carboxypeptidase C-terminal domain JRI60_RS38740 PF01029 NusB family JRI60_RS38740 PF01189 16S rRNA methyltransferase RsmB/F JRI60_RS38760 PF00082 Subtilase family JRI60_RS38765 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS38775 PF01609 Transposase DDE domain JRI60_RS38785 PF12706 Beta-lactamase superfamily domain JRI60_RS38815 PF01062 Bestrophin, RFP-TM, chloride channel JRI60_RS38825 PF01554 MatE JRI60_RS38880 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS38880 PF00668 Condensation domain JRI60_RS38880 PF00550 Phosphopantetheine attachment site JRI60_RS38880 PF00975 Thioesterase domain JRI60_RS38880 PF00501 AMP-binding enzyme JRI60_RS38900 PF00550 Phosphopantetheine attachment site JRI60_RS38900 PF14765 Polyketide synthase dehydratase JRI60_RS38900 PF08659 KR domain JRI60_RS38900 PF00668 Condensation domain JRI60_RS38900 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS38900 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS38900 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS38900 PF00501 AMP-binding enzyme JRI60_RS38900 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS38905 PF00891 O-methyltransferase domain JRI60_RS38915 PF04616 Glycosyl hydrolases family 43 JRI60_RS38935 PF00155 Aminotransferase class I and II JRI60_RS38945 PF00266 Aminotransferase class-V JRI60_RS38950 PF00248 Aldo/keto reductase family JRI60_RS38955 PF14760 Rnk N-terminus JRI60_RS38955 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_RS38960 PF04715 Anthranilate synthase component I, N terminal region JRI60_RS38960 PF00425 chorismate binding enzyme JRI60_RS38965 PF00117 Glutamine amidotransferase class-I JRI60_RS38975 PF07689 KaiB domain JRI60_RS38975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS38975 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS38980 PF01479 S4 domain JRI60_RS38980 PF00849 RNA pseudouridylate synthase JRI60_RS39000 PF13302 Acetyltransferase (GNAT) domain JRI60_RS39025 PF00069 Protein kinase domain JRI60_RS39055 PF04235 Protein of unknown function (DUF418) JRI60_RS39060 PF13462 Thioredoxin JRI60_RS39060 PF06965 Na+/H+ antiporter 1 JRI60_RS39070 PF01625 Peptide methionine sulfoxide reductase JRI60_RS39095 PF03594 Benzoate membrane transport protein JRI60_RS39105 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS39105 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_RS39105 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_RS39105 PF01799 [2Fe-2S] binding domain JRI60_RS39110 PF01799 [2Fe-2S] binding domain JRI60_RS39110 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS39140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS39140 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS39155 PF00501 AMP-binding enzyme JRI60_RS39155 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS39160 PF07690 Major Facilitator Superfamily JRI60_RS39205 PF16363 GDP-mannose 4,6 dehydratase JRI60_RS39210 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS39210 PF06470 SMC proteins Flexible Hinge Domain JRI60_RS39220 PF01551 Peptidase family M23 JRI60_RS39220 PF10145 Phage-related minor tail protein JRI60_RS39220 PF01464 Transglycosylase SLT domain JRI60_RS39235 PF02954 Bacterial regulatory protein, Fis family JRI60_RS39235 PF00158 Sigma-54 interaction domain JRI60_RS39235 PF01590 GAF domain JRI60_RS39240 PF00578 AhpC/TSA family JRI60_RS39245 PF02627 Carboxymuconolactone decarboxylase family JRI60_RS39250 PF00210 Ferritin-like domain JRI60_RS39260 PF00326 Prolyl oligopeptidase family JRI60_RS39260 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JRI60_RS39265 PF05649 Peptidase family M13 JRI60_RS39265 PF01431 Peptidase family M13 JRI60_RS39290 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS39290 PF17932 Tetracyclin repressor-like, C-terminal domain JRI60_RS39295 PF00561 alpha/beta hydrolase fold JRI60_RS39300 PF00561 alpha/beta hydrolase fold JRI60_RS39305 PF00155 Aminotransferase class I and II JRI60_RS39315 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JRI60_RS39315 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JRI60_RS39325 PF01488 Shikimate / quinate 5-dehydrogenase JRI60_RS39325 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JRI60_RS39325 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JRI60_RS39330 PF00392 Bacterial regulatory proteins, gntR family JRI60_RS39330 PF00155 Aminotransferase class I and II JRI60_RS39340 PF00701 Dihydrodipicolinate synthetase family JRI60_RS39345 PF08534 Redoxin JRI60_RS39355 PF13482 RNase_H superfamily JRI60_RS39360 PF00270 DEAD/DEAH box helicase JRI60_RS39360 PF09369 Domain of unknown function (DUF1998) JRI60_RS39360 PF00271 Helicase conserved C-terminal domain JRI60_RS39365 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_RS39390 PF01266 FAD dependent oxidoreductase JRI60_RS39390 PF00355 Rieske [2Fe-2S] domain JRI60_RS39395 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS39395 PF00072 Response regulator receiver domain JRI60_RS39395 PF01627 Hpt domain JRI60_RS39395 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS39395 PF00672 HAMP domain JRI60_RS39395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS39400 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS39400 PF00072 Response regulator receiver domain JRI60_RS39405 PF13411 MerR HTH family regulatory protein JRI60_RS39425 PF00005 ABC transporter JRI60_RS39425 PF13732 Domain of unknown function (DUF4162) JRI60_RS39430 PF08338 Domain of unknown function (DUF1731) JRI60_RS39430 PF01370 NAD dependent epimerase/dehydratase family JRI60_RS39435 PF01300 Telomere recombination JRI60_RS39435 PF03481 Putative GTP-binding controlling metal-binding JRI60_RS39445 PF00762 Ferrochelatase JRI60_RS39450 PF04379 ApaG domain JRI60_RS39455 PF03741 Integral membrane protein TerC family JRI60_RS39460 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_RS39460 PF00128 Alpha amylase, catalytic domain JRI60_RS39465 PF00128 Alpha amylase, catalytic domain JRI60_RS39475 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JRI60_RS39495 PF00501 AMP-binding enzyme JRI60_RS39495 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS39500 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JRI60_RS39505 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS39510 PF00483 Nucleotidyl transferase JRI60_RS39520 PF01139 tRNA-splicing ligase RtcB JRI60_RS39525 PF00989 PAS fold JRI60_RS39525 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS39525 PF00672 HAMP domain JRI60_RS39525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS39525 PF18698 Histidine kinase sensor domain JRI60_RS39530 PF00962 Adenosine/AMP deaminase JRI60_RS39545 PF13361 UvrD-like helicase C-terminal domain JRI60_RS39545 PF00580 UvrD/REP helicase N-terminal domain JRI60_RS39575 PF13460 NAD(P)H-binding JRI60_RS39580 PF00691 OmpA family JRI60_RS39580 PF05736 OprF membrane domain JRI60_RS39595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS39595 PF00072 Response regulator receiver domain JRI60_RS39595 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_RS39595 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS39600 PF00149 Calcineurin-like phosphoesterase JRI60_RS39610 PF00069 Protein kinase domain JRI60_RS39610 PF07238 PilZ domain JRI60_RS39620 PF00672 HAMP domain JRI60_RS39620 PF00989 PAS fold JRI60_RS39620 PF18698 Histidine kinase sensor domain JRI60_RS39620 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS39620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS39625 PF00072 Response regulator receiver domain JRI60_RS39630 PF01590 GAF domain JRI60_RS39630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS39630 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS39630 PF08446 PAS fold JRI60_RS39630 PF00360 Phytochrome region JRI60_RS39635 PF08448 PAS fold JRI60_RS39635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS39635 PF00072 Response regulator receiver domain JRI60_RS39635 PF13426 PAS domain JRI60_RS39635 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS39705 PF00664 ABC transporter transmembrane region JRI60_RS39705 PF00005 ABC transporter JRI60_RS39705 PF03412 Peptidase C39 family JRI60_RS39715 PF18030 RimK PreATP-grasp domain JRI60_RS39715 PF08443 RimK-like ATP-grasp domain JRI60_RS39815 PF07993 Male sterility protein JRI60_RS39815 PF00550 Phosphopantetheine attachment site JRI60_RS39815 PF00668 Condensation domain JRI60_RS39815 PF00501 AMP-binding enzyme JRI60_RS39815 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS39820 PF00550 Phosphopantetheine attachment site JRI60_RS39820 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS39820 PF00668 Condensation domain JRI60_RS39820 PF00501 AMP-binding enzyme JRI60_RS39830 PF04389 Peptidase family M28 JRI60_RS39850 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS39850 PF02861 Clp amino terminal domain, pathogenicity island component JRI60_RS39850 PF17871 AAA lid domain JRI60_RS39850 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS39850 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS39875 PF07691 PA14 domain JRI60_RS39875 PF12791 Anti-sigma factor N-terminus JRI60_RS39880 PF01960 ArgJ family JRI60_RS39895 PF00561 alpha/beta hydrolase fold JRI60_RS39900 PF00106 short chain dehydrogenase JRI60_RS39910 PF00485 Phosphoribulokinase / Uridine kinase family JRI60_RS39975 PF07728 AAA domain (dynein-related subfamily) JRI60_RS39985 PF05762 VWA domain containing CoxE-like protein JRI60_RS39990 PF04072 Leucine carboxyl methyltransferase JRI60_RS40010 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS40010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS40035 PF08448 PAS fold JRI60_RS40035 PF00072 Response regulator receiver domain JRI60_RS40035 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS40035 PF13188 PAS domain JRI60_RS40035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS40040 PF00072 Response regulator receiver domain JRI60_RS40055 PF00753 Metallo-beta-lactamase superfamily JRI60_RS40055 PF17770 Ribonuclease J C-terminal domain JRI60_RS40055 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JRI60_RS40060 PF04461 Protein of unknown function (DUF520) JRI60_RS40070 PF00919 Uncharacterized protein family UPF0004 JRI60_RS40070 PF18693 TRAM domain JRI60_RS40070 PF04055 Radical SAM superfamily JRI60_RS40110 PF01926 50S ribosome-binding GTPase JRI60_RS40110 PF01018 GTP1/OBG JRI60_RS40115 PF01016 Ribosomal L27 protein JRI60_RS40120 PF00829 Ribosomal prokaryotic L21 protein JRI60_RS40140 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS40140 PF00989 PAS fold JRI60_RS40140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS40140 PF13426 PAS domain JRI60_RS40140 PF13493 Domain of unknown function (DUF4118) JRI60_RS40140 PF08447 PAS fold JRI60_RS40150 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS40150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS40180 PF01546 Peptidase family M20/M25/M40 JRI60_RS40180 PF07687 Peptidase dimerisation domain JRI60_RS40185 PF03466 LysR substrate binding domain JRI60_RS40185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS40205 PF00072 Response regulator receiver domain JRI60_RS40205 PF04397 LytTr DNA-binding domain JRI60_RS40210 PF06580 Histidine kinase JRI60_RS40210 PF07694 5TMR of 5TMR-LYT JRI60_RS40215 PF02934 GatB/GatE catalytic domain JRI60_RS40215 PF02637 GatB domain JRI60_RS40220 PF01425 Amidase JRI60_RS40225 PF02686 Glu-tRNAGln amidotransferase C subunit JRI60_RS40235 PF01580 FtsK/SpoIIIE family JRI60_RS40235 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JRI60_RS40235 PF17854 FtsK alpha domain JRI60_RS40235 PF09397 Ftsk gamma domain JRI60_RS40245 PF00691 OmpA family JRI60_RS40260 PF01170 Putative RNA methylase family UPF0020 JRI60_RS40260 PF10672 S-adenosylmethionine-dependent methyltransferase JRI60_RS40260 PF02926 THUMP domain JRI60_RS40265 PF02660 Glycerol-3-phosphate acyltransferase JRI60_RS40300 PF00593 TonB dependent receptor JRI60_RS40310 PF01618 MotA/TolQ/ExbB proton channel family JRI60_RS40315 PF02472 Biopolymer transport protein ExbD/TolR JRI60_RS40320 PF02472 Biopolymer transport protein ExbD/TolR JRI60_RS40335 PF13335 Magnesium chelatase, subunit ChlI C-terminal JRI60_RS40335 PF01078 Magnesium chelatase, subunit ChlI JRI60_RS40340 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS40345 PF01553 Acyltransferase JRI60_RS40350 PF00154 recA bacterial DNA recombination protein JRI60_RS40365 PF02464 Competence-damaged protein JRI60_RS40365 PF00994 Probable molybdopterin binding domain JRI60_RS40365 PF18146 Damage-inducible protein CinA KH domain JRI60_RS40370 PF01066 CDP-alcohol phosphatidyltransferase JRI60_RS40385 PF00216 Bacterial DNA-binding protein JRI60_RS40390 PF01476 LysM domain JRI60_RS40390 PF01551 Peptidase family M23 JRI60_RS40390 PF08525 Opacity-associated protein A N-terminal motif JRI60_RS40395 PF01212 Beta-eliminating lyase JRI60_RS40400 PF00730 HhH-GPD superfamily base excision DNA repair protein JRI60_RS40400 PF00633 Helix-hairpin-helix motif JRI60_RS40405 PF01327 Polypeptide deformylase JRI60_RS40415 PF01556 DnaJ C terminal domain JRI60_RS40415 PF00226 DnaJ domain JRI60_RS40415 PF00684 DnaJ central domain JRI60_RS40420 PF18074 Primosomal protein N C-terminal domain JRI60_RS40420 PF00271 Helicase conserved C-terminal domain JRI60_RS40420 PF17764 3′ DNA-binding domain (3′BD) JRI60_RS40420 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JRI60_RS40420 PF04851 Type III restriction enzyme, res subunit JRI60_RS40450 PF00849 RNA pseudouridylate synthase JRI60_RS40450 PF01479 S4 domain JRI60_RS40490 PF00535 Glycosyl transferase family 2 JRI60_RS40510 PF00849 RNA pseudouridylate synthase JRI60_RS40510 PF01479 S4 domain JRI60_RS40560 PF18698 Histidine kinase sensor domain JRI60_RS40560 PF00672 HAMP domain JRI60_RS40560 PF00989 PAS fold JRI60_RS40560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS40560 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS40565 PF06745 KaiC JRI60_RS40575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS40575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS40575 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS40605 PF06441 Epoxide hydrolase N terminus JRI60_RS40630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS40630 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS40630 PF00672 HAMP domain JRI60_RS40635 PF00069 Protein kinase domain JRI60_RS40640 PF00158 Sigma-54 interaction domain JRI60_RS40640 PF00072 Response regulator receiver domain JRI60_RS40640 PF02954 Bacterial regulatory protein, Fis family JRI60_RS40645 PF00465 Iron-containing alcohol dehydrogenase JRI60_RS40650 PF03061 Thioesterase superfamily JRI60_RS40665 PF03793 PASTA domain JRI60_RS40665 PF00069 Protein kinase domain JRI60_RS40710 PF03466 LysR substrate binding domain JRI60_RS40710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS40725 PF00069 Protein kinase domain JRI60_RS40730 PF00672 HAMP domain JRI60_RS40730 PF18698 Histidine kinase sensor domain JRI60_RS40730 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS40730 PF00989 PAS fold JRI60_RS40730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS40735 PF01029 NusB family JRI60_RS40735 PF01189 16S rRNA methyltransferase RsmB/F JRI60_RS40740 PF01220 Dehydroquinase class II JRI60_RS40745 PF02911 Formyl transferase, C-terminal domain JRI60_RS40745 PF00551 Formyl transferase JRI60_RS40770 PF07732 Multicopper oxidase JRI60_RS40770 PF07731 Multicopper oxidase JRI60_RS40805 PF01740 STAS domain JRI60_RS40810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_RS40810 PF00128 Alpha amylase, catalytic domain JRI60_RS40815 PF01740 STAS domain JRI60_RS40835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS40835 PF00183 Hsp90 protein JRI60_RS40845 PF00248 Aldo/keto reductase family JRI60_RS40850 PF00072 Response regulator receiver domain JRI60_RS40850 PF00158 Sigma-54 interaction domain JRI60_RS40850 PF02954 Bacterial regulatory protein, Fis family JRI60_RS40855 PF13188 PAS domain JRI60_RS40855 PF08448 PAS fold JRI60_RS40855 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS40855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS40855 PF00072 Response regulator receiver domain JRI60_RS40860 PF00575 S1 RNA binding domain JRI60_RS40860 PF17674 HHH domain JRI60_RS40860 PF16921 Tex protein YqgF-like domain JRI60_RS40860 PF09371 Tex-like protein N-terminal domain JRI60_RS40870 PF00593 TonB dependent receptor JRI60_RS40880 PF01070 FMN-dependent dehydrogenase JRI60_RS40885 PF01235 Sodium:alanine symporter family JRI60_RS40890 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS40905 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JRI60_RS40905 PF13378 Enolase C-terminal domain-like JRI60_RS40910 PF07687 Peptidase dimerisation domain JRI60_RS40910 PF01546 Peptidase family M20/M25/M40 JRI60_RS40930 PF00550 Phosphopantetheine attachment site JRI60_RS40930 PF00501 AMP-binding enzyme JRI60_RS40930 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS40930 PF00668 Condensation domain JRI60_RS40935 PF00005 ABC transporter JRI60_RS40935 PF00664 ABC transporter transmembrane region JRI60_RS40940 PF00154 recA bacterial DNA recombination protein JRI60_RS40950 PF00069 Protein kinase domain JRI60_RS40955 PF02867 Ribonucleotide reductase, barrel domain JRI60_RS40955 PF03477 ATP cone domain JRI60_RS40955 PF00317 Ribonucleotide reductase, all-alpha domain JRI60_RS40960 PF00268 Ribonucleotide reductase, small chain JRI60_RS40970 PF01380 SIS domain JRI60_RS40975 PF12804 MobA-like NTP transferase domain JRI60_RS40975 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_RS41010 PF00158 Sigma-54 interaction domain JRI60_RS41010 PF02954 Bacterial regulatory protein, Fis family JRI60_RS41010 PF00072 Response regulator receiver domain JRI60_RS41015 PF00551 Formyl transferase JRI60_RS41015 PF01842 ACT domain JRI60_RS41020 PF00005 ABC transporter JRI60_RS41030 PF00561 alpha/beta hydrolase fold JRI60_RS41080 PF00270 DEAD/DEAH box helicase JRI60_RS41080 PF00271 Helicase conserved C-terminal domain JRI60_RS41080 PF03880 DbpA RNA binding domain JRI60_RS41090 PF02678 Pirin JRI60_RS41090 PF17954 Quercetinase C-terminal cupin domain JRI60_RS41095 PF04264 YceI-like domain JRI60_RS41110 PF00472 RF-1 domain JRI60_RS41110 PF03462 PCRF domain JRI60_RS41115 PF02824 TGS domain JRI60_RS41115 PF13291 ACT domain JRI60_RS41115 PF04607 Region found in RelA / SpoT proteins JRI60_RS41125 PF00694 Aconitase C-terminal domain JRI60_RS41125 PF00330 Aconitase family (aconitate hydratase) JRI60_RS41135 PF01068 ATP dependent DNA ligase domain JRI60_RS41135 PF04679 ATP dependent DNA ligase C terminal region JRI60_RS41135 PF13298 DNA polymerase Ligase (LigD) JRI60_RS41140 PF00072 Response regulator receiver domain JRI60_RS41140 PF02954 Bacterial regulatory protein, Fis family JRI60_RS41140 PF00158 Sigma-54 interaction domain JRI60_RS41150 PF00069 Protein kinase domain JRI60_RS41155 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS41155 PF13191 AAA ATPase domain JRI60_RS41165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS41165 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS41165 PF00672 HAMP domain JRI60_RS41180 PF03060 Nitronate monooxygenase JRI60_RS41190 PF03466 LysR substrate binding domain JRI60_RS41190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS41205 PF00069 Protein kinase domain JRI60_RS41205 PF03793 PASTA domain JRI60_RS41215 PF01625 Peptide methionine sulfoxide reductase JRI60_RS41230 PF00106 short chain dehydrogenase JRI60_RS41235 PF03466 LysR substrate binding domain JRI60_RS41235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS41250 PF13614 AAA domain JRI60_RS41250 PF13807 G-rich domain on putative tyrosine kinase JRI60_RS41250 PF02706 Chain length determinant protein JRI60_RS41265 PF00501 AMP-binding enzyme JRI60_RS41265 PF16177 Acetyl-coenzyme A synthetase N-terminus JRI60_RS41265 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS41270 PF02743 Cache domain JRI60_RS41270 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS41270 PF00672 HAMP domain JRI60_RS41295 PF04115 Ureidoglycolate lyase JRI60_RS41300 PF13091 PLD-like domain JRI60_RS41300 PF13396 Phospholipase_D-nuclease N-terminal JRI60_RS41305 PF16697 Inner membrane component of T3SS, cytoplasmic domain JRI60_RS41325 PF00696 Amino acid kinase family JRI60_RS41325 PF01472 PUA domain JRI60_RS41340 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JRI60_RS41340 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JRI60_RS41350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS41350 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS41350 PF00989 PAS fold JRI60_RS41350 PF16736 Single Cache-like JRI60_RS41355 PF00072 Response regulator receiver domain JRI60_RS41355 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS41380 PF01979 Amidohydrolase family JRI60_RS41385 PF00158 Sigma-54 interaction domain JRI60_RS41385 PF02954 Bacterial regulatory protein, Fis family JRI60_RS41385 PF01590 GAF domain JRI60_RS41390 PF00144 Beta-lactamase JRI60_RS41405 PF12146 Serine aminopeptidase, S33 JRI60_RS41430 PF05199 GMC oxidoreductase JRI60_RS41430 PF00732 GMC oxidoreductase JRI60_RS41435 PF03793 PASTA domain JRI60_RS41435 PF00069 Protein kinase domain JRI60_RS41455 PF00403 Heavy-metal-associated domain JRI60_RS41460 PF01979 Amidohydrolase family JRI60_RS41480 PF00264 Common central domain of tyrosinase JRI60_RS41490 PF00361 Proton-conducting membrane transporter JRI60_RS41520 PF13180 PDZ domain JRI60_RS41615 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS41615 PF17149 Periplasmic sensor domain found in signal transduction proteins JRI60_RS41615 PF01627 Hpt domain JRI60_RS41615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS41615 PF00672 HAMP domain JRI60_RS41615 PF00072 Response regulator receiver domain JRI60_RS41620 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS41625 PF01925 Sulfite exporter TauE/SafE JRI60_RS41630 PF03466 LysR substrate binding domain JRI60_RS41630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS41635 PF00578 AhpC/TSA family JRI60_RS41645 PF12833 Helix-turn-helix domain JRI60_RS41645 PF14525 AraC-binding-like domain JRI60_RS41655 PF00561 alpha/beta hydrolase fold JRI60_RS41660 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS41665 PF00115 Cytochrome C and Quinol oxidase polypeptide I JRI60_RS41680 PF00686 Starch binding domain JRI60_RS41680 PF09081 Domain of unknown function (DUF1921) JRI60_RS41680 PF00128 Alpha amylase, catalytic domain JRI60_RS41700 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JRI60_RS41705 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS41705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS41705 PF00989 PAS fold JRI60_RS41710 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS41710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS41715 PF08447 PAS fold JRI60_RS41715 PF08448 PAS fold JRI60_RS41715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS41725 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_RS41725 PF00128 Alpha amylase, catalytic domain JRI60_RS41745 PF02254 TrkA-N domain JRI60_RS41745 PF00999 Sodium/hydrogen exchanger family JRI60_RS41755 PF03471 Transporter associated domain JRI60_RS41755 PF00571 CBS domain JRI60_RS41770 PF03793 PASTA domain JRI60_RS41770 PF00069 Protein kinase domain JRI60_RS41775 PF08323 Starch synthase catalytic domain JRI60_RS41775 PF00534 Glycosyl transferases group 1 JRI60_RS41780 PF01243 Pyridoxamine 5'-phosphate oxidase JRI60_RS41780 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JRI60_RS41785 PF00106 short chain dehydrogenase JRI60_RS41790 PF01593 Flavin containing amine oxidoreductase JRI60_RS41795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS41795 PF06580 Histidine kinase JRI60_RS41795 PF07694 5TMR of 5TMR-LYT JRI60_RS41810 PF01048 Phosphorylase superfamily JRI60_RS41820 PF01695 IstB-like ATP binding protein JRI60_RS41825 PF00665 Integrase core domain JRI60_RS41840 PF00144 Beta-lactamase JRI60_RS41865 PF00067 Cytochrome P450 JRI60_RS41870 PF00067 Cytochrome P450 JRI60_RS41885 PF00881 Nitroreductase family JRI60_RS41890 PF00296 Luciferase-like monooxygenase JRI60_RS41900 PF03413 Peptidase propeptide and YPEB domain JRI60_RS41900 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS41900 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS41900 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS41900 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_RS41940 PF00753 Metallo-beta-lactamase superfamily JRI60_RS41940 PF10996 Beta-Casp domain JRI60_RS41940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JRI60_RS41955 PF00106 short chain dehydrogenase JRI60_RS41960 PF06719 AraC-type transcriptional regulator N-terminus JRI60_RS41960 PF12833 Helix-turn-helix domain JRI60_RS41965 PF13229 Right handed beta helix region JRI60_RS41965 PF12708 Pectate lyase superfamily protein JRI60_RS41965 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) JRI60_RS41970 PF00106 short chain dehydrogenase JRI60_RS41975 PF00482 Type II secretion system (T2SS), protein F JRI60_RS41985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS41990 PF00480 ROK family JRI60_RS42005 PF04679 ATP dependent DNA ligase C terminal region JRI60_RS42005 PF01068 ATP dependent DNA ligase domain JRI60_RS42005 PF04675 DNA ligase N terminus JRI60_RS42010 PF00271 Helicase conserved C-terminal domain JRI60_RS42010 PF08494 DEAD/H associated JRI60_RS42010 PF00270 DEAD/DEAH box helicase JRI60_RS42020 PF00067 Cytochrome P450 JRI60_RS42025 PF04397 LytTr DNA-binding domain JRI60_RS42025 PF00072 Response regulator receiver domain JRI60_RS42040 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS42040 PF07694 5TMR of 5TMR-LYT JRI60_RS42065 PF04055 Radical SAM superfamily JRI60_RS42075 PF01494 FAD binding domain JRI60_RS42090 PF00749 tRNA synthetases class I (E and Q), catalytic domain JRI60_RS42110 PF00989 PAS fold JRI60_RS42110 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42110 PF18698 Histidine kinase sensor domain JRI60_RS42110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42110 PF00672 HAMP domain JRI60_RS42115 PF02080 TrkA-C domain JRI60_RS42115 PF03600 Citrate transporter JRI60_RS42120 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JRI60_RS42120 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JRI60_RS42140 PF07963 Prokaryotic N-terminal methylation motif JRI60_RS42140 PF08334 Type II secretion system (T2SS), protein G JRI60_RS42145 PF00550 Phosphopantetheine attachment site JRI60_RS42145 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS42145 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS42145 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS42145 PF00698 Acyl transferase domain JRI60_RS42145 PF14765 Polyketide synthase dehydratase JRI60_RS42145 PF08659 KR domain JRI60_RS42155 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS42155 PF14765 Polyketide synthase dehydratase JRI60_RS42155 PF00550 Phosphopantetheine attachment site JRI60_RS42155 PF08659 KR domain JRI60_RS42155 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS42155 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS42165 PF00672 HAMP domain JRI60_RS42165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS42175 PF03169 OPT oligopeptide transporter protein JRI60_RS42180 PF00360 Phytochrome region JRI60_RS42180 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42180 PF08446 PAS fold JRI60_RS42180 PF01590 GAF domain JRI60_RS42185 PF00072 Response regulator receiver domain JRI60_RS42190 PF08448 PAS fold JRI60_RS42190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42190 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42190 PF13188 PAS domain JRI60_RS42190 PF00072 Response regulator receiver domain JRI60_RS42200 PF00155 Aminotransferase class I and II JRI60_RS42215 PF00155 Aminotransferase class I and II JRI60_RS42220 PF04055 Radical SAM superfamily JRI60_RS42220 PF06968 Biotin and Thiamin Synthesis associated domain JRI60_RS42225 PF04226 Transglycosylase associated protein JRI60_RS42230 PF18073 Rubredoxin metal binding domain JRI60_RS42280 PF00069 Protein kinase domain JRI60_RS42285 PF00553 Cellulose binding domain JRI60_RS42285 PF00041 Fibronectin type III domain JRI60_RS42285 PF01341 Glycosyl hydrolases family 6 JRI60_RS42290 PF02557 D-alanyl-D-alanine carboxypeptidase JRI60_RS42295 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_RS42295 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS42295 PF01799 [2Fe-2S] binding domain JRI60_RS42295 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JRI60_RS42300 PF01799 [2Fe-2S] binding domain JRI60_RS42300 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS42305 PF03450 CO dehydrogenase flavoprotein C-terminal domain JRI60_RS42305 PF00941 FAD binding domain in molybdopterin dehydrogenase JRI60_RS42310 PF04754 Putative transposase, YhgA-like JRI60_RS42315 PF00989 PAS fold JRI60_RS42315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42315 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42320 PF08446 PAS fold JRI60_RS42320 PF00360 Phytochrome region JRI60_RS42320 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42320 PF01590 GAF domain JRI60_RS42325 PF00072 Response regulator receiver domain JRI60_RS42330 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42330 PF07689 KaiB domain JRI60_RS42345 PF02954 Bacterial regulatory protein, Fis family JRI60_RS42345 PF00072 Response regulator receiver domain JRI60_RS42345 PF00158 Sigma-54 interaction domain JRI60_RS42370 PF00171 Aldehyde dehydrogenase family JRI60_RS42380 PF02590 Predicted SPOUT methyltransferase JRI60_RS42385 PF02080 TrkA-C domain JRI60_RS42385 PF03600 Citrate transporter JRI60_RS42395 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_RS42395 PF14760 Rnk N-terminus JRI60_RS42410 PF00072 Response regulator receiver domain JRI60_RS42410 PF13188 PAS domain JRI60_RS42410 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42410 PF08448 PAS fold JRI60_RS42415 PF00365 Phosphofructokinase JRI60_RS42425 PF00156 Phosphoribosyl transferase domain JRI60_RS42435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42435 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42440 PF00982 Glycosyltransferase family 20 JRI60_RS42450 PF00672 HAMP domain JRI60_RS42450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42450 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42465 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42465 PF16736 Single Cache-like JRI60_RS42465 PF00989 PAS fold JRI60_RS42470 PF02954 Bacterial regulatory protein, Fis family JRI60_RS42470 PF00072 Response regulator receiver domain JRI60_RS42470 PF00158 Sigma-54 interaction domain JRI60_RS42475 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42475 PF07689 KaiB domain JRI60_RS42475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42500 PF00743 Flavin-binding monooxygenase-like JRI60_RS42525 PF02675 S-adenosylmethionine decarboxylase JRI60_RS42545 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JRI60_RS42555 PF01894 Uncharacterised protein family UPF0047 JRI60_RS42560 PF02954 Bacterial regulatory protein, Fis family JRI60_RS42560 PF00072 Response regulator receiver domain JRI60_RS42560 PF00158 Sigma-54 interaction domain JRI60_RS42565 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42565 PF08446 PAS fold JRI60_RS42565 PF00360 Phytochrome region JRI60_RS42565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42565 PF01590 GAF domain JRI60_RS42580 PF08448 PAS fold JRI60_RS42580 PF08447 PAS fold JRI60_RS42580 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS42580 PF00563 EAL domain JRI60_RS42590 PF12867 DinB superfamily JRI60_RS42590 PF03781 Sulfatase-modifying factor enzyme 1 JRI60_RS42600 PF03793 PASTA domain JRI60_RS42600 PF00069 Protein kinase domain JRI60_RS42630 PF00202 Aminotransferase class-III JRI60_RS42635 PF00696 Amino acid kinase family JRI60_RS42645 PF00378 Enoyl-CoA hydratase/isomerase JRI60_RS42655 PF01883 Iron-sulfur cluster assembly protein JRI60_RS42660 PF01592 NifU-like N terminal domain JRI60_RS42665 PF00266 Aminotransferase class-V JRI60_RS42670 PF01458 Uncharacterized protein family (UPF0051) JRI60_RS42675 PF00005 ABC transporter JRI60_RS42680 PF01458 Uncharacterized protein family (UPF0051) JRI60_RS42685 PF02082 Transcriptional regulator JRI60_RS42700 PF13458 Periplasmic binding protein JRI60_RS42740 PF05736 OprF membrane domain JRI60_RS42740 PF00691 OmpA family JRI60_RS42755 PF04055 Radical SAM superfamily JRI60_RS42755 PF06969 HemN C-terminal domain JRI60_RS42765 PF00675 Insulinase (Peptidase family M16) JRI60_RS42765 PF05193 Peptidase M16 inactive domain JRI60_RS42820 PF04452 RNA methyltransferase JRI60_RS42830 PF06271 RDD family JRI60_RS42840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS42840 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS42870 PF01596 O-methyltransferase JRI60_RS42875 PF05962 HutD JRI60_RS42890 PF00072 Response regulator receiver domain JRI60_RS42890 PF02954 Bacterial regulatory protein, Fis family JRI60_RS42890 PF00158 Sigma-54 interaction domain JRI60_RS42905 PF03193 RsgA GTPase JRI60_RS42915 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JRI60_RS42915 PF06974 Protein of unknown function (DUF1298) JRI60_RS42940 PF01494 FAD binding domain JRI60_RS42970 PF01432 Peptidase family M3 JRI60_RS43005 PF01039 Carboxyl transferase domain JRI60_RS43015 PF02785 Biotin carboxylase C-terminal domain JRI60_RS43015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_RS43015 PF00289 Biotin carboxylase, N-terminal domain JRI60_RS43020 PF02436 Conserved carboxylase domain JRI60_RS43020 PF00682 HMGL-like JRI60_RS43020 PF00364 Biotin-requiring enzyme JRI60_RS43025 PF01642 Methylmalonyl-CoA mutase JRI60_RS43025 PF02310 B12 binding domain JRI60_RS43045 PF01925 Sulfite exporter TauE/SafE JRI60_RS43055 PF00226 DnaJ domain JRI60_RS43055 PF01556 DnaJ C terminal domain JRI60_RS43060 PF01985 CRS1 / YhbY (CRM) domain JRI60_RS43070 PF00156 Phosphoribosyl transferase domain JRI60_RS43075 PF03352 Methyladenine glycosylase JRI60_RS43075 PF13673 Acetyltransferase (GNAT) domain JRI60_RS43075 PF13302 Acetyltransferase (GNAT) domain JRI60_RS43075 PF00117 Glutamine amidotransferase class-I JRI60_RS43075 PF00958 GMP synthase C terminal domain JRI60_RS43095 PF00849 RNA pseudouridylate synthase JRI60_RS43105 PF02350 UDP-N-acetylglucosamine 2-epimerase JRI60_RS43110 PF02348 Cytidylyltransferase JRI60_RS43115 PF00664 ABC transporter transmembrane region JRI60_RS43115 PF00005 ABC transporter JRI60_RS43125 PF00117 Glutamine amidotransferase class-I JRI60_RS43125 PF06418 CTP synthase N-terminus JRI60_RS43130 PF00793 DAHP synthetase I family JRI60_RS43140 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS43140 PF00072 Response regulator receiver domain JRI60_RS43145 PF00011 Hsp20/alpha crystallin family JRI60_RS43170 PF03793 PASTA domain JRI60_RS43170 PF00069 Protein kinase domain JRI60_RS43175 PF00072 Response regulator receiver domain JRI60_RS43185 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JRI60_RS43185 PF10531 SLBB domain JRI60_RS43185 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JRI60_RS43190 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JRI60_RS43195 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JRI60_RS43200 PF00361 Proton-conducting membrane transporter JRI60_RS43200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JRI60_RS43205 PF00361 Proton-conducting membrane transporter JRI60_RS43210 PF00361 Proton-conducting membrane transporter JRI60_RS43215 PF00158 Sigma-54 interaction domain JRI60_RS43215 PF00072 Response regulator receiver domain JRI60_RS43215 PF02954 Bacterial regulatory protein, Fis family JRI60_RS43220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS43220 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS43225 PF09106 Elongation factor SelB, winged helix JRI60_RS43225 PF03144 Elongation factor Tu domain 2 JRI60_RS43225 PF00009 Elongation factor Tu GTP binding domain JRI60_RS43225 PF09107 Elongation factor SelB, winged helix JRI60_RS43230 PF00156 Phosphoribosyl transferase domain JRI60_RS43235 PF01430 Hsp33 protein JRI60_RS43245 PF00436 Single-strand binding protein family JRI60_RS43250 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JRI60_RS43260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JRI60_RS43265 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS43270 PF12911 N-terminal TM domain of oligopeptide transport permease C JRI60_RS43270 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS43275 PF13673 Acetyltransferase (GNAT) domain JRI60_RS43325 PF17932 Tetracyclin repressor-like, C-terminal domain JRI60_RS43325 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS43345 PF07238 PilZ domain JRI60_RS43345 PF00069 Protein kinase domain JRI60_RS43355 PF02580 D-Tyr-tRNA(Tyr) deacylase JRI60_RS43365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JRI60_RS43370 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_RS43370 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_RS43375 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JRI60_RS43375 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JRI60_RS43380 PF00672 HAMP domain JRI60_RS43380 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS43380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS43390 PF12833 Helix-turn-helix domain JRI60_RS43405 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JRI60_RS43410 PF00923 Transaldolase/Fructose-6-phosphate aldolase JRI60_RS43435 PF00561 alpha/beta hydrolase fold JRI60_RS43440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS43440 PF03466 LysR substrate binding domain JRI60_RS43465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS43465 PF18158 Adaptive response protein AidB N-terminal domain JRI60_RS43465 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS43480 PF00501 AMP-binding enzyme JRI60_RS43480 PF00668 Condensation domain JRI60_RS43480 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS43480 PF00550 Phosphopantetheine attachment site JRI60_RS43520 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_RS43520 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_RS43540 PF03793 PASTA domain JRI60_RS43540 PF00069 Protein kinase domain JRI60_RS43560 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS43560 PF00072 Response regulator receiver domain JRI60_RS43575 PF01638 HxlR-like helix-turn-helix JRI60_RS43590 PF00106 short chain dehydrogenase JRI60_RS43620 PF01055 Glycosyl hydrolases family 31 JRI60_RS43620 PF13802 Galactose mutarotase-like JRI60_RS43620 PF17137 Domain of unknown function (DUF5110) JRI60_RS43620 PF16338 Domain of unknown function (DUF4968) JRI60_RS43650 PF07508 Recombinase JRI60_RS43650 PF00239 Resolvase, N terminal domain JRI60_RS43650 PF13408 Recombinase zinc beta ribbon domain JRI60_RS43655 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JRI60_RS43655 PF00391 PEP-utilising enzyme, mobile domain JRI60_RS43685 PF07995 Glucose / Sorbosone dehydrogenase JRI60_RS43730 PF07681 DoxX JRI60_RS43735 PF03466 LysR substrate binding domain JRI60_RS43735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS43790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS43790 PF00072 Response regulator receiver domain JRI60_RS43790 PF09456 RcsC Alpha-Beta-Loop (ABL) JRI60_RS43790 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS43835 PF00067 Cytochrome P450 JRI60_RS43840 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS43850 PF00149 Calcineurin-like phosphoesterase JRI60_RS43855 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS43855 PF08361 MAATS-type transcriptional repressor, C-terminal region JRI60_RS43885 PF07859 alpha/beta hydrolase fold JRI60_RS43895 PF03466 LysR substrate binding domain JRI60_RS43895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS43940 PF01638 HxlR-like helix-turn-helix JRI60_RS43955 PF00072 Response regulator receiver domain JRI60_RS43955 PF13188 PAS domain JRI60_RS43955 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS43955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS43955 PF08448 PAS fold JRI60_RS43980 PF13439 Glycosyltransferase Family 4 JRI60_RS43990 PF00309 Sigma-54 factor, Activator interacting domain (AID) JRI60_RS43990 PF04963 Sigma-54 factor, core binding domain JRI60_RS43990 PF04552 Sigma-54, DNA binding domain JRI60_RS43995 PF12399 Branched-chain amino acid ATP-binding cassette transporter JRI60_RS43995 PF00005 ABC transporter JRI60_RS44010 PF03279 Bacterial lipid A biosynthesis acyltransferase JRI60_RS44015 PF04996 Succinylarginine dihydrolase JRI60_RS44050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JRI60_RS44050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JRI60_RS44050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JRI60_RS44075 PF00953 Glycosyl transferase family 4 JRI60_RS44085 PF00483 Nucleotidyl transferase JRI60_RS44090 PF16363 GDP-mannose 4,6 dehydratase JRI60_RS44095 PF00082 Subtilase family JRI60_RS44095 PF05922 Peptidase inhibitor I9 JRI60_RS44110 PF01373 Glycosyl hydrolase family 14 JRI60_RS44110 PF03423 Carbohydrate binding domain (family 25) JRI60_RS44110 PF00128 Alpha amylase, catalytic domain JRI60_RS44120 PF00067 Cytochrome P450 JRI60_RS44155 PF13439 Glycosyltransferase Family 4 JRI60_RS44165 PF00534 Glycosyl transferases group 1 JRI60_RS44165 PF13439 Glycosyltransferase Family 4 JRI60_RS44180 PF13614 AAA domain JRI60_RS44185 PF00398 Ribosomal RNA adenine dimethylase JRI60_RS44190 PF00543 Nitrogen regulatory protein P-II JRI60_RS44205 PF01757 Acyltransferase family JRI60_RS44210 PF03062 MBOAT, membrane-bound O-acyltransferase family JRI60_RS44225 PF17757 UvrB interaction domain JRI60_RS44225 PF02559 CarD-like/TRCF domain JRI60_RS44225 PF00270 DEAD/DEAH box helicase JRI60_RS44225 PF00271 Helicase conserved C-terminal domain JRI60_RS44225 PF03461 TRCF domain JRI60_RS44240 PF00691 OmpA family JRI60_RS44240 PF13677 Membrane MotB of proton-channel complex MotA/MotB JRI60_RS44245 PF00990 Diguanylate cyclase, GGDEF domain JRI60_RS44245 PF00072 Response regulator receiver domain JRI60_RS44255 PF01546 Peptidase family M20/M25/M40 JRI60_RS44255 PF07687 Peptidase dimerisation domain JRI60_RS44260 PF02630 SCO1/SenC JRI60_RS44300 PF00571 CBS domain JRI60_RS44310 PF02013 Cellulose or protein binding domain JRI60_RS44310 PF02015 Glycosyl hydrolase family 45 JRI60_RS44310 PF00553 Cellulose binding domain JRI60_RS44360 PF04238 Protein of unknown function (DUF420) JRI60_RS44365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS44365 PF08448 PAS fold JRI60_RS44365 PF00672 HAMP domain JRI60_RS44365 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS44365 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_RS44370 PF00072 Response regulator receiver domain JRI60_RS44375 PF08446 PAS fold JRI60_RS44375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS44375 PF01590 GAF domain JRI60_RS44375 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS44375 PF00360 Phytochrome region JRI60_RS44385 PF00082 Subtilase family JRI60_RS44385 PF04151 Bacterial pre-peptidase C-terminal domain JRI60_RS44390 PF00005 ABC transporter JRI60_RS44390 PF17912 MalK OB fold domain JRI60_RS44395 PF00005 ABC transporter JRI60_RS44395 PF17912 MalK OB fold domain JRI60_RS44400 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS44405 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS44450 PF00271 Helicase conserved C-terminal domain JRI60_RS44450 PF08494 DEAD/H associated JRI60_RS44450 PF00270 DEAD/DEAH box helicase JRI60_RS44465 PF00107 Zinc-binding dehydrogenase JRI60_RS44465 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS44465 PF13823 Alcohol dehydrogenase GroES-associated JRI60_RS44475 PF00355 Rieske [2Fe-2S] domain JRI60_RS44480 PF03055 Retinal pigment epithelial membrane protein JRI60_RS44490 PF04945 YHS domain JRI60_RS44500 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS44500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JRI60_RS44505 PF12706 Beta-lactamase superfamily domain JRI60_RS44525 PF00106 short chain dehydrogenase JRI60_RS44530 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JRI60_RS44530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_RS44530 PF00034 Cytochrome c JRI60_RS44560 PF12320 Type 5 capsule protein repressor C-terminal domain JRI60_RS44560 PF00149 Calcineurin-like phosphoesterase JRI60_RS44565 PF02567 Phenazine biosynthesis-like protein JRI60_RS44585 PF00149 Calcineurin-like phosphoesterase JRI60_RS44595 PF00144 Beta-lactamase JRI60_RS44610 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal JRI60_RS44610 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal JRI60_RS44615 PF00135 Carboxylesterase family JRI60_RS44630 PF00005 ABC transporter JRI60_RS44635 PF12679 ABC-2 family transporter protein JRI60_RS44645 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JRI60_RS44645 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JRI60_RS44650 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JRI60_RS44655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JRI60_RS44655 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JRI60_RS44665 PF00111 2Fe-2S iron-sulfur cluster binding domain JRI60_RS44665 PF01799 [2Fe-2S] binding domain JRI60_RS44670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JRI60_RS44670 PF00034 Cytochrome c JRI60_RS44670 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JRI60_RS44675 PF03641 Possible lysine decarboxylase JRI60_RS44680 PF00860 Permease family JRI60_RS44685 PF00723 Glycosyl hydrolases family 15 JRI60_RS44685 PF09137 Glucodextranase, domain N JRI60_RS44695 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS44695 PF00501 AMP-binding enzyme JRI60_RS44715 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS44715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS44720 PF00989 PAS fold JRI60_RS44720 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS44720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS44725 PF01709 Transcriptional regulator JRI60_RS44730 PF02335 Cytochrome c552 JRI60_RS44735 PF03264 NapC/NirT cytochrome c family, N-terminal region JRI60_RS44745 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS44745 PF00107 Zinc-binding dehydrogenase JRI60_RS44750 PF00756 Putative esterase JRI60_RS44775 PF02557 D-alanyl-D-alanine carboxypeptidase JRI60_RS44780 PF00722 Glycosyl hydrolases family 16 JRI60_RS44795 PF00069 Protein kinase domain JRI60_RS44795 PF07238 PilZ domain JRI60_RS44805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS44805 PF08447 PAS fold JRI60_RS44805 PF08448 PAS fold JRI60_RS44810 PF00069 Protein kinase domain JRI60_RS44810 PF03793 PASTA domain JRI60_RS44825 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JRI60_RS44825 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JRI60_RS44860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JRI60_RS44860 PF00205 Thiamine pyrophosphate enzyme, central domain JRI60_RS44860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JRI60_RS44865 PF00854 POT family JRI60_RS44870 PF02310 B12 binding domain JRI60_RS44870 PF02607 B12 binding domain JRI60_RS44870 PF13411 MerR HTH family regulatory protein JRI60_RS44875 PF02310 B12 binding domain JRI60_RS44875 PF13411 MerR HTH family regulatory protein JRI60_RS44905 PF01593 Flavin containing amine oxidoreductase JRI60_RS44910 PF00368 Hydroxymethylglutaryl-coenzyme A reductase JRI60_RS44920 PF01593 Flavin containing amine oxidoreductase JRI60_RS44925 PF00348 Polyprenyl synthetase JRI60_RS44935 PF08338 Domain of unknown function (DUF1731) JRI60_RS44935 PF01370 NAD dependent epimerase/dehydratase family JRI60_RS44940 PF00149 Calcineurin-like phosphoesterase JRI60_RS44945 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS44945 PF17932 Tetracyclin repressor-like, C-terminal domain JRI60_RS44950 PF01979 Amidohydrolase family JRI60_RS44965 PF00069 Protein kinase domain JRI60_RS44965 PF03793 PASTA domain JRI60_RS44990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS44990 PF02743 Cache domain JRI60_RS44990 PF00672 HAMP domain JRI60_RS45005 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS45020 PF10459 Peptidase S46 JRI60_RS45045 PF00210 Ferritin-like domain JRI60_RS45050 PF00106 short chain dehydrogenase JRI60_RS45055 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS45055 PF00043 Glutathione S-transferase, C-terminal domain JRI60_RS45060 PF02547 Queuosine biosynthesis protein JRI60_RS45065 PF00719 Inorganic pyrophosphatase JRI60_RS45080 PF00012 Hsp70 protein JRI60_RS45095 PF01327 Polypeptide deformylase JRI60_RS45110 PF13302 Acetyltransferase (GNAT) domain JRI60_RS45110 PF00027 Cyclic nucleotide-binding domain JRI60_RS45120 PF00156 Phosphoribosyl transferase domain JRI60_RS45120 PF05139 Erythromycin esterase JRI60_RS45125 PF12697 Alpha/beta hydrolase family JRI60_RS45150 PF17284 Spermidine synthase tetramerisation domain JRI60_RS45170 PF00034 Cytochrome c JRI60_RS45170 PF03150 Di-haem cytochrome c peroxidase JRI60_RS45190 PF01037 Lrp/AsnC ligand binding domain JRI60_RS45195 PF00155 Aminotransferase class I and II JRI60_RS45230 PF03466 LysR substrate binding domain JRI60_RS45230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS45245 PF00067 Cytochrome P450 JRI60_RS45255 PF02557 D-alanyl-D-alanine carboxypeptidase JRI60_RS45265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_RS45270 PF00873 AcrB/AcrD/AcrF family JRI60_RS45280 PF00155 Aminotransferase class I and II JRI60_RS45300 PF01136 Peptidase family U32 JRI60_RS45300 PF16325 Peptidase family U32 C-terminal domain JRI60_RS45310 PF01817 Chorismate mutase type II JRI60_RS45310 PF02153 Prephenate dehydrogenase JRI60_RS45320 PF00144 Beta-lactamase JRI60_RS45325 PF02734 DAK2 domain JRI60_RS45325 PF02733 Dak1 domain JRI60_RS45330 PF00672 HAMP domain JRI60_RS45330 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS45330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS45335 PF02163 Peptidase family M50 JRI60_RS45390 PF02585 GlcNAc-PI de-N-acetylase JRI60_RS45420 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS45420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS45420 PF00672 HAMP domain JRI60_RS45425 PF00072 Response regulator receiver domain JRI60_RS45430 PF01590 GAF domain JRI60_RS45430 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS45430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS45430 PF00360 Phytochrome region JRI60_RS45430 PF08446 PAS fold JRI60_RS45440 PF00593 TonB dependent receptor JRI60_RS45440 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS45450 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS45455 PF12806 Acetyl-CoA dehydrogenase C-terminal like JRI60_RS45455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS45455 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS45455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS45465 PF07720 Tetratricopeptide repeat JRI60_RS45465 PF01435 Peptidase family M48 JRI60_RS45475 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS45475 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS45475 PF03413 Peptidase propeptide and YPEB domain JRI60_RS45475 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS45480 PF07759 Protein of unknown function (DUF1615) JRI60_RS45495 PF05193 Peptidase M16 inactive domain JRI60_RS45495 PF00675 Insulinase (Peptidase family M16) JRI60_RS45500 PF01494 FAD binding domain JRI60_RS45540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS45540 PF03466 LysR substrate binding domain JRI60_RS45545 PF07969 Amidohydrolase family JRI60_RS45555 PF00534 Glycosyl transferases group 1 JRI60_RS45565 PF16200 C-terminal region of band_7 JRI60_RS45565 PF01145 SPFH domain / Band 7 family JRI60_RS45575 PF13411 MerR HTH family regulatory protein JRI60_RS45605 PF12833 Helix-turn-helix domain JRI60_RS45605 PF02311 AraC-like ligand binding domain JRI60_RS45620 PF00521 DNA gyrase/topoisomerase IV, subunit A JRI60_RS45620 PF03989 DNA gyrase C-terminal domain, beta-propeller JRI60_RS45640 PF03167 Uracil DNA glycosylase superfamily JRI60_RS45650 PF00437 Type II/IV secretion system protein JRI60_RS45675 PF00069 Protein kinase domain JRI60_RS45675 PF07238 PilZ domain JRI60_RS45695 PF04348 LppC putative lipoprotein JRI60_RS45710 PF00891 O-methyltransferase domain JRI60_RS45710 PF16864 Dimerisation domain JRI60_RS45715 PF00266 Aminotransferase class-V JRI60_RS45725 PF00069 Protein kinase domain JRI60_RS45730 PF02954 Bacterial regulatory protein, Fis family JRI60_RS45730 PF00072 Response regulator receiver domain JRI60_RS45730 PF00158 Sigma-54 interaction domain JRI60_RS45740 PF03413 Peptidase propeptide and YPEB domain JRI60_RS45740 PF07504 Fungalysin/Thermolysin Propeptide Motif JRI60_RS45740 PF01447 Thermolysin metallopeptidase, catalytic domain JRI60_RS45740 PF02868 Thermolysin metallopeptidase, alpha-helical domain JRI60_RS45745 PF00704 Glycosyl hydrolases family 18 JRI60_RS45745 PF00041 Fibronectin type III domain JRI60_RS45750 PF08546 Ketopantoate reductase PanE/ApbA C terminal JRI60_RS45750 PF02558 Ketopantoate reductase PanE/ApbA JRI60_RS45755 PF01915 Glycosyl hydrolase family 3 C-terminal domain JRI60_RS45755 PF00933 Glycosyl hydrolase family 3 N terminal domain JRI60_RS45765 PF00437 Type II/IV secretion system protein JRI60_RS45770 PF00684 DnaJ central domain JRI60_RS45770 PF00226 DnaJ domain JRI60_RS45770 PF01556 DnaJ C terminal domain JRI60_RS45780 PF00005 ABC transporter JRI60_RS45780 PF00664 ABC transporter transmembrane region JRI60_RS45810 PF01494 FAD binding domain JRI60_RS45815 PF18337 RapA N-terminal Tudor like domain JRI60_RS45815 PF00176 SNF2 family N-terminal domain JRI60_RS45815 PF18339 RapA N-terminal Tudor like domain 1 JRI60_RS45815 PF12137 RNA polymerase recycling family C-terminal JRI60_RS45815 PF00271 Helicase conserved C-terminal domain JRI60_RS45820 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS45820 PF18698 Histidine kinase sensor domain JRI60_RS45820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS45820 PF00672 HAMP domain JRI60_RS45835 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS45835 PF00672 HAMP domain JRI60_RS45835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS45835 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS45835 PF01627 Hpt domain JRI60_RS45835 PF00072 Response regulator receiver domain JRI60_RS45840 PF00072 Response regulator receiver domain JRI60_RS45845 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS45845 PF00072 Response regulator receiver domain JRI60_RS45865 PF00069 Protein kinase domain JRI60_RS45900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS45900 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS45905 PF00072 Response regulator receiver domain JRI60_RS45905 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS45910 PF03109 ABC1 family JRI60_RS45915 PF07238 PilZ domain JRI60_RS45915 PF00069 Protein kinase domain JRI60_RS45925 PF02667 Short chain fatty acid transporter JRI60_RS45935 PF03030 Inorganic H+ pyrophosphatase JRI60_RS45950 PF00313 'Cold-shock' DNA-binding domain JRI60_RS45970 PF00873 AcrB/AcrD/AcrF family JRI60_RS45980 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS45990 PF00753 Metallo-beta-lactamase superfamily JRI60_RS45990 PF12706 Beta-lactamase superfamily domain JRI60_RS46015 PF00561 alpha/beta hydrolase fold JRI60_RS46050 PF07969 Amidohydrolase family JRI60_RS46125 PF02566 OsmC-like protein JRI60_RS46135 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS46135 PF17862 AAA+ lid domain JRI60_RS46135 PF01434 Peptidase family M41 JRI60_RS46135 PF06480 FtsH Extracellular JRI60_RS46150 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS46150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46150 PF00672 HAMP domain JRI60_RS46150 PF00989 PAS fold JRI60_RS46160 PF13505 Outer membrane protein beta-barrel domain JRI60_RS46160 PF00691 OmpA family JRI60_RS46165 PF00672 HAMP domain JRI60_RS46165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46165 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS46185 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS46185 PF00107 Zinc-binding dehydrogenase JRI60_RS46190 PF03466 LysR substrate binding domain JRI60_RS46190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS46210 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS46210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46215 PF00248 Aldo/keto reductase family JRI60_RS46220 PF05225 helix-turn-helix, Psq domain JRI60_RS46220 PF02810 SEC-C motif JRI60_RS46245 PF00005 ABC transporter JRI60_RS46250 PF03073 TspO/MBR family JRI60_RS46270 PF13614 AAA domain JRI60_RS46280 PF01381 Helix-turn-helix JRI60_RS46290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46290 PF08447 PAS fold JRI60_RS46290 PF08448 PAS fold JRI60_RS46300 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS46300 PF17925 Tetracyclin repressor-like, C-terminal domain JRI60_RS46305 PF00171 Aldehyde dehydrogenase family JRI60_RS46325 PF07238 PilZ domain JRI60_RS46325 PF00069 Protein kinase domain JRI60_RS46335 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal JRI60_RS46335 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal JRI60_RS46345 PF00132 Bacterial transferase hexapeptide (six repeats) JRI60_RS46365 PF01569 PAP2 superfamily JRI60_RS46385 PF00171 Aldehyde dehydrogenase family JRI60_RS46395 PF02954 Bacterial regulatory protein, Fis family JRI60_RS46395 PF00072 Response regulator receiver domain JRI60_RS46395 PF00158 Sigma-54 interaction domain JRI60_RS46405 PF02628 Cytochrome oxidase assembly protein JRI60_RS46405 PF01040 UbiA prenyltransferase family JRI60_RS46415 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS46415 PF13191 AAA ATPase domain JRI60_RS46445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS46450 PF02896 PEP-utilising enzyme, TIM barrel domain JRI60_RS46450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JRI60_RS46450 PF00391 PEP-utilising enzyme, mobile domain JRI60_RS46470 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS46475 PF00571 CBS domain JRI60_RS46475 PF00005 ABC transporter JRI60_RS46490 PF00565 Staphylococcal nuclease homologue JRI60_RS46505 PF00756 Putative esterase JRI60_RS46515 PF02142 MGS-like domain JRI60_RS46515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JRI60_RS46515 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JRI60_RS46525 PF13439 Glycosyltransferase Family 4 JRI60_RS46525 PF00534 Glycosyl transferases group 1 JRI60_RS46530 PF12848 ABC transporter JRI60_RS46530 PF00005 ABC transporter JRI60_RS46540 PF00005 ABC transporter JRI60_RS46545 PF01061 ABC-2 type transporter JRI60_RS46550 PF00069 Protein kinase domain JRI60_RS46555 PF11954 Domain of unknown function (DUF3471) JRI60_RS46555 PF00144 Beta-lactamase JRI60_RS46565 PF00860 Permease family JRI60_RS46570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46570 PF13426 PAS domain JRI60_RS46570 PF00072 Response regulator receiver domain JRI60_RS46585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_RS46585 PF00128 Alpha amylase, catalytic domain JRI60_RS46585 PF11941 Domain of unknown function (DUF3459) JRI60_RS46590 PF07724 AAA domain (Cdc48 subfamily) JRI60_RS46590 PF06689 ClpX C4-type zinc finger JRI60_RS46590 PF10431 C-terminal, D2-small domain, of ClpB protein JRI60_RS46640 PF13091 PLD-like domain JRI60_RS46640 PF13396 Phospholipase_D-nuclease N-terminal JRI60_RS46650 PF01751 Toprim domain JRI60_RS46650 PF01131 DNA topoisomerase JRI60_RS46660 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JRI60_RS46670 PF00155 Aminotransferase class I and II JRI60_RS46695 PF01590 GAF domain JRI60_RS46695 PF00360 Phytochrome region JRI60_RS46695 PF08446 PAS fold JRI60_RS46695 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS46695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46715 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS46715 PF00593 TonB dependent receptor JRI60_RS46720 PF13640 2OG-Fe(II) oxygenase superfamily JRI60_RS46720 PF18331 PKHD-type hydroxylase C-terminal domain JRI60_RS46730 PF00672 HAMP domain JRI60_RS46730 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS46730 PF00989 PAS fold JRI60_RS46730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46730 PF18698 Histidine kinase sensor domain JRI60_RS46735 PF00873 AcrB/AcrD/AcrF family JRI60_RS46740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JRI60_RS46745 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS46745 PF00072 Response regulator receiver domain JRI60_RS46750 PF11808 Phosphate regulon sensor protein PhoR JRI60_RS46750 PF00989 PAS fold JRI60_RS46750 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS46750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46770 PF13416 Bacterial extracellular solute-binding protein JRI60_RS46775 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS46775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46775 PF00989 PAS fold JRI60_RS46780 PF08546 Ketopantoate reductase PanE/ApbA C terminal JRI60_RS46780 PF02558 Ketopantoate reductase PanE/ApbA JRI60_RS46785 PF00501 AMP-binding enzyme JRI60_RS46785 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS46800 PF00069 Protein kinase domain JRI60_RS46805 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS46805 PF00072 Response regulator receiver domain JRI60_RS46820 PF00593 TonB dependent receptor JRI60_RS46820 PF07715 TonB-dependent Receptor Plug Domain JRI60_RS46825 PF00069 Protein kinase domain JRI60_RS46830 PF00005 ABC transporter JRI60_RS46830 PF00664 ABC transporter transmembrane region JRI60_RS46835 PF00664 ABC transporter transmembrane region JRI60_RS46835 PF00005 ABC transporter JRI60_RS46850 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain JRI60_RS46850 PF09297 NADH pyrophosphatase zinc ribbon domain JRI60_RS46850 PF00293 NUDIX domain JRI60_RS46855 PF04055 Radical SAM superfamily JRI60_RS46875 PF00005 ABC transporter JRI60_RS46880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46880 PF08447 PAS fold JRI60_RS46880 PF08448 PAS fold JRI60_RS46885 PF01541 GIY-YIG catalytic domain JRI60_RS46905 PF05698 Bacterial trigger factor protein (TF) C-terminus JRI60_RS46910 PF00639 PPIC-type PPIASE domain JRI60_RS46910 PF09312 SurA N-terminal domain JRI60_RS46915 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JRI60_RS46930 PF06745 KaiC JRI60_RS46935 PF00072 Response regulator receiver domain JRI60_RS46935 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS46940 PF03705 CheR methyltransferase, all-alpha domain JRI60_RS46940 PF08448 PAS fold JRI60_RS46940 PF01339 CheB methylesterase JRI60_RS46940 PF01739 CheR methyltransferase, SAM binding domain JRI60_RS46945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS46945 PF00072 Response regulator receiver domain JRI60_RS46945 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS46945 PF13188 PAS domain JRI60_RS46945 PF08448 PAS fold JRI60_RS46970 PF01674 Lipase (class 2) JRI60_RS46980 PF01494 FAD binding domain JRI60_RS46985 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS46985 PF08361 MAATS-type transcriptional repressor, C-terminal region JRI60_RS46995 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS47025 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS47030 PF00005 ABC transporter JRI60_RS47035 PF00723 Glycosyl hydrolases family 15 JRI60_RS47050 PF14765 Polyketide synthase dehydratase JRI60_RS47050 PF08659 KR domain JRI60_RS47050 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS47050 PF00698 Acyl transferase domain JRI60_RS47050 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS47050 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS47050 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS47050 PF00550 Phosphopantetheine attachment site JRI60_RS47055 PF00266 Aminotransferase class-V JRI60_RS47090 PF09587 Bacterial capsule synthesis protein PGA_cap JRI60_RS47100 PF00255 Glutathione peroxidase JRI60_RS47115 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS47115 PF13977 BetI-type transcriptional repressor, C-terminal JRI60_RS47130 PF01425 Amidase JRI60_RS47145 PF00069 Protein kinase domain JRI60_RS47145 PF03793 PASTA domain JRI60_RS47160 PF00043 Glutathione S-transferase, C-terminal domain JRI60_RS47160 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS47165 PF00535 Glycosyl transferase family 2 JRI60_RS47170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS47170 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS47170 PF00672 HAMP domain JRI60_RS47170 PF00989 PAS fold JRI60_RS47180 PF18029 Glyoxalase-like domain JRI60_RS47180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS47205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS47220 PF00561 alpha/beta hydrolase fold JRI60_RS47220 PF08386 TAP-like protein JRI60_RS47235 PF00069 Protein kinase domain JRI60_RS47240 PF00158 Sigma-54 interaction domain JRI60_RS47240 PF00072 Response regulator receiver domain JRI60_RS47240 PF02954 Bacterial regulatory protein, Fis family JRI60_RS47245 PF00989 PAS fold JRI60_RS47245 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS47245 PF00672 HAMP domain JRI60_RS47245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS47270 PF03793 PASTA domain JRI60_RS47270 PF00069 Protein kinase domain JRI60_RS47275 PF00072 Response regulator receiver domain JRI60_RS47280 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS47280 PF00072 Response regulator receiver domain JRI60_RS47285 PF00342 Phosphoglucose isomerase JRI60_RS47295 PF00067 Cytochrome P450 JRI60_RS47305 PF01593 Flavin containing amine oxidoreductase JRI60_RS47315 PF00069 Protein kinase domain JRI60_RS47325 PF01494 FAD binding domain JRI60_RS47330 PF00266 Aminotransferase class-V JRI60_RS47340 PF06052 3-hydroxyanthranilic acid dioxygenase JRI60_RS47345 PF01042 Endoribonuclease L-PSP JRI60_RS47350 PF00171 Aldehyde dehydrogenase family JRI60_RS47365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS47365 PF17200 Single Cache domain 2 JRI60_RS47365 PF00672 HAMP domain JRI60_RS47385 PF01557 Fumarylacetoacetate (FAA) hydrolase family JRI60_RS47415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS47415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS47415 PF00672 HAMP domain JRI60_RS47415 PF00072 Response regulator receiver domain JRI60_RS47415 PF01627 Hpt domain JRI60_RS47415 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS47420 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS47420 PF01627 Hpt domain JRI60_RS47420 PF00072 Response regulator receiver domain JRI60_RS47420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS47420 PF00672 HAMP domain JRI60_RS47420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS47460 PF00082 Subtilase family JRI60_RS47475 PF00067 Cytochrome P450 JRI60_RS47500 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JRI60_RS47500 PF01409 tRNA synthetases class II core domain (F) JRI60_RS47545 PF00171 Aldehyde dehydrogenase family JRI60_RS47565 PF00072 Response regulator receiver domain JRI60_RS47565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS47565 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS47565 PF09308 LuxQ, periplasmic JRI60_RS47570 PF03793 PASTA domain JRI60_RS47570 PF00069 Protein kinase domain JRI60_RS47600 PF00149 Calcineurin-like phosphoesterase JRI60_RS47615 PF00355 Rieske [2Fe-2S] domain JRI60_RS47630 PF13847 Methyltransferase domain JRI60_RS47635 PF00285 Citrate synthase, C-terminal domain JRI60_RS47650 PF09559 Cas6 Crispr JRI60_RS47665 PF03787 RAMP superfamily JRI60_RS47695 PF00069 Protein kinase domain JRI60_RS47695 PF07238 PilZ domain JRI60_RS47705 PF00069 Protein kinase domain JRI60_RS47705 PF03793 PASTA domain JRI60_RS47715 PF06071 Protein of unknown function (DUF933) JRI60_RS47715 PF01926 50S ribosome-binding GTPase JRI60_RS47720 PF00430 ATP synthase B/B' CF(0) JRI60_RS47725 PF00137 ATP synthase subunit C JRI60_RS47730 PF00119 ATP synthase A chain JRI60_RS47755 PF01161 Phosphatidylethanolamine-binding protein JRI60_RS47760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS47760 PF00989 PAS fold JRI60_RS47760 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS47790 PF04542 Sigma-70 region 2 JRI60_RS47790 PF04545 Sigma-70, region 4 JRI60_RS47805 PF00067 Cytochrome P450 JRI60_RS47810 PF00005 ABC transporter JRI60_RS47815 PF00528 Binding-protein-dependent transport system inner membrane component JRI60_RS47835 PF00067 Cytochrome P450 JRI60_RS47870 PF04072 Leucine carboxyl methyltransferase JRI60_RS47875 PF07470 Glycosyl Hydrolase Family 88 JRI60_RS47890 PF00672 HAMP domain JRI60_RS47890 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS47890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS47895 PF01627 Hpt domain JRI60_RS47895 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS47895 PF00072 Response regulator receiver domain JRI60_RS47905 PF00144 Beta-lactamase JRI60_RS47910 PF00891 O-methyltransferase domain JRI60_RS47930 PF01022 Bacterial regulatory protein, arsR family JRI60_RS47935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JRI60_RS47945 PF13167 GTP-binding GTPase N-terminal JRI60_RS47945 PF16360 GTP-binding GTPase Middle Region JRI60_RS47945 PF01926 50S ribosome-binding GTPase JRI60_RS47975 PF00305 Lipoxygenase JRI60_RS48060 PF00672 HAMP domain JRI60_RS48060 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS48060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS48105 PF01965 DJ-1/PfpI family JRI60_RS48115 PF03466 LysR substrate binding domain JRI60_RS48115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS48140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS48140 PF03466 LysR substrate binding domain JRI60_RS48155 PF13462 Thioredoxin JRI60_RS48155 PF00069 Protein kinase domain JRI60_RS48165 PF00069 Protein kinase domain JRI60_RS48165 PF07238 PilZ domain JRI60_RS48185 PF00158 Sigma-54 interaction domain JRI60_RS48185 PF00072 Response regulator receiver domain JRI60_RS48190 PF12146 Serine aminopeptidase, S33 JRI60_RS48195 PF04493 Endonuclease V JRI60_RS48205 PF00069 Protein kinase domain JRI60_RS48220 PF01568 Molydopterin dinucleotide binding domain JRI60_RS48220 PF00384 Molybdopterin oxidoreductase JRI60_RS48225 PF07690 Major Facilitator Superfamily JRI60_RS48235 PF03577 Peptidase family C69 JRI60_RS48240 PF00533 BRCA1 C Terminus (BRCT) domain JRI60_RS48240 PF01653 NAD-dependent DNA ligase adenylation domain JRI60_RS48240 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JRI60_RS48240 PF03120 NAD-dependent DNA ligase OB-fold domain JRI60_RS48240 PF12826 Helix-hairpin-helix motif JRI60_RS48255 PF05683 Fumarase C-terminus JRI60_RS48255 PF05681 Fumarate hydratase (Fumerase) JRI60_RS48265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS48265 PF09308 LuxQ, periplasmic JRI60_RS48265 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS48265 PF00072 Response regulator receiver domain JRI60_RS48270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS48270 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS48280 PF13581 Histidine kinase-like ATPase domain JRI60_RS48285 PF01740 STAS domain JRI60_RS48290 PF08678 Rsbr N terminal JRI60_RS48290 PF01740 STAS domain JRI60_RS48295 PF00069 Protein kinase domain JRI60_RS48300 PF00202 Aminotransferase class-III JRI60_RS48355 PF01790 Prolipoprotein diacylglyceryl transferase JRI60_RS48360 PF01252 Signal peptidase (SPase) II JRI60_RS48365 PF01252 Signal peptidase (SPase) II JRI60_RS48385 PF06827 Zinc finger found in FPG and IleRS JRI60_RS48385 PF00133 tRNA synthetases class I (I, L, M and V) JRI60_RS48385 PF08264 Anticodon-binding domain of tRNA JRI60_RS48420 PF02954 Bacterial regulatory protein, Fis family JRI60_RS48420 PF00158 Sigma-54 interaction domain JRI60_RS48420 PF00072 Response regulator receiver domain JRI60_RS48425 PF08443 RimK-like ATP-grasp domain JRI60_RS48425 PF18030 RimK PreATP-grasp domain JRI60_RS48460 PF07676 WD40-like Beta Propeller Repeat JRI60_RS48480 PF00672 HAMP domain JRI60_RS48480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS48480 PF18698 Histidine kinase sensor domain JRI60_RS48480 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS48485 PF04070 Domain of unknown function (DUF378) JRI60_RS48490 PF07676 WD40-like Beta Propeller Repeat JRI60_RS48490 PF00326 Prolyl oligopeptidase family JRI60_RS48515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JRI60_RS48515 PF00476 DNA polymerase family A JRI60_RS48515 PF01367 5'-3' exonuclease, C-terminal SAM fold JRI60_RS48530 PF01661 Macro domain JRI60_RS48535 PF13302 Acetyltransferase (GNAT) domain JRI60_RS48540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS48540 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS48545 PF01204 Trehalase JRI60_RS48565 PF06470 SMC proteins Flexible Hinge Domain JRI60_RS48565 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS48590 PF00202 Aminotransferase class-III JRI60_RS48600 PF13367 PrsW family intramembrane metalloprotease JRI60_RS48635 PF00149 Calcineurin-like phosphoesterase JRI60_RS48635 PF10518 TAT (twin-arginine translocation) pathway signal sequence JRI60_RS48650 PF04055 Radical SAM superfamily JRI60_RS48655 PF00072 Response regulator receiver domain JRI60_RS48655 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS48660 PF13180 PDZ domain JRI60_RS48665 PF13180 PDZ domain JRI60_RS48690 PF02558 Ketopantoate reductase PanE/ApbA JRI60_RS48690 PF08546 Ketopantoate reductase PanE/ApbA C terminal JRI60_RS48700 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS48700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS48700 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_RS48705 PF00027 Cyclic nucleotide-binding domain JRI60_RS48705 PF13545 Crp-like helix-turn-helix domain JRI60_RS48720 PF00069 Protein kinase domain JRI60_RS48725 PF00012 Hsp70 protein JRI60_RS48745 PF00593 TonB dependent receptor JRI60_RS48770 PF08281 Sigma-70, region 4 JRI60_RS48770 PF04542 Sigma-70 region 2 JRI60_RS48775 PF12894 Anaphase-promoting complex subunit 4 WD40 domain JRI60_RS48775 PF00400 WD domain, G-beta repeat JRI60_RS48800 PF01323 DSBA-like thioredoxin domain JRI60_RS48815 PF00158 Sigma-54 interaction domain JRI60_RS48815 PF02954 Bacterial regulatory protein, Fis family JRI60_RS48815 PF00072 Response regulator receiver domain JRI60_RS48825 PF00801 PKD domain JRI60_RS48825 PF05547 Immune inhibitor A peptidase M6 JRI60_RS48840 PF03793 PASTA domain JRI60_RS48840 PF00069 Protein kinase domain JRI60_RS48850 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JRI60_RS48875 PF00171 Aldehyde dehydrogenase family JRI60_RS48890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS48915 PF00535 Glycosyl transferase family 2 JRI60_RS48960 PF18417 L-lysine epsilon oxidase C-terminal domain JRI60_RS48960 PF17990 L-Lysine epsilon oxidase N-terminal JRI60_RS49010 PF07237 Protein of unknown function (DUF1428) JRI60_RS49015 PF07690 Major Facilitator Superfamily JRI60_RS49035 PF04408 Helicase associated domain (HA2) JRI60_RS49035 PF00270 DEAD/DEAH box helicase JRI60_RS49035 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JRI60_RS49035 PF00271 Helicase conserved C-terminal domain JRI60_RS49035 PF11898 Domain of unknown function (DUF3418) JRI60_RS49060 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS49060 PF06470 SMC proteins Flexible Hinge Domain JRI60_RS49090 PF01872 RibD C-terminal domain JRI60_RS49115 PF07995 Glucose / Sorbosone dehydrogenase JRI60_RS49125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS49125 PF03466 LysR substrate binding domain JRI60_RS49135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS49135 PF03466 LysR substrate binding domain JRI60_RS49175 PF00578 AhpC/TSA family JRI60_RS49180 PF11412 Disulphide bond corrector protein DsbC JRI60_RS49180 PF02683 Cytochrome C biogenesis protein transmembrane region JRI60_RS49210 PF02754 Cysteine-rich domain JRI60_RS49210 PF13183 4Fe-4S dicluster domain JRI60_RS49215 PF07676 WD40-like Beta Propeller Repeat JRI60_RS49215 PF04052 TolB amino-terminal domain JRI60_RS49230 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS49230 PF00072 Response regulator receiver domain JRI60_RS49230 PF01627 Hpt domain JRI60_RS49230 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS49230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS49230 PF00672 HAMP domain JRI60_RS49235 PF01509 TruB family pseudouridylate synthase (N terminal domain) JRI60_RS49240 PF07714 Protein tyrosine kinase JRI60_RS49255 PF02472 Biopolymer transport protein ExbD/TolR JRI60_RS49260 PF02472 Biopolymer transport protein ExbD/TolR JRI60_RS49280 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS49290 PF00149 Calcineurin-like phosphoesterase JRI60_RS49300 PF00069 Protein kinase domain JRI60_RS49305 PF01751 Toprim domain JRI60_RS49305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS49305 PF00986 DNA gyrase B subunit, carboxyl terminus JRI60_RS49305 PF00204 DNA gyrase B JRI60_RS49320 PF00486 Transcriptional regulatory protein, C terminal JRI60_RS49320 PF00072 Response regulator receiver domain JRI60_RS49325 PF00989 PAS fold JRI60_RS49325 PF16736 Single Cache-like JRI60_RS49325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS49325 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS49330 PF00072 Response regulator receiver domain JRI60_RS49335 PF00360 Phytochrome region JRI60_RS49335 PF01590 GAF domain JRI60_RS49335 PF08446 PAS fold JRI60_RS49335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS49335 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS49350 PF00069 Protein kinase domain JRI60_RS49365 PF00266 Aminotransferase class-V JRI60_RS49380 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS49385 PF13649 Methyltransferase domain JRI60_RS49395 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JRI60_RS49395 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JRI60_RS49400 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JRI60_RS49400 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JRI60_RS49405 PF00723 Glycosyl hydrolases family 15 JRI60_RS49440 PF00005 ABC transporter JRI60_RS49445 PF02405 Permease MlaE JRI60_RS49490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS49490 PF03466 LysR substrate binding domain JRI60_RS49500 PF01434 Peptidase family M41 JRI60_RS49500 PF17862 AAA+ lid domain JRI60_RS49500 PF00004 ATPase family associated with various cellular activities (AAA) JRI60_RS49515 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS49535 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JRI60_RS49540 PF00743 Flavin-binding monooxygenase-like JRI60_RS49545 PF07859 alpha/beta hydrolase fold JRI60_RS49550 PF00106 short chain dehydrogenase JRI60_RS49585 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS49585 PF00571 CBS domain JRI60_RS49600 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS49605 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JRI60_RS49605 PF12833 Helix-turn-helix domain JRI60_RS49605 PF02805 Metal binding domain of Ada JRI60_RS49605 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JRI60_RS49610 PF00248 Aldo/keto reductase family JRI60_RS49630 PF01022 Bacterial regulatory protein, arsR family JRI60_RS49635 PF02798 Glutathione S-transferase, N-terminal domain JRI60_RS49635 PF00043 Glutathione S-transferase, C-terminal domain JRI60_RS49640 PF03466 LysR substrate binding domain JRI60_RS49640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS49690 PF12706 Beta-lactamase superfamily domain JRI60_RS49695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS49700 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS49700 PF08361 MAATS-type transcriptional repressor, C-terminal region JRI60_RS49710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS49720 PF00712 DNA polymerase III beta subunit, N-terminal domain JRI60_RS49720 PF02768 DNA polymerase III beta subunit, C-terminal domain JRI60_RS49720 PF02767 DNA polymerase III beta subunit, central domain JRI60_RS49750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS49750 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS49770 PF00072 Response regulator receiver domain JRI60_RS49770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS49770 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS49770 PF01627 Hpt domain JRI60_RS49770 PF00672 HAMP domain JRI60_RS49770 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS49775 PF00989 PAS fold JRI60_RS49775 PF00672 HAMP domain JRI60_RS49775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS49775 PF18698 Histidine kinase sensor domain JRI60_RS49775 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS49780 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS49780 PF13191 AAA ATPase domain JRI60_RS49795 PF02983 Alpha-lytic protease prodomain JRI60_RS49835 PF14659 Phage integrase, N-terminal SAM-like domain JRI60_RS49835 PF00589 Phage integrase family JRI60_RS49875 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_RS49905 PF03050 Transposase IS66 family JRI60_RS49905 PF13817 IS66 C-terminal element JRI60_RS49905 PF13005 zinc-finger binding domain of transposase IS66 JRI60_RS49905 PF13007 Transposase C of IS166 homeodomain JRI60_RS49940 PF03466 LysR substrate binding domain JRI60_RS49940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS49945 PF00557 Metallopeptidase family M24 JRI60_RS49955 PF12833 Helix-turn-helix domain JRI60_RS49960 PF00106 short chain dehydrogenase JRI60_RS49970 PF00743 Flavin-binding monooxygenase-like JRI60_RS49985 PF00069 Protein kinase domain JRI60_RS49985 PF07238 PilZ domain JRI60_RS50000 PF00069 Protein kinase domain JRI60_RS50000 PF03793 PASTA domain JRI60_RS50050 PF12852 Cupin JRI60_RS50050 PF12833 Helix-turn-helix domain JRI60_RS50075 PF00067 Cytochrome P450 JRI60_RS50085 PF00440 Bacterial regulatory proteins, tetR family JRI60_RS50085 PF13977 BetI-type transcriptional repressor, C-terminal JRI60_RS50100 PF12146 Serine aminopeptidase, S33 JRI60_RS50115 PF17853 GGDEF-like domain JRI60_RS50115 PF12833 Helix-turn-helix domain JRI60_RS50130 PF00793 DAHP synthetase I family JRI60_RS50160 PF07859 alpha/beta hydrolase fold JRI60_RS50165 PF03793 PASTA domain JRI60_RS50165 PF00069 Protein kinase domain JRI60_RS50195 PF07238 PilZ domain JRI60_RS50195 PF00069 Protein kinase domain JRI60_RS50210 PF04542 Sigma-70 region 2 JRI60_RS50210 PF08281 Sigma-70, region 4 JRI60_RS50215 PF00069 Protein kinase domain JRI60_RS50240 PF03793 PASTA domain JRI60_RS50240 PF00069 Protein kinase domain JRI60_RS50245 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS50245 PF08448 PAS fold JRI60_RS50245 PF00072 Response regulator receiver domain JRI60_RS50245 PF13188 PAS domain JRI60_RS50245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS50255 PF00171 Aldehyde dehydrogenase family JRI60_RS50260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JRI60_RS50260 PF00205 Thiamine pyrophosphate enzyme, central domain JRI60_RS50260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JRI60_RS50265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS50265 PF03466 LysR substrate binding domain JRI60_RS50270 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS50270 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS50285 PF00067 Cytochrome P450 JRI60_RS50290 PF00005 ABC transporter JRI60_RS50295 PF01061 ABC-2 type transporter JRI60_RS50310 PF00069 Protein kinase domain JRI60_RS50315 PF08000 Bacterial PH domain JRI60_RS50330 PF00144 Beta-lactamase JRI60_RS50335 PF00072 Response regulator receiver domain JRI60_RS50335 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS50340 PF00072 Response regulator receiver domain JRI60_RS50340 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS50345 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS50345 PF00072 Response regulator receiver domain JRI60_RS50345 PF13426 PAS domain JRI60_RS50345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS50345 PF08448 PAS fold JRI60_RS50350 PF00561 alpha/beta hydrolase fold JRI60_RS50355 PF12146 Serine aminopeptidase, S33 JRI60_RS50385 PF17990 L-Lysine epsilon oxidase N-terminal JRI60_RS50385 PF18417 L-lysine epsilon oxidase C-terminal domain JRI60_RS50390 PF01494 FAD binding domain JRI60_RS50405 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS50405 PF00501 AMP-binding enzyme JRI60_RS50420 PF16197 Ketoacyl-synthetase C-terminal extension JRI60_RS50420 PF00109 Beta-ketoacyl synthase, N-terminal domain JRI60_RS50420 PF08990 Erythronolide synthase docking JRI60_RS50420 PF02801 Beta-ketoacyl synthase, C-terminal domain JRI60_RS50420 PF00698 Acyl transferase domain JRI60_RS50420 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS50420 PF00550 Phosphopantetheine attachment site JRI60_RS50420 PF14765 Polyketide synthase dehydratase JRI60_RS50420 PF08659 KR domain JRI60_RS50430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JRI60_RS50430 PF12806 Acetyl-CoA dehydrogenase C-terminal like JRI60_RS50430 PF02770 Acyl-CoA dehydrogenase, middle domain JRI60_RS50430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JRI60_RS50460 PF00842 Alanine racemase, C-terminal domain JRI60_RS50460 PF01168 Alanine racemase, N-terminal domain JRI60_RS50475 PF00561 alpha/beta hydrolase fold JRI60_RS50485 PF12697 Alpha/beta hydrolase family JRI60_RS50500 PF00501 AMP-binding enzyme JRI60_RS50500 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS50505 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JRI60_RS50505 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JRI60_RS50525 PF00082 Subtilase family JRI60_RS50525 PF05922 Peptidase inhibitor I9 JRI60_RS50530 PF01790 Prolipoprotein diacylglyceryl transferase JRI60_RS50540 PF01209 ubiE/COQ5 methyltransferase family JRI60_RS50545 PF08281 Sigma-70, region 4 JRI60_RS50545 PF04542 Sigma-70 region 2 JRI60_RS50545 PF12680 SnoaL-like domain JRI60_RS50550 PF01593 Flavin containing amine oxidoreductase JRI60_RS50555 PF00561 alpha/beta hydrolase fold JRI60_RS50560 PF00581 Rhodanese-like domain JRI60_RS50565 PF03449 Transcription elongation factor, N-terminal JRI60_RS50565 PF01272 Transcription elongation factor, GreA/GreB, C-term JRI60_RS50570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS50570 PF00672 HAMP domain JRI60_RS50570 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JRI60_RS50570 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS50570 PF00072 Response regulator receiver domain JRI60_RS50570 PF01627 Hpt domain JRI60_RS50575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS50575 PF13426 PAS domain JRI60_RS50575 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS50575 PF00672 HAMP domain JRI60_RS50580 PF08448 PAS fold JRI60_RS50580 PF00072 Response regulator receiver domain JRI60_RS50580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS50580 PF13188 PAS domain JRI60_RS50580 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS50605 PF00561 alpha/beta hydrolase fold JRI60_RS50635 PF02566 OsmC-like protein JRI60_RS50640 PF00296 Luciferase-like monooxygenase JRI60_RS50645 PF01047 MarR family JRI60_RS50675 PF00069 Protein kinase domain JRI60_RS50675 PF03793 PASTA domain JRI60_RS50680 PF00171 Aldehyde dehydrogenase family JRI60_RS50690 PF00905 Penicillin binding protein transpeptidase domain JRI60_RS50705 PF03466 LysR substrate binding domain JRI60_RS50705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS50745 PF07859 alpha/beta hydrolase fold JRI60_RS50750 PF14226 non-haem dioxygenase in morphine synthesis N-terminal JRI60_RS50750 PF03171 2OG-Fe(II) oxygenase superfamily JRI60_RS50755 PF13409 Glutathione S-transferase, N-terminal domain JRI60_RS50760 PF13191 AAA ATPase domain JRI60_RS50760 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS50765 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS50765 PF10518 TAT (twin-arginine translocation) pathway signal sequence JRI60_RS50765 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding JRI60_RS50770 PF02954 Bacterial regulatory protein, Fis family JRI60_RS50770 PF00072 Response regulator receiver domain JRI60_RS50770 PF00158 Sigma-54 interaction domain JRI60_RS50775 PF00753 Metallo-beta-lactamase superfamily JRI60_RS50780 PF00581 Rhodanese-like domain JRI60_RS50785 PF01925 Sulfite exporter TauE/SafE JRI60_RS50800 PF02743 Cache domain JRI60_RS50800 PF00672 HAMP domain JRI60_RS50800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JRI60_RS50805 PF03435 Saccharopine dehydrogenase NADP binding domain JRI60_RS50830 PF00072 Response regulator receiver domain JRI60_RS50830 PF02954 Bacterial regulatory protein, Fis family JRI60_RS50830 PF00158 Sigma-54 interaction domain JRI60_RS50835 PF12728 Helix-turn-helix domain JRI60_RS50840 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB JRI60_RS50840 PF00672 HAMP domain JRI60_RS50840 PF08448 PAS fold JRI60_RS50840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS50840 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS50845 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS50845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS50845 PF13492 GAF domain JRI60_RS50845 PF13493 Domain of unknown function (DUF4118) JRI60_RS50845 PF02702 Osmosensitive K+ channel His kinase sensor domain JRI60_RS50850 PF02669 K+-transporting ATPase, c chain JRI60_RS50860 PF03814 Potassium-transporting ATPase A subunit JRI60_RS50870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JRI60_RS50875 PF06167 Glucose-regulated metallo-peptidase M90 JRI60_RS50890 PF00484 Carbonic anhydrase JRI60_RS50920 PF02954 Bacterial regulatory protein, Fis family JRI60_RS50920 PF00158 Sigma-54 interaction domain JRI60_RS50920 PF00072 Response regulator receiver domain JRI60_RS50925 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS50925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS50925 PF00072 Response regulator receiver domain JRI60_RS50925 PF13188 PAS domain JRI60_RS50925 PF08448 PAS fold JRI60_RS50945 PF00561 alpha/beta hydrolase fold JRI60_RS50950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JRI60_RS50950 PF00128 Alpha amylase, catalytic domain JRI60_RS50960 PF00106 short chain dehydrogenase JRI60_RS50970 PF00561 alpha/beta hydrolase fold JRI60_RS51000 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS51000 PF00672 HAMP domain JRI60_RS51000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS51020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JRI60_RS51020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JRI60_RS51045 PF01593 Flavin containing amine oxidoreductase JRI60_RS51055 PF04754 Putative transposase, YhgA-like JRI60_RS51095 PF01476 LysM domain JRI60_RS51095 PF01471 Putative peptidoglycan binding domain JRI60_RS51095 PF01510 N-acetylmuramoyl-L-alanine amidase JRI60_RS51105 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JRI60_RS51140 PF00067 Cytochrome P450 JRI60_RS51150 PF13191 AAA ATPase domain JRI60_RS51150 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS51165 PF16655 PhoD-like phosphatase, N-terminal domain JRI60_RS51165 PF09423 PhoD-like phosphatase JRI60_RS51175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS51175 PF08448 PAS fold JRI60_RS51175 PF00072 Response regulator receiver domain JRI60_RS51175 PF13188 PAS domain JRI60_RS51175 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS51180 PF08448 PAS fold JRI60_RS51180 PF08447 PAS fold JRI60_RS51180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS51190 PF04650 YSIRK type signal peptide JRI60_RS51195 PF00654 Voltage gated chloride channel JRI60_RS51205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS51230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JRI60_RS51260 PF00069 Protein kinase domain JRI60_RS51260 PF03793 PASTA domain JRI60_RS51265 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS51270 PF05736 OprF membrane domain JRI60_RS51270 PF00691 OmpA family JRI60_RS51285 PF13091 PLD-like domain JRI60_RS51285 PF13396 Phospholipase_D-nuclease N-terminal JRI60_RS51295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_RS51310 PF03949 Malic enzyme, NAD binding domain JRI60_RS51310 PF00390 Malic enzyme, N-terminal domain JRI60_RS51315 PF07689 KaiB domain JRI60_RS51315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS51315 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS51320 PF00360 Phytochrome region JRI60_RS51320 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS51320 PF08446 PAS fold JRI60_RS51320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS51320 PF01590 GAF domain JRI60_RS51345 PF00534 Glycosyl transferases group 1 JRI60_RS51360 PF00497 Bacterial extracellular solute-binding proteins, family 3 JRI60_RS51360 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS51360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS51375 PF00291 Pyridoxal-phosphate dependent enzyme JRI60_RS51395 PF00501 AMP-binding enzyme JRI60_RS51395 PF13193 AMP-binding enzyme C-terminal domain JRI60_RS51400 PF00107 Zinc-binding dehydrogenase JRI60_RS51400 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS51415 PF01555 DNA methylase JRI60_RS51445 PF03633 Glycosyl hydrolase family 65, C-terminal domain JRI60_RS51445 PF02358 Trehalose-phosphatase JRI60_RS51445 PF03632 Glycosyl hydrolase family 65 central catalytic domain JRI60_RS51445 PF03636 Glycosyl hydrolase family 65, N-terminal domain JRI60_RS51450 PF02358 Trehalose-phosphatase JRI60_RS51450 PF03633 Glycosyl hydrolase family 65, C-terminal domain JRI60_RS51450 PF03632 Glycosyl hydrolase family 65 central catalytic domain JRI60_RS51450 PF03636 Glycosyl hydrolase family 65, N-terminal domain JRI60_RS51455 PF02397 Bacterial sugar transferase JRI60_RS51465 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS51465 PF00069 Protein kinase domain JRI60_RS51520 PF00072 Response regulator receiver domain JRI60_RS51550 PF12891 Glycoside hydrolase family 44 JRI60_RS51550 PF00942 Cellulose binding domain JRI60_RS51565 PF02463 RecF/RecN/SMC N terminal domain JRI60_RS51575 PF01757 Acyltransferase family JRI60_RS51580 PF03808 Glycosyl transferase WecB/TagA/CpsF family JRI60_RS51585 PF01425 Amidase JRI60_RS51600 PF00582 Universal stress protein family JRI60_RS51610 PF13657 HipA N-terminal domain JRI60_RS51610 PF07804 HipA-like C-terminal domain JRI60_RS51620 PF00404 Dockerin type I domain JRI60_RS51620 PF00150 Cellulase (glycosyl hydrolase family 5) JRI60_RS51620 PF17996 Carbohydrate esterase 2 N-terminal JRI60_RS51620 PF00657 GDSL-like Lipase/Acylhydrolase JRI60_RS51640 PF00881 Nitroreductase family JRI60_RS51645 PF07992 Pyridine nucleotide-disulphide oxidoreductase JRI60_RS51650 PF12833 Helix-turn-helix domain JRI60_RS51650 PF02311 AraC-like ligand binding domain JRI60_RS51665 PF00069 Protein kinase domain JRI60_RS51665 PF03793 PASTA domain JRI60_RS51685 PF04228 Putative neutral zinc metallopeptidase JRI60_RS51695 PF00176 SNF2 family N-terminal domain JRI60_RS51695 PF00271 Helicase conserved C-terminal domain JRI60_RS51695 PF12419 SNF2 Helicase protein JRI60_RS51700 PF03330 Lytic transglycolase JRI60_RS51705 PF05697 Bacterial trigger factor protein (TF) JRI60_RS51705 PF05698 Bacterial trigger factor protein (TF) C-terminus JRI60_RS51705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JRI60_RS51715 PF03466 LysR substrate binding domain JRI60_RS51715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS51720 PF00561 alpha/beta hydrolase fold JRI60_RS51730 PF01361 Tautomerase enzyme JRI60_RS51750 PF02581 Thiamine monophosphate synthase JRI60_RS51755 PF02110 Hydroxyethylthiazole kinase family JRI60_RS51780 PF00196 Bacterial regulatory proteins, luxR family JRI60_RS51820 PF07676 WD40-like Beta Propeller Repeat JRI60_RS51820 PF00326 Prolyl oligopeptidase family JRI60_RS51840 PF00069 Protein kinase domain JRI60_RS51840 PF03793 PASTA domain JRI60_RS51845 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS51845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS51905 PF00069 Protein kinase domain JRI60_RS51905 PF03793 PASTA domain JRI60_RS51930 PF01139 tRNA-splicing ligase RtcB JRI60_RS51955 PF04389 Peptidase family M28 JRI60_RS51965 PF00753 Metallo-beta-lactamase superfamily JRI60_RS51975 PF00672 HAMP domain JRI60_RS51975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS51975 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS51975 PF18698 Histidine kinase sensor domain JRI60_RS51995 PF02698 DUF218 domain JRI60_RS52005 PF13018 Extended Signal Peptide of Type V secretion system JRI60_RS52005 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain JRI60_RS52005 PF05594 Haemagluttinin repeat JRI60_RS52005 PF05860 haemagglutination activity domain JRI60_RS52005 PF13332 Hemagglutinin repeat JRI60_RS52025 PF00069 Protein kinase domain JRI60_RS52025 PF03793 PASTA domain JRI60_RS52045 PF00211 Adenylate and Guanylate cyclase catalytic domain JRI60_RS52060 PF00723 Glycosyl hydrolases family 15 JRI60_RS52070 PF00107 Zinc-binding dehydrogenase JRI60_RS52070 PF08240 Alcohol dehydrogenase GroES-like domain JRI60_RS52080 PF07690 Major Facilitator Superfamily JRI60_RS52085 PF00072 Response regulator receiver domain JRI60_RS52110 PF00069 Protein kinase domain JRI60_RS52140 PF00069 Protein kinase domain JRI60_RS52155 PF07885 Ion channel JRI60_RS52155 PF00027 Cyclic nucleotide-binding domain JRI60_RS52165 PF00248 Aldo/keto reductase family JRI60_RS52200 PF00069 Protein kinase domain JRI60_RS52240 PF00069 Protein kinase domain JRI60_RS52285 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JRI60_RS52285 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JRI60_RS52290 PF00005 ABC transporter JRI60_RS52320 PF05175 Methyltransferase small domain JRI60_RS52340 PF06224 Winged helix DNA-binding domain JRI60_RS52355 PF00069 Protein kinase domain JRI60_RS52355 PF03793 PASTA domain JRI60_RS52360 PF03466 LysR substrate binding domain JRI60_RS52360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JRI60_RS52365 PF07690 Major Facilitator Superfamily JRI60_RS52400 PF00149 Calcineurin-like phosphoesterase JRI60_RS52420 PF09587 Bacterial capsule synthesis protein PGA_cap JRI60_RS52480 PF03793 PASTA domain JRI60_RS52480 PF00069 Protein kinase domain JRI60_RS52485 PF07690 Major Facilitator Superfamily JRI60_RS52515 PF01734 Patatin-like phospholipase JRI60_RS52545 PF01374 Glycosyl hydrolase family 46 JRI60_RS52550 PF00704 Glycosyl hydrolases family 18 JRI60_RS52550 PF06483 Chitinase C JRI60_RS52565 PF08448 PAS fold JRI60_RS52565 PF08447 PAS fold JRI60_RS52565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS52570 PF01209 ubiE/COQ5 methyltransferase family JRI60_RS52575 PF00512 His Kinase A (phospho-acceptor) domain JRI60_RS52575 PF00672 HAMP domain JRI60_RS52575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JRI60_RS52590 PF11741 AMIN domain JRI60_RS52590 PF00263 Bacterial type II and III secretion system protein JRI60_RS52590 PF03958 Bacterial type II/III secretion system short domain JRI60_RS52590 PF07660 Secretin and TonB N terminus short domain JRI60_RS52615 PF11638 DnaA N-terminal domain JRI60_RS52615 PF08299 Bacterial dnaA protein helix-turn-helix JRI60_RS52615 PF00308 Bacterial dnaA protein JRI60_RS52620 PF00468 Ribosomal protein L34 JRI60_RS52625 PF00825 Ribonuclease P JRI60_RS52630 PF01809 Putative membrane protein insertion efficiency factor JRI60_RS52635 PF02096 60Kd inner membrane protein JRI60_RS52635 PF14849 YidC periplasmic domain JRI60_RS52650 PF01926 50S ribosome-binding GTPase JRI60_RS52650 PF10396 GTP-binding protein TrmE N-terminus JRI60_RS52650 PF12631 MnmE helical domain JRI60_RS52670 PF13460 NAD(P)H-binding JRI60_RS52670 PF11066 Protein of unknown function (DUF2867) JRI60_RS52715 PF01343 Peptidase family S49 JRI60_RS52720 PF00561 alpha/beta hydrolase fold JRI60_RS52735 PF05193 Peptidase M16 inactive domain JRI60_RS52735 PF00675 Insulinase (Peptidase family M16) JRI60_RS52740 PF01209 ubiE/COQ5 methyltransferase family JRI60_RS52745 PF00266 Aminotransferase class-V JRI60_RS52760 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JRI60_RS52760 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JRI60_RS52765 PF01230 HIT domain JRI60_RS52775 PF00069 Protein kinase domain JRI60_RS52775 PF08308 PEGA domain JRI60_RS52790 PF00069 Protein kinase domain