JRI60_RS00030    6741 ..    6777 +  -3.5  -2.88822   GGTGGCCTAGGCCCC   GCCCGGCGGGC-CGGC CTCCGA GCCGCGCTCGCCCGCA    TCCTTATATAGGCGG  43 31
JRI60_RS00035 NONE
        bacM NONE
JRI60_RS00045    8964 ..    9012 +  -9.4   -2.9294   GATGAATCCCCCCTT CGGACCCGCCAGCCCACCCTTC CCCCC GGATGGTCGGCTCGCGGGTACA TGTGTGACTGCTGTC  56 109
JRI60_RS00070 NONE
JRI60_RS00090   18690 ..   18725 +  -4.7  -4.00038   GCCCACGCCGAAGCC    GGCCGCGCGGCG GGAGGTGCTGTGA TGC-GCGCGGCC    TTTCTCCTGGTGGTC  61 1
JRI60_RS00095   19693 ..   19706 +  -2.3  -3.16564   CGCGTGGTTTAAGGC               CGCGC ATGG GTGTG                TTCATGAGGTGGGCG  42 63
JRI60_RS00100   20789 ..   20809 + -15.5  -3.14132   CGCGCCCGGCGCGAA            CTGGTCCGA CAG TCGGACCAG            TTGGTGAAGAGCGGG  78 70
JRI60_RS00105 NONE
JRI60_RS00110   22409 ..   22422 +  -4.5  -3.23395   ACAGCCAAAGGAGCG               CG-CGC ATG GCGACG               TTCGTGCTGGTGCAT  49 122
JRI60_RS00115   23231 ..   23252 +  -4.3   -3.8594   GTCGCTGATGACTTT           CCGGTTTGC AGGT GAATACCGG            TTTGGTCTAGCTATT  58 108
JRI60_RS00120   24396 ..   24418 +    -9  -3.30124   GATACTGGATGCCCT           CGCCGCGCAG TTC CTGAGCCGCG           TTCTCCAGGATGGAC  58 491
JRI60_RS00145   29203 ..   29217 +  -2.7  -3.05844   GCGGTGAGGGACTCG               CGGCC TCAGC GGCCC               TGTTCGAGTGCGGCG  42 34
JRI60_RS00165   33167 ..   33205 + -19.6  -2.89881   TCTCTAGGGTCGAAA  GCCCTCGGAGCCGCGCG AGAGAG CGCGGGGC-CCGAGGGC   TCTATGGCCTGGATC  95 246
JRI60_RS00170 NONE
JRI60_RS00175 NONE
        nrfD NONE
JRI60_RS00185 NONE
JRI60_RS00190 NONE
JRI60_RS00195 NONE
JRI60_RS00200 NONE
        coxB NONE
JRI60_RS00210 NONE
JRI60_RS00215 NONE
JRI60_RS00220   45099 ..   45111 +  -7.7  -3.06915   TTGGGAGACGGGGCG                CTCCT TGC AGGAG                TTGAATCAGGTACGT  53 320
JRI60_RS00225   45855 ..   45865 +  -2.4  -3.21099   GGGGAGGGCGTGAGA                 CCCG CTA CGGC                 TTCGTCCTGGGCAAC  42 61
JRI60_RS00230 NONE
JRI60_RS00235 NONE
JRI60_RS00240 NONE
JRI60_RS00245 NONE
JRI60_RS00250 NONE
JRI60_RS00255   52494 ..   52504 +  -2.4  -2.71744   GCAACTGCTCCTGCA                 CCAC GAA GAGG                 TCGTATCTGCTGGTA  39 502
JRI60_RS00270   55294 ..   55310 +  -8.7  -3.86897   TCCCAAGCGGCCAAC              TGCACGG TCA CCGTGTA              TTTATAGGCGCTGGA  67 106
JRI60_RS00290   58642 ..   58675 +  -4.3  -2.52464   ACACGAATATTCACA     CCGCTCGCTAGGCGC TGGA GAGCCTCCCGGACGG      TAAGTTGGCGGAGGA  42 183
JRI60_RS00295   60307 ..   60324 +  -2.6   -2.6732   TAACATCGCCGGTGC             CGTCCG TCTCTC TGGGCG              CTGTTTGCCTTGCGG  38 38
JRI60_RS00300 NONE
JRI60_RS00305 NONE
JRI60_RS00310 NONE
JRI60_RS00315   62466 ..   62496 +  -5.2   -3.7282   CCGCCGGGGCGGGGT       GGGCCCGCCTCG GCGGCAG CACGGAGGGCCC       TTGTTCATGCGGTCC  57 55
JRI60_RS00325 NONE
JRI60_RS00330   64972 ..   65006 +  -6.9  -3.01712   CTGCCATTCTGGGAT     ACCCGAGCGGGGCTC CCCGA GGGCCGCGCCTGGGG     TCTTCAGAGGGAGAA  51 190
JRI60_RS00335   66403 ..   66447 + -14.9  -3.63627   AACTCGATGACGAGC GCCGGCGGGGGAGGGGGTGGG AGC CTCACTCCTTCCGCTTCTGGC TTTGGCGTGTAGCGC  82 245
JRI60_RS00350   69170 ..   69188 +  -3.2  -3.15346   CAAAGAAACAGGGTC             TCACTT GATTTGA AAGTGA             TATTCCTGGAATATT  44 77
JRI60_RS00355   71511 ..   71525 +  -7.1  -3.05343   AGATGCCGTAGCTGT               TCCCC ACGTA GGGGA               TGTTGACGGTGTACG  49 185
JRI60_RS00385   76990 ..   77002 +  -4.8  -2.70932   GCCCTCGGCGCTCCA                GACC CAGAT GGTC                TCGTTGAGGGGCAGC  42 210
        uvrA   84290 ..   84302 +  -7.7  -3.21416   CGTGTGGTCCGGTCC                TGACG CTG CGTCA                TTCCTCGTGGCGCTC  54 106
JRI60_RS00410   85548 ..   85572 +    -3  -2.78384   GTGTCTCGGACATCC         TGCTCACCA-AG GGG CTCTGGTGA-CA         TGTCATGGAAGCCCG  40 3
JRI60_RS00415 NONE
JRI60_RS00435   90120 ..   90152 +  -8.3  -3.89055   TGACGGAGTTGTTCC      GTTTGGAGGCACGGC CAC GCCGAGCTTCCGGAG      TTTCTCCCGGTATGT  69 239
JRI60_RS00450   92776 ..   92801 +  -3.2  -3.05463   TGGTGTGGCATTGCC         TAGCGTGCGGC CTCCA GCCGT-CGCAA         TTGAGTGGCGAGACT  42 366
JRI60_RS00470 NONE
JRI60_RS00475   95053 ..   95075 +    -9  -3.84406   CGGAGGCGCCACCGA           GCGCGGACTC GAA GAGCGCGCGC           TTCTTCTCCTGCAGG  67 99
JRI60_RS00490  100868 ..  100880 +  -3.3   -3.7282   CACGAAATCCAGAAT                CTGCG TGC CGAAG                TTGTTCGTCGCGTGG  56 468
JRI60_RS00500  103156 ..  103188 + -11.9  -2.79796   CTGCCAGCAGGGGCT      GCTCAGGGGCGCAGG GGG CCTGGGCCTGTGGGC      TGTGGTGGCGTAAGC  62 443
JRI60_RS00520 NONE
JRI60_RS00525  108149 ..  108164 + -11.8  -2.62396   GAGCTCTGGGCCTGT              GGCGCC ATAT GGCGCC               TGCTATGCGCCACTG  61 95
JRI60_RS00535  110254 ..  110273 +  -4.3  -3.31144   CCGTGGAGGGATCTC            GCATCAGG ACACA CC-GATGC            TTCTCGAGGTCGCGC  49 402
JRI60_RS00545  111907 ..  111925 +  -4.5  -2.64616   GCGGAGGCTCAGCGG             CGTGGGA GGATG TCTCGCG             TCATGTCGATGAAAG  42 67
JRI60_RS00555  114056 ..  114075 +  -6.4   -3.4072   CATCCTGGATGGCGC            GCACG-CTC ACG GGGACGTGC            TTGTGGTACGGCGTG  55 69
JRI60_RS00590 NONE
JRI60_RS00595  123001 ..  123012 +  -3.6  -3.66018   GGTCACCGCGCCGCC                GGTC TGAC GGCC                 TTCTTCGCATACTCC  54 115
        ligD  128070 ..  128099 +  -4.2  -3.33696   CGCCCGCTTCCGGTA       CGGCTCGAGCTT CTTGGC GAGCTCCACCCG        TTGCTTCGCGGCGAA  49 366
JRI60_RS00620  131960 ..  131972 +  -4.7  -3.33696   ACAAGTAGGAAAGGT                GGGCC CGG GTCCC                TTCATTGACGGGCGG  49 196
JRI60_RS00625  132739 ..  132754 +  -3.2  -3.94877   CAATACGGTGCGACA              GGGGAT GAAG ATCACC               TTCTTCTTCGACGGT  58 164
JRI60_RS00640 NONE
JRI60_RS00670  142620 ..  142633 +  -9.5  -2.62983   CACGGTGAAGGTCGA               GCCCC TCCC GGGGC                TGCTCTCCACCTGGA  53 479
JRI60_RS00690  147732 ..  147766 +   -10  -2.76263   CGAAGTGTCTGACAC    CCTTC-CCGAGTGCC GCGGCA GGCGCACGGTGAAGG     TGGTTCCCTCCTCGG  54 89
JRI60_RS00700  152839 ..  152866 +  -4.8  -3.54459   AGGGGCCACGACCTG        GACGGGTGAGACT CCC GGTCCC-CTCGTC        TTTCCAAGGACTTGA  52 96
JRI60_RS00705 NONE
JRI60_RS00710  155050 ..  155060 +  -8.2  -3.76224   CTGGGGCTGTCGCAG                 CGCG TGT CGCG                 TTTGGTCCATCACCC  68 43
JRI60_RS00715  155990 ..  156013 +  -3.8  -3.14344   CGCCCGCATCTCCTG          TTCGA-GCTCG GCG CGGGCCTCGGG          TTCCTCGGGCCACTC  45 328
JRI60_RS00725  159001 ..  159026 +  -3.1  -3.10796   ACTCGAGGTTGATCG         GGTGCGGCTCG AAAC CTGGCTGCAGC          TCTTCCATCATCGCG  43 327
JRI60_RS00735  160606 ..  160621 +  -4.6  -3.27525   TCTCGGTGGACACCT              TCTCGG ATTA CCGAGC               TTCGATTTCCAAGAA  49 168
JRI60_RS00740  162285 ..  162314 +  -9.9  -3.18274   CCTGAGATTTCGCCA       GCGG-GGATGGCGC GGG GCGCTGCCCACCGC       TTCCATTCAGCTCAG  62 36
JRI60_RS00750  165870 ..  165898 + -18.9  -3.66784   GTGACCCGAGTCCGA        GTGCGCCGCTCGT CGT AAGAGCGGCGCAC        TTCTGTTGGGGCTGG  95 37
JRI60_RS00755  166901 ..  166911 +  -3.2   -2.8333   CGTGGTCTCGGTGAG                 CTTG TCC CAGG                 TGATCTTCTCGTTGG  40 237
JRI60_RS00785  173411 ..  173454 + -16.8  -3.14132   CGACGCCCATCACGC GCGCCGCCCCC-CCGCGGAA CTCGAA TTCCGCGGCGGGGGCC-CGC TTCATGCCCGAGGCC  84 74
JRI60_RS00800  175465 ..  175475 +  -2.4  -2.73554   CTCCAGTGCCTGCAC                 CCGG ACC CCAG                 CTTCTCGTTCCTTGA  38 0
JRI60_RS00805  176469 ..  176521 +  -2.7  -3.99374   TTGTCGCGGTGTTCC GAGAGG-CGGCAGAGCGGTGGAGTC GGGGG GATTTCTCGGCTC-GCTTTCCTCTC TTCTTCTTCCTACCG  58 254
JRI60_RS00820 NONE
JRI60_RS00825  182348 ..  182360 +  -3.3  -3.66844   CTGGGACCGGGACGC                CGTGC TCC GCACC                TTCTTCGCGTATCCC  53 130
JRI60_RS00830  183084 ..  183125 + -12.9  -2.64616   GGCGCGCCACCAGCT CCGCGGTGAAGCGCGTGCGC TCG GCGGGCACG-TGCACCGCGG TGATGTAGCTGGCCG  62 524
JRI60_RS00845  186657 ..  186700 +  -3.9  -2.53715   TTCCGGCACCTGGAT GCGTAGAGTGTG-CGGGATGAG TGC CTCG-CCCGACAC-CTCCACCC CTTCCTCCTCGTCCC  40 79
JRI60_RS00850  187761 ..  187771 +  -2.4  -2.96329   ACGGAAAGTCCAGTC                 GCCG CGT CCGC                 TCCTTCTTCGGTTCC  41 61
JRI60_RS00855  188872 ..  188892 +  -5.3  -3.35327   TAGACATGCCGATTT            TCTCGAACG TTT CGACCGAGA            TTATGCCAGTTTCGT  53 38
JRI60_RS00860  189721 ..  189760 + -14.2  -3.00298   GGCATCCACATGCCC  CGCCCGAGC-GCCTCGGGC ACA GCCCGGGGCCGTTGGGGCA  TGTCTCCTTGCCCCA  72 75
JRI60_RS00865  190469 ..  190481 +  -3.3  -3.01791   CTGGCCATTGGCGCC                GCCAG CGT CTGGG                TCTTCAACGGAGCGT  42 53
JRI60_RS00880  193817 ..  193827 +  -8.2  -2.56271   CCCTGCAGAGCGACT                 GCGG GTT CCGC                 CTCTTCTGCTGACCG  52 3
JRI60_RS00885 NONE
JRI60_RS00890  196752 ..  196769 +  -6.9  -2.97747   GGAGGCCGAACGGGC             CGCGCAC TGAC GTGCGCC              TCTCTCCTCTCCCAC  51 16
JRI60_RS00905  200044 ..  200056 +  -9.1  -4.38712   ACGCTCGTGGCCGCG                CCCTG TTC CAGGG                TTTTGTAGAAGTCGC  78 220
JRI60_RS00920 NONE
JRI60_RS00945  206407 ..  206437 +  -6.1  -2.85351   CTGGGGAGAAGCGGC      GAGCG-GCGTCTGG TGCC TCTGACGCGTGCTC       TCTAGTCTCCGAGGC  48 87
JRI60_RS00950  207076 ..  207096 +    -6  -3.37464   ACCGGCCCATCGGCT            CGCGGGTG AGGTG CGCGCGCG            TTCTGGCGTTGCTCC  55 408
JRI60_RS00970  210461 ..  210484 +  -6.6  -3.07222   TGTTGGCCACGCGTC          CGACCTGTCG GTCG CGGTCGGTCG           TCTTCGCCTCGTACT  49 295
JRI60_RS00980  213548 ..  213577 + -17.2   -2.8294   GACCCGGACGTAGCG       GGTGGAGCGCGGC GCCCG GCCGCGC-CCACC       TACTTCTCGCCGGTG  82 42
JRI60_RS01000 NONE
JRI60_RS01005 NONE
JRI60_RS01010 NONE
JRI60_RS01015  222665 ..  222712 + -22.9  -3.87815   CCCGGCCTTGAAGCC CACGAGGGCCCTCGTCCGCGGA TGTTC TTCGCG-ACAAGGGCCCTCGTG TTTCTCAGGCTCGAC 100 30
JRI60_RS01045  229425 ..  229472 +  -9.1  -3.01791   TGTCCACCGCGTTCA TGAAGATGCTGTCCTTCGCGT AGTCGG GCGCCGAGGTCAGCGTCATCA TGTTCAGCGCGGCCT  54 240
JRI60_RS01060  232593 ..  232608 +  -7.5  -3.61398   GGTCGGAGAGTAGAG              CGCCG CCTGCC CGGCG               TTGTTCACCACCAGC  61 256
JRI60_RS01070  237285 ..  237308 + -17.4  -5.63517   GGTTCATCCCTCCGA          GGCCGCCCCT TCAC GGGGGCGGCC           TTTTTTCTTTCCGGG 100 53
JRI60_RS01075  238666 ..  238717 +  -4.9  -3.66139   TAGTCCGTCCCTCTC CGTAGCACGCCGCTGCCGGGC ACTCCTTCCC GCCCGGCAGCGGGTTACAGCC TTTCGGGTGTGTCTA  55 38
JRI60_RS01085 NONE
JRI60_RS01090  242812 ..  242826 +  -5.6  -2.89564   GGCCACCCGGCATGC               CCGCGT GGG AGGCGG               TGTGTAGCATCCGCG  46 4
JRI60_RS01095  244676 ..  244703 +  -3.2  -3.99374   CCGCGGCCGGTACGT        CGACAGGTCCGG TACC CTGCTCCAGTCG         TTCTTGTTGATGCCG  59 350
JRI60_RS01115  250449 ..  250486 + -20.5  -2.70932   AAGAAGTAGGAATCA   GGCGCGTCTGGTCCGCC AGAT GGCGAGCCGGGCGCGCC    TGCTTCACCAACCCC  95 39
JRI60_RS01120 NONE
JRI60_RS01125  252597 ..  252637 +    -3  -2.94099   CGTTGCCCGCCGTGT  CCTTGTGAGCCGAGGGGC CTCGC GCCCCTGTGCCCTGGAGG  TCTCTCATGAAAAGG  41 18
JRI60_RS01130  254057 ..  254070 +  -3.7  -4.63527   CTCCGGAAGCAACAA               CGGCC GTGA GCCCG                TTTTTCCAGTCCTCG  73 17
JRI60_RS01135  256071 ..  256105 + -12.1  -3.29727   CTACTAGCCTCTGGG    CGC-GGGGGGCACCTC GCCC GGGGTGCCCCTCGGAG     TGTTGGTTGCTTGAC  71 34
JRI60_RS01140  257059 ..  257073 +  -3.4  -3.25823   AACACGATGGCATCC               CAGGTG CGG CGCCAG               TTGGTGTACCGCGCC  45 117
JRI60_RS01190  269694 ..  269706 +  -4.7  -3.08798   CTCGGGCAGCTGCAA                GGTGC TTG GCTCC                TGTTAGATGCGGAGT  47 7
JRI60_RS01195  270750 ..  270789 +    -7  -3.78934   GTTTCCTCGAGCCCG  CGCCCGTCTGGAAGCTGGG CTT CCC-GTGTCCAGGCATGCG  TTGTTCTGCCAGACG  64 121
JRI60_RS01200  271977 ..  271990 +  -4.5  -3.40907   CCTGGAAGTAGACCC               CG-CGG CCT CCGTCG               TTGGTGTTGATCTCA  49 102
JRI60_RS01215 NONE
JRI60_RS01220 NONE
JRI60_RS01225 NONE
JRI60_RS01230 NONE
JRI60_RS01235  278051 ..  278073 +  -3.2  -3.44051   CTCCCGCGCCTCCCA           CCCGGGCCGG GGC TCGGCTAGCG           TTGTCCTCATCGAGC  48 52
JRI60_RS01240  279654 ..  279691 +  -6.2  -2.71144   CCTCGGGGAGTGCGT  CGGCGG-TGGCGAGGGCG CCGT CGAGCT-GCCGGCCGCCG   TGGTTGGAGACGATG  46 315
JRI60_RS01250  283546 ..  283579 +  -8.8  -2.66435   GTGAGGAAGATGACC     TCGGCGGCGAGCTG CTCCTT CGCCTTGTCGCCGA      TCGTGTCGTCCACCT  50 336
JRI60_RS01260  285053 ..  285090 +    -4  -3.41051   CGTCGAGCGCGGCCA   CCTGGGCGGGGGTGAGC TTCAC GTCCAGCGC-GCCCAGG   TTGTCCTCGAGCTGC  49 182
JRI60_RS01270 NONE
JRI60_RS01275  287869 ..  287881 +  -4.7  -2.78935   GGCGGGCGAGCGAAT                GCCCG GGC CGGGG                TGTGCTCGGCGATCT  43 74
JRI60_RS01280  289696 ..  289706 +  -2.4  -3.17212   CCTTCTCGCGGAAGC                 TGGC GAT GCCC                 TTGATGGCGTCATGC  44 270
JRI60_RS01295  292077 ..  292089 +  -5.5  -3.16177   CCATGTCCCCAGGCG                GTTCG AGT CGGAC                TTCAATGTCTGCCAT  49 61
JRI60_RS01300 NONE
JRI60_RS01305  294486 ..  294498 +  -9.1  -3.09933   CTTGCATCCTGGTTG                CTCCC GGG GGGAG                TTGAGTCCGTTCGCG  59 48
JRI60_RS01310  296890 ..  296910 + -11.9  -3.14931   CGCGCTCGGGAGCAA            CTGGTCTGA CAG TCGGACCAG            TTCGTCCGAAGTGCG  66 94
JRI60_RS01330  300741 ..  300790 +   -13  -3.22223   CGGAGGCGAGCCGCA CGCGCAGCACCCGCTGG-C-T-CTC CGG GAGCACGTCCAGCGCGTGCTTCGCG TTGCTGATGAGGTTG  67 294
JRI60_RS01350  311474 ..  311500 +  -5.1  -3.31144   ATGGGAAGGGACGGG        CCCGCG-AGCCA CTGG TGGCTGTACGGG         TTGTACACGTCGGAC  51 293
JRI60_RS01375  323744 ..  323777 +  -5.2  -3.78034   GACCACCACCGCATG     CGTCCTGTCCTTGGC GCCGA GCTT-GGTCAGGACG     TTCTTCATGTGCGTC  60 91
JRI60_RS01385  324958 ..  324970 +  -5.5  -2.72829   GATGGGGAGATGGCT                CCTGG CTG TCAGG                CTTTGGCGCCCTATC  45 170
JRI60_RS01390 NONE
JRI60_RS01395  326386 ..  326402 +  -4.3  -3.72893   CTTCGGGCTTGGCGT              GCTCTCG GGC TGAGCGC              TTTCGTCAACCACTA  55 13
JRI60_RS01405 NONE
JRI60_RS01410  329181 ..  329195 +  -7.8  -3.20747   CGGGCTCGGGGTTGA               TCCGGT CCC ACCGGG               TTCGTACGATTTCCT  54 65
JRI60_RS01415  335254 ..  335270 +  -6.5  -2.73364   GACTCAGCGCGTACT              CGGCG GACTTCA CGCCG              TACTTCCAGTAGGCC  46 315
JRI60_RS01425 NONE
JRI60_RS01430  338020 ..  338039 +  -4.2  -3.86015   TCGGCGGAAAAGTGA            CACGCGGCC CGC GGC-GCCTG            TTTGTAAAGACCCTC  57 521
JRI60_RS01440 NONE
JRI60_RS01445  341122 ..  341139 +  -9.1  -3.15861   TAGACGATGCGCATC             GCTCCGG TGGA CTGGAGC              TTCCTGCGGATGCTC  56 346
JRI60_RS01470 NONE
JRI60_RS01475 NONE
JRI60_RS01485  350040 ..  350073 + -10.9  -3.11118   GAGACGGCCAGACCC     TGCTCGCGCAGGCGC TCCA GCACCTCTGCGAGCG      TCTTCGGTGGGTTCT  60 162
JRI60_RS01495  351219 ..  351233 +  -4.2  -3.65812   AGCCCAGGAGCTCGA               TCTCGG CTA CTGAGG               TTGTGTTGAGCGGAC  54 13
JRI60_RS01500  352661 ..  352671 +  -5.4  -4.41348   GTGAGCTGACCTCCA                 TGGA AGC TCCA                 TTTGTTTGAACCGCC  72 75
JRI60_RS01510  353924 ..  353947 +  -8.1  -2.87211   GGAATGGATCGGTGC          GGTCTGCTC CAATGT GAGCCGACC           TCTGTCCGCCCACCT  52 53
JRI60_RS01515 NONE
JRI60_RS01520  357684 ..  357697 +  -9.5  -3.41051   AGGTCTTGATGTCCA               CGGCG TTCT CGCCG                TTCTCATGGAGGTGG  63 497
JRI60_RS01530 NONE
JRI60_RS01535  361119 ..  361135 +  -6.5  -3.78934   GCTCGAGCTGCAGGT              CCATCAG CTC CGGATGG              TTCTTCTGCCGGAAG  62 300
JRI60_RS01585  369428 ..  369451 +  -8.9  -3.01712   GTAGACTGGAGGAGT          CAGGAAGGG GTTCCA CTCTTCCTG           TGTTGGAAGAACCAG  55 81
JRI60_RS01590  370208 ..  370234 + -10.9  -3.06796   CTGGAAGCCCGCGGC         GAGCACCTCGT CACGC ACGAGCTGCTC         TTCGATGCGGTGCAG  60 175
JRI60_RS01610  374567 ..  374581 +  -2.8  -2.62184   AATCCAAAGGGGGAG               TGGC AATGCAG GCCA               TGGTGTACGAAGGGC  39 47
JRI60_RS01615 NONE
JRI60_RS01620  376287 ..  376300 +  -6.7  -2.78384   ACACCGCGCACGACA               TGACC CGAG GGTCA                TGTCCTCACGCGCGA  48 161
JRI60_RS01625 NONE
JRI60_RS01630  380012 ..  380023 +  -7.2  -3.02144   GCATCCGGTAGGACA                GGCC GCGG GGCC                 TCTTCGCGGACCTGG  51 30
JRI60_RS01655  385850 ..  385867 +    -4  -4.25104   GGGCGGCGTGAACCA             GAGGCG AGGGCC CGCCGC              TTTTAGTAGAAACAC  65 2
JRI60_RS01660  386518 ..  386534 +  -2.1  -3.39449   CTTCCTCGGACGGCG              GCTCGCC TGA GTCCAGC              TTCGTGTTCCTACCG  46 16
JRI60_RS01665  386895 ..  386913 +  -8.8  -3.89354   ATGGGAGACGAACTG             GAACGGCG GCG CGCAGTTC             TTCTTGGTTTCAGGG  68 72
JRI60_RS01705  395154 ..  395188 + -18.5  -2.77523   CGGGAGCACTCACCC     GGGGGCGCGCGGCGG TAGAT TCGCCGCGTGCCCCA     TCCTCTTGCTGGCAA  87 80
JRI60_RS01710  396849 ..  396872 +  -3.6  -3.16564   GGGATTCACGGGGGG          CGGCTGGACC TGGA GGGCCCGCCC           TTCGTAGCCTCGGGG  45 56
JRI60_RS01715  398268 ..  398280 +  -2.6  -2.88249   GGGTAAAGAGTCCCC                CGGG TTGAC TCCG                TGTATGCCCCCTCTC  40 78
JRI60_RS01720 NONE
JRI60_RS01725  401066 ..  401096 +  -6.6  -3.30771   GGCCGCGGAGACGCT       GGCCACCACGGGGC ACC GGGCCATGGCGGCC       TTCTGGACGATCTCG  53 198
JRI60_RS01745  404401 ..  404413 +  -4.8  -2.57344   CGGTGAATCGACGTG                CCGT CCAGT ACGG                GTTGTCCAGCGGGTG  42 80
JRI60_RS01750 NONE
JRI60_RS01755  410072 ..  410124 +    -6  -3.21099   GACGTGGTGGAAAAA GGGGGCTCCTCGCGGTGACCGG AGGTGGTTA CCGGCGGTGGCGAGGTGCACCC TTGCTGGTAGAGGCC  51 163
JRI60_RS01760  410754 ..  410785 +  -3.7  -2.71712   GCCGGTAGCCCACGC     GTTCCACCCCGGGTG CAAT CGCCCGGCG-G-AAC      ATTTCGAGGGCAAGA  41 33
JRI60_RS01765  411699 ..  411719 + -14.1  -3.14132   CGCACTTCGCGCGAA            CTGGTCTGA CAG TCAGACCAG            TTGGTGAAAAGCGGG  73 72
JRI60_RS01780  415122 ..  415158 +  -5.8  -3.28712   GCCCGGCTTGCCATG    CATGCGCGCCAG GGACAGGGCGGAG CTGGCGCGCGCG    TTCTGACGGAGCGGA  51 132
JRI60_RS01795 NONE
JRI60_RS01800  418015 ..  418046 + -10.8  -3.36327   CGTCGTAGATGGCGC      GG-CGCCGGGGCTCT CCG AGCGTCTCGGCGGCC      TTCTGGATGCGCTCG  64 373
JRI60_RS01810 NONE
JRI60_RS01830  431398 ..  431424 +  -8.6  -2.82516   GGAGCGAGGTTGCTC         CGTGCGTGCGTG CGG CACGCGGGAACG         TCTCCTCGTGACGCG  54 125
JRI60_RS01835 NONE
JRI60_RS01840 NONE
JRI60_RS01845  435296 ..  435306 +  -6.8  -3.41527   CCATCGCGCTGAACA                 GGTG GAG CACC                 TTCTCGTCGCGCTTC  53 522
JRI60_RS01890 NONE
JRI60_RS01895  446867 ..  446883 +  -7.9  -3.16564   CGGGGTCGAGCACTT              CGAGCAG TAC CTGCCCG              TTCGTCAGGTCGAGC  54 55
         gor  449884 ..  449900 + -13.7  -3.05384   GTTGAATACACGACT              GTCCGGC CTC GCCGGAC              TTCACTCCAGGAGAA  72 88
JRI60_RS01915  450285 ..  450314 +  -4.1  -3.29511   CACGGTATCAACCGT       CCATGC-CGGCGCC GAC GGCTCCGCGGAGGG       TTCTCCGCCCGTGCG  47 182
JRI60_RS01920  450691 ..  450705 +  -2.1  -4.11371   CCTGAATTCGTCTGT               TCTCG CAGGT TGAGA               TTTTCAACGCTGTTG  58 36
JRI60_RS01925  451078 ..  451094 +  -2.1  -3.43492   CCCTGCTCAACCTGC              TGCAACC CGC GGAGGCA              TTCTGATGGATGTCC  46 3
JRI60_RS01930  451827 ..  451862 +    -8  -2.81464   GGAACTCGAAGGCGC    CGCGCGCCAGCCCCCG CTTC CGGGCGTAGGCCAGCG     TCTCGTCGATCATCC  49 225
JRI60_RS01950  454886 ..  454915 +    -2  -4.07687   TCAGTCGATGGCTGG       ATCACGGTCTTG AAAAGG CTCGACCGTGAC        TTTTAGAAACAACCT  58 49
JRI60_RS01955  455689 ..  455712 +   -11  -3.91541   GGAAGGTCCGGTTCT          TG-CGGGCTCG AAG CGGGCCCGTCA          TTCTTGGTTTCATGA  79 96
JRI60_RS01960  456588 ..  456606 +  -4.5  -2.94466   AGGTAGGACCCGGCT            CGCGGCTG TCCA CGG-CGCG             TCTCATTCCTAGCTT  45 35
JRI60_RS01965 NONE
JRI60_RS01970 NONE
JRI60_RS01975  458255 ..  458278 + -13.1  -2.57795   GGAGTGAGTGGGTAA          GCTGCGGCC CCTCAT GGCCGCGGC           TCCGTTCATCCTCGA  67 34
JRI60_RS01980  459362 ..  459372 +  -4.6  -3.04322   GGAGATCCTCTTCGC                 CGTG CTC CGCG                 TCTTCGACCATTGAA  45 1
JRI60_RS01985  462518 ..  462546 +  -9.5  -3.18507   GATCAGGATTTCTTC        CGCTTGCCCGG GGGACGG CCGGGAGAGCG        TTCCTCCCCTGTGTT  59 131
JRI60_RS01990  464144 ..  464181 +  -6.9  -2.75064   CCACACCCCGTGCCC   CTCTTCCGCGCCCTGTGG TAG TC-CGGGGCCCGGAGGAC   TCCTTGAGTCAGCGC  48 5
JRI60_RS01995  464707 ..  464728 + -10.1  -3.35996   GCGGAGCGAGGGGTC           GC-GCCCGGG TCT TCCGGGCCGC           TTCTCAATGGCCATC  65 161
JRI60_RS02000  466390 ..  466402 +  -4.7  -3.77241   CGCTTGCAGGGTTCG                ACGGG AAA CCCGA                TTTGCGTTAGGCTTT  58 256
JRI60_RS02005  467101 ..  467125 +   -10  -4.07568   ATGACCCTCACCCCA         GCCCTCTC-CC AGAG GGAGAGGGGGC          TTTTCACCGGGGCAA  78 93
JRI60_RS02015  468734 ..  468756 +    -9  -3.29144   CGCCGTCGCGCACCA           GCTGGCGCGC GTC GCGCAGCAGC           TTCTCCACGGCGTCG  61 322
JRI60_RS02025  472635 ..  472659 +  -5.7  -3.98159   AAGGGGAAATCGTCG          GTTTTTTTGGG GCC CCCAGGAAACC          TTTCCTCTTGTGCTG  63 126
JRI60_RS02030  474479 ..  474517 + -16.8   -3.5241   CCAGGCGAGGGGGCA  CG-AGGACCGCGGCCCA CCCCCC TCGGCCGCGGTCCTTCG   TCTTTATCAGGGGTC  89 82
JRI60_RS02040  475922 ..  475950 + -16.8  -3.90112   ACGGGAAAAAGGACA       GAGGGACC-CGCG GACG CGCGAGGTCCCTC        TTTACTTCGCCAGAG  95 59
JRI60_RS02045 NONE
JRI60_RS02050 NONE
JRI60_RS02055  478748 ..  478770 +  -7.6  -3.14132   GATCATCCACCACGG           GGACGATGCC GCA GTCCTCGTCC           TTCATGACGCGGGCC  54 453
JRI60_RS02065  481281 ..  481321 + -12.4  -2.57132   TCCTCCAGCTCGCCA  CCGGCCTCGGGCGCGG CCACCGCCA CCGCGCCCGCGGGCAG  CTTCTCCGCCAGCCG  62 88
JRI60_RS02085  485942 ..  485964 +  -2.7  -3.40403   GCAGTTGCTCGAGCC           TCTCCGT GGGAGTGAG GCGGAGA           TTCTCCTCGAGCAGG  45 199
JRI60_RS02110  489518 ..  489532 +  -3.5  -3.28712   CCCAGCATCCAGTGG              CGCAGC TGGA GC-GCG               TTGTCGCGCAGCCAG  47 250
JRI60_RS02120 NONE
JRI60_RS02125  491826 ..  491844 +  -2.3  -4.07885   CACATTCGCGGCCCG             CCCACTC CGTCA GGGTGGA             TTTTACCCCGAGGTC  58 67
JRI60_RS02130 NONE
JRI60_RS02135  494965 ..  494992 +  -3.4  -3.02144   CTTCTCGCGCAGCAG        GGCCTGATTGG CGTGCAT CCACTC-GGCC        TGTTGCCGGCACTGA  43 290
JRI60_RS02155  498919 ..  498931 +  -9.1  -2.90075   TGCAGCCACACCGCG                CGGAG GCT CTCCG                TCTCGTTCAGCACGG  53 326
JRI60_RS02165 NONE
JRI60_RS02170  501525 ..  501539 +  -2.8  -2.75963   CGCGCTGAGCCCCTC               CCTC ACCGCTC GAGG               CTTTGCAATGCCCCT  40 33
JRI60_RS02175  502697 ..  502713 +  -3.5  -2.87211   ACACGCTGTGGCGCT              GAGGCGG GCG CCTCCCC              TCTGTCCGACAGCAT  43 24
JRI60_RS02180  503765 ..  503784 +  -8.5  -3.65529   GACTTCTGAGTCGCA            CCCGGGC CTCGCC GCCTGGG             TTTCACTCGGAGTCT  65 32
JRI60_RS02185  504954 ..  504974 + -11.9  -3.14132   CGCGTTTCGGACGAA            CTGGTCTGA CAG TCGGACCAG            TTGCTCCCGAGCGCG  66 135
JRI60_RS02195  509267 ..  509300 + -18.9  -2.95116   TGTCACCGTGTAGAC     CCGGGAGGAGGAGGC CATG GCCTCTTCCTCCCGC      TACTTTGCGTCCTGG  90 63
JRI60_RS02210  511309 ..  511319 +  -4.6  -3.73224   GATGGTCCTCCGCGT                 GTCG TCG CGGC                 TTTCATGGGGACTCC  55 133
JRI60_RS02215  512686 ..  512704 +    -8  -3.51329   CACCACGTCGTAGCG             CAGCGGGG GAA CCTCGCGG             TTCTCCTTGGGGCTG  58 494
JRI60_RS02230  515911 ..  515928 +  -9.8  -3.12327   TGGAACAGGCGCAGT             CCCGCG GGGCAG CGCGGG              TGTTCCGTGTCCACC  57 196
JRI60_RS02240 NONE
JRI60_RS02245  518201 ..  518219 +  -6.6  -3.45849   ATCCGTTGACGGTAG             GCTTGGCC CAT GGTCGGGC             TTCTCCTGCTGTGCC  55 32
JRI60_RS02250  519379 ..  519389 +  -4.6  -4.07568   TGTACCAGGGCATGT                 GCGC GAA GTGC                 TTTTGCAGCACCGGC  63 286
JRI60_RS02260  521187 ..  521208 +  -3.5  -3.40403   GGCACCCTGCTCTTC           GCGGGTGGG CTGC CCCTCCTCC            TTCTCGTGCCGCGGA  47 110
JRI60_RS02290  529084 ..  529108 +  -9.9  -3.84406   GAAGACCCTCACCCC          GGCCCTCTCCC AGG GGGAGAGGGGG          TTCTTCTAGTAGCGG  74 69
JRI60_RS02300 NONE
JRI60_RS02305  532105 ..  532118 +  -3.7  -3.54029   GAGACGTGCCGTCCT               CCCCG CTCT CGGGA                TTGTCATTGATGGGC  50 63
JRI60_RS02315 NONE
JRI60_RS02320  534178 ..  534193 + -10.4  -2.76313   GCGGTCGTCCAGAAC              CCGTCG GCGA CGACGG               TGCTCTTCACGTTGT  57 121
JRI60_RS02340  538192 ..  538214 +  -3.2  -3.66018   CCCTCCCCGAGGGGA           GAGGGCGCTC GCG GGGCGACTAC           TTCTTCGCCTGCTCC  53 52
JRI60_RS02350  541255 ..  541272 +  -2.6  -2.71791   CCGAGGAGTCGTTGA             CACACC GTGCCG GGAGTG              ATTTCCGGCGGGCAT  38 217
JRI60_RS02355  542092 ..  542117 + -13.3  -3.14881   CCACGCGCAGCTCGC         CGCCCTG-GGGC ATG GCCTGCAGGGCG         TTGGTGAAGAGGTTG  67 319
JRI60_RS02365 NONE
JRI60_RS02370 NONE
JRI60_RS02375 NONE
JRI60_RS02380 NONE
JRI60_RS02385  547517 ..  547542 +  -5.3  -2.71763   GCGTCGCACCACGCC         TCCGTGGCGCT CCAG GGCCTCGCGGA          TGATCTCCTTCTCCA  44 125
JRI60_RS02395  550276 ..  550319 +  -3.6   -3.1582   CTGCTGGCAGTAGCG CGGGCGCAAGCTTTGCGCCTC GGT GAGGCGCGG-GCGCGTGCAGG ATTTTCGTCCCGTGG  45 28
JRI60_RS02400 NONE
        rnhA NONE
JRI60_RS02410  552284 ..  552308 +  -7.8  -3.53091   TCGCGGGACTTGAGC         TTGCCGGC-GG TCAA CCAGCCGGCCA          TTTCGCGAGCGGCCT  58 196
JRI60_RS02420  554054 ..  554094 +  -8.8  -3.36878   TCCTGACACCTGCCC GCGACACGGGCGGGCCGGG TTGA CGCGGCGCGCCCAGGT-GC  TTATAGCTCAATAAG  60 73
JRI60_RS02425  557764 ..  557791 +  -5.4  -3.31792   CTCCTCGATGAAGTT        GACCCG-GTGGGC CTT GTCCTCGCGGGCC        TTCTCCAGATGCTCC  51 430
JRI60_RS02440 NONE
JRI60_RS02445  563036 ..  563058 +  -7.7  -4.25104   GGTCGTAGTGCCCGC          TCTCGCC-GG TGAA CCAGGCGAGG           TTTTCCTGACGGCGA  74 505
JRI60_RS02460  567294 ..  567304 +  -8.2  -2.52896   CGCCCGCCGCCCCGG                 CGGG TCT CCCG                 TCACTTCAAACCTCC  51 57
JRI60_RS02465  569389 ..  569410 +  -3.5  -3.61398   GTACTTGACGAGGGA           GGCGCGGGC CTGG GCCTGGACC            TTGTTGCGCAGGAAG  53 79
         def  570738 ..  570794 +  -8.4  -3.05384   TCCAGGGAAGTCCAG GTCGTTCCAGGCGCCGATGCCGCCGA AGACA TCGGAGGCGGCGGCGCAGAGGGCGAG TTGGATGGAGGGGGA  54 270
JRI60_RS02485  572693 ..  572710 +  -5.5  -2.71681   CCCTACGAGCGGAAC             CGAGAGC AATC GATCTCG              TACTTGGAGACCTTG  45 154
JRI60_RS02495  575751 ..  575806 + -16.1  -4.62069   TCCTTGGGGTAAGGA GGCG-CGGGCCTGGCGGGCGGGAGGT GTCGG GCTTCCCGTCCGTCGGGCCTGGCGTA TTTTTAACCTCGAGG 100 56
JRI60_RS02505  577616 ..  577653 + -22.1  -3.63744   CGGAGCGTTGAAGTC   CGAGCGGGTCGCGGGGAG TCA CTCCC-GTGGCCCGCTCG   TCTTTTGGGCCGGGG 100 55
JRI60_RS02510  578308 ..  578335 +  -5.5  -3.29144   AGAGACTCTGATCAA        GGGTGACCC GAGACGCGAG GGGTCCCCC         TTGTGCCGGGCCTGA  51 111
JRI60_RS02515  581372 ..  581424 +  -4.2  -4.43576   AGGGGCCGCCTGAGC GCTCACCGGACGTCCGTGGGTCAGGC GGTGG GCCTG-C-C-CGG-CGAGTGGTGAGC TTTCTTGTATGTCCT  68 85
JRI60_RS02520  584193 ..  584219 +  -5.1  -3.60234   GTGCACCAGCCACTT        CGGTGGCCTAGG TCGA CC-AGGTCAACG         TTTCGCAGTCTGTCA  54 83
JRI60_RS02525 NONE
JRI60_RS02530  584541 ..  584564 +  -4.6  -2.94708   GATCAGCTCCACAAG          TTTTCCAATC ACTG GATTGGAAGC           GTTCTTTGACAAGTG  45 28
JRI60_RS02535 NONE
         rrf  588040 ..  588086 + -20.2  -3.59247   TCGCTGCCGGATTTT TTTGAAGGCCCCGAGTCCTCAC AAC GTGAGAACTCGGGGCCTTCGCC TTTGCGGGCTTCTTC 100 29
JRI60_RS02545 NONE
JRI60_RS02550 NONE
JRI60_RS02555 NONE
JRI60_RS02560 NONE
JRI60_RS02565  594187 ..  594197 +  -2.4  -2.91912   GATGGGGAGCAGACA                 GCCC CGC GAGC                 TCTATGGCTGAATCG  40 72
JRI60_RS02570  597060 ..  597084 +  -7.8  -3.53444   CTGTTTGGTTTTGAG          GGACCGAGTC CAAGC GACTCGGCTC          TTTGAAAGAGAGTAG  60 147
JRI60_RS02575 NONE
JRI60_RS02580  597344 ..  597367 +  -4.6  -2.94708   GATCAGCTCCACAAG          TTTTCCAATC ACTG GATTGGAAGC           GTTCTTTGACAAGTG  45 28
JRI60_RS02585 NONE
         rrf  600786 ..  600832 + -20.2  -4.14739   CGCTGCCGGATTTTT TTTGAAGGCCCCGAGTCCTCAC AAC GTGAGAACTCGGGGCCTTCGCC TTTTCGAATCACTGG 100 30
JRI60_RS02595  601683 ..  601712 + -10.7  -3.71378   TCGTCCATGCCCCCT       GGGATAACCCGGC CTTG GTCGTGTTGTCCC        TTTCCGTGTCCGCTG  73 281
JRI60_RS02605  602150 ..  602172 + -15.6  -3.29144   GATACCCTCACCCCG           TCCCTCTCCC GAA GGGAGAGGGG           TTGTGGGGGACATCA  80 139
JRI60_RS02620  606223 ..  606234 +  -5.8  -2.92192   CTCGCCCTGCTCCAG                CACC CGCA GGTG                 TCTCATTCCCTCCAC  46 386
JRI60_RS02630  606890 ..  606914 + -12.1  -4.91987   GTAGACCCTCACCCC          GTCCCTCTCCC AGG GGGAGAGGGGG          TTTTGTTCTTCCCTT 100 217
        glpD NONE
JRI60_RS02640  610770 ..  610821 +   -24  -3.31461   TGATGACGGGCTTCA CGG-ACTGGCGCGG-CGC-TCCCGT TTCCC ACGGGATGCGACCGCGCCAGTGCCG TTCTCCGCCTCAGTG 100 42
JRI60_RS02655  613452 ..  613490 +  -6.7  -3.28712   TCCCATTTCGCCCGG  TGCT-GGCGACGGTTGCCC GAG GGG-GGCCGTCGCCCAACG  TTCTACAAGAAGAAG  54 157
JRI60_RS02660  614344 ..  614366 + -10.5  -3.14931   GCGGACTCGATAGGG           GAGGGGGCC TGAGC GGCCCCATC           TTCGTGGAGGGTGAA  62 28
JRI60_RS02675  617736 ..  617777 +  -9.4  -3.11634   CAGGTCCACGTCGAG CC-TCCG-CGCCCGGGC-CGC CTC GCGGGCCCGGGTGATGGCCGG TTCCATCATGTCCAC  57 378
JRI60_RS02695  621261 ..  621282 +  -3.5  -3.57144   CGCACACATGGTAGG           GGCGCGGTC AACG GGCCGACCC            TTTCCCCATGGCCCG  51 64
JRI60_RS02700  622552 ..  622574 +  -5.4  -3.59979   GCTGCTTGGTGCGGT           GATCCCTCAC GAT GGGGGGGCTC           TTTCGCGTGGGCACG  54 82
JRI60_RS02710  624289 ..  624301 +  -4.7  -3.24747   GACGAGGGGGCCACA                GCGGG CGG CCAGC                TTCATGATGTACCAG  47 481
JRI60_RS02725  626350 ..  626368 + -11.6  -3.13522   CCGCGCGGCGGCCAT             GACGCGCG GTT CGCGCGCC             TATTCCTCACCGGCT  66 24
JRI60_RS02745  629762 ..  629791 +  -2.2  -3.04517   CGCCAGCAATTGAGC      GGCAGTCGCGTCAT GGCC ATGTC-CGA-TGCC       ATTTTCGCCACGAAT  41 28
JRI60_RS02750  632306 ..  632322 +  -3.7  -3.06302   CACCTCGCGAAGGGC              TCCAC CGGGGAA GTGGA              TTCCCTGGCCGTAGT  43 433
JRI60_RS02760  635098 ..  635110 + -10.5  -2.89881   TCCGGCTCGGACGGA                CCCGG ACT CCGGG                TCTGTACCCTCCGTG  59 57
JRI60_RS02765 NONE
JRI60_RS02770  636858 ..  636875 + -11.3  -3.01712   GCATGTATTTGCTGT             GCGTGAG GATG CTCACGC              TCTTGAGCGCCGGGC  60 182
JRI60_RS02785  639544 ..  639557 +  -3.7  -3.24032   ATTGAGACGGTGTCT               TGGCC AATA GGCCC                TGTTCATTCGCGGCT  47 135
JRI60_RS02790 NONE
JRI60_RS02795  641424 ..  641452 +  -5.2   -3.4072   TGGCGACGAGCGAGG       GCTCGAGGATGGC GGGC GCCTTGC-CGAGC        TTCTCGTAGACGATG  51 351
JRI60_RS02825  648361 ..  648411 + -16.9  -2.62983   ATCTGGTGAATGTGT GACAGAGGGCCCACTGCGCTGGCG GACC TGTCAGCGCAGTGGGTCA-CCGTC TAGTCTCCGCGTCGC  80 24
JRI60_RS02885  662429 ..  662441 +  -4.8  -3.03159   TGAAGGTGCTGGAGT                GAGG AGGGC CCTC                TGTTCACACGGTTGG  45 24
JRI60_RS02890 NONE
JRI60_RS02900 NONE
JRI60_RS02905 NONE
JRI60_RS02910 NONE
JRI60_RS02915  668916 ..  668926 +  -6.8  -3.36327   GCGAGGCCGTCATCT                 CGTG CTG CACG                 TTCTCCATCCACTCG  56 255
JRI60_RS02955  681028 ..  681043 +  -2.5  -3.38812   ACGCGCCTGTGCTCC              GCTCG CGGCCA TGAGC               TCTTCTTCCCGACGC  46 68
JRI60_RS02960 NONE
JRI60_RS02965  683211 ..  683224 +  -5.9  -3.29511   CATGACATCCAGGCG               CTCGC CTTC GCGGG                TTATGGCGAGCTCCG  53 91
JRI60_RS02970 NONE
JRI60_RS02975 NONE
JRI60_RS02980  689833 ..  689854 +  -6.5  -3.30159   GCAGCCCTTGAGGCC           GC-GCAGGCC CTC GGCCTGGAGC           TTATCCAGCGCTTCG  53 356
JRI60_RS02995  691970 ..  691982 + -10.5  -2.52987   TCGGGTTCCTCGGAT                GCGCC GTG GGCGC                CTTCATCACTCTTGC  56 399
JRI60_RS03025  695155 ..  695206 + -21.7  -2.74461   TTCGCCGGAGTCCCT CC-AGGGGCCAGGCTCG-CGGGGCG CGGA TGCCCCGACGGGTCTGGCCCTTCGG CTTTCCGGGTCCGTG 100 49
JRI60_RS03030  696798 ..  696856 +  -9.3  -2.53271   CCCCGAGCGTCGCTG GTTCCCGTGCACGCGTCCACGGACGGGC AGTG GCTCGCCCCCCGCCTCG-GCACGGGAGC GTGTTGTAGCCATCC  54 408
JRI60_RS03040  698005 ..  698047 + -23.5  -3.34398   CCTCGCGCCAGCTCC CAG-ACGCCCCGGATCGGCC GAGC GGCCGGACCGGGGCGTTCTG TCTTTCGAGGCCCCC 100 45
JRI60_RS03045  699516 ..  699545 +  -8.5  -2.78384   CGTGGCGCAGGCTCT       CCTTCCCGG-GGAG CGG CGCCACCTGGAAGG       TGTCCTCCAGCCCCG  51 64
JRI60_RS03075  710813 ..  710855 +  -6.9  -3.11634   GCGCAGGGCCGGTTC TGAGGCGGGACGGACGGAGC GCGT GAGTTG-CCGTCCTGCCTCG TTCCCTCCTATGACG  52 23
JRI60_RS03080 NONE
JRI60_RS03085 NONE
JRI60_RS03090 NONE
JRI60_RS03095  715522 ..  715540 +  -6.6  -2.97513   GCTCCGTGCTGGAGC             GCGGGAGC CAG GTTCCCGG             TGTAGTTCTCGATGT  48 432
JRI60_RS03105  716680 ..  716702 +  -7.6  -3.14564   AGGGTACATCCACGG           GCCCTCGGAC TCT GTCCAAGGAC           TTCGTGGACCACTCC  54 204
JRI60_RS03120  720504 ..  720526 + -15.6  -4.15654   GATACCCTCACCCCG           TCCCTCTCCC AGA GGGAGAGGGG           TTGTTGTTGTTGTTG  93 70
JRI60_RS03135  723782 ..  723796 + -11.4  -3.10732   GGGTTTCGACGTCCT               GCGCCA TGG TGGCGC               TCTTCACATTGGTGT  66 203
JRI60_RS03145 NONE
JRI60_RS03150  727612 ..  727653 +  -4.4  -2.92475   CACTCGCCGCGTCAT GT-GTCCTCGG-GGGCGC TGGTCGAT GCGCCCACCACGGACCAC CTTTGTGCGCATGGA  44 113
JRI60_RS03155 NONE
JRI60_RS03160 NONE
JRI60_RS03165 NONE
JRI60_RS03170  731163 ..  731175 +  -6.2  -3.41051   CGCGTAGTTGCCCAC                GGGC TCGCC GCCC                TTGTCGTACAGGTCG  55 75
JRI60_RS03185  734602 ..  734622 + -15.5  -3.14132   CGCGAGCCGGACGAA            CTGGTCCGA TTG TCGGACCAG            TTGCTCCCGAGCGCG  78 94
JRI60_RS03200 NONE
JRI60_RS03205 NONE
JRI60_RS03210  738899 ..  738920 + -10.8  -2.82516   TAGCGCAGGCCCACG           CCGGCGGG CACGTA CCCGCTGG            TGTCATCCTGGAAGC  57 188
JRI60_RS03220  739976 ..  739986 +  -5.4  -3.06796   TCCCGGACTGTCGGG                 CATG GCA CATG                 TTGGCTGGAATGCGG  47 125
JRI60_RS03225  743667 ..  743685 +  -5.8   -2.9914   CGCCGGGGCTGTGCT             CGACGACG ACC CGGCGGCG             TGTGTCTGCCCGGTC  47 64
JRI60_RS03235  745674 ..  745701 + -11.2  -3.32993   TTAGGGCAGGGGAAA        GCCCCGGGGG CGAGAGGA CCACCGGGGC         TTCGTGTGTGACTCG  66 37
JRI60_RS03260  751724 ..  751734 +  -2.4  -3.01712   GGCACGGCGGCGCGT                 GCCG GCT CAGC                 TGTTGGCACGCGCCG  41 41
JRI60_RS03270  753683 ..  753703 +  -5.3   -3.1739   TCCGGGAGAGGGCCG            GGGTGAGGG TAC CCGTCACCG            TCTTGACTTCGTGTC  49 20
JRI60_RS03275  754476 ..  754493 +  -4.7  -3.25653   GGACACGGCCAGCGG             GCGGGGC AGCG GCCTGGC              TTGACTTGGTGTTTT  49 47
JRI60_RS03280 NONE
JRI60_RS03285  757297 ..  757319 +  -4.9  -3.41745   TCCACTCTGATTTGA           CATGGTGTT GTTTG GACACTATG           TTGGTGTTGTCGGAA  51 74
JRI60_RS03290  758496 ..  758531 + -11.8  -2.63596   ACCCTCGATACCCTC    ACCCCG-ACCCTCTCCC GAA GGGAGAGGGAGTGGGGA    TCCTCTACCCTCACC  61 52
JRI60_RS03295  759382 ..  759419 +  -6.1  -3.61103   CAGCCGCACCGCCCT   CGGCGGCTTCGGGGCCTG ACC CCTGCCGTGGAGC-GCCG   TTTCCGGTACCCTTC  56 7
JRI60_RS03300  761499 ..  761536 + -13.4  -3.16683   TAAACACGAGCAACC   GTGGGAGTGGGGGGCCG CTGCT CCGCCTCCC-CTCCCGC   TTCGTCGGATGCCCT  72 38
JRI60_RS03305  763513 ..  763525 +  -5.5   -3.0263   AGGGTGGTGCCCCCG                GCGGT GCC ATCGC                TCTTCCACAACTCGT  47 351
JRI60_RS03330 NONE
JRI60_RS03335  772313 ..  772327 +  -8.5   -2.9675   CCGCGGCACCTACTG               CGCGC AGTAG GCGCG               TGTGATTCTCCACTC  55 16
JRI60_RS03340  772974 ..  773027 +  -8.6  -2.52896   CGCCCGCAACACCCC GGCCTTGGGGCAACTG-GGCCGAGC GGTGA GCGCGGCCTCGGCCACCTCCAGGCC TCGCTTCAGCAGTGG  50 224
JRI60_RS03350  777714 ..  777739 +  -4.5  -2.70932   GCAGTCCCATGTAGC         CCACGTCCACC TGGA GGATGACGCGG          TCCTTCAGCACGCCG  42 367
JRI60_RS03385 NONE
JRI60_RS03415  791877 ..  791888 +  -4.4   -3.1994   CGAGCGCCTCTATGA                GTGA TGGC TCAC                 TTCATCCATCGTCTC  47 90
JRI60_RS03420 NONE
JRI60_RS03430  802442 ..  802452 +  -4.6  -3.37796   GGGACGAAGTAGGGC                 CGCC GCT GGTG                 TTGTGCGTGGTGGGC  49 204
JRI60_RS03470  817521 ..  817532 +  -2.2  -3.58801   CTCGGCGGCGCGACT                GGAC TGAG GTTC                 TTTGACACCTTCTCT  48 19
JRI60_RS03475  819349 ..  819372 +  -5.2  -3.06492   CGACCAGCTTGCGGG          CCGTG-GCGTC ATG GGCGAACACGG          TGTTGGGATCCGTGC  47 389
JRI60_RS03485 NONE
JRI60_RS03490  824746 ..  824777 +  -2.8  -3.44206   CGAAGGTAGGAATGC      CCCTCACGCC-GAGC TGG GCGGAGGCCTGGGGG      TTCTCATCGGTGTTC  48 172
JRI60_RS03500  826648 ..  826671 +    -3  -3.35679   AGGCGTCGTCTGGCG          TCGCGGTGGGC TCA GCCC-CGGGGA          TTGTCCGTCCGGGGC  48 39
JRI60_RS03530  832834 ..  832855 +  -5.8  -2.78384   CCCAGGAAGGTGCGC           GCCC-CGGC CGGAC GCTGAGGGC           TGTCGTCCGCAAGAC  45 8
JRI60_RS03535  833409 ..  833422 +  -9.5  -3.29144   CGGGCTTGGCGGCGA               GCGCG GCGG CGCGC                TTCTGGACGAGCTCG  61 205
JRI60_RS03545 NONE
JRI60_RS03550  836721 ..  836740 +  -2.1  -3.21924   TCCCCGCACACTCAC            GTCGGCAC CGCTC GT-CCGGC            TCTTGTGGACGATGG  44 350
JRI60_RS03560  839398 ..  839410 +  -5.5  -3.40403   CGTCGGGAGCCAATG                GCGTG CGC CATGC                TTCTCCTAGACGAGG  53 95
JRI60_RS03565 NONE
JRI60_RS03570  840837 ..  840883 +  -8.5  -2.87132   GAGCTCGAGACGAGA CCCTGACCCAAACCCCCTCTC CCTTC GGGAGAGGGACGGGGTGAGGG TATCTCGGGCCCCAG  54 20
JRI60_RS03575 NONE
         orn  843236 ..  843260 +  -7.8  -3.61398   TGCACGGCTCCGCTT         GC-GGACGGGC GTGC GCCGGTCCAGC          TTCTTGCGCCGGGGG  60 400
JRI60_RS03600 NONE
JRI60_RS03605 NONE
JRI60_RS03610  848546 ..  848559 +  -3.1  -3.53012   GGAATGGTAATCTGC               TCTCT CTCC AGGGA                TTTCCCCCACCCCCC  49 84
JRI60_RS03615  848988 ..  849013 +  -4.5  -3.29144   CGAGGAGGAGTTGCT         CTCGGCCTGAG CACC CTCCGGGCGCG          TTCTCCGCCAACTGG  49 16
JRI60_RS03630 NONE
JRI60_RS03635  855472 ..  855516 +  -4.7   -3.0814   GTTCCTCGGGTTGAA CCCGTGCATGTCCCCTCTCCC TCT GGGAGAGGGCTAGGGTGAGGG TCTTCCCATGTCCGT  47 93
JRI60_RS03640 NONE
JRI60_RS03645  858914 ..  858929 +    -9  -3.17146   TCCACGCCGATGATG              TCCAGG TCCG CCTGGA               TCTGTTCTCGCAGCC  56 423
JRI60_RS03655  863013 ..  863024 +  -2.2  -3.06696   GCAACTGGGACTCGA                G-GGC AAC GCCAC                TGTGTTGAAGGACAC  41 81
JRI60_RS03660  864941 ..  864951 +  -8.2  -3.47227   CCTTGCGCGGAGCCG                 GCGC GGT GCGC                 TTCTGGTACTTCGGC  61 212
JRI60_RS03685  870242 ..  870267 + -11.8  -3.30124   CCATGTTGATGGACA         GCGGTGCGCC GCACGA GGGGCACCGC          TTGTCCGCGCTCGGC  67 178
JRI60_RS03705 NONE
JRI60_RS03755  886360 ..  886408 + -17.5  -2.87501   TCAGGTCGTCCTTCA CGGGCCATCC-G-GTTCCACCCC TCGCC GGGGCGGAGCGCCGGGTGGCCCG TCGTCTTTCCTCCAC  82 50
JRI60_RS03760  887607 ..  887630 +  -9.4  -3.32268   TTGTTCGTCTTCGAA          CCCGGCGGCG CCGC CGCGGCCAGG           TTCTCCCCGTGCTTG  61 295
JRI60_RS03770  889193 ..  889235 +  -7.4  -3.01791   CGGTGGGCCAGCGCC CTCGCCCGGAGGAAGCAGCG CAG CGCCTCGTCCTCCCGGCCCG TCTTCCGGAGCAGCT  52 222
JRI60_RS03790  897928 ..  897940 +  -4.7  -2.78384   AGGCCGCGGCTCGTG                GGCGC GGA GAGCC                TCTCCTGGCGGAAGA  42 440
JRI60_RS03800  900029 ..  900045 +    -3   -4.0802   AGTTCCGCTACATCC              GGATTC TTCTT GAATTC              TTTGCTTCTTGGAAT  59 67
JRI60_RS03805 NONE
JRI60_RS03810  901384 ..  901398 +  -2.7  -3.01924   GCGCCTGTGAGTGAA               GGCGC GGTGG GCCCC               TCTTGGGGGAGAATG  42 31
JRI60_RS03815 NONE
JRI60_RS03820  903580 ..  903596 +  -9.3  -3.38991   GGTGGTGCGGGTGCG              GCCGGCG ATG CCCCGGC              TCTTCTTGAGGGCGT  63 339
JRI60_RS03850  906446 ..  906456 +  -4.6  -2.90078   CGGGCACCGGCGGGG                 CCCG GGC TGGG                 ATTTCGTGTCGCCTC  44 70
JRI60_RS03855  909365 ..  909384 + -13.6  -2.59447   TGTCCGCGTAGCGCT            CCACCTGG CGCG CCAGGTGG             CTCTTGTCGTTGCCC  65 228
JRI60_RS03865 NONE
JRI60_RS03870  912733 ..  912787 + -11.3  -2.70932   GGCGATGGGGACGGC CCAGGCGGCGAGCGCGAGCGCGGCGAG TAC CTCGCC-CGCGAGGGTGCGCT-CCTGG TGGTTCCAGGCGAGC  57 402
JRI60_RS03880  914062 ..  914092 +    -6  -3.30124   TGTGAAGCATGGCCA       CTGCGGGAGCCGGA TCG TCCGCATGTCGCAG       TTGTGGAAACTGCAC  51 304
JRI60_RS03905 NONE
JRI60_RS03910  919885 ..  919919 +    -2  -3.28712   CGGCGCGAGGCAGGC    GCTCGCGCCTCCACC CGGCGA GGTCC-GGCACGAGC     TTGTCGGGCCGGGGG  45 328
         map  924775 ..  924816 +  -8.7  -2.52834   CAGGTCGCGGATCAT CCGGCTGGCCCGC-TCCGC CGCGGC GTGGATGCG-GCCGGCCGC CTTCGTGGTGCGCTC  50 525
JRI60_RS03950 NONE
JRI60_RS03955  930945 ..  930977 +  -3.4  -3.38046   GGGCCCGTGGATGTC      CCCTCTCCCT CTGGGAGAGGGCT AGGGTGAGGG      TCTTTCGCCTGGGAA  48 89
JRI60_RS03975  935505 ..  935543 + -11.7   -2.5474   TCCTGCTTGAGCAGG  TGCGCGATGAGGGC-CGGC GGC GCCGCGCTC-CAGCGCGCG  ATGTTCTGGATGAGC  59 141
JRI60_RS03985 NONE
JRI60_RS03990  938837 ..  938869 +  -8.3  -3.03443   CCCTGGTGTACAGGT      GCGGGGCGATGCG CTCCCGA CTCCTCGTCCCGC      TGTGTCTGCTGCTGC  55 42
JRI60_RS03995  940767 ..  940798 +  -9.4  -3.28712   GATTGAGCCAGCGGA      GA-TCCCGAGAGCGG GGA TCGCTCGCGGGGGTC      TTGTCCAGGCCGAAC  61 316
JRI60_RS04015  946257 ..  946297 +    -3  -3.08798   GGTGCACGGAGCCGC CGAGCG-GCCGGGGACGCT GTGG GGCGGCCCCTGCATGCCCA  TCTTCAATCGGGCCT  44 428
JRI60_RS04025  946867 ..  946885 +  -4.4  -3.35679   GTAGAACGGGTCGTA             CCACGGGT CGT ACCAGGGG             TTGTAGATGCCCCCG  49 275
JRI60_RS04075 NONE
JRI60_RS04080  956869 ..  956881 +  -3.3  -3.35679   GAAGGCGGAGACGGC                GGAGC TCC GGTCC                TTGTCGCTGGAGCCG  47 416
JRI60_RS04100  963101 ..  963120 +  -5.7  -3.54676   TCCTCCCTGCATAGG            GGAGGTG CGCCAT TACCTCC             TTGCTTTGAATGGAT  54 303
JRI60_RS04105  965158 ..  965195 + -21.3  -4.07568   GGTTTCGCTGAGTCA   TC-GAGGGGCCGCTCCGG ACA CCGGGGCGGCCCCTCTGC   TTTTCACAGACACCC 100 65
JRI60_RS04110  967543 ..  967586 + -18.2  -2.71712   GAGTCCCTGAAATCA TCG-AGGGGCCGTCCCGGT CATTTCT ACCGGGGCGGCCCCTGCGC CTTTCCAGCGGACAG  85 60
JRI60_RS04115  968407 ..  968423 +  -7.9  -2.70932   GCATGGCCAACATCT              GGCCGTC CGC GACTGCC              TCCTTCCCAACGACC  51 374
JRI60_RS04120  969238 ..  969258 +  -3.8  -3.70902   CGGAAAGTGAGCCCG            GGGCGCGG AAGAC CCTCACCC            TTTCCCTCTCCCAGA  54 31
JRI60_RS04150  976471 ..  976491 + -10.4  -3.01712   GGACGGGGTGCTCGC            GGACGGGC CACGC GCTCGTCC            TGTTGGCCAGAGGCG  60 78
JRI60_RS04155 NONE
JRI60_RS04160  978321 ..  978349 +  -2.9  -3.31144   CCTCCACCAGACGCG        CGCCGCGCGCCAG CGT CTCCTGCGTGGCC        TTGTCGAGGTCCGAG  45 463
JRI60_RS04180  984002 ..  984021 +  -3.4   -3.9461   CCAGGAAGAGCTGGT            AGTAGCCC GGCG GGGCCACG             TTGTTGTTCGCCGGA  59 119
JRI60_RS04190 NONE
JRI60_RS04195 NONE
JRI60_RS04200  989910 ..  989927 +  -7.7  -3.26722   GCCGCCGGAACACGT             TCGGGTT CCTC AGCCCGA              TGTTGTACGTGTGGA  54 365
JRI60_RS04215  992321 ..  992344 + -10.2  -2.82623   CCTGATACGTGCCCG          GCTGGCTGCC TCAG GGCAGCTCGC           TCCTTCTCGCGAAGG  59 36
JRI60_RS04225 NONE
JRI60_RS04230  995670 ..  995687 +  -4.1  -2.64794   CACCAGGGGGACGTG             CCC-GTGT CGG GCACCGGG             TGATGTAGGCTTCGC  40 49
JRI60_RS04235 NONE
JRI60_RS04240 NONE
JRI60_RS04245 1000881 .. 1000899 +    -3  -3.36492   CAGAAGCCCCGGCTC             GCGGGG CCCTCCA CCCCGG             TTCTCGCCTTGCGGG  48 73
JRI60_RS04250 1001694 .. 1001714 +  -3.2  -3.31322   GCTCGTGGACCGATG           CGGGCG-GT CCGG ACGCACCCG            TTATGGGGGGTTGGG  46 501
JRI60_RS04260 1002418 .. 1002449 +  -3.4  -3.31188   GCTGCCTTGCAGAAG      CGCTAGCGGGCAGG CGGG CCCCCCCGCGGTCG       TTCGTGCTTGTCCTG  46 20
JRI60_RS04265 1005487 .. 1005508 +  -3.7  -2.87211   TCGTTCCTCCGGGCA           TTGGCCCGTG GGT CATG-GCCGA           TCTCTGGCGGGCCAT  43 81
JRI60_RS04270 1007509 .. 1007545 +  -4.4  -3.02461   GCGCACACGGCCTGA   CGCTC-CCTC-TCCCTCT GGG AGAGGGTCGGGGTGAGGG   TCTTCCCACCCGTTC  45 26
JRI60_RS04275 1008615 .. 1008634 +  -9.2  -3.28924   CCGGCGCCCCGCGCA            CGTGCACC ACCC GGTGCTCG             TTCTGCAGCACCGTG  58 491
JRI60_RS04295 1011296 .. 1011306 +  -6.8  -2.62616   CCTGCCGGCGCTGCG                 CGTG CTG CACG                 TGCTCTGGGCGCTGC  47 176
JRI60_RS04300 1012040 .. 1012052 +  -6.2  -3.61652   CTGAGCCGCACCCGG                GCCG CTGAT CGGC                TTCCTTCTTTCAAGG  56 37
JRI60_RS04305 NONE
JRI60_RS04310 1013860 .. 1013887 + -18.4  -4.23781   TTCGTGATTCACCGG        CCGGCGCTCCCT TCCT GGGGGGCGCCGG         TTTCGTTTTGGTGCA 100 57
JRI60_RS04315 1015618 .. 1015640 +  -9.8  -2.57721   GGCTGCCCGTTGTCT           CTCCGCCG TGGTGTC CGGCGGGG           TACGTTCCTACCTTC  57 111
JRI60_RS04320 1018473 .. 1018505 +  -6.2  -2.94747   AGGAACCAGGTTGGA      CCCTCTCCCCCT GGGAGAGGG ACGGGGTGAGGG      TATGTCGTGGACTCG  49 160
JRI60_RS04340 NONE
JRI60_RS04345 NONE
JRI60_RS04350 1024812 .. 1024822 +  -2.4  -3.14132   GGGACACGGTCCTGA                 GCGG GAA CCAC                 TTCGTGGAGGGGGAC  42 26
JRI60_RS04355 NONE
JRI60_RS04360 1028307 .. 1028319 +  -6.9  -3.40163   GCAGCTCGGATTCGG                CGCGG TCG TCGCG                TTGCTCTTCGTCGTC  56 136
JRI60_RS04365 NONE
JRI60_RS04370 NONE
JRI60_RS04375 1031772 .. 1031789 + -10.5  -3.44229   GCGAACTGCTCCCGG             GCGGCGT TGTA GCGCCGC              TTGTCCTCCTCCGGT  66 406
JRI60_RS04400 1036976 .. 1036990 +  -5.6  -3.40403   GGTTCGATGAGCTCC               GGAGGC GTG GCGTCC               TTGTCATCCGCCACC  51 57
JRI60_RS04410 1039344 .. 1039376 + -19.1  -2.60075   GGACGGATACCCTCA      CCCCGACCCTCTCCC GGC GGGAGAGGGAGGGGG      ATTGATTACAGGGAC  87 59
        crtI NONE
JRI60_RS04455 1051999 .. 1052010 +  -5.8  -3.15544   GGCGATGCACGCCCA                CCTG TGCC CAGG                 TTGGTCCCCCTGGCC  49 362
JRI60_RS04465 1053463 .. 1053501 +  -2.4  -3.04263   GGTGGCGCTGCGCGA  GTGTCGCGAGGAT-GAG CGTGCC CTCCATCTGCGCGAAGC   TGTTGCCGATGCACT  41 157
JRI60_RS04475 NONE
JRI60_RS04480 1055832 .. 1055871 +    -4  -3.53811   CGATGCACCCGGCTC  TCCACT-CGCCCGGTCCGC TCG GGGGGCCTGGCGCGGAGGC  TTTCGGGGCGGTGCC  51 113
JRI60_RS04485 NONE
JRI60_RS04490 NONE
JRI60_RS04495 1058088 .. 1058104 +  -7.3  -3.10245   AAACTGTTTTGAGGT              CATCACT CCA GGTGATG              TCTGTCTTCACGTGC  52 71
JRI60_RS04500 1059462 .. 1059476 +  -3.5  -3.14564   CGCCCTGGTGCCGGA              CGC-CG AAGC CGAGCG               TTGATGCGACGCTGA  45 7
JRI60_RS04505 NONE
JRI60_RS04510 1062512 .. 1062523 +  -5.8  -2.57132   CGCCCCCGTCTGTCC                CTGC TCGA GCAG                 CTTCTGGCCGGCCGC  43 378
JRI60_RS04520 1064531 .. 1064542 +  -5.8  -4.15106   GGACCCGCGCGGGGG                CAGC AGTG GCTG                 TTTTCGAGCTTCCTC  64 117
JRI60_RS04530 NONE
JRI60_RS04535 NONE
JRI60_RS04540 1068663 .. 1068704 + -15.1  -4.62872   TGGTACGGGGGAAGC ACGTCGGGAAGGGGCCGCT GGGG GGCGGCTCCTTCCCGATTC  TTTTTAGAAGTTGGT 100 464
JRI60_RS04555 NONE
JRI60_RS04560 NONE
JRI60_RS04565 1072438 .. 1072478 +  -9.6  -3.06796   CGCTGACGTGTCAAC GC-CCCGGGCTGACATGTC AGCC GGCACGCCAGCACGGGCGC  TTCCCTCCGGTCCAG  57 69
JRI60_RS04570 1074599 .. 1074642 + -25.4  -4.96848   AGCGGCCCGAAAACA CCAAGGCCGGAAGCCCCTGA GCGC TCAGCGGCTTCCGGCCTCGG TTTTTGTATCCCCGA 100 46
JRI60_RS04575 NONE
JRI60_RS04580 1076539 .. 1076582 + -19.6  -3.06708   CGGGGCCCGAAAACA CCAAGGCCGGAAACCCCTGA CGAA TCAGCGGCTTCCGGCCTCGG TCTGTGTGTCCCTTC 100 94
JRI60_RS04620 1082515 .. 1082525 +  -5.4  -2.52676   GGAATGCAAAGGGTG                 GGAA GCG TTCC                 TAGGTTGGGAAGGTA  44 78
JRI60_RS04625 1083442 .. 1083469 +  -5.4  -3.32343   GGTGTTGAGGCGCTT        GCACTGCTGTCC CTGG GGACATCCGAGC         TTCTGGCAATCTGGA  51 352
JRI60_RS04640 1088056 .. 1088074 +  -9.5  -2.80779   GTCGGGTAGACAACG             GCTCGGG CGCTA CCCGGGC             TGCTTGGGTTCTCGT  56 143
JRI60_RS04645 1089450 .. 1089482 + -11.4  -3.01791   GGTCGCGGATGACGC     CGAGCCAGTACT-CG CGCC CGTAGTACTGGCTCA      TCTTCCCGAGCAGCT  63 73
JRI60_RS04665 1092994 .. 1093019 +  -7.5  -2.52635   AGTTTCCGGGTCTCG         GGGGCGAGGATG ATG CG-CGTCGCCCC         GTTGCTGCTCGCGCT  48 137
        atpG NONE
        atpD NONE
JRI60_RS04700 NONE
JRI60_RS04705 1099383 .. 1099436 + -18.1  -3.85698   CCTCCGGGAGAGGGC TGGGGTGAGGGTATCTCGGGTCCCG AGTT CGGGGCCTGGGATGCCCTCTTCGCG TTTCTGGGCCCCCGA 100 71
JRI60_RS04710 NONE
JRI60_RS04715 NONE
JRI60_RS04720 1101411 .. 1101428 +  -8.3  -2.52543   CCTACTTCCTCAAGC             CCGCGGC GGAC GCCGGGG              TGGGTTGAAGGGGCT  51 0
JRI60_RS04725 1101704 .. 1101714 +  -4.6  -3.27475   CGGTCGCGACGCGTA                 GTCG ACT CGGC                 TCTTGTGGTGGGAGC  49 25
JRI60_RS04730 1102937 .. 1102947 +  -5.4  -2.89564   TTCCGGCGGTCAGAC                 TTCC CCA GGAA                 TGTCTCCGCTCCCAC  46 98
JRI60_RS04735 NONE
JRI60_RS04740 1103982 .. 1104013 +   -18  -3.10894   GGGCCGGACGGTGGA      CACGGCACCCTCCG GCGA CGGGGTGTGCCGTG       TTCAGTGCTGGTGAT  86 47
JRI60_RS04745 NONE
JRI60_RS04750 NONE
JRI60_RS04755 1108343 .. 1108374 +  -3.6  -3.31461   GCGAGGCGGAGAAGA      GCGGCGAGTTCCGAG CGG CTTGAGCCTCG-CGC      TTCTCGAGCTAGGTG  47 3
JRI60_RS04765 1112380 .. 1112414 +  -7.1  -3.71848   CCGACTCTTCGATCT    CCTCCGCCAGCGGCGT GCCG ATGCCG-TGACCGAGG     TTGTTGGTGCGCAGC  59 154
JRI60_RS04790 1117823 .. 1117868 +  -6.2  -3.63515   GTCAGCTCTCCATGC TAGCGT-G-CACCTCATCGGTG AACC CCCCGACGAGGTGGCCATGCTG TTCTTCGACCTGGAG  59 68
JRI60_RS04795 1118629 .. 1118649 +  -4.5  -3.28712   TCTTCGTCACGCACG            CACCCCGTG TAA CGCGGGCAG            TTATAACCAGAGCCG  49 141
JRI60_RS04815 1126403 .. 1126417 +  -2.8  -3.35438   TACCGGGCGGGAGGT               GTGG TAGAGGC CCAC               TTCTCCGGTCTCATC  48 80
JRI60_RS04820 NONE
JRI60_RS04825 1127705 .. 1127730 +  -5.3  -4.15006   ACGTCAGTCCGTGCA         GCGGCC-GTTCT CGC AGTCCAGGCCGC         TTTTGCAATCACTGT  64 88
JRI60_RS04850 NONE
JRI60_RS04855 1136518 .. 1136530 +  -4.7  -3.63073   CCGGGACGCAGCCCG                GGCCG TCC CTGCC                TTCTTCACAGCTGTA  55 431
JRI60_RS04870 1139795 .. 1139805 +  -6.8  -3.84406   GCGCCTGGTTCGCCA                 GCTC GAC GAGC                 TTCTTCTCGTCCCCG  62 152
JRI60_RS04880 NONE
JRI60_RS04885 NONE
JRI60_RS04890 1145455 .. 1145472 +  -9.1  -3.50853   TTCAGACTCGGGCCG             TCGTGGG ACGT CCCACGG              TTGTGATTCCAAGGA  64 57
JRI60_RS04895 1147165 .. 1147192 +  -7.6  -2.87931   ACAGGCCTTGAAGGC        GGCTCAGCCCGC CGTC GCGGCTTGAACC         TCTCTCCCCCCTCAC  52 1
JRI60_RS04900 NONE
JRI60_RS04905 NONE
JRI60_RS04910 NONE
JRI60_RS04915 NONE
JRI60_RS04920 1152488 .. 1152498 +  -8.2  -2.71681   CCGGGTGCTCGCGCA                 CGCC CAT GGCG                 TCGTTCCACCGGTTG  51 131
JRI60_RS04935 1156275 .. 1156285 +  -2.4  -3.35679   GCATCCGCTTCGGCG                 CGCG TCT CTCG                 TTCTGAGTCCAGGCG  46 9
JRI60_RS04940 1157044 .. 1157078 +  -9.1  -2.62396   AGCCAGGCGCGTGAC    GAAGGGCGGCCCGTGC GTGA GC-CGGGCCGCCCGGG     TGCTCTGACCGCCTG  54 40
JRI60_RS04950 NONE
JRI60_RS04955 1161072 .. 1161087 +    -9   -3.4072   CATGGAGCCGAACTG              GAAGCG GGGG CGCTTC               TTCTCCTCGCGGCTG  58 309
JRI60_RS04970 1163993 .. 1164024 + -15.8  -3.45023   CGGGAGGGGGAGGGA      CCTCCAGGCCGGGG TACT CCCGGGCCTCGAGG       TTCTCGTGGTCGTCG  82 53
JRI60_RS04980 1165768 .. 1165810 + -10.5  -3.62275   CGTCTTCGAGGTCAA GACGGCG-AACCGGTGAGGCG CGT CGCG-CTCCGGTCGCGCCGTC TTTCCCGTACTCCAT  67 10
JRI60_RS05015 1176687 .. 1176706 +  -3.4  -3.28712   AGGGCCCGTCCTCGT            CGAACAGG TCGC CCGGGTCG             TTCTGCCACCGGGCG  46 59
JRI60_RS05035 1180537 .. 1180555 + -14.6  -3.34609   GGGGTAATCTATCGG             CCCATGCG TCG CGCATGGG             TATTCGTTTGCCTCG  78 80
JRI60_RS05040 1183303 .. 1183340 + -17.6  -3.06796   TAATCCCGTGTGACC   CGGGCCGGGCGAGGGC CCCGCT GTCCCCGCCCGGCCAG    TTCCCTCGGCTCAGC  86 38
JRI60_RS05055 1185445 .. 1185457 +  -4.8  -3.05384   CGAAGAAGTAGGCGG                CCCT GTCCG AGGG                TTGAATGAACCCGGG  45 30
JRI60_RS05060 1185972 .. 1186008 + -19.4  -3.76224   GAGAACCCCCGTTTC    CTCGGACGCCTCGGCC CTCCC GGCCGGGGCGTTCGTG    TTTGCTGCCTCCCGC 100 54
JRI60_RS05065 1187933 .. 1187978 +  -8.2  -3.29273   GCCCCTGAGGCGGGA CCCGGGGTAGAGTCCGGGGCG TGTCT CACCAC-GATTCAACCCTGGG TGTTGTCCTGGTGCC  58 33
JRI60_RS05070 NONE
JRI60_RS05075 1191850 .. 1191894 + -18.5  -3.00298   CCCAACCCCGCCAAC TCCTCCCTCCCTCCCTCTCCC TCT GGGAGAGGGTCGGGGTGAGGG TATGTCATTCCCCGG  90 43
JRI60_RS05085 1193835 .. 1193866 +  -9.4  -3.81414   TGGGAACCTGAATCC      GGGCGCGTTGTCGGA GTG TGTGACG-CGCGCCC      TTCTTCATTGAACGT  71 55
JRI60_RS05090 NONE
JRI60_RS05095 1195026 .. 1195067 + -18.8  -3.52113   GCGGCCTGCTTCGAG CCCACGCCCCGCGCCTCGGA CTTG TCCG-GGC-CGGGGCGTTGG TGTTTCTAGGGGCAT  95 55
JRI60_RS05100 1196205 .. 1196223 +  -6.7  -3.29144   CACCTCGACCGCTCG             TCCGCAT CCGGC ATGCGGG             TTCTCGCCGAGATGC  54 475
JRI60_RS05110 1199073 .. 1199083 +  -2.4  -2.77899   AGACCAGCAGCATGG                 CGGC CAG GGCG                 TGCTTCGTGGAGGAC  39 506
JRI60_RS05120 1199978 .. 1199992 +  -8.5  -2.78384   CTAGGCCTTGCGTGC               CGCCC TTCCC GGGCG               TCTGCTAGCGCGCCA  52 37
        nadE 1202115 .. 1202130 +  -4.6  -3.06261   CGGTAACGAACTTCC              CGTCAG CCAC CCGACG               TATTGGAGGTTCGGA  45 186
JRI60_RS05130 1203216 .. 1203254 + -12.5  -5.36441   GTGGCATGACAATCC  G-GCGGCGCGGTGTCT TGGCGAAC AGGCACCGCGCCGTGC   TTTTTTCTCTCCAGA 100 56
JRI60_RS05135 NONE
        trxA 1204049 .. 1204059 +  -3.2  -3.04461   GCCTGAGATGACACC                 GAGC GCT GTTC                 TGTTCGACATGGATG  42 35
JRI60_RS05145 1204879 .. 1204892 +  -2.3   -3.4252   CCGCGGAGATGTCCT               CGAGC GGAA GGTCG                TTGTCCTCGGTGCCG  45 237
JRI60_RS05155 1208290 .. 1208315 +  -2.5  -3.53444   CCCACGGCGAGGCGT         GCTTCTCCCAGT CCA ACTGGG-GCAGA         TTTCCCCACGGGTAG  48 230
JRI60_RS05165 1211387 .. 1211410 +  -2.4  -3.53811   GCCTCGCGGCGGGAC          GGC-TAGTGGA GTG TCCACAAAGTC          TTTGGACAGAGTCCG  48 49
JRI60_RS05195 1216319 .. 1216341 +  -4.7  -3.35679   TCACCTCCTTCGCCG           GCCCGGTGC CCTGA GCGCTGGCC           TTCTGAGTACACGAC  51 12
JRI60_RS05200 NONE
JRI60_RS05205 1218313 .. 1218358 +  -7.3   -3.1082   CCCTCCCTCTCCCTT TGGGAGAGGGTCGGGGTGAGG GTAT CCGCTCCCCGGGCTGTTCCCG TGTGTTGCCTCAGTG  52 78
JRI60_RS05220 1222350 .. 1222362 +  -6.9   -3.4252   CATGCTGTGGTGATA                GGCTC GGG GGGCC                TTGTCCTCCATCGAG  56 28
JRI60_RS05225 NONE
JRI60_RS05230 1227475 .. 1227489 +  -9.2  -3.05384   CCCCTGGCCTAAGCT               GGGGGG GCC CCCTCC               TTGGATGCACCCCCC  57 64
JRI60_RS05235 1228718 .. 1228740 + -15.6  -3.79874   GATACCCTCACCCCG           TCCCTCTCCC GGA GGGAGAGGGG           TTGTGTTGTCTGGAG  90 108
        cglB 1232935 .. 1232946 +  -5.8   -2.7035   GGCGAGCTCGCGTCC                GGAG GCCG CTCC                 TCGTGTCTCGGTCCG  45 116
JRI60_RS05250 1233971 .. 1234010 + -15.2  -5.14563   GCGGGATTCCATCGG CAACGCCC-CCGAGATGC CTGGCA GC-TCTCGGCGGGCGTTG  TTTTTTGGTGGGACG 100 170
JRI60_RS05255 1234584 .. 1234613 + -19.3  -3.71848   ATTCTTATATGAAGA       CTGCCCGCCCCAG AGAA CTGGCGCGGGCAG        TTGTTGCTCAGGGAA 100 159
JRI60_RS05275 NONE
JRI60_RS05280 1239732 .. 1239742 +  -6.8  -4.07568   ACTCGCCCGGACAGA                 TGGG AGC CCCA                 TTTTCAGAGGGAAAA  67 228
JRI60_RS05290 1241899 .. 1241913 +  -4.2   -3.0263   GCGTTGGCGACTCGG               CCTTGG GCT CGAAGG               TCTTGCCCACCTCAT  45 268
JRI60_RS05300 1244851 .. 1244864 +  -2.3  -3.14881   GCGGCGATCTCCCCG               AGCGT CAGC ACGCC                TTCGTCCAGCAGTTG  44 196
JRI60_RS05310 1246341 .. 1246351 +  -2.4  -3.45784   TGTGCTCACTTTCTG                 CGGC TTG GCCC                 TCTATTTGTTGTGAG  46 348
JRI60_RS05315 1246851 .. 1246889 +  -9.9  -3.09516   CGACATCTATCCCGG  GTTTTGTTGACACCCT-TC CCC GAGAGGGTGTCAA-AGAAC  TTGAGTCATGCGGCC  62 16
JRI60_RS05320 1247991 .. 1248010 +    -7  -3.08015   GAACGAGGCTCGGGC            GTGGACGG GTAA CCGACCGC             TCTTCAAGTCATTCC  52 385
JRI60_RS05330 1249515 .. 1249533 + -12.4  -3.85698   CTACACGAGCTCGTC             GGCGCTTG GGT CGAGCGCC             TTTGTCACCGCGGAC  81 240
JRI60_RS05370 1259379 .. 1259392 +  -2.3  -3.23447   ACTGGCGGCGCAGAA               GACCA CCAC TGGGC                TCTTGTGCCCCTTGC  44 196
JRI60_RS05375 1260669 .. 1260722 +  -7.2  -3.12327   CACGCAGCCTCCTTG GGCATGCCTGCCCAGGCCGCCCTCC CATGA GGGGCGCGGCAGGGGCAT-CAGGTC TCTTGGCTGTGGCGG  52 285
JRI60_RS05435 1270678 .. 1270728 +  -5.3  -2.72745   GCCAGGGAGTTGGCC GCCAGGAGGGTGTGATGGGCAGT CGCAC ACTGTCAATCACCGCTTCAAGGC CTATTTGTCCCTGAC  45 11
JRI60_RS05440 1272085 .. 1272138 +  -7.2  -3.12327   CACGCAGCCTCCTTG GGCATGCCTGCCCAGGCCGCCCTCC CATGA GGGGCGCGGCAGGGGCAT-CAGGTC TCTTGGCTGTGGCGG  52 437
JRI60_RS05450 1275337 .. 1275349 +  -9.1  -2.73364   TATGCATAGCGCACC                CAGGC CCT GCCTG                TCGTTGGCATGCAGA  55 32
JRI60_RS05460 1276572 .. 1276607 + -10.4  -2.81547   GAAGACGCGCTGACG    CGGGTAGCCCTCACCGC GGT GGGATGAGGGCT-CCTG    TCCTTCCTATGCGAG  59 28
JRI60_RS05475 1282955 .. 1282972 +  -9.8  -3.87815   CCTTCGTTGGGCTGA             GCGCGG CGGGCC CCGCGC              TTTCTGGGGCTCAGG  74 26
JRI60_RS05480 NONE
JRI60_RS05485 1287395 .. 1287428 +  -2.3  -3.54653   GATGGCCTCCATGAG     CGTGCGC-GCACGC CCGTCAT GCAGGTAGCGCACG     TTCTGTGCTCCCCCT  48 255
JRI60_RS05495 1290573 .. 1290593 +  -3.9  -2.54896   GTGGGTGTGTACTAC            GCGGAGG CTGTATT CCTCCCC            TCGCTTGCCTCCGGA  40 101
JRI60_RS05500 1291294 .. 1291328 +  -7.1  -3.59979   AGGCACAGCCCGTTT    CG-CCGCAGGGCGCATG AAG CGTGTGCAC-GCGGGCG    TTTGCGCTCCAGGGA  58 9
JRI60_RS05505 1292408 .. 1292420 +  -5.5  -3.28924   GTGCGTCTTGGCCGC                GGGGT CGA ACTCC                TTGTCCGGGCCAATC  51 270
JRI60_RS05515 1293386 .. 1293405 +  -3.4  -4.37658   CAATGACGAGTCGGC            CCGGCTGG GCAG CCAGCGGA             TTTTCTGCCCGCGTT  66 100
JRI60_RS05530 1295293 .. 1295308 +  -2.5   -3.4252   CGCGTACACCCAGGG              GCTCT CGTACC AGGGC               TTCTGCTCGATGACG  45 81
JRI60_RS05550 NONE
JRI60_RS05555 NONE
JRI60_RS05560 1301486 .. 1301498 +  -3.4  -2.79796   ACGCGCGCCACTCCG                TGGT AGCGC ACCA                TGTAGTCCCGTCGGG  40 121
JRI60_RS05570 NONE
JRI60_RS05575 NONE
JRI60_RS05580 NONE
JRI60_RS05585 1306592 .. 1306614 +  -4.1  -3.29043   ACTTGCGCTTGACGT           ACTGGATGA TCGCC TCGTCCAGC           TTGTCGCCGCCGATT  49 498
JRI60_RS05620 1312481 .. 1312498 +  -2.7  -2.83164   GGACCCAGGGCCCCA             CCT-TCGT GTC ACGGGAGG             TGTGGTCATGGGTGC  41 96
JRI60_RS05625 1312795 .. 1312834 +  -9.3  -3.84246   ATCCGTTGGCCGAGC CCCCG-CGGACGCACGCAT GAGG ATG-GTGCGCCGGGCGGGG  TTTCGTGCTTGAAGG  71 6
JRI60_RS05630 1313803 .. 1313830 +  -8.4  -2.52464   GCAGGGGTGGCGCGA        GCCCGTCCGGAGG CAG CCTC-GGATGGAC        TCGCTTCAGGAAGAC  51 147
JRI60_RS05635 1317826 .. 1317850 +  -4.2  -3.06796   ACGAAAGTTGCTTTA         CG-GCTCCCTC TTCT GAGTGGGCGCG          TTCCATGAGGTCCCG  44 58
JRI60_RS05640 NONE
JRI60_RS05645 1322572 .. 1322612 + -22.8  -4.65895   AGTGACGGGGAAGTG C-ATCGGGGAGGAGCTGCT GGGG AGCGGCTCCTCCCCGATTG  TTTTTCCGTACGCGC 100 432
        dapE 1323826 .. 1323870 + -10.5  -3.09803   GGGCCCCGGGTTGAA CCCGTGTCCGCCCCCTCTCCC TCT GGGAGAGGGCTGGGGTGAGGG TCTTCCGTCCAGTTC  62 92
JRI60_RS05655 1324221 .. 1324247 +  -6.5  -2.78463   CGAGGCGTCGTCCGG        GC-CG-GCGCGGC TGA GCCGAGCACGAGC        TCTCATCGCGAGGAT  47 12
JRI60_RS05680 NONE
JRI60_RS05685 1330083 .. 1330109 + -10.9  -3.62096   CGGCTTCTTCTCGGC        CAGCTCG-CGGC AGAT GTCGACGAGCTG         TTTGACCTCCTCGAG  69 373
JRI60_RS05715 1335993 .. 1336010 +  -3.3  -3.28712   AGCACCGCCAGGTCG             GACAGGT CCAT GCCGGTC              TTCTGCACCCAGGGC  47 346
JRI60_RS05725 1336952 .. 1336976 +  -4.1  -3.14564   GGCCTGCACCGAGCC          CGAGACGTAGG TGG CCTTCAGCTCG          TTGGTGACGAGCTGG  47 180
JRI60_RS05735 NONE
        hemF 1339710 .. 1339726 +  -2.1  -2.52464   GCTGACGAGGAGGAG              GGTCCCC CGT GGAGAAC              TCCGTTCCCGACAAG  37 36
JRI60_RS05745 1340218 .. 1340240 + -11.2  -3.14132   GGAGCGGGAAGAGGA           GTAGCCGGGG GCC CCCTGGCAAC           TTGCTGGCCGGCCGG  64 22
JRI60_RS05750 1341810 .. 1341826 +  -5.7  -3.44051   TCGCCATGCCGAGCA              GCGCGGC CAG GTCGAGC              TTCTGCTGGTAGAGC  53 98
JRI60_RS05760 NONE
JRI60_RS05765 NONE
JRI60_RS05770 1344340 .. 1344384 +  -9.3  -2.56747   GGCGGGAAGCGCGCG TGGTCCGG-AACCTTGCG-GC CCACC GCGCGCATGGTGACCGGGCCA ATCTTCTGCTCGATG  53 340
JRI60_RS05780 1345257 .. 1345310 + -19.7  -3.25823   TTGTCCGGTTGTACG GGGAGACGCCA-GGCCGCTCGCTTTC CGA GGAAGCGAGTGCCCCTGGCGTTTCCA TTCGTGTGACCGGGC 100 124
JRI60_RS05785 1346700 .. 1346748 + -11.9  -3.29144   TCGAGCGCTGAGCCC GTTACGGGAGCCTGGA--GACGCG GAGG CGCGTCCATGCAGGCTCCCG-AGC TTCTCCAGGAACTGG  68 30
JRI60_RS05790 NONE
JRI60_RS05795 1350379 .. 1350390 +  -4.4  -2.87132   CCTTTCCCAGCTCGC                TCTC CACG GAGA                 TCTCTCCCCCCAACC  44 142
JRI60_RS05815 1357619 .. 1357651 +  -8.4  -3.23216   CGCAGGATGACGTCC     TTGCG-CGGTCCGCAG TCG CCGCGG-CCGTCGCAG     TTGCTGGTGGTGACG  56 103
JRI60_RS05825 NONE
JRI60_RS05830 1361498 .. 1361526 +   -11  -2.98823   CGGCGGTTGAGGTCG       GGAGCGCCGTCGG TCCA CC-ACGGCGGTCC        TCTCTCTCCGAGGGC  59 93
JRI60_RS05840 1362394 .. 1362408 +  -3.4  -2.70932   TTCAGCTCCTCCAGC               GTGCGC AGG GCGTCC               TGCTTGCCGGGGAAG  40 124
JRI60_RS05855 1367200 .. 1367214 +  -5.6  -3.07816   GAGTGACGCTCCTCT               CCCACC CCT GATGGG               TTCCATGCGTAAGCC  47 15
JRI60_RS05860 1368420 .. 1368438 +    -3  -2.64616   ACCAGCAGCGCCAGC             ACGGCC CACAGGT GGCCGC             TCATGTCGCTGCCGA  39 450
        hrcA 1370404 .. 1370449 +  -8.4  -2.70932   CGCTGGACAAGGCGT GAGCCTT-CCCT--CCCTCTCCC CCT GGGAGAGGGCTGGGGTGAGGGTC TACTTCCGGCGAAGC  52 24
JRI60_RS05900 1374930 .. 1374941 +  -4.4  -2.66634   GTGCCATGCCCGTGC                CCAT CCGA ATGG                 TGATCTGGTGAAGTA  42 3
JRI60_RS05905 1376054 .. 1376100 +  -9.9  -2.81464   TCTACCAGACCCGCC GGATGCTGGCGGGCGGGCCGT AGTGC GCGACGCGCTCGCCATCGACC TCTCATGGCTGCTGC  59 3
JRI60_RS05910 NONE
JRI60_RS05915 1378082 .. 1378094 +  -4.7  -3.52539   CATCACGTGGAAGCC                CGCCG CGG CGTCG                TTGTCGTTGGCCTTG  51 155
JRI60_RS05925 1381443 .. 1381460 +  -7.7  -3.13403   GGAGAGGGCGGGGGG             TGAGGGT CGTC ACCCTCG              TGTTCCTCGCCCCGG  54 105
JRI60_RS05945 NONE
JRI60_RS05950 NONE
        thiL NONE
JRI60_RS05960 1390332 .. 1390378 +  -4.2  -3.76837   ACGCCTGAGCACCCG GCCGGCTCCCGCCCTCCCCCT CCCTCC AGGGTG-GGTCGGGACACGGG TTGTTCGGTTGTCTG  57 33
JRI60_RS05965 NONE
JRI60_RS05970 1391299 .. 1391325 +  -7.9  -3.16564   GTCGTCAAGAAGGTA        CTGGGCGAGGGC TGAG GCCC-CGTCCCG         TTGCTGGCGTGCGGA  54 11
JRI60_RS05975 NONE
JRI60_RS05980 1394256 .. 1394296 +  -5.1  -2.85351   TGACCCATCGTGGGG  CGCGGCGTCCGCGCGTCCC ATG GGGGAGCGAGCATGCGGGG  TGTCATCTGGGGCGC  46 109
JRI60_RS05985 1394713 .. 1394747 + -11.5   -3.6682   CCTGACGGATGTGAG    GCTTTGACACGGTGCG CTAG CGCGGCGTGTC-AAGC     TTTGAATGCCTCGAA  75 36
JRI60_RS05990 NONE
        ugpC NONE
JRI60_RS06000 NONE
JRI60_RS06005 NONE
JRI60_RS06010 NONE
JRI60_RS06015 NONE
JRI60_RS06020 1405113 .. 1405150 + -18.3  -3.93988   CATCCATGCGGTTCA   GGGGGGCCCGGTGCGCG GAGA CGCCCGCCGGGCCCTCG    CTTTTTTTCGTCTAC 100 45
JRI60_RS06025 1406480 .. 1406495 +  -5.4  -3.53012   GAGGTGCTCGTCTGC              GCGGCCA CGT TGGC-GC              TTTCCCGGCCGGGGG  54 294
        pulA NONE
        larB 1412359 .. 1412391 +  -4.2  -2.87132   CGCTGAGCCAAACAC     CCCTC-TCCC-TCC GGGAGAG GGACGGGGTGAGGG     TATGTCGGACCCCGA  43 35
        larC 1413597 .. 1413610 +  -9.5  -3.08438   GCTCGGGGCGGTGAG               CCGGG GGCG CCCGG                TCTTGCGCTCTCCTC  59 27
JRI60_RS06050 1414837 .. 1414857 +  -9.7  -3.56643   TTGGGAGTGCCTCGC            GCGTTCCTC TCC GGGGAATGC            TTTGCCCAGTGTGAG  64 147
JRI60_RS06055 NONE
JRI60_RS06060 NONE
JRI60_RS06065 NONE
JRI60_RS06070 1419996 .. 1420021 + -14.1  -3.03441   GTAGACCCTCACCCT         GTC-CCTCTCCC AGA GGGAGAGGGGAC         TCTTCCCGACTGCTC  72 491
JRI60_RS06080 NONE
JRI60_RS06085 1421792 .. 1421808 +  -3.5  -2.88822   GCCGTCATCGGGGGT              GGCCGGC ATG GCCGGGA              TCGTTCTATGACCGG  43 41
JRI60_RS06090 1422984 .. 1422996 +  -3.4  -2.82516   GCAGGGGGAGACACC                GCAT GTTGG ATGC                TCTGGTGGTGGGAGC  41 99
JRI60_RS06095 NONE
JRI60_RS06100 1424964 .. 1424988 +  -4.2  -2.90075   GCTGGGTCCGCTCAG         CTCC-CCGCGC CCTC GTGCGCCGGAG          TCTCCTTCGACGCGG  43 51
JRI60_RS06125 1429377 .. 1429417 +   -11  -3.05384   CCTGACATCCAGGGG ACGC-CAGTGGGGCGGCCTG CCT CTGGCCGCCCC-CGGAGCGG TTGGATCGACCCAGG  62 36
        grpE NONE
        dnaK 1432256 .. 1432273 +  -9.8  -2.53759   CCTGAGTCTCGCGCG             GGCCCC CTTCCC GGGGCC              TGCCTTCCCGGTGTT  57 36
JRI60_RS06140 1434185 .. 1434207 +    -7  -3.14564   GCATCCCCGTGCGCT          CGCCCGCGT TCAGCC ACGCGG-CG           TTCGTGGCCGCCTCG  52 396
JRI60_RS06150 NONE
JRI60_RS06155 NONE
JRI60_RS06160 NONE
JRI60_RS06165 NONE
JRI60_RS06170 1439594 .. 1439626 +  -2.6  -2.89564   CGTCCTGTGTATGCC     CCCTCTCCCTCTG GGAGAGGG CTG-GGGTGAGGG      TATGTGGCCTCCCCG  40 49
JRI60_RS06175 NONE
JRI60_RS06180 1442559 .. 1442615 + -13.3  -2.52834   GTTGAGCCAGAGGTA CACACCCGCGCCCGCGAGCGCGGCGCC CAC GGCGGCGCTCACGCCCGCGATGGTGCG CTTGCTGCTGGCCTC  62 145
JRI60_RS06190 1445840 .. 1445872 + -20.6  -2.52464   ACTCGGACGTAGCGA      CCGGCGGCGGACTC GTCTA GGGTCCGCCGCTGG      TCCGTTCACCCACCA  95 80
JRI60_RS06195 1446688 .. 1446699 +  -3.6  -3.70902   CCGGTACGGTCGTCT                CGTC CCCG GGCG                 TTTCGCTCTGGCCGG  54 85
JRI60_RS06200 1447679 .. 1447694 +    -4  -3.31515   ATTGAGCACTTTGCC              GG-ACAC CGT GTGTGCC              TTCTCCCAGGTCTTT  49 126
JRI60_RS06270 NONE
JRI60_RS06275 1466919 .. 1466947 +    -3  -3.17212   GCTCTCCGGCCTGAC        TCGGATGGGCGG GAAGA CGGTCCAACTGA        TTGCTGCGATGATCC  44 87
JRI60_RS06280 1468122 .. 1468136 +  -5.6  -3.14564   AGCACCTGGAACTTC               GGCGAG CAG CTCGGC               TTGCTACACGCCTCG  49 255
JRI60_RS06295 1469615 .. 1469649 + -22.9  -2.87132   AGCTTCGGGCAGGGC     CGGACGCCCCGCGGG GATGA CTCGCGGGGCGTTCG     TGTGTCCAGCACCGG 100 40
JRI60_RS06300 1471005 .. 1471038 +  -3.8  -3.28712   GGTGGCGAAGCCCGC    GAGCA-GC-TCCCCGG CCAG CCGGGGCCGCGTGGTC     TTCTCGGGCCGGCGC  47 57
JRI60_RS06310 NONE
JRI60_RS06315 1473269 .. 1473286 +  -6.9  -2.72463   CTTTTCACCGCGGGT             CGCACCC TTGC GGGTGGG              TGATTAACCGTCGAT  48 132
JRI60_RS06320 NONE
JRI60_RS06325 1474958 .. 1474970 +  -4.7  -2.70932   GGCCCCGCTTCATCC                CGGAG GTG CACCG                TGGTTGAGAACGAGC  43 6
JRI60_RS06330 NONE
JRI60_RS06335 NONE
JRI60_RS06340 1478529 .. 1478539 +  -4.6  -4.05446   AAGACAGTCCGAGAG                 CGCG CGA CGTG                 TTTGTGATTGAAAAA  62 461
JRI60_RS06400 NONE
JRI60_RS06410 NONE
         bcp 1493659 .. 1493701 + -11.3  -2.91264   CCGGTAGTCCTGTGT CGCCCACCTC--CCCTCTCCC TCT GGGAGAGGGACGGGGTGAGGG TATATCCCTCCCCGG  61 34
JRI60_RS06420 NONE
JRI60_RS06425 NONE
JRI60_RS06430 1495965 .. 1495985 +    -6  -3.28712   ACGAGCGCCTCGATG            GCCCGGCG CTGCA CGTCGGCC            TTGTGGCAGACGAGG  51 270
JRI60_RS06440 1497580 .. 1497621 +  -2.1  -3.36492   GCGAGCGTCGGGAAG CGGCCGGTGGCGAT-CATCC GCT GGATGTAGGGCCACGTGGCG TTCTGCCATTGCGCC  45 194
JRI60_RS06450 NONE
JRI60_RS06460 1502452 .. 1502473 +  -3.7  -3.02186   ATACCGGGGCAATGG           TCAGGGCC TCTGCCT GGCCC-GA           TACTTTGTCCCATCT  44 164
JRI60_RS06465 NONE
JRI60_RS06470 1504686 .. 1504705 +  -4.2  -2.78384   GTGGACTGGACGTCC            CTGCGGCGG GAG CC-CGGCAG            TGTGGTGGACCCGGA  41 362
JRI60_RS06485 NONE
JRI60_RS06490 1506639 .. 1506666 +  -7.8  -3.14344   CGACGAGGCCGCGGG        CCAGAA-CTTCTC CGG GAGGGGGTTCTGG        TTGCTACCGCAGGTG  54 397
JRI60_RS06520 1513719 .. 1513741 +  -4.9  -3.54029   TTCCTGCGGCTCCTC          GTGCCTTGAG CCGC CTCGAGG-AC           TTCTGATTCCTCGGA  52 17
JRI60_RS06525 1516696 .. 1516709 +  -3.8  -2.79796   GGTATCGAGCATCCC               GGGT TGAGCT ACCC                TGTGGTGCCATGGCC  41 107
JRI60_RS06530 1518799 .. 1518839 +  -3.1  -3.48924   GGATGATGTCGGCGG CGACGAGCAGCTCCAGCC CGAGCA GGATGGAGCGGC-CGACC  TTCTCTCGGAAGTGG  50 255
JRI60_RS06560 NONE
JRI60_RS06565 1524704 .. 1524720 +  -7.9  -3.14132   GTATGGCCGCGACAC              CGCCCGT GCG GCGGGTG              TTGATGACCGCCGAC  54 49
JRI60_RS06570 1525849 .. 1525882 + -13.7  -2.52543   TGAGGACCGGGTCCG     GAGGGAGCCCCCGTG TCTC CACGGGGGCCGCCGC      TCACTTCCGCAGGCT  68 38
JRI60_RS06620 1538744 .. 1538758 +  -4.2  -3.08642   TGTAGTTGGTGGTGC               CGGC GGTGAAG GCCG               TTCCGTAGGTGCTCT  45 441
JRI60_RS06630 NONE
JRI60_RS06645 1542992 .. 1543019 +    -4  -3.06501   TGGCTTGACGCGCGG        GGGTTGAGCCCCT AGG AAGGGC-CTGCCC        TTGGGTGCCCATGTC  44 19
JRI60_RS06650 NONE
JRI60_RS06655 NONE
JRI60_RS06660 1547767 .. 1547777 +  -8.2  -2.63596   TACCCCTCCATGAAG                 CCCG ATG CGGG                 TACTGTGCGCTGACC  52 2
JRI60_RS06665 NONE
JRI60_RS06670 1549213 .. 1549246 + -16.1  -3.67622   GCGGCACGGTGCTCA     GAGGCCGGGCTCCC AGCAAAC GGGA-CCCGGCCTC     TTCCTTTTCCGGCTC  88 63
JRI60_RS06675 1549346 .. 1549371 +  -3.9  -3.05384   TCCCGTACGGGGTAC         TCGCAGTCAGA AGCT TCCGGATGCGA          TTGGATCGCAGCACG  44 25
JRI60_RS06680 NONE
JRI60_RS06685 NONE
JRI60_RS06690 NONE
JRI60_RS06695 NONE
JRI60_RS06700 NONE
JRI60_RS06705 1552571 .. 1552596 +  -5.3  -3.11073   GTGGGGGAGTCGGTG         TGGCTCCACCG GCCT CGGTGATGTCA          GTTTTGACTCGCGTG  49 5
JRI60_RS06710 1554319 .. 1554338 +  -4.9  -2.52491   CGAGGAAATCCCCCA            GCTCACC AACCCC GGTGTGC             GTTGATGGGTGTGTA  42 1
JRI60_RS06715 NONE
JRI60_RS06720 1558574 .. 1558599 + -16.1  -3.75024   CGGGAAGGAGCGCCC         GCCCGGCGAGG GCTT CCTCGCCAGGC          TTCTTCCTGGTGACG  88 486
JRI60_RS06745 NONE
        rapZ 1564712 .. 1564725 +  -3.7  -4.10552   ACTGCTTCCTCGTCT               GGCAG CCGA CAGCC                TTTCGTTTCCTGGGC  61 288
JRI60_RS06755 NONE
JRI60_RS06760 NONE
JRI60_RS06765 1566578 .. 1566592 +  -7.8  -3.15544   GGTCGTCCTCCTCAC               CACCCT GCG GGGGTG               TTCATGAGCGTGGCC  54 4
JRI60_RS06770 NONE
JRI60_RS06775 NONE
        ptsP 1569615 .. 1569643 +  -9.5  -3.40403   GTTCCATGTTCGCGC        CCTCTCCGTCC GGAGAGA GGGCGGCGAGG        TTGTCCTCGGGGGCG  61 170
JRI60_RS06815 NONE
        ureA NONE
        ureC 1579363 .. 1579377 +  -7.1  -3.28712   CGGTTGCCGCTGGCG               CAGCG CTACT CGCTG               TTCTGAGGGACGGGC  54 5
JRI60_RS06830 NONE
        ureG 1580818 .. 1580853 + -13.2  -2.71011   GGCGAGCTTTACCCG    CTCGCCGGGC-TCGGGC GTG GCCCGCCGCTCGGGGAG    TGCTTCAGGCCGCCT  67 50
JRI60_RS06855 1587835 .. 1587863 + -21.7  -5.42198   CCAGGTTTCGAGAAA        CGCGCGTGGGCCC CGA GGGCTCGCGCGCG        TTTTCTTTTTTGCCG 100 63
JRI60_RS06860 1589536 .. 1589562 +  -5.8  -4.30477   CGAGCTCTTTTGAAC         GTGGTACGTG GCACCCA CGCGGACCAC         TTTGTCTGTTGTTTC  72 28
JRI60_RS06865 NONE
JRI60_RS06870 1591844 .. 1591854 +    -4  -3.12717   CTCGCCGTCCCGTGC                 TTTG AAT CAAA                 TATATCTTCATCCGT  45 21
JRI60_RS06875 1592918 .. 1592965 + -10.7  -3.59966   GAGTTTCGCCGAAGC CCGCTGGC-CAGAGGGCCGTG CATTCCCT CACG-CCCTCTGTGTCAGGGG TTGTCTCTAGAGTCT  70 39
JRI60_RS06880 NONE
JRI60_RS06885 NONE
JRI60_RS06890 NONE
JRI60_RS06895 NONE
JRI60_RS06900 1597543 .. 1597575 +  -4.2  -2.90763   GGGCTGGGGTGCCGA     TTGAGAGGGTGTGGA TGAC TTCACAGCC-CTCGA      TGTGTGCGGTATAGG  43 22
JRI60_RS06905 1598374 .. 1598397 +   -16  -4.06502   TAGGGCAGTTGCCCA          GAGGGGCCTC GGTT GGGGCCCCTC           TTTCGTTTCAGGGTA  93 51
JRI60_RS06910 1599698 .. 1599728 + -19.8   -5.2853   TCCCGGCTGTTGAAA       CGCGCGTGAGCC CCGGTAA GGCTCACGCGCG       TTTTCTTTTTCCATC 100 76
JRI60_RS06915 1601305 .. 1601315 +  -5.4  -2.55544   GCATCGTGCGCAGGG                 CTTC CGC GAAG                 TCGGTTCCATCGTGG  43 259
JRI60_RS06925 NONE
JRI60_RS06930 1605386 .. 1605435 + -18.8  -2.50816   TGGAGTACGGGGCCG GGTACCCTCACCCCTCCCCTCTCCC GGC GGGAGAGGGGAGGG-TG-GCG-ACC GTTACTCGATGAGGC  87 49
JRI60_RS06950 NONE
JRI60_RS06955 NONE
JRI60_RS06960 1612531 .. 1612541 +  -8.2  -2.87132   CATGCGCTGGTGAAC                 CGCG CAC CGCG                 TCTGTCCGCGGAAAA  54 28
JRI60_RS06965 1613366 .. 1613387 + -10.9  -2.94144   TCCATGCGGTGTCCG           CATCTTCCC CCCA GGGAGGATG            TCCTTTCCATGAAGC  61 122
JRI60_RS06970 1615139 .. 1615163 +  -7.1  -3.80625   ATCGTGCCGGAACTC          CGACCGCTC CACGAAC GAGCGGTCC          TTTCCCTTCTCGAAG  62 176
JRI60_RS06980 NONE
JRI60_RS06985 1617052 .. 1617066 +    -7  -3.49858   CTCGTAGTCCGTCCA               CCGCAC GGG GAGCGG               TTCTGATATGGTTCC  58 34
JRI60_RS06990 NONE
JRI60_RS06995 1619053 .. 1619082 +  -3.5  -2.89564   GCGCCTCGGGTTGGC       GGAGAGCGAGC GGGCGAGG GTATGCTCTCC        TGTGTGACCTCCAAG  43 55
JRI60_RS07000 1620468 .. 1620478 +  -6.8  -3.80733   GCTACGGGAGACGAT                 CCTG CGG CAGG                 TTGTTCTGCACTCCC  64 52
JRI60_RS07020 1627703 .. 1627713 +  -8.2  -3.53091   TTGCATCGCCTCTCT                 GGCG CGC CGCC                 TTTCAGGCGAGCGCT  62 170
JRI60_RS07025 1629660 .. 1629674 +  -5.6  -3.21099   GGGAACAGTGCTTCG               GCCCTG GCG CATGGC               TTGCTCCTGGCAGCC  49 122
JRI60_RS07030 NONE
JRI60_RS07035 1632289 .. 1632305 +  -7.3  -2.70932   CCGCTGGCGGGAGGC              TCCTGAT ACG ATCAGGG              TCCTTCGCACGGACG  48 64
JRI60_RS07040 1633643 .. 1633655 + -10.5  -3.50393   CCCACTTGGATACCC                GCGCG CCC CGCGC                TTGTGTAGAGTGCGC  67 186
JRI60_RS07045 NONE
JRI60_RS07050 NONE
JRI60_RS07055 1636601 .. 1636627 +  -2.8  -2.78384   CGGGGCGGCGCTCCT         GGCCTGACTTGC TGG GGAGGGCAGGGC         TCTGCTAGACGCGGC  40 19
JRI60_RS07060 1637880 .. 1637908 +   -21  -4.45544   AGCCCGGGCGTGTCC        GGCCCCGTCGCC TTCCT GGCGGCGGGGCC        TTTTCATTCGTGGCG 100 51
JRI60_RS07075 NONE
JRI60_RS07080 1642613 .. 1642630 +  -8.4  -3.05384   GGTGGGTTGTCGCTC             CCTGGG TGTACC CCCAGG              TTCCGTGCGACGAGG  55 85
JRI60_RS07085 NONE
JRI60_RS07090 1645249 .. 1645267 +  -8.1  -2.78816   CACGGGGTGAAGGTG            CGGCTGCG CTCG CGC-GCCG             TGTAGTGGACGGTGC  51 2
JRI60_RS07095 NONE
JRI60_RS07100 NONE
JRI60_RS07105 1646647 .. 1646683 +  -8.8  -4.21319   AGGCGCCAAACACCT   GGGGTGCCGCCTCACGCT TGC AG-GTGAGGCAG-ACCTC   TTTCTTCGCGTTCGT  76 188
JRI60_RS07120 1648573 .. 1648589 +  -6.5  -3.83844   CGCTCCCGGGGCAGG              CGGGC CCCAGCA GCCCG              TTCTTCCTTCGTGAG  62 48
JRI60_RS07125 1649428 .. 1649449 +  -8.6  -3.30441   CGGGAAGATGTCGCG           CTCGGCGC CCGGGT GCGCCGCG            TTGTAGCGGATCATC  58 334
JRI60_RS07155 1655212 .. 1655250 + -11.5  -4.62783   CTGAAGCAGTGAAGT   CCTGACGCCCGGGAGCC CATGT GGCCCCCGGGCGTCTTC   TTTTTGGGGTGCCTG 100 48
JRI60_RS07185 1667024 .. 1667058 + -25.8  -4.17316   GGACCCCTGAAGTAC     AACGGGCGGGCACCTC GTG GAGGTGCCCGCCCGTC     TTCTTTTCGAAGCGT 100 51
JRI60_RS07200 1672673 .. 1672704 + -21.6  -2.75382   CGCGCTGCCGTGCTT      CACGGGGCTCCGGT CCAG GCCGGGGCCCCGTG       TCGTTCGATGGCATG 100 56
JRI60_RS07205 NONE
JRI60_RS07210 NONE
JRI60_RS07215 NONE
JRI60_RS07220 NONE
JRI60_RS07225 1680077 .. 1680101 +  -6.9  -3.14344   CACCGCGGGCACCGC          CCCGCGCGAGG AGT CCACGCCCCGG          TTGATGGAGCGGCTG  52 57
JRI60_RS07230 NONE
JRI60_RS07235 NONE
JRI60_RS07240 1684182 .. 1684205 +  -2.3  -3.09671   CCCCTGGGAGAGGGC          GGGGGGTGA GGGTAG TCGCCTCCG           TGTTCAGATTCCCGT  42 64
JRI60_RS07265 1695682 .. 1695695 +  -3.7  -3.31144   TGGACGCTTCCGTCA               GACCG TTGG CGGCC                TTGTAGGCCTCCCAC  47 501
JRI60_RS07275 1700625 .. 1700638 +  -3.7  -3.24188   CACCGGACAGCTCGT               CGACC ATCT GGCCG                TTGATGCTGATGTCG  45 190
JRI60_RS07290 NONE
JRI60_RS07300 1706987 .. 1706997 +  -2.4  -3.15861   GGCGGGGCAGGCGCT                 CCAG CAG CAGG                 TTGATGGCGATGGTG  44 177
JRI60_RS07320 1711658 .. 1711677 +  -5.6  -3.60792   GCCCGCCGTGTGCGG            CC-CGGTGG GCT CCCCCGAGG            TTTCCACGTTCCGCC  54 52
JRI60_RS07325 NONE
JRI60_RS07330 1716619 .. 1716651 +  -4.3  -3.04792   CCCCGGGAAGATGGC    GGAAGGATGCGTCCAC CTCC GTG-ACGC--CCTTCC     TCTTCACCGTCGTGG  45 122
JRI60_RS07335 NONE
JRI60_RS07340 1718076 .. 1718094 +  -7.4  -3.36327   AGTCCCCAGGCGGCC             GCTGTAGC CCA GGTACAGC             TTCTCCGTGAGGTAC  55 189
JRI60_RS07355 1725503 .. 1725527 +  -3.5  -3.30124   GAGAGGGGTGCGGCA         GG-CCTCGCC AGCGGA GTCGAGGTCC          TTCTGGCAGGTGCGC  47 198
JRI60_RS07370 1728053 .. 1728087 +  -5.6  -3.08679   GAGCCGTCCTCCCGT    CCG-CAGGCGCCGAG AGCGCG CTTGACGCCGGACGG     TCTTGGCTGGGAGGG  49 1
JRI60_RS07375 NONE
JRI60_RS07380 NONE
JRI60_RS07385 1730079 .. 1730101 +  -9.1  -2.79915   GCTGCCGCCTCCCGA           GGCCGCTGG TTAGT TTAGCGGCC           TATGGTCGAGTACCT  55 13
JRI60_RS07390 1730764 .. 1730814 + -12.5  -3.01791   GAAGTGCAGCGACCT C-GGCCCGTGCAGGTCAGGTCTGG TCAA CCAGACCTGAACCGCGGGCGCCCG TCTTGCGCCGCGGAT  67 66
JRI60_RS07395 1731649 .. 1731683 +  -2.6  -3.14931   CGGTGGGGTGACGTC     CCGCTGGACGTTGCCC GAA GGACACGGTGGAGCGG     TTCCTCCACCGTGAG  42 30
JRI60_RS07400 1733814 .. 1733824 +  -5.4  -4.63527   ACGGCGCGAGCGCCC                 CTGA GGC TCAG                 TTTTTCAGCTGCTCC  77 22
JRI60_RS07410 1738080 .. 1738131 +  -2.9  -3.84406   AATGACGGACAGCTT CGCG--CCCGCGGGCGC-GTCCAG CAGCTCC TTGGCCCGCGCCGGCAGGTACGCG TTCTTGTCGTCCAGC  55 36
JRI60_RS07420 1740307 .. 1740320 +  -3.7  -3.22476   GCTGCGGCGCGTGCG               GCGCC GGTA GGCCC                TTGGTACTCGGTGCT  47 16
JRI60_RS07425 1742133 .. 1742173 +  -2.5  -2.81547   TGTCGCTCTGACTCG T-GGC-GAGCTCCTCGGCG ACCAG CACCGAGGCGATCTGCCCA TCCTTGATGTCGAGG  39 254
         mug 1743263 .. 1743275 +  -6.9  -3.53012   GTGTCCCCACCAGGT                CGCGC ACG GTGCG                TTTGGGGAAGACGCA  56 402
JRI60_RS07445 1745564 .. 1745600 +  -4.2  -3.28181   CGGCCGCGGAACTGA   GGGGC-CGGGGCGAGAG GGCT CTCAGGCCACGTGCACC    TGTTCCTTGCGTTTG  47 26
JRI60_RS07455 1747394 .. 1747440 + -12.3  -2.53876   GACGCTAACCACCCA TCCCC-CAC-CCACCCCTCTCCC TCC GGGAGAGGGACGGGGTGAGGGTA TCCGTTCCCGTCCAG  64 33
JRI60_RS07475 1751685 .. 1751699 +  -9.2  -3.80114   TGATTTAGATCTGGT               GCCGCG GCA TGCGGC               TTTACTGGATTGATC  71 96
JRI60_RS07515 NONE
JRI60_RS07520 1766865 .. 1766884 +  -7.1  -3.28712   CCTCGCGCTGGTGGC            GGGTGGC GGTGTA GCCATCC             TTCTCGGAGGAGAAC  53 178
JRI60_RS07535 1770377 .. 1770387 +  -4.6   -3.1733   GAGGGTCTGAGGCGT                 CCGG CCG CTGG                 TAATTTTGTAAAACG  47 31
JRI60_RS07540 1771519 .. 1771568 +  -9.2  -3.15544   TCTTCTTCCCGTGAC G-GTCTCCCACGAAGCCTCGGCCC TCGA GGGCCTGGGCCTCG-GGGACGCGC TTCATGGGGGTCCCC  56 395
        fumC NONE
JRI60_RS07555 1774263 .. 1774302 +   -15  -3.28712   GGGGCCGCGGGCCGG  TGTAGTGCCCGCTCACGCC AGG GGCGTGTG-GGGCACTCCG  TTCTGACGCCGCGCC  78 21
JRI60_RS07565 1775981 .. 1776008 +  -4.7  -3.10164   CCGAGCTGCGCGCGA        ACGCGGCGGGGC ATTGA GCCGC-CCGCGC        TTCAGTGCTCGGTGC  47 9
        clpP 1777659 .. 1777678 +  -2.8  -2.73441   CCGAGGGAGCCCCGT            GTG-GCACG GAC CATGCTCAC            CTTTGAACCGTCATG  40 103
JRI60_RS07580 1778196 .. 1778211 +  -4.7  -3.40403   CAGCGCCTGCATGCT              CTCCA GGCCGA TGGAG               TTGTCATACCGGCCA  49 171
JRI60_RS07615 1791866 .. 1791896 +  -3.9  -2.73681   GTGTTCGTTGACGAT      G-TGGCGCCGTACC TTGA GCGACGGCGTCAGC       TCGTTGCGCTCGATG  40 97
JRI60_RS07625 NONE
JRI60_RS07630 NONE
JRI60_RS07635 1799958 .. 1799974 +  -6.5  -2.81133   GGACGGTGTTTCGCC              GTCCATG CCT CATGGCC              TGTCATGCATCACTG  48 93
JRI60_RS07640 NONE
JRI60_RS07645 1802028 .. 1802053 +  -6.9  -2.90723   CGTTCGTCAGGTTCG         GAGTCTATATG GTGT CATATGGACAC          TATGATTCCGAATGA  50 54
JRI60_RS07650 1803377 .. 1803407 + -11.1  -3.04792   CGCCTCACGTCCTGG      CGCAG-CGCGTTCG ACAG CGAGCGCGACAGCG       TCTTCACGATGGTCA  60 199
JRI60_RS07660 1804812 .. 1804836 +  -9.9  -3.15996   CGGGACCCTCACCCC          GACCCTCTCCC GGA GGGAGAGGGGA          TGTTGCTCGGTGGTG  62 82
JRI60_RS07665 1806243 .. 1806276 +  -8.1  -2.70932   GGACAGCACGGGGCA     CGTGGTGCACTGGGGC CGG GTGCCCGTGCAC-ACG     TGCTTGCCGAAGGGC  49 89
JRI60_RS07690 NONE
JRI60_RS07695 NONE
JRI60_RS07700 NONE
JRI60_RS07705 1811740 .. 1811760 + -14.1  -3.14132   CGCGCTCGGGAGCAA            CTGGTCTGA CTG TCAGACCAG            TTCGTCCGAAGCGCG  73 80
        argC NONE
        argB 1816244 .. 1816264 +  -5.3  -3.78775   TCTCAAGTTTTTCCC            CGGAGCTGA CCG TGAGCACCG            TTTCCTCCTCGACCC  60 124
JRI60_RS07735 1817396 .. 1817417 +  -2.8  -3.89524   CGAGGTTCTCACCGT           GGCTCGCG TGCGCC CGCGTCCC            TTTGTGCAGTACGCT  58 45
JRI60_RS07740 1823133 .. 1823151 +  -2.3  -3.23555   CCCGGGGTGCTCCCT             CCTGACG TCTTT CGATAGG             TCTGTATTCTTTCGA  44 133
JRI60_RS07745 1824860 .. 1824884 +  -4.1  -3.59979   ACGTGCAGGCGGCGG          TGGAGGTGGAT AAT GTCCGCCCCCC          TTTCGCCTCACGGGA  51 82
JRI60_RS07750 1825718 .. 1825728 +  -2.4  -3.14132   GTGGGTTTGAAGTTG                 GGCG CCG CTCC                 TTCGTCAGGAGGCGC  42 57
JRI60_RS07755 1826324 .. 1826351 +   -14  -3.65046   CAGGCCCGCCAGCCG        CCGCGCCGCGCG CGCC CGCACGGCGCAG         TTCTTCGACTCGAGC  79 189
JRI60_RS07775 1832657 .. 1832670 +  -9.5  -3.28712   GTGACGGCCGTCCGT               GGCGC TACC GCGCC                TTCTGCGCCGGCACG  61 37
JRI60_RS07785 NONE
JRI60_RS07790 NONE
        queC NONE
        ddpX 1846087 .. 1846131 +  -7.2  -3.03124   AATAACCCTCTCCCT CTGGGAGAGGGACGGGGTGA GGGTATG TCCCCCCGTCC-TC-CCCAC TGTTCGAACCTCACA  51 36
JRI60_RS07825 1851353 .. 1851364 +  -7.2  -3.61398   TGCTCGGCGGCCTCG                GCCC CACC GGGC                 TTCTTGGCGCGCACG  61 291
JRI60_RS07840 1854910 .. 1854944 + -22.3  -2.62983   TCGTTGACCAGCGCG    TGAGCGGGTCGGGGCG GTGC CGCCCCGACCCG-TCA     TGCTCTCCAGGTGAC 100 147
JRI60_RS07860 1858632 .. 1858654 +  -5.4  -3.59979   CCCGAAACAACAGCG           CCCGGGCCTG CTC CAGGTCCGCC           TTTCCGATCCGCGAC  57 326
JRI60_RS07875 1861346 .. 1861381 +  -2.6  -3.14211   TCATGCCGCGAAACG   CC-GAGTCCCGCCG-TC AGCGG GAGCGG-GGGACCCAGG   TTCGTAGGGGCGAGT  42 286
JRI60_RS07880 1863555 .. 1863565 +  -2.4  -3.50853   TCACGCGCATGTAGC                 GGCC GTC GTCC                 TTCTCCTTGACAGGG  48 122
JRI60_RS07905 1870415 .. 1870429 +  -7.8  -3.29511   CTCACCGCCTCGCTG               TGAGGG AGC CCCTCG               TTGTCGAGGAGTCAG  56 347
JRI60_RS07910 1871816 .. 1871828 +  -9.1  -2.74605   TCGTCAACCCGAGGC                TCCGC GGC GCGGA                TGGGTTTTGACACGG  55 3
JRI60_RS07920 1873348 .. 1873358 +  -4.6  -3.30441   CGCCCTCGTAGGAGA                 TGGC CGC GCCG                 TTGTGAGCCGTGCTC  49 297
JRI60_RS07925 1874665 .. 1874679 +    -7  -3.28712   CGATGCCCTTCTTGC               CGCCGG CCA CAGGCG               TTGTGGAGACGGAGA  53 430
        ppsA 1881938 .. 1881958 +  -3.9  -2.62184   GATGCGCTCCTGAGC            GCCAGAG CCCCTCC CTCCGGC            TCATGTCACCAAAGC  40 100
JRI60_RS07945 1882856 .. 1882867 +  -2.2  -3.19389   ATGGAGCCCAACCTT                CGACC GGA GG-CG                TTCATGCGTCGCTTC  42 223
JRI60_RS07950 1883166 .. 1883196 + -10.3  -3.15544   AAGTAGGGAAGCGAG      AGCCCCGTCGCGCC TGAT GGCGCC-CGGGGCC       TTGCTACGAGTCCCA  62 57
JRI60_RS07965 1885978 .. 1885996 +  -6.6  -2.52464   CCGGCGGGCGCCGGC             CGGTGGGC GTG GCTCAACG             TGCGTTGGAGCCAGG  45 142
JRI60_RS07970 NONE
JRI60_RS07975 1886925 .. 1886966 +  -7.1  -2.64616   ATCTGTTTCACGTGA GCGACGATCCTCCTCTTCC GGTC GGAAGAGCACGTACGCCGC  TGGTGTGACTCCCGA  47 26
JRI60_RS07980 1887169 .. 1887189 +  -3.9  -4.21141   GCGCTAATCCAGCAA            CTGGCGC AGGCCGC GAGCCAG            TTTGGTTTCTTGGCG  65 42
JRI60_RS07995 1892111 .. 1892128 +  -4.9  -3.60627   GCGAGAAGTCGGCTC             GT-AGGAC ACC GTCCTGAC             TTTGGAATGCAGTCA  52 121
JRI60_RS08010 1894790 .. 1894824 + -15.7  -3.28712   TACTGAGTGCCTCCT    C-CGGCGGCGGCGCGA TACA TGGCGCTGCCGCCGCG     TTCTGCCCCCGAGGA  80 35
JRI60_RS08020 1895865 .. 1895887 +  -6.3  -2.65264   ATGGATCGGCGCTCC           GGAGTGTGA AGTGA TTACGCTCC           TCGTGTACCTGGTGA  46 12
JRI60_RS08025 NONE
JRI60_RS08030 1896729 .. 1896747 +  -6.7  -3.08679   ACACGCGGGGAGGTG            C-CTGCGC ACGC GCGCAGCG             TCTTCGGTGACCGGC  52 137
JRI60_RS08035 1896997 .. 1897021 +  -2.8  -3.40597   CTCTGGGAGAGGGCT         G-GGGTGAGGG TCTA CCGTCATCCAC          TCTTTGAATACACGG  48 85
JRI60_RS08040 1899114 .. 1899127 +  -2.3  -3.14132   ATCCGCGGAGCTTCG               CATCG ATTC CGACG                TTGGTGGCAAGGCCA  42 447
JRI60_RS08050 1901240 .. 1901277 + -21.5  -3.24232   TTCGCTGAAGTGAAA   GAAGGGAGAGGGGCACCC GCC GGGT-CCCTTCTCCCTTC   TGTGTTTCCAGGGGA 100 50
JRI60_RS08055 1902791 .. 1902824 + -10.2  -4.60255   AGAGGGAAGGGTAGA     CCGGGCCCATGCGCT GAAAA GGCG-GCGGGCCCGG     TTTTTCGCAGGTTCT  93 42
JRI60_RS08075 1908438 .. 1908459 +  -4.3  -2.79492   ATAGGGCCCCAACTG           CGTCAGCCG CGCA CGCATGACG            GTTTCCAGTTCGGCG  42 485
JRI60_RS08085 1911513 .. 1911552 +  -9.3  -3.55444   TCGAGGGAGCGGGGC TCGCC-GCGCCGG-GCGAG GTAG CTCGCGCTCGCGCAGGTGA  TTTGCGGCATGGGCG  64 410
JRI60_RS08125 1926305 .. 1926320 + -10.4  -3.05384   CCGCTCACCGTGCTG              CCGGGT TGAG ACCCGG               TTCACTGAGCGAGGA  60 17
JRI60_RS08130 1928053 .. 1928066 +  -5.9  -3.28712   CGCGGCCTTCCACGT               TGCCG GGCC CGGCG                TTGTAGGCGGCCACC  51 180
JRI60_RS08145 1929918 .. 1929945 +  -2.6  -3.67918   CCGCCGCCTGAGCTA        GGCTGTGGGC CTGTCCGT GCCCATGACC         TTTCCCGTCTTCCTT  51 30
JRI60_RS08150 NONE
JRI60_RS08155 NONE
JRI60_RS08160 1932489 .. 1932525 + -12.2  -2.90075   CGGCAAGTGAAGTGA   GCGGGAGAGCGGGCAAG AGTC CCAGCCCGCTC-CCTGC    TATGATTGGACCCGC  66 31
JRI60_RS08165 1933628 .. 1933676 +    -6  -3.66018   AAGTGAGTCGGTTCA GCGC-AGGGAGTCCAACTGCTTCG CCT TGTCGC-GTTGGACTTCCTCGAGC TTCTTCGCCTCCTCG  59 35
JRI60_RS08175 1935955 .. 1935990 +   -11  -3.04144   GGCTCTTCGCCGTGC    GCTTCCCGGCCG-GGCG CTT CGTCGCGGCCCGGGTGC    TCTTCCGGGTCGCGG  60 376
JRI60_RS08185 1937648 .. 1937701 + -10.9  -2.87963   AGGTATGGCTCAGCG TTTGCGAGCCCG-GCGCGGCGGCGGG GAA CTCGATGCCCTGCTCGGTCTTGCAGA TCTCCTCGTTCTCGG  59 419
JRI60_RS08200 NONE
JRI60_RS08205 1940972 .. 1940996 +  -3.5  -3.05816   AGTGTCGGCGCACGG         ACGTCGCTCC CTCCCT GGAGCG-CGA          TTCCCTGGACCCTGG  44 66
JRI60_RS08210 NONE
JRI60_RS08215 NONE
JRI60_RS08220 1943681 .. 1943704 +    -3  -3.05463   GCGACTCATGCAGGC          GACG-CGGAGG GGA CCTCCGGCGGA          TTGGGTGGAGCGCGT  42 236
JRI60_RS08225 NONE
JRI60_RS08230 NONE
JRI60_RS08235 NONE
JRI60_RS08240 NONE
JRI60_RS08245 NONE
JRI60_RS08250 NONE
JRI60_RS08255 1951602 .. 1951612 +  -2.4  -3.05816   CATCCGTAGGACTCC                 CAGG ATC CCGG                 TTCCCTGAGGACTCC  41 7
JRI60_RS08260 NONE
JRI60_RS08270 1954448 .. 1954467 +  -6.4  -3.53811   GAACAACATCCTCAA            CC-CGGGGA AGA TCCTCGAGG            TTTGAAGACCCTCAC  56 1
JRI60_RS08275 1955501 .. 1955548 +  -3.9  -4.11216   CGATCTTGTTGATGT CGCGCAGCACGCCCGGCGTGT TGCGGT GCACGTTGAGGATGCGGTGCG TTTTCGGAATCAGCG  61 223
JRI60_RS08295 1959462 .. 1959478 +    -5  -2.76815   CGCACCGGGCGGTCA              GGCCTC GGGGA GCGGCC              CTTCTTGGCGCACGT  43 91
JRI60_RS08300 NONE
JRI60_RS08305 1960708 .. 1960726 +  -4.4   -4.1157   GAAGCCGCGCATGCG             CGAGTAGG CCT CCACCTCG             TTCTTCTTCTTGGTG  63 102
JRI60_RS08315 1963751 .. 1963761 +  -2.4  -3.79906   CGTCCGGGTCGGCGG                 CGCG CGT CGGG                 TTGTTCTCCAGGTCG  55 308
JRI60_RS08330 1966353 .. 1966379 +  -2.9  -3.64703   GCACCCGCAGCCGCG        CCACGGTG-TCG TCGC CGTCCACCGTGA         TTTCAATGGGCCGGC  51 279
JRI60_RS08345 1973566 .. 1973604 +  -6.7  -3.12895   GGGGTTCGTCGTGCT  TGCTCCGGTGCAGTTGTT GACG AGC-ACGGCATCGGAGCC   TGTCTTCGTGCAGGA  49 511
JRI60_RS08360 NONE
JRI60_RS08365 NONE
JRI60_RS08370 1981038 .. 1981082 + -13.5  -2.87463   TCAAGCCACTTCGCG CTTGCCCTCGGTCCCCGCGG CGCCGT TCGCGGGGGCCG-GGACGGG TGTCTCGGAGAGCTT  69 45
JRI60_RS08415 1991863 .. 1991890 +   -17  -3.14132   CCGCTTGATGGCCTT        GCAGCCGGAGAG GATC CGCTCCGGCTGC         TTGATGAGCCGCAGC  80 249
JRI60_RS08460 2003233 .. 2003255 +  -7.6  -2.67441   AGATGTCCTACATTA           CCGGGAAAAG ATC CAATTCCCGG           TGCTCTCCTCAATTC  51 109
JRI60_RS08465 2005785 .. 2005833 + -22.6  -2.91144   ACGGAGCGCGGGTAC CACCGGGTCGG-CGAACCGCTGG AAGT TCAGCGGTTTGTCCGACCCGATG TCGTTTCCAGGATGA 100 47
JRI60_RS08470 2006996 .. 2007019 + -10.4  -2.98493   GCTGACGCTCACCTG          CCT-GGAGTGA CAC TCACTCCCAGG          TGATTTCGTAGTCCA  60 16
JRI60_RS08480 NONE
        maiA NONE
        hppD 2011092 .. 2011126 +    -4  -3.71848   CGGCCCTCAGCAGCT     CGCGCAGCCGGTCATC CAC GGCGGCCAGCTCGGCG     TTGTTCCTGCGGGCC  55 446
JRI60_RS08515 NONE
JRI60_RS08520 NONE
JRI60_RS08525 2018785 .. 2018829 +  -9.8  -3.61398   GCTCTTCCGGGCCGT CCGCGCGGATACGTCCGGGCG TGGA CGGCCGGACGGG-CCGCGGGC TTGTTCGACGGCGGG  67 42
JRI60_RS08530 NONE
JRI60_RS08535 2020100 .. 2020128 +  -2.9  -3.33261   CGCCGGTGCGCGCCT        TGCCCTCGCCGTG AAC CTTGGCCAGCGCG        TTCTCGAACTTGCGC  45 154
JRI60_RS08550 NONE
JRI60_RS08555 NONE
JRI60_RS08565 2026811 .. 2026853 +  -6.3  -2.56095   ACACTTCGGCAAGGT GGC-CCTGGCCTTC-CCCG GCTGATA CGGGAGGAGGTCATGAGCC TCCATTCCCTCTCCG  46 4
JRI60_RS08570 2027512 .. 2027522 +  -4.6  -3.64703   CGAGCGGCGGCTCTT                 CGGC GGG GCTG                 TTTGAATCCCACCCC  55 10
JRI60_RS08575 NONE
JRI60_RS08580 NONE
JRI60_RS08585 2030793 .. 2030807 +  -2.1  -3.78934   GTGGCCTGGGGCTCC              GG-GGA GAAC TCCACC               TTCTTGTAGAGGGAC  55 520
JRI60_RS08595 2031650 .. 2031666 +  -6.5  -2.86271   TGACGCGGCTTCCGG              TTGGCGC CGG GCGCGAA              TGATTGTAGTGCGAG  48 38
JRI60_RS08600 2033201 .. 2033232 +  -6.5  -3.40299   AGCGGCCGTGACGCA      GCAGCCGGTCG GCCAGCTCCA CGGCCTGCTGC       TTCTCCATGTGCTCC  53 254
JRI60_RS08610 2035055 .. 2035067 +  -5.5  -3.31144   GTCGCCGAAGCGCCA                GGATG ACA CGTCC                TTGTAGGCGTGGCGC  51 175
JRI60_RS08620 2037356 .. 2037368 +  -9.1  -2.82623   CCTGGCGCCCTGGGG                CGTGG AGC CCACG                TGGTTGTAGAAGCGC  51 412
JRI60_RS08650 NONE
JRI60_RS08655 2045041 .. 2045054 +  -2.3   -3.3482   CTCAGCGGCGGAGCA               CTTCC AGCA GGTAG                TTCATTGGGGCCTTG  44 58
JRI60_RS08660 NONE
JRI60_RS08665 2047546 .. 2047556 +  -6.8  -2.71731   GCACGTGCAGCACCT                 GCTG GGC CAGC                 TCCTTGAGCCGTCCC  46 95
        ppk1 2057314 .. 2057324 +  -6.8  -3.53444   TCGTGCATGCGCGAG                 TGCC CGA GGCA                 TTTCCCGGAAGATGG  56 204
JRI60_RS08720 2060613 .. 2060633 +  -3.9  -3.61398   CACGCGAAGATGGTG            GCGCACC TCTCCTC GCTGCGC            TTCTTCAAGCAGGAG  51 264
JRI60_RS08730 2062817 .. 2062831 +  -2.8  -2.57344   CGGCAGGAAGTACGC               GTGG GCCAGCA CCAC               CTTCTCCCGGGACTG  38 515
JRI60_RS08745 NONE
JRI60_RS08750 2065321 .. 2065348 +  -4.8  -3.21099   CCCTTGCCCTTCTTC        TCGTGACGCACCG TCA CGAT-CGTCCCGA        TTCCTCCTCGCACGA  47 173
JRI60_RS08760 2068194 .. 2068232 +  -4.3  -3.89346   GAAGAGGTTGCCATG   CCGGTCGAAGGCGGCTC CCATC GGGTTGCCGAAGGCCGG   TTTGTCCGGTGGCCC  61 455
        gltB NONE
JRI60_RS08775 NONE
JRI60_RS08780 2076077 .. 2076100 +  -4.4  -2.52543   GCACCCCGAGCACCA          ACCGGCTGCCC TCG GGGCC-CCGGA          TGCGTTGCACCGCCT  41 126
JRI60_RS08790 2078649 .. 2078695 + -16.6  -2.94144   GTCGTTCCCGTCTCC CGCGCGCGGGTCCGGTCGAGCG CCTGT CG-TCTCCCGGACCCGC-CGCG TCCTTTCCGTCCACC  79 40
JRI60_RS08795 2082816 .. 2082872 + -16.2  -2.57931   CTACTTGGGCTTGGA GGCGCCGCCGCAGCCCGCGGCACCGC AACCG GCCGCGCCGCAGCCCGCCGCGCCGCC CTTCTCCGGGGTGGC  77 63
JRI60_RS08825 NONE
JRI60_RS08830 2090205 .. 2090234 +  -2.7  -3.02626   TTGACCGTGAGCAGG       AGCTGGGGCAGCAG CTG CT-CGGCCTCGGCC       TGTCTCTCGCTCTTG  41 78
JRI60_RS08860 NONE
JRI60_RS08865 2103204 .. 2103221 +    -7  -2.71364   CCATTGCTTGACAGT             GGTTCG TGCCAT CGAACC              TCGTTCAAGCAATGC  48 151
JRI60_RS08870 2103787 .. 2103812 +  -5.9  -3.41878   TCGCACCCAGCTCCG         CCACGCGCGCC TGTC GGCCCGCTAGG          TTCTGGCTTCACGGA  55 1
JRI60_RS08875 2105457 .. 2105487 + -10.2  -3.28712   CTCGTGCCGCGGGTA       CTCGTAGCGCCAGG CCT CCCGGCGCACCGGG       TTGTAGAACAGGGGC  61 301
        dusB 2120589 .. 2120622 + -10.9  -3.35679   GGTGTGCAGGTAGGA     CGGCCGTCGCTGCCCG TCG CGGTCGTCGACG-CCG     TTCTCCGTCACCCAC  64 262
JRI60_RS08940 2122241 .. 2122266 + -19.7  -5.45813   TTCGAGCAGTTTGAA         CGGCTCGGCGG ACTT CCGCCGGGCCG          TTTTCTTTTTTCGTC 100 56
JRI60_RS08945 NONE
JRI60_RS08950 2124332 .. 2124352 + -13.9  -3.05384   GGCAGACGGTGGGCA            GGCGGGCGG GTT CCGCCGGCC            TTGAGTCCCGGGGGC  72 43
JRI60_RS08955 2125265 .. 2125299 + -11.3  -2.93381   AGAGAACCTGAACCT    GC-TGCTGCGGGGCTG AGTT CGGCCCCGCTGCCCGC     TGCTTTACCAATTTA  61 10
         pyk 2127007 .. 2127064 +  -6.3  -2.87146   ACAGCTCGACGTCGA GCTG-GCCGCTCTGGGCCTCGCGCTTGA GGATG TCGAGCGCGAG-C-TGGTGGGGCACGGC CTTCTTGTAGGGCCG  48 220
JRI60_RS08970 2129763 .. 2129788 +  -5.3  -4.08394   CGCCCTCGCGAAATG         CATGGGTTACG AGCG CGGAACCCGGG          TTTTCCAGGCCCTCT  64 497
JRI60_RS08980 2130020 .. 2130066 + -15.9  -4.56597   GTCTCCCCGACCATC TGAAGGGCGCGGAATCCTTGGA GAAA TCCTCGGGT-CCGCGCCCTTCG TTTTTCCGGAGCCAA 100 28
JRI60_RS08990 2137623 .. 2137640 +  -4.8  -3.85698   GCGAACCTCGCTAAA             GCCTTG ATTCCA CGAGGC              TTTCTCGAAAAAGCG  58 19
JRI60_RS08995 2138218 .. 2138245 + -19.2  -5.30616   TCCGCTCCATTCCAA        GGGGTGCACGCT CACG GGCGTGCACCCC         TTTTTGTTTCACTCG 100 51
JRI60_RS09000 2138814 .. 2138825 +  -7.2  -2.59683   TGTATACCTCTTCGA                GCGG AGTG CCGC                 CTTGTGCCGTGCACT  48 197
JRI60_RS09025 2143528 .. 2143548 +  -4.6  -3.56325   TGTTTTTCCCGCCGA           GC-CCCTCG GCGG CGTGGGTGC            TTCTCCTTGTCCCGC  52 91
JRI60_RS09030 2144375 .. 2144393 +  -3.8  -3.14344   CGCCCGCCGGGGGCA             TGACGCTT CCC GAGAGTCA             TTCCTCCGGAGCGTG  45 23
JRI60_RS09035 2145226 .. 2145244 +  -8.8  -2.85351   GTTCCCTCGGGAAGT             GCGCGAAG CGC CTTCACGC             TCTCCTCTGGAGGCG  53 489
JRI60_RS09055 2151913 .. 2151955 + -22.1  -2.55213   GACGGCGAGTAGCGC GAGCCGAGGGCGGAGGTCTC GTTC GAG-CCTCCGCCCTCGGTGC TCCGTTCGCTACCTC 100 29
JRI60_RS09090 2158673 .. 2158707 +  -6.5  -5.03145   GCAAGCCCCCAGTCT    TCTT-CGAGCCCCC GGGGGATG GGGGGCTCTCAAGA     TTTTTTGGGGGATTC  86 171
JRI60_RS09120 2165092 .. 2165117 + -11.9  -2.62184   GATTGTATGCCGTGC         T-TCCGGGGGCT TGA AGCCCCCGGGCA         TGGTCTACGACCCGC  61 39
JRI60_RS09130 2167770 .. 2167807 +    -4  -3.07895   ATCCGGGGGCTTGGC   GGGCTGGTCG-GTGAGG ACGGC TCGCGCACGACCGGCCG   TGTGTTAGAGCTCAC  44 45
JRI60_RS09135 2168828 .. 2168850 +    -9  -3.60419   ACCTGCTTGCGTCAG           GTACGCTGCC TCA GGCGGCGGGC           TTGTCCTTTCCAGCT  64 63
JRI60_RS09140 NONE
JRI60_RS09145 2171156 .. 2171182 +  -4.2  -4.78077   ACAGGTTGAGTTTAG         GCGCTGACCTGC TTG GTTGGCCGGTGC         TTTCTTTTGATTGCC  77 426
JRI60_RS09150 NONE
JRI60_RS09155 2173192 .. 2173203 +  -2.2   -3.4252   GCCGTATCCCCCAAG                GC-GC GTT GCAGC                TTCTCGTCCATGGGG  45 377
JRI60_RS09190 2187291 .. 2187316 +  -6.8  -3.71848   CCAGCTCCTCGAGCC         CGTCCGGCCTG TTCCT CATGCCGG-CG         TTGTTGATGAGCAGG  59 487
JRI60_RS09205 NONE
JRI60_RS09210 NONE
JRI60_RS09215 NONE
JRI60_RS09220 2192299 .. 2192324 +  -4.5  -2.99433   CCAGGCATGAGGGCG         CCGGTGAGCCC CAAT GCGCGCACCGA          TCTCTCCTATACTTC  45 31
JRI60_RS09225 NONE
JRI60_RS09230 2197703 .. 2197716 +  -3.7  -4.11281   TCCGCGTACCTGCCC               GGCTC GAGC GTGCC                TTTCTGCTTCTCCTC  61 242
JRI60_RS09240 2201532 .. 2201545 +  -3.7  -3.95584   GCGAGAGCCCACACT               CGCGC AGGC GCTCG                TTTACTTCCTGGCGC  59 370
JRI60_RS09250 2203161 .. 2203175 +  -3.4  -3.14132   CGCGCAGGCGGCCAT               GCACTG AGC CGGGGC               TTGATGCCCGAGGGG  44 19
JRI60_RS09255 NONE
JRI60_RS09260 2204802 .. 2204830 +  -8.8  -2.62184   GAGCGACCGGTCCAC       GCGCGGGCGCTCG CTGA CGAGCGAC-GTGC        TCATCTCCGCGGGGA  50 486
JRI60_RS09280 NONE
JRI60_RS09285 2210023 .. 2210036 +  -3.8  -3.14132   CGCGCGGCGAGGGCA               GGAG CGCGAA CTCC                TTCGTCAGCCGCGCC  45 55
JRI60_RS09300 2212995 .. 2213017 +  -7.7  -3.18383   TCCTTGTAGGTTGAA           GACATCACC GATTG GGGGATGTC           TTCGTGCATCGAACT  54 151
JRI60_RS09305 2215352 .. 2215376 +  -2.8  -3.44284   ACGACGACCTCGGCC         CGGAAGCGCTG GTGC CAGTCCT-CCG          TCTTCTTCGTCCCGC  48 191
JRI60_RS09315 2219482 .. 2219528 +  -7.8  -2.71011   GACCCGCGAGGTCGG GCGGGTGCTCCGGGGGAAGGG GCTCCA CGCGGCCCCCGC-GCATCCGC TCATTGACCCCCCGT  51 147
JRI60_RS09320 2219782 .. 2219796 +  -7.8  -3.84389   CGAAGTCCTGAGGCG               GTGGGC CCC GCTCAC               TTCTCTTCTTCGGTG  66 30
JRI60_RS09330 2220897 .. 2220907 +  -2.4  -3.28924   CCAGCGCCACCTCGC                 GCCG CGT CTGC                 TTGTGACGGAAGGTC  45 261
JRI60_RS09345 2224429 .. 2224477 +    -6  -3.57462   AGGCTGGCCATGGGC GGGGTTGTAACGTGGGTAGGGAAG GTT TTTCCC-ACCCTC-TCGCATCCCC TTTCCGCCTCGCCTG  56 516
JRI60_RS09435 2241781 .. 2241813 +  -9.9  -2.66435   GACGGCCCGCCTTCA     CGT-CCGCTTCGTC CGGACC GACGATGCGGTACG      TCGTCTCCTCGCCCT  53 215
JRI60_RS09445 NONE
JRI60_RS09450 NONE
JRI60_RS09455 2244630 .. 2244642 +  -3.3  -3.14463   GAGTGGCTCTTCGGC                CCCAG GCG CTGAG                TTCGTGGCGCGGGTT  44 14
JRI60_RS09460 2246026 .. 2246039 +  -3.7  -4.07687   GAGCGGCCGTCGAGC               AGGCC GTGT GGCCC                TTTTCCGGCCGCGCT  61 96
JRI60_RS09465 NONE
JRI60_RS09470 2248223 .. 2248258 +  -8.1  -3.05384   GTAGTCAGGCGTCCC    GGAGCGGGGCCCGTGC ACCTC GC-CGGGCCCCGGGCG    TTCAGTCGCGCGGAA  53 37
JRI60_RS09485 2250798 .. 2250808 +  -8.2   -2.8474   CCGTCACGCGGAACT                 CGGC CAG GCCG                 TCCTTCTCCATCAGC  53 335
JRI60_RS09515 2257876 .. 2257892 +  -8.7  -3.14132   GAGGTGGAGAGCGGG              TGAGCGG AAC CTGCTCA              TTCCTGGGGGCGCGG  56 23
JRI60_RS09535 NONE
JRI60_RS09540 2268824 .. 2268841 +    -4  -2.57026   CTCCTCCCGTGTCCC             CGCCGC GCGCAG GAGGCG              ATTCGTCTGCATATG  41 134
JRI60_RS09595 NONE
JRI60_RS09600 2281712 .. 2281730 +  -4.4  -3.92373   GCTTTCCGACGGATT             CGCTAGTC AGT GCCGAGCG             TTTCTCGGTCCACTG  61 113
JRI60_RS09605 2283581 .. 2283599 +  -7.3  -4.13767   GAAGTAATCGTCGTC             CGCTCGC CCGCC GCGTGCG             TTTTCCCGTGCGCGG  67 34
JRI60_RS09610 2284377 .. 2284412 +  -5.4  -3.43492   CGCGTGCTTCCGGGT    CGCCCG-CCCGGA TGTAACCGGAT TCCGGCTCGGGCG    TTATGGTGGGTATCA  53 9
        msrP NONE
JRI60_RS09620 2286037 .. 2286064 +    -9  -3.32963   GCTTCGGCCATCTGA        GGGGGGAGCGAC TCCG GACCCTCCTCCC         TTCTAGACTCCGCGT  61 26
JRI60_RS09625 2287322 .. 2287377 +  -8.9  -3.38812   TTCCACGCCGCCTGA GGTGGACGGGGAGC-C-CGCCTCCTCCG TCG CGG-GGAGGCGGGAGCGGCCCGCTCAGC TCTTCTTCGGCGGCG  60 26
JRI60_RS09665 2298232 .. 2298260 +  -5.1  -3.28712   TCGACTCGCTCACCA        CCCGCAGGAAGTC GTC GATGTCCAGCGGC        TTGTGCACCAGCCGG  51 49
JRI60_RS09675 2300426 .. 2300445 +  -8.6  -3.14564   GTTCCGGCCGGGGTT            CCTGGATG CTCC CATCTAGG             TTCCTGACCCGGTCC  56 7
JRI60_RS09680 2302188 .. 2302207 +  -4.2  -3.78775   GCGGCGGCGAACACC            CCGCGATGC AGT GCA-CGCCG            TTTCATGGTGCCCGG  58 394
JRI60_RS09710 2308382 .. 2308410 + -17.4  -4.56597   CCCCGCAAAGAGAAA        GGCCCGGCTCTC CTCGT GGGGGCCGGGCC        TTTTTCCGAGGCCAC 100 58
        fabI 2314016 .. 2314029 +  -2.3  -4.25104   CGAGCTCGCTTTTCC               CTCTG AAGC CCGAG                TTTTGATGCCCCCCG  62 57
JRI60_RS09735 NONE
JRI60_RS09740 NONE
JRI60_RS09745 NONE
JRI60_RS09750 NONE
JRI60_RS09755 NONE
JRI60_RS09760 2320397 .. 2320415 + -11.6  -3.21726   TGAGTCTTCCTGTTC             GCCGGCTC CTG GTGCCGGC             TTCGATCTTCTCCGC  68 38
JRI60_RS09765 2322065 .. 2322097 + -15.6  -3.64915   TCTGGGAAGGACGAA     GGGCCAGG-AGAGGG GAGA CCCTCGACCTGGCCC      TTGTCGTTTCTGGGG  85 49
JRI60_RS09795 NONE
JRI60_RS09800 2328884 .. 2328894 +  -5.4   -3.4252   CACCTGGAGCCCTCC                 CCAT GCA ATGG                 TTGTCGTCCATCCCG  53 148
JRI60_RS09805 2329716 .. 2329762 + -19.5  -3.41745   GCGGCCGCCGGTACC GGAGGATGAGTCGTCCGGGTG AGACG CGCCCGGACTACTCGTCCTGC TTCGTGTTCTCGCCC 100 4
JRI60_RS09820 2333218 .. 2333261 +  -7.4  -3.14132   GCTTTTCGTGTGTGC CGCTCAAGACCG-CCAGTGGA AGG TTCATTGTTCGGGCTTGCGCG TTGGTGGGCGAGAGG  54 352
JRI60_RS09830 2336228 .. 2336240 +  -3.3  -2.79183   AGGTTCTCCATCGCG                AGCTG CAA CAGCG                TCTCGTCCGCCTGGA  40 354
JRI60_RS09850 2340792 .. 2340806 +  -2.7  -3.02144   CGGACGGGGGGATGT               CCGCG TAGGC CACGG               TGTTGAGGGCGGTGA  41 288
JRI60_RS09860 2347161 .. 2347171 +  -8.2  -2.66316   TGCGTTCATCGGTGT                 CCCC CCT GGGG                 TGGTGTGGTGGGGCG  52 485
JRI60_RS09870 2347994 .. 2348021 + -10.4  -2.83894   AGGCTCAGCGGAACT        CGCGGGGCAGGC CGTG GCGGGCCTCGCG         TGTAGTGGTGCTGGT  59 449
JRI60_RS09875 NONE
JRI60_RS09880 2350551 .. 2350576 +  -3.9  -3.21934   CTGGAGGAGGGGCCC         CGGGTCGAAGCT GTG AGCCT-GCCCCG         ATTTTCTGGACACAC  47 85
JRI60_RS09885 NONE
JRI60_RS09890 2351972 .. 2351996 + -13.5  -2.98942   CCACAGTTTGAGGGT          GCAGGGGCAGC TGA GTTGCCCCGGC          TCTCTCTGGGCACCT  69 443
JRI60_RS09910 2357336 .. 2357363 +  -2.6   -2.7263   CGGGGAGCGGTGAAC        GCATG-AGCGTGC GGA GCACACTGCGGGC        CTTTCCCACGCTGCT  38 20
JRI60_RS09915 NONE
JRI60_RS09920 2358938 .. 2358952 +  -4.2  -2.90075   ACGTCCGCGAGCAGT               TGAGGC GGG GGCTCA               TGTGGTTGCCGAACG  43 23
JRI60_RS09925 NONE
JRI60_RS09930 2382099 .. 2382130 +  -5.7  -3.12351   ACGCCAACGAATAGA      GCGGACGCTCACT CGGGCA GGAGGGCGTCGGC       TTCGATCTCCACGAG  49 27
JRI60_RS09940 2384473 .. 2384513 + -21.3  -3.85698   CTCGCCGTGAGGGTG TG-GAAGAGGGCCGGGGG CGCAAT CCCCCGGCCCTCTTCGCG  TTTGTAGCCACCGAG 100 46
JRI60_RS09945 NONE
JRI60_RS09950 NONE
JRI60_RS09955 2386779 .. 2386811 + -17.7  -2.58677   CGTGGTGGATGTCCA      TGTCCGGAGCGGTGG AGC CCACCGTTCCGGGCC      CTTGCTCGTTGTCTG  85 88
JRI60_RS09960 2389552 .. 2389585 +  -2.1  -2.78596   CCGGTGGAGGATTTC     GGGTCTCCGTGCCGC CATC GTGACGCGGCGCCCA      TATGATGGGCGGATG  38 84
JRI60_RS09965 2392421 .. 2392434 +  -3.7  -3.59315   TAACAGCAGGCCCCA               CGGCC GCGA GGCCA                TTTCCGGATGGTTGC  53 446
JRI60_RS09980 2399525 .. 2399569 + -12.9  -3.05844   CCACCAGGTAGAGGT CCTCCTCGGG-CAGCCGGGGG TAGTT CTCCTGGCTGGCCCG-GAAGG TCTTCCAGTCCGGAG  66 421
JRI60_RS09990 2401361 .. 2401371 +  -2.4  -3.30124   TGAACTCGGCCCAGA                 CCAC CTC GCGG                 TTGTCCAGGGTGAGG  45 135
        ttcA NONE
JRI60_RS10020 NONE
JRI60_RS10025 2408017 .. 2408042 +  -6.7  -3.72893   CGCTCGCGAGCCTCT         GAGTTGCGCCG GGAA CGGCGAAGCCC          TTTACTCGGGGCATG  61 24
JRI60_RS10030 2408603 .. 2408640 +  -3.2  -3.36671   CAAGGACGCCAAGAA   GTAGCGGGCGCCTCAC GAGCGG GTGGGGTGACCGGGGC    TTCTCGGGTTCCGGT  48 22
JRI60_RS10040 2411645 .. 2411673 +  -2.3  -3.65529   TCGGCCAGTAACGGG       CGGCGTCTCCGG GGAGCG CCGG-GACTACG        TTTCCGTCCCGGTGT  51 30
JRI60_RS10070 2419436 .. 2419446 +  -3.2  -3.29144   GGGTGAGGGAGACGA                 GGAT GGC GTCC                 TTCTCGCGGCCCTGG  47 265
JRI60_RS10080 NONE
JRI60_RS10085 2422001 .. 2422037 + -10.8  -4.28432   GAACCAGCCTCGGTG   ACCGGCTCCTCTGCCGG TTGC CCCGCGGAGGA-CCGGC    TTTTCCCTTCACCTT  89 88
JRI60_RS10090 2424291 .. 2424304 +  -2.3  -2.86426   GGCCCCGGCGCCGCA               GCTCG TCCT CGAAC                TCCTTGTAGATGTTG  40 71
JRI60_RS10095 2425782 .. 2425815 +   -11  -3.14132   CAATAGGCAGGCCCT    GCG-CCTCGCCATGGC CAGC GCCG-GGCGGGGGCGC     TTACTGGAAGGCCGC  64 35
JRI60_RS10105 2432377 .. 2432409 +  -5.3  -3.52192   GATGACGCCGTCGTC      CTCCAGCTCGCGCAG CTG CAGCGTGAGCATGCG      TTGTGTGGCCTTGGG  53 460
JRI60_RS10115 NONE
JRI60_RS10120 2434946 .. 2434972 +    -5  -3.28712   TTGGCGTCAAGGAAT         CCGAGCGTGGGC AAT GTCGATCCTCGG         TTGTCGAAAGCAAGG  49 337
JRI60_RS10155 2442882 .. 2442896 +  -7.1  -3.34398   GACGGAAGCCCGAAG               GGGTC TCCAC GACCC               TGTTTCCACCGAGGC  54 54
JRI60_RS10180 2447360 .. 2447372 +  -4.7  -3.14344   GCGGCGCGCGGCCCT                CCTCG AAG CGCGG                TTGCTGGAGCGGCTG  47 182
JRI60_RS10200 2453762 .. 2453785 +  -6.7  -3.65902   GTGGAGACCCCTCCG          GCCGTGCGGA CTCCA TCCGC-TGGC          TTTGAGTAGGATCCC  61 319
JRI60_RS10205 2455150 .. 2455162 +  -5.5  -3.18264   CGAAAGGAATTCCAA                GGAGG AAG TCTCC                TTCCTGCCTGGCCGG  49 117
JRI60_RS10210 NONE
JRI60_RS10215 2456407 .. 2456421 +  -5.6  -3.26947   GGATCCAGGTCGAGC               CGCTCG ACA TGGGCG               TTCGTGTACGCGTTC  51 158
JRI60_RS10225 2459105 .. 2459133 + -13.1  -2.72855   GGGCAACCTCTATTG        GAAGCGGCGGG AATCGAA CCCGCCGCTCC        TCCTTGACCGGTTTG  67 476
JRI60_RS10230 2460562 .. 2460601 +  -4.8  -3.05384   GCGCCGCCCGTACCT  GCTCTACCGCC-GCGGGTG AGT CAGCCGCCGGTGGACGACC  TTGCATCGAGCACAA  45 7
JRI60_RS10235 2461365 .. 2461376 +  -4.4  -3.25192   CTCCCGTGAAGCCCT                TTCC CTGG GGAA                 TGTTCTGAACTTCCG  49 6
      aac(3) 2462201 .. 2462247 +  -7.2  -3.05384   GGCCTGGCTGGAGGA G-CACCACGGGGCGCGGTA-GGC GTTC GCCATCCCGCGCCCCG-GCCGAC TTCAGTGCAGCGCGC  51 7
JRI60_RS10265 2469109 .. 2469144 + -20.5  -3.85864   GTAACCGAGAGTCGG    GACGCGGGCCCCGGGG TGCAT CCCCGGGGCCC-TGTC    TTCTTCTACTGATGC 100 37
JRI60_RS10275 NONE
JRI60_RS10280 2476289 .. 2476301 +  -3.3  -3.30124   GGGTCGTGCGTGCAA                CTCGG CGG CGGAG                TTCTCGGGAATCACC  46 47
JRI60_RS10285 NONE
JRI60_RS10290 2478845 .. 2478861 +  -4.4  -3.46509   CCGGGATGCGCGGCA             CGAAGCC CTCC GGCT-CG              TTCGTCTTCTTCAGC  51 356
JRI60_RS10300 NONE
JRI60_RS10305 NONE
JRI60_RS10310 NONE
JRI60_RS10315 2483904 .. 2483916 +  -6.9  -2.70932   CAGTGACGGGTGCAG                GCTGG TCT CCGGC                TCGTTGAGGGCGAGG  46 205
JRI60_RS10330 NONE
JRI60_RS10335 2489269 .. 2489283 +  -4.2  -3.06796   GGGTATGGAGTGGGC               TCGGGT TCC ACCCCA               TTCACTCCGCTCCAC  44 94
JRI60_RS10340 NONE
JRI60_RS10345 2490639 .. 2490660 + -12.3  -2.78935   CCTCTGGGAGAGGGC           CGGGGTGAG GGTC TTCACCCCG            TCTCATCGGGCATCT  65 18
JRI60_RS10360 NONE
JRI60_RS10365 2494164 .. 2494192 +  -4.6  -3.18681   CCGCCTGACCATGAA       GCT-CGAGGCCC TCGCCCC GGGCC-CGCAGC       TTCGTCAGCTTCGCG  47 191
JRI60_RS10380 2498297 .. 2498309 +  -3.3  -2.89742   AGAAGCGCGCGGTCA                GCTCC TCG GGAGG                TGTCTCCCCATTGGA  42 166
JRI60_RS10390 2501831 .. 2501850 +  -4.9  -3.63515   GGGTGGCGGTGTTGC            CCGGCGT GCTGAG GCGCTGG             TTCTTCAGCGTCAGC  55 63
JRI60_RS10415 NONE
JRI60_RS10420 NONE
JRI60_RS10425 NONE
JRI60_RS10430 2512325 .. 2512356 + -10.1   -3.6682   AAGGGTCGCCGGAAC      CGCG-CGTGCCTCC CGAAA GGAGGCGCGACGCC      TTTCGCTGCGTGGAG  70 203
JRI60_RS10435 NONE
JRI60_RS10440 2515044 .. 2515061 +  -6.3  -3.14881   ACCAGCAGCACCGTG             GACGC-CT TGA AGAGCGTC             TTCATGGGCAGCTTG  51 443
JRI60_RS10460 NONE
JRI60_RS10465 NONE
JRI60_RS10470 2522401 .. 2522411 +  -2.4  -3.48276   GGGGCTCCGTTGGGG                 CGGC GAC GCGG                 TTATGTAGGGGACCG  46 48
        queG 2523511 .. 2523528 +  -6.9   -2.7898   CCGATATGCCGGTGC             CGGGTCC CTCC GGGCCTG              TCGTTCCCTCTTCAG  48 91
JRI60_RS10480 2523979 .. 2524028 +  -6.2  -4.02051   GTATCGGGCCCGTGC CACGCGCGTGTGACGCGTCGTC CCAGGT GCTGGCGGGTTGAACGCGCGGG TTCTTTGAGTTCCTA  64 68
JRI60_RS10485 2525436 .. 2525457 + -17.3  -3.06915   GCTCGGGCGCCGCCA           CCGGCTCCG CCCT CGGAGCCGG            TTGGATGGGCTCGGT  79 371
JRI60_RS10495 2527082 .. 2527094 + -10.5  -2.78216   CCCTCGGTGCATTGA                GGCCC GTG GGGCC                TACTTCCTCAGGCTC  57 26
JRI60_RS10505 2529347 .. 2529360 +  -5.9   -3.4072   TGATGGGGGTGTAGC               CGGCG ATGT TGCCG                TTCTCGTGCAGCGTC  51 254
JRI60_RS10515 NONE
JRI60_RS10520 2531358 .. 2531372 +  -9.2  -3.21593   ACCGCGCTGCTTTCC               CCCGTG GCG CGCGGG               TGTTATGGCGCGCTC  61 48
        mutM 2532338 .. 2532353 +  -2.4  -3.41602   CCTATGTCGTCCAAC              GCCCTG CTGG CGGCGC               TTCTCGTCGCCTCCG  46 115
JRI60_RS10535 NONE
        lysA NONE
JRI60_RS10545 2536570 .. 2536599 +  -4.9  -3.00498   CGACCCTCTCCCAGA       GGGAGAGGGACTA ACCC TGGTTCCTCACCG        TGTATGTCCCCTCTC  45 67
JRI60_RS10550 NONE
JRI60_RS10555 NONE
        folK NONE
JRI60_RS10565 2540465 .. 2540482 +  -8.3  -3.17051   CGACGACGTTGGTGG             CACCCGG CCGG CCGGGGG              TGTTGGTCATCACGA  56 366
         fsa 2542102 .. 2542135 + -15.3  -2.52464   GTCGCCCGGCAACGA     AGAGGCCACCGC-CCG TAC TGGCGCGGTGGCCTCG     TCGATTCAGCGCGGC  73 47
JRI60_RS10585 2545736 .. 2545789 + -12.5  -3.09516   GCTCCTTGCGCTTCC CG-GTTGCCGGAGCGGGGCGTTGAT GCGTAA ATCAACGCCCCGCGACG-CGGCGCG TTGCGTCATGAAAAC  69 57
JRI60_RS10590 2546655 .. 2546669 +  -4.2  -3.95725   CCAAGGTCGTCTGAC               GGGG CGTCGTT CCCC               TTCTTCTTCGAGATT  59 27
JRI60_RS10595 2547688 .. 2547727 + -20.8  -2.52896   GGAGCAGCAGTCCCG  GGAGGGGCGGTGGCGGGGA GAC TCCTCGC-GCCGCCCCTTC  TCCGTTGCGGGCTCA 100 49
JRI60_RS10605 NONE
JRI60_RS10610 NONE
JRI60_RS10615 2554841 .. 2554857 +  -3.5  -3.24411   CGAGTGCCTGTAGGT              CCGGAGC ATG GCGCGGG              TGTGTTTCGGCCGAT  47 28
JRI60_RS10620 NONE
JRI60_RS10625 NONE
JRI60_RS10630 NONE
JRI60_RS10635 2558980 .. 2559008 +  -8.7  -3.14132   CGGTGAGCGTGGCCC        TGAACTGGCCGAG CGT CACGGCCTGCTCA        TTGATGACGGGCAGG  56 379
JRI60_RS10650 NONE
JRI60_RS10655 2564855 .. 2564906 +  -4.8  -3.04792   CGCAGGAATTCCTCA TGGGC-GCGCCGTAGCGGCGCGCCC GTG GGGGGCGCCACCGTGCCTCAGCGCA TCTTGCGCATGGTGG  45 12
JRI60_RS10665 NONE
JRI60_RS10670 2567543 .. 2567564 +  -6.5  -3.14602   GCGTCGCATCCTCAC           CGCTGCAGG ATGT TCTGCACCG            TCTTGATGGCCTGGG  51 41
JRI60_RS10690 2572115 .. 2572128 +  -3.1  -3.17051   CTCCCGTGCCGTCTC               CGAGCG TGC CG-TCG               TCTTCCTGATCGGCG  44 59
JRI60_RS10695 2573454 .. 2573484 +  -6.8  -4.38712   ATCGGGTTGCGCCCC      GCCGCTCATGGCG CGATAA CCCCG-GAGCGGC       TTTTCTGGAGCTCCC  75 113
JRI60_RS10700 NONE
JRI60_RS10705 NONE
JRI60_RS10710 2576495 .. 2576516 +  -4.3  -3.86897   CGCACCTCCTCCAAC           TTCTCCCGC AGCC GCGCGAGCA            TTTCTCCCGACTCCA  58 180
JRI60_RS10730 2582181 .. 2582196 +  -3.2  -3.21747   GGTCTGCCGCTCCTC              GG-GGCT GAG GGCCTCC              TTGGTCCTCAGGTGG  45 85
JRI60_RS10745 2585979 .. 2586004 +  -6.8  -3.14344   ATGCCCGCCATGTTC         ACGTCCGACA CGATGA TGTCGGGCGG          TTGCTGGCGGGCCTG  51 273
JRI60_RS10755 2586845 .. 2586855 +  -4.6  -3.65224   CGGCCGAGGCTCACC                 GCCT GCC GGGC                 TTGTTCGGCTGGACT  55 107
JRI60_RS10770 2589093 .. 2589112 +  -4.2  -2.57132   CCCCAGCGCTGGTGG            GCCAGC-TC GAG GACGCGGGC            GTTCTCGGGCACCCG  41 54
JRI60_RS10790 NONE
JRI60_RS10795 NONE
JRI60_RS10800 2600082 .. 2600105 +  -4.5  -4.52589   CTCCGGCCACCCGCC          CACCCTGTC GGGTAG GATTGGGTG           TTTTCTGTCGGGCAG  72 69
JRI60_RS10805 2600416 .. 2600447 + -20.2  -3.66178   TCGATGACGGTTCGA      GGGCGCTC-TCCCCG GGA CGGGGATGGGCGCCC      TTTCCCATTCAGCGC 100 57
JRI60_RS10810 2601533 .. 2601546 +  -9.5  -3.16564   CGCACAGCGCCACCG               CGCGC TCGA GCGCG                TTGCTCAGCTCGCGC  59 292
JRI60_RS10820 2603893 .. 2603909 +  -2.1  -2.72344   CGCAGCTTCGTGCTG              CGTGGAT GAA ACCCCCG              TCGTTCGCAGTCCCA  38 17
JRI60_RS10825 2604627 .. 2604652 + -20.5  -4.05788   TGGGGCAACTGCCCG         GAGGGGCCTCG GTGA CGAGGCCCCTC          TTTCATTTGAGGGCA 100 55
JRI60_RS10850 2614673 .. 2614697 + -15.7  -3.15078   AGATACCCTCACCCC          CACCCTCTCCC GAG GGGAGAGGGAG          TCTTCGTCCCGTCTA  78 141
JRI60_RS10860 2618314 .. 2618337 + -10.2  -2.70932   GATGAGGTGGGTGGG          GAGGTGGGGG GGGA CCCTCACCCC           TCCTTGCGGGCCACG  57 36
JRI60_RS10885 2621347 .. 2621358 +  -3.6   -3.4072   CGCTCGGGGTACGGA                TCCG CGTC CGGG                 TTCTCGTCCAGGGTG  47 225
JRI60_RS10895 2623895 .. 2623950 +  -8.1  -3.73068   TGCCGGCGCAGCCCT GGGGCGCGGCCA-CCGCCTTGTCG AAGACGTAG CGGCTGTGCAGCTGGCCGAGCCCC TTGTTGAGTTCCGGC  65 251
JRI60_RS10920 NONE
JRI60_RS10925 2630618 .. 2630645 + -16.4  -3.99592   ATTCCGCATGCCCAA        TCCTGGGATTCC ACTC GGAGTCCCAGGA         TTTCTCATGCTGCGT  93 153
JRI60_RS10960 2637068 .. 2637098 +   -11  -3.31322   GCAGACATACGAAAA       CGCCACCTGCGACG AGC TGCCGCGGGTCGCG       TTCTCGAGCCTTACG  66 131
JRI60_RS10975 NONE
JRI60_RS10980 2641549 .. 2641566 +  -4.7  -3.12895   GAAGGCGTTCAAGAA             GGCTGGG AGGG CCGGGCC              TGTATTCCTCGAAAA  47 348
JRI60_RS10985 2643079 .. 2643091 +  -7.7  -3.34895   CGCCAGGGATTGAAG                CACCT TGT AGGTG                TTCGTTCCCGGTACC  55 181
JRI60_RS11000 2646948 .. 2646975 + -17.8  -5.42198   GCCTCCACTCTTCAG        GGCTCCAGGTTC TCCG GAACCTGGGGCC         TTTTGTTTTTTCGGG 100 123
JRI60_RS11005 2647871 .. 2647893 +    -9  -3.84406   CCGACTCTCCGCTCA           GCGCGGACTC GAA GAGCGCGCGC           TTCTTGTCCTGGAGC  67 108
JRI60_RS11015 2649392 .. 2649404 +  -4.7  -4.68994   CTGCTTCGGAGGCAA                CGAGG ACT CCGCG                TTTTTCACTCATGGT  77 405
JRI60_RS11030 NONE
JRI60_RS11035 2656018 .. 2656038 +  -9.6  -2.52896   CCTGGCAGGAACAGG            GGCCGACC TTCGC GGGCGGCC            TGGATTGCCAGCTGG  53 177
        rpsD 2657860 .. 2657870 +  -6.8  -3.38316   CTTGGTAACTGGGCG                 TGGC TGA GCCA                 TTACTTGCGTCATGC  56 168
JRI60_RS11050 2659474 .. 2659484 +  -2.4  -3.29829   TCGCCAGCGACGACA                 GGGC GAA GACC                 TTCTCGCGAGCTCTG  45 372
JRI60_RS11060 2662476 .. 2662493 +  -5.5  -2.57335   CGCCAAAGGACCGGA             GCAGAAG CTCG CTTCCGC              TGGATTCAGTCTTGT  44 167
JRI60_RS11065 2663762 .. 2663775 +  -5.9  -3.89903   TAGCGGGTGCAGGGA               GGGCG CTTC TGCCC                TTTGTAGGGCTCTTT  63 342
JRI60_RS11080 2667828 .. 2667842 +  -5.6  -3.28924   CGCCAGCCGGGATTA               CCTGCC AGG GCCAGG               TTCTCGCCGCCGGTG  51 452
JRI60_RS11105 2683284 .. 2683295 +  -2.2  -3.92373   TGTCAGGGGCGGCGC                CATC AGCG GGTG                 TTTCTGCCTGCGGTA  57 294
JRI60_RS11120 NONE
JRI60_RS11125 2688175 .. 2688185 +  -3.2  -3.28712   CGTTGGCGATGGAGA                 CGAG CAG CTTG                 TTGTGGGCGACGGCG  47 119
JRI60_RS11160 2694608 .. 2694621 +  -3.7  -4.03888   AGACGGGAACCACGC               GCAGC TCGA GCCGC                TTCTTGTTCTGGATC  61 137
JRI60_RS11200 2701137 .. 2701150 +  -3.1  -3.28791   GTGGCGGGCCAGGGG               CA-GCC AGG GGCGTG               TTATGACGCCGCGAT  46 79
JRI60_RS11205 2703280 .. 2703295 +  -5.4  -3.84639   GGCGCGGGCGGTGGC              GCCA-CC GGC GGCTGGC              TTGTTCTCGGTCTTC  60 504
JRI60_RS11220 2706355 .. 2706371 +  -5.8  -3.50853   CCCACTCCGTCACCT             GG-GGCG AGCC CGCCTCC              TTCTCGTTGAGCGCG  53 256
JRI60_RS11230 2709558 .. 2709571 +  -9.5  -3.61398   TCACCGCGTCCACCC               GGCGC TCCC GCGCC                TTGTTGGGAACGCAG  67 124
JRI60_RS11255 2713580 .. 2713596 +  -6.5  -3.56837   GTTCCGCTCAAGTAT              TCCGGAC TTC GTGCGGA              TTCTGATATTTCCGG  56 113
JRI60_RS11260 NONE
JRI60_RS11265 NONE
JRI60_RS11280 2720635 .. 2720657 +  -9.1  -2.57522   CTCGCCACGCAGGCA           CCCGAGGAG CAAGA CTCCTCGGA           CTTCGTCTACGTTCC  54 76
JRI60_RS11285 2721675 .. 2721685 +  -6.8  -3.29263   CGACCTCGAATGCCA                 GCTC ACG GAGC                 TTCTCCGGCCCATGT  53 520
JRI60_RS11295 2723775 .. 2723820 +  -6.7  -3.31144   CGCGAGCAGCCCGGG CGTGA-CGAGCGGGCCATCGGC GAG GATGACGGCGCGCTCGATGGCG TTCTCCAGCTCGCGC  53 284
JRI60_RS11385 2739843 .. 2739856 +  -2.3  -3.54424   GCGGGGCCGGGTCAT               GTCGA GCCA TCGCC                TTTGGAAGGGTGACG  48 65
JRI60_RS11400 2744524 .. 2744547 +  -2.4  -3.05596   GCGAGCGCGGCACCG          TGCGGATG-TC CAC GAGCGTCCGGA          TTCCGTGGGCCCGTA  41 464
JRI60_RS11415 NONE
JRI60_RS11420 NONE
JRI60_RS11425 2748364 .. 2748386 + -18.4  -3.61398   CGAGGGCGTCGTGCC           GCCCGCTCGG ACT CCGGGCGGGC           TTCTTCACGGAGGAG  95 303
JRI60_RS11445 2753086 .. 2753114 +  -3.8  -3.35996   CGCGTGAGGGGTGTA       CCGTGCGGGACAT GACC GTCTCCCGC-TGG        TTCTGGGTGCCCGTG  49 34
JRI60_RS11450 NONE
JRI60_RS11455 2754520 .. 2754544 +  -5.6  -3.28041   CGCACCACGTCTGGC         GCGCCGTCTGC TCGC GCTG-CGGTGC          TTCCTCGTTCCACTT  49 334
JRI60_RS11465 NONE
JRI60_RS11470 NONE
JRI60_RS11475 2759247 .. 2759269 +  -4.7  -3.73224   ATGTCACGGGCCCGC           CGTCGCGAG GGGGA CATGCGGCG           TTTCCTGGGACGTCG  55 257
JRI60_RS11505 2767205 .. 2767230 +  -3.1  -2.67747   AGCGCGAGAGGCGCA         CGGC-GCCGAGG GAG CCGCGGCCGATG         GTTGTCGTCTACGCG  40 180
JRI60_RS11510 NONE
JRI60_RS11515 2769345 .. 2769357 +  -6.2  -3.28712   GTCCACCAGGGCGTC                GGGC AGCGG GCCC                TTCTCCACGGCGCGC  53 123
        dnaE 2774979 .. 2775005 +  -8.6  -3.41602   TCGAGTTCGGCTGAG         CGCGCGGGCG TGGACGC TGCCCGGGCG         TTCTGCTCAAGTGGC  60 27
JRI60_RS11540 NONE
JRI60_RS11545 NONE
JRI60_RS11550 2782437 .. 2782466 + -17.1  -4.33417   TCGCTGATTGTTCGA       CAGGCCGCTCCGG GCTA CCGGGGCGGCCTC        TTTCTTCTGGATGGC 100 50
JRI60_RS11555 2783095 .. 2783124 + -16.4  -2.75064   CACCGGAGGGGGAGG       GCGCCCGTGGCC GGGGTG GGCCACGGGCAC        TGCTTCAGTCCGGGC  77 65
JRI60_RS11565 2786991 .. 2787021 + -16.1  -2.61681   ATTGGATTTTCGGCT      CGGGCGCGCC-GCC GCGG GGCAGGCGCGCCAG       CTTGTCGAATTGCCG  71 433
JRI60_RS11610 NONE
JRI60_RS11615 2803707 .. 2803729 +    -9  -3.14564   TGCTCGCGGGGCTGT           GCTGGAGGGC GTT GCCCACCAGG           TTGGTGACGACCTGG  56 331
JRI60_RS11630 2808574 .. 2808584 +  -2.4  -3.40403   CAGGAGGAAATGTAC                 CTCG GCA CGCG                 TTGTGCTCCGGACAC  46 124
JRI60_RS11635 2809217 .. 2809269 +    -6  -3.31144   CCTCGGGCGGCAGGT CGCGCTCCGTCACGTGGGGGCCGGT GGCC ACCG-CCACCGCGCGCATGAGGGCG TTCTCCAGCTCACGC  51 277
JRI60_RS11650 NONE
JRI60_RS11655 NONE
JRI60_RS11660 2818436 .. 2818452 +  -2.1  -3.65046   GGGCCTCGACGCGCT              CCAGGGC GAT GCCGTGC              TTCTTCGCGTACCAG  51 237
JRI60_RS11670 2819711 .. 2819744 +  -5.1  -3.37796   CCATCCTGTCATCCA     CCGCTAGTGGGGAGC GGGT GTTTCCCACATGCTG      TTGTACGTCCTGACG  53 72
JRI60_RS11675 2820767 .. 2820816 + -14.2   -3.1372   GGGAACGGAGGGCAC GGTGCCCGGGAGGGCG-CGCTCC GACGG GGAGCGGCACCCTCCTGGGCGGG TCTTCCTAGAGCATG  73 72
JRI60_RS11685 2822910 .. 2822951 +  -9.3  -2.98072   ACACCTCCTCGGTGG CGTCCAGCTCGTACCTGAG GATC CTCAGGTACTTGCCGTGCG  TGTCGTTCTCGTAGA  57 85
JRI60_RS11695 NONE
JRI60_RS11700 2826403 .. 2826449 +  -2.4  -3.06315   GCGCTGGCGGTACTC CGTGGAGGTGA-TGAAGC-CGTT GACG ACCGCGCTGTAGTCACCTCC-CG TGTTCAAGATGTTCA  41 79
JRI60_RS11710 NONE
JRI60_RS11730 NONE
JRI60_RS11735 NONE
JRI60_RS11740 2834852 .. 2834872 +  -6.8  -3.68936   CCCTTTTCCGGGATG           CGCCTGGCG GTCT CGTC-GGCG            TTCTTCACGTTGATG  59 464
JRI60_RS11785 NONE
JRI60_RS11790 2843846 .. 2843860 +  -4.2  -2.92267   GCGGCGGCACCGGTA               CCGG TTCCTTC CCGG               TGATTCCTTTCTCGG  43 8
JRI60_RS11795 2845720 .. 2845739 +  -5.6  -3.64487   ACACCTCCACCATGC            CGCCGTGC GCGT GCACGATG             TTGTTCACGATGTAG  57 139
JRI60_RS11810 2851657 .. 2851683 + -10.7  -2.82933   ATGAACGTCTGCCCG         CGCGGGCTCGG GGCCA CCGTGCCCCCG         TCTGCTCGGTTGCCC  61 495
JRI60_RS11835 NONE
JRI60_RS11840 2856292 .. 2856343 + -28.9  -5.00616   CATGCGGCCCGGCGG GAGATGCCGGCGGGAGGGTTCACC GATGA GGTGGGCCCTCCCGCCGGCG-CTC TTTTTTCAGGGCACG 100 94
JRI60_RS11855 2859760 .. 2859795 +  -6.7  -2.78816   CTGGGAACGTCCTCG    TCACCGTTCCCGGGC ACTTCA GGTCGGGCGCGGTGG     TGTCCTGGACGGTGA  46 334
JRI60_RS11875 NONE
JRI60_RS11880 2866224 .. 2866234 +  -6.8  -3.79906   GGTTCTTCTTCTCCA                 GCTC GTC GAGC                 TTCTTCTCGAGCTCC  64 272
JRI60_RS11890 NONE
JRI60_RS11895 2870184 .. 2870210 +   -10  -3.05844   CGGCGTCGGAGACGT         CCTGGCCGCGCT TGG AGCGGGGCAGGG         TCTTCGCGTCCACGA  57 81
JRI60_RS11905 2871255 .. 2871275 +  -8.9  -3.02511   CGGGCAGGGCCCGGT            CCCTGACGG CAC CCGTCGTGG            TGTTGGCCACCTGGA  54 78
JRI60_RS11925 2877953 .. 2877965 +  -4.7   -3.7791   CCCGAGGCCCTGCTC                GCGCG CAG CGCCC                TTTGATGGGTGGTTG  58 8
JRI60_RS11930 2879769 .. 2879811 + -14.7  -3.04792   GGCATGAGGGACGAG AAAGCCCCGCCGCACCTCG GCTCG CGAGGTGGGGCGGGGCGCG TCTTCGGGGTGCTCG  74 34
JRI60_RS11955 2887617 .. 2887642 +  -7.5  -3.61398   GAAGAAGTGACGCCC         CGCGGCGTGCCC GGG GGG-GCGCTGTG         TTCTTCGCGGACCGG  60 31
JRI60_RS11960 NONE
JRI60_RS11965 NONE
JRI60_RS11970 2890075 .. 2890087 +  -9.1  -2.86271   CTTCGTGCCCAGCAG                CACCG TGC CGGTG                TCCTTCTCCTGCCGC  53 415
JRI60_RS11980 2894483 .. 2894523 + -19.8  -2.63596   CCAGGACTGAAAACA CGAAGGGGGCC-TCCACCCG CGG CGGGTGGCCGGCCCCCT-CG TCGTGTCCGGTGGGC  93 31
JRI60_RS12010 2899744 .. 2899776 + -15.6  -2.52516   CTTTCGCGCATCTCG     GGTGTCCGCTCGCGT CGTC ACGCG-GCGGGCGCC      ATTCGTCATCCCAAC  73 148
        pilB NONE
JRI60_RS12020 2902703 .. 2902715 +  -3.3  -2.91264   GGATAGACTCGCGTC                CCCCT CGG AGGGC                TGTATGGCTGCAACA  41 61
JRI60_RS12025 2904004 .. 2904037 +  -6.5  -2.64616   CGTCTGGTCCTCGCC     GCTCCGCCCGAGGCG GACG CGCTTCGCACGCGGC      TGGTCTGGCTCACCG  46 51
JRI60_RS12030 NONE
JRI60_RS12035 2907034 .. 2907046 +  -6.2  -3.61398   GCTTCGGGCGGCCTA                GCGG AAGTC CCGC                TTGTTGAAGAGGAGG  56 57
JRI60_RS12060 NONE
JRI60_RS12065 2912879 .. 2912894 +    -6  -2.84298   GCGGAATCTGGCCGC              GCCCCC GGGA GTGGGC               TACTTCTGGGGTATA  48 42
JRI60_RS12070 2914457 .. 2914482 +  -2.4  -4.57073   CGGGGGATTGGCCGG         CTGCCCTGCG GGCTGG CGCGGAGCAC          TTTTTAGGAGGGCTC  67 151
        pilM 2915605 .. 2915623 +  -3.7  -2.74523   TCTCGCGCTTCGCCG             CCCGGGC GACAA GCTCGGC             TGATCTTCCCCCTGC  41 4
JRI60_RS12080 NONE
JRI60_RS12085 NONE
JRI60_RS12090 NONE
JRI60_RS12095 2920430 .. 2920443 +  -2.3  -2.99471   AGACGATCGCCCAGT               CGCTG TAGC CGGTG                TCTCTCTCGAGCTCA  41 18
JRI60_RS12100 2921196 .. 2921211 +  -4.6  -2.70932   CCCCTGGCCCTCCTA              CAAGGC GGCA GCCATG               TCCTTCCGCACGCAC  43 47
JRI60_RS12105 2921579 .. 2921603 +   -10  -3.71649   AGCTGTAGCCTGCCG         GGCGGACGGCGC AGC GCGCCG-C-GCC         TTTCCGCTTTGCAAG  70 33
         efp NONE
JRI60_RS12115 NONE
        accC 2924323 .. 2924363 + -13.3  -2.60244   GGCTCCCTCGGTTGC CCTTCACGCAACCCCCTG ATCCTG CGGGGGGTTGCG-GCGGG  TGGATTCCTTGACCC  67 44
JRI60_RS12125 NONE
JRI60_RS12130 NONE
JRI60_RS12135 NONE
JRI60_RS12140 NONE
JRI60_RS12145 2936365 .. 2936383 +  -6.6  -3.17723   GTGTCCAGTCGAAGT             CAGAGGGC ATG GTCCTCCG             TTCAATTCAGCCTGA  51 47
JRI60_RS12150 2937846 .. 2937867 +  -7.2  -3.05343   AGGAGCGTGGTGAGG           GCGAGGCC GCGCAG GGCCTGGC            TGTTACCGCTCTCGG  52 148
JRI60_RS12175 2941895 .. 2941932 + -18.6  -3.22475   AGACAGTGGCCCCTA   CAGGAGTCCCGCTC GCACATCCCG GAGCGGGACTCCTG    TCTTCTCGCACTCAA  93 73
JRI60_RS12180 2943202 .. 2943257 +    -9  -2.78463   CTCGGGAGTCACCCG CCCGCG-CACCTGGA-CG-CCTCGCCG CCAGA CGGCGTGGATGCTCCGGGTGTTGCGGA TGTCCTGGAGCGGAT  55 65
JRI60_RS12190 NONE
JRI60_RS12195 NONE
JRI60_RS12200 2949551 .. 2949571 +  -6.7  -3.28712   ACCGCCTGTACCACC            TCGCGGGTG AGC CGCACGCGG            TTCTCGAACGAGCCG  53 485
JRI60_RS12260 2961307 .. 2961336 + -22.9  -3.66908   GCTCGCCTGCCTTCC       GGAGGGCCGGGGC ATCC GCCTCGGCCCTCC        TTGCTTTTCGGGCGG 100 51
JRI60_RS12265 2962342 .. 2962390 + -11.6  -2.86164   TGGACGACCGGGGGC TCGGCGCTGGCGGTGGCCTCGAA GAGC TCCAGGGCCGCCTCC-GTGCCGA TGTCGTCCTTGCGGG  62 157
JRI60_RS12275 NONE
        ftsE NONE
JRI60_RS12285 NONE
JRI60_RS12290 2966697 .. 2966713 +  -4.3  -3.00498   CACGAAGTCATTGGA              CGGATTC CGA GGACCCG              TGTGTGTCCCCTCTC  45 47
JRI60_RS12295 2967953 .. 2967977 +  -4.1  -2.53911   GCGCATCACGCTCGG          GGGCTCGCC GGGGTAG GGGGCGCCC          TCCGTTCACGATTCG  40 10
JRI60_RS12300 NONE
JRI60_RS12305 NONE
JRI60_RS12310 2971365 .. 2971394 +  -3.3  -3.01791   CAGCGGCGCCAGGGC       GCACCGAGCGGCG CAGC CGCTGAATGGGGC        TCTTCGCGGAACAAT  42 3
        trxA 2971860 .. 2971874 +  -2.8   -4.1822   TGCTCTGAGCTGTGG               GAGG ATGGGGG CCTC               TTTCTTCCACTGAGG  63 33
JRI60_RS12320 2973319 .. 2973341 +  -3.3  -3.64599   TGGCCGCGTCGTAGG           CGATGCCGT TCAGC ACGTCCTCG           TTTCCGCTCTGGTCC  53 127
JRI60_RS12330 2975283 .. 2975311 +  -4.3  -3.28712   GAAGCTCGGAATCCC        CGTGCTCGCCGGC GAT GAAGGCATGCACG        TTCTGCACCGCCACG  49 445
JRI60_RS12355 2980642 .. 2980659 + -11.3  -2.60194   CCACTTCCAGCTCGA             TGCGCGA GGCA TCGCGCA              GTTGGTTGAAGGCCT  56 87
JRI60_RS12365 2982570 .. 2982599 +  -6.9  -3.72695   GGAGAGGGGTTGGGG       GCGCGGCGCGGCC ACAG GGCCACGGCGTGG        TTTGGTGGACACGCT  61 92
JRI60_RS12370 2983808 .. 2983818 +  -8.2  -3.18839   GGCTCCACTGCACGT                 CCCG GTC CGGG                 TATCTATTTGACAGT  56 93
JRI60_RS12375 2985784 .. 2985801 +  -2.6  -3.04792   CCACGAAGCCGTCCG             GCGTGC GTTGCA GCACGA              TGTTCACCGTCGTCC  41 269
JRI60_RS12385 2987120 .. 2987144 +  -9.1  -2.77523   TGGTGCGGTTCTGAG          CCGCCGGGGTC ACT GGCCCCGCAGG          TCGTCTTCCTGGCGC  55 27
JRI60_RS12395 2989744 .. 2989771 +  -3.2  -3.91897   AGTCCAGCACCAGCA        GCACCTCGTGGG GAGC CCCGGGAAGCGC         TTTGTCGATGACGCG  59 271
JRI60_RS12405 2992072 .. 2992086 +  -3.4  -4.83243   ACCCTTACCGGCCCC               TCGCGG AAC CGGCGG               TTTGTTTTCTGTGGC  80 289
JRI60_RS12425 2994602 .. 2994616 +  -4.2  -3.48276   GAGGCCCGTCAGCCC               TGAGGC CGG GTCTCG               TTCTCTCACCCCGAA  49 23
JRI60_RS12430 2994886 .. 2994913 + -19.8  -2.53911   CGCTGAAAGCGCCGA        GGGGGCGCCGCC GTCC GGCGGAGCCCCC         TGGGTTCGGGGTTCA  93 35
JRI60_RS12440 NONE
JRI60_RS12445 2998469 .. 2998481 +  -4.8  -3.05844   GGCAGCCCCGTCGAG                CGCT TGAAC AGCG                TCTTCAGGTGCGACG  45 241
JRI60_RS12455 NONE
JRI60_RS12460 3001171 .. 3001182 +  -3.6  -3.99374   AGGTCGAAATTCCCG                GGCG GTGG CGTC                 TTCTTCTTCATGGCG  59 241
        deoC NONE
JRI60_RS12485 3005345 .. 3005374 +  -2.1  -3.29511   TGAACAGACGGGGAA      GG-CGG-CACACG GCACCA CGCGTGACCGGCC       TTATGGAGGGGTGCA  44 65
JRI60_RS12490 3007121 .. 3007133 +  -5.5   -2.6462   GCAGCCGGAGGTGGG                TGCGT GAA ACGCG                GTATTTCGATGGGTG  44 19
JRI60_RS12495 3007835 .. 3007884 +  -4.7  -3.09492   CTACCAGCTCGCGGT GCCCTGGTCCGGC-AGCTCCACCG TGA CGGTGGTGCTCGTCAGCCCCACGC TCTTCACCTTGAAGC  47 65
JRI60_RS12520 NONE
JRI60_RS12525 NONE
JRI60_RS12530 NONE
JRI60_RS12535 3015452 .. 3015480 + -13.9  -2.73364   ACCCCAGCTGACCCT       GGGGCGGGAAGC CGTGCT GCT-CCCGCCCC        TCGTTCCCGTCGAAC  69 83
JRI60_RS12550 3019867 .. 3019879 +  -3.3  -4.07885   TGGGTTGGTGTAAGG                TCGTG GGA CTCGA                TTTTGGGAGGAGGTA  59 174
JRI60_RS12555 3020652 .. 3020662 +  -2.4  -2.79183   TAGTCCCGTGGGACG                 GAGG AGG CCGC                 TCTGATGGCAGTGCA  38 38
JRI60_RS12560 3021846 .. 3021858 +  -6.2  -2.87132   GTGTCGGAGGCGCGA                GGGC CCTGA GCCC                TCTGTCCGCGAGGCG  48 17
JRI60_RS12565 3022685 .. 3022726 +  -7.9  -3.54543   GGGCCCGCTGCCGCA CGGCACGCG-CGTGCGGT AGGGGAC ACCGCGCGACATGGGCCG TTTCAGGGCCTCGGT  60 7
JRI60_RS12570 NONE
JRI60_RS12575 3023887 .. 3023897 +  -4.6    -3.727   CGGTCACTCCTGATA                 GGCT GCG GGCC                 TTTCCGTCTCGTCGA  55 53
JRI60_RS12580 3025030 .. 3025068 +  -5.3  -3.70902   CGTCCCTCTCCCAGA  GGGAGAGGGT--TGAACCC CAG GGCTTCGCTACCCTCACCC  TTTCCCTCTCCCGAA  57 74
JRI60_RS12590 NONE
JRI60_RS12595 NONE
JRI60_RS12600 NONE
JRI60_RS12605 NONE
JRI60_RS12610 3033405 .. 3033426 +  -5.7  -2.91264   GGCGGGCGCGAGTGC           CCCCCCGAG GGGG CTGGAGGGG            TGTGTCCGTGACCAA  46 72
JRI60_RS12615 3035200 .. 3035222 + -19.2  -3.30798   GTGAGGGGGTTGAAG           GGTGGGGGAG CCG CTCCCCCACC           TGTTGCTTGGTTGTC 100 37
JRI60_RS12620 NONE
JRI60_RS12625 NONE
JRI60_RS12635 3040292 .. 3040338 +  -7.2  -4.37092   CCCTCCTACTGAGAC GCGCTGGCGGAGCAGGGGAGA CCTGGC TCTCCCTTGC-CTGCCCGACC TTTTCTGGAGAGGCT  75 29
JRI60_RS12640 NONE
JRI60_RS12645 3043668 .. 3043680 +  -4.8  -3.64703   CAGGTGACGGGCTGA                GGGA CTCCC TCCC                TTTGGCTACGGCGCC  55 26
JRI60_RS12665 3049615 .. 3049633 +  -4.4  -3.55714   TCAAGCCAGCGCCAC             CCCCCTAC ACT GGAGGGGA             TTCTGTGCTAGGTGT  52 153
JRI60_RS12670 3050487 .. 3050528 +  -6.4  -3.13403   AGCGCTGGGCCGCTC GGATGCCCCCACG-GGTGC ATGGG GCACCGCGAGGGTCCACCC TGTTCGTGGGAACGA  51 98
JRI60_RS12675 3050974 .. 3050999 +  -8.3  -3.66908   TAGGGCGTGAGGGGA         GCCGGGGCAC GCGAGTG GT-CCCCGGC         TTGATTTTCAGCGGG  65 38
JRI60_RS12680 NONE
JRI60_RS12685 3052596 .. 3052626 +  -3.3  -3.40403   TTTCCAGCGGTTGAA       TGTCTGTGTTCAC GCTTG GTGAACATGGAGG       TTCTCATGAGCAAGA  48 47
JRI60_RS12690 3053374 .. 3053418 + -10.5  -2.87344   GCCCGTAAATCCGCG CACGCACACTTCCCCTCTCCC CCT GGGAGAGGGACGGGGTGAGGG TATATCCACCCCGTC  59 33
JRI60_RS12715 NONE
JRI60_RS12720 3058999 .. 3059015 +  -2.1  -3.68529   GATAAGTGGCGCCGT              GTGGTGG TGG CCAACCC              TTTACGTCCTCCACT  51 293
JRI60_RS12725 NONE
JRI60_RS12730 3061706 .. 3061722 +  -5.1  -2.52896   CGTGAGTGGCACCAG              CGCGT TGAAGGC ACGCG              TAGCTTCGGGCCTCC  43 285
JRI60_RS12740 3063534 .. 3063550 + -10.9  -3.05816   GCTCATCCAGCGCGT              CTTCGAC CGC GTCGAAG              TTCCCTAACCCGTCG  62 1
JRI60_RS12745 NONE
JRI60_RS12750 NONE
JRI60_RS12755 3066443 .. 3066454 +  -2.2  -3.07043   TCTTCCTGCGCGCCA                CCTT CCTG AGGG                 TGTTCCCGTGATGCC  41 3
JRI60_RS12760 NONE
JRI60_RS12765 NONE
JRI60_RS12770 NONE
JRI60_RS12775 NONE
JRI60_RS12780 3072238 .. 3072253 +  -7.5  -3.43492   GCGAGTTGGGTAGGC              CGCCG AGCAGC CGGCG               TTCTCCTCGATGTGG  59 407
JRI60_RS12785 3075933 .. 3075943 +  -4.6  -3.85698   CTGCCCACCGTCATT                 CCCG CGA TGGG                 TTTGTCGCCGCACCA  58 486
JRI60_RS12800 NONE
JRI60_RS12805 3080193 .. 3080206 +  -3.8  -2.72991   ACTGCGGGTCGTGGC               CCTG CTCACC CAGG                TCCTTCGCCGTCTCC  40 104
JRI60_RS12815 3082711 .. 3082721 +  -8.2  -3.17392   TGTAGCGGAGCACCT                 CGCG CCG CGCG                 TTGGGTTCCGGCATG  56 203
JRI60_RS12825 NONE
JRI60_RS12830 3087285 .. 3087311 + -11.6  -3.14136   CCGGCTCCTTCTAAC        GCC-AGGGCCC TGTTCC GGGCCCTCGGC         TTCCCTCCTTCATCA  66 27
JRI60_RS12835 NONE
JRI60_RS12840 3089390 .. 3089403 +  -5.9  -3.02461   AGTTCGGATTGAACG               GGTGC TGCT GCGCC                TGTTCGGGAAGCTTC  47 500
JRI60_RS12865 NONE
JRI60_RS12870 3095266 .. 3095295 +  -9.9   -3.5393   GACCATCCAGTTGGC       CTCCACGCGCG GGTGGTAG CGCGCGGGGGG        TTTGGCGGGGGTGGT  64 332
JRI60_RS12880 NONE
JRI60_RS12885 3096535 .. 3096556 +  -3.7  -3.14683   CAGGTGCTGCAGACC           CAGGTGTGAG GAG CTCAC-CATG           TTCATCCGACGCTGT  45 17
JRI60_RS12890 NONE
JRI60_RS12895 NONE
JRI60_RS12900 NONE
JRI60_RS12905 NONE
        sctR NONE
JRI60_RS12915 NONE
JRI60_RS12920 NONE
JRI60_RS12925 NONE
        sctV 3104627 .. 3104644 +  -5.5  -4.19238   CGCGCTTGGGCTTCA             CGGGG ATGATCTG CCCCG              TTTTGGGGTTACGGC  69 164
         rho NONE
JRI60_RS12970 3114739 .. 3114770 +  -5.1  -3.84648   CCGGGACTCGCGCTG      CGAGGCGGCCTGCA GCGGG TG-AGTCCGCATCG      TTTCCTACTCTTCCC  60 4
JRI60_RS12990 NONE
JRI60_RS12995 3119092 .. 3119124 +  -4.8  -3.43568   TGATCTGAGCAAGCC      CCCTCTCCCC CTGGGAGAGGGCT GGGGTGAGGG      TCTTCATTTGTTGTC  51 33
JRI60_RS13000 3120480 .. 3120493 +  -9.5  -3.25102   CGAGCTTTCATTCGG               CGGCG GCGG CGCCG                TGTTCTGCGTCGGCT  59 169
JRI60_RS13030 3127130 .. 3127150 +  -3.1  -2.94912   TCAGGACCGATTCTC            CCCGCTCCT CGA GGGAGAAGG            TGTCTCCGTTGACGG  42 525
JRI60_RS13045 3130246 .. 3130267 +  -5.7  -3.29144   GGGCAGGTGCAGGGG           GATGCGCGG GTAG CGGCGCAGC            TTCTCGAAGGCCTGC  51 461
        mraZ NONE
JRI60_RS13065 NONE
        rsmH NONE
        ftsL NONE
JRI60_RS13080 NONE
JRI60_RS13085 NONE
JRI60_RS13090 3138909 .. 3138919 +  -2.4  -2.62983   TGGAGGGGGCCACTA                 GGTG CTG CTCC                 TCATCTACGAGTGGA  38 25
JRI60_RS13095 NONE
        murD NONE
        ftsW NONE
        murG NONE
JRI60_RS13115 3145325 .. 3145337 +  -3.3  -2.57243   GGCGAAGGGCGACTA                GGGCA TGG TGGCC                GTCTTCTCATCGTCC  39 25
JRI60_RS13120 NONE
JRI60_RS13125 NONE
JRI60_RS13130 3148178 .. 3148199 +  -5.1  -2.72144   AGAGGAGCGGGGCCT           CGGCGCAGTA AGG TAC-GCGCCC           CTTTCACGAGAGTGG  45 15
        ftsA 3149496 .. 3149527 + -15.1  -5.52384   TTTTGCAGTGACCCA      CCGGGGCCGCGTT CCTCCC AGAGCGGCCCCGG       TTTTTTTCGTGGGAG 100 55
JRI60_RS13140 3152323 .. 3152348 +  -4.5  -3.96469   CCAACAGCACCGCAC         CGGCGGGCCTC CAGG GCGTCTCGTCG          TTGTTCTTCAACTCT  61 470
JRI60_RS13165 3158226 .. 3158238 +  -2.6  -2.62616   CTCTTGCGTTGAGGG                GCCG GGCCG TGGC                TCATGTCGCGCGTCA  38 108
JRI60_RS13170 3159935 .. 3159953 +    -8  -3.04144   CTCTGCACCGCTCCG             CCGAGCGG ATA CTGCGCGG             TGTTGAGGATGGACG  53 1
JRI60_RS13185 3162840 .. 3162858 +  -2.2  -3.78934   CACCCCGGCCCGGTA             GTGCGCGC CCG GCACGTCC             TTGTTCTCCCGGCCG  55 521
JRI60_RS13220 3172364 .. 3172393 +  -3.3  -3.48276   TCCACGCCGTTCTCG       TTGCCGAACGACG GCGC CGCCGCCCGGCCA        TTGTCTGGCCAGCCG  50 133
JRI60_RS13260 NONE
JRI60_RS13265 NONE
JRI60_RS13270 3184122 .. 3184140 +  -6.7  -2.52464   TGCGGATGAGTGCGT            CCACC-CG GCGG CGAGGTGG             TCGCTTGCAGAGGGG  47 129
JRI60_RS13275 3191323 .. 3191350 + -19.9  -2.72463   AGAGGTGTGATGCAC        CCACCGCGCCG CACCGA CGGCGCGGTGG         TCCTTCCGCGTAAGT  93 92
        ftsZ 3192726 .. 3192747 + -11.5  -3.02511   GCCGTGAGGCGAGGG           CCCCGGTCC GCGA GGGCTGGGG            TCTTCCCGAGCTAGC  65 34
JRI60_RS13290 3194614 .. 3194627 +  -3.7  -3.59979   CGAAGCCGTAGCCAG               GGGCG GTGG CACCC                TTTCCACTCAACACG  51 30
JRI60_RS13295 NONE
JRI60_RS13300 3195914 .. 3195931 +  -6.3  -3.61398   TGCAGGTCCGCCTCG             GGGTCCTG CGA CAG-ACCC             TTCTTGGCCAGCGCG  59 261
JRI60_RS13315 NONE
JRI60_RS13320 3200634 .. 3200646 +  -4.7   -3.2614   CGACCAGGTGCTCGC                CTCGC TGC GCGTG                TTGCTGTAGCCCATG  49 4
JRI60_RS13325 NONE
JRI60_RS13330 NONE
JRI60_RS13335 NONE
JRI60_RS13340 3206177 .. 3206205 + -11.7  -3.29096   TGGGTTCCACGCCGA        GGCTTCCGTCC GTGTTCA GGGCGGGAGCC        TTCGTGCTTCCTGGG  68 112
        genX NONE
JRI60_RS13355 3210125 .. 3210147 +  -7.6   -3.8062   CGTGGGCGAAGCGCT           GGAGGGCGTC CAC GGCGTCCTCG           TTCTTCTCCCGATTG  65 344
JRI60_RS13365 NONE
JRI60_RS13370 3213082 .. 3213111 + -13.5  -4.15222   TGATGAAGAGCTCGA       GCTTCCCGCTGGC CGGG GCCAGCAGGATGC        TTTCTTCCCCGACAT  85 217
JRI60_RS13380 NONE
JRI60_RS13385 3216522 .. 3216539 +  -4.1  -3.21099   TCCACGTGGCGCTCC             GCTGG CTTGTCCT CCAGC              TTCGTCGTACAGACC  47 132
JRI60_RS13400 NONE
JRI60_RS13405 3221054 .. 3221084 + -13.3  -2.63596   GTTGGGCGTGTGAGA      GCGCC-CG-GGGTCC TCC GGGCCCGCGAGGCGC      TGGTGTCCCATGCGC  67 28
JRI60_RS13410 3221751 .. 3221763 +  -2.6  -3.06796   CCGCCCTGTATCGGT                TCCG CTCGT CGGG                TTGAGTACACTGGAG  41 9
JRI60_RS13415 NONE
JRI60_RS13420 3226135 .. 3226192 +  -4.9  -3.01244   ACGCAGGTCGGGTCT CGA-CGGGAGGG--TTCGCGG-AGCCCGC CCCG GCGGGCGGCCGTGAAGGCCCTCGGGCTCG TCGTTCTCTTTCTCC  45 144
JRI60_RS13430 3228400 .. 3228441 +  -7.1  -2.54193   ATCTGCGTGCCCGTG AGGGCCGTG-CGTGGCGTCT CGG AGGGGCCGCGTCCCGGTCCA TCCCTTGCACTGCTC  47 84
JRI60_RS13435 3229197 .. 3229207 +  -8.2  -2.75481   CGGCGGCCACCCGCT                 CCGC GAT GCGG                 TCCTTGCGCTTGAGC  51 259
JRI60_RS13450 3231667 .. 3231678 +  -7.2  -3.05844   TCCTGCTCTGGAGGC                CGCC CGGG GGCG                 TCTTCCGGTAAGAGC  51 3
JRI60_RS13455 NONE
JRI60_RS13460 3235349 .. 3235371 +  -6.8  -4.08945   GGTGAAGTACACGCC           GTGAGCCCGG GGT CCGGGCGCGG           TTTTCAGCAACTGGT  67 22
JRI60_RS13495 3240711 .. 3240725 +  -5.7  -3.69323   GGAGCGCGGGTGACG               CATGC CTCGC GCATG               TTTCGCTCCTGGTCG  57 56
JRI60_RS13500 3241403 .. 3241423 +  -2.4  -3.17194   CCATGAGTTCCTCGA            AGCGCTGG CGGGC TCGGCGCA            TTAGGTTGGACAGGT  42 1
JRI60_RS13505 3242075 .. 3242085 +  -4.6   -3.7732   GACGCTTGCAGTCGA                 GCTC GCG GGGC                 TTATTCATCTCGAGC  58 121
JRI60_RS13525 3246254 .. 3246266 +  -5.5  -3.63515   GCGCTGCACGTTGAA                GGTGC CCT GCATC                TTCTTCGAGGTGGAG  57 269
JRI60_RS13535 3248341 .. 3248386 + -21.3  -3.53444   GTGAGGGTCATCCCG CCCG-AGGGCCTCTTGTTCCAC ACC GTGGAGCAGGAGGCCCTTCGCG TTACTTCTTGCAGGG 100 74
JRI60_RS13555 3252822 .. 3252854 +  -3.4  -3.17051   GGGCCCGTGGATGTC      CCCTCTCCCT CTGGGAGAGGGCT AGGGTGAGGG      TCTTCCTCCTGGAGC  44 75
JRI60_RS13575 NONE
JRI60_RS13580 3259832 .. 3259843 +  -5.8  -3.28924   CCCGCTCCGCTCACT                CCGT AGTC ACGG                 TTCTCGGGGCCGCTC  51 20
JRI60_RS13595 NONE
JRI60_RS13600 3266739 .. 3266750 +  -5.8  -2.72379   CCCCTGGACACCGGA                CGAG TCCC CTCG                 TCCTTCCACCATTGA  45 148
JRI60_RS13605 3269601 .. 3269624 +  -4.6  -3.23216   AGTAGTCGGACGGCT          GGGCT-CCT GGTAGAG AGGCAGCCC          TTGCTCGTACTCGGA  49 36
        tsaD NONE
        rsmA NONE
JRI60_RS13620 3272158 .. 3272169 +  -7.2  -2.72463   CGTCGTTTCGGTGGA                CGCC GTGC GGCG                 TGGTTCCAGCTCGAT  49 255
JRI60_RS13630 3273108 .. 3273152 +  -5.6  -2.52464   TTAGAGTGTCCTGGA CGGCTGCTCC-CGTCGATCCCC CAT GGGGA-CTGCGAGGGGTGTCCG TCGATTCACCGCGGG  44 99
        panB NONE
JRI60_RS13640 NONE
        smpB NONE
JRI60_RS13650 3276087 .. 3276143 + -16.5  -2.79915   GGGAGGCCGGCTGGC TTCCGGTGAAGGTGCCCTTCCAGGGCT TGT AGCCCTTGTGCGTCACCTGCACCGGGA TGTCCTGGGGTGGGT  72 86
JRI60_RS13685 NONE
        nusA NONE
JRI60_RS13695 3284967 .. 3284999 +  -2.6   -3.4398   TAGTAAGGAGCGGCC     GGGGGGGAGTGGGTG TTAG CACC-ACTCGCACAC      ATTTTTGGATTAGGG  46 38
        infB 3288389 .. 3288401 +  -6.9  -3.14564   TCACCGGAACGCACC                CGGTG GCC CGCCG                TTCCTGGCGCGGTCA  52 64
JRI60_RS13705 NONE
        rbfA NONE
        truB 3290352 .. 3290367 +    -6   -2.8294   GACGCTAGAGGTTGA              CCGCCC GCAC GGGCGA               TGCTTATAAGCCCTC  48 100
        rpsO 3290763 .. 3290796 +   -16  -2.71144   GTAGGCCCGCTGTCA     ATCGGGGCGCTGGC GCAGAA GTCAGCGCCCCGAG      TCGTTCCAGGCAGTC  75 37
         pnp 3293423 .. 3293440 +  -5.5  -3.53811   CTCGGGTTCAACCTG             TACCTGG TGCC CCAGGGA              TTTGAAAACCGTGAC  54 113
JRI60_RS13770 3303141 .. 3303153 + -10.5  -3.83568   GGACCGGAACGGCTA                GGCCG CGG CGGCC                TTCTTGTACGTCTCG  74 25
JRI60_RS13790 NONE
JRI60_RS13795 3306921 .. 3306935 +  -7.8  -2.96695   CGCCGGCGCGTCGAG               CAGGCC CTG GGCTTG               TAGTTTCGTAAAGGA  53 8
JRI60_RS13800 3308050 .. 3308060 +  -2.4  -3.63515   GCGCCTTGGCCTGCC                 CCTG CAG CCGG                 TTCTTCAGGATGCCG  51 311
JRI60_RS13815 3311912 .. 3311934 + -12.7  -3.15544   CGACGCGGCGGTTCT           TGGCGCGGC CGAGC GCCGTGCCA           TTGGTCGCGATGGGC  67 208
        ssrA 3317225 .. 3317252 + -21.4  -5.38054   GCCTCCACTCTTCAG        GGCCCCAGGTTC TTCG GAACCTGGGGCC         TTTTTCTTTGTCGGC 100 31
JRI60_RS13855 3320873 .. 3320889 +  -6.5  -3.09273   CATCTCCTCCAGCGC              TGAGCAG GCG CCGCTCA              TGTCTCTTCCCCAAG  51 107
JRI60_RS13860 NONE
        tnpB 3322372 .. 3322400 +  -2.4  -3.54459   CAAGCCCCGGAACGA       GACT-GGGTATCC CTAC GAATCCCCAAGTC        TTTCCAAGGACTTGA  48 347
JRI60_RS13875 3323592 .. 3323626 +  -3.6  -4.12532   GCCGAGGATTCGGAG   CTGCCG--CTGCGCGGG TTGC CCCGCGGAGGACGG-AG    TTTCTCTGTGAGACA  61 217
JRI60_RS13885 3325856 .. 3325901 + -20.4  -3.07895   CCCCTTGGGGAACAC GCC-GGCCCTGGCCGCCCTCC CATGA GGAGCGCGGCAGGGGCCTGGC TCTCTTGGCCCTGGC 100 482
        istA 3332955 .. 3332973 +  -2.3  -2.87132   GAGAGTCTTCCTCCC             CCTCGGG CAGTC CTCGAGC             TCTCTGCCCCGGGGG  40 44
        istB 3333835 .. 3333847 +  -3.3  -3.14132   CCAGCGTCGCTCCGC                TCCGA TGA TCGGC                TTCGTCCGGAACAGG  45 47
JRI60_RS13960 3345388 .. 3345422 +  -5.7  -3.28712   GCGACGAACCTCGCG    GCGGC-CGGCGGCGA GCTCAAG TAG-CGCCGCGCCGC    TTCTCCGGAGGGCCG  51 73
JRI60_RS13965 3346511 .. 3346566 + -10.2  -2.72344   CTCAACACCACGAGG CCTGGGGTGGCCCTCGCGCCGGGGC CAGGCGC GCACCTGC-CGTGGGCAGGCCCAGG TGCTTCAGAATCGCG  57 434
JRI60_RS13980 3348339 .. 3348354 +  -2.4  -4.05004   ACCCAGGCCAAGAAG              GCTGCG CGCC CGTTGC               TTCTTCTTCTCCTCC  58 137
JRI60_RS14005 NONE
JRI60_RS14010 3359342 .. 3359359 +  -3.4  -2.64099   GACGGCGCGGGATAC             CGAGAGC CGCTC GCTC-CG             CTTCTCCTGGGAAGC  39 523
JRI60_RS14015 3362019 .. 3362038 + -12.8  -3.16881   AACCCAGCGTGCGGT            CCGCGGGC AACG GTCCGCGG             TTGCTCGGCTGGCTG  67 389
JRI60_RS14035 NONE
JRI60_RS14040 NONE
JRI60_RS14045 3365147 .. 3365163 + -12.3  -3.28924   GCCGGAAGCCCTGCC              CCTCCTG GCC CAGGAGG              TTCTCCGCCGGAATC  67 423
JRI60_RS14055 NONE
JRI60_RS14060 NONE
JRI60_RS14065 3370261 .. 3370295 + -12.9  -3.22476   TCCGGTCCGGGTGTC    GGCC-GACGAGGGCCGC GCT GCG-CCCTCATCTGGCC    TTCCTCCTCGATAAT  73 106
JRI60_RS14090 3376299 .. 3376325 + -17.3  -5.27023   ACTGGAAGTAAAGAG        CCCCGGG-CGCC ATCA GGCGACCCGGGG         TTTTCTTTTTCCGCT 100 40
JRI60_RS14140 3388011 .. 3388034 +  -2.4  -2.80935   GCGTCCACGCGGGGT          CTCATC-CCTG ACA TGGGTGATGGG          TCTCATCCCTGACAT  40 15
JRI60_RS14145 3388985 .. 3388999 +  -2.1  -3.28712   GCCAGGGACGGGGGC               TCATC ATCGA GGTGA               TTATGCGAACCCGGC  44 118
JRI60_RS14150 3390741 .. 3390761 + -11.2   -3.0497   GGCGCGCGATCGCGT            GAGCGAGA AGGGG TCTCGCTC            TCTTGCCCGTCGTCT  62 322
JRI60_RS14160 3392108 .. 3392121 +  -5.9  -3.51924   GCCTCGCGAGCCGGG               CCGGC ACCT GCTGG                TTGTCTGCCTGGAGG  56 164
JRI60_RS14200 NONE
JRI60_RS14205 3404235 .. 3404268 +  -4.3  -3.73775   CGACGCCGTGAGACA     GTGGGGAAGGCTCGG AGCA CCGTGATGTCCCCTC      TTTCGTCCAGGTACC  55 1
JRI60_RS14210 NONE
JRI60_RS14215 3407211 .. 3407234 +  -5.3  -2.87344   ACGTGCACCGGCGCT          GACCCGA GCTTCGCTCG TCGGGTC           TCTCTGGACGCAGTC  46 50
JRI60_RS14220 3408098 .. 3408124 +  -4.3  -3.11316   GGCTGGGAGGAGGAC         CGCATCCCC TCTCAGCTC GGGGGGGCG         TCTGTTGCATGCTCG  47 286
JRI60_RS14225 3408755 .. 3408768 +  -2.3  -3.83998   GGAGAATGTCAGGGA               TGGGC ACAT GCCAA                TTTCATGTACAGTAA  54 348
JRI60_RS14235 NONE
JRI60_RS14240 3410829 .. 3410839 +  -2.4  -4.42386   GAAGAATTCAACCAG                 CAGC GTC GCGG                 TTTTCTCGGTACGGC  65 109
JRI60_RS14245 3411884 .. 3411909 + -14.7  -4.14739   AGCTACAAAACGAAA         GGCCCGGTACC GGAC GGTAGCGGGCC          TTTTGCCATCAGTGC  89 40
JRI60_RS14255 NONE
JRI60_RS14260 NONE
JRI60_RS14265 3414625 .. 3414653 + -20.3  -2.82623   TCCGGTGCGCTAACA        TGGCGGTGGCCGC GGC GCGGCCGTCGCCA        TCCTTCTCCCGGACG 100 42
JRI60_RS14270 NONE
JRI60_RS14275 3417190 .. 3417221 +  -7.9  -3.31144   CGTCGACGATCACAT      GGTCGGCG-CCCGC CTCGC GCGCGACGGCGACC      TTGTCCGCGTGCGAC  55 452
JRI60_RS14290 NONE
JRI60_RS14295 3419457 .. 3419479 +   -12   -3.5882   CGTAGAACACCACCA           GGGTGACACC GAC GTTGTCACCC           TTTCGCAGTCGTCTG  72 131
JRI60_RS14300 3420495 .. 3420517 + -10.4  -3.63228   CGAATTCGAGCAAGA           CCCCCGCCCC TGG GGGACAGGGG           TTCCTTTCTCATGGG  70 330
JRI60_RS14305 3421452 .. 3421471 +  -4.8  -2.53015   CTGCCAGACTCGTTT            CCGCCGGC TGGA GCATGCGG             TGCATTGAGCAGTCT  42 91
JRI60_RS14310 3423452 .. 3423466 +  -7.8  -3.12351   GAAGCCTCGGCGCTG               GTGCTC GCG GGGCAC               TTCGCTGTAGAAAGA  54 88
JRI60_RS14315 3426532 .. 3426544 +  -6.9  -3.31322   GGCGGATGTAGTCGC                GGGCC CCG GGTCC                TTCTGGACCGTTGCC  54 519
JRI60_RS14325 3430802 .. 3430829 + -17.8  -5.42198   GCCTCCACTCTTCAG        GGCTCCAGGTTC TCCG GAACCTGGGGCC         TTTTGTTTTTTCGGG 100 74
JRI60_RS14330 NONE
JRI60_RS14335 3433546 .. 3433579 + -10.1  -3.25823   GAAGCGCTTGAAGAG     GCCGAGCTTTCCGCC ATAG GGCGGGTAGCGCAGC      TTCATGTCGAGCGCG  63 98
JRI60_RS14385 NONE
JRI60_RS14390 3447101 .. 3447113 +  -3.3  -3.55071   AAGCAGGTCATCCAG                GAGCT GTC AGCGC                TTTGAGCAACTGTGC  49 8
JRI60_RS14395 NONE
JRI60_RS14400 3448991 .. 3449029 +   -18  -3.02263   GCACTCGCTGTAATC   ACCGCGGCCTCTGGCCGG ATT CAAGCCGGAGGCCGCGGC   TCTTCCCGGAGATCT  86 28
JRI60_RS14410 3453445 .. 3453490 + -11.7  -3.05844   GGGGCGGGCTCGTTT CGGGCGAGCGCCACGTCGAGGA CCT TCGCCGCCGCGGCG-TCGTCCG TCTTGAAGTCCCGCA  63 234
JRI60_RS14435 3457791 .. 3457806 +  -4.6  -2.70932   CATAGGACGCATGGG              GGCCCT GTGG AGGGCG               TCATTCAGCGGGGGG  43 151
JRI60_RS14490 3469572 .. 3469611 + -11.2  -3.61398   TGAACGCTCCCCATA  CAAGGTGGGCGTGCCCCG GTGA CGTGGCTCTCCCGCCGTG   TTGTTAAAGCGGGAA  70 138
JRI60_RS14510 3476692 .. 3476702 +  -4.6  -3.50853   CGGAGGTGACGGAGA                 GCTC GAC GGGC                 TTGTGGTTGCCGAAC  51 337
JRI60_RS14525 3484117 .. 3484129 +  -5.5  -3.13403   TTGAAGTCCGACGTG                CCGAT GTA GTCGG                TGTTGATCGGCACCG  47 384
JRI60_RS14540 3489743 .. 3489759 +  -5.8  -2.77416   GGCTGGCCGAACATC              CCCTCG CGCAT TGAGGG              TGCTATCTTCCTGCT  45 12
JRI60_RS14545 3490607 .. 3490628 +  -4.3  -4.13995   TCTGAGCAGCATCTT           CCG-GGCCGG GGA CCGGTAGCGG           TTTCGTTTGTAGACG  62 7
JRI60_RS14550 3492494 .. 3492506 +  -2.6   -2.9518   TGGGTAGGCGTGGGC                CGGG AGCGC TCCG                TGTCTGGATATTCCC  41 202
JRI60_RS14555 3492978 .. 3492998 +  -4.6  -3.08813   CGGCGGGTTCGAAGC            GCTGCTCG ACGCC TGAGCCGC            TCTCTTCCAGTGGGC  47 10
JRI60_RS14560 3493517 .. 3493528 +  -2.2  -3.06183   CAACCCGTAGTCAAA                GCTT GGCG AGGC                 TTCCATGCGCGTGAA  41 75
JRI60_RS14565 3493812 .. 3493866 +  -5.5  -2.88544   GGAGCGTGTTACTGA CGTCCCACGCCCCCAGCCCCAGG AGAACCGGA CCTGGGGCTGGGGCAGTCTCACC TCTCTCGGCATCGGC  46 26
JRI60_RS14570 3495283 .. 3495317 +  -4.1  -2.84051   ACGCTTCGACAATCA    CTTCCGCGG-TCCAGC CCCT GTTGGTTCCGCGGCCG     GTTTCGTCGCAATCG  42 126
JRI60_RS14585 NONE
JRI60_RS14625 3513176 .. 3513193 +  -4.1  -2.78384   ATGCCGGTTCTATGG             CGTGC GCGATTAG GCACG              TCTCCTCGAAACAAC  41 13
JRI60_RS14630 3515354 .. 3515409 +  -8.9   -3.4072   CCACCTCCGCGTCCA GCCACGCCTTGCACGCGAGCACCTCGC GCCG GCCGGGC-TTCGCGTGC-AGGCGCTGC TTCTCGTCCCCCGTC  58 319
JRI60_RS14645 NONE
JRI60_RS14650 3521956 .. 3521989 + -13.1  -3.28712   CACTGGGTACAAGTG     GACGAGGTGCCAGCC TCGC GGCTGGCACTTCCGC      TTGTACGCAAGGGAG  73 190
JRI60_RS14655 3522814 .. 3522836 + -19.2  -2.78679   AGGCGGTGGCCGAGG           GAGGGGGCTC CTC GAGCCCCCTC           GTTTCAATCCGGGGG  93 108
JRI60_RS14700 3537448 .. 3537463 +  -3.2  -3.24924   GTGATGCCATTGCAG              CGGGTGG AGT CC-TCCG              TGTTCTCAATGGCGA  45 302
JRI60_RS14710 NONE
JRI60_RS14715 NONE
JRI60_RS14720 3545538 .. 3545550 +  -3.3  -2.54896   GTAGGCGTCGGACCG                GCCTG TTA CAAGC                TCAGTTCCGTGGACG  39 114
JRI60_RS14725 3546113 .. 3546128 +  -5.4  -3.33696   GATCATCGACGCCGC              GCCCGAG TAG CT-GGGC              TTCGTTCACCACGAA  51 16
JRI60_RS14750 NONE
JRI60_RS14755 3554210 .. 3554238 +  -4.5  -3.69323   GCAACTGCCCGTGCG        GGTGATTCCGG CCTGACA CCGGAACCACG        TTTCCCTGGTGCTCG  55 10
         tpx 3555254 .. 3555264 +  -8.2  -2.90901   CGACGCGCCGAAGGA                 GCCG ATG CGGC                 TGTCCTTGAGAATCT  53 484
JRI60_RS14895 NONE
JRI60_RS14900 NONE
JRI60_RS14905 3581086 .. 3581096 +  -2.4  -2.73364   GCAGGCGCTGGAGGA                 ACGC CAG GCGG                 TCGTTCCACTCGGCC  39 276
        tadA 3583387 .. 3583403 +  -6.5  -3.29043   TGGTTCCGGCTCCAA              GGAGTAG TCG CTCCTCC              TTCTCCCCGAGCATT  53 19
JRI60_RS14925 3586021 .. 3586034 +  -4.5  -3.40403   TCGCCGTGGCCCGGA               GCGCGC GCA GC-CGC               TTGTCCTGGGGCGGC  49 360
JRI60_RS14950 3593090 .. 3593107 +  -4.8  -3.19246   CCGTGGGCAGCGCCG             CCAGCC CCTCGA GGTTGG              TTCCATTCACCTTCG  47 491
JRI60_RS14960 3596175 .. 3596233 + -13.8  -3.06671   CCAGCTGATCAGCAC CCGGTTGGCGGCGGAGCCCGCACCGGC CTTGAT GTTGTTGTAGGC-CCGCTGCCAAGCGG TCTTGAACTGCGTGT  69 503
JRI60_RS14975 3598740 .. 3598753 +  -3.7  -2.87132   TTCGTGGACTCCCCC               GCTGC CTCC GCCGC                TGTCTGAGGCAGACG  43 5
JRI60_RS14980 NONE
JRI60_RS14985 NONE
JRI60_RS14990 3603999 .. 3604009 +  -2.4  -3.75024   GGACCTGGGCGTGCC                 GCTC GAT GTGC                 TTCTTGATCCTGAGG  55 332
JRI60_RS15000 3606342 .. 3606400 +  -3.7  -2.68545   CCTCCACCAGCTGGA GCACCTGCTCGTAGCCGGC-ATCGCTGTG GGG CTC-GTGGTAGCCGCCCGGGACCAGGTGC ATCTTCTTGTCCGGG  39 98
JRI60_RS15015 3609607 .. 3609622 +  -6.1  -2.72344   GCCCAGCCGCTCCTG              CGGCA GCTCCG TGCCG               TCCTTCCCGGTGAAG  46 404
JRI60_RS15025 3612960 .. 3613000 + -18.2  -3.85698   GCGGTAGTCGAGATT  GAGCGGCGGGCGGCTCTC CGGAA GGGGGCCGCCCGTCGTGC  TTTCTACCCGGCGCG 100 50
JRI60_RS15060 3630971 .. 3630993 +  -9.8  -3.40403   GGCGCGTCCAGGGCA           CGCGCATCAC GTC GTGGTGCTCG           TTGTGGTAGCCGACG  61 271
JRI60_RS15075 3634127 .. 3634145 +  -6.7  -3.86346   GGCCGAACACATCCG            GCCC-CTG TGAG CAGTGGGC             TTTCTGACGCACTCG  64 16
JRI60_RS15080 NONE
JRI60_RS15085 3636982 .. 3637033 +  -9.9  -3.18429   CTCCGACTGGCGGGG CCGGACCGTGGCCGTGCGCTGAG GCATGA CGCGGCGCGTCGCCTGGGTCTGG TTGCTCCGCCTTTTC  62 4
JRI60_RS15090 NONE
JRI60_RS15105 3641367 .. 3641379 +  -4.7  -2.62184   CGATGACGGGGGCAT                CGGGC AGT GCCCA                TCCTCTGCGGGAACC  42 112
JRI60_RS15110 3642518 .. 3642561 +  -7.2  -2.70932   CGACCCGCGCCTTGC CGTCCTTGTCGACCTCGAGCC GCA GGCGCG-GGTTGCCCTGGGCG TCGTTGAGCACGACG  49 155
JRI60_RS15125 3644859 .. 3644884 +  -4.6  -3.05384   GGGAGATCAGCGCGT         CTGACGGCGG TCGCTC CCGCCCTCAC          TTCAGTGGGCGACGG  45 22
JRI60_RS15135 NONE
JRI60_RS15140 3649223 .. 3649244 +    -8  -2.73364   TGAGCGGGCCCCGGG           GGAGG-CGG CCCGC CCGTCCTCC           TACTTCGCGTACCGC  51 38
JRI60_RS15165 3654336 .. 3654352 +  -5.8  -2.90075   CCGCGGGAGCATCCT             CGC-GGC CAGG GCCAGCG              TCTGGTTGAGCAGCC  46 94
JRI60_RS15185 3660652 .. 3660683 +  -3.6   -3.1372   GGGGTGGGAGTTGCG      CGCCATGTCCACTCC TCG GGAC-GGAGCTGGCG      TCTTCCTGACAGCTG  45 505
JRI60_RS15195 3662150 .. 3662160 +  -2.4  -3.47349   GGGCCAGCATGAACG                 CGAG GGG CACG                 TTATAGATTTCCCCC  46 68
JRI60_RS15200 3663031 .. 3663049 +  -2.2  -2.83249   TCGCGGCCGCGCTCG             CCGGGGGC TGA GTCCCGAG             TCCTGTTGTCTGGCA  40 15
JRI60_RS15205 3663718 .. 3663740 +  -3.2  -3.55487   TGATGACGTCCGGCA           GCGCCTCGGC GGT GGGGAAGCGC           TTGTGGTTCATGTGC  50 158
JRI60_RS15240 3669992 .. 3670013 +  -5.8  -3.62046   CTTGCGCGCGTACGT           CCTCTCCC GTGACA GGAAGAGG            TTCTTCGCCAGCTGC  57 463
JRI60_RS15265 NONE
JRI60_RS15270 NONE
JRI60_RS15275 NONE
JRI60_RS15280 NONE
JRI60_RS15285 NONE
        cheB NONE
JRI60_RS15295 NONE
JRI60_RS15305 3686982 .. 3687009 +  -6.2  -3.39327   CAGCAGCTCCATGCG        GACCAGGCGGCGG GCC TCGCCG-TGGGTC        TTGTCCATGTCGCGC  53 78
JRI60_RS15340 3695244 .. 3695254 +  -8.2  -3.66018   ACTCGGCGGTGATGG                 GGCC CCG GGCC                 TTCTTCAGGTAGTCC  64 192
JRI60_RS15350 NONE
JRI60_RS15365 3699704 .. 3699737 +  -6.6  -2.78596   GCGCTCGGAGCGCCG     GACGCGCTGAGGGGC GCCTG GTCCCTC-GCCCGCC     TGTCCTCCGGACATA  47 16
JRI60_RS15370 3700296 .. 3700306 +  -2.4  -3.28924   CCTGGAAATCCACCT                 CGTC GTA GTCG                 TTCTCCAGCACCGTG  45 70
JRI60_RS15405 3712417 .. 3712445 + -16.7  -3.06501   ACGGGTACCCTCTCC        CCGTCCCTCTCCC GGA GGGAGAGGGGAGG        TTGACTCGGCGTATG  79 76
JRI60_RS15410 3714717 .. 3714749 + -11.3  -4.14243   TCTCCCTCTGGGAGA     GGGCCGGGGTGAGG GTCATG CCTC-TCCTGGCCC      TTTTCGCGTCAAATG  81 55
JRI60_RS15415 3715459 .. 3715471 +  -4.7  -2.87344   CGCTGGCCTGCCCGG                CGCAC TGA GCGCG                TGTCTCAACCCGCTC  44 18
JRI60_RS15425 3717344 .. 3717365 +  -4.3  -3.59979   GTGGAAATGGTGCGC           GGGTTCTCC GGCA GGTGAACCA            TTTACCCTCACCCCG  52 8
JRI60_RS15445 NONE
JRI60_RS15450 NONE
JRI60_RS15455 3722111 .. 3722122 +  -5.8  -3.47227   ACGCCGTAGGTCCAC                GTGG CATG CCAC                 TTGTCGTGGTTGAGC  53 459
JRI60_RS15470 NONE
JRI60_RS15475 3727339 .. 3727352 +  -3.7  -3.83026   AGGTAGACACTCCCC               GGCGG GGGC CCGCG                TTTCCTGTGGCGGGC  57 35
JRI60_RS15480 NONE
JRI60_RS15485 3730579 .. 3730593 +  -4.3  -3.14344   CGGTGCAGCGCCGCG               TGGAA GTCCA TTCCA               TTCATCCGCGGCATC  47 225
        uvrA 3740295 .. 3740314 +  -5.6  -3.50869   CTCGGGGGCGGTGAG            CGGGC-CGG TCT CCGTGCGCG            TTGTCTCCGCTCCTG  54 27
JRI60_RS15510 NONE
JRI60_RS15515 NONE
JRI60_RS15520 NONE
JRI60_RS15525 NONE
JRI60_RS15530 NONE
JRI60_RS15535 NONE
JRI60_RS15540 NONE
JRI60_RS15545 NONE
JRI60_RS15550 NONE
JRI60_RS15555 NONE
JRI60_RS15560 NONE
JRI60_RS15565 3761480 .. 3761510 +  -6.7  -3.36273   GTTGGAGAGGTAGAC      GCGGCCGCGCGCGT TGAG GCGCGC-CAGCAGC       TTCGTGTTGAACGCA  53 381
JRI60_RS15575 NONE
        nrfH NONE
JRI60_RS15585 3767025 .. 3767056 + -14.4  -2.70932   GGTCCACGCCGATGA      GGCCGTGGCGGG ACACCACG CGCGCCACGGCC       TCGTTGAAGGAGGCG  66 207
JRI60_RS15595 3768766 .. 3768780 +    -7  -3.48276   CGGGCCATGAAGATG               GCGAGC CGC GCCCGC               TTCTGTGGAGGCAGG  56 186
JRI60_RS15615 3771313 .. 3771326 +  -4.5  -3.18274   GCTCGCGCCATGACT               CCGAGG TCT CC-CGG               TTGAGTTGCCGTCGG  47 56
JRI60_RS15620 3772392 .. 3772415 +  -7.3  -2.59742   TGCGTCCCTGGCAAT          CGGTCCCGG TGAGCT CCGGGGCGG           CTTGTCCCACTTCCA  48 447
JRI60_RS15630 NONE
JRI60_RS15635 3775112 .. 3775122 +  -8.2  -3.01712   ACTCCTCCGCGCTGG                 CGCC GTA GGCG                 TATTGGAACACCGCC  54 269
JRI60_RS15645 NONE
JRI60_RS15650 3776622 .. 3776651 +  -6.3  -2.62184   GGGAATCATCGGTAG       GCTGC-GGAGCCCC TCT GGGTCTCCAGGGGC       TCGTCTCCCCAGCCA  46 26
JRI60_RS15655 NONE
JRI60_RS15660 NONE
JRI60_RS15665 NONE
JRI60_RS15670 3781838 .. 3781873 + -14.6  -3.56558   ACTCACTTCTTGTCC    GGGACCGGCTCCTGCG TCTT CGGGGGAGCCGGATCC     TTCTCGTTGATGTTG  81 40
JRI60_RS15680 3783585 .. 3783604 +  -2.8  -2.70932   GCCGGTCGTGGCTCA            CGAAGAGCA TCG TGCCC-TCG            TAGTTGGCCAGCGCC  39 184
JRI60_RS15705 3791617 .. 3791649 +  -4.8  -3.73072   GAGGGACGGGGTGAG     GGTA-TGGGGTGTAC TCGG GTTCCCCCCAGTGCC      TTTGCTCCACGGGTT  55 148
JRI60_RS15720 3794086 .. 3794098 +  -9.1  -3.04144   TGCGCCGCCGCCTTC                GCCTC GGC GAGGC                TCTTCAGCGTGGCGA  54 190
JRI60_RS15735 3796604 .. 3796650 + -15.1  -4.90266   GAGGTGAGGTAACCG GGCGGGGCGG-TACACTGACCA GACA TGGCCGGTGTTTCCTCCCCGCC TTTTTCGTTACTGCC 100 55
JRI60_RS15740 3803115 .. 3803149 +  -3.5  -2.62616   GGCCAGCTCGGGCAG    GCGGTATGAGAGCTCC AGGT GCAGGTC-CATCCCGC     TCATCTCCGGCATCA  40 267
JRI60_RS15760 3809540 .. 3809552 +  -3.3  -3.21099   AGTCCATCAGCAAGC                GGGTG CGG CAGCC                TTCATGGTCGGCGAA  45 340
JRI60_RS15770 3813348 .. 3813368 + -15.5  -3.14132   CGCGCTCGGGAGCAA            CTGGTCCGA CAG TCGGACCAG            TTCGTCCGGAGCGCG  78 80
JRI60_RS15775 3814544 .. 3814561 +  -3.3   -3.4052   AGAGGCGGCGATGAC             GCGGTCA GGTG TGGCGGC              TTGCTTCAATTGCCA  48 27
        pbpC 3818457 .. 3818477 +  -6.7  -3.93782   GCGTTCCGCCCCTCA            CCCGGCTGC CTG GCATCCGCG            TTTCCTGTTCCGTCC  66 169
JRI60_RS15790 NONE
JRI60_RS15795 NONE
JRI60_RS15800 3820724 .. 3820752 +  -6.7  -2.62616   CCTCCGCTCGCTCTC       CGAGCG-GAAGG ACTGAG CCTCCGCGCTCG        TCATGTCCGGCATCA  47 10
JRI60_RS15805 3821375 .. 3821420 +  -4.5  -3.21099   TGGAGCCCACGGCCG TCAGCCGCTC-GTCCACCAGCA GGG TGCTGGCGTGCAGGGAGGCCGG TTGGTACTCCCAGAG  47 353
JRI60_RS15815 3823527 .. 3823540 +  -5.2  -3.63515   CGCGGTGGAAGGGTC               CGCC ATAGCC GGCG                TTGTTCACGATCACC  57 513
JRI60_RS15840 NONE
JRI60_RS15845 3831694 .. 3831704 +  -2.4  -3.64703   GGAGCTGTCGGCGTG                 CCAC GTA GAGG                 TTTCGCTGCGCCACG  51 107
JRI60_RS15890 NONE
JRI60_RS15895 3841409 .. 3841432 + -12.4  -3.55444   CGCGATCGGTAACAT          CCGCTAGCGC CCAC GCGCTGGTGG           TTTCACGGGTCCGGC  74 19
JRI60_RS15900 NONE
JRI60_RS15905 3842377 .. 3842387 +  -6.8  -3.12351   GGTCGAAGGCCGAGT                 GAGC GGC GCTC                 TTGGGTCTCGGGGAA  52 24
JRI60_RS15910 NONE
JRI60_RS15915 3843674 .. 3843703 +   -15  -3.32769   CGTCTGCTTCTCGAA       GGGCGTCTCCTC GGATGA GAGGGGGCGCCC        TTCCTCGTTTCCCGC  78 54
JRI60_RS15920 3844569 .. 3844583 +  -2.1   -3.1733   AGGCCCAAGCAGTAA              CGCGAG TCCT CTC-CG               TCGTTTTCTGGAAAC  42 26
JRI60_RS15925 NONE
JRI60_RS15930 NONE
        sctN 3848166 .. 3848176 +  -4.6  -3.04322   GGAAACCGTCCAGAA                 GCTC ATC GGGC                 TCTTCGAGGATTAAC  45 1
JRI60_RS15940 3848722 .. 3848735 +  -9.5  -2.87944   CAGCGCAAGTAACCT               CGGGG TTCC CCCCG                TCTGGTCTGGTGGTG  56 29
JRI60_RS15945 NONE
        sctQ 3851225 .. 3851237 +  -9.1  -3.03124   GGGCAGGGCAGGGGG                GACCG TGG CGGTC                TCTTGCCCGATGCAC  57 133
JRI60_RS15955 3851903 .. 3851923 +  -8.1  -2.70932   CCTGCCCAACCGAGC            GGCACCCAG CCG CCGGGCGCC            TGATTAGAGACGACC  51 2
        sctR NONE
        fliQ NONE
JRI60_RS15970 3853848 .. 3853862 +  -4.9  -2.59191   GACGCGGTACAGCTG               CTCGG CTGAT CCGGG               GTTCTCGCCATGTCC  42 17
        sctU NONE
JRI60_RS15980 NONE
JRI60_RS15985 NONE
JRI60_RS15990 NONE
JRI60_RS15995 3856953 .. 3856993 + -17.6  -4.84359   AGGCCCTGGATGCAG CAGACGGCGGGTGCC-CGC GAGA GCGTGGCACCCGCTGTTCG  TTTTTGTGGCCCTCG 100 67
JRI60_RS16000 3857741 .. 3857781 + -17.6  -4.12188   AGGCCCTGGATGCAG CAGACGGCGGGTGCC-CGC GAGA GCGTGGCACCCGCTGTTCG  TTTTGGGGGTCCTCG 100 67
JRI60_RS16005 3858545 .. 3858585 + -17.6  -4.12188   AGGCCCTGGATGCAG CAGACGGCGGGTGCC-CGC GAGA GCGTGGCACCCGCTGTTCG  TTTTGGGGGTCCTCG 100 67
JRI60_RS16010 3859359 .. 3859386 + -20.6  -4.54727   ACCGTGATACAACAG        CGGGTGCCCGCG AGAG CGTGGGCACCCG         TTTTCATTTCGAGGA 100 77
JRI60_RS16015 3859991 .. 3860029 + -19.7  -2.67021   CTTTGCACGGCGATC  GCCCCGGTGGGGGATGCT TCCG AGCATCTCCT-CCGGGGC   ATTCGTGTTTCACGG  93 42
        sctV 3862880 .. 3862909 + -22.9  -2.87647   CGAGCCGTTCATCCC       CCGCCCATCCGCG AGCA CGCGGGTGGGCGG        TGTCGTGTCGTGGCT 100 57
JRI60_RS16045 3866584 .. 3866618 +  -9.3  -3.35679   GCGCCGCGGCCACCA    GCAGCGTCCACTTCTC GTCC GAGAGGTGGGC-CGGC     TTCTCCATGGCCAGC  61 90
JRI60_RS16065 3872639 .. 3872659 +  -7.5  -2.82635   GCCGCACCGCCGCCA            CCCGCATCT ACG AGGTGCCGG            TCTGATGCTCCAGGT  52 0
JRI60_RS16070 3873950 .. 3873961 +  -3.6  -3.02144   TGCTCAGAAATCCAA                GCGT TAGA GCGC                 TCTTCGCCGCGCTCG  44 19
JRI60_RS16075 3876431 .. 3876445 +  -7.2   -3.5399   CCTGAATAATGATAA               TGAGAA CCA TTCTCA               TTATCTGAGTGTCGT  58 129
JRI60_RS16080 NONE
        dhbC NONE
JRI60_RS16090 NONE
JRI60_RS16095 3881224 .. 3881236 +  -3.3  -3.53012   ACGAGGGGTCATCCC                CTCAC CGT GTGTG                TTTCCCCCCAGGGAG  49 49
        mxcG NONE
JRI60_RS16105 3886986 .. 3887021 +  -4.6  -2.72661   GCTCCACTCTCTCCG    AGACCTCCAGGTCCGGG CGG CCTGAACC-GGAGATCC    TCCTTGACAGTACTG  43 1
        mxcH NONE
JRI60_RS16115 3890926 .. 3890954 +  -3.8  -3.28712   GCCTTCTCCTTCCTC       CAGGTTCGCTGAG CCGT CCAAGCG-ACCTG        TTCTCCGCCGCGGGG  47 14
JRI60_RS16120 NONE
JRI60_RS16125 NONE
JRI60_RS16130 3893005 .. 3893042 + -11.3  -3.14344   GGTCCGGTTCAAGCG   TCGGTGAGGGGGATGACG GGC CGTCG-CCCCCTGGCTGA   TTCGTCGGGAGGCTC  64 19
JRI60_RS16135 NONE
JRI60_RS16140 3898233 .. 3898249 +  -4.4  -4.57569   TTTTCCCATACATTG             GGAGGCG CATT CGC-TCC              TTTTTGGAGCGGTGG  75 168
JRI60_RS16145 3902576 .. 3902587 +  -5.8  -3.28712   GAGGCTCTCCCACAG                CTCG CGCA CGAG                 TTGTCCGCGCACCAG  51 310
JRI60_RS16210 NONE
JRI60_RS16215 3920624 .. 3920651 +  -7.6  -3.22102   CAGTCGTGGCAGAAT        GC-GGGGGCGATG GAG CAGCGCGCCCAGC        TGTTGTCACGGCTGT  56 104
JRI60_RS16220 3921256 .. 3921294 +  -7.2  -3.08679   CCCTCTCCGACAAGA   CAGGGATTGGCCTCGCGC CAT GCGCGGTGGCTGTCCGTG   TATTCCCTGACAGCC  52 52
JRI60_RS16225 NONE
JRI60_RS16230 3924728 .. 3924761 +  -5.2  -3.44848   TAGGAGACCACCTGC     CCGCCCT-TGCGCAC CGCGC GCGCGCACAGGGTGA     TGTTTCCTCCGCCAA  53 367
JRI60_RS16240 3926648 .. 3926664 +  -5.1  -3.05463   CTCCTCGCGCGGGCT              TCGACGC GGT GTGTTGA              TTGAGTGACAAAAGT  47 306
JRI60_RS16245 3928520 .. 3928539 +    -7  -3.14693   CACCGTGCACAGCGC            CGGGGCGG GCAG CGGCTCCG             TCTCTTCCTCGTAGA  51 450
JRI60_RS16280 3938078 .. 3938094 +  -7.9  -3.39327   TCGCGGCTCACAGCT              CGTCGAG GAA CTCGTCG              TTGTACGTGTAGCGG  59 46
JRI60_RS16320 3951729 .. 3951743 +  -2.7  -2.70932   TTGAGCATGTCCACG               CCGCC GTCCG GGAGG               TACTTCGCCGCGAGC  39 269
JRI60_RS16330 NONE
JRI60_RS16335 3955582 .. 3955628 +  -8.7  -3.24902   GCGAGGCGGGGGCCT CGGGCT-CGTGCT-GCAGCCGCT CGC GGCGCTTGCGGGCACGCAGCCAG TTGATGCTGCTGTTC  56 361
JRI60_RS16355 3960525 .. 3960568 +  -7.5  -3.02144   CTCCTTCGTGTCCAG CGTGA-GCTGGCCGTTGGCCTG GCT CAGGTC--CGGCTGGCCTCGCG TCTTCGGCAGGGTGA  52 424
JRI60_RS16440 3978009 .. 3978019 +  -2.4  -3.32647   TGTTCTGGAAGTCCC                 GCTG CAG CTGC                 TTCGTGTCCTTCGAG  45 478
JRI60_RS16455 3982000 .. 3982014 +  -4.3  -3.53811   TTCGTGGAGGAGTGG               GATGA ACGAG TCATC               TTTGCGGGAACTGGG  52 67
JRI60_RS16460 NONE
JRI60_RS16465 3983909 .. 3983923 +  -4.9  -3.31144   ATGCTGGACTGGCCC               GCGTC CACCA GGCGC               TTCTCCACGTCCGAG  49 88
JRI60_RS16475 3986586 .. 3986620 +  -7.2  -3.29325   CACCGCCCGTGTCAC    CGGCTCAGATGCCGGA GACGA TCCGCCA-CTG-GCCG    TCTTCCTTCTGGAAG  54 46
JRI60_RS16490 NONE
JRI60_RS16495 3990532 .. 3990546 +  -4.2  -3.75024   TTCCAATCGTGAGGT               CACGAT GCA ATCGGG               TTATTCGTGGTGGGA  54 130
JRI60_RS16500 3992501 .. 3992542 + -25.3  -4.49937   ATGAACTGAGCAGCC CCGAGGGGCCTTTCCGGGA GGAG TCTCGGGAAGGTCCCTCGG  TTTTCATCTTCTTGG 100 32
JRI60_RS16505 3994320 .. 3994347 +  -4.7  -3.53012   TGGGCCCGAGGAAGA        CCGCTTCGCGC TGAGAT GGGCGGGGTGG         TTTCACGCGGACGCG  52 12
JRI60_RS16510 3996120 .. 3996151 + -22.4  -2.53876   TCCCGTGAAGCCACG      CCTCTCCCCCGAGCC CCG GGC-CGGGGGAGAGG      TGGATTCCGGTCGGG 100 33
JRI60_RS16515 NONE
JRI60_RS16520 3998253 .. 3998266 +  -5.9  -3.03338   AGCAGCCGCTGATGG               CGCGG GTCA CCGTG                TCTTCCACCCCTTGT  49 101
JRI60_RS16525 3998944 .. 3998980 +    -2  -2.62263   GTCCCGCTAGAAGCT    GATAGGGGAGGGGCGC ATGAC GAGCCCCCTTCCGAGC    TCCTCTCGCGCCGCT  38 31
JRI60_RS16530 4000078 .. 4000100 +  -2.7  -3.28924   GGCGAGGGGCAGGGT          GGTGT-GACG CCGC CGTCTACGTC           TTGTCGCGGGAGATG  46 19
JRI60_RS16560 NONE
JRI60_RS16565 NONE
        gltC 4008323 .. 4008352 + -21.5  -2.89797   GCACCGTCCTCCACC       GGGGGCTGGATCC ACTC GGATCCGGCCCCC        TCGTCTTTCTACAAA 100 85
        plsX NONE
JRI60_RS16580 NONE
JRI60_RS16585 NONE
JRI60_RS16590 4012147 .. 4012199 + -17.9  -2.69799   GGTCATCCGGTAGGC CGC--CGGCAGATTCTCGAGCAGCC GCCGG GGCTGCCCGAGAATCTGCCGAAGCA TGATCTGTCCCATGG  79 263
JRI60_RS16615 NONE
JRI60_RS16620 NONE
JRI60_RS16625 4019188 .. 4019199 +  -3.6  -3.29263   CCTTCGGAAGAAGGA                GGCG CCTG CGTC                 TTCTCCAGAGCCTGT  47 81
JRI60_RS16630 NONE
JRI60_RS16635 4020469 .. 4020483 +  -4.2  -3.53444   TGCACCCAGGGAAGG               CCCTCT CAC AGATGG               TTTGCGCGGCCGTCG  51 512
        pcnB 4023549 .. 4023569 + -16.9  -3.90291   ACCCTCACCCCCGTC            CCCTCTCCC GGT GGGAGAGGG            TTTAGTTGGGACGCT  95 105
JRI60_RS16660 4025331 .. 4025348 +  -6.2  -3.59979   CGAGCACCTCGAGGA             GCTCCC GGGGCA GGGGGC              TTTCCACTCGCACCC  59 118
JRI60_RS16675 4029537 .. 4029557 + -13.9  -3.61398   CCGGGGCCGTTCCAC            CCCGTGCGG CGA CCGCTCGGG            TTGTTGGGACGACCG  78 160
JRI60_RS16680 NONE
JRI60_RS16685 4031306 .. 4031332 +  -7.2  -2.72344   GCGCATTGTCCGGCA         TGGTTCCCACGG TTA CTGTTGGCACCA         TGCTTCAAGGTCCCG  48 82
        rseP NONE
JRI60_RS16695 4033438 .. 4033457 +  -3.4  -3.14051   CCCCTTCGGCCCGCT            GGCGGGGT AGAA GCCTCGCA             TGTTCCTCGCGCTCG  44 16
        tsaB 4034353 .. 4034367 +  -3.4  -3.47227   ACCGCGGTGAAGATC               TGCGAG ATG CCCGCG               TTCTGCTGGTTCACC  50 187
JRI60_RS16715 4038113 .. 4038140 +  -9.8  -2.72344   CAAGGCCTCCGGGAC        GCCCCTGCCC ATTTGACC GGGGAGGGGC         TCCTTCCCCCTCGGA  57 49
JRI60_RS16720 NONE
JRI60_RS16725 NONE
JRI60_RS16730 NONE
JRI60_RS16735 4042459 .. 4042486 +  -5.6  -3.30124   CTCGCGGGCCGCCTG        GATGGCGCGGG CGTTGGA CTCG-GCCATC        TTCTCGGGCGTGGGC  51 183
JRI60_RS16755 4045376 .. 4045393 +  -3.3  -2.52795   GAACGTACCATTCCT             GGCG-CGG AGC CCATCGCC             TACGTTGCGAGCCTT  39 83
JRI60_RS16760 4046463 .. 4046482 +  -6.4  -3.55122   AGCGCTCGGCCAGGA            GCTGCT-CG GCC CGCGGCAGC            TTGGTTTCACTGATG  56 522
JRI60_RS16830 NONE
JRI60_RS16845 4064957 .. 4064993 +  -8.1  -5.02323   TTTGGGAGAGGGTCG  GGGTGAGGGAAGTCGCTC CCGT GAGCG-C--CCCTCGCCC   TTTTCTTTGTCCTCG  88 124
JRI60_RS16865 4068580 .. 4068600 +  -3.3  -4.21607   GGTAATTGCGGGTAA           GCTCTGGA AGAAGC TCCAG-GC            TTTCTCTTCGCTCGA  63 124
JRI60_RS16870 4070965 .. 4070975 +  -2.4  -3.22491   GCCGTTGGAATTCCT                 GGGG ATT CGCC                 TTCCTCATCGCGTTT  44 118
JRI60_RS16875 4071859 .. 4071905 + -17.2  -2.73875   AGGGGAGGATGATGC CGCCGGGGCTGCGGCGCTCGG CGGTCT CCG-GCGCCGCGGCCTGGGCC TGCTGTTCGGCCCGG  80 55
JRI60_RS16890 NONE
JRI60_RS16910 NONE
JRI60_RS16915 4081395 .. 4081405 +  -2.4  -3.14132   CGGCTGGTGACCGAG                 GGAC GAA GACC                 TTGATGGCAGCCAAC  42 11
JRI60_RS16920 NONE
JRI60_RS16925 4085121 .. 4085142 +  -2.9  -3.30124   GGACCGGCGCACGGA           GGGTCGG TTGCCGCT CAGACCC            TTCTGACAGGTGAGG  46 69
JRI60_RS16930 4086705 .. 4086742 + -25.7  -4.07885   GTAGTGAGTTCCAAT   GAGAAGGGCCCCGTGCG GAAT CGCGCGGGGCCCTTTTC    TTTTACGAGCAGGTA 100 108
JRI60_RS16950 4092936 .. 4092961 +  -8.2  -3.14132   GCGCGACGAGGCGCA         CCACGGAGCCC GGCTG GGGC-CCGGGG         TTCGTGCCGCCACCC  56 463
JRI60_RS16965 4096580 .. 4096602 +  -4.8  -3.95022   CAAATTATCGCTTTC           GTGGGAATGC CCG GCATTCGGAC           TTTGGTGTTGCTGAA  61 346
JRI60_RS16975 4097332 .. 4097344 +  -4.7  -3.86346   TACGCGGACTAGCAG                GGGCC GCG GGACC                TTTGTCCCGAGCTCA  58 29
JRI60_RS16985 NONE
JRI60_RS16990 4101962 .. 4101972 +  -6.8  -3.27525   GTGCGCGCGTTCTTC                 CGCA CGC TGCG                 TTAGCTTTGGGAGCC  54 11
JRI60_RS16995 4103392 .. 4103403 +  -4.4  -3.35996   TTTCTGGGTTGCTCA                GCAT GCCA ATGC                 TTCTGGCTGCACATC  51 308
JRI60_RS17000 NONE
JRI60_RS17020 NONE
JRI60_RS17025 4111312 .. 4111349 +  -2.5  -3.86346   TCGACAATGCTCCAG   CTCGCGCCTTTGGCCCT GCCA ACGTCCGGATGGGCGAG    TTTCTGGAACGCTGG  54 494
JRI60_RS17045 4114643 .. 4114656 +  -4.5   -3.9461   AAGGGCTCGCGCTGC               CAGTC CTCG GGCTG                TTGTTCTTGGCCGCC  61 167
JRI60_RS17055 NONE
JRI60_RS17060 4116281 .. 4116293 +  -5.5  -2.57013   TCGCGCAGCTGGCGT                GAGGT GCC GCCTC                TCAGTTGCGTTGGCG  43 153
JRI60_RS17070 NONE
JRI60_RS17075 NONE
JRI60_RS17080 4118961 .. 4118981 +  -8.9  -3.40403   CTTCGCCGGCCCGCT            CCGCGAGCG CCT CGCTTGAGG            TTATCATGCCAGCGG  58 518
JRI60_RS17105 NONE
JRI60_RS17110 4127708 .. 4127747 + -20.9  -3.87815   AGTAGGTTCACACCT  CACGA-GGCCCCTTCCGT TGCAC ACGGGAGGGGCCGTCGTG  TTTCTGGCGGTGCCC 100 36
JRI60_RS17130 4134689 .. 4134704 +  -2.6  -3.48766   ACCCCGGGTCTCAAC              TGGTAGT CGA AC-ACCA              TCTTTCCGTTCTCCA  48 276
JRI60_RS17155 4140729 .. 4140766 +   -20  -2.70932   CCGCTGGATGCATCC   CGAGGGGCGGTCCTCCT TATAT AGGAGG-CCGCCCTTCG   TGCTTGCGGGGCCGC  95 54
JRI60_RS17165 4144399 .. 4144420 +  -8.7  -3.21099   GATGGACAGGCCCAG           GCCGGTG CCCACGCC CACCGGC            TTGGTGGTGAAGAAG  56 185
JRI60_RS17185 NONE
JRI60_RS17190 4151106 .. 4151129 +  -3.7  -3.05384   CCCCGGAACGCCGTG          CGGGCGCAC ACGGCC GTGCCCACG           TTGGCTCGCGCGAGC  43 326
JRI60_RS17200 NONE
JRI60_RS17220 4161160 .. 4161185 + -11.2  -3.40403   TGCTGTTGAATCGCT         GGAGCATGGCC TGCAT GGCCA-GCTCC         TTCTGCTGAGCCGGC  64 157
JRI60_RS17240 4163333 .. 4163353 +  -3.1   -4.4009   CTGCCGTGCAGGTGG            CGGTGGCTC CAG GAGCACTCG            TTTTCTCGCGTGGCC  66 249
JRI60_RS17245 NONE
JRI60_RS17250 4165810 .. 4165839 + -11.3  -3.25088   AGGACGTGAGGCTTG       CTCGGCCGGGGGG ACCC CCCTCTGGCCCGG        TTCGTCGCTTTCCGG  66 40
JRI60_RS17255 4166421 .. 4166440 +  -4.2  -2.78596   CAGTTGCGCCTGTTC            TGAGGCCT CCAG GGGCGTCA             TATACTCGCGCCCTC  41 23
JRI60_RS17260 NONE
JRI60_RS17265 4168980 .. 4168990 +  -2.4  -3.16191   GGTCCTTGAACATCG                 ACCC CAG GGGC                 TTGATGACCGTCTGG  44 205
JRI60_RS17290 NONE
        truA NONE
JRI60_RS17300 4175854 .. 4175868 +  -3.5  -3.58854   TCGAGCCGGGCGAAC               GGGTT GTTGA AGCCC               TTGTCCTTCTGCTTC  53 357
JRI60_RS17315 4179506 .. 4179521 +  -6.1   -3.0263   CGTTCGTCCGCTACG              GCGGA CATGGT TCCGC               TATTGGAGACGTCAT  49 100
JRI60_RS17320 4180439 .. 4180485 + -20.4  -3.55071   CGCGTCCGCTGGAGA CACGAAGAGCCGGCG-G-GTGCC TTGG GGCACTCTCGCCGGCTCT-CGTG TTTCCGGCCCTCTAC 100 49
JRI60_RS17325 4181047 .. 4181060 +  -2.3  -4.26903   GGAGCGCCCTCGGAC               AACGC GGTG GCGTC                TTTTCCTCCGGTGAA  62 114
JRI60_RS17330 4181920 .. 4181977 +  -4.5  -2.87931   GCTGCGGGTGCTGAA GCGATGAGTGCCCGTTGCCCGCGCTGCG GTA CGCCG-GTGGACGGCGGGCGCCTGGCGG TGTGTCCCGGCTGCC  44 19
JRI60_RS17335 4183787 .. 4183806 +  -4.3  -3.98214   ACGCCGTACCCATGA            GC-CTGGA CTGGT TCCAGGGC            TTTCTCGTGGGTGCT  61 444
JRI60_RS17340 NONE
JRI60_RS17345 4185686 .. 4185698 +  -4.7  -2.91264   CGACGCCTGAGCCGA                GGGGC ATC GCCGC                TCTGTGGCTCGCCAC  44 31
JRI60_RS17350 NONE
JRI60_RS17355 4187332 .. 4187362 +  -5.3  -3.70751   GGACGTCCAGTTGGC       CGACACCTCGATG TAGCC CTTGGAGGAGTCG       TTGTTGGCGTTGTTG  57 489
JRI60_RS17375 4195395 .. 4195419 +  -5.7  -2.52676   CACCGGGCGAGACGG          GATGTGATTGG CTA CCGGTCACATG          TCCCTTCCGCGCGTC  44 119
JRI60_RS17380 NONE
JRI60_RS17385 NONE
JRI60_RS17390 4200554 .. 4200564 +  -2.4  -3.51924   ATAGCGGTACCCGCC                 TGGC GAA GCCC                 TTGTCTGAATACGCC  48 95
JRI60_RS17395 4202566 .. 4202590 +    -7  -3.04144   AGCTCGATGGCGGCC          GCGCGCACGA AGCCC TCCAGCGCGC          TGTTCACCATCGAGG  49 228
JRI60_RS17405 4204137 .. 4204174 +   -12   -3.6806   ATGGCTGGTTTGGCG   GCGAGGGCCGGTGTCTC ATCGC GAG-CTCCGGCCTTTGC   TTTCAATGACTGTCT  75 154
JRI60_RS17425 NONE
JRI60_RS17430 NONE
JRI60_RS17435 NONE
JRI60_RS17440 4209584 .. 4209594 +  -3.2   -3.0497   TTCATCCTGAAAGTG                 TGGT GAA GCCA                 TGTTCACGGTCGTCT  42 20
JRI60_RS17445 4210672 .. 4210691 +  -9.2  -2.62616   CGACCATGGCCTCTG            CCTCACCG CTTC CGGCGAGG             TGCTCTGGGCCCTGG  54 105
JRI60_RS17450 4212946 .. 4212958 +  -5.5  -3.37796   CGCCCTCTGGTGGAA                GGACG CGT CGTTC                TTGTACGTGGTGGAG  51 184
JRI60_RS17465 4217589 .. 4217613 +  -7.7  -3.06796   TCTTCAGCGCCGCCC          GCCAACCGGCG ACC CGCTGCTCGGC          TTCGATCCAGTCCGC  52 437
JRI60_RS17475 NONE
        araA NONE
JRI60_RS17485 NONE
JRI60_RS17490 NONE
JRI60_RS17495 NONE
        yjfF NONE
JRI60_RS17505 4227362 .. 4227375 +  -5.9  -3.77832   TGTCCGGGCGAGTTG               CCGGG CTGC CCTGG                TTGTTGCCTTTACCG  62 188
JRI60_RS17560 NONE
JRI60_RS17565 4239179 .. 4239189 +  -2.4   -4.2528   TTCCGGTACAGGCTC                 AGCC AAT GGCC                 TTTGTTGAATTCGAG  64 279
JRI60_RS17585 NONE
JRI60_RS17590 4243768 .. 4243811 +  -3.7  -3.29511   CAGCCGTCCACGAGG GGGAC-CCGCGCGGCGCTCGGC CTT GCTG-GCCCCG-GCAGCGGCCC TTCTCGGCCCCTCCG  47 137
JRI60_RS17595 4247159 .. 4247177 +  -8.8  -3.03771   GGCGGAGCAGCACGC             CACTGCCG CAG CGACAGTG             TCTTCGAGCGTGTCG  55 513
JRI60_RS17605 NONE
JRI60_RS17610 4249435 .. 4249460 +    -9  -3.28712   GCTTGCGGATGGACT         CGCCCATCAGC TTGAT GC-GGTGGGCG         TTGTGGACCACCCGG  58 275
JRI60_RS17625 NONE
JRI60_RS17660 4263390 .. 4263415 +  -7.5  -2.53015   ACGTCACGAAGCTGT         GCCGGTACTCT CCAA AGCGTACCAGC          TCGATTCCCAACTCT  48 242
JRI60_RS17675 4266805 .. 4266823 +  -5.9  -3.18264   CCGATCCGGGAGCCC             GCGGAAC TGCCC GTCCCGC             TTGATGCCTCGGAGG  51 301
JRI60_RS17690 NONE
JRI60_RS17695 4270360 .. 4270390 + -24.1  -3.50853   AACGGGGAGAGCAAG       GGACCGGCCAGGG AGAGA CCCTGGCCGGTCC       TTCTCGTTCGAGAAC 100 54
JRI60_RS17705 4272891 .. 4272905 + -11.4  -3.34517   GTCCCTTGACACCTT               CCCTGG TGG CCAGGG               TGTTTCCGGACCGGT  68 466
JRI60_RS17720 4274464 .. 4274480 +  -2.1  -2.59475   ACTTGCCGTGCGGAG              GAGGCTG GGA TGGCCGC              GTTGGTATCTGGATG  38 66
JRI60_RS17730 4275207 .. 4275223 +  -2.1  -3.90241   GCGAGGCCTCCATGG              GCTCCGC GTA GCAGACC              TTCTTGTCCTTGCTC  57 138
JRI60_RS17740 4281717 .. 4281727 +  -8.2  -4.08767   GCCAGCACCTCCATC                 CCCC CAG GGGG                 TTTTGAACCCATCAG  72 75
JRI60_RS17745 4282545 .. 4282561 +  -3.5   -4.3898   CACCTGCTCGTCGTA              CCCCAGG CCT CCCGGGA              TTTTGTAGACCTCGT  69 296
JRI60_RS17775 4289153 .. 4289179 +  -2.9   -3.3062   ACACGGCGGCCCTTA        CGCA-TGGGTGC GCTG GCCCTCGCTGCG         TTGATGCTATTTACA  46 490
JRI60_RS17780 NONE
JRI60_RS17785 4291111 .. 4291122 +  -7.2  -3.13403   TGTCCTCGGTCTCGA                CCGG AGTC CCGG                 TGTTGCTGCCCGCGA  52 113
JRI60_RS17835 4305591 .. 4305627 +  -6.4  -2.95789   GAGGACACGGTCGAG   CTGGGGCTGGT-GCCGC TGAT GCAGCCACCCGCCACGG    TGTCATTGCTGTCGT  49 116
JRI60_RS17845 4310075 .. 4310117 +  -5.2  -3.41602   GCCCCCCGTGGGCTA CGGGGAGTCGGCCCGCTCCC CCT GAGGGCGAGCAGGCACCGTG TTCTCCTCACATACG  53 1
JRI60_RS17850 4311335 .. 4311345 +  -8.2  -2.83715   CAATGCCAGACGCGC                 CGGG GTG CCCG                 TGTCGTCGTAGTACG  51 194
JRI60_RS17875 4319807 .. 4319817 +  -8.2  -3.39482   GCATCGCGGCGTAGG                 GCCC CGG GGGC                 TTCTCAGTCCTCTTC  60 27
JRI60_RS17895 4322082 .. 4322104 +  -5.5  -2.62184   CGCGCGAGCACCGGC          GG-TGAGCGG GCCT CCGCGCATCC           TGCTCTGCGCCGGCC  44 21
JRI60_RS17900 4322858 .. 4322880 + -15.6  -3.14132   TATACCCTCACCCCG           TCCCTCTCCC AGA GGGAGAGGGG           TTGATGAACAGCGGG  78 60
JRI60_RS17950 NONE
JRI60_RS17955 NONE
         hpt 4331540 .. 4331569 + -10.7   -3.7941   ACGCCTCAGCTCCGG       GGGCG-CGCGGAGG TCT TCTTCGCGGCGCTC       TTCTTCTCCGCCGTC  77 57
JRI60_RS17975 NONE
        dapF NONE
JRI60_RS17985 NONE
JRI60_RS17990 4342466 .. 4342479 +  -2.3  -3.28712   AGAGGTTGAGGAGGA               GCTGC GTCG GCATC                TTCTGCACCGCGGAA  45 419
JRI60_RS18010 NONE
JRI60_RS18015 4348159 .. 4348173 +  -5.6  -3.05384   CCGCCCCTTCGTCCT               CGCCGA CAA TCCGCG               TTAGCTACGACGAGC  47 7
JRI60_RS18020 4348544 .. 4348560 +  -2.9  -3.27022   CTCGCCCAACCCCGC              CGTCC CTCATGC GGGCG              TTCATGTCGCCTCCC  46 113
JRI60_RS18025 NONE
JRI60_RS18030 4351655 .. 4351702 + -11.2  -3.20307   TGCCGCCGGAGAGCT CGAACTTCATCGCGGTCGCGCC GCTC GGCGTGACGAAGGTGTAGTTCG TGTTGCTGCTCTTGG  62 366
JRI60_RS18055 4361508 .. 4361525 +  -6.2  -3.14931   ACACGCCTGCAGTAC             CGGGCC GGACGA GGCCTG              TTCATGAGCGCTCCA  51 1
JRI60_RS18060 4363820 .. 4363838 +  -5.8  -2.80816   TTGATGGACAGGATG             GCCGGCTC ATG GCGCAGGC             TCTCCTCGATGGCGC  44 385
JRI60_RS18070 NONE
JRI60_RS18075 4367593 .. 4367608 +  -3.9  -3.03771   GGCCTTCGACACCAT              GCCGG AGTGAG TCGGC               TGTTCGAGGCTCTGG  44 16
JRI60_RS18080 4369362 .. 4369394 + -11.1  -3.09516   GACGGCGTGGGAAGC      AACGGGCCCGCTCCT GGG GGGAGCGGGCCCACC      TTCACTCGTCACCGC  64 44
JRI60_RS18090 4374692 .. 4374717 + -11.1  -2.90723   AGCAGCTCCGTGAGT         TTCCGGAGGGG CTCA TCCCTCCGGAC          TGTCGTTGCGCCTGC  61 257
JRI60_RS18100 4378532 .. 4378550 +  -7.3  -2.70932   GTCCACTTCGCGGAA             GAGCCGG GCGCG CCGGCCC             TCCTTCACGCAGGCG  49 215
JRI60_RS18110 4380234 .. 4380264 +  -5.3  -3.30124   GACGTAGCGCGCGCT      CGGC-TGGAGCCGG TATC CCGGCTCGGTGCCC       TTCTCCACGGTGAAC  51 179
JRI60_RS18120 NONE
JRI60_RS18125 4382496 .. 4382515 +  -4.2  -3.08996   CGTCCACCTGCCGGC            GGCCGAGCT GAT AGCG-GGCC            TGTTCGCTGGGGATG  45 386
JRI60_RS18145 4387603 .. 4387630 +  -9.8  -2.78384   GGGTTCTCGCCCGCC        GC-GGGCTGCTCG CTG CCAGCGGCCCCGC        TCTGCTCGGACGCCG  54 187
JRI60_RS18155 4389779 .. 4389801 + -11.9  -2.62184   GGCCGCGGTGTAGGA           GCCCCACCC GCTGG GGGCGGGGC           TCCTATCGGCCCGGA  61 28
JRI60_RS18165 NONE
JRI60_RS18170 NONE
         mvk NONE
        mvaD NONE
JRI60_RS18185 4396599 .. 4396623 +  -2.2  -2.78463   GCGCGGCTGCGCTCG         TGGCTCGAC GCCTGGAA GT-GAGCCA          TCTCATGAGGAAGGT  38 5
JRI60_RS18190 4397505 .. 4397541 + -14.3  -2.53263   GGTTCTAGAGACCCT    CACCCCGTCCCTCTCCC AGA GGGAGAGGGGAGGGGGC    TCGGTTACGGCTCCA  68 33
JRI60_RS18215 NONE
JRI60_RS18220 4407514 .. 4407532 +  -9.5  -3.68222   GAATGCCTTCGGCTT             GCTCGCG GGTGG CGCGGGC             TTCTTCGGCTTCACC  67 433
JRI60_RS18290 NONE
JRI60_RS18295 NONE
JRI60_RS18300 4424307 .. 4424317 +  -2.4  -4.21194   CCCACGAAGAAACAT                 GGTG ACA CTCC                 TTTTCGCTGGTGAGG  62 359
JRI60_RS18310 NONE
JRI60_RS18315 NONE
JRI60_RS18320 4427725 .. 4427753 +  -3.6  -3.16564   CGCCGCTCAGATAGA        CGCCCGTCGCGC CGGCT GCGAGGAAGGCG        TTGATGCGCTGGCGA  45 373
JRI60_RS18340 NONE
JRI60_RS18345 4434502 .. 4434512 +  -8.2  -3.51708   TGAGCGCGGTCCCCT                 CCCG CGG CGGG                 TTCGTTTCCACCCTC  62 38
JRI60_RS18350 4436192 .. 4436206 +  -2.1  -3.01712   CGCGCAGCTCCGTGT               TCGAG AACGC CTTGA               TGTTGCCCGCGAACC  41 292
JRI60_RS18360 NONE
JRI60_RS18365 4439965 .. 4439988 + -18.2  -3.67597   GCGGAAAAAGAAAAA          GGCCCCGACT TTTC AGTCGGGGCC           TTCTTCAGTGCCCAG  93 42
JRI60_RS18405 4447899 .. 4447927 +  -4.6  -3.01712   TGGAATGCAGGAGCG       CTACGAGGC-CCTC TGC GAGGTGGC-CGTAG       TATTGGCACACGCGC  45 374
        mgtE NONE
JRI60_RS18425 4453679 .. 4453700 + -10.9  -2.71364   CTCCACCCTGGGCAT           CGCT-GGCTC GGT GAGCCGAGCG           TGCTTCGGGAGCTCC  57 415
JRI60_RS18445 NONE
JRI60_RS18450 NONE
JRI60_RS18455 4458825 .. 4458842 +  -3.3  -2.79133   GAGGGGGGAGGCGCT             TCTTCGG CCCA CCGCGGA              TATGCTCCCCCCTTC  40 39
JRI60_RS18460 4461086 .. 4461100 +    -7  -3.21099   CTGAGGAGCCGGCAC               CCGCCC CCT GGGCCG               TTCCTCGTCCGAGGC  52 37
JRI60_RS18465 4462766 .. 4462788 +  -5.5  -3.42621   CGACGTCTCCTGGCG          TCGCCTC-CG AGCG CGCGGGGCGG           TTCTCCGTTAGGGTT  53 58
JRI60_RS18470 NONE
JRI60_RS18475 NONE
JRI60_RS18480 4466882 .. 4466892 +  -2.4  -3.36452   TGTGGGCGACGCTGA                 GCTC GGA GTGC                 TTCGTGTTCACCCGT  45 290
JRI60_RS18510 4474252 .. 4474299 + -24.2   -4.7254   GGCCCGCGGGATTCT ACATGGCCCGCTTCTTGGCGCC GGGG GGCTCCAGGAGGCGGGCCATGG TTTTTCGTGGCGAGT 100 261
JRI60_RS18525 NONE
JRI60_RS18550 4482942 .. 4482958 +  -4.3  -2.61264   GGTCGCTAGGATGAG              GGAGCGG GCA TCGCTAC              GTTCTCCATCCACCC  42 109
        rtcA NONE
JRI60_RS18560 4485457 .. 4485473 +  -3.6  -4.10161   TCCGCACTCCGCCGC              GCCAGC CAGGA GCTGTC              TTTTCCCAGCTACTA  61 221
JRI60_RS18570 NONE
JRI60_RS18575 4488756 .. 4488770 +    -7  -3.31461   GGGCACATCGACAGG               CGGGCG GCC CGCGCG               TTATAGGGCTGGCTG  54 52
        ruvC NONE
        ruvA 4490014 .. 4490035 +  -8.7  -3.14132   CCTGACACCCCGCCG           GGAGCTAGC GGTT GCTACCTCC            TTCCTCGCCCACCGC  56 36
JRI60_RS18595 4491553 .. 4491578 +  -8.1  -3.36803   CGCGGCGCTGGGCCT         CGCGGCGCATG TTCA CGAGCGCCGGG          TTCTCCATCAACTTC  55 375
JRI60_RS18605 NONE
JRI60_RS18610 NONE
JRI60_RS18615 NONE
JRI60_RS18620 NONE
JRI60_RS18625 4498258 .. 4498280 +  -3.2  -2.52795   CGCCTCGCCCTCAAG           ACACGGTAGG ACG CCATCCGTGA           TGGATTCGGCGGATT  39 17
JRI60_RS18630 4498756 .. 4498766 +  -2.4  -3.28712   AGCCATCGCCGAGCT                 GGCC TTG GGCG                 TTGTAGCCCCAACCC  45 106
        ruvB NONE
JRI60_RS18660 4505983 .. 4505997 +  -9.2  -3.07443   GCCCGCGCGGGACTC               CCTCCC GGA GGGGGG               TTCAATGGCGTGTGG  57 309
JRI60_RS18665 NONE
JRI60_RS18670 NONE
JRI60_RS18675 NONE
        pyrF 4510209 .. 4510222 +  -2.4  -2.61199   ACACCCCGTCTCCAG               CTTG TTTCCC CAAG                GTTGGTTGAAGGTTG  38 82
JRI60_RS18685 4511254 .. 4511282 + -10.9  -2.70932   CGTCATTCACCGTCG        CGTCGTGGTCACC GAA GGCGCCCACGATG        TAGTTGCCCAGGGCG  57 416
JRI60_RS18695 NONE
JRI60_RS18700 4514856 .. 4514875 +  -6.4  -3.18199   GGACTCCACGCCTGA            TGACTCTC GGCT GCGAGTCA             TTGCATTCCGAGTTC  51 508
JRI60_RS18730 NONE
JRI60_RS18735 4521526 .. 4521559 + -14.5  -3.90048   CTCGGGGGTTGTCTT     C-CGGGCGGCAGGGGG TCT CCTCTCGCCGCCCGCG     TCTTTTTCAAGGGGA  88 61
JRI60_RS18740 NONE
JRI60_RS18745 4523567 .. 4523582 +  -5.4  -2.90901   TTGACCACGAAGTAC              TCGGCCC ACT GGG-CGA              TGTGGTTGGAGGTGT  46 447
        serC NONE
JRI60_RS18780 4531790 .. 4531814 +  -5.6  -3.05963   GGGTTGCAGGGAGCG          GGGCGCCG AGTAGGGTG CGGCCCCC          TCTTCCACTCGACAT  47 186
JRI60_RS18785 4534224 .. 4534242 +  -4.4  -3.05384   TGCAAGGCTTCAGGT             GAGTCCGG CGC CGGGACGC             TTCCATCGACGAGGA  45 313
JRI60_RS18800 4540576 .. 4540593 + -11.3  -2.57132   CTGGGTGCGCAGCTC             CTGGAGC ACCA GCTCCAG              CTTGTCCACCAGCCG  56 376
JRI60_RS18845 NONE
JRI60_RS18850 4552261 .. 4552273 +  -4.7  -4.08767   CCATCGTCTCCGCGA                CGAGC CAC GCACG                TTTTGCCGCCGTGCC  62 282
JRI60_RS18855 4554046 .. 4554080 +  -5.7  -3.14132   GATTTCCTTGTAGAA    GCACAGACGCGCCATGC AGT GC-TGGCGC-TCAATGC    TTCCTCCGGGAAGCA  49 235
JRI60_RS18860 4554992 .. 4555017 +  -7.5  -3.16154   CCCTCGAAAGGGGCG         CTCGGCATCGG GTAG CCGATGATGGG          TTGGGTGTCGTCTTG  54 240
JRI60_RS18870 4557204 .. 4557246 +   -17  -2.62616   GTAGGCGGAAATGAA ACGGCCCACTCCCGCCGCG AAGCTG CTCGG-GGGAGTGGGCCGC TGATGTCGAGACTGC  80 37
JRI60_RS18900 4565472 .. 4565506 +  -9.1  -3.81447   TGTGAATCCCGGTGT    GCCGCCGGGCTCAGCG CTTG CGC-GTCCCCGCCGGC     TTCTTCTCCGGTCTG  71 68
         smc 4570145 .. 4570174 + -16.4  -3.27298   CCCTCGAGAACAAAA       GGCGCGGAACCC ATGTCC GGGTCCCGCGCC        TTCGTCATTCCAGGC  82 98
JRI60_RS18950 NONE
JRI60_RS18955 4579204 .. 4579214 +  -4.6  -3.20901   TCCTGAACGCGGCGC                 CCGG GCA TCGG                 TTACCTTCCTGGCAT  47 35
JRI60_RS18960 4579800 .. 4579829 +  -2.7  -3.95324   TTCACCCGGCCGGTG       GCCACCTCGCGC AGGGAGA GCACG-GGCGGC       TTGTTCTTGGACGTG  57 116
JRI60_RS18970 4581986 .. 4582005 +  -7.8  -2.71144   TGGCGTTCCTCCACG            TCCGCTGG TCCT TCAGCGGG             TACTTGAACGCGATG  49 468
        feaR 4584431 .. 4584472 +  -3.8  -2.52464   CGCGAGCGGGCCCTC CTCTCCGTGCGTTGATGCCCG CCC CGGGTGTC--CGTGC-GAGAG TGCATTCCCAGGGAG  40 11
JRI60_RS18990 4585703 .. 4585713 +  -4.6  -3.85817   TCGGAGCGCGGGGCC                 GGGG GCT CTCC                 TTTCTAGCGGCGGAT  58 57
JRI60_RS18995 NONE
JRI60_RS19025 NONE
JRI60_RS19030 4593946 .. 4593999 +  -7.4  -3.14132   CACGCCCTGCATGAG GTCCTCGAGCTTCAGGGG-CAGTGC GTCGA GCACGGACTTCTCCAGCTCGAGCAC TTCCTCGGCCGAGCC  54 74
JRI60_RS19055 4600041 .. 4600051 +  -6.8  -2.86343   AGGAGAGGAAGACTT                 CCCA GAC TGGG                 TCTCATGCTTACCCT  50 94
JRI60_RS19060 4602865 .. 4602875 +  -8.2    -3.214   CAGCAACTCCATCTC                 GCGC GCC GCGC                 TCTTCGTGTCCTCCG  56 254
JRI60_RS19075 NONE
        gltE 4609828 .. 4609852 +  -3.6  -2.90212   GGGAACCGCTCGGAG         GCAGTCATGAG GAAG CTCCTGA-TGC          TGTGTGCGGTGCTGG  43 140
        cglF NONE
        gltG 4612151 .. 4612192 + -10.2  -4.60487   GCTGAGTGAAAAGGT TCAGG-TGGGCGGTTCCCGT TTCG ACGGG-GCCGCCCATCTTGC TTTTTGGCGCTGGTG  93 55
        cglE NONE
JRI60_RS19100 4614881 .. 4614921 + -21.2  -4.64861   ATTTGCGCGATTGCG GGGGGTGGTGAGCGGG-CT GTAG AGTCCCGCTCTCCGCCCCC  TTTCTTTTCGCGAGG 100 59
JRI60_RS19105 4627328 .. 4627347 +  -2.7  -3.91072   CCACCTCTACGATTC            CGGCGGG TTTTCT CCCGTCA             TTTCTGAGGGTTTGC  58 140
        gltJ 4629546 .. 4629567 + -10.9  -3.01712   GATGCGTCATGAGTT           CGTGTCGAC ATTG GTTGACACG            TCTTGAGCGCCGGGA  62 125
JRI60_RS19115 4630627 .. 4630668 +  -8.8   -4.2349   TGACGACCAGTGTTC T-TTGGGGCCCTATCCAGT TCTTC GCTGGGTAGGGCCCTACCA TTTTAGGTATGGCCG  76 72
JRI60_RS19120 4631329 .. 4631363 + -22.3   -4.3739   CTGCTCGGTGACTTC    CAGAGGGCCCTC-CCC AAGC GGGCGAGGGCCCTCTG     TTTTCTCGGAGCCTC 100 49
JRI60_RS19125 4632544 .. 4632554 +    -4  -3.29511   TACTTTGGATGAGGC                 CAAT CTA ATTG                 TTGTACCGGCGTACG  47 54
JRI60_RS19145 NONE
JRI60_RS19150 4646765 .. 4646822 + -18.4  -3.06796   CCGCGACGATCTGCT CGGCCTC-GCTGACGGGCGCGCGGACGTC GTT GGCG-CC-CGCGCCCACCAGCAGCGGCCG TTCGATCCGATCCAC  81 265
JRI60_RS19165 NONE
JRI60_RS19170 4654641 .. 4654657 +  -7.9  -3.61715   GATCGCGCAGCTGCT              GGGCCAG CTC CTGGCCG              TTGTTGGCGAAGATG  61 177
JRI60_RS19195 4665702 .. 4665739 +  -2.6  -2.57069   ATTCGCGCGCCGGGC   CTCTTGGAGTGCCGGGC AGGTG GCCGGGCGGTC-GGGAG   CGTTTATTTGATGAG  38 43
JRI60_RS19200 NONE
JRI60_RS19205 NONE
JRI60_RS19210 4669917 .. 4669965 + -12.4  -3.25823   CGCTCGTAACCCCGC GGT-GCC-GGGAAGGCACCGCGGG CCA CGCGCGGTGCCCTCTCAGTCGACC TTGCTCTGGGGCAGA  71 32
JRI60_RS19230 4682300 .. 4682329 +  -3.5  -3.14211   GAGCTGGGCATAGGC       CTGGAGCATCAGGC GGG GTGTGA-GCACCAG       TTGCTGCCGGAAGGT  45 404
JRI60_RS19240 4684976 .. 4684992 +  -5.1  -3.06915   CTTACCCACCCGTTG              TCGCG GCCTCTG CGCGA              TTAGCTCAGCTGGAT  47 163
JRI60_RS19245 4685064 .. 4685117 + -28.3  -4.07568   CTGCATCGCGCGCAA GTTGAAGGGCCTGGAATCCTCGGGG ACAT CCCCGATGGTTCCAGGCCCTTCGCC TTTTCCGGCCGGGCC 100 28
JRI60_RS19355 4714164 .. 4714180 +  -3.5  -3.59698   GCCTTGAACCAGGTG              GCCCCGC CTG GCCGCGC              TTGTGTCTCGCGTCG  51 34
JRI60_RS19360 4714594 .. 4714646 +   -25  -4.36914   TGCATCGCGCGCAAG TTGAAGGGCCTGGAATCCTCGGGG ACATC CCCCGATGGTTCCAGGCCCTTCGC TTTTCTCGGCGCCCC 100 29
JRI60_RS19375 NONE
JRI60_RS19380 4746058 .. 4746101 + -10.8   -2.8474   TCTCCGGGGGCACCC CAGCGGGGCGGGTGGCTCAG GCGG CGGAGCTGGCCGCCTTGCCG TACTTCTCGATGCGC  61 61
JRI60_RS19465 4761798 .. 4761826 +  -5.8  -3.14132   GTGGACAGGGGCAGG        GGCCCGTCCTCG GTGGA CGGGGGGTGGCC        TTCATCGCCCACCGC  49 76
JRI60_RS19495 4767053 .. 4767093 + -19.9  -3.55444   CTGGGGGCCCGGAAG CACG-GAGGCCGCCACCTC GTGAA GAGG-GGCGGCCTCTCGTG TTTCGAGCCTGGGCG 100 50
JRI60_RS19505 4770213 .. 4770239 + -15.9  -3.73068   GGCCCAAAGCACAAA        GGCCGC-CCCTC GTGG GAGGGAGCGGCC         TTCTTGCCTTCCAGC  85 58
        plsX 4771794 .. 4771829 +  -4.6  -3.01712   TTAGAGAGCGCGCGC    GAGGCGTTCGTGTCGGG AAC CCCCACAGGGA-GCCCC    TCTTGGCACGCACGC  45 37
JRI60_RS19520 NONE
        fabD NONE
        fabG 4774545 .. 4774571 +    -8  -3.55622   AGGGTTGGATCAGGG        T-CGGGCGTGG GATATA CCGCGCCCGCA         TTTACCCAGGTTCGG  60 44
        acpP 4774898 .. 4774913 + -10.4  -3.06183   GGTAGGGCCGGGGAG              CGCTGG TCCC CCAGCG               TTCCATGGCAGTAGC  60 49
        fabF NONE
        rpiB NONE
JRI60_RS19550 NONE
        nrdR 4778656 .. 4778666 +  -2.4  -3.01712   CAAGGATGGTTGACG                 GGCG ATG CGGC                 TCTTGACGCGAGCGC  41 28
        ribD 4780012 .. 4780030 + -14.6  -2.79183   GCCACGGTGTCTCCC             TCCGCCAC CGC GTGGCGGA             TGTCGTAGCGCTGCG  69 202
JRI60_RS19570 4781158 .. 4781183 +  -9.6  -3.87815   GGGACGCGGAAGTTG         CGCCGGGCGG CCGCTC CCGCCTGGAG          TTTCTGCCCCTGGGC  73 363
JRI60_RS19580 4782355 .. 4782372 +  -7.7  -3.13403   GGAGAGGGCGGGGGG             TGAGGGT CGTC ACCCTCG              TGTTCCTCGCCCGGC  54 79
JRI60_RS19585 4783799 .. 4783832 +  -4.5  -3.73068   CAGGAGTCCCAGTTC     GTCG-GGTTTTTCCGG TTG CTGGACGGACCTCGGC     TTGTTACCTTGCCCC  55 78
JRI60_RS19590 NONE
JRI60_RS19595 4785377 .. 4785387 +  -5.4  -3.79747   CGCTCGCCCTCGGCG                 TGAC GCT GTCA                 TTTCCTCGTGAATGA  60 23
JRI60_RS19605 4787049 .. 4787104 +  -7.4  -2.75481   TCCCCGACAGCCAGG CGCGGAACTCATCGGTCGTCGGCGGGC AGT GCAGGCAGTTGGC-GATGAGCTCCGTG TCCTTCAGGTTCGGC  49 98
JRI60_RS19640 4795072 .. 4795089 +  -6.2  -4.34263   CGACCCCGTCGGGCC             GCTCGG GGGCGA CCGGGC              TTTATCTTCTTCACG  73 49
JRI60_RS19645 4795906 .. 4795926 + -14.1  -3.25823   CGCGCTTCGGACGAA            CTGGTCTGA CTG TCAGACCAG            TTGCTCTCGAGCGCG  75 79
JRI60_RS19655 4797724 .. 4797739 +    -6  -3.33696   AGGCGGTCATCAAGG              CGGCCG GTTT CGGCGG               TTGATTCGAAGGAAA  53 6
        ribB 4798993 .. 4799009 +  -5.7  -2.62184   GGAAAACTCCCTGGC              GACGCCC ACC GGGTGGC              TGGTGTAGAGAGGAG  44 53
        ribE NONE
        nusB NONE
JRI60_RS19675 NONE
JRI60_RS19680 NONE
JRI60_RS19685 4803124 .. 4803160 +  -2.3  -2.87647   GGGAATGAGCCTGGA  GCGG-CGTCGGG-C-GTG ACGC CACCGGCCCGAGGACTGC   TATCCTCTGATCCGT  40 10
JRI60_RS19690 NONE
JRI60_RS19695 NONE
JRI60_RS19700 NONE
JRI60_RS19705 NONE
JRI60_RS19710 NONE
JRI60_RS19715 4809043 .. 4809060 +  -2.5  -3.14881   ACGGTGAGGCGGTGG             CCGTCAC TGTG GAGCCGG              TTGATGCCGGCGTTG  44 129
JRI60_RS19735 4812734 .. 4812783 +  -4.8  -3.16564   CGGGCGTGGCGGGCG GGGGCTCCGCGCGTACCGG-CGCG GGAG CGTGACCCGC-CGCGAGGAGCGTC TTCATGGAGTCGCGC  47 170
JRI60_RS19750 NONE
JRI60_RS19755 4816039 .. 4816074 +  -2.4  -3.01712   CGGGACGCAGGGGCG    GCAGGCGCGC-GAGG AAGAGGG CCTCGGCGCGCAGGA    TGTTGCCCACGCCCG  41 320
JRI60_RS19765 4817356 .. 4817409 +   -11  -3.09273   GACAAGAGCCTGTAA TCACC-G-CGCCCGAGCTGGGGGTG TGAAGTC CTCCCCCAGC-CGGGCGCCCGGCGG TGTATGTTGACGCCC  64 26
JRI60_RS19770 4817885 .. 4817895 +  -3.2  -3.81146   CAGAGGGACATGGAC                 CGGA GCG TCTG                 TTGTTGCTTGGGGGC  56 102
JRI60_RS19775 4820439 .. 4820467 +   -11  -2.62263   CGTCGTCGGCTGAGA       CGGGGGCC-CGGT GCCG ACCGAGGTCCTCG        TCATGTGCACGCGGT  59 28
JRI60_RS19780 4821036 .. 4821051 +    -6  -2.63102   CCCTCGCGCTTGACC              GCGGGG ATCG CACCGC               TACTGTGGGCGTCAT  46 28
JRI60_RS19785 4821680 .. 4821695 +  -7.5  -3.28712   CAGCCGGGAGATGCG              GCGCG AGGCGG CGCGC               TTGTGCACGACACCC  55 98
JRI60_RS19800 NONE
JRI60_RS19805 4826708 .. 4826734 +  -7.2   -3.1875   CGGCACGCTTGCTTC         CGCTCTTTCGCT GGC AGCGGGAGGACG         TTAGCTTGAAGTGTG  52 42
JRI60_RS19810 4827922 .. 4827952 +  -9.7  -3.90112   ACGGGCGAGCGGGCA      G-GGGCGGCGGACAG GCA CTC-CCGCCGCCCGC      TTTGCTTGAAGAACC  73 58
JRI60_RS19815 NONE
        ybeY 4831444 .. 4831459 +  -2.5   -4.1822   GTCCCCCCGGAACCG              TCTGC TTGCGC GCGGA               TTTCTTCCGCTCCCC  62 105
JRI60_RS19825 NONE
JRI60_RS19830 4833006 .. 4833017 +  -7.2  -2.63858   GAACTCCAGCACCTC                GCCC AGAG GGGC                 CTTCTGGATCTCGTC  48 520
JRI60_RS19840 4833855 .. 4833877 + -13.4  -3.15579   AGGGGACATCCACGG           GCCCTCGGAC CAT GTCCGAGGAC           TTCGTGGACGCTTCA  72 250
JRI60_RS19845 NONE
JRI60_RS19850 NONE
JRI60_RS19855 NONE
JRI60_RS19860 4838565 .. 4838597 + -15.6  -2.62613   TGGAGAAGATCAACG     GCCTTCGGGAGCGCC TGCT GGCGCTCC-GGGGGC      ATCTTTGACCTCGAC  74 109
JRI60_RS19870 NONE
JRI60_RS19875 4841276 .. 4841289 +  -2.3  -3.81089   CCGTTGCAGACGAGC               CCCTG AACA CAGGC                TTCTTCCTGTGTGTC  54 518
        lysS NONE
JRI60_RS19890 NONE
JRI60_RS19895 4846808 .. 4846822 +  -4.2  -2.61728   TCCCGTAGATTGCCC               CGCC CTTTACT GGCG               ATTGCTCTTGAGGCT  40 91
        bamA 4849296 .. 4849313 + -12.7  -3.57462   CGCCCGGTCCACGAG             CGGCCGT CTTC ACGGCCG              TTTGAAGATGGACTG  74 50
JRI60_RS19905 NONE
        lpxD NONE
        fabZ NONE
        lpxA NONE
        lpxI 4853204 .. 4853214 +  -2.4  -3.02144   TGTGGAATGCTCGCA                 GCCC AAG GGCC                 TGTTCCGGACACTGC  41 124
JRI60_RS19930 NONE
JRI60_RS19935 4855059 .. 4855115 +  -4.3  -3.81256   CAGCACCATGGCCGT GGCGATGGCGCCCGGGCCCGCCAGC AGCGGCATC GCTAGCG-GCACCAGCGCCA-CGTC TTCCTTTTTCACGCT  58 283
JRI60_RS19960 4858924 .. 4858946 + -12.7  -2.96274   CATGCAGACACGGCT          CGCG-GCGGG TAAT CCCGCGCGCG           TCTCGTTCTCGCGGA  65 89
JRI60_RS19970 NONE
JRI60_RS19975 NONE
JRI60_RS19980 4864735 .. 4864771 + -13.7  -3.14463   GTGTCCCGCAAAGTC    GAACGGCCACCCCCG AAACACA CGGGAGTAGCCGTTC    TTGGTACAGCCCCTT  73 124
JRI60_RS19990 NONE
JRI60_RS19995 NONE
        lpxK NONE
JRI60_RS20005 NONE
JRI60_RS20010 NONE
JRI60_RS20015 4872937 .. 4872952 +  -6.1  -3.21276   GGCGGAGGCGACGAC              GGAGC GAGCGA GCTCC               TCTTCTCCGGGGCCC  51 340
JRI60_RS20025 NONE
         gmk 4875492 .. 4875547 +  -3.9  -4.18506   CAGTTGGTGGATAAG CCGCCCCACCTGACGGCGCGGTGTCAC ACCG GTGACACTTCAGCGA-AG-TGGGGCTG TTCTTTTGAGCATCA  65 193
JRI60_RS20035 4878012 .. 4878036 +  -7.8  -3.53444   CTGTTTGGTTTTGAG          GGACCGAGTC CAAGC GACTCGGCTC          TTTGAAAGAGAGTAG  60 147
JRI60_RS20040 NONE
JRI60_RS20045 4878450 .. 4878483 +  -7.4  -2.55847   AAGCAAGAAGTCTTC     TTCCGGGTCCGCAGC GAAGA GCTG-GGGCCTGGAC     CTTGGTCTCGAGATT  50 182
JRI60_RS20050 NONE
         rrf 4881797 .. 4881843 + -21.7  -2.73124   GCTGCCGGATTTTTT TTGAAGGCCCCGAGTCCTCAC ATCAC GTGAGAACTCGGGGCCTTCGC CTTTGCGGGCTCCAG 100 31
JRI60_RS20060 4885003 .. 4885033 +  -8.2  -3.76125   TGGGTAAAGAGGGAG       CTCCACCCGGGA CCCCGAC TCCCGGGTGCTG       TTTCCATTAAGGTGG  68 70
JRI60_RS20065 NONE
JRI60_RS20070 4887686 .. 4887698 +  -6.9  -3.19602   CTCGGAGGGTAGCTG                CTCGG CCC CCGGG                TCTTCCTCTCCCGCC  51 75
JRI60_RS20090 4890415 .. 4890430 +  -3.2  -3.01712   GACACATCCCGTTCC              GTCGCGG CGT CCG-GGC              TGTTACAAGCCCCAC  42 39
        queA NONE
         tgt 4892990 .. 4893008 +  -5.2  -3.99324   TTTCCAAGCAACGAG             GCGGTTTG TGG CAGACAGC             TTTCTGATCCTCGCC  63 282
        yajC NONE
        secD NONE
        secF 4896324 .. 4896374 + -26.3  -3.53012   GGGCGGCTGAGTGCG CACCAAAGGCCCTCGTGCTCCGCG TCAC CGCGGGGT-CGAGGGCCTTCGGTG TTTCAGGGGCCGCGC 100 42
        recJ 4899358 .. 4899394 + -12.9  -3.28924   CGGGTGCCTATTGCA   CCGCGGGGCATGGCCG GTCGAA CGGCCC-GCCCCGGGG    TTCTAGAACGCGGTG  73 464
        aspS NONE
JRI60_RS20150 4904379 .. 4904409 +  -8.1  -4.79949   ACTCACGTGGACTCG       TGCCGCCTGTCTC CTCGT GGGGCTGGCGGCC       TTCTTTTTTTCCGCG  85 53
JRI60_RS20155 NONE
JRI60_RS20160 NONE
JRI60_RS20165 4906345 .. 4906355 +  -2.4  -3.73813   CCTGCCGGTCCTTCG                 CCGC GTA GCGC                 TTCTCTTCCTCGTTG  55 170
JRI60_RS20200 4915948 .. 4915960 +  -3.3  -3.01712   AGCTCCGTCAGGAGC                CGCTC GCG GAGCC                TGTTGCCGCGAGCGA  42 68
JRI60_RS20210 NONE
JRI60_RS20215 NONE
JRI60_RS20220 4920115 .. 4920133 +  -5.8  -2.73542   TGGCGAGGAAGGCCT             CGCCACCC AAC GCGAGGCG             TCATTCGCGGTTGAC  45 69
JRI60_RS20225 4922355 .. 4922373 +  -2.3  -2.71681   CTGAGCATCGGCGAA            GG-CGCGC TTGA GCTCGTCC             TCGTTGACCACGTTG  39 298
JRI60_RS20240 NONE
JRI60_RS20245 4925089 .. 4925099 +  -2.4  -3.25823   CAAGCGGTAGGCCGT                 CCAG CCC CGGG                 TTCGTATGCGCAAGA  44 31
JRI60_RS20250 4926257 .. 4926267 +  -8.2  -3.21276   TCCCGGAAGTGACGC                 CCCG GGC CGGG                 TGTTCTGGCCCGGCC  56 29
JRI60_RS20255 NONE
JRI60_RS20260 NONE
JRI60_RS20265 4928863 .. 4928886 +  -7.5  -3.31322   GGCGAGCTGACGGGA          TGACAGTGGC CGCGC GCC-CTGTCA          TTCTCGCCACTTACA  56 167
JRI60_RS20270 NONE
JRI60_RS20275 4931317 .. 4931329 +  -3.3  -2.78384   CCCGAGGGCGAAATA                CCCAC GGG GTGGA                TCTCATAGGCGACAC  40 268
        cpaB 4938981 .. 4938992 +  -5.8  -3.15574   GTGGGCTCGAGCGTC                CCGT AGTC ACGG                 TCTTCGTCCCCTTCA  49 20
JRI60_RS20320 NONE
JRI60_RS20325 NONE
JRI60_RS20330 NONE
JRI60_RS20335 NONE
        xseA 4945978 .. 4945995 +  -8.3  -2.63596   GGGTGAAGTCCCCCT             GGCACCC GGGC GGGCGCC              TCCTCTAGAGTCCCG  52 46
        xseB NONE
JRI60_RS20350 NONE
JRI60_RS20355 NONE
JRI60_RS20360 NONE
JRI60_RS20365 4950346 .. 4950365 +  -7.8  -3.05963   ACGGCACGACGAGGC            GGCGGG TTCGATTC CCCGCC             TCTTCCAATAGAGGT  53 172
JRI60_RS20380 4955951 .. 4955974 +  -3.8  -2.77899   CCCACACAGGATGCG          CT-GTTGGGCC AGC GGCTCGGCGAG          TACTTGGTGCGCCGA  41 319
JRI60_RS20385 NONE
JRI60_RS20390 4958757 .. 4958770 +  -6.7  -3.07876   TGGTCTCGCCCAGGT               CAACG CGAC CGTTG                TGGTTTCTGTCCTCG  51 424
JRI60_RS20400 NONE
JRI60_RS20405 4962491 .. 4962501 +  -2.4  -4.37886   AACAGCGTTCGAGGT                 GCGG CTC CCCC                 TTTTCTGGAACCTGC  65 149
JRI60_RS20410 4964187 .. 4964202 +  -4.6  -3.67597   CAGCTCGGCTTCGTA              GACGCG CTCG CCCGTC               TTCTTCACTCCGGCC  55 354
JRI60_RS20425 NONE
JRI60_RS20430 4972002 .. 4972012 +  -6.8  -3.25102   GCACTCGAAGAGCTC                 TCCG CGC CGGA                 TCTTGTCGATGCCGT  51 350
JRI60_RS20440 4974210 .. 4974224 +  -7.8  -3.01712   TCTCATACGGGCCGT               CGGCCA CGG TGGTCG               TGTTCCAGACGAAGG  52 163
JRI60_RS20455 4978434 .. 4978447 +  -9.5  -2.87211   GTCAGGTGCTCCACA               GCGGC CAGG GCCGC                TGTCTCGACGCCCAT  56 435
JRI60_RS20465 NONE
JRI60_RS20475 NONE
JRI60_RS20480 4982494 .. 4982508 +  -7.1  -3.14344   ACTCGACTGCGCGGA               CACGG TGCCT CCGTG               TTCCTCCACCAGGTG  51 226
JRI60_RS20490 4986706 .. 4986718 +  -6.9  -2.64616   GGATTTGAATGCGTG                CTCGG AGG CCGGG                TAGTGTCAATAGGCG  47 10
JRI60_RS20495 NONE
JRI60_RS20500 NONE
JRI60_RS20535 4996283 .. 4996314 +  -7.2  -3.21276   TCTTGAGATCGTTCA      TGCGGC-GAGCATTC CCC GAAAGCCCGGCCGCG      TATTGTAGAAACGCG  52 449
JRI60_RS20545 4997573 .. 4997591 +  -2.2  -3.05463   CAGCTGCGCTCCAGC             CCGTCGAG CGT CACGGGGG             TTCCCTCCGGGGAGT  41 386
JRI60_RS20555 4998939 .. 4998956 +  -3.5  -3.60098   GGCGTGTGGCCTTCA             TGAT-GGA CAT TCCGATCA             TTTCCCGTCCAAGCT  51 149
JRI60_RS20560 5002407 .. 5002445 +   -10  -3.65046   TGCCCCTCGGCCTGG   GGGGCCCTCGCGCCAGGG CCC CCCTGAGGCTTGCGCCCC   TTCTTCCGCTCACCA  70 65
JRI60_RS20575 NONE
JRI60_RS20580 NONE
JRI60_RS20585 5011258 .. 5011288 +  -6.8  -2.60075   CGCGCGGCGCCGGAA      GGCGTGAAGCCCG GAATCA TGGGCG-CACGCC       GTTCATTCCCCCGAG  47 19
JRI60_RS20595 5013508 .. 5013523 +  -6.8  -3.68222   CGGACGATTGTGATT              GG-CGGC CTC GCCGACC              TTGTTGGCGTTGGCG  59 453
JRI60_RS20605 NONE
JRI60_RS20610 5016669 .. 5016681 +  -5.5  -3.14602   TCCCGAAATGTGCCT                CGTGT GGA GCACG                TCTTCCTCCAATGAC  49 74
JRI60_RS20615 5017847 .. 5017901 + -16.4  -3.31792   CTCGAGGGTGGGGGG GC-CCCCGGCGAACGTGGCG-GCCTCG GTCA CGAGTCGCGCCTCGG-CGCCGGGGTGC TTCTGCAACTGGTGG  79 503
JRI60_RS20630 NONE
JRI60_RS20635 5023630 .. 5023648 +  -6.6  -2.71681   GAGCGCGACGCGGAT             CGGCCCTT TCT GGGGGCTG             TACTTGCGGGCGTTC  46 403
JRI60_RS20650 5027973 .. 5028003 + -11.9  -3.65522   ACAGGCATCGACCCG      CCTGTCGGTGGCGG TCAG CCGCGAC-GACAGG       TTGTTGGCGTAGGTG  72 393
JRI60_RS20660 5029533 .. 5029558 +  -2.4  -3.57792   TCGACGTGTTCGCCC         CCGTGTTCGT CCGGTA GCGCACTCGG          TTTCAGACTCGGTGC  48 9
JRI60_RS20670 5032535 .. 5032592 + -11.7  -3.12351   CGCCTGGCCCGCCGC CGTCCACGGCGTGTACGTCACGCCAGG GCCA CCGGGCCAGGCGGGCACGGCGTCGGCG TTCAATCTCACCGAC  63 309
JRI60_RS20680 5034662 .. 5034674 +  -4.7  -3.63515   CTGCGCGAAGTTGAA                GCCGG AAC CCGTC                TTGTTCAGCGTCAGG  55 496
JRI60_RS20705 NONE
JRI60_RS20710 5046500 .. 5046536 +  -2.2  -3.67597   CGGCGGATCGCTAAT   GTCCTCGGCAGAGAC CATGGCGC GACTC-GACGAGGGC    TTCTTCACTGGGAAG  51 27
JRI60_RS20715 NONE
        bacN NONE
JRI60_RS20725 NONE
JRI60_RS20730 NONE
JRI60_RS20735 NONE
        pyrE NONE
JRI60_RS20745 5050983 .. 5051024 +   -13  -3.29144   CGTCAGGTCTGATCC GGCCGCAGCAGCTGCTTGT CCGGA GCGAGCGGCTGCC-CGGCC TTCTGGAGCACATCC  73 54
JRI60_RS20765 NONE
JRI60_RS20770 NONE
        pgsA NONE
JRI60_RS20780 5056966 .. 5056978 +  -3.3  -4.11394   CAAGGCGAGGGTCGA                GGGTT CAA ATCCC                TTTTCCCGCTCCAAT  59 0
JRI60_RS20785 5057084 .. 5057115 + -22.4  -5.00884   TTTTCCCGCTCCAAT      CGAAGGCCCCCTGG GAGA CCAGGGGGCCTTTG       TTTTTTCCAGGCCCT 100 28
JRI60_RS20790 NONE
JRI60_RS20795 NONE
JRI60_RS20800 NONE
JRI60_RS20805 5061683 .. 5061703 + -14.1  -3.14132   CGCGACATTCAGCAA            CTGGTCTGA CAG TCAGACCAG            TTCGTGCCGCGCGCG  73 57
        rfbB NONE
JRI60_RS20835 5068083 .. 5068093 +  -8.2  -4.38154   GGCCGCGGCATCGGG                 CCCC TCG GGGG                 TTTTCTCCGCGGTCT  78 45
JRI60_RS20845 NONE
JRI60_RS20850 NONE
JRI60_RS20855 NONE
JRI60_RS20860 NONE
        rfbA NONE
        rfbC 5076697 .. 5076724 +  -3.2  -3.08706   GCCCACCGGCCTCCC        AGC-CGAGCGGCG GAA CCCCGCCCGAGCA        TGTTCACGTCTCCTT  44 66
JRI60_RS20875 NONE
JRI60_RS20880 5079023 .. 5079070 +  -7.6  -3.78934   TTCGGGCTGGGGCTG TTCCTGCTGCGCCGC-AACCGCT AGC GGCGCTGGGCGGCGTGGTAGGGG TTCTTCTCGAGGAAC  66 2
JRI60_RS20895 5082988 .. 5082998 +  -8.2  -3.28712   GTGGATGTCCGCACC                 CCCG AGA CGGG                 TTGTGAGGGGAGGGC  58 57
JRI60_RS20900 5084111 .. 5084167 +  -8.6  -3.88559   AGTGGGTGTCGCGCG TACG-GGGGAAGTGAGCGC-ATGCTCGG GGC CCGTGCATCGCGCCCGGTGCCCCACGAA TTTCTCCGCATGATT  68 12
JRI60_RS20905 5085664 .. 5085681 +  -2.6  -3.72695   AGAAGGCCTCGCGCA             CGGCCT GACGGA AGTCCG              TTTGGTAGCGCCGCT  55 362
JRI60_RS20915 5090385 .. 5090402 +  -6.3  -4.46854   GACGCATTCTTGGAT             GGATGAC GGTT GTCATTC              TTTGTTGTTGGGTGG  76 63
JRI60_RS20920 5093886 .. 5093898 +  -7.7  -3.61268   CATGGGGGGCACCTG                TTCGG GCC CCGAA                TTTGACACTTGCCTG  60 78
JRI60_RS20925 NONE
JRI60_RS20930 5099642 .. 5099655 +  -4.5  -3.29511   CATGAGTTCCCGGGT               CACGG GCTC CTGTG                TTGTAGGGGGGTGGG  49 59
         tgt NONE
JRI60_RS20945 5102600 .. 5102612 +  -4.7  -3.53012   GGCCTGAAACGACAA                GAGGG TCA CCCCC                TTTCCCAGGGGCGAC  52 34
JRI60_RS20970 5109599 .. 5109616 +  -3.3  -2.80816   CACCCTGCGCCGGAT             CGGC-ACG TGA CGACGCCG             TGTCATCGCTGAGAG  41 16
JRI60_RS20975 5112423 .. 5112436 +  -3.8   -3.3382   CCCCGGCTTGGTGCA               TGCC CCACGA GGCA                TTACTCTGTCCTCAG  47 90
JRI60_RS20980 5113484 .. 5113494 +  -4.6  -3.29144   CGTCCCGTACGAGCT                 TCGC GAA GCGG                 TTGTACGCGCGGTAC  49 178
JRI60_RS20995 5116625 .. 5116639 +  -3.4  -3.29144   TGCGGAAGGAGGGAG               CGTCCG GGG CGGGGG               TTCTGGAGGGGATCG  47 505
JRI60_RS21015 NONE
JRI60_RS21020 NONE
JRI60_RS21025 NONE
JRI60_RS21030 5127000 .. 5127021 + -11.5  -2.78816   GAGCCGCCCATCGCC           CGGAGGCCG CCAC CGGCCTCCA            TCTGGTCGCAGATCC  62 61
JRI60_RS21035 NONE
JRI60_RS21040 NONE
JRI60_RS21045 NONE
JRI60_RS21050 NONE
JRI60_RS21055 NONE
JRI60_RS21060 NONE
JRI60_RS21065 5138936 .. 5138955 +  -3.6  -4.02653   GCAGAATGAAATCGA            TGCGTTCCA GGA TGGAG-GCA            TTCTTTGGGTTGCTT  61 121
JRI60_RS21095 5146788 .. 5146815 +  -6.2  -3.44527   ACCCGTCATGGGGGT        CCACGTCTGCCGC AGG GCGGTGGA-GAGG        TTGTAGTGCTGGCTG  56 461
JRI60_RS21160 5172731 .. 5172746 +  -2.6  -4.56775   GCAGGGCATGTTACC              T-GACCT CTC AGGTCCA              TTTTTGAAACGAGCT  67 41
JRI60_RS21225 NONE
        istA 5184918 .. 5184956 +  -3.7    -4.015   CTCGTTTCAAAAATG  GACCAGGGAGCCTAGGTC ATCT GACCT-GCCTCCCCGGGA   TTGTTTCATAAATGA  59 11
JRI60_RS21235 5185859 .. 5185874 +  -2.6  -4.56775   GCAGGGCATGTTACC              T-GACCT CTC AGGTCCA              TTTTTGAAACGAGCT  67 41
JRI60_RS21240 5186380 .. 5186398 +  -2.3  -2.87132   GAGAGTCTTCCTCCC             CCTCGGG CAGTC CTCGAGC             TCTCTGCCCCGGGGG  40 44
        istB 5187260 .. 5187272 +  -3.3  -3.14132   CCAGCGTCGCTCCGC                TCCGA TGA TCGGC                TTCGTCCGGAACAGG  44 47
JRI60_RS21250 5188281 .. 5188291 +  -2.4  -2.76969   TTCGGCTCGAATCCC                 ACCG GAG CGGC                 CTTTAGACTCGCTTC  38 202
JRI60_RS21270 5193208 .. 5193222 +  -2.8  -3.52204   CACTTCGCCCCCTTC               TTGGAC CGG GTCAAA               TTCCTTTCCGGGTCG  49 180
        istA NONE
        istB 5196736 .. 5196783 + -13.2  -2.70932   TTGGGGGTTGTCGGG TGTTGAGCCGCCGGAGCGCGCCC GAA GGGCGCGCGCAGGCGTC-CTGCG TGGTTGCGGGCCGCG  67 158
JRI60_RS21295 NONE
JRI60_RS21315 5204641 .. 5204657 +  -6.5  -3.68351   GAACTGGGCGACCCC              GCATGGC CGC GCTGTGC              TTTGGGTCGTAGCGG  59 198
JRI60_RS21330 NONE
        groL 5208472 .. 5208520 + -15.2  -4.58395   GAATCGTTGGGTTGA TGCTTCGGCCCCGGGTGCCTTC CTCGT GGAGGTGCTCGGGGCCGTGGTG TTTTTAGGGGGTGGA 100 49
JRI60_RS21345 5211173 .. 5211204 +  -7.2  -3.02511   CTGGGCGCTCTTCAG      CTCGCGATCCAGCAC CAG GTGCAGG-TAGCGGG      TGTTGAAGAGGTGGG  52 516
JRI60_RS21355 5212984 .. 5213002 +  -6.6  -3.86822   CTGCCCGGCCTGACA             CTGGGACC CAG GGTCCCGA             TTTCTCAACGAATTC  62 84
JRI60_RS21360 5214412 .. 5214458 + -24.5  -3.60865   TCTTCTTCACCCCGA CCGGCCCTCGTCGGGCCGGT CCTCCGCC ACCGGCCCG-CGTGGGCCGG TTCTCATTTCCAATG 100 61
JRI60_RS21365 NONE
        nadC 5218918 .. 5218930 +  -6.9  -3.59979   GGCTGGGGGCGAGGG                CCTCG TAA CGGGG                TTTGCCCTCGGCGGA  58 55
JRI60_RS21380 NONE
        glpX NONE
JRI60_RS21390 5222609 .. 5222635 +  -2.3  -3.32521   CCGCTTGCGGGGAAC        CG-TGGCTCGAT TACA ATCCAGTCAACG         TTCTCGGCGTCTGGT  44 164
JRI60_RS21395 5223306 .. 5223322 +  -3.5  -3.16564   CGGCTCCGTTCACAT              CCGCGTC CCC GCCCCGG              TTGATGACGTCCACC  45 286
         eno NONE
        surE 5226421 .. 5226454 +  -4.4  -3.04792   AGGCGACTGAGGTTG     GCGGTGGCGGACGCC AGGTG GGTG-CGGCCGGCGC     TGTTCGCGCTGCTCG  45 31
JRI60_RS21415 5227607 .. 5227642 +  -8.8  -3.35813   ATGTCCGTGAAGTCG    CGGGTGATGATCGGCG CTGC CGCCGGTCTGCTCCTG     TTGCTTCCGCTCGCC  60 300
JRI60_RS21420 5229591 .. 5229608 +  -3.3  -2.58544   CAACCTCGACCTCAA             CGCC-GGC ATC GCCTGGCA             CTTCTGAGCCTGGAG  39 1
JRI60_RS21425 5231047 .. 5231057 +  -8.2  -3.01712   GATGTCTCCGGCCTG                 CGCC TGC GGCG                 TCTTCCGCACGAAGA  54 303
JRI60_RS21435 5235007 .. 5235044 + -10.5  -3.25073   AGCTGGCGATGAGCC   GGACG-GCCGCTGGATGA AGC TCTACCAGCAGCTCGTCC   TCTTCATGTTCGCCG  63 9
JRI60_RS21440 NONE
JRI60_RS21445 5237940 .. 5237967 +  -5.6  -3.28791   CCGGGCCCGCGAATT        GCACGG-TCTCAG GTG CTGAGAGTCGTCC        TTGTACAAGGGCAAT  51 78
JRI60_RS21450 NONE
JRI60_RS21455 NONE
JRI60_RS21460 NONE
JRI60_RS21465 5248821 .. 5248835 +   -10  -2.55074   GTCGGCGTAGGCCAG               CAGCAG GGC CTGCTG               TCCCTTGAGCTTCAG  53 203
JRI60_RS21480 NONE
JRI60_RS21485 5252547 .. 5252583 +  -2.8  -3.96068   GCCCGTGGGGGCCCG   GCTCGGGGGGACTCAGC GCTT GC-GAGGCGCCGTGGGC    TTCTTCTTGGGCTCG  58 47
JRI60_RS21495 5255512 .. 5255545 +  -3.2  -2.71268   GCTGCCGATCAATCG    CGAGGAGCAGTAGCCGG TCG CCG--TAC-GCTCCCCG    TAGTCTGTCCTGGCC  40 13
JRI60_RS21500 NONE
JRI60_RS21510 5258877 .. 5258889 +  -6.2  -2.70932   GCCCGCGCTCACCTC                GGCC TGCCC GGCC                TCGTTGACGACGGGA  46 455
JRI60_RS21530 NONE
JRI60_RS21535 NONE
JRI60_RS21540 5269418 .. 5269475 +  -7.5  -3.02144   GGAGGAATCTGGCTG CGCACCTCGTGCTCCAGCGTGCGCAGTG CCT CGCGGCGGGC-CTGGAGGACGCGGTCCC TCTTGGAGGGCGTGA  52 129
JRI60_RS21555 NONE
JRI60_RS21605 5281830 .. 5281850 +  -6.8  -3.05384   CATTTCCCTCGCACT            CCGCTCCT GAGCG AGGAGGGG            TTACCTGGAGGCGGA  51 16
JRI60_RS21630 5287834 .. 5287846 + -10.5  -2.73364   GCGTGATCCTGCCCC                GGGGC TGA GCCCC                TACTTGCGCTCGGAC  57 18
JRI60_RS21650 NONE
JRI60_RS21655 NONE
JRI60_RS21660 5293659 .. 5293683 +  -6.4  -3.31792   GCTCTGGTGGATGCG         GGTGCGGCGAG CGAG CTCGC-GCAGC          TTGTGGACCTGCTCG  53 364
JRI60_RS21670 5294941 .. 5294962 +  -6.5  -3.15544   GTGGGGCAGCAGCGT           CTGGGGGAT GGGG GTCCCCTGG            TTCGTCACCGTGAGG  51 230
JRI60_RS21680 5298812 .. 5298836 +  -4.9    -3.214   TTGAGAATCGCCGCG          TCCGCGAGGAG CTG CTCGTCGTAGA          TCTTCATGTGGTCCA  47 344
JRI60_RS21700 NONE
JRI60_RS21705 5302488 .. 5302504 +  -4.3  -3.28416   TGATGTTCCCTTGGG              CTTGGAC TCT GTCCGTG              TTGGTGTGGGTGGTG  49 210
JRI60_RS21720 NONE
JRI60_RS21725 5305107 .. 5305120 +  -5.2  -3.17941   GCCGTGATCTTGTCA               GCCC TTCCAC GGGC                TTCGTAACGTGTGAT  49 34
JRI60_RS21730 NONE
JRI60_RS21735 5309548 .. 5309575 +  -6.3  -2.90075   TGGGAGAGGGCTGGG        GTGAGGGTATCG CCGCC CG-TACCCCCAC        TGTGGTTGCGAGCCC  48 57
       coaBC NONE
JRI60_RS21745 5312105 .. 5312118 +  -5.9  -3.26471   GAGTCGCCGTCTGCC               CGCCG AAGT CGGTG                TTCGTCTCGGGGTAG  49 282
JRI60_RS21755 NONE
JRI60_RS21760 5314831 .. 5314847 + -12.3  -2.52543   GCTCCAACGTTCGCC              CGGGTAG AGG CTACCCG              TGCATTCGCGCGGGT  63 124
JRI60_RS21765 NONE
JRI60_RS21770 NONE
JRI60_RS21775 NONE
JRI60_RS21780 NONE
JRI60_RS21785 NONE
JRI60_RS21790 5320009 .. 5320041 +  -3.4  -2.87132   ACCAAACCCAAACAC     CCCTC-TCCCTTC GGGAGAGG GACGGGGTGAGGG      TATCTCGCCCCCCGG  41 40
JRI60_RS21795 5321420 .. 5321435 +  -5.4  -3.62591   GGGGCGCGGGCCTCG              TTGAGC TCCA GCTCGA               TTTCCCCCTTGTCGG  57 502
JRI60_RS21815 5325463 .. 5325476 +  -4.5  -2.82491   CCCGGCGTCACAAGC               CG-GCG GAT CGCGCG               TCTCATGGGTGTCTC  44 62
JRI60_RS21820 5327103 .. 5327120 +  -4.7  -3.72324   ATGGAGTAGCCGCCA             CCGCCGC TGGC GCGGTAG              TTGTTGATGGCGATG  55 273
JRI60_RS21840 5333835 .. 5333877 +  -5.3  -2.64616   CTCGTGCTGATATGG CTCCTGGCGGCGGTGCCGT GCGAG AAGACGCCGCCTCCGGGGA TGGTGTGCATCGAGG  44 169
JRI60_RS21845 NONE
JRI60_RS21850 5338230 .. 5338242 +  -7.7  -3.47227   CTCGGGGCGCCACGT                GACGT AGT ACGTC                TTCTGGTACTTGCGC  58 489
JRI60_RS21860 NONE
JRI60_RS21865 5340866 .. 5340897 +  -8.6  -4.30719   GAAAGGGGCGCCCGC      TCCTCC-CTTCGCCC GGC GGGCGGCGAGGCGGA      TTTGTTCTCAGCCAC  79 328
JRI60_RS21870 5341778 .. 5341788 +  -2.4  -3.33492   CCGAGGTCCCGATGA                 CGCC CAT GGCC                 TTCTGCGGTCCGTGA  44 0
JRI60_RS21875 5342714 .. 5342735 +  -5.1  -4.08216   CGCCGCCGGCATGAG           CATC-CCCAG TCC CTGGGTGAGG           TTTTCGGGCGGATGG  65 147
JRI60_RS21885 5343960 .. 5343978 +  -5.8  -2.82623   CATCCCTCGGGAAGC             CCGCTCGG GAG CCGTCCGG             TAGTTCTCCGCCAGC  44 134
JRI60_RS21920 NONE
JRI60_RS21925 NONE
JRI60_RS21930 NONE
JRI60_RS21935 5362417 .. 5362463 +  -5.7  -3.28924   GGGCCAGGTTCACCC CGTGCTCGGCGAGCACCAGCAG CGCC TTGCTGA-GCGTGCCGGGCCTG TTCTCCAGCACCATC  51 239
JRI60_RS21950 5365694 .. 5365733 +  -3.4  -3.05384   GCTTCCGCTGAGCCT  TCCTCGGGGCGAGGGCG GAATGGA CGCCCGGGG-CCGAGGG  TTACATCCCCAGCCG  42 30
JRI60_RS21955 5366139 .. 5366165 + -12.3  -4.98531   CAGGCCCTGTCACCA         GGCCCAGTCTC CTCGA GAGGTTGGGCC         TTTTTCATTTCCAAC 100 64
JRI60_RS21960 NONE
JRI60_RS21975 5372311 .. 5372330 +  -5.7  -3.14344   AACGATGCGTGAGCA            GCGGCGTG AGATC CAC-CCGC            TTGCTCCGCACCATC  49 235
JRI60_RS21990 5376450 .. 5376466 +  -4.3  -3.53224   GAAGCGGCGAGCGCC              TCGTGCG GCC TGCTCGA              TTTGACCCCGGCATC  52 4
JRI60_RS21995 5378806 .. 5378818 +  -5.5  -3.21099   GTGCGCTGACTCTTG                GGCGA GCT TTGCC                TTGCTCGTCCGGCCA  49 190
JRI60_RS22000 5380823 .. 5380853 + -18.3  -2.78463   CCGAACTGGCGGCGT       GGGCGTCGGCCGC GTTCG GCGGCTGATGCCC       TCTACTCCGCCGGGT  85 0
JRI60_RS22005 5384870 .. 5384882 +  -3.4  -3.54638   ATGAAGGTGCGCAGG                TACC CGGGA GGTA                TTTCCCGAGCCTTGT  50 392
JRI60_RS22035 5390514 .. 5390537 +   -11  -3.16564   GTCCGTCACCCATAA          CTCCCGCC CCGGAGTC GGCGGGAG           TTGATGCACTACCGC  64 26
JRI60_RS22040 NONE
JRI60_RS22045 5392112 .. 5392126 +  -5.7  -2.75481   GGCGCTTGAAAGTCA               TGCGA ACTAC TCGCA               TAGTTCGAGTTCGAG  45 167
JRI60_RS22050 5393047 .. 5393061 +    -7  -3.72695   AAAATCCAATACGCG               GCGCCG CGC CCGCGC               TTTCCTCGGCGGCAT  61 42
JRI60_RS22055 5394551 .. 5394561 +  -2.4  -3.29144   GCTCCGAGCCCAGGG                 AGGC GTA GCCC                 TTCTCGGCGAAGTCC  44 479
JRI60_RS22070 5397347 .. 5397390 +  -5.2  -3.76224   AGCTCGTTTCAAAAA TGGACCTGAGAGGTCAGG TAACATGC CCTGCCTATTCAGGGCCA TTTCGTAAATGGCGC  60 285
JRI60_RS22080 NONE
JRI60_RS22085 5400124 .. 5400136 +  -5.5  -3.85698   GGGAACACGGAGGGA                TCGCG AAT TGCGA                TTTCTCCGAGGCCCG  60 456
JRI60_RS22095 5401039 .. 5401067 + -13.1  -3.59979   GGGCCTCCCGCAGTT        CCTCGTCATGCTC GGC GCGCGTGGCGAGG        TTTGCCATCGAGACG  75 179
JRI60_RS22110 5403162 .. 5403177 +  -5.4  -3.90729   TGGCGTTGCACACGG              GCGTCGC GGT GCGA-GC              TTTGTAGGGGTTGTT  63 261
JRI60_RS22120 5406501 .. 5406546 +  -5.2  -2.89564   GTGGCGCGCGGCCGA CCAGGCGCGGCGCCGCCCATG CTTGC CGTGGACGGCGT-GCGCACGA TGTGTCGGGTAGCGC  46 256
JRI60_RS22125 NONE
JRI60_RS22130 5408388 .. 5408402 +  -2.7   -4.1673   GAGCGCAGCACATCC               GTGGC GGGAA GCCTC               TTTATTCGAGGCTTA  63 62
JRI60_RS22135 5409318 .. 5409336 +  -7.3  -2.70932   GTGCCGCACGAAGTG             CGCCGCC TCCTC GGCCGCG             TGGTTCAGCGACAGC  49 476
JRI60_RS22145 NONE
JRI60_RS22150 5414404 .. 5414428 +  -3.5  -3.73402   CACGAGAGCGAGCGA         TCCTGCCGCG TCGCCT CGC-GCTGGA          TTTCGTCCAGCATGT  56 184
        tilS 5416508 .. 5416520 +  -2.6  -3.32844   GCACCCGGGCATGCT                CGGG ACGAC TCCG                TTATAGAGTCGACCA  44 7
        ftsH 5418651 .. 5418680 + -21.5  -3.60151   TTCCGTGTAGAACCC       GGGCCCTCTCCAC TCAC GTGGGGAGGGCCC        TTCTGCTTTCCGAGC 100 53
        folP 5420049 .. 5420064 +  -3.9  -2.52676   CCGCAAGCTTGTTTA              GGGGG CTCGTA CTCCC               TAGCTTCGGGGCCTG  40 110
JRI60_RS22180 NONE
JRI60_RS22185 NONE
        acpS NONE
JRI60_RS22195 NONE
        tsaE 5424868 .. 5424880 +  -6.9  -3.06815   TCCTGGGCAGAGCCT                CCCGG TCC CTGGG                TATCTTCCGCCCCAT  51 155
JRI60_RS22205 NONE
JRI60_RS22210 NONE
JRI60_RS22215 5429411 .. 5429438 +  -3.3  -3.63515   CGGGCGGATGAGCGC        CTCCACCTCGGC CTTAT GCCG-GGCGAAG        TTCTTCACCGTGCCG  53 507
        argG 5434357 .. 5434400 +  -9.8  -3.14132   GGTTTGCGTGAAAAT GAGAATTCC-GA--GCCGGGG ATGAG CCCCGGCGGTCAGGAGTTCTC TTCATGCGAACCGGA  62 59
JRI60_RS22240 5435378 .. 5435432 + -19.3  -3.62224   CTATTGACGCCCGGC CGGAGCCGCCTGGAG-AGTGCATCGC ATGA GCGATTCCCTTCGCCGGGCGGTTCCG TTGTTCGCGGCCTGT 100 34
JRI60_RS22245 5436931 .. 5436960 +  -9.2  -3.16742   CGTGGAGTCGCTCGA       GAGTGCCCTGGC CCGTGA GCCTGGGGACTC        TTGGTACAGGTTCAG  59 288
JRI60_RS22250 5438665 .. 5438675 +  -8.2  -2.74012   CCGTGTTGCGCGAGT                 CCGG CAG CCGG                 TGCTTCAGGTGGTGG  51 373
JRI60_RS22260 5440501 .. 5440516 + -10.4  -2.85351   CGCCCGCTTCCCTGG              GGAGGG CATG CCCTCC               TATCCTCTCGACAAA  59 45
JRI60_RS22265 5441155 .. 5441168 +  -3.8  -2.64416   ATCGTCTCCGCCAAC               GGCT TGTCCC AGCC                CTTGTCGTAGGCCTG  39 329
JRI60_RS22310 NONE
JRI60_RS22315 NONE
JRI60_RS22320 NONE
JRI60_RS22325 NONE
JRI60_RS22330 5453853 .. 5453884 +  -6.5  -3.14132   TGAGCCCGTCCACCT      GGAGC-AGGTGGTG CACCA CACCCCCGCGCTCC      TTGATGCGAAGGGGC  51 123
JRI60_RS22380 NONE
JRI60_RS22385 NONE
JRI60_RS22390 5471565 .. 5471582 +  -9.1   -3.0497   GGGGCCCCGTCAGGT             GCGTGGA GACC TCCGCGC              TCTTCCACGTGGTGT  54 248
JRI60_RS22415 5476137 .. 5476194 +   -25  -2.64747   AAGGAATAACCTCCT CGTCACGGAGCAGACG-CGGCCTCCGCC CTCG GGCGGGGGCCGCCGTC-GTTCCGGGATG CTTGTGGTGGGATGC 100 32
JRI60_RS22420 5477218 .. 5477238 +  -7.5  -2.57013   AACTTCCGGAGGTAC            TTCCGCGAG ACG CTCGGGGAG            TGACTTGGGTTGACC  50 2
JRI60_RS22425 5477798 .. 5477820 +  -3.3  -3.65046   CGCCCGCCAGCACCT          GGC-CCAGTG CCAC CGCGGGCGCC           TTCTTCGCGTAGCCG  53 161
JRI60_RS22435 5479106 .. 5479120 + -12.8  -3.21395   TCGCGTTCGTCGTGT               CGCGCG GTC CGCGCG               TGTTGTAGAGCGGCT  67 323
JRI60_RS22460 5485943 .. 5485964 +  -2.3  -3.18264   GCCCCCGGGGAAGGT           CTTC-ACGTC GTC GAGGTTGAAG           TTCGTCGGTGAGAAC  44 119
JRI60_RS22490 NONE
JRI60_RS22495 5494346 .. 5494362 +  -5.8  -3.33261   TGCGGGTGATGAGCA              CGAGCT TGCCC GGCTCG              TTGTCGGGGTTGAGC  51 500
JRI60_RS22515 5499524 .. 5499551 +    -4  -3.28712   GGCGTTGGTCGGCGA        CTCGATGGCGTT CTCC AGCACCACCGGG         TTGTAGAACACGGAG  49 214
JRI60_RS22525 5503216 .. 5503228 +  -2.6  -4.62471   CCCAAGTGTCGGGTT                GTGC CTCCT GCGC                TTTTTCACCGTTGCC  70 90
JRI60_RS22530 NONE
JRI60_RS22535 5504395 .. 5504413 +  -4.5  -3.33696   AATGACGAGGACATC             CATGAGC AAGAA GCCCATG             TTGATTGCCCGGCGG  49 36
JRI60_RS22540 5506823 .. 5506844 +  -2.1   -4.1822   TACAGCGGTACGACC           TCCACGGCG AGCA CGTCGCGCA            TTTGTTGGCGTGCGC  64 158
JRI60_RS22555 5509680 .. 5509716 +  -6.4  -2.71364   AGGGTGATGGTTCCA    CGGGTGGAGACACCAC GGATG GTGGTGGCACCACGGG    TGGTTCGGCGGATGA  47 153
JRI60_RS22560 5510415 .. 5510425 +  -2.4  -3.06162   ATCCCTGACATCCCC                 CGAG GAA CCCG                 TCTTGCGCTCCCATC  41 33
JRI60_RS22565 NONE
JRI60_RS22570 5513173 .. 5513219 +  -5.1  -3.17075   AGCTCCAACCGTAGC GCTCCCTG-GCTCGCCTGCTC CAACTGT GA-CTGGCGAGCGCGTGGGGC TTGCGTTAGAGCCGC  49 27
JRI60_RS22575 5514523 .. 5514576 + -12.4  -3.21747   CCAGGAGGCCCCCGC GGCTCCGTGAGCCCGCGGGAGTCCTC CGCC GAGG-CGGCT-CGGGCTCAGGGGGCC TTCGTGGTGAGCTCC  71 16
JRI60_RS22595 5519273 .. 5519283 +  -2.4  -3.28924   GCAGCAGCACCGCGA                 GCAG CGC CAGC                 TTCTCACCCAGGCTC  45 374
JRI60_RS22605 5522595 .. 5522623 + -23.9  -3.66908   GAGTTGAGCTGAACG        GCCCCTGGGAGGC ACT GCCTCCCGGGGGC        TTCGTTTTGCGGGCC 100 53
JRI60_RS22610 NONE
JRI60_RS22615 5525102 .. 5525120 +  -6.6  -3.52906   GAACTTGTAGACGAG             GGCGCTCG CCT CCAGTGCC             TGTTTGTCCGAGTGG  56 401
JRI60_RS22625 NONE
JRI60_RS22630 NONE
JRI60_RS22635 NONE
JRI60_RS22640 5527279 .. 5527294 +  -4.6   -2.8547   TGGCTGAAGATGCTG              TCGGGC AAGT GACCGA               TGTGCTGTAACCCGT  44 14
JRI60_RS22645 NONE
JRI60_RS22650 5529560 .. 5529573 +  -5.9  -3.38316   CCATCCGCTGCATCA               GGTGC TCGA GCGCC                TTCGTTGGCTCCTGG  51 77
JRI60_RS22670 5532744 .. 5532766 +  -3.2  -3.14132   CGCGCATGGGGCTCG           GGCGCCACGC TCA GGGTGTCCCC           TTCGTACAGCACCAG  45 393
JRI60_RS22700 NONE
        rimI 5542105 .. 5542118 +  -3.7  -2.78463   GCAGTGCTTGACACG               GGGTG CTCC CTCCC                TATACTCGCGGCCCT  41 127
JRI60_RS22710 5542622 .. 5542640 +  -4.4  -3.15544   TCGCATAGGTCGCTT             GCCCCGCA CCC TGGGGAGC             TTCCTCGACATCGCC  47 66
        rpsG 5543218 .. 5543247 + -21.5    -3.695   TTATGTAGTACCCGG       CACCCGGATGCGG CCCC CCGCGTCCGGGTG        TTTCAGGTCTTTGAC 100 50
        fusA 5545413 .. 5545443 + -11.1  -3.77241   CGTTGAACCGCTGAC       TTGACCGCTCCCT CGTAA AGGGGGCGGGCGA       TTTAGATTGACGTTT  77 27
         tuf 5546725 .. 5546782 + -10.6  -3.05384   TCATCGCGTAGTTTC CGTCGTACCCACTTCCCTGGTCTTTT GTTCAG AAAAGTCCGGGGAGGTGGGAATAAGG TTGCATCCACCAGGG  62 30
        rpsJ 5547217 .. 5547248 +  -2.3  -2.52464   TGGAGATCAAGTCCT     GAGGAA--GCG-GGGC TGA GCCCTCGCGGTTCCAC     TCCGTTCCCCAGAGG  37 24
        rplD NONE
JRI60_RS22740 5548178 .. 5548201 + -13.2  -2.70932   TCTTCGAGGGAGGCG          CGGTCTAGCGC ACG GCGCT-GACCG          TCGTTGAGGAACCAC  67 18
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP 5550923 .. 5550934 +  -5.8  -2.71731   ATCGTCACCCGCAGC                GAGC TGGC GCTC                 TAGTTCCGCCCTCGG  45 11
JRI60_RS22770 NONE
        rpsQ NONE
        rplN 5551987 .. 5552000 +  -2.3  -2.66316   CATGAAGATCATCTC               GCTCG CTCC CGAGG                TCCTCTAGTAGGGCG  38 4
        rplX 5552442 .. 5552478 +  -7.1  -3.71649   GAGGGCGGGCGAGCA    CACCGGAAGCCCTGAAG AAT CGGTAGGGGCTCCGGTG    TTTCCAGTTTCCACG  61 92
        rplE NONE
JRI60_RS22795 NONE
        rpsH NONE
        rplF NONE
        rplR NONE
        rpsE NONE
        rpmD NONE
        rplO 5556479 .. 5556512 + -18.1   -3.8211   CATCCGTGTAGGATT     CCGCGCCCCTTTCCG AATT CGGACAGGGGCGCTG      TTGTTCTGGCTGAAA 100 80
        secY 5557914 .. 5557952 + -17.5  -2.71483   CGAGGAAGTCGTTCT  CG-GGCGCTCCTCCCC CTCACCCC GGGGAGGGGCGCCTCG   TCGTTCCAGGGGTGT  80 42
JRI60_RS22835 5558717 .. 5558745 + -15.9  -3.14564   GGGCCACCAGGCAAG        GGCCGGGCGCGCG GAG TGCGTGCCCGGCG        TTCGTCCAGGAATGG  78 57
        infA 5559313 .. 5559333 +  -3.2  -4.36914   TTCCGCGGAATGGCG            GACAGGCC CTCGA GGCTTTTC            TTTTCTAAAAGCGAA  66 52
        rpmJ NONE
        rpsM 5559894 .. 5559918 +  -3.4  -3.63515   CGGCATCGTGCGCGC          CAAGCCGGCG GCGGG CGCTCGCTAG          TTCTTCCACCTGCGC  53 1
        rpsK 5560423 .. 5560433 +  -2.4  -2.78712   GCCGTCAGCCCAAGC                 GCCG CCG CGTC                 TAGTTCCATTCCGGG  38 12
        rpsD NONE
JRI60_RS22865 5561458 .. 5561493 +  -8.9  -2.80816   TCGAGCGTGGCTTCG    GCACCACGCTGGGCA ACTCGC TGCGCCGCGTGCTGC     TGTCGTCCCTGCAGG  54 189
        rplQ 5563038 .. 5563078 + -24.1  -3.87373   GGTAGGGTAGGTAGT  GCACGGAAGCGTCCTTCCC CCT GGGAAGGGCGCTTTCGCGC  TTTCTGGGGCCTGTC 100 53
JRI60_RS22895 NONE
JRI60_RS22900 NONE
JRI60_RS22905 5569694 .. 5569718 +  -8.6  -3.05844   GGTGTCGCGGCGGCG         CGCGTGAGTCC CCGA GGGCTCA-GCG          TCTTCGGCTGACGAG  55 19
JRI60_RS22915 5571709 .. 5571735 + -12.5  -3.56821   CAGCGGACGTGCGGA         CATGTAAAGTG TCAAC CACTTTACATG         TTTACCCGCTATGGT  74 63
JRI60_RS22920 NONE
JRI60_RS22925 5575119 .. 5575131 +  -3.3  -2.85999   GACCGGGAGTCGTGG                CTGAG GGT CTCCG                TGTAATGTCCAATGG  41 22
JRI60_RS22930 5577497 .. 5577518 +  -7.3  -3.01712   GTGGGGCCTCGCTCA           CAGAC-GCGT CGA GCGCTGTCTG           TCTTGGGCGCAGGAC  51 104
JRI60_RS22935 5579079 .. 5579106 + -12.1  -3.25787   GCGCATGACGTAGCC        TGGAGACCTCT TTCAAC GGAGGTCTCCA         TGTTCGTGTTCAGTC  71 54
JRI60_RS22940 5580005 .. 5580027 +  -4.2  -3.21747   GCCGGGGGACGATCT          GCTC-TTCC GTGAGA GGAATGAGC           TTGCTGATCGAATAG  47 97
JRI60_RS22955 5583683 .. 5583703 +  -6.1  -3.17146   GAAGACCTCGGTGAG            GATGGCC TGGTCGC GGCCGTC            TATCTTCTGGAAGGC  51 501
JRI60_RS22970 5587962 .. 5588007 + -16.1  -3.00298   CCAGCAGCGCTCCAA CCCCCAGTCCCCTCCCTCTCCC TCC GGGAGAGGGTCGGGG-TGAGGG TATCTCGTTCCCCGG  79 63
JRI60_RS22975 NONE
JRI60_RS22980 5589758 .. 5589791 + -14.5  -3.29829   CCTCTGGCTCATCGA     CGGGGTGGGGAGTCG CTGA CGGCGCCCCATCTCG      TTCTACGGACGTGTC  78 7
JRI60_RS22985 5590394 .. 5590441 +  -6.9  -3.14132   CTGTGGCTCGTGGGC CTGCTGGGTCCCGTGGCCTCGC ATGCG GCGAG-CTACGAGGTCATGCAG TTCGTGAGCGAGAGC  52 126
JRI60_RS22990 NONE
JRI60_RS22995 5597155 .. 5597167 +  -4.1   -4.1822   TGGTTAGAGAAGGCC                CTTTG TCT CAGAG                TTTGTTGAACTGGGC  65 114
JRI60_RS23010 5601014 .. 5601040 + -11.5  -3.59979   CATAAAGCCTTGAAG         TGACGGGCCAG TGCCC CTGGCCCGGCG         TTTGCCATGGCGGGC  72 331
JRI60_RS23015 NONE
JRI60_RS23020 5607517 .. 5607533 +  -2.3  -4.08706   TGGTTGGTTCCGCGA              TATTGTT GAT GGCAATA              TTTGTGTGGTCAGAG  58 68
JRI60_RS23025 5611431 .. 5611457 +  -3.6  -3.19192   CGTGCTCCTCGAGAA        G-CCCGTGGCC ACCAAA GGTCTCGGGGC         TTCAATTGGGTGCGG  45 106
        mutL 5616658 .. 5616706 +  -9.3  -3.28712   GCCGGGCTCGTAGGC GGAGTGCCCCGCGTCCGGGATGA TCT TCAGCTCCGCCTCGGGCCACGCC TTGTGCAGGGCCCAG  61 98
JRI60_RS23050 NONE
JRI60_RS23055 5618499 .. 5618519 + -12.5  -2.68942   ATCGACCTTTCTCCT            CGCCTCCCT AGA AGGGTGGCG            CTTGTCTGGCCCCCT  65 15
JRI60_RS23060 5619715 .. 5619738 + -19.6  -5.22312   GGTCGTCCCCTCCAA          GGGCCCGGGT TCAC ACCCGGGCCC           TTTTTTCATGTGGCT 100 80
JRI60_RS23070 NONE
JRI60_RS23075 5624469 .. 5624481 + -10.5  -2.81872   GTGTAGGTGACCTTG                CCGCC CAC GGCGG                TGGTGTTGTGGTAGC  57 342
JRI60_RS23110 5633365 .. 5633377 +  -7.7   -3.2794   CAGGTTGGCGTCGCT                GATGC CTC GCATC                TTCGTGTCCGTGAGC  54 521
JRI60_RS23120 NONE
JRI60_RS23125 NONE
JRI60_RS23130 5639027 .. 5639069 +  -6.9  -2.87344   CCGCTCGAGTCCGCG GGCGCTCGCAACGTA-GAGG TGAT CGTCGTCCATCGCGAGCGCC TATGTCGAGCCGATG  50 524
JRI60_RS23150 5644495 .. 5644511 + -10.1  -2.57463   CCCAACGGTGCCGGG              CTCCTGC TGA GCGGGAG              GTTCTGAGACGAGTT  57 2
JRI60_RS23155 NONE
JRI60_RS23160 5646253 .. 5646296 + -13.9  -3.16191   GAGCTCACCCGGTGA CGTCCGCGACGG-CCGGTCCG GGCA TGGATCGGTCCGTCACGG-CG TTGGTCCCGGTGTGC  73 26
JRI60_RS23165 NONE
JRI60_RS23170 5649003 .. 5649030 +  -4.6  -3.21416   GGGGACGGTGCTGTA        CGAGGCGGTGAG GGAC CACCTCGCCACG         TTGCTGGTGGCGGTG  47 420
JRI60_RS23175 5650423 .. 5650437 +  -3.4  -2.72344   TCGCGCAGTAGTGCG               GCCCGG GTC TCGAGC               TCCTTGAAGGTGCGG  40 30
JRI60_RS23180 5651326 .. 5651360 +  -9.3  -2.72344   AGGTGCCGTTGGTGG    AGCCCAG-GTCGC-GCA CCG TGCAGCGGCCCTGGGCC    TCGTTCCACCTGAGC  54 193
        greA 5652411 .. 5652440 + -19.3  -2.98072   TTGAGGGCGAACAGC       CGGGGGAGCGGGC ACCA GCTCGCTCCCCTG        TGTCGTTCTGGTGGC 100 50
        recG 5655568 .. 5655595 + -18.5  -3.14132   GTTGCAAATAAAAAA        CGGTGGCCCCA CTGAAA TGGGGCCACCG         TTCGTCCGGCGAACC  90 440
JRI60_RS23230 NONE
JRI60_RS23235 5669453 .. 5669496 +  -3.9  -3.01791   CACTGAGCGTGCGGG CCGTGCATGCC--CCCTCTCCC TCT GGGAGAGGGCTGGGGTG-AGGG TCTTCCCACCCGCGT  44 35
JRI60_RS23240 NONE
        thrC 5671508 .. 5671566 + -28.5  -2.65354   GGGCCGAGGATTTCA CTTCTCACCGGTGAGAAGTGGATTCGG CCCCC TCGGTTTCACTTCTCACCGGTGAGAAG TGCATTTGAAATACC 100 59
JRI60_RS23250 NONE
         tmk NONE
JRI60_RS23260 5673506 .. 5673532 +  -5.8  -2.62184   TGTAGGGAGAACAGG        CCCCG-GCGGC ACGCTC GCTGTACGGGG         TCCTGTCACAAGGGG  44 118
JRI60_RS23265 5674683 .. 5674739 +  -2.7  -2.86164   CCGGGCCGGTTCAGG GAATCGGCCGGGCGGTGGGAGCGGGC GCCTCG GCCCGCTCGAAGCGCC-GGAAGAAGC TGTCCTCGTTCCAGC  41 55
        asnS 5679937 .. 5679954 +  -9.8  -2.79796   TGATGGCCCCCATGG             CGGCGG CCTGAT CCGCCG              TGTAGTCGAGTCCCA  54 421
JRI60_RS23295 5687297 .. 5687333 +  -7.1   -3.4072   GCCCGCGCCGGCCGA    CAGCTCGATGTAGCTGG TGC CCAGCATCATCGGGGCG    TTCTCCTCGGGGATG  53 313
JRI60_RS23345 5707391 .. 5707447 + -10.6  -2.72461   GCGGGCACCGGCTCG GGGGCAACCG-CGAGCCCCGTGTCTGG CTCA TCGGCCTCGGGGCTTGGCGGAAGGCCC GTTTCGGGCGGCTTG  57 307
JRI60_RS23355 5710334 .. 5710354 + -14.1  -3.14132   ATCGCTCGGGAGCAA            CTGGTCTGA CTG TCAGACCAG            TTCGTCCGGAACGCG  73 40
JRI60_RS23415 5722681 .. 5722691 +  -2.4  -2.65298   CCTGCTCAGGACCGC                 GCGG AGA CCAC                 CTTCTGGTCGATCGC  38 47
JRI60_RS23425 5724652 .. 5724672 + -11.1  -3.21276   GTGAGGTACCGGGAG            CGGGCGTGG GCT TCACGTCCG            TGTTCTGGCCCGCGA  62 55
JRI60_RS23435 5726860 .. 5726875 +  -2.4  -2.52464   AACCAGACTCGCCCA              GGGGCC CGCG GGCATC               TCCGTTGAGCGGGCC  37 72
JRI60_RS23450 5730406 .. 5730421 +  -3.9  -3.28712   CACCGTCACCTTCTG              CTCGC GAGGCA GCGGG               TTCTCCACCCGGAAG  47 401
JRI60_RS23485 5738872 .. 5738907 + -19.7  -3.44146   CCTCCGCGCAACACC    CCGCGCCCGGTCACC TCTCAT GGTGTCCGGGCGTGG     TTCGTTCTCGAACCG 100 58
JRI60_RS23490 5740868 .. 5740901 +  -5.9  -3.05022   GGGCCCGGGACGAAT     TCGCGCGCTCGTTTG ACCC TGAATGACCGCGCGC      TCTCTCTATGCGCAC  49 41
JRI60_RS23495 5742533 .. 5742547 +  -7.1  -3.54741   CTGCGGCAGATGGAC               GCGCT CTGGT AGCGC               TTTCACCGAGTGGTC  58 181
JRI60_RS23500 NONE
JRI60_RS23505 NONE
JRI60_RS23510 NONE
JRI60_RS23515 5746563 .. 5746582 +  -3.5  -4.45083   CGAAACGCCGGGTCC            GGCCC TCTCATTCTC GGGCC             TTTTGTCCCTGTCCC  70 86
JRI60_RS23520 5748461 .. 5748515 + -17.1  -2.70932   GAAGTACTAGCGGCG GGCGGGCCACCACCGGGTGCGAG-CG GTGC TGACTCGCACCCGGTGGTGACACGGG TGATTCCGCCGCCAG  80 31
JRI60_RS23560 NONE
JRI60_RS23565 NONE
        nagA NONE
JRI60_RS23575 5765472 .. 5765494 + -11.2  -2.73994   CGGGAGACAGTCCCG           AGCGCGCCAG GAG CTGGCGTGCG           TCCTCTTCACCGAGT  57 209
JRI60_RS23590 NONE
JRI60_RS23595 NONE
JRI60_RS23600 5771092 .. 5771111 +  -3.4  -3.09834   AGCCGGGTGAGGCAC            TCCTGCCA GAGG TGGCCGGC             TTCGGTGGTCACGTC  43 266
JRI60_RS23625 NONE
JRI60_RS23630 NONE
JRI60_RS23635 5781538 .. 5781559 + -12.3  -3.15147   ACAGCCCTTCGGGGC           CGTCATGGG AGGA CCCATGGCG            TGTCTCTTGCTTGCC  69 129
JRI60_RS23640 5782828 .. 5782878 + -11.2  -4.46155   AGTCCGGGAACGACG TACCG-AGCGCTTGCTCGTCTCGC GCTGA GCGGGGCG-GCAAGCGCTCCGCCA TTTTCTCCATCTCTC  95 39
JRI60_RS23645 5785364 .. 5785390 +  -5.1  -3.60234   GTGCACCAGCCACTT        CGGTGGCCTAGG TCGA CC-AGGTCAACG         TTTCGCAGTCTGTCA  54 83
JRI60_RS23650 NONE
JRI60_RS23655 5785866 .. 5785899 +  -7.4  -2.55847   AAGCAAGAAGTCTTC     TTCCGGGTCCGCAGC GAAGA GCTG-GGGCCTGGAC     CTTGGTCTCGAGATT  50 182
JRI60_RS23660 NONE
         rrf 5789213 .. 5789259 + -21.7  -2.73124   GCTGCCGGATTTTTT TTGAAGGCCCCGAGTCCTCAC ATCAC GTGAGAACTCGGGGCCTTCGC CTTTGCGGGCTCCAG 100 31
JRI60_RS23680 NONE
JRI60_RS23685 NONE
JRI60_RS23690 NONE
JRI60_RS23695 NONE
JRI60_RS23700 5797993 .. 5798013 +  -7.5  -2.56596   GACAGGGGGGCATCG            CGGGTGG CATTTAC CCGCCCG            TCGCTTCGTCGGGGC  50 46
JRI60_RS23705 NONE
JRI60_RS23710 5798199 .. 5798247 + -22.5  -4.07568   GGTGCGCCCACACAG ACGAGAGGCCGTGAGTTCGGGGA CAA TCCCAGGGCTCACGGCCTTTCGC TTTTCCGGGCCCCAG 100 28
JRI60_RS23715 5799146 .. 5799162 +  -5.7  -3.30124   ACATGAGCAGCGGCG              TGGCCAG CTT CCGGCCG              TTCTCCAGCGTGAAG  51 478
JRI60_RS23730 5801963 .. 5802002 + -12.1  -3.60792   ACGGAATAGGTCCAG  TCCCCGCGCCCTACCTG GGATGA TGGGTGGGGCGTGAGGA   TTTCCAGCTTCCCCA  74 32
JRI60_RS23735 5803961 .. 5804017 +  -8.5  -2.68886   GGGGGAACCCTTGTG CTCGAGATACCCTCACCCTTTCCCTCT CCC GGAGGGAGAGGGGAGGGGGGTCACGGA TGGGTTCTTAGTTCC  52 171
JRI60_RS23760 NONE
JRI60_RS23765 NONE
JRI60_RS23775 5815085 .. 5815105 +  -3.3  -4.17132   TGCTTTAAAGGAAAG            CAGTTAATT CTT GATTGGCTG            TTTCTTCCGGACTTT  63 411
JRI60_RS23785 5816202 .. 5816252 +  -7.3  -3.41024   TGGGTGCCGGAACTC TGAGTGGCGCCGTGCCCGTGTCG ACTTC CGACGCGCCCGCGCCCCCCCTCG TCTTCTCTTCGCGGA  56 58
JRI60_RS23790 5825855 .. 5825913 +  -6.1  -2.94199   CGATACGAACCCCTC GGTGGCGCTGGAGAAGGACGAGGTC TTCGTCTTCCC GGCCTCGTCC-TCGC-AGCGTCGTC TCTGGTTCCTGGATC  48 45
JRI60_RS23795 NONE
JRI60_RS23800 NONE
JRI60_RS23805 NONE
JRI60_RS23815 NONE
        hppD 5844887 .. 5844899 +  -6.9  -2.94872   CGTCCGTAGCCCCAC                CGGCG CAT CGTCG                TCATTGTTCCGTGGA  51 89
JRI60_RS23835 5848809 .. 5848839 +   -24  -5.53991   CAGCCGGGGCCACTC       GCCCCGCCTCCGTG TCC CTCGGAGGCGGGGC       TTTTTTTCGTCCGTG 100 28
JRI60_RS23840 NONE
JRI60_RS23845 NONE
JRI60_RS23850 NONE
JRI60_RS23855 NONE
JRI60_RS23860 NONE
JRI60_RS23865 NONE
JRI60_RS23870 5891875 .. 5891898 + -13.8  -2.56596   CCCGGACCCGGAACG          CCCAGCACGC CCGC GCGTGCAGGG           TCCATTCCTCGCCAG  65 202
JRI60_RS23885 5893978 .. 5894027 +  -3.3  -2.79878   CAGACGGGCCGAGGA GGGCCGCTGACGGGGGCCGCCT GAGCAGG AGTAGGCCCATGGCT-CGGCCC CTTTGCGTGAGTCCC  40 126
JRI60_RS23890 5894948 .. 5894962 +  -2.1  -3.32698   GTTGCCTGGCCGTCG               TTCTG GTAGA CAGAG               TCTTATCTCGGGTCG  44 237
JRI60_RS23895 5898024 .. 5898064 + -10.5  -2.89447   AGGGCAACACGTGAC GGAGATGGCCCC-TGTCT TGGTCC GGACATGGGGCCAGTTCC  TCCTTCTCCTTGGGG  59 41
JRI60_RS23905 5900613 .. 5900624 +  -3.6  -3.38768   GGTCTACCAAGTCAA                GGCC GCAT GGTC                 TTGTAAGTGGTGTAA  49 109
JRI60_RS23935 5907087 .. 5907107 +  -2.5  -2.77222   CGCCGTGCGCCTCTG            TCTCGTTCT CAG AGGGTGAGG            GTTTCCCCTCCTCCT  38 7
JRI60_RS23940 NONE
JRI60_RS23945 5911096 .. 5911120 +  -3.6  -3.06796   GTGTGGGGTTGGGAG         TCTCCTCGTGGC CGC GCT-CGAGG-GA         TTCCGTCAGCTCGAG  44 183
JRI60_RS23950 5912542 .. 5912566 + -12.1  -3.86897   ATATACCCTCACCCC          GTCCCTCTCCC AGA GGGAGAGGGGA          TTTGTCCGAAGTGGA  81 166
        mnmA 5913700 .. 5913729 +  -2.7  -3.54129   AGCCGTGCCGCAACG       ATCCCGGCGTGACG CTT CG-CACGCCCTGAA       TTTGACCGACCTGTA  49 40
JRI60_RS23960 NONE
        manA 5916492 .. 5916512 + -10.4  -3.80174   GGGCGGATGGGCTCC           GG-GGCCGG CTGC CCGGCCTCC            TTCTTCTCCACCTCT  73 525
JRI60_RS23975 NONE
JRI60_RS23980 5917847 .. 5917860 +  -5.2  -2.52543   GATCGGTTGCCGCTC               GGGG CTCCAC CCCC                TAACTTCCCGGCGGT  44 9
JRI60_RS23985 NONE
        lepA NONE
        lepB NONE
JRI60_RS24000 NONE
JRI60_RS24005 NONE
JRI60_RS24010 NONE
        carA NONE
JRI60_RS24020 5926658 .. 5926677 +    -5  -2.62263   CGGCTACTTCCACCT            CGAG-GGCA AGC TGCTGCTCG            TCGTCTACGCCGAGT  42 146
JRI60_RS24025 NONE
JRI60_RS24030 5928788 .. 5928814 +  -9.5  -4.19238   CCAGCGGCGGCACTC         TTCACTGGGCT ACGTC AGTCCAGTGGA         TTTTGAGCTTGCGGC  80 397
JRI60_RS24040 5930354 .. 5930371 +  -4.1  -3.85092   ATGGCGGCTCCTCCT             GGC-GATG TCC CGTCAGCC             TTTCCTCTGCGTCCT  57 419
JRI60_RS24065 5940365 .. 5940382 +  -3.4   -2.8547   GCAGGTCCACTCCCA             CC-CGGA CCTCC TCCGCGG             TCTCCTCTCCCCGGT  42 197
JRI60_RS24080 5942768 .. 5942803 + -12.5  -3.23296   CAGGATGCGTTGGAC    GAGCCGGTCGGCGTG CTTCAT CTCGCCGATCGACTC     TTCGTAGATCTTCTT  67 376
JRI60_RS24095 NONE
JRI60_RS24100 NONE
JRI60_RS24105 5950274 .. 5950291 +  -6.9  -3.14931   TCCGTCTCCTGACCC             CCAACGG CGCC CCGGTGG              TTGCTACGCGCTGAA  52 29
JRI60_RS24120 5956328 .. 5956348 +  -7.6   -2.5547   CTGACCATCGGAGGA            GGTGGCAT ACCAG ATGCCATC            ATTCATATAGCCGGT  48 249
JRI60_RS24140 NONE
JRI60_RS24145 5962803 .. 5962827 +  -6.3  -3.45032   CGACGACTGCTTGCC          CAGCTCCGGCG ACC TGCCGGAAGTG          TTGTAGATCTTGTTC  56 474
JRI60_RS24155 NONE
JRI60_RS24185 5973776 .. 5973789 +  -2.3  -2.62983   CGTGTAGGTGGCGGA               GCGCA GGAA TGCGA                TCATGTCGAAGTCCG  38 227
JRI60_RS24195 NONE
JRI60_RS24200 5978597 .. 5978614 +  -4.1   -3.2794   GGGATGGCTCCCAGC             CCACG CAGGTAGT CGTGG              TTCCTCTCCCTGGCG  47 428
JRI60_RS24210 5980305 .. 5980315 +  -3.2  -3.06261   GCGGCGTCCCGGAAG                 GGTT GTA GACC                 TCTTGGACATTGGCG  43 406
JRI60_RS24225 5987698 .. 5987717 +   -10  -3.59979   AGGACGAAGTTGCCA            TCGGTCTG CATC CAGGCCGA             TTTCCCCTGCGAGCC  67 237
JRI60_RS24235 NONE
JRI60_RS24240 NONE
JRI60_RS24245 5990368 .. 5990386 +  -8.1  -2.73875   CAGGAGGAGGGTCTG            GCCG-CGC AGCA GCGACGGC             TCCTGTTCCCCGCGG  49 357
JRI60_RS24255 5992085 .. 5992127 + -10.5  -3.53012   CCTCCCTGAGGGCCA GCGCCAGTTACTGGGGCGGC TCCT GACGCTCGAG-AACGGGCGC TTTCGCGAGCCGGCC  67 32
JRI60_RS24265 NONE
JRI60_RS24270 5994415 .. 5994435 +  -4.6  -2.94099   AGCTATGTTGGACAG            GCGCTCGG CCATA TCGACCGC            TATCTGCTCACGCCA  44 43
JRI60_RS24275 5995333 .. 5995351 +  -5.8  -3.34398   CCCACGTCCCGGGCA             GCAGGCCG GAC CGGCCCCC             TCTTTCAGACGAGAA  51 261
JRI60_RS24280 5996829 .. 5996870 + -20.1  -2.70932   CCGGCCCGCACGCGT CCGGGTGCGTCGCGCTCGTC GCG GGCGAGCGGGCCGC-CCCGG TAGTTGAGCCCGAGC  86 503
JRI60_RS24290 5999186 .. 5999196 +  -3.2  -3.28712   GCACTGGCCCGGCGG                 TGTG TTG CACG                 TTCTGGGCGAGCCAG  47 459
JRI60_RS24330 6009573 .. 6009583 +  -2.4  -3.63515   GCTCCACCGCGATCT                 CCAG CAA CGGG                 TTCTTGCCCGTCACG  51 436
JRI60_RS24375 NONE
        menD NONE
        menH NONE
JRI60_RS24390 NONE
        menC NONE
        menE 6025179 .. 6025218 +  -6.4  -3.14564   GACGCGGTTGAGCTG  GAGGGT-GGCGAGCTCG CTGCCGA CGAGCTCGGCGATCCGC  TTCATGCCCGCCTGC  51 143
JRI60_RS24410 NONE
JRI60_RS24415 6027178 .. 6027197 +  -7.8  -3.93262   GCGCGAGACATGGCA            TCCGCGAGC GTG GC-CGCGGG            TTTGGTGTCTTCGCC  68 41
JRI60_RS24420 6027863 .. 6027921 +  -6.7  -3.75024   TCACCTGGCGGTAGC GCTCCGGG-CGCT-AGGCGGTGAGGGC CTTCTGC GTCTTCACCGTCACGGCGACCTGGACC TTGTTGGTGGTCCGC  61 27
JRI60_RS24430 NONE
JRI60_RS24435 6030512 .. 6030522 +  -2.4  -3.02144   CGAACATCCTTGACG                 CGGG GGG CCAG                 TGTTGCAAAGCATCC  41 85
         icd NONE
         mdh 6032924 .. 6032957 +  -8.2  -2.84801   TGAGCGGGGCTGATG    CCGGAGATGGAGTGGG CTTA TCC-CTCCG-CTCCGG     TAATCTTTGCGGCTC  54 100
        sdhA NONE
        sdhB 6035857 .. 6035901 + -19.4  -3.11366   TTCACCGCTGTTGCA CGAGGCCCCGTGTCCGGCCG TTTTCCT CGG-CGGGC-CGGGGCCTCG GTTCTTTTCCGGTCC 100 61
        sucC NONE
        sucD NONE
         ndk 6038638 .. 6038684 +   -26  -4.56597   GGGCAACACGCCCAC GAC-ACGGCCCGGCTCCCGCG TTTCCT CGCGGGAACCGGGCCGTTGTC TTTTTCGAAAGACAC 100 47
        sbnB NONE
JRI60_RS24480 6041659 .. 6041685 +  -8.7  -2.52896   AGCGAGGAGGCGCGT        GTCTCGACCTGG ATGC CCAGGCCG-GAC         TCGCTTCCGGACTCG  50 143
JRI60_RS24490 6042900 .. 6042913 +  -3.7  -4.63218   AAGCCGGACTCCAGA               GAGCC CTGG GGCGC                TTTTCTTGGCAAGGC  73 259
JRI60_RS24495 NONE
JRI60_RS24500 NONE
JRI60_RS24510 6045755 .. 6045806 + -13.6  -3.13164   ATCCTGTGGTCCAAC CCTGCCTCATGTAGGCCGGGGAGG GCAA TTTCCCCGGCCTACCTGCTACGGG TTGGCTACTTCACAG  72 92
JRI60_RS24525 6047899 .. 6047916 +  -7.7  -3.65314   CGTGCTTCCACGGGG             GCCG-GGA ACA TCCTCGGC             TTCTTGCGGATTCCC  63 61
JRI60_RS24590 6064568 .. 6064584 +  -4.3  -3.30124   GCTCCAGGCTGCTCA              GCTCGGT GAA GCCCAGC              TTCTCGCAAATGGGG  49 61
JRI60_RS24605 6069571 .. 6069581 +  -8.2  -3.61398   CGCCTCGGGTACTCC                 GGGC TCA GCCC                 TTCTTCGCCGGACGG  62 502
JRI60_RS24650 6121276 .. 6121290 +  -4.2  -2.62616   GCCACTGCGCTAGAA               CCATGG CCA CCATCG               TCGTCTCGCCGATCG  40 28
JRI60_RS24655 6122638 .. 6122653 + -10.4  -3.28712   CGGGGCGCTCGGCCT              GACCGG CTCT CCGGTC               TTCTCCCGGAGGAGC  63 24
        sbnA 6124837 .. 6124878 +  -2.2  -2.78996   TGGTGCTCGCGGCTC GAGCAGTAGACTGTCTCCC AGCGG GGGAGG-GGACGAGTGCTC CTTTGACTCCACGTC  38 17
        rlmN NONE
JRI60_RS24675 6126435 .. 6126451 +  -2.1  -3.05463   GCGCCGCCGCCGCCG              CCACGCC CAA GGCCTAG              TTCCCTCGCAGGGCT  41 9
JRI60_RS24680 NONE
        rimM NONE
        trmD 6128021 .. 6128044 +  -2.2  -3.01422   CTGCTGGCGAAGAAA          GAGGAGGAGC TGTA GCCCCTCCGA           TGGTTTCTGGGCCTA  41 11
        rplS 6128610 .. 6128637 + -17.8  -5.14965   CCGGTTTCTCGAAAA        GGGAGTGTCCTC TTAC GAGGGCACTCCC         TTTTTTCATGCCCGT 100 63
JRI60_RS24700 NONE
JRI60_RS24705 NONE
        rsmI 6131953 .. 6131985 +  -2.6  -2.94912   AGGAACCAGGTTGGA      CCCTCTCCCTCT GGGAGAGGG ACGGGGTGAGGG      TATATCGGTTCCCGG  41 90
        murJ 6139634 .. 6139665 +  -7.2  -3.90112   TGCGCCGCCTTTTTC      CCCAGC-CGGGGGCA TGG TGTCCCAGCGCTGGA      TTTCGTTCAGGAAGG  66 358
JRI60_RS24745 6141766 .. 6141805 + -15.8  -3.05463   TGGGCAAGTAGTGCG  CGCACGGGAGGCGCG GGAATGAAGAA CGCGCCTCCCG-GCG  TTCGATGAAAACAGT  77 30
JRI60_RS24750 6141945 .. 6141982 + -12.8  -3.38046   CCGCAACTCGACAGG   CCAGAGACCCTGCC GGAAATGATA GACAGGGTCTCTGG    TGTTTGACATAGAGC  73 34
JRI60_RS24755 6142096 .. 6142122 + -17.3  -4.05446   CAACTCGTGGATGAG         GCCCCGCTGGT GGAGA GCCAGCGGGGC         TTTATCGTTGCAAGG 100 37
JRI60_RS24760 6142248 .. 6142288 +   -22  -3.55444   CCCCCGCAACTCTGT  GGATGAAGCCCCGCTGAC GCTGA GTCAGCGGGGCTTCGTCG  TTTCCGGGCTCGCGG 100 31
JRI60_RS24770 6144014 .. 6144036 +  -3.3  -3.64703   CGCTGACGCACCGGT           GAGTCCCCT ACACC ACGGGCCTC           TTTCCCTCCGCCAGC  53 24
JRI60_RS24780 6146071 .. 6146084 +  -3.7  -3.13899   CATTTGACTCTCAGT               GCCGC GCCG GGGGC                TGTTCGTGGGGGGTT  45 48
JRI60_RS24785 NONE
JRI60_RS24790 6154287 .. 6154300 +  -3.7  -3.30124   CAAAGCGCTCGAAGT               CGAGC AACT GCCCG                TTCTCCAAGATGAAA  47 267
JRI60_RS24805 6156650 .. 6156667 +  -2.5  -3.29471   CCGTGCGTCCCCGAG             CGCTCCC TGGC GGGCCCG              TTCATCTCATGCCCC  44 88
JRI60_RS24810 6157903 .. 6157918 +  -2.4  -2.66316   CCCCGAGCGCTCCCT              GGCGGG CCCG CTCACC               TCGTGTCGTGCCCCC  38 96
JRI60_RS24815 NONE
JRI60_RS24820 6159405 .. 6159425 + -11.1  -4.13767   TCTCTGGGAACAGCA            CGCAGGGTC TGA GAACCTGCG            TTTTCCAGTGAAACC  81 69
JRI60_RS24825 6161723 .. 6161743 + -11.1  -3.21099   GCCCAGCCGCGCCCG            GCCCTGCTC GCG GGGTAGGGC            TTCCTAGTCCCAGGA  64 8
JRI60_RS24845 6167105 .. 6167135 + -14.7  -3.14683   TGAGGGAGTAGGGGA       GTCCGGGCTCGCC CGTTC GTCGAGTCCGGAC       TTCCTCCCGGGCTAT  76 38
JRI60_RS24850 6169299 .. 6169313 +  -5.6  -3.66874   TTCGCTTCCCTCACC               CGCCCA CTG TAGGCG               TTTGAATGCCCTTGC  57 349
JRI60_RS24900 NONE
JRI60_RS24905 NONE
JRI60_RS24910 6195945 .. 6195983 +    -5   -3.1247   GACTAGTTACGTGAA   GGGCAGCTCGAGGGTGGC CGT GGCGCCCTTGCCCGGTCC   TTCGCTCTCCAGGGT  47 35
JRI60_RS24920 6205742 .. 6205763 +  -7.2   -4.4078   TTCGCTTCGCTCAGG           GTGGCCGG TCAGGC CTGGCCGC            TTTTCATTCAACGCA  75 139
JRI60_RS24925 6206753 .. 6206784 +  -6.4  -2.75064   CGGGTCGGTGAACCG      TCGTGGGCTGAGCG AAGG CGCACAGGCCATGC       TCGTTCCCTCCACCG  46 330
JRI60_RS24935 NONE
JRI60_RS24940 NONE
JRI60_RS24945 6213277 .. 6213290 +  -4.5  -3.61398   GGAAGTAGCACACCG               GC-CGG CTG CCGAGC               TTGTTGCCACCCGCA  52 173
JRI60_RS24955 6215384 .. 6215417 + -11.8  -4.15565   TCGGCTTTGAGTGCG     CTG-GAGGAGCCAGC GCTCG GCTGGCTCCTCGCAC     TTTTGAAGTCGTCGC  82 57
JRI60_RS24965 6217866 .. 6217903 + -10.6  -2.71731   CGCACGCCGCCTGAG   CGCCTCCCATGAGA-CG AAACC CGATCTCCTGGGAAGCG   TGGTTGCCCCCTGAC  60 27
JRI60_RS24985 NONE
        uvsE 6224223 .. 6224235 +  -4.1  -3.34398   CCGTGAACACCCCGT                CACTT TAG AGGTG                TGTTTCACGCGGGCG  47 88
JRI60_RS24995 6226248 .. 6226293 + -16.9   -4.2558   GACCCCGCCTAGATT TCCGCCTGCCCG-GCCGGGCT TCATCC GGCCAGGCTCGGGC-GGCGGA TTTTCGTGGCCCGTC 100 66
JRI60_RS25000 6226564 .. 6226589 + -11.8   -4.2349   AGGTTGTTCCAAAAA         GGGTCCGGCC CTCGGT GGTCGGGCCC          TTTTCCATGTCCGGA  91 57
JRI60_RS25005 6229165 .. 6229183 +  -4.5  -3.50853   GAAGATGACGCCGGA            GGGCAGCT TGGT GGC-GCCC             TTCTCCTTGGCGGCG  51 471
JRI60_RS25015 6230018 .. 6230030 +  -7.7  -3.53091   AGCTCGGAAGGACAC                TGAGC CGC GCTCA                TTTGGAGGGCGGGCT  60 23
JRI60_RS25020 NONE
JRI60_RS25025 6231301 .. 6231319 +  -2.2  -3.29043   CCGATGGAGCCGGAG             CGCGGCGG CAC CCCCTGAG             TTGTGGGACGCGCTT  44 8
JRI60_RS25030 NONE
JRI60_RS25035 6233458 .. 6233470 + -10.5  -3.06696   GTTTCCTTGACAGCT                GCGGG GCG CCCGC                TGTATTCCCCGCCCG  60 56
JRI60_RS25040 6233607 .. 6233644 + -12.8  -4.59109   AGCACAGCGGTTCAC  CA-GCGGGCGGCAAGGCT GATC AGCCT-GCCGCCCGCGTC   TTTTTCCGAGGTCTC 100 42
        thrS 6235589 .. 6235647 +  -3.7  -3.08639   AAGCCGCCTGGCCGT CGTGATA-TCACTGGGAGTCACGGGCCT CTGA GGGCTCTTGACTCCCTGAGGCTGGCAAG TATCTTGCCCCTCTT  45 21
        infC 6236481 .. 6236494 +  -4.5  -3.21099   ACACGCTGACGGCGA               TTCGC TGCG GCGGA                TTGGTAGTGAAGGAA  47 81
        rpmI NONE
        rplT 6237256 .. 6237277 + -15.1  -5.75342   TCGCGGGTTGGAAAC           GGGCTGCCC CTGT GGGCGGCCC            TTTTTTTTGCCCCGG 100 111
        pheS NONE
JRI60_RS25070 NONE
JRI60_RS25075 NONE
JRI60_RS25080 6241525 .. 6241559 + -11.5  -3.98159   CCCCGACCATCGAAA    GCCCTGGAGTTTCACT TCAC GGTGGG-CTCCAGGGC     TTTCATCTTCTCCTC  81 32
JRI60_RS25085 6241670 .. 6241722 +  -8.4   -4.4648   CGTACTCCTCGCCAA CAAGAAGGGCCTGGAATC-GAGAGG GAAA CCTCAAAGATTCCAGGCCCTTCGCC TTTTCTCATCCACCT  81 27
JRI60_RS25090 6244200 .. 6244235 +   -11  -3.71848   GGCAGCATGGGCACG    CGGCGCTCGCCGGGGCC GTT GGGCGTGGCG-GCGCTG    TTGTTCGTCACCCGC  69 449
JRI60_RS25110 6248697 .. 6248727 +  -4.5  -3.05384   GACGTCCGCCCGCGT       CGCCCCCGTCTGC AGCGC GTTGACGTAGGCG       TTCAGTCCCGACGCA  45 116
JRI60_RS25125 6252206 .. 6252234 +  -5.2  -3.68302   TGAACTCCTCCACGT       CCACCACGGGGGG GAGC TCTCCCG-GGTCG        TTCTTGAGGTGTTGG  57 422
JRI60_RS25145 6257345 .. 6257379 +    -4  -5.02074   CGTTCTCACCGGAAG     CCGTCGGCGGCGGG TTCGATT CCCGCCGCCTCCAC     TTTTTTACGCCGTGC  81 93
JRI60_RS25160 6261808 .. 6261824 + -11.5   -4.3208   CCCCCCGTCTCCCGC              TGCGCCG CGA CGGCGCG              TTTTGACTTGTCGGG 100 145
JRI60_RS25165 6263008 .. 6263025 +  -6.2  -2.89564   GGTCCAGCCGACGTG             CCGCGT GCCCGA GCGCGG              TATATCCGGTCAGCC  48 360
JRI60_RS25205 NONE
JRI60_RS25210 NONE
JRI60_RS25215 6276982 .. 6277012 + -25.5  -3.45571   CGACATGCCTGTAAA       GGGCCCGGAGCCG CGAGT CGGCTCCGGGCCC       TTCGTCTTTCCAGCC 100 63
JRI60_RS25220 6278290 .. 6278321 + -17.4  -4.13014   CTAGGGTAGGTGGTT      GGGAAACGGGAGCG GCGA CGCTCCCGTTTTTC       TTTTCCGCGTGTGCC 100 47
JRI60_RS25225 6279063 .. 6279098 +  -8.2  -3.28712   AGCTCGCGGCCCGAG    GGGCTCACCGCCTGG ACGAGCA CCTGGCGGA-AGCCC    TTCTCCAGCCCGAGC  58 147
        tesB NONE
JRI60_RS25240 6281047 .. 6281067 + -12.7  -3.86835   TTTCAGGTAGGCCCA            TGTAGGCAT ATC ATGCCTACA            TTTCCTGATATTTAC  81 155
JRI60_RS25260 NONE
JRI60_RS25265 NONE
JRI60_RS25270 6287799 .. 6287821 +  -8.5  -3.53091   CCGAAAAAACGAATC           CGGTCATAT TCTCC ATATGGCCG           TTTCCACCAAACCGT  62 58
JRI60_RS25275 NONE
JRI60_RS25280 6289192 .. 6289210 +  -6.7  -2.64616   GTCGCTCGCGCGGAG            GGCG-GCA TGAA TGCGCGCC             TGCTGTGGCTCGACA  47 16
JRI60_RS25285 NONE
JRI60_RS25290 6290833 .. 6290871 +  -4.5  -3.40403   TTCAGCACCTGCTCC  GTGGCTCCGGCCGAGGTGG GGT CCACACCGTCC--AGCCAC  TTGTCATAGGCCAGC  49 96
JRI60_RS25315 NONE
JRI60_RS25320 NONE
JRI60_RS25325 6301138 .. 6301148 +  -2.4  -3.30159   GAGCGATGCTCACCC                 CCCG TCC CGGA                 TTCTGGGGGAGTTAA  44 56
JRI60_RS25330 6302010 .. 6302047 +  -8.2  -3.12351   ACACCATGGCCCCCG   TCCCGCTGCCGCCGCC CACCCT GGCCCCGGCCGCCGGA    TTGGATCTGCCGCCC  56 357
JRI60_RS25335 6303383 .. 6303433 + -14.7  -2.52635   CTCCCCACCTCCTGA GCCTCGGAGGTGGAGCGCCGCCAT CCTC GTGGCGGCGCT-CACTGTCGGCGC GTTCCTCGTCCGGCT  71 26
JRI60_RS25340 NONE
JRI60_RS25345 6306126 .. 6306138 +  -4.7  -3.66018   GCCGTCATAGGGGCA                GGGCG TGT CGCCG                TTGTTGCAGTACTCG  55 458
JRI60_RS25370 NONE
JRI60_RS25375 NONE
JRI60_RS25380 6313396 .. 6313416 +  -6.7  -2.52464   GCGCCGGGGAGAGTA            GGGGAGGCA CGG TGGCGCCCC            TGGGTTCGGGACCAA  47 25
JRI60_RS25390 6315808 .. 6315851 +  -2.8  -2.90392   CGACGGCAGGACTCC CCGTGCGGGGCCGTCCCCCC TGTA GGGTTGGTCGTCCCGCACCC TATCCTTCAGGACTG  41 1
JRI60_RS25395 NONE
JRI60_RS25400 6318930 .. 6318941 +  -5.8  -3.17212   TCCAGGTCTCGAGCC                GCGA ACAG TCGC                 TTCGTGCCCTGCTGC  49 492
JRI60_RS25405 NONE
JRI60_RS25410 NONE
JRI60_RS25415 6321146 .. 6321157 +  -7.2  -3.27022   GACCGAGACGCAACG                CCGG AACG CCGG                 TTCCTCTCGGCTGGC  54 52
JRI60_RS25420 6321770 .. 6321782 +  -3.4  -3.60296   CTGCCTTGATGGGAC                GTTC CCCTT GAAC                TTTCGAGTCGAGGTG  49 15
JRI60_RS25430 6324722 .. 6324759 + -11.4  -3.29144   CCAGCCTTCGCCCGA   GCGTCGATGTGGCCG CATCGAACC CGGCCGCATCGA-GC   TTGTCGGCCCGGTAG  67 221
JRI60_RS25440 6326843 .. 6326871 +  -2.2  -3.57263   TCGTTGATGCCCAGG        CGGATGTAGCGC TGCAC GCGCTCCCACTG        TTTCGCGCTCACCAT  48 495
JRI60_RS25450 6328898 .. 6328910 + -10.5  -2.52464   AGCAGGTGTTGGGGA                GGGGC CGT GCCCC                TGGATTCGAGACCCA  56 49
JRI60_RS25460 6336695 .. 6336706 +  -4.4  -2.94258   GCTGAACATGACATC                GAGA ATCC TCTC                 TCTGCTTGCATTGCT  44 127
JRI60_RS25465 6337360 .. 6337379 +  -3.6  -3.34233   GACGGACCTCGACGG            GTGCTC-CT TCG AGTGAGTAC            TTGTCAGCGTTCTCC  47 309
JRI60_RS25480 NONE
JRI60_RS25485 6343213 .. 6343244 +  -2.2  -2.50016   CTGCTGGACGGAGGT      GCACCGTGAAGACCG CGC TGATCATCATGG-GC      GTGTTGCTGCTGGGA  37 17
JRI60_RS25490 6343745 .. 6343755 +  -5.4  -3.08046   GAGCGGCGGCAGGCT                 GGAT TAC ATCC                 CTTTTGCGGTCAGCG  49 46
JRI60_RS25510 6346809 .. 6346820 +  -7.2  -3.01712   CGGGATACTGTTCGA                GCGC GCCC GCGC                 TCTTCACGCCGAGGG  52 496
JRI60_RS25545 6353520 .. 6353534 +    -7  -2.80816   GGGTGCCGGGTCATT               GCCCTC CAA GCGGGC               TCTCCTGGCTGGACG  50 41
JRI60_RS25555 NONE
JRI60_RS25560 6358490 .. 6358515 +  -4.7  -3.48684   GGTTGCACAGCATGG         CGAACTG-GGTC TTG GACTTCAGATCG         TTGTAGTAGTTCTGG  51 197
JRI60_RS25575 6364733 .. 6364760 +   -12  -2.64243   GTCCCAGGTGCCGTT        GGTGCTGGCGGT GTCG ATCGCCAGCAGC         TCCTCTCCGATCTGG  59 174
JRI60_RS25610 NONE
JRI60_RS25615 6375009 .. 6375052 +  -3.8  -4.15044   CCGCCTCGCGACCCT CGCGCTCCGTCATTC-CCT CCACTCC AGGAGTATGAGGGGGCGCC TTTGTTCCGCGAGGC  61 51
JRI60_RS25620 NONE
JRI60_RS25625 6377847 .. 6377878 + -12.8  -2.52464   GGCGCGTTGAATGAA      AAGGGGCCCGGGCC GTGT GGCCCGGACCCCCA       TGACTTCAGAGCGGA  63 43
JRI60_RS25640 6382038 .. 6382064 + -10.9  -2.57132   TAGTCTTCGGAGTCA        CCGTGGAAGCGG GGTG CCGCTTC-GCGG         GTTCTGACCACGAAG  59 38
JRI60_RS25645 6382720 .. 6382756 +  -4.4  -3.05596   CGCGGGCACGGTGAG    CACCGCCGTGTAGT AGCCCATGA ACTGCACGCCCGTG    TTGAATCCGAGGGTG  45 54
JRI60_RS25660 6386902 .. 6386918 +  -5.7  -3.72324   AGATCGCCTCGCGCC              ACTGGGC CAT GCCCGGC              TTCTTGGTGACGATG  57 169
JRI60_RS25670 6389664 .. 6389696 + -10.5  -3.54414   GGTTGCACGCGTTCG      CACCCCGTCTGTCAG CTA TTGACGGACGGTGGG      TATTTGATTACAAAT  67 57
JRI60_RS25675 6392130 .. 6392145 +  -6.8  -2.90075   AGCGGCGGGCTCATC              CG-GCCG TAA CGGCACG              TGTCCTTCCCCCGGG  50 17
JRI60_RS25680 NONE
JRI60_RS25685 6394222 .. 6394249 +  -6.2   -3.7511   GTTCGCCGAGGCCCC        GAGGCTCGAAGCC GGG GGCT-CGTGGCTC        TTGTCTTGTAGGGCA  59 60
JRI60_RS25690 NONE
JRI60_RS25695 NONE
JRI60_RS25700 6397436 .. 6397449 +  -6.7  -3.05816   GACTGGTTAATCAGC               CGCTT CCGA AAGCG                TTGACTCCGGAGTGC  51 95
JRI60_RS25705 6398583 .. 6398625 + -14.9  -2.56715   GTGAGCCTCCTGGGC GCGACGAACGCCCGCGGGG AGGAGTG CCCCGCGGGCGC-CGT-GC TCACTTCGTGAGGAT  71 37
JRI60_RS25720 6403503 .. 6403525 + -14.9  -3.33261   GATACGCCGCGAGGA           TGAGCGGGG AGAAG CCCCGCTCA           TTCTGGACGTTCACG  75 380
JRI60_RS25735 NONE
JRI60_RS25740 NONE
JRI60_RS25745 6406953 .. 6406994 + -11.4  -3.14881   CGGGTCTGACGCGGA GAGCCCCGCCCGGGGG CCGCGCGGTC CCCCCGGGCGAGGCCA  TTCATCAAAGCATTC  66 32
JRI60_RS25750 6408303 .. 6408328 +  -3.9  -3.02511   CCGGAGAACGCGGAC         GGTGCATCGCGC CTC GCGCG-TGCAAA         TGTTCCCGGCATGAA  44 81
JRI60_RS25755 6409762 .. 6409784 +    -9  -3.63276   CGTGCATCAGCCGCC           ACGCGCGGTG CAC CACCTCGCGG           TTCTCCTTCTTCTGG  64 441
JRI60_RS25790 6416844 .. 6416874 +    -9  -2.65815   ATCTCGTCGACTATG      CGCTCGGTGCCCA CCGTCC TGGACACCG-GCG       TCATCTCGATGTCCG  50 321
JRI60_RS25800 6419735 .. 6419765 +  -3.8  -3.64822   GGCTCCGAGGCTCCC       GCGGGCCTCGAG GGGCTGG CACGGGTCCTGC       TTTGGGTCAGGGCAT  54 136
JRI60_RS25805 6420719 .. 6420757 +  -2.3  -2.59431   TAACGGTACGCTGCC  CGCGTAGGACTGACTGGCG CCT CGCCAA-CGG-CCTTCGAG  TGGGTTATGGGCGCG  38 19
JRI60_RS25810 NONE
JRI60_RS25815 6422379 .. 6422399 + -15.5  -3.62597   CGCGTGCCGGACGAA            CTGGTCCGA TGG TCGGACCAG            TTGTTCCCGAGTGCG  85 68
JRI60_RS25825 6427811 .. 6427829 +  -5.9  -2.70932   CCGTTTGACGCAGTT             GGCCGAG ATGAC CTCGGAC             TGCTTGGGCGACACC  44 404
JRI60_RS25835 6428771 .. 6428805 +  -9.3  -2.57795   GCGTGAGCATCTCCG    CT-CGCGTGCCCA-GCG CAC CGCCTGAGCGCGCGAAG    TCGCTTCGTGGTCAC  54 1
JRI60_RS25850 6431332 .. 6431375 +  -3.7  -3.33696   GGCTCCTCCGAACCG TCTCGAAACC-TGGACCGTG AAGAA CACGGACCCTGGCCTCGGGA TTGCTTCGCCAGGGG  47 6
JRI60_RS25855 NONE
JRI60_RS25860 6434846 .. 6434883 + -19.8  -3.05463   TAAGCTCCCGCCCGT   CGTCCCCGCGGCACCG CGCGCA CGGTGCCGCGGGTCCG    TTCCCTACCGGCGCT 100 38
JRI60_RS25875 6437557 .. 6437572 +  -6.8  -2.50994   GTTTGTCATTGAGCA              CAGGCT ATGC GGCCTG               CTTCCTCCGGTTGCG  47 55
JRI60_RS25885 NONE
JRI60_RS25890 NONE
JRI60_RS25895 6446038 .. 6446051 +  -3.7  -3.28712   AGCCGCCCATGCCCT               CCCGC CAGC GCGCG                TTCTCCACCACGCGC  47 386
JRI60_RS25935 6455210 .. 6455236 +  -3.6  -3.60792   CTCGTCTCCTCGGGC         GGGATATCGGGT CCG GCCATGTATCCC         TTCTGTGTGCATGGT  51 477
JRI60_RS25950 6458177 .. 6458194 +  -9.8  -3.14564   ACCGTCAACGGCGTG             CGGCCG ATCACC CGGCCG              TTGATGGACACCTCC  59 373
JRI60_RS25965 6461405 .. 6461455 +  -7.5  -3.73224   TCACCCTTGGAAGGG CGGGGAGGGGCC-GCGCTCGGAGTG TGC CA-TCCGGGCCCAGGGTCCTCATCG TTTCCTCGAGGGTGG  63 90
JRI60_RS25970 6465700 .. 6465747 +  -4.6  -3.47573   ATGGAACCACTCTGA GGTGTGAGCCGCCGCGGTG-GCG GGG CGCGCGCCTCGGGTGCTCGAGTC TTGTCCTGTGACTCG  51 26
JRI60_RS25975 NONE
JRI60_RS25980 NONE
JRI60_RS25985 6472458 .. 6472480 +    -4  -3.63515   GGCCGTCCCAACCCT           GGGGCTCG GTGTGGA TGCGCCCC           TTGTTGCCGATGCCC  55 184
JRI60_RS26015 6480858 .. 6480873 +  -4.6  -3.01712   GCGCCGAGGCTCGAC              AGCTCC CACG GGAGCC               TGTTAGGGAGCGGCG  45 58
JRI60_RS26020 6481804 .. 6481827 +  -3.1  -3.73224   ACTCGGGTCACCAGG          CCGTC-GGTG ATGAA CACCCGACGC          TTTCCTCCCGGGTAC  56 197
JRI60_RS26050 NONE
JRI60_RS26055 6486172 .. 6486193 +  -4.3  -4.15222   CGAGAGGGCCAGGCA           CCCGCTACA TGCC TGGAGCGGA            TTTCTTGCCGGGGGT  62 61
JRI60_RS26060 NONE
JRI60_RS26065 6488743 .. 6488755 +  -6.2  -2.88249   GGGTACCAGTGACAA                CGGG TTGCC CCCG                TGTATGCCCCCTCTC  48 89
JRI60_RS26070 6489664 .. 6489680 +  -5.7  -2.94747   GGCACGCGTTTGGAA              CCCCCGG TGC TCGGGGC              TGTCTCCTAGGCTCG  47 62
JRI60_RS26075 6490924 .. 6490934 +  -8.2  -3.33214   GCGCTCCACCTGCTC                 GCCG AAC CGGC                 TGTTCTCGTTGCCCT  58 425
JRI60_RS26085 NONE
JRI60_RS26090 NONE
JRI60_RS26095 6495736 .. 6495761 +  -3.9  -3.53012   GGCCCTGCGCGCGGG         GTTCGTGGAGCT TTG AGCCCC-CGACC         TTTCGAGCAGGCCAG  51 10
JRI60_RS26100 6497316 .. 6497334 +    -3  -3.36273   CCTTTGGGAGAGGGC             GGGGGTGA GGG TCGTCGCC             TTCGTGTTCCGGGGG  48 93
JRI60_RS26115 6501724 .. 6501747 +  -5.8  -3.73224   CGGCGCTCGCATCGC          CGCGTGAGGG ACCT CCCGGGCGCG           TTTCGTACGAACTGG  57 19
JRI60_RS26125 6507668 .. 6507692 +  -2.8  -2.90075   ATCAGCGCCACTAGC          CCATTGCCGA GCAGG TTGGTGGTGG          TCTCGTTGCCGGCCA  40 492
JRI60_RS26135 NONE
JRI60_RS26140 NONE
JRI60_RS26145 6512266 .. 6512286 + -11.9  -3.35813   CGCGCGCTGCTCGAA            CTGGTCTGA CCA TCGGACCAG            TTGCTTGAACTCGCG  70 319
JRI60_RS26150 6512799 .. 6512835 +  -2.9  -2.87132   AGGGCAGTGGCCCGC   CGAGCGCCTACCTGGC GTCCAG GGCGGG-AGGGGCTTG    TGTCTCGCGGCGCAG  41 48
JRI60_RS26160 NONE
JRI60_RS26165 6514755 .. 6514769 +  -5.7  -2.88544   CTCGTCGAAGTTGGC               CTGCT CGGGA AGCAG               TGTGTCCCCGTGCGG  46 317
JRI60_RS26180 6520558 .. 6520586 + -19.5  -3.01791   GGCCACCGCCACGTC        CGCCCGCCGCGCG TCC CGCGTGGCCGGCG        TCTTCCAGGCGAACT  85 467
JRI60_RS26205 NONE
JRI60_RS26210 NONE
JRI60_RS26215 6527735 .. 6527765 + -13.3  -2.78596   GTCGTACCTCGCACG      GGCACGGGCGGTCC GCCG GGAGC-CCCGTGCC       TGTCGTCACGGCCTC  67 83
JRI60_RS26220 6528729 .. 6528759 +  -9.6  -4.64766   ACGGGTAAGCAGATT       TCCGGTGAGGTGGG ACC CCCTCCTTGACGGA       TTTTTACGCTGTCAC  86 33
JRI60_RS26225 NONE
JRI60_RS26230 6530040 .. 6530064 +  -6.4  -3.84406   TGCGGTTTGCTCACT         CGTTTCGGCGC GCTG GCGCTG-AGCG          TTCTTCTGCTCCAAC  62 91
JRI60_RS26235 NONE
JRI60_RS26240 6531360 .. 6531403 +  -3.7  -2.78384   GCTTCCTCGACTGAG GATTCGGGCTCCCCGCGC GAAAAAGGG GCGCGGCG-GCCCGGAAA TGTCGTAGAAAACCG  41 27
JRI60_RS26245 NONE
         psd NONE
JRI60_RS26255 6534344 .. 6534396 +  -9.1   -3.8594   CGGGAACGCGTCTGG CCGGAAAGAGCCGGAAAACCCTTG AGAATC CAGGGGTTTTCCG-CGCCCCCCGG TTTGGTGTGGGTGTT  71 61
JRI60_RS26260 NONE
JRI60_RS26265 NONE
JRI60_RS26270 NONE
JRI60_RS26275 NONE
JRI60_RS26280 NONE
JRI60_RS26285 6540148 .. 6540163 +  -2.4  -3.89614   CGGCGGAGCGCCATT              CCTCTG GATC CGGCGG               TTTGTACGAGTTGAG  57 476
        miaA NONE
JRI60_RS26315 6547965 .. 6547999 +  -7.7  -3.07113   GGAAGGCCTCGGCAC    CCGCGTCGAGCGCGCG CTGG CGCACGTGCGGC-CGG     TTCAATCCGCTCATC  52 162
JRI60_RS26335 NONE
JRI60_RS26340 6552553 .. 6552583 +  -6.7  -2.74514   TGTCTGGCCGTCTCG       CTGGCGTTCCGCG GGTAG CGCGGGACGCGGA       TCGTTCGAGCTTTGA  48 8
JRI60_RS26345 NONE
JRI60_RS26350 6554452 .. 6554480 +    -3  -2.73771   CGCCGCTTTTGACGG        ACGGCAGCCACT CCCCA GGTGGTTGCAGG        GTTTCGGGGCTATAG  40 46
JRI60_RS26355 6554571 .. 6554599 + -20.4  -2.61695   CCACAGTCGAAAAAA        GAGGCCCGTCAG GATTG CTGACGGGCCTC        GTCTTTCACCCTCGA  95 36
JRI60_RS26360 6554707 .. 6554747 + -22.2  -4.07568   CGGTTAGCTCCACAA TGAAGAAGGCCCGTCAGGT TCAC ACCTGACGGGCCTT-TTCA  TTTTCGAAGGAAAGC 100 27
JRI60_RS26375 6559090 .. 6559105 +  -2.4  -2.89055   GCCGTGAATAACTCC              GGGCCG CGGG CTGTCC               TCTCTCCCAACTTTC  40 34
JRI60_RS26380 6560151 .. 6560187 +  -9.4  -3.29144   GCGCGCCAGGTGATC    GAACTCGTGCTCCGTC ATCGG GACGAAGCCCCAGTTC    TTCTCCCAGGCCTGG  61 464
JRI60_RS26395 NONE
JRI60_RS26400 6566313 .. 6566365 +  -2.2  -3.01712   ACGCGCCCGGTGCGA ATGGAC-GCT-AT-CGTACGC-CCCT GAACA AGGGAGCGTACGCATGAGCAGGCCAA TCTTCGCGGGCCGGG  41 2
JRI60_RS26405 NONE
JRI60_RS26410 6569595 .. 6569627 +  -3.4  -3.02511   TCCACCGTGTATGTC      CCCTCTCCCT CTGGGAGAGGGCT AGGGTGAGGG      TCTTCCCACCGTGAG  42 105
JRI60_RS26415 NONE
JRI60_RS26420 NONE
JRI60_RS26425 NONE
JRI60_RS26435 6576850 .. 6576869 +  -6.4  -3.15544   CGGGCGCGGGAGACT            GAGCGG ACCCCATG CCGCTC             TTCCTCGCCCTGCCC  51 24
JRI60_RS26440 6578591 .. 6578604 +  -3.8  -3.20078   CTACCTGGGCGAGGA               CTCC TGACCT GGAG                TATTCCTGTGCACTG  45 19
JRI60_RS26445 NONE
JRI60_RS26450 NONE
JRI60_RS26455 6581708 .. 6581728 + -11.9  -3.35813   CGCACTCGGCTCGAA            CTGGTCTGA CTA TCGGACCAG            TTGCTTGAACTCGCG  70 124
JRI60_RS26465 6586057 .. 6586075 +  -4.4  -3.28712   CTGCCCGAAGTTGAG             CTCCACCC GGA GGTTGGTG             TTGTCGGAGGGAGCG  49 500
JRI60_RS26475 NONE
JRI60_RS26480 NONE
JRI60_RS26485 NONE
JRI60_RS26490 NONE
        xylB 6592956 .. 6592972 +  -3.5  -3.16564   CCTTCTCCAGGAGGG              CGCGCGC GTT GGGCTCG              TTGATGGGGTAGCGC  45 214
JRI60_RS26530 6602109 .. 6602129 + -15.5  -3.14132   TGCGCTCCGGACGAA            CTGGTCCGA CTG TCGGACCAG            TTGCTCCCGAGCGCG  78 111
JRI60_RS26535 6603494 .. 6603506 +  -3.3  -3.14132   ATGGTGCTGGATGAA                GTCCA GCG TGGCC                TTGATGGCACCACAG  45 320
JRI60_RS26545 NONE
JRI60_RS26550 6605484 .. 6605501 +  -2.5  -3.64703   GAACGAGCGCTCCTG             AGCGAGG AAGG CCGCGCA              TTTGACTCGCGAGCG  51 25
JRI60_RS26555 6608460 .. 6608472 +  -4.8  -3.27298   GCCTGCCGTTCGAAG                GTGC GGAAG GCAC                TTCGTGCTTCGCGCG  49 313
JRI60_RS26575 6614047 .. 6614057 +  -4.6   -3.2665   GGCCTCCATCGCCTT                 CCGG GCC TCGG                 TCTTCTCGCCTTTGC  47 153
JRI60_RS26595 NONE
JRI60_RS26600 NONE
JRI60_RS26605 6621515 .. 6621532 +    -7  -3.57144   GGTGAGCGGGATCTG             GTGGAC CTCGCC GTCCAC              TTTCAGGGTGACGAC  56 521
JRI60_RS26615 6622430 .. 6622446 +  -2.2  -2.80344   CTACACTCCTCGCAA              GATCGA ATGTC TCGACC              GTTATTCAATGCCAG  38 48
JRI60_RS26620 6625924 .. 6625948 +  -2.7  -2.87132   GGTGTCCGGCGCACG          GGCTGCCGA ACACCAC TCAGCCGCC          TGTGTAGAACGCGGC  41 43
JRI60_RS26625 6626161 .. 6626173 +  -5.5  -2.56164   CGCGGGGAAGGTGCG                CGGTC GCT GACTG                GTTCGTGCTTCAGGG  44 16
JRI60_RS26655 6634160 .. 6634177 +  -4.1  -2.62184   GACGAATCCCCGGGA             GCGACGGT GGA ATCG-CGC             TCCTCTCACGCAGCG  40 39
JRI60_RS26665 6636573 .. 6636592 +    -2  -3.36749   GTTCCAGGAAGCGGA            GGATGTGC GAGA GCACCTGC             TTGATCTTGGGAATC  46 63
JRI60_RS26675 NONE
JRI60_RS26680 6641090 .. 6641104 +  -2.7  -2.62184   AGTCGTGGCGGGGCC               CCGAG GCGTA CACGG               TGATGTCCCGGGCCC  39 67
JRI60_RS26690 6642482 .. 6642502 +  -3.3  -3.24924   ACGAGGTGCACTGAA            CTGGTTG CAAAACA CAATCAG            TCTTGTAAGTAGGAG  46 27
JRI60_RS26695 6643670 .. 6643681 +  -3.6  -2.78018   AATCGGCGATCGGGC                TCGG CTGG CCGG                 TGATTCCTGGCACGT  40 499
JRI60_RS26745 NONE
JRI60_RS26750 6664739 .. 6664759 + -15.5  -3.14132   CGCGCTTCGGACGAA            CTGGTCCGA CTG TCGGACCAG            TTGCTCCCGAGCGCG  78 73
JRI60_RS26760 6668899 .. 6668915 +  -3.5  -3.63744   AGCCCTCCCATGGAA              CGGGCGC TAC GCCGCCG              TCTTTTCACGGGAGG  54 69
JRI60_RS26765 6671080 .. 6671102 +    -4  -2.92157   AGCTCGGTCATCGGT           CTGCCGGAGG GGT TCTCGGGGAG           TGTGTGGAGTTGCTC  44 315
JRI60_RS26775 6672392 .. 6672409 +  -4.1  -2.82516   CCTCCTCGAGGAGCA             TCTTCGC GGAC GTGGAGA              TGTAGTCCTCGGGCG  42 295
JRI60_RS26785 6674680 .. 6674692 +  -3.3  -3.61398   CAGGTCGCTCTTCAC                CGCCA ACT TGGCC                TTCTTCGCGAACAGC  53 507
JRI60_RS26795 NONE
JRI60_RS26800 NONE
JRI60_RS26805 6678563 .. 6678575 +  -5.5  -3.28924   AAGGCGAGTGCGAGT                CTCTC CCA GAGGG                TTCTGCAGGGCGATG  51 52
        meaB NONE
         rnc 6680425 .. 6680442 +  -6.2  -4.07568   GTCGAGGAATAAGGT             CCCGCG CCCATT CGTGGG              TTTTCGACCCGGGAG  66 61
JRI60_RS26820 6681141 .. 6681157 +  -5.1  -4.19817   GGGGCTCCCTGATCA              CCTTCGA CCT TCGAAGC              TTTTAGATGGCTCCA  69 148
         era NONE
         der NONE
JRI60_RS26835 NONE
JRI60_RS26840 NONE
JRI60_RS26845 6686066 .. 6686091 +  -4.7  -2.71364   GGTTGGATCCGCTGG         GCTGATGC-TGC GGC GCACGTTTCAGC         TGATTCCCGGCGTGG  43 21
JRI60_RS26850 6686990 .. 6687007 +    -4  -2.79915   GAGGGGAGAGGTCAA             GCGGGC GTGTCA GCCCGG              TCTGGTAGGGTGACT  41 61
JRI60_RS26855 6688290 .. 6688303 +  -8.1  -5.47159   GTGGAGACCCGGCGT               CAGCG CCGG CGCTG                TTTTTGTTTCTTCGC 100 95
JRI60_RS26915 6697643 .. 6697657 +  -4.9  -3.14564   ACCCTCTCGAAAACG               GGCTC CCAGC GGGCC               TTGGTGGCGCAATAG  47 404
JRI60_RS26955 6704057 .. 6704091 + -20.1  -2.89527   AGAACCCCGAAAAAA     CGAAGGGGCTGCCCG GTTCA TGGGCAGCCCCTTTG     TGCTTCTGGTGTTCG 100 63
JRI60_RS26965 6706804 .. 6706820 +  -9.4  -2.53581   CCGATCATCACCGAG              CTGGCC CCGGC GGCCAG              TGCCTTCACGATGTC  53 455
JRI60_RS26975 6710772 .. 6710791 +  -5.7  -3.29144   GGCCGTCCTTCAGCA            GCTCGAT GCCGTA GTCGAGC             TTGTCGCCGAAGTGG  51 338
JRI60_RS27010 NONE
JRI60_RS27015 NONE
JRI60_RS27020 6718497 .. 6718523 + -10.2  -2.78463   GGTCATCGACGGCGG         GCTGATGCTC CGGGAGT GAGCGTCAGC         TGTCCTCGCCGCGGT  57 7
JRI60_RS27115 6738532 .. 6738552 +  -2.4  -3.74792   CCGAAGGTCCTGAGC            CTCGCGCC AGTCG GGCCGGAG            TTTCAATATCTGGTC  55 69
JRI60_RS27125 6742723 .. 6742752 +  -5.6  -2.79796   ATCCCGAGCAGCAGC       GCTGG-CGCGGCG ATCTC CGCCGCCACCACC       TGTCGTCCCGTGAGC  44 506
JRI60_RS27140 6746260 .. 6746274 +  -5.6  -4.72386   TGCGCACGAGTTGGT               GAGTGG ACC CCACAC               TTTTTCCCTGATTTA  81 24
JRI60_RS27145 NONE
JRI60_RS27150 6748702 .. 6748718 +  -2.9  -2.88366   CAGATGGCCGGAGGG              TTGTCGC TAT GAGACAG              GTTCTTGCTTCCCGG  41 14
JRI60_RS27155 NONE
JRI60_RS27160 NONE
JRI60_RS27165 NONE
JRI60_RS27170 NONE
JRI60_RS27175 6752428 .. 6752455 +  -8.4  -3.36273   CTTGGCCATGGTGTA        GGCCACGTGGTT CTGG AACCACTTGGGC         TTCATGTTGAGCGGC  58 384
JRI60_RS27190 6756386 .. 6756413 +  -4.7   -2.6155   TGGACCTGACGGGGC        TCGTGACCGGC AAGTCG GCCGTGCACGG         ATTCATGTTGGAAGA  42 168
JRI60_RS27195 6758098 .. 6758116 +  -3.7  -3.75169   AGCTCTCCAGCTTCG             CCGCGTC CGCCC GGCCCGG             TTTCATCGCGTCGTC  56 470
         nth 6764418 .. 6764428 +  -6.8  -3.39327   GCCGCTCGCAGTACG                 GGAG GAT CTCC                 TTCTCGATGTCCCGG  53 412
JRI60_RS27230 6766782 .. 6766840 +  -3.8  -2.70932   AGCCCTGGCGCTGAG -TCCCGG-TGACCGTGGCGAGGGC-GCGCA CCA TGCGCCGCAC-CGCCTCGGCCAGCTCGGAC TCCTTGCGCGCGGCG  41 17
JRI60_RS27240 6769379 .. 6769395 +  -2.1  -2.78463   GGCCCGGAAGAAGAA              GCGGCAC TCA GTGAAGC              TGTCGTCCCAGCCAT  39 360
JRI60_RS27250 NONE
JRI60_RS27255 6772342 .. 6772372 +  -4.4  -3.29144   CTCCCCGGGCAGCAT       CCGCGCCGCCAGGG CCT TCAGGGACGCGCGG       TTCTGGGCGGAGTCC  49 144
JRI60_RS27280 6777454 .. 6777464 +  -3.2  -3.01712   AGACGCTGAGTTCAG                 GTTG GGT CGAC                 TGTTGACGCGGAACG  42 57
JRI60_RS27285 6778375 .. 6778388 +  -2.3  -3.67597   GCTCGACCTCCATGC               GCTCG ATGA CCAGC                TTGTTGCCTCGACCC  51 377
JRI60_RS27295 NONE
JRI60_RS27300 6781473 .. 6781489 +  -5.1  -3.55563   ATCCGTTGTCACGGT              CCTCG AACATCC CGAGG              TTTGAGGGCTGGAAT  54 174
JRI60_RS27305 NONE
JRI60_RS27310 6785506 .. 6785540 +  -2.6  -3.32844   CCCGCTGAGCCAGAT     GCTCGGCGAGGCGATC CAG GGTCTCGTTGCCGCCC     TTCTCCACTCCGAAC  44 83
JRI60_RS27330 6788001 .. 6788013 +  -9.1  -2.66316   GGCGTGTTCGAGGAG                TCCCG GGT CGGGA                TGCTATCCTCACCGG  54 64
JRI60_RS27335 NONE
JRI60_RS27340 6793836 .. 6793847 +  -5.8  -3.61398   AAGGTGCTGAGACAG                CTCG CGTA CGAG                 TTGTTCGCGCACCAG  57 263
JRI60_RS27405 6816996 .. 6817018 +  -6.2  -3.36452   CACGACGCCCCCCGT           TCGCGTTCAC AAC GTGACTGCGG           TTAATCTTGGACGCT  55 154
JRI60_RS27410 6818013 .. 6818024 +    -3  -4.84642   ATTGCAATACCAATT                CATA TGCA TATG                 TTTTATTGATTTACG  77 198
JRI60_RS27415 NONE
JRI60_RS27420 NONE
JRI60_RS27425 NONE
JRI60_RS27430 NONE
JRI60_RS27435 NONE
JRI60_RS27440 NONE
JRI60_RS27445 6825445 .. 6825456 +  -2.2  -4.18197   GGCCGTCCTCTTGGA                TCGG GAGT CTGA                 TTTTACGTCAAAGCT  62 188
JRI60_RS27500 NONE
JRI60_RS27505 6837862 .. 6837881 +  -5.6  -3.24747   CGCCGCCGAAGTACG            TGCGGACG AAGA CGTCCACG             TTCATCCTCTGCCCG  51 107
JRI60_RS27530 6843511 .. 6843542 +  -6.5  -3.14132   GATCCGGATCCGGCA      GTTCTCCGGGCGCC AGCTC GG-GCTCGGGGGGC      TTCGTGGGCGGCGGC  51 362
JRI60_RS27570 6855122 .. 6855138 +  -2.1  -3.62046   GGCGCCATCCCGCGA              GGTCCGG CAC CAGGACA              TTCTTCCCGAAATGG  51 370
JRI60_RS27580 6858299 .. 6858309 +  -4.6  -3.12351   GTGATGGACTCGAAG                 CCCT GCC GGGG                 TTCCGTGTACGCACC  45 249
JRI60_RS27625 6866462 .. 6866474 +  -4.7  -3.30124   CACCACGGTGAAGTC                CCGGG AGG CGCGG                TTGTCCACCGTCACC  49 284
JRI60_RS27635 6870516 .. 6870531 +  -4.6  -3.25823   GGAGAGCAGTCGGGC              TCCCAG CGAC CCGGGA               TTCGTCTCGCCGAGG  47 455
JRI60_RS27645 NONE
JRI60_RS27650 NONE
JRI60_RS27655 6873505 .. 6873519 +  -2.8  -3.41978   TCTCACGAGGAAGCG               CATTCA CTC TGAAAG               TTGCTTCGATTCTCC  45 200
JRI60_RS27700 NONE
JRI60_RS27705 NONE
JRI60_RS27710 NONE
JRI60_RS27715 6891546 .. 6891566 +  -8.9  -3.50853   CACGACACCGAACAC            GTGAGGCCT CCC AGGCCGCGC            TTCTCATTGGAGACC  62 22
JRI60_RS27720 6895419 .. 6895435 +  -4.3  -3.61398   CGAGCGAGGTGTCGA              TGCCCTT GAA GGGGGCG              TTGTTGAACCACCCG  55 181
JRI60_RS27755 6905502 .. 6905532 +  -8.8  -3.14564   CTTCTGCACCCGGGT       GGCCAGCCGCGTGG ACT CCTCGGTGTTGGCC       TTGGTGGCCAGGTCC  56 293
JRI60_RS27765 6908029 .. 6908043 +  -9.2   -4.0044   CCCCGGGCGCAGGCG               CGCGCG CAC CGCGTG               TTTCTGGTCCTGCTT  69 165
JRI60_RS27785 6912072 .. 6912111 + -12.1  -3.15861   GGCGGTAGTAGTCAG  CCGCTGGCGGTTGCTGA AGGTCG TCGTCAGCCGCTGGCGG   TTGCTGGAGCTGATA  65 199
JRI60_RS27795 6912980 .. 6913002 +  -8.5  -2.57132   CTTGCACGCACCGGA           CTTGGTGTG TAAAT TACACCAAG           CTTGTCCCGCAGGGG  52 93
JRI60_RS27800 6913610 .. 6913632 +  -7.6  -3.31144   GCTCCCGGGCTCACG           GGCGGGAATG CCC CATCCCCACC           TTCTCGAGCTCGGAC  56 44
JRI60_RS27810 NONE
        nhaA NONE
JRI60_RS27835 6923630 .. 6923644 + -11.4  -3.39288   TGAAAGCGCTTGCAA               CGCGGA GAA TCCGCG               TATTGTTGACGCCTC  70 181
JRI60_RS27840 NONE
JRI60_RS27845 6926374 .. 6926387 +  -3.7  -2.71731   TACGTGTGGCTCGAT               CCCCG GACG CGGGC                TCGTTGACAGGTGGG  41 5
JRI60_RS27850 NONE
JRI60_RS27855 NONE
JRI60_RS27860 NONE
JRI60_RS27865 6931905 .. 6931919 +  -4.9  -3.96148   CTCACGAGGTCAGCT               TCCCG CGAGC CGGGG               TTTCTCCTCCCCACC  61 116
JRI60_RS27885 NONE
JRI60_RS27890 6940377 .. 6940397 +  -3.2  -2.64616   ACGCTGACGGACGAG           GCG-CTCGC ATGA GCGGGATGC            TGGTGTGGCTCGGCC  39 14
JRI60_RS27895 NONE
JRI60_RS27900 6942133 .. 6942146 +  -5.9  -3.29511   GGGGAGTCTCCCTCG               GTGCC GCCG GGCGC                TTCTAGCCGCCTCAC  53 6
JRI60_RS27905 6944563 .. 6944588 +  -3.1  -2.78679   GAACAGCTTCCTGAG         CATCCGGTGAGC CGA GCGC-CCGGGCG         GTTTCGCTCCCCGCG  40 16
JRI60_RS27910 6945390 .. 6945405 +  -2.4  -3.30124   AGGCGCTGCGGGTGT              GAGCGG GATG CTGCGC               TTCTCGGAAGTGGCG  44 24
JRI60_RS27915 NONE
JRI60_RS27920 6947140 .. 6947154 +  -7.8  -3.17685   ACGCGGCGGATTTGA               TGGCGC CTC GCGTCA               TTACCTCTGTCGTTG  54 40
JRI60_RS27925 6948435 .. 6948460 +  -7.5  -3.44051   GCAACCAGCGCATGG         CGAGTGGCAGC CGGC GCTGCCAGTCC          TTCTCGTGGTGGAGC  59 67
JRI60_RS27960 6980166 .. 6980188 +  -3.2  -3.48593   GCTTCGTCTGCTCCA           GCTCTCCCTG CGC CTGGGCGATC           TTCTGTGACACCGTG  50 374
JRI60_RS27980 6983664 .. 6983674 +  -2.4  -2.61264   GGGCAAGCGGATCAT                 CCTC GGA GCGG                 CTTGTGCGTGAGGGG  38 4
JRI60_RS27985 6985303 .. 6985328 +  -5.3  -2.52543   CCGAGGGGAACGTGG         CGCGCGATCGGC CCC GCCC-TCGCTCG         TGCCTTGGCGGGCCT  44 56
JRI60_RS27990 6987614 .. 6987634 +    -6  -3.02511   GGAGCTCCATTGAGA            CGGAGCGG CCATC CCGTACCG            TCTTCACGGGCTCGC  49 28
JRI60_RS28000 6989384 .. 6989399 +  -4.6  -5.13648   TACCGCCGTGGCTCG              GCTCCG GCCG CGTAGC               TTTTGTTTGTGTTTG  86 11
        truD NONE
JRI60_RS28030 NONE
JRI60_RS28035 NONE
JRI60_RS28040 6999512 .. 6999563 + -18.7  -4.07568   GCGGTGAACGAAGGA CCCTCCGGGGGCGGCTGGGAGCGT GGGGG ACGCT-CTGGCCGCCCCCGAGGTG TTTTCACCGGCCAGC 100 51
JRI60_RS28050 7001691 .. 7001704 +  -3.1  -2.78384   GCGCGCGGCCGAGTC               GCTCCT CGG AGG-GC               TGTCATGAGCAAGAC  40 4
JRI60_RS28055 NONE
JRI60_RS28065 7005248 .. 7005279 + -20.2  -3.06515   CGGCCTCGACACACG      GGAACGGCGGCTCC TCAC GGGGCCGCCGTTTC       GTTTTCCCCCTGCCC 100 55
JRI60_RS28070 7005963 .. 7005991 +  -5.3  -2.78384   CGGGCCGCCGCGCCC       CCTGGCCGCC CGGCGAGAGT GGC-GCCAGG        TCTCATCCAGCGAGA  45 60
JRI60_RS28075 7006769 .. 7006796 +  -2.5  -3.17051   ATGGCCAGCACGCGC        CCATGGGCCGG CAGGGC CCGGCGCACGC         TCTTCATGATGGAAA  44 243
JRI60_RS28085 7008676 .. 7008694 +  -5.9  -3.28712   GGCACAGGCGGCCAT             GGCCTCC TGGGC GGAGTCC             TTCTCGCCCCGGCGC  51 396
JRI60_RS28105 NONE
JRI60_RS28110 7013095 .. 7013105 +  -2.4  -3.79906   CGGTGCGCAGGCTGA                 CGCG GAT CTCG                 TTCTTGTCCGGCTGA  55 304
JRI60_RS28125 7017679 .. 7017703 +  -5.7  -3.63515   GAGGTACTGGACCAT         GT-CGGCGTC GTAGGG GACGCCGCGC          TTGTTACACATGACC  57 244
JRI60_RS28135 7021194 .. 7021223 +    -5  -3.57144   GCGGCTGCTGATGTC       CTGATTCGTCGA GCAGAA TCCGCGAATCGG        TTTCGCGGTCGGAGG  52 22
JRI60_RS28155 NONE
JRI60_RS28160 NONE
JRI60_RS28165 7027341 .. 7027354 +  -3.7  -3.28712   GCGCCGGACGCAGCA               GCTCC AACG GGTGC                TTCTCCAGCGACAGG  47 412
JRI60_RS28175 7031471 .. 7031492 +  -3.5  -2.77862   CTTCGTGCGGGGATC           CGAGGTGGC CATT GCCTCTCCG            TAATCTATTGGTGTG  41 1
JRI60_RS28180 7033552 .. 7033574 + -15.6  -4.54821   TAGACCCTCACCCCG           TCCCTCTCCC AGG GGGAGAGGGG           TTTTGTCCTTCCCAT 100 38
JRI60_RS28205 NONE
JRI60_RS28210 NONE
JRI60_RS28215 7040025 .. 7040042 +  -6.3  -3.25223   GGCCCCTCGTGCGTG             C-CCGGAA CGA TTCCGGAG             TTCCTCGTGTCACTC  53 185
JRI60_RS28220 7041565 .. 7041581 +  -6.6  -3.37755   GAATCCGCCGGGTGT              TGGAAG CATGA CTTCCA              TGTTTCCACCTCTGT  55 39
JRI60_RS28225 7044282 .. 7044293 +  -3.6  -3.85698   GGCGGCGTGCGTACA                CGCT GGAG GGCG                 TTTCTCGCGAAAGCG  57 57
JRI60_RS28230 7044894 .. 7044914 +  -2.5  -3.66803   GTCCGTGATTCTGAT            TGACTTCCA AGG TGACAGTCA            TTTCGAATGTTGAAA  51 110
JRI60_RS28235 NONE
JRI60_RS28240 7046372 .. 7046390 +  -3.9  -3.14132   GCCTGGAAACCAACC            GTC-GGAT CCCG ATCCCGAC             TTCATAAGAGAGGGC  45 0
JRI60_RS28245 NONE
JRI60_RS28250 NONE
JRI60_RS28255 NONE
JRI60_RS28260 NONE
JRI60_RS28265 7052287 .. 7052297 +  -2.4  -2.66733   CTTCGAGGAGAAATG                 AGCC ATG GGCA                 TCGTGTCGATTGGAG  38 25
JRI60_RS28270 NONE
JRI60_RS28275 7053564 .. 7053576 +  -5.5  -2.77899   TCGAGGCCGAGTGCG                CCTTC CTG GGAGG                TCCTTGATGCAGCCC  45 6
JRI60_RS28280 NONE
JRI60_RS28285 NONE
JRI60_RS28290 NONE
JRI60_RS28295 NONE
JRI60_RS28300 NONE
JRI60_RS28305 NONE
JRI60_RS28310 NONE
JRI60_RS28315 NONE
JRI60_RS28320 NONE
JRI60_RS28325 NONE
JRI60_RS28330 NONE
JRI60_RS28335 7079165 .. 7079180 +  -4.7  -3.13403   CAGGAGGCAGGAACC              GCATC GTGGGG GATGC               TGTTCGTAGAGCCAC  47 1
JRI60_RS28340 NONE
JRI60_RS28345 NONE
JRI60_RS28350 7088921 .. 7088945 +  -3.5  -2.92463   ACACGGCACGCCGCC          TCGTAGTGC TGACAGC GCACGGCGA          TCTCTCGCTGGTAAC  42 273
JRI60_RS28360 NONE
JRI60_RS28365 NONE
JRI60_RS28370 NONE
JRI60_RS28375 7093638 .. 7093687 +  -5.6  -3.19463   GAGTCAGCACCCGGC CCGGA-C-ACCTCTCTTCTCGCGG GGTT CCGCGTGACTCGGGGTTGGTCCGG TTCGTGCATGCTGGA  49 125
JRI60_RS28380 7094949 .. 7094984 +  -7.5  -2.79501   GTCGCACGTGGCTAG    CTTGGGCGGAGGTGC GAGGAG GCACCTCCCCATGAG     TCTCGTGACGCTCTA  51 132
        grxC 7095400 .. 7095420 +  -8.2  -3.33696   TCCTCCGGCTGCGCG            GGCCTGAG CTCCA CCCAGGCC            TTCGTTCCCAGCCGC  58 164
JRI60_RS28435 NONE
JRI60_RS28440 7105990 .. 7106010 + -14.1  -3.14132   CGCGCTCCGGACGAA            CTGGTCTGA CTG TCAGACCAG            TTGCTCCCGAGCGCG  73 310
JRI60_RS28445 7107335 .. 7107374 +  -4.8  -3.14344   GCTTCGTCAGCACCC  GCGAGGGCCTCTCCCGCAG CAC CTCCGGCACCGGCTC-CGC  TTCCTCCACCGACTG  47 293
         lon 7113646 .. 7113685 +   -23  -4.57073   TCCAGGATCGAGGTC  GATGACGGGCAGGTTCCC ACTC GGGAGCCTGCCCGTTGTC   TTTTTGGGGAACGTC 100 52
JRI60_RS28470 7114888 .. 7114909 +  -6.5  -3.14132   CCCTGAGCAACACCA           CCCG-CCCCT CGT AGGGCTCGGG           TTGGTACCGCGCCAC  51 232
JRI60_RS28490 7150931 .. 7150965 +  -5.7  -3.14132   GGCTCGCGATGGTGC    CGT-GCGCGCCG-AAGT GGA ACTGCCGGCGCGCCACC    TTGCTCGCGACGGAC  49 439
JRI60_RS28510 NONE
JRI60_RS28515 NONE
JRI60_RS28520 NONE
JRI60_RS28525 7159860 .. 7159870 +  -2.4  -2.57564   GTTGTCGCGGTTCCC                 CGGG CTC CCCC                 CTTGTGGCACCCTCG  38 81
JRI60_RS28530 NONE
JRI60_RS28535 7162199 .. 7162214 +    -9  -3.81701   TAACTCCCTTGCCTT              CCATGC TTTC GCATGG               TTCTGTTCCTTTCTG  71 107
JRI60_RS28540 7163668 .. 7163680 +  -7.7  -2.80816   GCCGTCCACCCGTCG                TCGAG CAC CTCGA                TGTCCTCGCTGCCCA  49 195
JRI60_RS28610 NONE
        argJ NONE
        argR NONE
        argH NONE
        argF 7220679 .. 7220697 +  -9.5  -3.17608   GCGCTCGAACACCTG             GCTCGCG GTGAG CGCGGGC             TGTTCGTCGATATTT  59 179
JRI60_RS28645 7226726 .. 7226746 +  -4.5  -3.28712   TCCGAGAACTGCACC            GAGCCCGTC ACC GGCGTGCCC            TTGTACGAGCGCCCG  49 258
JRI60_RS28675 7232764 .. 7232797 +  -6.2  -3.14211   ATCCCCCAGCCTGAG    CAACAGCCGTTGC-GAG CCG CTCCGCA-CGG-TGTTG    TTCCTGACGACGAGT  51 332
JRI60_RS28695 7240093 .. 7240108 +    -4  -3.50853   GAGGTTCACGAGCAC              CGAATCC GCC GGAT-CG              TTCTGGTTGACGAGC  51 194
JRI60_RS28705 7243766 .. 7243784 +  -4.5  -3.61398   CTCTCCCCTGCGGCC             GAAGGAC TCCGC GACCTTC             TTCTTGAGCGGGGCG  55 471
JRI60_RS28725 NONE
JRI60_RS28730 NONE
JRI60_RS28735 7252446 .. 7252468 +  -4.8  -3.05384   GGCCGGGCTCCGCTA           TCCTGCGA GCCTCCA TCGCCGGA           TTCACTCCAGAGACG  45 58
JRI60_RS28740 NONE
JRI60_RS28745 7255447 .. 7255491 +  -2.2  -2.52464   ACGGATTCAATCCCT CTCCTC-ACC-CTCATGTCTCA ACA TCAGGCATGCGAGGTAGAGGAA TGGGTTCAGGGCGCG  37 296
JRI60_RS28750 7257303 .. 7257319 +  -5.1   -4.2828   TATCGGAGGGAGGCG              TCCGC CAGTTGC GCGGA              TTTTCGTCCGTCCCA  69 263
JRI60_RS28765 7261340 .. 7261372 + -15.5  -2.80074   CCGTGAGCCGGTGAC      AAAGGGAGGGGCTCG GAC CGGGCCCCTCCCTCC      TCATGTTGTGCGGCA  75 35
JRI60_RS28770 7262123 .. 7262134 +  -2.2  -3.59979   GTGAGGAACCACGTC                TGCG CCCG TGCA                 TTTCCCGTGAAGAAG  51 426
JRI60_RS28785 NONE
JRI60_RS28790 7266281 .. 7266294 +  -3.7  -3.66356   CAGGGTCCCCTACGC               GGGGC CTGG GCGCC                TTTGCCCTTCACGAT  54 154
        typA 7268271 .. 7268309 + -16.7  -3.09492   TCTCCCTCTGGGAGA  GGGCCG-GGGTGAGGGTC TACG GGCCCCCACTCGCGGCCC   TCTTGGCGTTAAAAG  81 108
JRI60_RS28800 NONE
JRI60_RS28805 7270169 .. 7270186 +  -2.6  -3.28712   GCTCAGCGCTTGGAG             CCTCCG TGCAGC CGCAGG              TTCTCCCGCCACAGC  44 56
JRI60_RS28815 7273229 .. 7273248 +  -3.5  -3.28712   TGGCGCACTGCCCCT            GCGTCAG CCCCGC CTGAAGC             TTCTCCAGCAGGCGC  47 83
JRI60_RS28825 NONE
JRI60_RS28830 NONE
JRI60_RS28835 7279550 .. 7279566 +  -2.1  -2.79183   GGCCAGCAGCCCTCT              CCTGGGC ACG GACCAGA              TCTCCTCGCCCTGGG  39 87
JRI60_RS28865 7289901 .. 7289922 +  -2.9  -3.28712   GCCGAGCTGCAGGTA           CGTCTGCGC GTTC GAGTAGATG            TTCTCGCCACCCAGC  45 493
JRI60_RS28920 7303968 .. 7303991 + -13.2  -2.87132   AAGCACGCAAGCCAG          GGGCTCTTCA CGAA TGAGGAGCCC           TCTCTCCCACCCGGG  69 248
JRI60_RS28925 7305798 .. 7305819 +  -7.3  -3.29325   ACGGATGGGGGTGCT           GCTCTGG GAGTCGAG CCAGAGC            TCTTCCTTCTGCGCC  54 505
JRI60_RS28950 NONE
JRI60_RS28955 NONE
JRI60_RS28960 7313153 .. 7313168 +  -4.6  -2.63723   GCGCGGTGAGCGGGA              GGTGGC CCTT GCCAGC               GTTCGTTGATAGCCA  42 1
JRI60_RS28965 7313923 .. 7313944 +  -2.9  -2.71712   CTCGCGAGAGCCAGC           TCATGAGCT CACC AGCGCATGC            ATTTCCCCGGCAGCA  40 20
JRI60_RS28970 NONE
JRI60_RS28975 NONE
JRI60_RS28980 NONE
JRI60_RS28985 NONE
JRI60_RS28990 7318618 .. 7318654 +    -8  -3.57144   GCCCCCACATAGGCG   CCCGTACCACCCATGAT CGGA ATCA-GGGAGGTGCCGG    TTTCGGCCTCCCGGC  58 132
JRI60_RS29005 7322794 .. 7322805 +  -5.8  -3.65046   ACGACCGCGAACTGC                CAGG GCGG CCTG                 TTGTTCGAATCCGCC  57 219
JRI60_RS29015 NONE
JRI60_RS29020 7325679 .. 7325718 + -11.4  -3.38768   GGTGCTTCCCATATG  CGTGGGGTACGTCTGG CTCTGGTT CCAGGCGTACCCACCG   TTGTAGCTACTCTCC  67 355
JRI60_RS29050 7332020 .. 7332041 + -11.5  -2.58544   ACATGTCCGCCGTGG           CCGTCCACG TGCC CGTGGCCGG            GTTGTACACCTCGGC  59 451
JRI60_RS29070 NONE
JRI60_RS29090 NONE
JRI60_RS29095 7340390 .. 7340401 +  -7.2  -3.76224   GGGGCAGGCCGAGAT                CGCC ACGC GGCG                 TTTGCTCGATGCCAG  64 95
JRI60_RS29100 7341136 .. 7341178 +  -9.2  -3.53811   CTCCTTCGGCCATGG CGCGCTCGAGGCGC-TC-GCG GATG CGCTGAAGCACCT-GGGCGCG TTTCGCCACGATGAG  61 282
JRI60_RS29110 7342559 .. 7342574 +    -6  -3.44051   GCATTACTTCGAGGC              GGCGGC GCGG GCGGCC               TTGTGCTGATCGCGC  55 188
JRI60_RS29145 7347625 .. 7347647 +  -6.2  -3.78934   GCCTTTCCAGAAAAT           TCGGCTGC ACTCTAA GCCGCCGA           TTGTTGTGCGCCGGG  62 105
JRI60_RS29150 NONE
JRI60_RS29155 NONE
JRI60_RS29160 NONE
JRI60_RS29165 NONE
JRI60_RS29170 NONE
JRI60_RS29175 7355996 .. 7356026 + -18.3  -3.45571   GGGGAAGTACGGCGG       GCGCCGCCACTCC GATGA GGGGTGGTGGCGC       TTCGTCTTTCCAGGG  89 73
JRI60_RS29180 7358869 .. 7358881 +  -4.7  -3.28924   CCACACCATGCTGGC                CCCCG TAT CGCGG                TTCTCGGGGCCGCTC  49 297
JRI60_RS29190 NONE
JRI60_RS29195 7362225 .. 7362264 +  -3.6  -3.35809   GCGGTATCTAGGAAG GACCACGGTTCGAGGAGC GATAAA GCTCCTC-A-CCGTGGAA  GTTTATTTAGTTATT  49 30
JRI60_RS29200 NONE
JRI60_RS29205 7364856 .. 7364889 +  -9.5  -3.35597   CGTGTTGCGCATGCT     CCCTCTCCCTCTG GGAGAGGG CGGGGGGTGAGGG      TCTTTCCACGGTGGG  63 517
JRI60_RS29255 7377265 .. 7377275 +  -2.4  -4.18018   AAATCGCGGTCACCC                 GGAC TAA GCCC                 TTTTCACTGGAACAG  62 74
JRI60_RS29260 NONE
JRI60_RS29265 NONE
JRI60_RS29270 7381844 .. 7381874 +  -8.3  -3.27653   GCCCAGACCTATGAG      GCTCCGAGCTCGCG TCAG TGCGAGCTCG-ACC       TGTTCTCGTGCCGCT  58 113
JRI60_RS29275 NONE
JRI60_RS29280 NONE
JRI60_RS29285 7383924 .. 7383970 +  -2.1  -3.04398   GCAGAAGCGCGGCAC GGGCTGGGGTAGAAT-GCCGCCC CCG GAACGCCCATGCT-CCCCTGCCC CTTTTGCGCCAAACC  41 55
JRI60_RS29290 7385070 .. 7385088 +  -5.8  -3.28924   GTGCGGATGACGCGC             CGCCGCGG AAA CCCCGGGG             TTCTCCCGGCCGATC  51 428
JRI60_RS29300 NONE
         lnt 7387962 .. 7387977 +  -4.6  -2.70932   CGCGGCCGGGGGTCG              GCGGAG AGCC CTGCGC               TACTTCACGACGACG  43 67
JRI60_RS29320 7393157 .. 7393169 + -10.5  -2.79501   CCCCATCTTCGAGTA                GCCCC CAA GGGGC                TCTCGTGAAGGTGTC  57 25
JRI60_RS29325 7393978 .. 7393996 +    -3  -3.17334   CAGCGGCGCCACCGC             TCGTGACG CAT CGTCCTGG             TCTCTCTTGATTTGA  45 229
JRI60_RS29345 7397455 .. 7397488 +  -7.5  -2.79183   TGGCGGACCGGCGAC    CCCTGCCCAACCTCC TCTCAC GGAGGT-G-GCGGGG     TATGGTGCGGCTCAA  51 64
JRI60_RS29350 7398047 .. 7398080 + -15.3  -3.28924   TTCGAGAGACCCTCA     CCCCG-ACCCTCTCCC GAA GGGAGAGGGAGTGGGG     TTGTGGGGGACGGTC  80 121
JRI60_RS29385 NONE
JRI60_RS29390 7411576 .. 7411603 +  -4.8  -3.29829   CAGACCGACGATGAT        GGTGTTGCCTCGA TAG TCG-GGCACTGCC        TTGTACCCCCCTCTC  49 445
JRI60_RS29415 7415837 .. 7415847 +  -2.4  -3.33261   GCGACAGCTCCTTGA                 GCGC ATC GAGC                 TTCTCGCGGTTGAGA  45 123
JRI60_RS29450 7419875 .. 7419905 +  -3.2  -3.03124   TAGTCCCCTCCTCCG      TGCCCGC-CCCTT CGAACC AGGGGAGCAGGCG       TCTTCCGGAGTGACA  42 38
JRI60_RS29455 NONE
JRI60_RS29460 7422210 .. 7422249 +  -3.4  -2.73875   GCCGATGCTCGACAC  CGACTCGCCG-TAGTCGAG CAC CTCCGCGAGCCGCGAGCCG  TCCTCTTCACCACCC  40 236
JRI60_RS29475 7425129 .. 7425149 +  -3.2  -3.61398   TCGCGGGCCACGGGA           GCGCTCGTC TGCT GG-GGGCGC            TTCTTCACCGAGGCG  53 391
JRI60_RS29495 NONE
JRI60_RS29505 7431851 .. 7431872 +  -8.7  -3.29144   CTCGGTGAGGCCCGT           GTGGACGGA GACC TCCTTCCAC            TTGTCGCCACCATCG  58 491
JRI60_RS29530 NONE
JRI60_RS29535 NONE
JRI60_RS29540 NONE
JRI60_RS29545 7444695 .. 7444712 +  -6.3  -3.64703   GTGGGCGTCGGCGGG             CTGAGCAG CAG CTGC-CAG             TTTCCGTCCGGGGCG  59 220
JRI60_RS29635 7469883 .. 7469910 + -19.9  -3.72576   GGAGCCCCTCCTCGA        CCCCTGCCGCC ATGCCG GGCGGCAGGGG         TTTGGTGGGAACCCC 100 56
JRI60_RS29640 7471786 .. 7471808 +  -9.8  -3.01712   GCGCGGGCATGAGCG           GCGGAGGATT CAT GATCCGCCGC           TGTTCGGGCACGGAC  57 248
JRI60_RS29650 7474756 .. 7474782 + -14.5  -4.86731   CTGAATCCGTCTGCG        TCCCCTGC-CCC TCCC GGGCGCAGGGGA         TTTTCTTTCCAGGCG 100 54
JRI60_RS29680 NONE
JRI60_RS29685 NONE
JRI60_RS29690 7482723 .. 7482742 +  -5.6  -3.02511   GAGCGGGGGCATCAC            GGTCAGCCC GGT GGGC-GCCC            TCTTCACCGCGTGCA  47 81
JRI60_RS29710 7486523 .. 7486535 +  -4.7  -3.16564   CCGCGCCTCCACGCA                CAGCG GCT CGCGG                TTGATGGCCTGCGCG  47 344
         ald 7497872 .. 7497908 +  -7.8  -4.34263   CGCCAGATGTCTCCC    ACCCGCCGGGGCAG CCGTGCAAA CGGCGCCGGCGGGC    TTTGTGTTGTTGCCC  77 99
JRI60_RS29765 NONE
JRI60_RS29770 7499718 .. 7499730 +  -3.3  -3.12351   GCGCACGCCCTCTCC                GGTCT GGC AGCCC                TTACATGTCCAAGAA  44 188
JRI60_RS29775 7501639 .. 7501655 +  -5.1  -3.28924   CGTTCTTGTCCCGGC              TGAGCTC CTT GAGGTCA              TTGTCGCGCAGGGTG  51 205
JRI60_RS29815 NONE
JRI60_RS29820 NONE
JRI60_RS29825 7514517 .. 7514532 +  -4.6  -3.18681   GGCCATGCGCCCGTA              CACCAC GCTG GCGGTG               TTGATCCGCTTGCCC  47 501
JRI60_RS29840 NONE
JRI60_RS29845 7520107 .. 7520161 + -10.5   -3.7282   GATCTCCACACGCAC CCGCCCCTTCCCGCTCCGCGTGC GGATGCCGA GCTCGTGGGGCCCGGAGGGGCTG TTCTTCATGGAGTGG  73 269
JRI60_RS29860 NONE
JRI60_RS29870 7526472 .. 7526486 +    -7  -3.38326   CAGCACCTGTCGCTG               GCCGGG AAG CGCGGC               TTGCTTCCGGTTGTC  56 93
JRI60_RS29875 7527210 .. 7527224 +  -4.2  -3.14564   GCGGCGTCGAACACG               GCGC CGTCCTC GCGC               TTCGTGCGCACGTAG  47 265
JRI60_RS29905 NONE
JRI60_RS29910 7538385 .. 7538397 +  -4.7  -3.71284   CCAGCGGTCTTGGGA                GGACC CGC GGACC                TTCTCTTCCTGAACG  55 1
JRI60_RS29915 7539494 .. 7539524 +  -6.8  -3.79906   CACATCTCCCAGCCG       GCGCAGCAGCGC CTCCTTC GTCCTGCTGTGC       TTCTTGTACAGGTAG  62 217
JRI60_RS29930 7541459 .. 7541483 +  -9.9  -3.14931   GAAGACCCTCACCCT          GACCCTCTCCC AGA GGGAGAGGGGA          TTGCTACGGGATGAC  62 64
JRI60_RS29940 7545339 .. 7545384 + -11.2  -3.21099   CCGAAGCTGGACCGA CGCGGA-CAGGTTGC-GCCCGAG CTC CTCGGGCCGC-ACCGGCTCCCCG TTGATGATGAGACGC  62 221
        msrA 7546688 .. 7546698 +  -6.8  -3.64487   TGGCGATCGTGATCA                 CCTG CGA CAGG                 TTGTTGAAGGTCTCG  59 436
JRI60_RS29985 NONE
JRI60_RS29990 7556484 .. 7556495 +  -5.8  -2.62184   CTCGACTCCGAGACT                CCTC GACG GAGG                 TAGTCTGGCGGCGGC  44 11
JRI60_RS29995 7557784 .. 7557813 + -22.9  -3.76224   TTCTGGAACGTCAAA       GGGGCCAGCCGGG TGAT CCCGGTTGGCCCC        TTTGCTGGGTCCACG 100 52
JRI60_RS30005 7562366 .. 7562404 +  -3.8  -3.18582   ACGGCGACCGCAGCT  TGCCCCAC-CCTTTGAG AAGGTA CTCAACGGCGAGGCGCA   TTCGTGCCTCACCTG  45 144
JRI60_RS30010 7563722 .. 7563736 +  -5.6  -2.71364   GCAGCCGGAAGAGCC               CCACCG GCC CGGTGC               TGGTTCCCGCCGTGA  45 55
JRI60_RS30035 NONE
JRI60_RS30040 7574071 .. 7574105 + -12.1  -3.75153   CTGAAGGAGTACGAA    CCGGCCCCCG-CCC ATTGACCG GGGTCGGGGGCCCG     TTTCCGTTCCGCCGC  77 8
JRI60_RS30055 7576896 .. 7576908 +  -5.5  -4.11484   GGCGTATGCTTCGTT                CTGGA AAT TCCGG                TTTTGGACAGTTAGA  64 86
JRI60_RS30060 7580447 .. 7580459 +  -9.1  -3.01712   CGCCTCATCTTCTTC                CCCAG CCA CTGGG                TATTGAGCCGGACGC  57 469
JRI60_RS30070 7582761 .. 7582771 +  -4.6  -5.02074   ACGGGGTGAGGGTAC                 CGGG CCC CTCG                 TTTTTTCACCCGTGC  83 110
JRI60_RS30090 7587682 .. 7587710 +  -5.7  -3.53811   TCAGGGCACCCGCTC        CGGGTCGCGCCGC TCG GCGTCCCGCACCG        TTTGCCGAAGCTCGG  54 56
JRI60_RS30115 7591527 .. 7591543 +  -3.7  -3.66095   TGACACGCGAATAGG              TGATTTC CCA GAAATCC              TTTGCATCCGGGTTT  54 27
JRI60_RS30120 NONE
JRI60_RS30160 7606538 .. 7606571 +  -6.5  -2.52543   AATCCAAGGAGCTCA     CGGTGGGTGCACTGC AACT GCTGCGCGGTCACCG      TGAGTTCCGGGCCCT  45 55
JRI60_RS30165 7608274 .. 7608298 +  -4.2  -3.65046   GTTGGTGATGGTGAC         GTTG-CCGGTG AAGC CGCCGGACCAC          TTGTTGGGCTCGGAG  55 524
JRI60_RS30205 7621585 .. 7621598 +  -3.1  -3.53012   AGTGATCGCGACAAA               CGCACT GAC AG-GCG               TTTGAACCCGGGCCG  49 7
JRI60_RS30210 7622758 .. 7622772 +  -4.2   -4.0274   CGGGCTCCGGCTCAT               TTCCGG TGA CCCGAA               TTCTTTCCTCATACG  59 47
JRI60_RS30215 7623890 .. 7623946 +  -7.3  -2.74999   CCTCCACGAAGATCG TGTGCCGGCCCGGTGCCAGGCCAGAGGT GAAG ACCG-TGGCCTG-CACCGACTCGGC-CG TGCTGTTGAAGCTTC  49 115
JRI60_RS30225 7626682 .. 7626697 +  -2.4  -3.12668   ACCCCCTTTGGTGGA              TGGGGC GTAC GCCCGG               TTCGCTGTACCCCTG  42 174
JRI60_RS30230 7630135 .. 7630154 +  -4.9  -3.21099   ACCTGAAGCTGCCGA            GGACGGC GGGGCG GCCATCC             TTCGTCGTCACCAGG  47 150
JRI60_RS30250 7635338 .. 7635379 +    -3  -3.86822   GTCCTCGTGTGTCAC CACGCGAAAGACTTTCGCT CCGAT GGTGAAGGACTCTCGC-TG TTTGTCCGAGCCTTG  56 438
        sseA NONE
JRI60_RS30270 7639429 .. 7639457 +  -2.2  -2.90723   GTGCGTGTCATGCTA       CGGGTATGAGGGC AACT GCCC-CTCCCCCG        TCTGGTTGGACATGG  40 132
JRI60_RS30275 7641501 .. 7641533 + -15.6  -3.63515   CGGTCCTACCTACCC      GACCGCTTCTTCGC CTTGC GCGCGGAAGCGGTC      TTCTTCGCGCTCCCC  85 93
JRI60_RS30290 NONE
        ribA 7648623 .. 7648646 +  -2.2  -3.13475   GACGAACAAGGGGAG          AAGCACGCGC AGGC GCGGGTGCCC           TTCCATGTCCGATTC  42 42
JRI60_RS30300 7649756 .. 7649781 +  -8.9  -2.62616   CCGTCTCCTCGAACA         GCTCGCGGGCGG CGG CCTCCCG-GGGC         TGCTCTCCCGGCTCC  50 307
JRI60_RS30325 7655380 .. 7655419 +   -15  -2.87132   GAACGGCCTGATTCC  CCCCCACCCC-TCTCCCTC CGG GAGAGGGACGGGGTGAGGG  TATCTGAACCCACCG  73 30
JRI60_RS30335 NONE
JRI60_RS30340 7658937 .. 7658974 +  -9.1  -3.09492   AAGCAGTGACCGTGT   CCATC-CCCTCTCCCTCT GGG AGAGGGTTAGGGTGAGGG   TCTTCCCCTTCCGAG  59 32
JRI60_RS30345 NONE
JRI60_RS30350 7661860 .. 7661875 +  -2.5  -2.57344   ACCTGCTGCCGATCA              GCTTC CACGTC GAGGC               GTTCTGCGAGCCGTA  38 225
JRI60_RS30405 7672088 .. 7672117 +  -9.9  -2.74741   AACTCCCGCGACTGA       GGGTCAGGTCTGG TCAA CCAGACCCGGCCG        TACTTCAGGTCTGGT  57 26
        moaA 7673742 .. 7673760 + -17.4   -2.8001   CTCAGGGTAGTCAAC             GGGCGCGG TCA CCGCGCCC             TCTCCTCCCCATTCT  80 514
JRI60_RS30425 NONE
JRI60_RS30430 7678394 .. 7678408 + -11.4  -3.35046   CGTCGGATCTTCGAC               GCGCTC CCG GAGCGC               TGTTTCCCCAGCTCC  68 504
JRI60_RS30440 7680481 .. 7680495 +    -7  -3.05844   CCAGCAGATCCACCA               CGCGGC GCA GCAGCG               TCTTCACCTCCACCG  49 446
JRI60_RS30460 7683866 .. 7683893 + -19.2  -3.78778   TGATGGGAGATTCCC        CGCCGGGATGGC TCAA GCCATCTCGGCG         TTGTTCGTGTAGTAG 100 38
JRI60_RS30470 7685670 .. 7685683 +  -4.5  -3.14132   GAACAAAGTCAACTA               CACGG GAGG TCGTG                TTCGTGGAAGGGAAG  47 155
JRI60_RS30475 7686059 .. 7686085 + -15.8  -5.75342   GCCACCTGCTGTCTG         GCGCGCGGGACT TCC AGGTCCGCGCGC         TTTTTTTTCGACGAA 100 47
JRI60_RS30485 7691070 .. 7691086 +  -6.5  -3.28924   TGGGTTGATTGATGC              CCGCC GTCACCA GGCGG              TTGTCGGAGGGGGTG  53 442
JRI60_RS30515 NONE
JRI60_RS30520 7700358 .. 7700380 +  -2.7  -2.93455   ACGGAGCCGTCGCAT          GCGATCCAGA TTGA TC-GAATCGC           TCGTTGTCTGTGTCG  41 58
JRI60_RS30525 7701772 .. 7701802 +  -3.8  -3.78934   GTCGATGTCGTTCTT       GAGCTCGAGCGTCG TCT CGAAGGGCGAGATC       TTGTTGTCGCGGAAG  56 389
JRI60_RS30540 NONE
JRI60_RS30545 7705703 .. 7705720 +  -3.4  -3.78934   ACGTCCGGCGCGAAG             CGCGCGA CCACC TCGC-CG             TTCTTGTCGACCAGG  56 108
JRI60_RS30555 7706711 .. 7706740 +  -4.1  -3.17392   GCAAGAGAGGACTCA       GGGATGCTCCAGC ATGG GGAGCGGCATCCC        TTCCCTTGCCACGTA  45 42
JRI60_RS30570 7709220 .. 7709233 +  -3.8  -2.55074   AGGGGCTGGACGCCG               GCCA GCGCGG TGGC                TCAGTTCCGCTTGAA  40 77
JRI60_RS30630 NONE
JRI60_RS30635 7723890 .. 7723902 +  -4.7  -2.77899   CGAGGAGACGTGACG                CCGGC GGT GCCCG                TGCTTCCTCGCCCCG  43 28
JRI60_RS30640 NONE
JRI60_RS30645 NONE
JRI60_RS30650 NONE
JRI60_RS30655 7728949 .. 7728992 + -11.7  -3.17051   GAGATCGCCCCCGGT GGCGC-GCACGTCCGCGCGGC CCGC GCC-CGTGGACGTCCAGCGGC TCTTGATGCTCCAGC  65 185
JRI60_RS30665 7732066 .. 7732087 + -15.9  -3.01712   CCGCTGGCCAACGCA           TGAGGGCCC CACG GGGCCCTCA            TGTTCCAGCGCCGGA  77 49
JRI60_RS30670 7732985 .. 7733029 +  -3.4  -2.71681   ATGCTGTTGATGCGT GCTCCGCGTCCACCCCAGGCA GCGC TGGC-GCCCTGGACACGGAGC TGGTTGGCGCGCTTG  40 354
JRI60_RS30695 7737791 .. 7737802 +  -2.2   -3.0094   CGCCAGTCCCCTGAA                GC-GC ACG GCAGC                TCTCTGTCACTCCCA  41 27
JRI60_RS30700 7738827 .. 7738878 +  -7.4  -2.75074   CCGGGAAGGGGGCTT CTGA-CAAC-ACGGACTCTCAGGT GCGGAA ACCTGGGAGTCCGTTGGGGATCGG TGCTCTTCACCTCAA  51 22
JRI60_RS30725 NONE
JRI60_RS30730 7745276 .. 7745304 +  -5.3  -2.72344   GCTTCGAGCCCTTGG       GAACGTGGACGC AGCCCA GC-TCCACGTCC        TCCTTGACGGTGCGC  44 401
JRI60_RS30740 7747468 .. 7747498 +  -3.9  -3.62046   CGCTGCAAGCACCAC      GA-GGTGCGCCGTG TCCT CGCGGGGCAGCGTC       TTCTTCCGACCGTGC  53 270
JRI60_RS30750 7749238 .. 7749262 +  -5.7  -3.09878   CATCCTCGCGGCCCT          GACTGTTAAGC GCC GCTTAAGAGCC          TATTGGCTCCATGGC  49 497
JRI60_RS30760 7750475 .. 7750492 +  -4.8  -3.38951   TCCCTGGCACGTAGT             CATCCG CGGGCT CGGGTG              TTCATCTATTCGTGA  51 151
JRI60_RS30765 7751787 .. 7751805 +  -4.5   -3.3761   ACTGCTGCTCAAACA             CCACTCC GGGCA GAAGTGG             ATTTTGTTCCGCAAG  51 264
JRI60_RS30775 NONE
JRI60_RS30780 7754166 .. 7754179 +  -8.1  -2.93991   CGCTCCGCACTGAGC               GGAGC TCCA GCTCC                TCTCCTTCGCTTCCG  52 28
JRI60_RS30790 7755258 .. 7755268 +  -6.8  -3.44051   GGGGGCGCAGCATGC                 CCAG GTA CTGG                 TTGTAGTCATGCGGG  56 517
JRI60_RS30800 7757186 .. 7757214 +  -4.5  -3.76224   AGGGACTGACTGCTG        CACACTGTCAACC ACC GGTTCACAGCCTG        TTTGCTCCCTGAACG  58 106
JRI60_RS30805 7758700 .. 7758727 +  -3.2  -4.37092   TCCTGGCTGCGAGCT        CGAACGTCACGC TCCT GCTGGGCGCTCG         TTTTGTCACGGCCCT  66 342
JRI60_RS30815 7759171 .. 7759186 +  -2.4  -3.64703   CACCCATCGTCAAGC              AGGGCT TGAT GGCCCG               TTTCCATCCCGACAA  51 17
JRI60_RS30825 7761117 .. 7761133 +  -3.6  -3.66908   CACGCCGACACTGCG              GCCCCT ACGCC ACGGGC              TTCCTTTTGAGACGG  54 231
JRI60_RS30845 7765859 .. 7765887 + -20.3  -3.26779   CTCCGGAAGCACGAA        GGGCACGGCTGCT CCT GGCGGCCGTGCCC        TCTCTCTTTTCGCAC 100 52
JRI60_RS30855 7767603 .. 7767652 +  -5.5  -2.70932   TCACCGCCACCACCT GGTCCCCCACCCGCAGCCCCGC CTGCGCC GCCGGGCTGCTGG-GGTACACC TCCTTCACCACCGCG  44 502
JRI60_RS30895 7775287 .. 7775334 +  -6.2  -3.64703   GGCCTCCCTCTCACC CCCGGGCGGCGGGCGGACGGGC GATGAA GTCGCTCC-CCTGCC-CTCGGG TTTCCCTGGGCAACA  59 40
JRI60_RS30900 NONE
JRI60_RS30905 7776934 .. 7776967 + -10.2  -2.79796   TCCCTCTGGGAGAGG     GCTGGGGTGAGGGT CAACGA ACCCGCGCCCGAGC      TGTCATCCCCTGGAC  57 127
JRI60_RS30910 7780707 .. 7780718 +  -5.8  -3.31461   CGCCGCTGCTGCGTC                GTCC AGTC GGAC                 TTGTAGGACTCGGTG  51 203
JRI60_RS30930 7785722 .. 7785777 +  -3.7  -3.13403   TCCCCCAGTCCCGGG CGGCGTGAGGGGCCCCGGAGTCGAGG CCCCA CC-CGACTACAGGCCGCTGCGCGCCA TCTTCATCAGGCAGC  45 18
JRI60_RS30965 NONE
        treZ NONE
JRI60_RS30975 7797225 .. 7797247 +  -2.7  -3.95324   CGATGAGCTTGCCGA          CG-CGAGG AACAGCGG CCTCGACG           TTCTTCTTGGCGGTG  57 165
JRI60_RS30990 7799769 .. 7799799 +  -5.3  -3.44051   CTCCAGCAGCACCGC      GCCCG-CGCCGTCC CCGA GGATGGCGGCGAAC       TTGTGATGCTGACCG  53 513
JRI60_RS31005 7803737 .. 7803756 +   -15  -3.29144   GGGGGGGTCCGCGGA            CCGCCAGC CGCT GCTGGCGG             TTGTCGAGCAACTGC  75 516
JRI60_RS31015 7808044 .. 7808076 + -15.6  -2.71144   CCCGAGCCTACCCGC     TGACCCGCTCGCGCC ACCG GGC-CGAGCGGGTCC      TCCTTCAACGAGCTC  75 43
JRI60_RS31025 7810521 .. 7810531 +  -6.8  -3.66356   CTCTTCTTCCTGGCT                 CTCC AAG GGAG                 TTTGAGGTTGAAGGT  61 48
JRI60_RS31035 7812606 .. 7812642 +  -6.4  -3.28001   ACCACGCTCATCAAC   CGTCCGCGGCG-CGAGC CGGG GCCGGACGTGGCGGACG    TTGGATTTCAGCCTG  53 266
JRI60_RS31040 NONE
JRI60_RS31045 NONE
JRI60_RS31050 7815718 .. 7815741 +  -2.3  -3.14294   GATCTTCCCGAGGGC          CAGACTCGC CTCCGA GCGAACCTG           TTCAATCTCGCTCTT  44 149
JRI60_RS31060 7818053 .. 7818083 +  -3.9  -3.70773   AGCGTTCGCCAGCTC      GGTCAGCTCCCGCG CGCG TGCGGC-GTTGGCC       TTCTTGAATATGAAG  53 486
JRI60_RS31080 NONE
        trpS NONE
JRI60_RS31095 NONE
JRI60_RS31100 7828322 .. 7828341 +  -7.8  -3.62522   CCAGCCAGCGCAGTC            GCTGCTGC ACGC GCAGCAGG             TTATTAAACGACTTC  63 391
JRI60_RS31110 7828817 .. 7828827 +  -8.2  -3.17723   GGACGAGACGGGACG                 CCCG GCG CGGG                 TTCGATTCCCGCTGC  56 88
JRI60_RS31115 7829600 .. 7829613 +  -3.1  -3.06915   GATGTGGATGAAAAA               CGCGGT TGG ACC-CG               TTCCCTCGCGTCCCT  42 75
JRI60_RS31120 7831133 .. 7831165 +   -25  -5.52384   CCCTCTCAACTCCCG      GAGCCCGGCGCGAA ACATG TTCGCGCCGGGCTC      TTTTTTTCATCCGCG 100 51
JRI60_RS31125 NONE
JRI60_RS31130 NONE
JRI60_RS31135 NONE
JRI60_RS31140 NONE
JRI60_RS31145 NONE
JRI60_RS31150 NONE
JRI60_RS31155 7839040 .. 7839054 +    -7  -2.62184   CCTCCTGCCGCTTCC               GGAGCG CAC CGCACC               TGCTATGAGCACCGC  47 3
JRI60_RS31160 7839856 .. 7839871 +  -2.4  -3.13164   GGACGAGCCTCCTTG              ACTGGG AGGT CCCGGG               TTCCGTGATTCGACG  42 25
JRI60_RS31165 7841333 .. 7841375 +    -4  -2.82516   GGGTGGCCTGAGCGA GCCCCCCG-CGTGAGGGGA GCGCCA TCCCCTCACGACCAGGAGA TGTCGTACTCCACCC  43 30
JRI60_RS31180 7844059 .. 7844095 +  -2.7  -4.85599   GGGGCTCCATACCCT    CACCCCGGCCCTCTCCC AGA GGGAGAGGGTCGAAACC    TTTTTCTGGGGTCGG  77 63
JRI60_RS31210 7848616 .. 7848657 +  -5.8  -2.82635   TGGCGGGCCCTCTGA GTCAGCTGGCGATGCTGCGC AGCA GC-CGGCC-CGCCAGCTGGG TGTACTGATCGCGCT  46 26
JRI60_RS31240 NONE
JRI60_RS31245 NONE
JRI60_RS31250 7858947 .. 7858984 +  -5.5  -3.14051   CAGGTGCACGGCCAT   GAAGC-CTGAGCGGTG AAGTACC CGCCGCTCAGCGCCAC   TGTTCCTGGGAGTCG  49 46
JRI60_RS31275 7864167 .. 7864195 +  -7.9  -3.05463   CTACTCCCTCGGGAA        GCAGGCCACGGGC AGT GCCCACGGCTCGC        TTCCGTGAACGCCAT  53 114
JRI60_RS31290 NONE
JRI60_RS31295 7869636 .. 7869660 +  -5.6  -3.10796   CCTGGGTGGATTCAT         CGCCCGGGTCG GGCA CG-CCTGGTCG          TCTTGCGTGCTCCGA  49 230
JRI60_RS31300 7871785 .. 7871825 +   -22  -3.57971   GCGAGGCCGCTGAAT  GAAAAAGGCCGTCGGACC AACAG GGTCCGGCGGCCTTTCTC  TTTCCAGCTCCCTCT 100 56
JRI60_RS31325 7877304 .. 7877346 + -11.1  -3.47345   GGTGGAGCTGATGGG CTGAGCCCCCGCCTCCGGAC TAAC GGCCGGCGGCGGAGGA-CAG TTCTGGTATCCGCTT  68 22
JRI60_RS31335 7880081 .. 7880126 + -13.2  -3.01924   CTGGCGGCCTGAGAG AGGCAGGTGGTCTTCACGCG GGCCCG TGCGCGAGGTCCACCTGCCC TGTTCCCACGGCATC  70 29
JRI60_RS31345 7881846 .. 7881872 +  -7.2  -3.10715   CGGCGCTGTCCGCGC         GATCGGCGGCGA GGA TCGCCATGGATC         TTGCCTGCTCGTGGG  52 358
JRI60_RS31395 7897039 .. 7897071 + -10.6  -2.78384   ACGCATAACTGGCGG     TGGCCTTGTTGCCGC TCTC GCGGT-GCAGGGCCA      TCTCCTCGCGCAACC  57 239
JRI60_RS31420 NONE
JRI60_RS31425 7900703 .. 7900750 +   -17  -4.07568   CGTCGGGGACACAAA AGCCAAGGCCGGAAGCCGCTGA GCGA TCAGGGGTTTCCGGCCTCGGTG TTTTCAGGCCCCAGC 100 28
JRI60_RS31435 7903212 .. 7903249 + -19.2  -4.77036   AACGCACTGCGACGA   CAGCCCCGGCTCCGAGG TCTCT CCTCGG-GCCGGGGCTC   TTTTTCATGCTCGAG 100 316
JRI60_RS31450 7906098 .. 7906123 +  -9.7  -3.72324   CTCCATCCCGAGAAG         CCTGGCAATCT CGTG GGGTTGCCGGG          TTCTTCCTGGCCCTC  68 204
JRI60_RS31465 NONE
JRI60_RS31470 7912569 .. 7912587 +  -7.3  -4.15044   CGAGGTTCGCTTGAG             CGTGCCG CCCCC CGGCCCG             TTTGTTCCACCCCGG  67 27
        ygiD 7913876 .. 7913889 +  -3.7  -2.70946   AAGAGCATGTCGTCG               GCGAG CACG CGCGC                ATGTTTCTCGGGAAG  40 308
JRI60_RS31495 7919252 .. 7919263 +  -3.6  -3.21099   AGCACGGGGACACGA                GGCG TCGG TGCC                 TTCGTCGTGGCCCCG  45 234
JRI60_RS31505 7921633 .. 7921668 + -12.5  -2.62184   GGTTCTGGCGGTGAG    CGCGCGGGAGCCCTCC AGACA GGGGGGC-CCCGTGCA    TGCTATGGGCGGCGC  64 44
JRI60_RS31510 7922407 .. 7922434 + -20.6  -2.70932   AGCACGGCACTTCCC        CGGAGGGGGGCG GAAA CGCCCCCCTTCG         TCGTTGCGGGCCCCC  95 281
JRI60_RS31535 7929086 .. 7929098 +  -3.3  -2.52543   CGTTTCCGTGAGAAC                GGAGG ACT CCTCG                TGCCTTCGAGACAGT  39 30
JRI60_RS31540 7930177 .. 7930190 +  -5.9  -3.30124   TGCGCACCTCCGCCG               CGTGC TTCA GCGCG                TTGTGCGCCATGCGC  51 488
JRI60_RS31585 NONE
JRI60_RS31590 NONE
JRI60_RS31600 7947468 .. 7947515 +  -6.2  -2.79831   TCCCGGGTGTCAGGA G-CCAGCG-GCGGGCCCGTCAT GGTAGG GTGAAGGGGCCGCTCGCGGGAC TGTGATGCGACTTCC  47 45
JRI60_RS31605 NONE
JRI60_RS31610 7950322 .. 7950342 +  -8.1  -2.70932   CCCTCCCCCGCCACC            CGGGGCGAC TCG GGCGCCGCG            TCCTTCGACAGCAGG  49 60
JRI60_RS31625 7953917 .. 7953943 + -17.3  -3.08679   GCCCCGAAACAGGAA        CGCCCGGGTGCC ACGA GGC-CCCGGGCG         TCTTCACTCCAGCAG  84 45
JRI60_RS31640 NONE
JRI60_RS31645 NONE
JRI60_RS31650 7959153 .. 7959166 +  -2.3  -2.82987   CGTGAGTCGCTACCG               CACAG GCCC CTGGG                TGTCCTCGATGTTGC  40 70
JRI60_RS31655 7959723 .. 7959734 +  -5.8  -2.71364   AGTGGCCAGGACCGT                GACC GGCG GGTC                 TCCTTCCGCCCATGC  45 121
JRI60_RS31660 7960116 .. 7960159 +  -9.5  -3.24924   GACCCCCGAGGGGGC CGGG-GACACACTCACCGTG ACGTG CACGGTGCGCGGGTTGCCCG TGTTGTCCGTGGCGC  59 39
        modA 7961658 .. 7961674 +  -4.4  -2.78384   AATGAGTGAAGCGCG             CGTGAGC CGAA GC-CACG              TATAGTGCGCGCCCC  43 36
JRI60_RS31675 NONE
        modB NONE
JRI60_RS31685 7965902 .. 7965920 +  -4.4  -3.04792   TACGCCCCGTCGATC             CGCGCCAG GCG CTCGCGCA             TCTTCGGCGTGGTGA  45 138
JRI60_RS31695 NONE
JRI60_RS31700 NONE
JRI60_RS31705 NONE
JRI60_RS31710 7971218 .. 7971264 + -19.4  -3.29144   CGCGGTGAGCCATCA CCGGAACGCGGCGCCCCGAT ACACACC AGCCGGGCGCCGCGTTCCGC TTGTCACAGACCTCC 100 50
JRI60_RS31715 NONE
JRI60_RS31720 NONE
JRI60_RS31735 NONE
JRI60_RS31745 7979031 .. 7979065 +  -4.1  -3.14132   GAGGACGCGCGTCCA    GGCGGAGCGCTGACGT GGCC ACGCCCCTGC-CCGCC     TTCGTGGCGCGCCGC  45 13
JRI60_RS31750 7980021 .. 7980051 + -14.7  -3.21099   GGACCTCGTGAAGAA      GCCCGGCTCTCCCC AGGA GAGGAG-GCCGGGC       TTCGTCATGCGCGGG  76 30
JRI60_RS31765 NONE
JRI60_RS31770 NONE
JRI60_RS31775 7982401 .. 7982413 +  -4.8  -2.70932   CGCGGCCGTGGCCAG                CACG TTGAC CGTG                TCGTTGCCCAGCCAG  42 72
JRI60_RS31805 NONE
JRI60_RS31810 7991246 .. 7991260 +    -7  -3.61398   CCCACCGAAGAGTGA               GCCCGC TAC GCGCGC               TTCTTCGCCACCGGC  58 26
JRI60_RS31820 7993667 .. 7993681 +  -4.2  -3.17075   TCATGGCTCCCGGCC               TCTCGC CAT GCGACA               TTCCCTTCGACCCCC  45 111
JRI60_RS31825 7994456 .. 7994471 + -11.8  -2.78816   CGTCGCCCCACTCAC              GGCGGC CCTC GCCGCC               TGTCGTGCGAGCTCC  60 398
JRI60_RS31850 NONE
JRI60_RS31855 NONE
JRI60_RS31860 8011542 .. 8011598 +  -2.1  -2.78816   TGAACCGGGAAGCGC GTGG-C-CGGTCAGGTGGAGGCGCCGGC CCCC GTCAGCGCCTC-GCCGGGACGAGACCCC TCTCGTCCCCCCTCA  38 38
JRI60_RS31865 NONE
JRI60_RS31870 8013595 .. 8013610 +  -5.4  -3.62046   CTGGGCGGAGCTGCA              CACG-GC GAA GCTCGTG              TTCTTCGCGCACTCG  57 208
        proC NONE
JRI60_RS31890 NONE
JRI60_RS31895 NONE
JRI60_RS31900 8017624 .. 8017672 +  -3.9  -4.00868   TCCTTCGAAAAAACT ACAGCCCGCTCGTGGCTCGCCCTT CGAG GGGGGCGAGCCAA-A-CGG-CTGA TTTCATTGTCCCTCC  59 147
JRI60_RS31905 8018498 .. 8018539 + -18.7  -4.09864   GGGTCGGCGTTGTTT TCCGTGGGCGGACGTGCAC GTCG GTGCGCGTCCGCCCATGTC  TTTTCAGGCCTCCCT 100 250
JRI60_RS32110 NONE
JRI60_RS32115 8065057 .. 8065082 + -11.1  -3.18728   GCGAAGCGCTCGCCG         CCCTGCTCGAC GGGC GTTGAGCCGGG          TTCGCTCTTCGGGCT  64 6
JRI60_RS32120 8066249 .. 8066260 +  -7.2  -2.52795   TCGGCCTGAAAGCGA                GGCC CTCC GGCC                 TCCGTTAAGAGGATT  47 32
        hrpB 8068949 .. 8068971 + -15.6  -3.61715   GGTACCCTCACCCCG           TCCCTCTCCC GAA GGGAGAGGGG           TTGTTGGGGGACCTC  83 129
JRI60_RS32135 NONE
JRI60_RS32140 NONE
JRI60_RS32145 8072859 .. 8072877 +  -5.9   -3.7941   GTCCTTGAACGCCTC             GGCGTCG GGCAG CGAGGCC             TTCTTCTCCGCGATG  60 201
JRI60_RS32170 8076247 .. 8076278 +   -21  -3.45571   TGGCGCCTCAAACAG      GGCCCGATGTGGAC TCCG GTTCACATCGGGCC       TTCGTGTTTCCGGGC 100 30
JRI60_RS32175 NONE
JRI60_RS32180 8078806 .. 8078833 +  -2.7  -2.82623   CGAGCCGTTCGGGTT       C-GCCGGGT-ACG TCTC CGTCACCCGCCCG        TGGTTGTCCACGAAG  39 218
JRI60_RS32195 NONE
JRI60_RS32200 NONE
JRI60_RS32205 8087377 .. 8087396 +  -2.9  -3.15252   GCTCGTCACCCATTT            GACA-TGC CCTCA GCAATGTC            TTGCGTGGTTAGTTT  44 127
        hppD NONE
JRI60_RS32215 NONE
JRI60_RS32220 NONE
JRI60_RS32225 NONE
JRI60_RS32230 NONE
JRI60_RS32235 8093255 .. 8093266 +  -2.2  -3.03124   AAATGTCACAAAGAA                TGAC CCGG GTCG                 TCTTCCGGGGTGCGA  41 83
JRI60_RS32240 NONE
JRI60_RS32245 NONE
JRI60_RS32250 NONE
JRI60_RS32255 8096811 .. 8096824 +  -3.1  -3.25823   CGAACACCACGACAC               TGGGA ATCG TCTCA                TTCCTCTCCCGCCCG  46 47
JRI60_RS32260 NONE
JRI60_RS32265 8099386 .. 8099404 +  -3.1  -3.32963   GAATGCCCGGTCGGG             CTTCGTC ACCCG GATGGAG             TTCTGAGATGCCCGT  46 1
JRI60_RS32270 NONE
JRI60_RS32275 NONE
JRI60_RS32280 NONE
JRI60_RS32285 NONE
JRI60_RS32290 NONE
JRI60_RS32295 NONE
JRI60_RS32300 NONE
JRI60_RS32305 NONE
JRI60_RS32310 NONE
JRI60_RS32315 NONE
JRI60_RS32320 NONE
JRI60_RS32325 8110835 .. 8110850 +  -3.2  -5.60993   AGCACAGCTCTCGCT              CGGG CCACATCT CCCG               TTTTTTTGTGGCGGG  95 154
JRI60_RS32350 8118111 .. 8118139 + -10.2  -3.15544   TGATGGCTCCATCAC        CGAGCCTGCGCC AGGCC GGCGCATCCTCG        TTGATGCCCATCAAC  62 420
JRI60_RS32380 NONE
JRI60_RS32385 NONE
JRI60_RS32390 NONE
JRI60_RS32395 8130757 .. 8130789 + -13.3  -2.54276   GGGTTGTGGCGGGGA      CTCCGGTGGGCGAGG CTC CAGCACCCACCGGAG      GTGTTGATTGCACGT  67 68
JRI60_RS32400 8132691 .. 8132702 +  -4.4  -3.64703   CACCTCCTCGCCTGC                TTCC GCGA GGAA                 TTTCCCTCCAGGGAG  55 165
JRI60_RS32405 8134985 .. 8135006 +  -2.8  -3.34398   GGCCGGACGGCAGGA           GCCCTGGC GGGCGG GCCTGGGG            TGTTTGCGGCCGCAC  46 73
JRI60_RS32410 8136171 .. 8136213 + -20.6  -2.71011   AGTGGGGACGGAAAA GGCGAAGGGCCCGGAACC TCCCATC GGTTCCGGGCCCTCCTCC TACTTCACCCGAACT  95 39
        metF NONE
JRI60_RS32445 8149476 .. 8149494 +  -4.4  -2.97475   ACAGCACTTCACCTA             GCGGACAC GCA GTGCCCCC             CTTTATCCTCGCCGC  45 25
JRI60_RS32450 NONE
JRI60_RS32455 8150959 .. 8150969 +  -2.4  -3.78778   CACCGACGTCCCAGA                 GTCG GTC CGTC                 TTCTTCGTCTCCTCA  54 45
JRI60_RS32460 8153698 .. 8153735 +  -4.7  -2.62616   TGTGCCCGTGCGTCA   CCCGGGACTGGAGCATGG CGT CCCT-CGCCAGTGCCGCG   TCGTCTCCCCGATGC  41 462
JRI60_RS32470 8157256 .. 8157283 +  -2.6  -3.01791   TCCTCCCGGAGCAGA        T-CCCGCTCCGGA TCA TCCGAGGCGAGCA        TCTTCGCGAGCACCT  41 354
JRI60_RS32490 8165533 .. 8165545 +  -4.8  -3.35679   GATGACGAAGCCGGC                CTCC GTCTG GGAG                TTGTCCGTCCAGCGC  51 153
JRI60_RS32515 8173199 .. 8173209 +  -8.2  -3.14564   CCTTGAGCTTGCCGT                 CCGG CAT CCGG                 TTCATCCCGACGTCG  56 158
JRI60_RS32525 8175189 .. 8175199 +  -8.2  -3.32268   GGACGCCCAGCACGC                 CGCC CAG GGCG                 TTCTGGAGGTACTTG  58 484
JRI60_RS32545 NONE
JRI60_RS32555 NONE
JRI60_RS32560 NONE
JRI60_RS32565 8184545 .. 8184577 + -12.8  -2.59447   CAACCGACGAGCGCC     CCTCACAGTGCCGTG GCTG CACGGCAC-GTGAAG      ATATTCTACTTCCGA  64 85
JRI60_RS32600 NONE
JRI60_RS32605 NONE
JRI60_RS32610 NONE
JRI60_RS32615 8194155 .. 8194187 +  -3.4  -3.04144   GGGCCCGTGGATGTC      CCCTCTCCCT CTGGGAGAGGGCT AGGGTGAGGG      TCTTCCCCCTGGAGC  42 64
JRI60_RS32680 8210599 .. 8210626 +  -5.4  -3.05384   CCTCGACCACGTCGC        CGAGAACGCTCA CCCC TGAGCGGCCCCG         TTCAGTCCCCGCGCA  47 7
JRI60_RS32700 8215260 .. 8215297 +  -6.2  -3.28924   ACTGGGGCTTGCCCT   CGTCCTGGAGGACCAC GAACCG GTAGTTCTCCAGCTCG    TTCTGGCCCGCCGTG  53 83
JRI60_RS32745 8226204 .. 8226219 +  -4.6  -2.79796   AAGGCCTGACCTGGC              GCGAGG TGGA CCTCCC               TCTGGTACCCTCCGC  43 32
JRI60_RS32750 8228724 .. 8228748 +  -4.1  -3.61398   GCCGTCCCGGAACAC          GTCCAGCACCG AGG TGGTGCCCGGC          TTCTTCAGCGCCACC  55 446
JRI60_RS32775 NONE
JRI60_RS32780 8241721 .. 8241750 + -22.9  -2.94912   AGGTGAGGTTCACCG       GCCGCGCGTGGCT TCCG AGCCGCGCGCGGC        TGTGTCGATTCCGGG 100 40
JRI60_RS32790 NONE
        glnE NONE
JRI60_RS32800 8247783 .. 8247796 +  -5.2  -3.53012   CTGGAAGAAAACCTC               GGGG CCGTCT CCCC                TTTCCGACGACGAGG  54 69
JRI60_RS32805 NONE
JRI60_RS32810 8250235 .. 8250270 + -10.3  -2.73364   CCTCCGCCCGTTGTC    CCCGCTGGTCGGGCT CATCAC GGTCCGACCCGCCGG     TCCTTGCCGTGAGCC  57 91
JRI60_RS32815 NONE
JRI60_RS32820 NONE
JRI60_RS32825 8254007 .. 8254017 +  -6.8  -3.78934   GAACTCACCACTTCT                 GCTC AGG GAGC                 TTCTTCTCGCGGACA  64 207
        ssrS NONE
JRI60_RS32850 NONE
JRI60_RS32855 8258087 .. 8258125 +   -19  -2.71712   GGGCCTCTCTGGCAA   CGTTTTCGGATAGGGTGC GCT GCGCCATGTCCGAAAACG   CTTTGCGCAAGGCGA  87 53
JRI60_RS32860 8259589 .. 8259599 +  -8.2  -2.70932   CCACCACCGAGAGCT                 CGGC CAT GCCG                 TCCTTGCGAGCGACG  51 239
JRI60_RS32870 NONE
JRI60_RS32875 NONE
JRI60_RS32880 8269012 .. 8269030 + -10.2  -2.83012   CTCGTCGTAGTCCTC             CGGCAGCG GGC CGCTGCCA             TGTCGTGCTCCCCTT  59 57
JRI60_RS32885 8270054 .. 8270087 +  -9.5  -3.34715   CGTGTTGCGCATGCT     CCCTCTCCCTCTG GGAGAGGG CGGGGGGTGAGGG      TATTTCACCCCCGTG  61 42
JRI60_RS32890 NONE
JRI60_RS32895 NONE
JRI60_RS32900 8273768 .. 8273820 +  -4.1  -3.48593   CGACGTCGATGTTTC GCAGCGCCCGCATC-TCGGGGATGT CTTCC GTGTCCCCGGCGATGTAGACGC-GC TTGTCTCCGAAGGTC  51 238
JRI60_RS32910 8275931 .. 8275951 +  -5.4  -2.62184   GGGCGGGCGGAGCGC            GAGCGGGT TACAC ATCTGCTC            TCATGTCCGGCCGAA  44 60
JRI60_RS32915 8277176 .. 8277191 +  -6.1  -3.38768   CAGCAGCGGGCGGAA              GTGCG GGTGCG CGCAC               TTCTCGATGATGTCC  53 159
JRI60_RS32930 8285604 .. 8285625 +  -5.7  -3.25823   CCAGCGCACCTGGGC           CCCGGTGCT CCCG AGCTCCCGG            TTGATGTGCCCCACG  49 137
JRI60_RS32945 NONE
JRI60_RS32950 NONE
JRI60_RS32955 8293482 .. 8293502 +  -6.7  -3.59979   CCAGCTCCGTCTCGC            GGGCTCCCC AGT GAGGAACCC            TTTACCCTCACCCCA  58 12
JRI60_RS32965 NONE
JRI60_RS32970 NONE
JRI60_RS32975 8299930 .. 8299946 +  -6.5  -2.76263   GAGGGGGGGGCGTCA              CCTCTAC CCG GGAGAGG              TCCTTCCGTCCTGCC  47 170
JRI60_RS32980 8300524 .. 8300556 +  -7.7  -2.85668   GGGGCAGGCAGGTCC     CCGCCCGCCCCGGGG CGGAA TTCC--GGCGGGCGG     TCTGCTGTCGAACTG  52 70
JRI60_RS32985 NONE
JRI60_RS32990 8303585 .. 8303600 + -10.4  -2.86164   TCCACGCCGTGCTCG              CGGAGC GCCT GCTCCG               TCTCCTCGTTCAACG  59 259
JRI60_RS33025 8326760 .. 8326783 +  -5.1  -4.08216   CTGGCGACCCGCGCC          CTCCGGGGC TATCCT GCCCCGGCC           TTTTCCAAGGAGTGC  64 57
JRI60_RS33030 8327064 .. 8327105 + -18.7  -3.36327   CACTTCCGAACCCCG CGCCCGCTCGGCC-CGCCCT CCT GGGGTGAGGCTGAACGGGCG TTGTCGCTCCAGTAC  93 51
JRI60_RS33065 8333885 .. 8333908 +  -7.4  -2.71364   GCGAAGTCATGGGTC          GGCGTCCG CCCTCATC CGGACGTC           TGGTTCGAGGAGTCC  51 51
JRI60_RS33070 NONE
JRI60_RS33075 8336218 .. 8336231 +  -3.1  -2.79321   ACAGGGGACCTGACC               GATGCG ACG CGC-TC               TCCTCTTGCTGTGGG  40 28
JRI60_RS33080 NONE
JRI60_RS33085 NONE
JRI60_RS33090 8338883 .. 8338897 +  -3.4  -3.09516   TGAGAGGACAAGAGC               GCCTCC CAG GGGGCC               TTCCATGGTGGACAC  44 154
JRI60_RS33095 NONE
JRI60_RS33100 8340994 .. 8341024 +   -11  -3.04144   ACGAACTTGCCGACC       CCCTCGGTCCGGGT CGA ACCCGGCAGGAGGG       TGTTGACGGTGACCG  60 247
JRI60_RS33115 NONE
JRI60_RS33150 8350582 .. 8350594 +  -6.2  -3.29263   ATCCGGGAAGGGATA                CCCG GCACA CGGG                TTGTAGGCGCGCTAT  53 58
JRI60_RS33155 8351403 .. 8351428 + -18.3  -4.54727   GTTGGACGAGTCCGG         GGCGGTGGGCT TCGC GGCCCACCGCC          TTTTCATTTGGGGAG 100 51
JRI60_RS33160 8352370 .. 8352386 +  -7.2  -3.61398   GGCTTCTTCGACTGA              GGCCGG TCTAC TCGGCC              TTCTTGCGCGAGAAC  58 26
JRI60_RS33170 8356136 .. 8356159 + -18.2  -4.63218   TCGCTTTTCCACCAA          GCCCCAACGG GTAA CCGTTGGGGC           TTTTATTAAGCCCAC 100 85
JRI60_RS33175 8358420 .. 8358453 +  -7.5  -3.88438   ACATCTCGTGTCTAA     CTCAGCTGCAG-CAAT ATG AGTGACTACAGCTGAG     TTCTCTTTGCTATCC  66 26
JRI60_RS33200 8366932 .. 8366942 +  -8.2  -3.17527   AGGTCGCATAGGGCG                 CCGC ATG GCGG                 TCTTCCTCGTGAATC  56 454
JRI60_RS33210 NONE
JRI60_RS33215 NONE
JRI60_RS33305 8393245 .. 8393264 +  -6.3  -2.88663   ATGCACCGGAACCGC            GGCCCCC ACTGGC GGGGCCC             TCTCTCCCGCTCCAT  48 84
JRI60_RS33310 NONE
JRI60_RS33315 NONE
        pssA NONE
        thiD 8398460 .. 8398474 +  -6.4  -3.05384   GCACTTCTTCCCGCT               GCTCGA GGA TTGAGC               TTCCGTCACCCGGCG  49 13
JRI60_RS33340 NONE
JRI60_RS33345 8401565 .. 8401579 +  -2.8  -2.64099   CTTCACCATCCGGCT               TCCC GTCGCCA GGGA               CTTCTACTGACGGAC  39 1
JRI60_RS33350 NONE
JRI60_RS33355 8402691 .. 8402716 +  -4.5  -3.30243   GCTGGGCTCCGGCGT         GGACCCCCCTC CCCC GAGGTGGTCCC          TTATCCCACATGCCT  49 49
JRI60_RS33360 8404140 .. 8404156 +  -5.1  -3.06915   CCGGGCTCCGTGCCG              CACAACC CAA GGTTTTG              TTCCATGCCCTCCCT  47 108
JRI60_RS33365 8406523 .. 8406541 +    -3  -2.70498   CCCGATGCCCGAGGT             GGCCTCCA CGA TGAAGCCC             GTTCTCTCCAGTCTC  40 144
JRI60_RS33370 NONE
JRI60_RS33375 NONE
JRI60_RS33380 8411028 .. 8411053 +  -5.4  -3.23692   GGCTACCGCCTGGAG         GTGGAGGGGTG ACGAG CACCC-TCCTC         TTCCTGCTGCTGCTG  51 14
JRI60_RS33385 8411919 .. 8411945 +  -4.3  -3.18264   GGGATGGTGGGAAGA         GTGGCCGTGGA CGACA TCCACCCCCGC         TTCGTCGATGAGGGC  47 336
JRI60_RS33395 8414021 .. 8414057 +  -8.7  -4.07568   GGCCACCCGCAGGCG    CGCCTGAGCCGGA TTTAACCCTTC TCCGGCTCGGGGG    TTTTCAAGGACAGGA  72 19
JRI60_RS33400 8414923 .. 8414933 +  -3.2  -2.70298   GCCGGGGAGACGTTG                 CAGG CAT TCTG                 GTTCTCATTGCCCGC  40 445
JRI60_RS33435 NONE
JRI60_RS33440 NONE
JRI60_RS33445 NONE
JRI60_RS33450 NONE
JRI60_RS33455 8428747 .. 8428772 +  -9.8  -4.28254   CCAGCCTCGAAAGGA         GGAGTAGG-CC GCGTG GGACCTACTCC         TTTTCGATCTTCAAG  85 49
JRI60_RS33500 8445414 .. 8445470 +  -8.7  -2.78384   TGACTTCCTCCTCGG C-CGTGGCTTCCTCCTCGGGGGTGGGC AGCAC GCCT-CTCTCAAGGGGGAAGGCGCGCG TCTCCTGAGGGGCGG  51 66
JRI60_RS33520 NONE
        tnpB NONE
JRI60_RS33530 NONE
JRI60_RS33535 8451717 .. 8451734 +  -5.5  -2.70932   CTGTCTCGGCCGAAA             GCCGC ATGATTGA GCGGC              TCGTTAGCCCAAAAA  45 17
JRI60_RS33540 8452691 .. 8452701 +  -2.4   -5.0538   CGGTGATGGCCCACG                 AGCC CCC GGCA                 TTTTTTGGCCTCCGC  79 72
JRI60_RS33555 8455771 .. 8455792 +  -5.7  -3.30124   CTCGATGGGAAAAGC           GCGCGTCTC CTGA GGGGCGGGC            TTCTCGCGCATGAGG  51 516
JRI60_RS33620 8473943 .. 8473969 + -13.7  -3.36515   CCGGAAAATGAAAAA         GCCCCCGAGTC ACTTG GACTCGGAGGC         TCTTTCGGAGTGCCC  77 42
JRI60_RS33655 8481477 .. 8481492 + -11.8  -3.29727   GCTGAAACGAAAAAA              CCGGCC CTCG GGCCGG               TCTTCCTTGCTTGCC  68 36
JRI60_RS33665 NONE
JRI60_RS33670 8484149 .. 8484198 +  -5.1  -3.08679   AGGGTCCAACCTGGT TCCTCACCGTGCATGCCCCCTCTC CCCCT GGGAGAGGGC-TG-G-GGTGAGGG TCTTCCCTCCCCCGC  49 97
JRI60_RS33675 8485522 .. 8485536 + -11.4  -3.38991   GCACGGCCCGGAGCA               CGTCCG GCA CGGACG               TCTTGTTCGCCCGGT  67 68
JRI60_RS33685 NONE
JRI60_RS33690 8489834 .. 8489846 +  -3.3   -3.8211   GCGCACGGCGTCCTG                GAGCG CCT CGGTC                TTCTTGTAGGTGACG  56 246
JRI60_RS33710 8494449 .. 8494468 +    -5  -3.17075   GCTGGAGTTGGAGCC            GGTG-TGAG CCC CTCGCCACC            TTGCGTTCCCCACCG  47 43
JRI60_RS33715 8496169 .. 8496184 +  -2.4  -2.78032   GGGTTGGATCGTCAA              CCCGCG GACA TGGGGG               CTCTTTTCAGAGGGC  38 246
JRI60_RS33720 8496547 .. 8496573 + -18.1  -6.09196   AACCCGCAGTAACAC         GGCTCAGCCTC TTCGT GAGGCTGAGCC         TTTTTTTGTTTTCCG 100 57
JRI60_RS33730 8498483 .. 8498503 +  -3.8  -3.28712   GCGCACGCCACCAGC            GCGTCGAG CAGCT CCCGCCGC            TTGTAGCGCGCCGCG  47 85
JRI60_RS33755 8504223 .. 8504262 + -13.6  -3.17194   CGTCCACCCGATACC  CTCACCCTGTCCCTCTCCC GGA GGGAGAGGGG-GGGTTGGG  TTGGGTTCAGCGCGT  72 50
        polX NONE
JRI60_RS33775 NONE
JRI60_RS33780 8508930 .. 8508945 +  -5.4  -3.74077   CGCTCGAGGAAGAGC              GCGAAGG CCA CCT-CGC              TTTCCGTCTCTCCGC  60 448
        dnaK 8511610 .. 8511623 +  -3.8  -2.73124   CGCGCCCCACCGCCA               GCTC ACTCCC GAGC                GTTTCGCCCGTACGC  41 459
JRI60_RS33795 NONE
JRI60_RS33800 8513614 .. 8513627 +  -3.7  -3.28712   TGGAGCGCAGACCGC               GAGCC CCCA GGCCC                TTGTCCACGGAGAAG  47 181
        speA 8516818 .. 8516846 + -14.6   -4.1891   ACAGCTGTAGCGAGA       GCCCCG-GGCACC CTCA GGTGTCGCGGGGC        TTTCTCTTGGAACGC  95 58
JRI60_RS33815 8518911 .. 8518928 +  -6.9  -3.01712   CGCGTCAACACGGGC             TGCTCGG ACAC CCGGGCG              TCTTCGCCACCAAGA  51 51
JRI60_RS33835 8524424 .. 8524453 +  -7.2  -3.57462   GAGGTGCAGCCGGGT       GGACTCGTTCAGC ATGAA GCTGAA-GAGCCC       TTTCACCATCCCCTC  58 237
JRI60_RS33875 NONE
JRI60_RS33880 8533355 .. 8533388 +  -9.5  -3.31792   GCGCGCCACCTTGAA     CCTGGCGGTCAGC ACCGTGAG GCTGTCCGCCACG      TTCTGGAGATCCTGC  61 96
JRI60_RS33890 NONE
JRI60_RS33895 8536122 .. 8536156 + -17.9  -2.74605   GCTGGTGCCGGCCCC    GGGCCCCGCGAACCTC CTCG GAGGTG-GCGGGGCCC     TCGCTTTTGCACCGG  85 54
JRI60_RS33900 8537535 .. 8537546 +  -7.2  -3.36327   GAAATGCCCGTTCCG                GCCC ACCG GGGC                 TTCTGCCTCGCGTAA  56 39
JRI60_RS33905 8538160 .. 8538170 +  -2.4  -2.82516   CTTCCGCGGCCCCGG                 CACC AGC GGCG                 TCTCCTGATCGCCCG  40 7
JRI60_RS33910 NONE
JRI60_RS33915 8541322 .. 8541335 +  -3.7  -2.88544   CGTGAGTTCGGCGCT               CCCAG GGTC CGGGG                TCTCTGACAATGAAG  43 5
JRI60_RS33920 NONE
JRI60_RS33925 8543645 .. 8543697 + -21.3  -3.53444   CCCGGCGGCTCCCGC CGGCTCCCGGCCCGCCCTCC-CCGC TCCTC GCGGTGGACGGCGGGCCGGT-GTCG TTTCGGGGGGCGTGC 100 45
JRI60_RS33930 8544145 .. 8544185 +  -7.3  -2.65815   AAGCCGACGACTGAG  CTCCACACGGAGCCCGCCT CCC GGGCGCGCTCCGCGCGAAC  TGGTCTGACTGTCAG  47 27
JRI60_RS33940 8548266 .. 8548298 +  -4.7  -2.78816   GCAGCAACCGGAGGC     GGG-GAGGCGCCGC GGCCAG GTAGCGCCGCACCC      TGTCCTGGAGCGTGG  42 508
JRI60_RS33985 8553627 .. 8553649 +  -5.5  -3.30124   TGTCCTCGGGGCCCA          CCTGCCGCGC CATG GC-CAGCAGG           TTCTCCGCCGTGGGC  51 286
JRI60_RS34025 NONE
JRI60_RS34030 8563798 .. 8563855 +  -8.3  -3.09803   AGCCCCTCCCCACTC CGCGGTCACTCACCTCAACCGGG-GC AACGCGG GCACGCGATTGCGGTGGGTGCGCGCG TATTCGATGAGGTTC  56 54
JRI60_RS34060 NONE
JRI60_RS34065 NONE
JRI60_RS34070 8571151 .. 8571179 +  -5.1  -2.88249   AATCCCCTCTCCCAG        GGGAGAGGGTCCA ACC TGGTTCCTCACCG        TGTATGCCCCCTCTC  46 42
JRI60_RS34075 8572170 .. 8572198 +  -5.2  -3.65046   GAGTCAGCCGGATGG        ACTGCTCGCG CAGCCAGAC CGCGAGCGGG        TTCTTCCACTGCCCG  57 112
JRI60_RS34090 8575645 .. 8575662 +    -4  -2.90992   CGCTCTCATTAGGGC             GGGCCG TCAATT CGCCCC              TGATTTCAAGGAGTT  43 87
JRI60_RS34095 NONE
        murQ 8577222 .. 8577232 +  -2.4  -3.31144   ACCTGCCCAGCGCGG                 GCCG GAG CTGC                 TTCTGCGACTCGAGC  45 422
        gstA 8580854 .. 8580875 +  -5.1  -3.06969   TAATCCACCCGTAGG           CAGCCCAGGT GGC ACC-GTGCTG           TATTCGGCTCCCTTC  47 38
JRI60_RS34120 8582382 .. 8582395 +  -5.2  -2.50016   GCAGCAACAGCTGGA               GGGG CTCGCT CCCC                GTGTTCGTCATCACC  43 176
JRI60_RS34135 8584935 .. 8584962 +  -6.8  -3.96148   CCCGGCAGCACCCGC        GGCCGCCTCGCC TGGC GGGGAGCCGACC         TTTGTGCTGACCAAG  66 41
JRI60_RS34140 NONE
JRI60_RS34145 8587631 .. 8587645 +  -5.6   -3.6579   CTCCCCTCCTCCCAG               TCGGCG AGG CGCGGA               TTCTTGGAATGAATT  57 309
JRI60_RS34150 8587952 .. 8587982 + -22.6  -3.53012   TCCAGTCCCAAGCTC       GTGCGCGCCCCGCT TTC AGCGGGGCGCGTGC       TTTCCGGACCCGAGA 100 51
JRI60_RS34155 8589354 .. 8589375 + -13.7  -2.89564   CGCGAAGCATTGCAA           CGTCGTCGC GGGA GCGACGGCG            TATATGGGATCGCAG  71 277
JRI60_RS34160 8591309 .. 8591319 +  -8.2  -3.16564   ACTCCAGGTCCACCG                 CCGC CAC GCGG                 TTGGTGAACTGCACC  56 452
JRI60_RS34190 8597092 .. 8597129 +  -6.9  -2.78384   GAGCACCGCGTGAGC   GCCTCCAGCGATGACCAC GTG GTGGCCG-CGCTCGAGGG   TCTGCTCCGCGGCGC  46 227
JRI60_RS34200 8599417 .. 8599448 + -12.2  -2.60075   TCCACCCTTCTTCTG      CTCCGCCCCCGCTC GAGG GAGCCGGGCTGGAG       GTTACTTGCCGCCAG  64 61
JRI60_RS34210 NONE
JRI60_RS34215 NONE
JRI60_RS34220 8602527 .. 8602557 +  -5.5  -3.53012   TGGGGGCCACGTCCA      CCGGGTC--TATCTC CTG GAGGTACAGGCCCGG      TTTCACACCCCGGCC  53 168
JRI60_RS34230 8605366 .. 8605384 +  -2.2  -4.57837   GAGCACCACTCAGCG             CACGGCGC TCA GCCTCGAG             TTTTTGACACCGTCT  70 272
JRI60_RS34235 8607792 .. 8607820 + -13.2  -3.05384   GCCTGATCTCCAGGG       GCCGGCTCGAGGG GGAT CCTTC-AGCCGGC        TTCCCTGGCCCCGGC  70 78
JRI60_RS34245 8609580 .. 8609594 +  -3.4  -3.40403   TGCTCTGGCGTCTTG               GGCAGG ACT TCGGCC               TTGTGCTCGAGGCGC  48 114
JRI60_RS34270 8615234 .. 8615266 +  -2.6  -4.44819   AAGGCGTCCGAGGGC     CCGGCCCACGACGTC TCCA GGTTTC-TCGGCCGG      TTTTCCTCTCTTCTC  67 94
JRI60_RS34285 NONE
JRI60_RS34290 8617728 .. 8617744 + -10.1  -3.85817   GCATGCGCACAGCTA              CTCCCGG GAC CTGGGAG              TTTCTCCCGCCGCCT  74 42
JRI60_RS34295 8618308 .. 8618338 +  -2.5  -3.31428   AAGCCCCAGCTCGGT      GGAAGCGGGG-AGA GTTC TCGACCCAGTTTCC       TCTCTTCTCTTTCCC  44 86
JRI60_RS34305 8621705 .. 8621745 +  -3.2  -3.07895   AGGAGGCTGGCGACG CCCGAGGCGGCCCTCGA GTCCTCCA TGGAGAGCC-CCTCCGG  TCTGTTCCGCATCGA  42 133
JRI60_RS34310 8622540 .. 8622552 +  -3.3  -2.63182   CAGGCCCTACCTATT                GGCTC CCA GACCC                GCTTTTCTGTTACGA  39 87
JRI60_RS34315 8623452 .. 8623498 +  -2.9  -3.75024   CGAGTTCGTGGCCGC GAAGTAGTCG-CGGCCACCGGGC CCC GCCCGCCC-CTGCCGCCTACTTC TTCTTGATGGTCAGC  53 19
JRI60_RS34325 NONE
JRI60_RS34330 8627089 .. 8627103 +  -3.4  -3.78934   CACCCACCCCACGAA               GGTCCC GGC GGAGCC               TTGTTCTGAAAGGCC  56 243
JRI60_RS34345 8631304 .. 8631315 +  -7.2  -2.57132   GTCCACCCAGAGCTT                GCGC AGGG GCGC                 CTTGTCGGGCCCGCC  48 436
JRI60_RS34355 8631969 .. 8631980 +  -5.8  -3.14132   GCCAGCACGTCATCC                CGAG GCAG CTCG                 TTGGTGAGCCCCACC  49 162
JRI60_RS34370 NONE
JRI60_RS34375 8635354 .. 8635364 +  -5.4  -3.06737   GTTCGTGTCACTGAG                 TGTC CTG GACA                 TGTTCACCATTGGTA  47 199
JRI60_RS34380 NONE
JRI60_RS34385 8637560 .. 8637584 + -15.7  -2.60244   CCATACCCTCACCCC          GTCCCTCTCCC AGG GGGAGAGGGTC          TGACTTGATTCCACA  74 173
JRI60_RS34395 8643038 .. 8643049 +  -7.2   -3.2794   AGCGGAGCGGGAATA                CCCG CCTG CGGG                 TTGATGTGGGTGAAG  54 476
JRI60_RS34405 8647278 .. 8647307 + -13.5  -3.04144   GAACCCTGGAAATGC       GAAGGAGCGCCCC ATGC GGAGCGCTCCCTC        TCTTCAAGGTCCGCG  70 46
        rpoH 8653060 .. 8653105 + -14.8  -3.53224   AGCCGGTCCGAGGTT CTTCC-CGCGACGGTCCGGTCA GCCC TGACC-GACCGTCGCGCGGCCG TTTCCGGCGCCCGTG  81 43
         cra 8659902 .. 8659923 +  -6.6  -2.91681   CCCCGAGCGTCTGGT           GTCCGACGG CTCTT CC-TCGGAC           TGTCTGGCATTCCAC  48 72
JRI60_RS34450 8661259 .. 8661280 +  -4.3  -3.72576   CTGCTCACCGGAGAA           GCCGTCG AGCACCGG CGCCGGC            TTTCCTCCCAGCGAC  55 298
JRI60_RS34460 NONE
JRI60_RS34465 8667255 .. 8667306 +  -7.1   -3.1211   AAGTAGTCGGAGATG GACCGGGAGGTGAGCGAGGGGTT CTTCAA ATCCCCTTGCTCGACAAACGGTC TTCCCTACTCTCCTC  52 35
JRI60_RS34470 8668456 .. 8668488 + -17.1  -3.57462   CTTCACGCGCTGACC     CGGCGGCTGGAGGC CCGAGA GCCTCCAGCC-CCG      TTTCCCCGTCAGGTC  89 28
JRI60_RS34480 8673076 .. 8673096 +  -9.7  -3.14132   CGCGCTCCGGACGAA            CTGGTCCGA CAG TCAGACCAG            TTGCTCCCGAGCGCG  59 111
JRI60_RS34485 8674176 .. 8674224 +  -2.9  -2.91264   CCGTGAGCCTCTCCC AGAGGGCCGGGCCACATCCTC ACGAGCG GAGGATGTGACCCGGGACGAG TGTGTGGATGGCGGC  41 35
JRI60_RS34490 NONE
JRI60_RS34495 8676624 .. 8676665 + -13.8  -2.74192   CCCGACCGGGGAACC GGGATACTGGGTGCGAGAA CCCTC TTC-CGCACCCGGAGTCCC TCATGTTCCCGCATC  69 55
JRI60_RS34500 8678340 .. 8678376 +    -5  -3.51924   CTCGCGTTCGGCGGT   GTTCG-GGCGCACGTAC TCCA GTCCACGCGCCGCGAGC    TTCTCTGGATAGAGC  51 306
JRI60_RS34510 8679777 .. 8679803 +  -5.9  -3.53224   GTAGCGCTTCTCCAC        CTCGTGCTCGCGC CAG GCGCGGG-AC-AG        TTTCGCCGCCGCGTC  53 467
JRI60_RS34520 8680625 .. 8680648 +  -7.3  -3.28924   GCACAGCGTCGTACT          GTCCGGGCC CCTGGT GTCCCGGGC           TTCTCCAGAGAGGTG  54 64
JRI60_RS34525 NONE
JRI60_RS34530 NONE
JRI60_RS34535 8685023 .. 8685044 + -11.5  -3.39449   AATCGGCCCAGGACC           TTCGCGCGG CAAG CCGCGCGCA            TTCATCTTCATCACA  70 122
JRI60_RS34540 8686173 .. 8686193 +  -8.9  -3.22223   GGGAACAACAAGGTC            GCCCTCGAG TGA CTCAGGGGC            TTGCTCGTGGGATTC  58 65
JRI60_RS34560 8691049 .. 8691068 +  -7.8   -2.5474   TCTCGCCGGGGTGTG            CCTCGAGC CAAC GATCGAGG             GTCTTGTGCATGAAC  48 483
JRI60_RS34585 8695813 .. 8695823 +  -2.4  -2.79183   GCTCGGGCCGGGTAT                 GCGG GTG CCCC                 TGTGATGGCGCTCAC  38 92
JRI60_RS34590 8696998 .. 8697009 +  -7.2  -3.23216   GAGCTGGCTCACCGC                GCCG CCGC CGGC                 TTCGTAGTAGTCGAG  54 73
JRI60_RS34600 NONE
JRI60_RS34605 8701499 .. 8701509 +  -2.4  -3.14132   GCTTGCGGCCCGTCG                 CCAG AAT CCGG                 TTCATCGACGACAGC  44 349
JRI60_RS34615 8704060 .. 8704111 + -22.9  -2.70932   AAGCGTTGAAAGAAT AGAGGCCCCGCCCCGGCGTCCCC CCCTCC GTGGACGCCGCAGCGGGGCCTCC TGCTTCACCGGACGG 100 32
JRI60_RS34630 8708872 .. 8708896 +  -9.9   -2.9176   GAATACCCTCACCCT          GACCCTCTCCC AGA GGGAGAGGGGA          TATATGGCTACGGTT  59 75
JRI60_RS34670 8719025 .. 8719038 +  -3.8  -2.78384   CTCACCGCGAGGAGA               CGTC CAGCGC GACG                TCTCCTCCACCCCCC  41 53
JRI60_RS34695 8723744 .. 8723783 + -20.1  -3.21276   GTAGCCCCTCGACAG GGGCCCGCACG-CGGGGGT GGAC ACCTCCGGCG-GCGGGCCC  TATTCTCCCCCGCGA 100 37
JRI60_RS34700 NONE
JRI60_RS34705 NONE
JRI60_RS34710 8724474 .. 8724501 + -21.4  -3.66908   TCACTCGTAGCAAAG        GCGCCCACCTTC TTGG GAAGGTGGGCGC         TTCGTTTTCCGGCCC 100 35
JRI60_RS34715 8724584 .. 8724623 + -20.8  -4.08767   ATCCCGGCAGGGTCA  CTGAGGCGCCCGCTTCTC GCAA GAGAAGCGGGCGCTTCGC   TTTTGCGGGCATCGC 100 23
JRI60_RS34725 8726378 .. 8726399 +  -8.7  -3.21099   GATGGACAGACCCAG           GCCGGTG CCGATACC CACCGGC            TTGGTGGTGAAGAGC  56 123
JRI60_RS34740 8728652 .. 8728701 +  -4.9  -3.79906   TGAGGGCGCGCTTGC GGGCCCGCTCGGCCAGGTCGCGC GCCTCG GCG-GAGATGGCCGA-CAGCCCC TTCTTGTCCGCGTCG  58 376
JRI60_RS34780 NONE
JRI60_RS34785 8741458 .. 8741513 +  -5.9  -3.53091   GAAGTGAAGCGCCCC GTTCC-CAGCGGGGCGCAGGGAGAGG AGCGG CTTCCCCCGCCGCCCCTTGGAGGGAC TTTGAAGAAAACGCT  56 55
JRI60_RS34790 8743081 .. 8743110 + -21.5   -4.4261   GACTCGCGCCACCGA       GGCCTCGGGTTCC GCGC GGAACCCGGGGCC        TTTTCATGTTCACGA 100 53
JRI60_RS34795 8743725 .. 8743749 +  -2.7  -2.91264   TGTCGACCCAGCCGC          CGGTCCGGAAA CAA TTGCAGGACGG          TGTCTCGATCGGGCA  40 191
        trxA 8755696 .. 8755716 +  -7.5  -3.68222   CCGCCGGCTCACTCG            CCCCGCC ACGAGTC GGTGGGG            TTGTTGGCCTTGAGC  63 92
        mgtE 8758224 .. 8758246 +    -9  -3.14564   ACTGCGGAGGGCCAT           GCTGGAGGGC GTT GCCCACCAGG           TTGGTGACGACCTGG  56 302
JRI60_RS34890 8766930 .. 8766959 + -18.5  -3.41962   CGGACCTCTCGACCA       GGGGGCGTCACCC TTCG GGGCGGCGCCCCC        TCTTCATTTCTTGCC  93 58
         maf NONE
JRI60_RS34905 8769364 .. 8769394 +  -5.4  -2.75481   GCGAGCGGGCCTGAA      GCCG--AGGCCCCC CGCCC GGGGGCCTCACAGC      TCCTTGAACTTGAAG  45 27
JRI60_RS34915 NONE
JRI60_RS34920 NONE
JRI60_RS34925 8773631 .. 8773681 +  -3.7  -3.46602   GACGGAGCGGATCGC CCCCCGC-GCGGCGCAGCGTCGCGG GGG CGGCAACGAGG-GCGGCAGCGGGTG TTGTCATGTGCGACA  50 326
JRI60_RS34965 8785761 .. 8785779 +  -5.8  -3.06183   CCGTCTCGCCCGTAG             GCCCCTCG GAT CGTGGGGA             TTCCGTGCACCTGCA  47 427
JRI60_RS34980 NONE
JRI60_RS34985 8789840 .. 8789853 +  -4.5  -3.28712   GCGCGGGGAAGTAGG               CGTCG AACG TGACG                TTGTGCGGAGACACC  49 340
JRI60_RS34995 NONE
JRI60_RS35020 8801484 .. 8801502 +    -3  -3.13403   GGCTCTCGGTCCCCT             GCCGGG GACTCAG CCCAGC             TCTTCGTGGCAAGAC  44 42
JRI60_RS35030 8802603 .. 8802619 +  -9.3  -3.96624   GCAGTGCATTTCATG              GCGAGGC GAC GCCCCGC              TTTGTCCTCAACCTC  73 83
JRI60_RS35040 NONE
JRI60_RS35045 8805254 .. 8805281 +  -5.4  -3.15427   ACGACGAGGAATGAA        TCAACGTGGCCC TCGC GGGCCACGGGAA         TTCATGAGCCCTGTT  49 27
JRI60_RS35070 8810684 .. 8810708 +  -7.8  -3.37882   AAACACATCACCCGT          CACCTTCTCC TTGCT GGCGAGGGTG          TATTCATTGTTCTTG  55 487
JRI60_RS35090 NONE
JRI60_RS35095 NONE
JRI60_RS35100 NONE
JRI60_RS35105 NONE
JRI60_RS35110 8819803 .. 8819815 +  -5.5  -2.83747   GTCCTCGGTCTGCGA                TTGGG CCG CCCAG                TAATTGTAGCCGTTG  44 516
JRI60_RS35125 8824998 .. 8825018 + -15.5  -3.14132   TGCGCTCCGGACGAA            CTGGTCCGA CTG TCGGACCAG            TTGCTCCCGAGCACG  78 111
JRI60_RS35130 NONE
        istA NONE
        istB NONE
JRI60_RS35145 8828915 .. 8828942 +  -2.6  -2.79183   CATACAGCGCAGAAC        CCTCCGTAGCAT GCGG ATGAAAGGGAGG         TCTCATGCGCATGCG  38 96
JRI60_RS35150 8829785 .. 8829795 +  -3.2  -3.53811   TCCGGGCTCATCGAG                 TCCA CCT TGGG                 TTTCACCCGCCTGCC  49 468
JRI60_RS35155 NONE
JRI60_RS35160 8832739 .. 8832772 +  -2.9  -3.90744   TCTCTTCACGTGGCA     CCGCTGGTGAGCCGT TTCA ACGACCCGCCACCGC      TTCTTTCAGCCACCG  58 155
        uvrA 8842348 .. 8842400 +  -3.7   -3.0497   CGACGCACCTCCCCC TCTA-A--CGACGCGTGCC-CGAGC CCGATAA GCTCGCGGCATGCGTCGACTCTGGA TGTTGGGACTGCTCT  44 83
JRI60_RS35190 8844889 .. 8844905 +  -2.9  -3.76492   ACGCGACTTTCTCAC              TTTCTGC GTC GCTGAAG              TTTCATCCCATTCAA  56 388
JRI60_RS35195 NONE
JRI60_RS35200 NONE
JRI60_RS35205 8849079 .. 8849091 +  -4.8  -3.46509   GAGGGCCAGCGCGGC                CACC CTCCC GGTG                TTGCTCTTCTTGGGA  51 515
JRI60_RS35215 8849811 .. 8849826 +  -7.5  -3.20747   CCTCATTTGAGCTCT              CCCGG CGCGTC CCGGG               TTCCTCGCCTTTCCT  54 31
JRI60_RS35220 8850195 .. 8850211 +  -5.1  -4.11216   TCCGCCACCCATGTA              TCCGG TTTTACT CCGGA              TTTTCCGGGTGGCGG  64 54
JRI60_RS35225 8851242 .. 8851272 + -18.4  -2.78384   GCCGCCGGTGACGAG       TTGAGGCGGTGGTG GGC CATCACCGCCTCGA       TCTCCTCGCGCAGGG  79 302
JRI60_RS35245 NONE
JRI60_RS35250 NONE
JRI60_RS35255 NONE
JRI60_RS35260 8863825 .. 8863846 +  -7.9  -2.83271   AACGCTCTCGAGCTG           GCACCTGGA CGCA TCCGGGGGC            TACTTCTGCGCGTAC  52 76
JRI60_RS35285 8869286 .. 8869332 + -11.5  -3.15544   TCCACGCGTTCATGG CGTCGCCGAC-CGGCCAACGCG TGCT CGTGTAGTCCGTGTAGGTGACG TTCGTGGGCCTCCGG  65 465
JRI60_RS35295 8871006 .. 8871025 +   -10  -3.16564   CCTCGTCGTACCGCC            G-CCGGGCT TCG AGCCCGGGC            TTGCTGGCCTGGAAC  59 505
JRI60_RS35305 NONE
JRI60_RS35310 8873611 .. 8873644 + -11.7  -2.79183   CCGTCCTCCAACATC     CGCTCCTCG-GTGGAG ATG CTCCACACGTCGAGCG     TGTCGTCACGGTCCA  60 184
JRI60_RS35330 8877488 .. 8877514 +  -8.6  -3.01712   GAGCCAGTCCCGTGC         CCGCGCTCACCA TGA TGATGGGCGCCG         TGTTCGAGGCGGGCG  54 462
JRI60_RS35340 8880993 .. 8881003 +  -2.4  -3.34398   AACGCGGCTCGTCAT                 GGAC CTG GACC                 TGTTTCACGGCAAGC  44 49
JRI60_RS35345 8882062 .. 8882079 +  -3.3  -2.64616   ACCCGCTCCACATCG             CCCGG-GC CGT GCGCCGGA             TGGTCTCGGTGAAGA  39 442
JRI60_RS35410 8904389 .. 8904414 +  -4.5  -3.63991   CCGAGCGCTCGGAGA         GGAGGCGTCTG CCCC CGTGCGCCCCC          TTGTTCAGCATCATC  55 417
JRI60_RS35420 8906088 .. 8906100 +  -6.9  -3.14344   CGAGACCTCGAAGGA                CGTGG AGC CCGCG                TTCCTGGCGAGGATC  51 98
JRI60_RS35480 NONE
JRI60_RS35485 8925249 .. 8925282 +  -9.5  -2.62463   GCGGCGTGAACAGCA     TGCAGCCGTTGCAGC CGGA GCTGGGGCGGTTGCG      GTTCTCGATGATCCA  53 352
JRI60_RS35500 8929636 .. 8929662 + -12.3   -2.6155   GAACGACTCCTCGTG         CAATGAGCGCC CTCAT GGCGCTCATGG         ATTCATATTCACGCC  64 389
JRI60_RS35510 8930833 .. 8930881 +  -2.2  -3.38812   TAGCGGTTGAGCAGT CCATGGACGTGGCTGCGCGCCAGC CCC GCCGTC-CGC-GCCACTTCCGAGA TGTTGTTGCCGCACC  45 66
JRI60_RS35520 NONE
JRI60_RS35525 NONE
JRI60_RS35540 NONE
JRI60_RS35545 NONE
JRI60_RS35550 NONE
JRI60_RS35555 8943456 .. 8943469 +  -6.7  -3.53012   CCGGTCCGTTCTGGA               GAAGG CAGC CCTTC                TTTCAGCCAACGGGA  58 62
JRI60_RS35560 8944965 .. 8944983 +  -5.8  -3.05715   CGAGAGCTTCCGCGG             GGGGCTCG GCC CGCGCGCC             TTCGATGACCACCTT  47 69
JRI60_RS35615 8958334 .. 8958350 +  -2.9   -2.9356   CCGCAGTTGGCCGCG              TCGTACG AGC TGGACGA              TCTCTCGGTGTCGAT  41 89
JRI60_RS35620 8959431 .. 8959443 +  -3.3  -2.59431   CACACGGAGCATGAC                TGGTC GGC GCCCA                TGGGTTCTGGACGGG  39 112
JRI60_RS35625 NONE
JRI60_RS35645 8966340 .. 8966354 +  -7.1  -3.03159   CCTGGGAGAGCGCCA               CGGGA CTGGT TCCCG               TGTTGACCAGCTTGA  49 412
JRI60_RS35655 8970638 .. 8970648 +  -3.2  -3.05384   TGATGCGCCGGTAGG                 TGTC GAT GACG                 TTGGCTCCGACCGCC  43 391
JRI60_RS35670 8974095 .. 8974109 +  -7.1  -2.52464   GTAGCGTTCGACACG               GCACG GAAGA CGTGC               TGGATTCGGCCGCGG  47 205
JRI60_RS35675 8975614 .. 8975644 + -20.5  -4.25256   CGTCTCCTGTAGCAA      GACCCCGG-GCGCC ATCA GGCGCGCCGGGGTC       TTCTTTTCATGAGCC 100 60
JRI60_RS35690 8979395 .. 8979418 + -10.2  -4.09739   TTCGCCCAGACCCTC          CCGGGGAGGC TGTT GCCTCTCCTG           TTTTCAACAGGTTGC  78 125
JRI60_RS35695 NONE
JRI60_RS35700 NONE
JRI60_RS35705 8982077 .. 8982087 +  -2.4  -3.53012   GATCGCGGGAAAGAA                 GGGC ATC GCGC                 TTTCGAGCGGGAGCG  48 454
JRI60_RS35715 8984225 .. 8984243 +  -2.2  -3.28712   CCCGGCGGCCAGGTA             GCGCTCGC CGC GCAGGCCC             TTGTCGGCGGCGGCC  45 513
JRI60_RS35725 8985992 .. 8986014 +  -2.6  -3.57462   GGACCTGGCATGGAT          CG-CCAGCG AACATG CGCCGGGCG           TTTGACCGTCCACTC  48 82
JRI60_RS35730 8987448 .. 8987468 +  -5.3  -2.96329   AAGAACCTGTCACAG            CCGGAGCCT TCA AGGCTGCGC            TCCTTCTTCGCTTCC  47 101
JRI60_RS35735 8988861 .. 8988876 +  -2.4  -3.17075   GCTGAATTGGATGGA              TTCGGC ATCC GCCGCG               TTCGATTGGAGGACG  44 335
JRI60_RS35750 8991826 .. 8991842 +  -2.9   -3.5882   AAACCAGGTTCCGCC              CACGTTG ACC CGAAGTG              TTTGGGCCTCCTATC  49 150
JRI60_RS35755 8993124 .. 8993150 +  -2.2  -3.05384   GCCCCGGGGGGCGGA        TGAT-GGGGCG GGCACG CGCCCCTACCG         TTGGCTGCGGGGGAA  41 402
JRI60_RS35760 NONE
JRI60_RS35765 8996295 .. 8996305 +  -2.4  -3.77196   GTCGCCCCACTCCTT                 GCCG TAA CGGA                 TTTCGTCCCTGCTCC  54 193
JRI60_RS35770 8998006 .. 8998039 + -13.8  -2.78384   CTCAACACCACGCGC     GCTGGGGTGGCCCC TGCGCT GGGGCCAGCCCAGA      TGTGCTCGGCAACAC  69 249
JRI60_RS35775 NONE
JRI60_RS35780 NONE
JRI60_RS35785 9002141 .. 9002197 +  -6.4  -3.14344   GCTCGGGCTCAACCT GGGGCCCGGGT-CCCCTCCCCCGTC CCTCTCCC GAAGGGAGAGGGGTACAAGAGCTCC TTCCTCGGCCCGGTC  51 54
JRI60_RS35790 9002960 .. 9002971 +  -4.4  -3.57792   CCCACCTGGACATCT                CGAA GGGG TTCG                 TTTCGAGGTCCATCA  52 273
JRI60_RS35795 9003741 .. 9003757 +    -3  -3.14051   GCTGCTCTTCATCAC             CCTG-CT CGAC AGTCAGG              TGTTGCTCGGGATGA  44 125
JRI60_RS35800 9004183 .. 9004198 +  -2.4  -2.90075   TTGCCGAACAGCCAG              GTCGGG AAGT CCCGGG               TCTCATTCGCGCCGA  40 284
JRI60_RS35815 9007182 .. 9007210 +  -7.4  -4.00038   CCGTCCTGTGGTGCG       CGGGGCTGGTGCT CACG AGC-CTGGCCCTG        TTTCTCGTCCTCCTG  68 499
JRI60_RS35825 9008459 .. 9008469 +  -2.4  -3.01924   TGAGACCTCAGGTGG                 CCCG ATC CGCG                 TGTTGACAACCAATA  41 38
JRI60_RS35830 NONE
JRI60_RS35835 NONE
JRI60_RS35840 9009567 .. 9009600 + -13.1  -3.01924   GAGTAGAATCTGCTC     GA-CCCCGTGGGTGAC CGA GACGCCCGCGGGGCTC     TCTTCCCAAACCGTC  70 101
JRI60_RS35850 9013559 .. 9013572 +  -3.8  -3.15544   CTCTCCGGAACAAGC               CGCT CCCGTA AGCG                TTGGTGCGGCTGAGC  45 366
JRI60_RS35860 9015100 .. 9015123 +  -2.3  -3.53012   CGCGGCAGGTACGCG          CCAGCATGT AGAGCA GCGTGCCGG           TTTCGCGAGAGACGG  48 513
JRI60_RS35870 9016350 .. 9016362 +  -4.8  -3.16668   CTTGTTGCCCACCAC                GCTG CGCTC CAGC                TTCGTGACGCTGTTC  47 289
JRI60_RS35890 9024613 .. 9024632 +    -2  -4.06687   TTGCGGGTGCGGCCG            GGCCAG AGCCGCAC CAGGCC             TTCTTTCTCGCCCAT  60 202
JRI60_RS35900 9026997 .. 9027007 +  -2.4  -3.16564   GCGAACGGAACAGAT                 CCAC GAT GAGG                 TTCATCCGGTCCGCG  44 292
JRI60_RS35915 NONE
JRI60_RS35920 9030716 .. 9030730 +    -7  -3.14564   CCCGCGCACTTCGTC               CCGCGC CGC GCGCGC               TTCGTCCCCACCTCC  52 64
JRI60_RS35925 9031800 .. 9031814 +  -8.6  -3.05463   GGGCAGCCTTGACAA               CTTAGG ACT CCTAAG               TTACCTCAAGACCAT  55 65
JRI60_RS35930 NONE
JRI60_RS35935 NONE
JRI60_RS35940 9033732 .. 9033753 +  -6.5   -3.4072   TGCGCCTTCGGATGC           CGCGCCG GACTGACA CGGCGTG            TTGTCGTCGAGCATC  55 13
JRI60_RS35945 9034818 .. 9034833 +  -6.8  -2.62983   TAGCGCACGAAGCGG              GCGTTG GGCT CGACGC               TGATCTCGAGCTCGG  47 257
JRI60_RS35950 NONE
JRI60_RS35980 NONE
JRI60_RS35985 NONE
JRI60_RS35990 9043347 .. 9043391 +  -9.2   -3.9712   CCCACGTGGACGTCT CCACTCACCATCACCACCCGC TGCC GGGGGTGGCGCTGCTG-GTGG TTTCTGATGAGCTCC  69 410
JRI60_RS36015 9049821 .. 9049836 +  -2.5  -3.30124   CCCGCTCCGGCGTCG              TCTGC CCTTGC GCGGA               TTCTCCGAGCTGCAG  45 320
JRI60_RS36025 9051349 .. 9051388 +  -4.8  -3.14132   GTGAGCCTCATCGAG  GCGCGCAAGCGCTGACCGG GCC CTGG-CAGCCGTCGCGCGA  TTCGTGGCGAAACCG  47 11
JRI60_RS36030 9052043 .. 9052060 +  -2.6  -2.64616   AAATTCTCCGCGCTG             CTCAGG CGTCTC CCTGCG              TGCTCTCCATGGAAG  38 121
JRI60_RS36035 9053777 .. 9053787 +  -2.4  -2.72661   GAGTGAGACAGAAAT                 CGGC ATT GCGG                 TCCTTACCAGTCATC  39 165
JRI60_RS36045 9055305 .. 9055334 + -17.2  -5.63517   CACTGCCGACGACAG       CCCCGGCTCCGAG ATCCC CTCGG-GCCGGGG       TTTTTTCTTTCGAGC 100 228
JRI60_RS36050 9056317 .. 9056340 + -10.2  -3.79419   CTGCAGCGCGTCCTC          GGGCCCTTGC GCGG GCAGGGCCCC           TCTTTTCTCCAACAG  74 246
JRI60_RS36060 NONE
JRI60_RS36065 9058904 .. 9058916 +  -3.3  -3.31144   GTGAATGCCCTCGCC                GAACG CGA CGTGC                TTGTCGGCGTCCGGG  47 164
JRI60_RS36090 9062892 .. 9062908 +  -4.3  -3.06796   TGGAGACCGAGCTTC              TCGGCTG TGG CGGCCCA              TTCGGTGCCATACGC  45 525
JRI60_RS36110 9065825 .. 9065837 +  -4.7  -3.13403   AAGATGAAGCCGCCC                TCCGC GAA GCGGC                TCTTGCTCCGCCCGA  47 297
JRI60_RS36125 NONE
JRI60_RS36130 9071237 .. 9071255 + -10.2  -2.70932   CTGACGTCGGTGAGA             AGCGCCTG ATA CAGGCGCG             TGGTTCACAGAAGGG  57 88
        msrB 9075870 .. 9075916 + -12.9  -3.28924   ACCAAGTGAGCCCCG GC-GCGCGGCG-GGCTCAGCGCG CCG CGCGCTCGGCCTCGACGAGCCGC TTCTGCGACAGGCTC  73 32
JRI60_RS36225 9092675 .. 9092713 + -18.3  -4.15044   CGATTTGAAGGATCC  G-GGCACCGGCGTGG-GAT GAA ATCACCGCGCCGGTGCCGC  TTTCTTCAAAGAACG 100 33
JRI60_RS36230 9094002 .. 9094023 +  -4.3  -3.01712   TGAGACTGCGGGCCG           TCACCCTCC TGGA GGAGGTGGA            TGTTCCGCCGCGAAC  45 38
JRI60_RS36235 9095699 .. 9095715 +  -3.5  -3.96624   ACCGTGCATCAGGTC              AGCACGC CGA GCGCGCG              TTTGTAGTACGCCTC  59 56
JRI60_RS36245 NONE
JRI60_RS36250 9098791 .. 9098818 +  -3.2  -3.35679   CAGCCTCGACGCGAA        GGTGCGCCACCG CGCC TGACGCCGCACC         TTCTGCGTCCAGCCA  48 7
JRI60_RS36255 NONE
JRI60_RS36260 9100484 .. 9100502 +  -6.6  -2.70932   ACTGAGCCGCGCCAG             GGTCTCCT CCA GGGAGTCC             TGGTTGCCCCAGAGG  46 81
JRI60_RS36270 NONE
JRI60_RS36275 NONE
JRI60_RS36280 9105672 .. 9105704 +  -3.4  -3.69483   GGGGCCGTGGATGTC      CCCTCTCCCT CTGGGAGAGGGCT AGGGTGAGGG      TCTTTTGCCTGGACT  53 76
JRI60_RS36305 NONE
JRI60_RS36310 NONE
JRI60_RS36315 NONE
JRI60_RS36320 NONE
JRI60_RS36325 9118446 .. 9118460 +  -2.1  -3.05997   TGAACAAGTCGGAAC              GCGTAC TCAG GT-CGC               TGTCGTTTGTAGACG  41 69
JRI60_RS36330 NONE
JRI60_RS36335 NONE
JRI60_RS36340 NONE
JRI60_RS36345 NONE
        istA NONE
        istB 9128733 .. 9128748 + -11.8  -2.82623   AAACACGAAGGAAAT              CGCGGC GCTC GCCGCG               TGCTTCTACACGGGC  63 225
JRI60_RS36360 NONE
JRI60_RS36365 9131212 .. 9131224 +  -9.1  -3.01712   GGGCTGAGGGTGGGG                CGGAG TGC CTCCG                TGTTGGCGCGCGAAC  57 237
JRI60_RS36385 9135478 .. 9135496 +  -3.8  -3.20435   GCGATAAGCTCTCGG             GTGAATGG ACC TCATTCCC             TTCCTCCCTGCTTCG  45 82
JRI60_RS36390 9136437 .. 9136454 +  -6.2  -3.63515   CGCGCGTGCCGTCCC             GGGGCC TGTCCC GGCTCC              TTCTTGGACATACCG  59 119
JRI60_RS36420 9141484 .. 9141521 + -16.9  -5.00616   CCCCGAGCCCCACTT   CTTCCGCGCCCCGGTGC CCCC GCGCCGGGGCGTGTCAG    TTTTTTCGACCCCCC 100 184
         tuf 9142965 .. 9142998 + -26.1  -4.62783   CGGTGAGGTGACAAG     GGAGCGCCGCTTCCG GCAA CGGAGGCGGCGCTCC      TTTTTCGCGTGCGTG 100 30
JRI60_RS36430 9144086 .. 9144100 +    -7  -2.70932   GCCCGAGTCCACCTG               AGCCCC CTC GGGGCC               TACTTCGAGCCGGGC  48 25
JRI60_RS36450 9148122 .. 9148135 +  -4.5  -2.93723   CGTGCTAAAATCGAG               CCC-GG TTG CCAGGG               TGTGGTTCCTGGAGG  44 48
JRI60_RS36455 9148873 .. 9148910 +  -8.3  -3.28712   GGCCGTTGCCGTCGA   GGCCGCGGCGCGCGTGGC GCA GCCAGGTGCGCT-TGCCC   TTCTGCACCACGAAG  58 296
JRI60_RS36470 9151125 .. 9151135 +  -3.2  -3.07043   CGAGAGCCCCCTCCC                 GATG CGA CGTC                 TCTTCGCCTCCTCGC  42 43
JRI60_RS36475 9152753 .. 9152795 + -14.1  -4.08767   CCCGGGAGAGGGTCA GGGTGAGGGTGC-CGTGACC TCCG GGCCGCGAGCACCCTCTTCC TTTTGCGGGGATGCC  85 51
JRI60_RS36500 9158642 .. 9158652 +  -4.6  -2.80492   CATCCGTGTGCGTCC                 GGTC CGA GGCC                 TGCTTGCTGGTAATC  43 48
JRI60_RS36505 9159939 .. 9159952 +  -3.7  -3.02144   GAAGCAGCAGCAGCA               CCCGG TCCG CCGAG                TATTGCACCGGGTAG  43 351
JRI60_RS36520 9162555 .. 9162583 + -11.7  -2.82015   AGCGCCCCCGCGGGA       GCCGGGGCCGCG TCAGTT CGC-GCCCTGGC        TCTCGTCCCTGTAGC  63 39
JRI60_RS36525 9163271 .. 9163287 +    -5  -2.87132   TCGTCCCTCCTGCCC              CGGGTG CGCGA CCCCCG              TGTGTCAGGGGAGCG  44 206
        dnaG 9165282 .. 9165296 +  -2.8  -4.56597   TCGGCCGGCTCGCTC               CAGG CCAGGTC CCTG               TTTTTCCAAGGAGAA  69 77
        rpoD 9167591 .. 9167618 + -14.1  -4.72846   CTGGAGTAAGAAGAA        GCCCCCGCTCC CCCAGA GGACCGGGGGC         TTTTTCCGTGTATGC 100 140
JRI60_RS36540 9168015 .. 9168047 +  -4.7  -2.71731   CTGAGCAGCGCGGGC     ACGCGCCCCCTTGC GCCGGA GCG-GGGTGCGCGA      TAGTTCCCAGGTCGG  43 37
JRI60_RS36545 9168187 .. 9168201 +  -2.7  -4.13767   CTCCCCGTAACCCCG               CCCCG CGCTT CGGGA               TTTTCCGCTGAGGAG  59 39
JRI60_RS36550 9168747 .. 9168763 +  -7.9  -3.23216   GCTTGCGCGTGGGGG              CGCTGGC CCT GGCAGCG              TTGATGCTGGTGACA  56 347
JRI60_RS36555 NONE
JRI60_RS36560 NONE
JRI60_RS36565 9171141 .. 9171174 + -12.5  -2.82516   GGGGCTTCGACGTTC     GACCGATGGGGCG CGCGGGGA TGCTCCATCGGTC      TCTGCTCCTGGGGCC  66 51
JRI60_RS36595 9175545 .. 9175559 +    -7  -3.21218   GGGCGGCTGCGGTGG               CTGGCG CGG CGCCCG               TTCCTGCTGAGCCGT  52 1
JRI60_RS36600 NONE
JRI60_RS36605 9176630 .. 9176686 +  -7.8  -3.22858   ACAGGGGATGGGCCC GGCGCTGGCCCATGAGCCGGCTCGGCTG GTT CATCCGGGCCCAC-C-TGCGCCGGCGGC TCTTCGTCTGGTTCG  56 83
JRI60_RS36610 9178372 .. 9178409 +  -8.3  -3.72324   AGAGGGTCTTCGCCC   CGGCGAGAGCGCGC-GCG TTG TGCAGCGTGCCGTCGCTG   TTCTTGATGAGGATG  64 431
JRI60_RS36640 9184526 .. 9184563 + -23.7  -3.66921   ACCTCCACCACGAAG   TGAGAAGGGCCTCACTG GAAA CAGTGAGGCCCTTTTCA    TTTGGGCTTCGAGTT 100 31
JRI60_RS36645 NONE
JRI60_RS36650 NONE
JRI60_RS36655 9190317 .. 9190332 +  -5.4  -2.62396   TCCCAACAACCGCAG              GGC-GAG CGC CTCCGCC              TGCTCTCGCGCCATC  43 445
JRI60_RS36695 NONE
JRI60_RS36700 9200581 .. 9200592 +  -3.6  -3.05844   CGAGGGCGGTGTGAG                TGGC ACGA GCCG                 TGTTCAGCTCACCGG  43 283
JRI60_RS36710 NONE
JRI60_RS36715 9205278 .. 9205288 +  -2.4  -3.19602   GTCGATGCGGAGGCT                 CTCG AAC CGCG                 TGTTCATGTCCACCG  44 147
JRI60_RS36730 9208417 .. 9208427 +  -6.8  -3.39327   AGGTGCCAATGACGC                 GCAG GAA CTGC                 TTGTGCGTCTCGCGA  53 296
JRI60_RS36740 9211434 .. 9211447 +  -5.2  -3.61398   GGTGCGGACCCTCGC               CCGC TGTCGT GCGG                TTCTTGAAACCCAGG  57 362
JRI60_RS36790 NONE
JRI60_RS36795 9223105 .. 9223117 +  -3.3  -3.65522   CCCCAGGTTGATGTC                CGAGC GCA GCTGG                TTCTTGCGCTGCATC  53 185
JRI60_RS36805 9226053 .. 9226068 +    -6  -2.70932   GCTGCCAGTCGTTGA              CGGACC TGGG GGCCCG               TGCTTCAAGACGGCC  47 26
JRI60_RS36810 9226902 .. 9226915 +  -8.1   -4.7078   GCCGCGAAATAGGCG               CGGTC TGGT GACCG                TTTTTGCCTGGTTGC  81 77
JRI60_RS36815 9230975 .. 9230986 +  -5.8  -3.44051   ATGGTGTCGATCTGC                GGAG CCAG CTCC                 TTCTGCTGCTCGGGA  53 259
JRI60_RS36825 NONE
        cyaY 9232594 .. 9232622 + -14.5  -4.21772   CGACTGACCCTCACC        CCAACCCTCTCCC AGA GGGAGAGGGAGGG        TTGTTGTTTGTTGGG  95 34
        rlmM NONE
JRI60_RS36870 9242394 .. 9242412 +  -6.6  -3.23899   CCCCGCGAACACCAC             CGTGCCAT CCG ACGGCGCG             TTGACTTCCTTGCCG  51 350
JRI60_RS36895 NONE
JRI60_RS36900 NONE
JRI60_RS36905 9253268 .. 9253311 + -18.8  -2.87132   GAGCGCAACTTCCCT CCC-CTCCCCTCCCCTCTCCC TTC GGGAGAGGGACGGGGTGAGGG TATCTCGCACCACGA  89 62
JRI60_RS36910 NONE
JRI60_RS36915 NONE
        coaD NONE
JRI60_RS36925 NONE
JRI60_RS36930 9258601 .. 9258614 +  -5.2  -3.04461   GCGCTCCGACTCCAC               CGCG TTCTCC CGCG                TGTTCCGGCTGCGTC  47 323
JRI60_RS36945 9261381 .. 9261438 +  -9.7  -3.14132   GGGTCGTCCCCGCGA GCCGGGCGAGGAAGGCTAGGACGCC ACCTCGAG GGCGTCGTCGTCGTCCTTGCCGCGC TTCATGGAGCGGCCC  59 7
JRI60_RS36965 NONE
JRI60_RS36970 9267480 .. 9267490 +  -2.4  -3.14132   ACTGAAGCACCAGCG                 CGCC ACC GGCC                 TTCGTCCGGCCGAGC  44 135
JRI60_RS36985 9271346 .. 9271376 +  -8.2  -3.45023   CACCATGTCCACCAG       GTACGGCGCGGG GGTGAAG CGCTCGCCGTAC       TTGTCCTGGTAGTGC  61 135
JRI60_RS37015 NONE
JRI60_RS37020 9277595 .. 9277630 + -19.8  -3.44848   GTACTCCTCGCCAAT    AGAAGGGCCCGGAATC GCAA GGTTCCGGGCCCTTCG     TCTTTGCTCACCCAC 100 28
JRI60_RS37025 9278811 .. 9278852 +  -7.9  -3.36327   CCTCGGGTGCTGCCT C-GTGAGCGACCAGGGCCTG TGT TGGGGCCTGCTCGCGCACCG TTATCGATGGACTCG  59 95
JRI60_RS37035 9280692 .. 9280713 +  -3.5  -3.65581   CTCGATTGACCCGTG           GGCACGCGG TGCT CGGTGAGCC            TTCTTCGGGATTCCT  54 32
JRI60_RS37040 9281780 .. 9281800 +  -7.5  -3.28712   TCCTCTCCTCGGACA            GTGAGTCCG CAT CGCACTCGC            TTCTCGAGCGGGCGA  56 238
JRI60_RS37045 9282934 .. 9282952 +  -4.4  -3.61398   GTCGTCGAGGGGAGA             AACCGGCA TGA TGCCGGCA             TTGTTGACGAGAACG  55 509
JRI60_RS37055 9284271 .. 9284290 +  -2.1  -3.14284   GGGCGGCGAGACGGT            CGAGG GTGGTGCTTG CCTCG             GTTTCTTCCTCGCGG  44 102
JRI60_RS37080 9289571 .. 9289588 +  -2.6   -3.0634   ATGCGACTGCCAGGC             GCTCCG CGCTCT CGGAGG              TGTTCGCGTGGGATT  41 56
JRI60_RS37085 9291647 .. 9291681 +  -2.7  -2.76046   CCCAGAGGCGAAATG     GATGCGAGCACCGTT TCCGC ACCGGAGTTCCCGTC     TCGTGTTCACGTTGC  40 91
JRI60_RS37090 9292595 .. 9292632 +  -2.4  -2.87132   ATTCCCGGTTCTGAC   GGAGGGGCCGGGGCTC TGAATC GAACCCCACCCGCGCC    TCTCTCCCGCCCAGG  40 7
JRI60_RS37095 9294123 .. 9294137 +  -4.9  -2.62184   TCGATGTCGAGGTTC               GGGGC GAACA GTCCC               TCATCTGCCGGGGCA  42 290
JRI60_RS37100 NONE
JRI60_RS37105 NONE
JRI60_RS37110 9297804 .. 9297824 + -11.1  -3.02263   AAGGCTCCCGTGACA            CCGCCGC ATGTGTG GCGGCGG            TGTTGCCAAACGTAT  62 95
JRI60_RS37115 NONE
JRI60_RS37130 9305911 .. 9305953 + -23.5  -3.59979   CCCGTTCGTGATGAG CGCCAGGGGCTCGGAACCG CGCAC CGGTTCCGGGCCCTTCGCG TTTCAGCTGCGCGCC 100 47
JRI60_RS37150 NONE
JRI60_RS37155 9313817 .. 9313868 +  -2.8  -3.31144   CGCGCGCTCGCAGGT GGCGG-GCTCGTCGCCCCACGGGT AGAGCC GCCCGTCCG-TGCCGCGCGCCGCC TTCTCCCACTCGGCC  45 496
JRI60_RS37170 NONE
JRI60_RS37175 9318606 .. 9318627 +  -4.3  -3.05384   AGGGGACATGCACGG           GGCCTCGGA CGGG TCCAAGGGC            TTCAATGGGGCACGG  45 165
JRI60_RS37180 NONE
JRI60_RS37185 NONE
JRI60_RS37190 9320728 .. 9320786 +  -4.6  -2.71712   AGCGGACAGTCACAT CGG-CGGGT-T-GGGGGCTCCATG-GAGAT GAA ACCTCACGAGGAGCCCCCCATGCCCATCCG ATTTCCCACCGCGAG  43 56
JRI60_RS37195 9321234 .. 9321247 +  -3.1  -3.28712   TTTCACCTATCCACT               TGGAG AAAC TTCCA                TTCTCCAGGGGCGCC  46 58
JRI60_RS37200 NONE
        chrA 9323059 .. 9323101 +  -6.9  -2.52896   CCAGCCGCCAGCCCC CCGAAGTCACTCCCCGTAT CACCC ATACGGGGAGCGGTCCTGG TAGCTTCCCCCGTCC  47 214
JRI60_RS37210 9324798 .. 9324811 +  -3.8  -2.74523   CCTTGGTGCTGAGCG               CCAG ATGCCC CTGG                TACTATTGACGGTAG  41 96
JRI60_RS37215 9325230 .. 9325261 +  -2.8  -3.21747   CTCATCTCCCAGCGG      CGCAAGGGGCGCGCG TAA TG-GCGGCCCTGGCA      TTCCTCCTGGAGTGC  46 8
JRI60_RS37220 9326286 .. 9326298 +  -4.1  -2.92642   GTTCGGCCTCTTCTA                CTATC CTG GGTAG                TATCTCCCTGGTGCT  43 78
JRI60_RS37225 NONE
JRI60_RS37230 NONE
JRI60_RS37235 NONE
JRI60_RS37240 9333272 .. 9333303 +  -2.9  -3.28712   CCTCGTAGCGGTCGA      TGGCC-GGCCCG AGCTGGAAG CGGGCCAGGACG      TTCTCGCGAGCGCGG  45 84
JRI60_RS37260 NONE
JRI60_RS37265 NONE
JRI60_RS37270 NONE
JRI60_RS37275 9342601 .. 9342619 +  -6.7  -3.73068   CTGAGCGGACGTCAG            GC-CACGG TCGA CCGTGAGC             TTCTTCGGTTGGGGC  62 422
JRI60_RS37305 NONE
JRI60_RS37310 NONE
JRI60_RS37315 NONE
JRI60_RS37320 9353248 .. 9353267 +  -2.8  -4.07618   GGATTCGCCCTTGAA            GGAACAACG CCT CGA-GTTCC            TTTACTTCTTGAGGC  60 524
        rdgC NONE
JRI60_RS37355 NONE
JRI60_RS37360 9360254 .. 9360282 + -14.5  -4.24002   GGTACTTGTGATGAT        GCGCTGCACAGCG AGG CGCTGGGCAGCGG        TTTTCGCCTTTCGCA  95 354
JRI60_RS37380 9369800 .. 9369813 +  -3.8  -3.48924   TGCGCTGGGCGTAGC               GCAC GGGTAG GTGC                TTGTGTCGCAGATCG  50 299
        hemG NONE
JRI60_RS37395 9372373 .. 9372393 +    -4  -3.84406   GACGCCTCGCTCAGG           GC-CG-CCTC GAA GAGGGCGCGC           TTCTTCTCCTGGAGC  58 106
JRI60_RS37405 NONE
JRI60_RS37410 NONE
JRI60_RS37415 9378792 .. 9378804 +  -5.5  -3.14132   GGCGTCGAAGAGGAA                GTTGG GCA CCAGC                TTCGTCAGACCGACG  49 70
JRI60_RS37475 9394198 .. 9394232 +  -2.7  -2.70932   CCATTTTCTCTTCAC    TATC-CGTCCTGGCCG GAAA CGGCCAGTGCGTGAGC     TGCTTCAAACGGAAA  40 87
JRI60_RS37480 9396562 .. 9396590 + -20.3  -3.91911   CCTCCTCGCAACACA        CGGGGGCCGCG CTGTCGT CGCGGCCCCCG        TTTCATTCACATGCG 100 47
JRI60_RS37560 NONE
JRI60_RS37565 9427281 .. 9427296 +  -2.5  -3.65902   CTTTAACGCCCCCCG              GGC-CG GGAGG CGAGCC              TTTACGTCGGATCCG  51 494
JRI60_RS37585 NONE
JRI60_RS37590 9430629 .. 9430674 + -21.2  -3.65902   CGACTAGTCGCCTTC CCCGGTGCCGCGTCCC-C-GCC AGAC GGCCGAGGGGCGCGGCACCGTG TTTCACTGGGATGCC 100 34
JRI60_RS37595 9432148 .. 9432158 +  -2.4  -2.63631   CTCCACCGCCCGCAT                 CAGC AGC GCCG                 TGGTGTCCACGTTCC  38 259
JRI60_RS37610 NONE
JRI60_RS37615 9476640 .. 9476692 + -13.2  -2.70143   CTCCGCCTGACGTCT CACCCCCGTCGCGGCCCGCCTGGAC GTAC GTCTTGGCGGGCCGCC-CGGGGACA TGCTCTCATTCCCCT  67 31
JRI60_RS37620 NONE
JRI60_RS37625 NONE
JRI60_RS37630 NONE
JRI60_RS37635 9480543 .. 9480575 + -14.2  -3.45027   GGGAGCTGGCGCAAG     CCCCCCAGCCCGG CCGGCGTT CCGGG-TGGGGGG      TATTTCGTCCAGAAT  77 99
JRI60_RS37640 NONE
JRI60_RS37645 NONE
JRI60_RS37650 9483875 .. 9483898 +    -3  -3.42574   TGGAGCGAGAAGAAG          TAACACCCGC GCGG GCGGATGGTG           TTCTCCTGGCGTTGC  48 23
JRI60_RS37655 NONE
JRI60_RS37670 NONE
JRI60_RS37675 9490471 .. 9490487 + -10.9  -2.78596   AGCACCGGACTCTGC              GCTTTCG GCC CGAAAGC              TATACTCCGGGCATG  60 75
JRI60_RS37710 9498094 .. 9498105 +  -3.6  -2.52676   GAGCAGCCGGTAGTC                CCGG CCCT TCGG                 TCCCTTCACCACCTC  40 451
         bet 9515451 .. 9515503 +  -3.3  -3.85698   GTCATGGCGAACAAC CGCCTTGAAACGTGGCGGCTTCC CTACCGT GGAAACCGACACTGTTCAAGCCC TTTGTCACAGCGGGA  56 270
JRI60_RS37860 9523388 .. 9523404 +  -3.6  -3.28924   GAGTCGCCACGGGCG              CCGGCG TGGGC TGCTGG              TTCTGACCGAAGCTC  47 334
JRI60_RS37885 NONE
JRI60_RS37890 9529381 .. 9529397 +  -2.2  -3.28712   AGAAGCGGCGCAGCA              CGTCGA AGGCG TTGGCG              TTCTCCACCGAGACG  45 388
JRI60_RS37935 9541085 .. 9541123 +  -5.9  -2.94225   GGGGGAACGAGGTGA  GC-CCG-CGCGGAGGCGCT CAG GGCGCGTCCGTGACGGAGA  TGTACTGGTTTTTCG  48 61
JRI60_RS37950 NONE
JRI60_RS37955 9544880 .. 9544896 +  -2.9  -3.36273   GGTGTCGTGGTGCGT              CGCCT GTCGCTG GGGCG              TTGATCTTCCCCGGG  48 5
JRI60_RS37960 9545916 .. 9545947 +    -8  -2.86164   CGAGTTGTCGCCCGT      CCAGCCGTGCGCCTC GAA GACGTGCA-GGTTGG      TGTACTGCTTGCGCA  50 227
JRI60_RS37975 NONE
        mutY 9549715 .. 9549758 +    -5  -3.14132   AGCCTTCCGGGATGA CGGTCAGCCGGGGC-GCCAGG GCA CCCGTCTGGCCCTGCTTGCCG TTCATCACCACCAGG  47 453
JRI60_RS38000 9555858 .. 9555872 + -11.4  -2.52464   ACCGCACCGATGTAG               CCGAGG TTG CCTCGG               TCGATTCGAGGAAGG  61 422
JRI60_RS38025 9560564 .. 9560576 +  -7.7  -3.02511   TCCAACGCGAGCGCC                TGCAC CGC GTGCA                TCTTCAGGAACTCGC  52 455
JRI60_RS38040 9565862 .. 9565916 +  -6.3  -2.73468   GAAGATGAAGGCGCA GCCCATCGTCAGCGCTCGAAG-GGGCG ACT CGTACGCCTCGAGC-CAGCCGATGTGC TGCTTGCGCCTGTTG  46 246
JRI60_RS38060 NONE
JRI60_RS38065 9570668 .. 9570680 +  -3.3  -4.07568   TGCACTTCATCCACA                CGCCA TTC TGGAG                TTTTCGGGCCGCAGC  59 298
JRI60_RS38075 NONE
JRI60_RS38080 9574710 .. 9574720 +  -8.2  -3.05844   TCGGGAGTTGCGCGA                 GCGC GCC GCGC                 TGTTGAACTGAGCCG  55 4
JRI60_RS38085 NONE
        eutB 9577987 .. 9577999 +  -4.8  -2.86271   CTGGCCGCGCGGCAC                GGTG TCCGC CACC                TGGTTGTCGTAGGCG  44 305
JRI60_RS38100 NONE
JRI60_RS38105 NONE
JRI60_RS38120 NONE
JRI60_RS38125 NONE
JRI60_RS38130 9586564 .. 9586588 +  -4.9  -2.70932   CGCCTTGGCCTCCGC          GGACCGCTC CTCGCGC GGGCGCTCC          TCGTTGCCCGGCAGC  43 405
JRI60_RS38180 9595873 .. 9595930 + -21.2  -3.33261   CAGGGGGACGATGTC GGGGGTCTTCTTGGCCGCCATCACGCC CGCCA GGCGCGC-GGCGGCCAGGACGTCCCCC TTCTCCACCTTCCCC 100 289
JRI60_RS38200 9598750 .. 9598763 +  -5.9  -3.28712   AGATGAAGACGTTCC               TCGCG CTGT CGCGG                TTCTGACGGACGGGC  53 6
JRI60_RS38205 NONE
JRI60_RS38210 NONE
JRI60_RS38215 NONE
JRI60_RS38220 9606161 .. 9606174 +  -5.2  -3.29511   TCACGTATAATCCCG               GCCC ATGCAC GGGC                TTCTCCGAAGGTCGC  51 52
JRI60_RS38225 9607780 .. 9607796 +  -2.9  -3.00704   CCGCGCTGACCCACT              TTGGGAG GTG CTCGCGA              TGTCGTTTGACCCGT  42 54
JRI60_RS38230 9608778 .. 9608795 +  -9.1  -3.29511   AAGACGGCGCCCCTG             GGCGAGCC GAA GGC-CGCC             TTGTCGGGAGGTCCG  58 489
JRI60_RS38250 9613853 .. 9613865 +  -3.3  -4.57353   CCAAACGGCTTGACC                CAGCT ATC AGCCG                TTTTCTGTAATCGGC  69 342
JRI60_RS38260 NONE
JRI60_RS38265 9616088 .. 9616111 +   -11  -3.14051   TGGAGCGGCGCTACT          CGCGACGG GATTTGCA CCGTCGCG           TCTTCGTGCGAGTAC  64 374
JRI60_RS38270 9617106 .. 9617121 +  -3.2  -3.54424   CATCCGGTGCTCCTC              TGCCAT GGCG ATGGCC               TTTCCCCAGGTGCAA  49 62
JRI60_RS38275 9618224 .. 9618254 + -11.8  -2.62175   CCTCGAGACGCTCGC       GCTCCCGGCGGACT TCG AGTTCGCGGGCAGC       CTTCATCTCTTGAAG  61 300
JRI60_RS38280 9619875 .. 9619896 +  -7.3  -3.21595   CGCGCCGCACCCGAC           CCGCACGGAT AGG ATCTG-GCGG           TTCGTCGTGAAGCTT  54 420
JRI60_RS38300 NONE
JRI60_RS38305 9624166 .. 9624195 + -11.4  -3.49232   GGGATGCTGCCTATA       CGGAGGGCCCCA CTGTCA TGGGGCTCTACG        TCTTCTGTTTCGCGC  72 306
JRI60_RS38310 NONE
JRI60_RS38315 9625723 .. 9625734 +  -2.2  -3.05463   GGCCGGAGTACATGT                CGGA CTGT TCTG                 TTCAATGACAAACAT  41 41
        gvpA NONE
JRI60_RS38325 NONE
JRI60_RS38330 NONE
JRI60_RS38335 NONE
JRI60_RS38340 NONE
JRI60_RS38345 9628389 .. 9628399 +  -8.2  -3.26471   GGGGGATGGGACCCT                 CCCC GTA GGGG                 TTGGTGTGCACGTGC  56 331
JRI60_RS38355 9629703 .. 9629729 +  -5.9  -3.48807   GTCTGGTGAGCGCCA        TCGCAGCGAAAA TCTT TTTTCGC-GCGC         TTGTCGATTTCATGC  56 32
JRI60_RS38360 9630217 .. 9630258 + -23.9  -2.72991   CCTGATGCGGCCGGC CGGGCTGCTCAG-CGCTCGT CCC AGGAGCGCCTGAGCAGCCCG TAGTTCACGGTGTCG 100 36
JRI60_RS38375 NONE
JRI60_RS38380 NONE
JRI60_RS38385 9636988 .. 9637022 +  -5.7  -4.07568   TGAGGAGGCAGGTCA    GCACGCCG-CGGCGG AACGTGA CCGCGGGCGG-GTGC    TTTTCCCCGAGGGGA  65 318
JRI60_RS38400 9640267 .. 9640306 +  -7.6  -3.60098   TACTGAGGTCCGCCT  CCTCCAGCGGCGGCGCGA CACG TGGCGCCGTCGCCGGGCC   TTTCCCGTCACGCCT  60 35
JRI60_RS38435 NONE
JRI60_RS38440 9648014 .. 9648029 +  -4.6  -3.39449   CACTGAGCGTGTGCC              CGTGGG TTCC CCTGCG               TTCATCTTCATCCGC  49 399
JRI60_RS38450 9649209 .. 9649234 +  -5.3  -3.80625   GCCCAGCGCGGTGAA         CGCCCGGA-GCG GCT CGCCTCCGCGCA         TTTCCGTTCTCGGCG  60 298
JRI60_RS38480 9653643 .. 9653665 + -13.4  -3.16742   ACCTACGGAGTGGAG           GCGGCGGG ACTCGAA CCCGCCGC           TTCGTCACGCTTCGA  72 46
JRI60_RS38490 9658885 .. 9658921 +  -3.7  -3.41745   AGTGAGACGGTGAAG   CACGGCCGTCCCGAGGG AAACA CCGTCGGCACG-C-GTG   TTGCTCTTGTCGCGC  49 75
        radC NONE
JRI60_RS38500 NONE
JRI60_RS38505 9662145 .. 9662193 +  -7.1  -2.54896   AGGGGGTCTTCCTCG CGTCAGGGGCGGCTCCCGTGCAG AAT CGGACCCGGAGACGCCCATGACA TCCCTTCCATCCCCG  47 58
JRI60_RS38510 9663432 .. 9663444 +  -6.2  -3.14132   TGCCCGGCGCACGAG                GGCC GGCAG GGCC                TTCCTCACCCGGCCC  51 451
JRI60_RS38525 9667426 .. 9667463 +  -9.1  -3.18582   CTCCTAACCAGGTTC   GCGGGGTGAGGGGCTG AAGTGGC CCG-CCCTCACCGCGC   TTCATGCCTGGCCTA  59 106
JRI60_RS38540 9670861 .. 9670905 +  -8.5  -3.19653   TCCGGTCACTGCTTC CTGGGCT-TCGGCGGGAAGC GCTCCA GCATCTCGTCGACGGCCCCG TTGATGAGCTTCTGG  56 42
JRI60_RS38550 9674854 .. 9674876 + -15.6  -3.45742   AATACCCTCACCCCG           TCCCTCTCCC AGA GGGAGAGGGG           TATTATTGGTGATGG  82 65
JRI60_RS38570 9682264 .. 9682305 + -19.3  -2.52464   CTCGAGTAGTCACTC GGCCCCACCCGGGCGTCCG TTTC CGGGCGCCCGGGTGCGACA  TGCCTTGCCCGGCCC  93 32
        serS 9683657 .. 9683693 +    -8  -2.62184   TGTCAGATGTCAGAT   TCCGGGGCCC--CACAAC GTT GTTGCAATGGGCCCCGGA   TGATGTAGAAGGGCG  50 53
JRI60_RS38580 NONE
JRI60_RS38585 NONE
JRI60_RS38590 NONE
JRI60_RS38595 NONE
JRI60_RS38600 9684700 .. 9684715 +  -5.4  -2.78596   TAGGTTCGAATCCTA              CGCTCT CCGC AGAGTG               TCTCATGGAGAGGTG  45 17
JRI60_RS38605 NONE
         ffs 9684925 .. 9684964 + -27.4  -5.75945   CCCGGCCGTTCTTGT  GAAGGAGCCGGGTCTTCT GAAA GGAAGACCCGGCTCCTTC   TTTTTTTTGCCCGCT 100 28
        dnaX NONE
JRI60_RS38625 NONE
JRI60_RS38630 NONE
        recR 9690034 .. 9690071 + -10.5   -4.1021   GAGTAGATGGTGAAG   CGC-ACCTGCACATCGCC CTC GGTGGCGGGCAGGTCGCG   TTTGTACTTCTCGAA  77 204
JRI60_RS38655 NONE
JRI60_RS38660 9696605 .. 9696626 + -15.9  -4.03413   CCCCTCCTCCATCTC           CGTGCTGGC GCTC GCCAGCACG            TTTCTGTGGGCCCCT  93 94
JRI60_RS38670 NONE
JRI60_RS38675 NONE
JRI60_RS38680 NONE
JRI60_RS38685 NONE
JRI60_RS38690 NONE
JRI60_RS38695 9706670 .. 9706680 +  -2.4  -2.89564   CTCCGCGTTGACACC                 CCCG GCC CGGC                 TCTCTAGCGTCGAGC  40 45
JRI60_RS38700 9707360 .. 9707373 +  -3.7  -3.60818   ATGTGCGTGCTATGA               CCGCG GGCT CGGGG                TTTCGACCGTTTTCA  51 118
JRI60_RS38705 NONE
JRI60_RS38710 NONE
JRI60_RS38745 9715797 .. 9715822 + -17.7  -4.55798   TCACCAGTAATTTCA         GGGCCTTGAAC GAAA GTTCAAGGCCC          TTTTCATTTGCCCTC 100 45
JRI60_RS38750 NONE
JRI60_RS38755 9718025 .. 9718046 +  -8.7  -2.90723   ACAACGAAGAGCTTC           TCCTGAGGT AGCC ACCTCGGGG            TCTCCTTCAGAGTCC  54 318
JRI60_RS38770 9722275 .. 9722290 + -11.8  -2.87132   CGACCGCCACCTGGA              GCGCGC AGAT GCGCGC               TGTCTACCAGCGCCC  62 246
JRI60_RS38785 9724305 .. 9724327 +  -3.4   -3.0263   CGAGAGCGGGTTCGC           CCAGGG GGATATGCAGA CCCTGG           TCTTCACGACCTCGT  42 114
JRI60_RS38790 9725525 .. 9725541 + -13.7  -2.70932   CCGCGCAACCGGGAG              GGCCCGT GAG ACGGGCC              TACTTCCCCGGCCAG  69 218
JRI60_RS38820 NONE
JRI60_RS38825 9734490 .. 9734506 +  -2.1  -2.78813   CCCCGCGTCCCCCCT              GGTGCTA ACC TCGCCCC              GTTGTTGGCGTCCCC  38 48
JRI60_RS38830 9736420 .. 9736454 +  -2.7  -3.61398   CCAGCGGGTGGAGCG    GGCCATCCTCGACGCT CAGC ACCGA-GGGGAAGGCC     TTCTTGCCCACCGCC  51 520
JRI60_RS38840 9739125 .. 9739139 +  -7.8  -2.81547   AGGTCCCAGTCGATC               GGGTAC AGC GTGCCC               TGGTTCGTCTCCGCC  49 463
JRI60_RS38865 NONE
JRI60_RS38870 NONE
JRI60_RS38875 NONE
JRI60_RS38880 9763938 .. 9763958 +  -6.7  -2.87344   GTGAGGGTATGGGGA            GCACCCGGG TTG CCCCTGTGC            TCTGTCACACAAGTG  50 103
JRI60_RS38905 NONE
JRI60_RS38910 9774919 .. 9774938 +   -10  -2.78384   CCGCCCGCACTCCTT            CTCCTCGC TGCT GTGAGGAG             TCTCATCACCCGGAG  57 10
JRI60_RS38925 9778090 .. 9778136 +    -5  -2.75183   TCCAACACCGTGCCA CGGAGCGTGAAGCAGGTCGTCA AGA TCGTGACGGCCTTCACGCTCGG TCATTCCATGACCCT  43 16
JRI60_RS38930 9778792 .. 9778811 +    -5  -3.59979   CCTCGCCGAGCGCCT            GGAGCTTCG CCT CGGA-CTCC            TTTGGACTGGCCGCG  55 185
         rnk 9783966 .. 9784009 + -18.8  -2.94099   CACGCTCACTGAGCG CCC-CTCCCCTCCCCTCTCCC TCC GGGAGAGGGACGGGGTGAGGG TATCTCGTCACCCGG  89 29
JRI60_RS38960 NONE
JRI60_RS38965 NONE
JRI60_RS38970 9787163 .. 9787174 +  -3.6  -3.21924   GCAGCTCGGACGGGA                TGGG GTCG CCCG                 TGTTGTGGACCATCA  45 265
JRI60_RS38985 NONE
JRI60_RS38990 NONE
JRI60_RS38995 9792219 .. 9792251 + -19.8  -3.35197   GAACGGAGCGCACGA      GGCCGGACGGGGCG AGCAC CGCCTCGCCCGGCC      TTGCTCTATGTCGAG 100 49
JRI60_RS39010 NONE
JRI60_RS39015 NONE
JRI60_RS39020 9795885 .. 9795913 +  -2.9  -3.05384   TGAGCTCCCCCTACG        GCACGAGGTGGAC CAG GCCCCTCTTGCGC        TTCGGTGACAGGGCC  42 38
JRI60_RS39065 9807173 .. 9807202 +  -2.7  -2.83403   GCTGAGCTGGCGCGC       TGGC-CGCCTGGTG GGG CAACGGGCGTGACG       ATTTCCTGAAACCCC  41 36
        msrA 9808129 .. 9808141 +  -3.3  -3.30124   CGCGCGGGCCTCCTC                CACGG ATA CCTTG                TTCTGCACCGTCACG  47 229
JRI60_RS39085 NONE
JRI60_RS39090 9809921 .. 9809939 +  -3.1  -3.34895   GGCCATCCCCATCCG             GAGCGAG AGGAG TTCGTTC             TTGCTTCGCGGTGGG  46 95
JRI60_RS39095 NONE
JRI60_RS39100 9812214 .. 9812238 +  -2.8  -3.46602   GAACGGGGGCTCTCC         CACCG-CCTTG CTGC CATGGATGGTG          TTGTCCTGTGGCGCG  48 410
JRI60_RS39120 9818020 .. 9818050 +  -6.7  -3.65522   CACGTTGGTGCCCGC      CGCCAC-GCGGCCG TTGG CGCCCGCCGCGGTG       TTGTTGGCCTCGGTC  59 372
JRI60_RS39135 NONE
JRI60_RS39160 9827626 .. 9827673 +  -7.8  -2.89447   GCTGGGGCTCGCCCG GCCGAA--GC-GCCCGGCG-GCCT GAGC GGGCCCGCCGGGCGGCGATTCAGC TACTTGTCCTTGCAG  52 4
JRI60_RS39175 NONE
JRI60_RS39180 9832933 .. 9832969 +  -6.5  -3.14132   GATGAGGAAGGCGTC   GCGCAGCA-CCCGCCG CATCTC CGACGAGCTGTTGCGC    TTGATGGCCAGCACG  51 375
JRI60_RS39190 9835167 .. 9835191 +  -6.3  -2.85813   CTGGTGGCCATGAAC          CGGAGCACCTG CCG CGGGTCCTCCA          TCATCTTCTTCAGCT  48 179
        galE 9838476 .. 9838522 +  -4.8  -2.70932   AGGCATCCACGATGA GCCGGCCGAGGGGCTCCAGCAG GTC CGGGTGGAGGCTCGTCTCCGGC TCGTTGAGCGCGAGG  42 214
JRI60_RS39215 9840595 .. 9840610 +  -6.1  -2.89564   TGCAGCTCGCTCGCC              TGCCC CCCTGC GGGCA               TGTGTGCCGTACAGG  48 150
JRI60_RS39220 NONE
JRI60_RS39225 9844437 .. 9844449 +  -9.1  -3.01712   GCGGCGCGCGGGCTC                TCGCC CTC GGCGA                TGTTGCCGACGGCCG  54 489
JRI60_RS39240 NONE
JRI60_RS39245 9847752 .. 9847791 + -19.2  -3.53012   GCTTCACGCTGACAT  CAGACGCGCCCTCCGGTG GAAA CGCCGGGGGGCGCGTCGC   TTTCCGGCACAGCGC 100 48
         dps NONE
JRI60_RS39255 9848950 .. 9848995 + -13.3  -2.71011   CTTGCCGTCCTTCAA GGAAGGGAACGGGCAGCCGGG AGTGCG CCCGGATGCCCG--CCCGTCC TGATTCAGCGCGCCT  67 61
JRI60_RS39270 9854950 .. 9854969 +  -3.4  -2.71144   CGCCGAAGAGCTGCG            CGTACACC CAGC GGCGCACG             TGCTTGCCGGCCGTC  40 515
JRI60_RS39285 NONE
JRI60_RS39290 9857420 .. 9857451 +  -6.5  -2.71364   AGACCCTGACACACA      GGAGCGCCCCGCCG CGCTA TGGTGGGGA-CTCC      TGCTTCCCGGAGTCC  47 32
JRI60_RS39295 NONE
JRI60_RS39300 NONE
JRI60_RS39305 9860791 .. 9860806 +  -5.4  -3.14931   GCTCGTGCGGGTGAC              GG-ACCC CGG GGGTGCC              TTCCTGGCCGCTGCC  49 44
JRI60_RS39310 NONE
         zwf NONE
JRI60_RS39320 9865916 .. 9865937 + -15.1  -3.52204   CAGAGCCCGCAGGCC           GGGCCTCCC GAGA GGGGGGCCC            TTCCTTTCCCCCTCC  81 45
JRI60_RS39325 NONE
JRI60_RS39335 NONE
JRI60_RS39340 9870702 .. 9870729 +    -9  -2.87132   AGGCGAGCTCCGGCG        CGGCGGTTCCCG CCTT CGGCAGACGCCG         TGTCTGCCAGGCCGC  53 427
JRI60_RS39395 NONE
JRI60_RS39400 9884351 .. 9884363 +  -4.8  -3.27808   CGCCCGCCCGCTGGA                CGAG CAGGT CTCG                CTTTTCTCCCTTGAG  49 48
JRI60_RS39405 9885419 .. 9885469 +  -6.8  -2.78463   CACGACCGAGGAAGT CCGCCTG-GGCTGGCGCGAGCAGC CACAC GC-GCTCGTGCCACTTGCGGGCCG TCTCGTCCGGCGAGT  46 259
JRI60_RS39435 9892127 .. 9892142 +  -3.9  -2.73124   CCGGTGGGGGGTTGA              GGGTG GCATCG CGCCC               ATTTCAAGCCTCGGG  41 26
JRI60_RS39440 NONE
JRI60_RS39475 NONE
JRI60_RS39480 9903264 .. 9903283 +  -3.4  -4.08216   CCTCGGGCATCCAGG            CAGCCAGC CCGA GCTGGCCC             TTTTGCGGGAAATCA  59 124
JRI60_RS39485 NONE
JRI60_RS39490 NONE
JRI60_RS39495 NONE
JRI60_RS39500 9911276 .. 9911289 +  -5.2   -3.4247   GGACTAGCCGACCAC               CCGG TTACGC CCGG                TCTTCTTCGCCTTGT  53 131
        glgC 9913502 .. 9913515 +  -3.7  -3.31461   CCCAAGGGCATGAAG               GTGGC CTGA GCCCC                TTCTCCCCCTGGATG  47 17
JRI60_RS39525 9917871 .. 9917881 +  -6.8  -3.28712   GGTTCACCGCGCGCA                 GCAG ATC CTGC                 TTCTCGCGGAACGGG  53 131
JRI60_RS39535 NONE
JRI60_RS39540 9921449 .. 9921459 +  -4.6  -3.29144   CCGGCAACGGGCGGT                 CGTG TAG CGCG                 TTCTCGACGGACTCA  49 19
JRI60_RS39555 NONE
JRI60_RS39560 NONE
JRI60_RS39565 NONE
JRI60_RS39570 NONE
JRI60_RS39575 9929392 .. 9929412 +  -8.9  -3.29144   TGGACACCGTTGATG            GTCTCCGGC TCG GCCGGGCAC            TTGTCGGCCGCGTCC  58 469
JRI60_RS39595 NONE
JRI60_RS39600 9937825 .. 9937854 + -11.4  -2.78384   CCTGAACCCTTTCCA       GCGC-CGGTGGCC CCCCA GGACACCGCGCGC       TATGGTCCCGCCCCG  62 36
JRI60_RS39605 9939870 .. 9939885 +    -6  -3.54951   AGCCCTCATGTTGCC              GCCGCC AGGG GGCGGG               TTCTCTGATAAGGTC  56 79
JRI60_RS39610 9941639 .. 9941662 +  -3.8  -3.63782   CGCCCCCGGGACGGA          CGTGT-GCCAC CAT GGGGCCACATG          TTTCCCCTGGTGTTG  54 47
JRI60_RS39615 9942732 .. 9942742 +  -2.4  -2.83271   GGACGGCGAGCGGAA                 TGGG AAG CCCC                 TGATTGTGGACCTCC  39 276
JRI60_RS39635 NONE
JRI60_RS39640 NONE
JRI60_RS39645 NONE
JRI60_RS39650 9953468 .. 9953497 +  -5.5  -2.82015   CATGGCTGGTCGCGG       CCCTGGCCGAGGC CGTC GTCGCCGCCAGGA        TCTGGTGCATGTCCC  44 219
JRI60_RS39660 9954588 .. 9954604 +  -7.9  -3.21747   ACGGCGGGCTGCGCT              GGTCGAG CTC CTCGCCC              TTCATGGTCAGATCC  54 264
JRI60_RS39670 9955423 .. 9955458 +  -6.8  -3.14564   AGCCTGATCTCCTTC    GTGGTGCGCCGG TTCCTCTGACCC CCGGCGCTTCAC     TTCATCGAAGCCTCG  52 5
JRI60_RS39675 9956374 .. 9956390 +  -6.5  -3.05268   CAGCACCGGGTCCAC              GCGCG CCAGGTA CGCGC              TGTTGAAGGTCATTC  49 291
JRI60_RS39685 NONE
JRI60_RS39690 NONE
JRI60_RS39695 NONE
JRI60_RS39700 9960230 .. 9960245 + -10.4  -2.70932   CGCGTGCCGTCCGTC              CGAGGC ACGC GCCTCG               TGGTTCCCCAGCGAG  57 62
JRI60_RS39705 NONE
JRI60_RS39710 9962758 .. 9962790 +  -3.4  -3.03124   GGGCCCGTGGATGTC      CCCTCTCCCT CTGGGAGAGGGCT AGGGTGAGGG      TCTTCCCCCCTGGAG  42 83
JRI60_RS39750 9970072 .. 9970112 + -12.7  -2.73441   GTGTGTGAGGCGGTG GCGAAGGAGGCCGGGTGCCC GAAA GGGT-CCCGGCCT-C-TCGC ATTTCCAGCCTCATC  65 56
JRI60_RS39755 9970224 .. 9970239 +  -4.6  -3.06831   CAGCGTCCCCACTCG              GCGGTG GAAG CACCGG               TTCGCTGACAATTGA  45 30
JRI60_RS39760 NONE
JRI60_RS39765 NONE
JRI60_RS39770 NONE
JRI60_RS39775 9970610 .. 9970623 +  -2.3  -2.56011   GGCCGTCGGTTCGAA               TCCGG CCAT CCCGA                CTCTGTTTGAAGTTG  38 12
JRI60_RS39780 NONE
JRI60_RS39785 NONE
JRI60_RS39790 NONE
JRI60_RS39795 9970973 .. 9970985 +  -3.3  -2.63596   CGGGGTTCGACTCCT                CGGCG GCC TGTCG                TCATCTGCACTGCAA  39 9
JRI60_RS39800 NONE
JRI60_RS39805 NONE
JRI60_RS39810 9973585 .. 9973602 +  -7.7  -3.14132   GTGGCCAATGCCCCG             CT-CGGGC ACC GCCCGGAG             TTGCTCGCGCACGGC  54 440
JRI60_RS39840 NONE
JRI60_RS39845 10012985 .. 10013027 +  -3.9  -2.72144   GCCCGCGCGATAGGG GCGGAAAT-GGCTCCGGCTC GGGA GTGCCGGGGCCCACCACTGC GTTTCAGCACGCTAG  41 70
JRI60_RS39850 10015979 .. 10015992 +  -2.3  -2.83012   AGTTGGCGCGAAGTG               CGACC GGGA GGTCC                TCTCCTCGTCGCGTT  40 99
JRI60_RS39855 NONE
JRI60_RS39865 10020228 .. 10020250 +  -9.8  -2.71731   CCACCACCACCGAGG           GCAGGGACGC ACC GTGTCCCTCC           TGCTTCACCGGTCGC  54 139
JRI60_RS39875 NONE
        argJ 10024589 .. 10024605 +  -2.2  -2.87132   TACCGCAGCTGAACA              GCGG CTCCAGCCT CCGC              TATCTGGCGGGGAGC  40 29
JRI60_RS39885 NONE
JRI60_RS39890 10026995 .. 10027032 +  -8.2  -2.70932   CCTGCTGGCCCACGA   GGAGGAGCGTCGGCAC CTGGAT GCGCCGCAGCACCTCC    TCCTTCACCACCGCC  51 179
JRI60_RS39915 10032785 .. 10032812 +  -3.3  -2.57132   AGACTTGTGGCTCCT        CGGCGGCGAGGC CCACC GTCACGCC-CTG        CTTCTGCCCCACCCG  39 360
JRI60_RS39930 10035458 .. 10035480 +  -6.8  -3.06302   CTGAAGCCCACGCGC           TGACCCGGGG ACG TCCCGGGACC           TTCCCTCGCCGTGCT  51 23
JRI60_RS39935 10038017 .. 10038031 + -11.4  -3.35813   GAGCGCGTACTCCCA               GGGGTG GGT CACCCC               TTCCTTCCCATCGAG  67 164
JRI60_RS39960 10043369 .. 10043404 + -16.8  -4.56597   TCTGGCTCGACGGAC    CCACGCCCCCGGTCAC ATCC GTGGCCGGGGGCTTCG     TTTTTCGGGCACCGG 100 55
JRI60_RS39965 NONE
JRI60_RS39970 NONE
JRI60_RS39975 NONE
JRI60_RS39980 NONE
JRI60_RS39985 10050752 .. 10050764 +  -4.7  -3.62849   TCCAGCTCGCGCGCT                CGGGC TGA GCCGG                TTGTGCTTTCATCCA  55 18
JRI60_RS39990 NONE
JRI60_RS39995 10053877 .. 10053910 +  -2.9  -3.38272   TGGAGTTCTGCTCGA     CTCCGCCTACTTCCCG ACC CGGGT-GAGGGTGGCG     TTCTGGATGATGGTG  48 513
JRI60_RS40025 10060400 .. 10060418 +    -3  -3.02511   CCCTTCACATCACGA             CACGAGGA GAA TCCGCATG             TCTTCCACCGATGAC  42 49
JRI60_RS40030 10060973 .. 10061007 + -12.9  -2.62616   GGCCAGCTCGGGCGA    GTGGCGTGAGAGCTCC TGGT GCAGCTC-CACGCCGC     TCATCTCCGGCATCA  62 190
JRI60_RS40045 NONE
JRI60_RS40050 10064602 .. 10064612 +  -5.4  -2.73364   CCATATATGTAGGCG                 CATG CTC CATG                 TGATTCCCCTGGGAG  45 100
JRI60_RS40055 NONE
JRI60_RS40060 NONE
JRI60_RS40065 NONE
        rimO 10069348 .. 10069372 + -13.6  -5.04601   ATCGGGCAGTTGGAA         GGCGGTCCTCC CCAT GGAGG-CCGCC          TTTTTGCTTTCTCAG 100 70
JRI60_RS40125 10077269 .. 10077282 +  -5.2  -3.16683   GACGGCTACAGTGTG               CGCG CCATGT CGCG                TTCCTCCCGTCGCAT  49 82
JRI60_RS40130 10078285 .. 10078302 +  -2.6  -2.70932   GAACCCGGTGAGCAG             CAGCTC CGCCGA GAGCAG              TGGTTCAACGAGGGC  38 73
JRI60_RS40135 NONE
JRI60_RS40140 NONE
JRI60_RS40145 10083125 .. 10083137 +  -9.1  -2.62184   AAGATGAAGGACGTG                CCCTG GCC CAGGG                TGCTCTCCACCCGGA  50 67
JRI60_RS40190 10094211 .. 10094227 +  -3.6  -3.16564   GCTCCGCCAGCACCT              CCGGCA CCACC TGCAGG              TTGCTCGCCTCCCGG  45 376
JRI60_RS40235 10104964 .. 10104987 + -15.3  -3.30028   CGGGATGTGCGGGAG          GGAGGCCCC GGGGAG GGGGCCTCC           TTCGTGTCAGTGTTT  80 42
JRI60_RS40240 10109802 .. 10109831 +  -8.5  -4.63218   TCGCCCCCAGGGTGT       GAGCGGCGTGAAGC ATT GCATCCCGCC-CTC       TTTTCTTGAGAGGGC  83 24
JRI60_RS40245 10111460 .. 10111478 +  -3.1  -3.57389   GCGAAAGTGAGGAGC             GAGTCAT GCGCA ATGCCTC             TTGTCTGATGATGTT  49 31
JRI60_RS40250 NONE
JRI60_RS40255 NONE
JRI60_RS40260 10114340 .. 10114358 +  -5.8  -3.09933   CACGGCGATCACCCC             GAGCGCGG TGG CCACGCCC             TTGCCTCCGTTGAGC  49 191
JRI60_RS40275 NONE
JRI60_RS40280 10116619 .. 10116654 + -15.4  -3.31792   CGGGCCCGATCGTTG    GCGAGCGCGGCGAGCGC GGT GCGGTCGCCGAGCT-GC    TTGTGGGCGTGCTCG  75 308
JRI60_RS40305 10124388 .. 10124398 +  -2.4  -3.01791   GGCTCCCCGCCTAGT                 CGTC ATT GCCG                 TATTCCACCCGCGCT  41 47
JRI60_RS40310 10125183 .. 10125196 +  -5.9  -4.25104   CGGGGACCCCACGTG               GGGCG GGCA CGCTC                TTTTCCTGCAACAGG  70 87
JRI60_RS40315 NONE
JRI60_RS40320 10126163 .. 10126208 + -17.7  -2.73875   CGTGATTCACAACCA GGGGCTCGTCGGCTA-GAGTGT AAA ATTCTCATGGCCGACGAGCTCC TCGTCTTCGAGCAGA  85 47
JRI60_RS40325 NONE
JRI60_RS40335 NONE
JRI60_RS40345 10131555 .. 10131565 +  -2.4  -3.15861   CGAGTGAAACGCGAG                 CGGC ACG GCCA                 TTGCTCAAGCTCCTC  42 180
        recA 10133129 .. 10133139 +  -8.2  -2.78935   CAGCCGGGCATCGAG                 GCGG ATG CCGC                 TGTCCTCGCGGGTGT  51 460
JRI60_RS40375 10138314 .. 10138342 +  -2.3  -2.61383   GCGGCATTCTCCCGC       GCCGTG-AGCGC ATCCGC GCGCAGCACGCC        ATTCTCCATGGCGAT  38 156
JRI60_RS40385 10140252 .. 10140277 + -18.3  -3.68359   AGCCAACCTTACTGG         GGGCGTCGTCC GAGA GGACGGCGCCC          TTGTCGTTTTCCGGC  93 64
         nth 10143507 .. 10143525 +    -8  -4.05714   GGATGGAGTCGTCCA             CCCGGGCC ACG GGCCTGGC             TTTCTGCTTCAGGAT  69 446
JRI60_RS40410 10144915 .. 10144938 + -13.2   -2.8655   CCTGCGGCATCCCCG          CGC-CGAGCAG CAA CTGCTCGAGCG          TCTGCTCTCCGTCGA  65 427
JRI60_RS40480 NONE
JRI60_RS40490 NONE
JRI60_RS40495 NONE
JRI60_RS40500 NONE
JRI60_RS40505 10167801 .. 10167831 +  -6.8  -3.10245   GCAAGCCCTAATCCC       CTCTCCCCCTGG GAGAGGG TCAGGGTGAGGG       TATGTGTTCCAGTGC  52 30
JRI60_RS40515 NONE
JRI60_RS40520 NONE
JRI60_RS40525 10170726 .. 10170739 +  -5.9  -4.07568   CACCGCGCCACGCTC               GGCTC GCTC GGGCC                TTTTCCCCGGGGGAC  66 69
JRI60_RS40530 10172461 .. 10172489 +  -3.8  -3.90744   TGAGTTGCATCTCGA        TGAGGAGCAG CTCGTCACC CAGCTCCTCG        TTGTTTCCAGCGGCA  59 187
JRI60_RS40545 10174934 .. 10174955 +  -5.1  -3.63515   GTGGGCGGAGATGAC           GCTCGCC ACGCAGCA GGTGAGC            TTCTTGCCGGTGGGG  57 150
JRI60_RS40555 10179203 .. 10179240 + -14.2  -3.53012   AGTCCGCTTCCCACG   T-CAGAGGGGCTCGTCG ACTCC CGACGGGCCCCTCCGCA   TTTGGCCACCCCGGC  78 44
JRI60_RS40585 10186893 .. 10186903 +  -4.6  -4.36914   CCTCTTCCTCGAAGA                 GGTC CGT GGCC                 TTTTGTAGAACGGAG  69 454
JRI60_RS40600 NONE
JRI60_RS40605 NONE
JRI60_RS40610 10190165 .. 10190222 +  -9.8  -2.61695   GAAAAAAAAGCGGCG GCCTTCTTCGCGAAGGAGACCTCGAA GTGAAG TTCGAGTTCATTGACGCGGAGAGGGC CTGTTTCCCCATCGA  57 153
JRI60_RS40615 10191067 .. 10191084 +  -9.1  -3.62522   TCGTACCAGTTGTGG             TGCCAGG TCAT CCTGGCG              TTGTTGGCGAAGTTC  64 384
JRI60_RS40630 10197326 .. 10197343 +  -4.7  -2.85351   ACGCGTACGTCCCCT             TGCGCAC CCCG GAGCGCG              TCTGGTCTCGCAGCA  44 436
JRI60_RS40640 NONE
JRI60_RS40645 NONE
JRI60_RS40650 10201083 .. 10201101 +  -4.5  -3.40403   CCCCGCCCGCACGTC             CACCACC ACCGC GGTGATG             TTGTCGTGCCCCCCG  51 50
JRI60_RS40660 10202670 .. 10202699 +  -6.3   -3.8211   AGGTCCGCCCGCAGC       GCTGCGGCGCTCGG GTA CCGGTCGTC-CGGC       TTCTTCTGCATCAGC  62 93
JRI60_RS40685 NONE
JRI60_RS40690 NONE
JRI60_RS40695 10210558 .. 10210588 +  -9.6  -3.17051   ACACGGCAGGGGATG       CCGCTCTTCTTGAG GAT CTCCGGCAGGGCGG       TGTTGGTGGTGGAGG  59 489
JRI60_RS40705 10211690 .. 10211700 +  -6.8   -3.3344   AGGCTTCGGTTAGGA                 GAGG CGC CCTC                 TTATGCAGCTTGAAT  54 146
JRI60_RS40710 NONE
JRI60_RS40725 NONE
JRI60_RS40730 10217598 .. 10217623 +  -3.9  -3.30124   CGTACACCAGCAGCC         CT-CCGGGGGGC ACC GACTCCTGGCAG         TTCTCCAGGATGCGC  47 253
JRI60_RS40755 10223040 .. 10223069 +  -6.3  -3.53012   GCTTGACGAGCGGAC       CCGTCTCCCCG TGTGATTC CGGGATGACGG        TTTCCAGCCCAGGCG  56 76
JRI60_RS40760 NONE
JRI60_RS40765 10226574 .. 10226593 + -10.6  -2.73364   ACTAGTGAGGACCCG            GGGCGTGG TTGG CCTCGCCC             TCCTTGACCTCCACG  60 52
JRI60_RS40835 NONE
JRI60_RS40840 10242696 .. 10242720 +  -9.9  -3.96068   GGGTACCCTCACCCT          GACCCTCTCCC GGA GGGAGAGGGGA          TTGTTGTTGAGCTCA  77 107
JRI60_RS40880 10256181 .. 10256204 +  -3.8  -3.22298   GGAAGGTGCCAGGGA          GGCCCG AACGGACTATGA CGGGCC           TTCATGCTGCCTGAA  47 46
JRI60_RS40885 10257605 .. 10257619 +  -2.7  -3.86015   TTGGCTGGTGCATGG               CGCCG AATCC CGGCA               TTTGTCCCCACCCTC  56 64
JRI60_RS40890 NONE
JRI60_RS40895 NONE
JRI60_RS40910 NONE
JRI60_RS40915 10264724 .. 10264751 +  -2.6  -3.25015   AACTGAGGCGCCTCA        GCGAACCTCGGGG CAG TCCC-AGATGCGC        TTCGTGGTGCTTCCC  44 35
JRI60_RS40930 10293329 .. 10293348 +  -4.8  -3.61398   CACTGGTGGCCTCGT            CCAGCACC AGCA GGCGCGGG             TTCTTGAGCACCGCG  55 474
JRI60_RS40950 10298516 .. 10298573 +  -7.7  -3.37344   GCCTCTGGGAGAAAT CCAGCGGCAGCTC-GACCTGGAAGCCTC GTGGG GAGGCGGG-AGGTCCGAGC-GCCGCGGG TTCATTCCGTGGCGG  59 279
JRI60_RS40955 NONE
JRI60_RS40960 10302224 .. 10302245 +  -6.5  -3.13403   AACTCCCTGGCCTGG           GTGGCGG ACCAACTG CCGCCGC            TGTTCATCCCAGGAC  51 46
JRI60_RS40965 10303684 .. 10303715 + -14.5  -3.14132   CGGTGGAAACGACAA     CGCCCGGGG--GCCT CGAA AGGCATCCCCGGGCG      TTGATGAGGACCGAG  76 48
         ggt NONE
JRI60_RS40990 NONE
JRI60_RS41000 NONE
JRI60_RS41005 10312051 .. 10312061 +  -2.4  -2.81464   TGGAAGACTCTTTCG                 AGGC CCC GCCA                 TGTCCTACATCCTGG  40 113
JRI60_RS41010 10312918 .. 10312939 +  -2.1   -3.2614   CCGCATCAGCTCCAG           GGCGGAGGC CTCG GCTTGAGCC            TTGGTCTCCGAGGTG  44 505
JRI60_RS41020 10314327 .. 10314365 +  -5.1  -3.61715   CGCCGGGGAGGAAAA  GCGCCGG-GGGGCGGCATG AAC CGGGCGGCCGCGCCGG-GC  TTCTTCCGGCACCTG  54 7
JRI60_RS41025 NONE
JRI60_RS41030 10316985 .. 10316996 +  -7.2  -3.64703   CCCGTACCCGCAGAC                CCCC TTCC GGGG                 TTTGCGTGGCGCGGA  61 180
JRI60_RS41045 10319763 .. 10319814 +  -4.7  -2.75074   AGCTTCTGACAGCCC CTCGCGGCCGGCCGGGGCCCCGG CTCACT CCCCGGCCCCGCCCGCCTCCTCG TCCTCTTCCGGTCCC  43 32
JRI60_RS41055 10321973 .. 10322017 +  -4.1  -4.06502   AGTCGCACCACACGG TCGTGGGGGCCCCGGCT CCACTGGAACT GGCCGAGGCCCCTGTGC TTTCCTTTCCGGATG  61 52
JRI60_RS41060 NONE
JRI60_RS41065 10323250 .. 10323271 +  -3.6  -3.64703   CGCGGCCTTGAGCTC           GTCCTCGG TCGTGC CCGAGCGC            TTTGCCTCGGCGGGC  53 98
JRI60_RS41100 10330147 .. 10330157 +  -2.4  -3.61715   TGCCATCCCCGAGCT                 CGCC GTG GGCA                 TTGTTCCCCCAGGTG  51 257
JRI60_RS41110 NONE
JRI60_RS41115 10335470 .. 10335487 +  -4.1  -3.67296   CCACTCTTGGGCCCG             GTCC-AGG TCA CCTCGGGC             TTTCCGTAGCTCGTC  55 211
JRI60_RS41140 10345137 .. 10345148 +  -7.2  -2.52464   TCTGGCCCGCGAGCG                CCCG ACAT CGGG                 TAGATTGCCGGGCGC  47 165
JRI60_RS41145 10345448 .. 10345487 +  -8.5  -3.50853   GCTGGCGAGGAGCTG  CCGCAGGCGCGAGAG GTGACGCTGG CTCTCGCGCTCGAGG   TTGTGATTGGCCGCC  62 87
JRI60_RS41155 10353503 .. 10353527 +  -7.8  -2.98823   ACCTGCCCTCCGGGG         CGGGGCA-GGC GTCG GCCGTGCCCGG          TGTGTATGCACCAGG  53 62
JRI60_RS41160 10355317 .. 10355327 +  -6.8  -3.37796   TGACCAGGATCATCA                 GCAC CTT GTGC                 TTGTCCGTCATCAAG  53 397
JRI60_RS41175 10359404 .. 10359421 +  -3.3  -3.45023   GTGTCCCCTACTCCC             GCGGCCAG CAC CCGGC-GC             TTGTACTCGTCATGG  50 481
JRI60_RS41190 10362968 .. 10362988 + -14.1  -3.14132   CGCGCTCGGGAGCAA            CTGGTCTGA CTG TCAGACCAG            TTCGTCCGGACCGCG  73 278
JRI60_RS41210 10367473 .. 10367493 +  -3.9  -3.31792   GCCATGGCCTGCCGC            GCGGTCG CGAACGC CCACCGC            TTCTGCGACTCGTCG  47 422
JRI60_RS41225 10369138 .. 10369157 + -10.6  -3.14132   TGACGAGGCCTCCCT            CGGCACGG AGCA CCGCGCCG             TTCGTCGCGGCGGAC  62 328
JRI60_RS41235 10371427 .. 10371449 +  -7.6  -3.53091   GCCTGGGGCACCGGT           CCTGTTCGAG AAT CGCGAGCGGG           TTTAGCACCGAACGT  60 505
JRI60_RS41270 NONE
JRI60_RS41275 NONE
JRI60_RS41280 NONE
JRI60_RS41295 10384590 .. 10384600 +  -6.8  -3.28712   AGGCGTACAGCACCC                 GCTC GAA GAGC                 TTCTGCCACAGCGGC  53 71
JRI60_RS41320 10390429 .. 10390443 +  -2.7   -3.1372   TTGAGCCCCGCGATG               CGCCG CAGCT CGCCG               TCTTCATAGGCGCTG  44 139
JRI60_RS41335 10394021 .. 10394037 +  -3.5  -3.66018   GCGTCATCAGCTCCA              CCACCGC GGC GCGGGCG              TTCTTGCCCTCGTAG  53 86
JRI60_RS41345 NONE
JRI60_RS41350 NONE
JRI60_RS41355 NONE
JRI60_RS41360 10400186 .. 10400211 +  -8.1  -3.35679   GGCGCGGCTCGAGCG         CGGCGCCGGGG TCGT CCTCGTCGCGG          TTCTGCGTGGAGGCG  55 274
JRI60_RS41370 10402448 .. 10402464 +  -3.5  -2.70932   GAGGCACCGTGAGGA              GGCCGGG TTT CCCCTCC              TGGTTCGCGGAGGGG  41 39
JRI60_RS41375 10403567 .. 10403592 +  -6.1  -3.36327   AGTCCAACCGGCTGT         TCAGCCCGTCGA ACG TCGA-GGGCAGG         TTCTGCGTGGGCTGC  53 389
JRI60_RS41385 NONE
JRI60_RS41390 10409846 .. 10409878 +  -2.7  -3.02511   CGGGCTGGATGTCCC     G-GACGCGCACCGTG CCCAC CGCCGTGC-CGTCGC     TCTTCCACAGCTCGG  41 457
JRI60_RS41425 NONE
JRI60_RS41430 10420083 .. 10420100 +  -5.5  -2.79183   TGACGAAGCGCGGGC             TGCTCGC CTGG GAGAGCA              TCTGCTCGAACTCCG  44 275
JRI60_RS41440 NONE
JRI60_RS41445 NONE
JRI60_RS41450 NONE
JRI60_RS41455 10428519 .. 10428563 + -20.1  -3.09492   TGAGACGCGGTACCC CGCAGACGGGGCGGGAGGCTC CCTTC GAGCC-C-CGCCCCGTCCGCG TCTTCCCCTTCAAAC 100 38
JRI60_RS41460 NONE
JRI60_RS41465 NONE
JRI60_RS41470 10431863 .. 10431874 +  -2.2  -2.53822   TTTGTCAGTCCGGAA                CTGA CGCC TCGG                 ATGTTCTCAACTGAA  38 49
JRI60_RS41475 NONE
JRI60_RS41480 10433394 .. 10433418 + -14.3  -3.15861   GCAGGCCTGAAACGA          CCCGGGGTC CTGCTTC GACCCCGGG          TTGCTCAGACTCCTC  73 31
JRI60_RS41490 10435377 .. 10435414 +  -3.1  -3.62046   CGTTTCCGCCAAGCG   GCATGCGGGCGCCAACG ATGA TGCCGTCGCCCGTGAGC    TTGTTCCACAGGTAG  53 136
JRI60_RS41520 10445007 .. 10445028 +  -5.1  -3.01712   GAAGGTGACGACCGT           C-TCCTCGCC CGC GGCGATGACG           TCTTCCAGGAAGAAG  47 240
JRI60_RS41530 10445903 .. 10445923 +  -5.3  -2.79501   AGGACTTCGGATAGC            CGGTGTGCG CGG TGCGCAGCG            TGTAGTCCGCCTGTC  44 156
JRI60_RS41560 10456338 .. 10456360 +  -8.5  -3.14132   CAAGACGAAGCGGAA          GTGAGGCAGG GCGA CCT-CCTCAC           TTCATAGGGGGGAAC  56 22
JRI60_RS41565 10457420 .. 10457431 +  -7.2  -3.37245   TCGTCCTGCTCCTCG                GGCG TGAG CGCC                 TTCATGTTCCCGTGC  56 89
JRI60_RS41575 NONE
JRI60_RS41580 NONE
JRI60_RS41585 NONE
JRI60_RS41590 NONE
JRI60_RS41595 NONE
JRI60_RS41600 NONE
JRI60_RS41605 NONE
JRI60_RS41610 10471401 .. 10471411 +  -6.8  -3.37796   TGACGAGGATCATCA                 GCAC CTT GTGC                 TTGTCGGTCGTCACC  53 481
JRI60_RS41630 10476543 .. 10476556 +  -3.7   -2.7898   GCCTGAGAATCCAAG               GCCGG GCAA CCGCC                TCATTCCGTATTGAA  41 35
JRI60_RS41635 10477178 .. 10477232 + -18.7  -3.02144   CCCACGAGCTGACGC CGTCCCATC-CGTTCACCCTGGAGCGC TCC GAGCCCCAGGGCGAACGCGATG-GACG TATTGCGCAACGTGA  85 105
JRI60_RS41650 NONE
JRI60_RS41655 NONE
JRI60_RS41660 10481699 .. 10481711 +  -3.3  -3.53012   CCTCGAAACATGTAT                TCGAG ATG CACGA                TTTGCGCGCGCCGGC  49 138
JRI60_RS41665 10484433 .. 10484445 +  -6.9  -3.25823   GGGACACGCCACCAC                GGCCT GCT GGGCC                TTCATGTCCAGGCCC  51 313
JRI60_RS41675 10486061 .. 10486076 +  -3.2   -3.7732   GATGCCCTTGGACTT              GCGGAT GGAC ATCAGC               TTCTTGATCTGCGCG  56 219
JRI60_RS41685 10487733 .. 10487746 +  -5.2  -3.35996   GCTTGGACTCCTTCG               GCGG ACGGGG CCGC                TTGTGCGTCACCATG  51 106
JRI60_RS41695 NONE
JRI60_RS41700 10490427 .. 10490463 +  -6.4  -3.42996   GATGAGCTCCGGCAT    GGACACCCGCTCCATC ACCCC GGAGAAGCGGGCGTTC    TTCTGCTGCATGCTC  53 524
JRI60_RS41730 10499076 .. 10499089 +  -5.9  -3.68529   CATGCCTGCATGGAG               GGCGC GAGA GCGTC                TTTCCCTGGTGCGCT  59 131
JRI60_RS41735 NONE
JRI60_RS41740 10499933 .. 10499976 + -13.1  -3.70902   AGTGAGCGACTCCCC G-GGCGCCGACCCCAACC-CG GCCA TGCGGACGGGGTCGGCGCCAC TTTCCATGTCCCCCC  79 47
JRI60_RS41745 10502573 .. 10502594 +  -2.9  -3.53012   CTCGGAGCCCTCGGT           GGCCT-TCAG CCC CGGGCAGGCC           TTTCGAGCCGCGGCG  48 451
JRI60_RS41755 NONE
        pdxH 10509268 .. 10509278 +  -2.4  -3.30124   GGTAGCCGTAGAACC                 CGCC CAT GCCG                 TTGTCGGCGATGGAG  45 377
        hemG 10511406 .. 10511428 +    -9  -2.78384   AGCCCGTGAGCCTCA           CCGCCTGGGC CGG GACCGGGTGG           TATGCTGGGACGCGG  55 246
JRI60_RS41795 10512608 .. 10512621 +  -5.2  -3.70037   CAGGTGTCAAGTATC               GCGC TCCCAC GCGC                TTTCGGTGATGGTTG  57 137
JRI60_RS41800 NONE
JRI60_RS41805 NONE
JRI60_RS41810 10518315 .. 10518329 +  -4.2  -4.07885   TTCCACCACTACTTA               GTTCGA GTT TCGCAC               TTTTGGACGGGGGTC  61 332
JRI60_RS41835 10524029 .. 10524047 +  -3.1  -3.18582   GTTGGGAGCCAGGAA            CGGG-AGG AGTC CCTGCTCG             TTGGTCAATACGATG  45 408
JRI60_RS41860 NONE
JRI60_RS41865 10530046 .. 10530056 +  -3.2  -3.12351   GCGTCGCGAACGAGG                 CGCT CCC AGTG                 TTCCCTGTGCAGGAG  43 472
JRI60_RS41900 10537922 .. 10537955 +  -3.2  -3.04398   TACTACAACTAGTCG    TCGGGGACCCGAGACA CGGC TGTCA-GGGTCT-CGA     ATTTTCCACGGAACA  42 29
JRI60_RS41905 NONE
JRI60_RS41910 10539168 .. 10539204 +  -6.7  -2.82516   CCGATGTCCGCTTGA  TTC-CCG-C-CGCTCCCA GCGG TGGGAGCGCGTCGGCGGA   TGTAGTCATCCGCAC  50 26
JRI60_RS41915 10540866 .. 10540882 + -10.1  -3.09516   TCCCTCGCCGCCGAG              CGCTCCG AGG TGGAGCG              TTCCCTGCTCGCGAA  62 350
JRI60_RS41925 NONE
JRI60_RS41940 10548570 .. 10548596 +  -2.3  -3.26874   TCCCCGCCAACTACA        GCCTGGTCCGGTG ATT CAGCGGA--AGGC        TTCGTCCTACTTTCT  44 12
JRI60_RS41945 10549338 .. 10549352 +  -4.2  -3.16191   AAGTCACAGCCGAGT               GGCG TCGGATC CGCC               TTCGTGCACGTCTCC  47 187
JRI60_RS41960 10552049 .. 10552081 +  -5.3  -3.78934   GAGCCCTGCTCGCCG      TTGCTCCGGTCCCGC TGA GCGGGGCCCACGCCA      TTCTTCTGCGACACC  60 432
JRI60_RS41970 10554206 .. 10554218 +  -4.7  -2.73364   AGGGCCCCTCCCTCA                CTCGC CCA GCGCG                TCGTTCAGCTCGCCC  43 41
JRI60_RS41985 NONE
JRI60_RS41990 NONE
JRI60_RS41995 10557852 .. 10557862 +  -6.8  -3.28712   CCCGTCGCCGCGCCT                 CCGT GTG ACGG                 TTATCCAGGAGAGGC  54 91
JRI60_RS42000 NONE
JRI60_RS42005 NONE
JRI60_RS42010 NONE
        pdeM 10563903 .. 10563916 +  -3.8  -3.33492   TTCCAGCCCCGAACG               GCAG CCACGC CTGC                TTGTGCCGTCCCTCG  47 216
JRI60_RS42025 NONE
JRI60_RS42030 10566698 .. 10566746 +    -8  -2.75844   CGGACACCAAGGTCA TCCA-GGTGAACGAGCACACCGG CTGA CAGGCGTGCCCGTTCCCCCTGGC GTTTCACGTGCGCCG  51 0
JRI60_RS42055 NONE
JRI60_RS42060 10573884 .. 10573934 +  -7.3  -3.36878   AGGAAGGCCCGCTCA CACGCCCCGGGACCCGGTTCCCG CAGTC CATGAGTCGGGCGCCCGGGTGTG TTATCGCTCGATGAC  56 68
        rlmN 10575059 .. 10575072 +  -4.5  -2.73364   GAGCGCATCATCGAC               GTGTC CGTC GGCAC                TCGTTAGGATGACCC  43 45
JRI60_RS42070 NONE
JRI60_RS42075 NONE
JRI60_RS42080 10577299 .. 10577321 +  -6.3  -3.28712   CCGGGCGGGCTCAGT          GCAACG-CCCC TCC GGGGACGT-GC          TTCTGCCCGCCCACC  53 46
        gluQ NONE
JRI60_RS42095 NONE
JRI60_RS42100 NONE
JRI60_RS42105 10581720 .. 10581733 +  -3.7  -3.40403   GGTCGGCCAGCCCCT               CGGCG GCAT CGACG                TTGTCGTCGACGACG  47 365
JRI60_RS42120 10587585 .. 10587624 + -11.2  -3.55548   CTGAGACTCACCGTC  TTCCAGGGCCGTCCCGCC GTCA GGTGGGGCGGCCCCGCCG   TTTCCGGCCCTCTTC  70 60
JRI60_RS42125 NONE
JRI60_RS42130 10590019 .. 10590037 +  -3.8  -3.09492   GGCAGGCCGGGATGA             CGCTCG AAGAAGA TGAGCG             TCTTCCCGTTGGCCG  43 112
JRI60_RS42145 NONE
JRI60_RS42150 NONE
JRI60_RS42155 NONE
JRI60_RS42160 10603791 .. 10603803 +  -4.8  -3.61398   CGGCCTGAGGGCTCA                GACG TTGGC CGTC                TTCTTCCCGGAGCGA  52 33
JRI60_RS42170 10607278 .. 10607293 +  -4.6  -2.71712   GGCGGCGAGCGGATG              GACACG GCCG CGTGAC               ATTTGGCGCACCGGG  43 11
JRI60_RS42175 10609522 .. 10609557 + -16.2  -4.18401   CCAACCGAGCAGCCT    GGAGCGCCCGGTGTGAG TCC CTC-CGCCGGGCGTTTC    TTTTCCCATGTGTCA 100 62
JRI60_RS42180 10611500 .. 10611513 +  -2.3  -2.87132   GAAGACCTGAACCCG               AGGAG CCAC CTCCA                TGTATGAAGCGAGCC  40 31
JRI60_RS42185 10611967 .. 10611987 +  -5.3  -2.83715   CCCCGAGAAGGAGTG            CGTGATGGC CAC GCCACTGCG            TCTGCTGCTCATCGA  46 21
JRI60_RS42190 NONE
JRI60_RS42195 NONE
        radA 10620802 .. 10620834 +  -4.7  -4.16943   CCGCGACCCGTTCCG      GTAGGTTGTGCCGCA CCA TGCGGAAACTCCTAC      TTTTGCGGTCTACCC  66 76
JRI60_RS42235 NONE
JRI60_RS42240 10622368 .. 10622392 +  -7.1  -3.02829   CATGCACCGGAAACC          CGCTCGAAC GACCACG GATCGAGCG          TGTTGAGCCGCTCTC  49 129
JRI60_RS42260 NONE
JRI60_RS42265 10627166 .. 10627194 +  -7.4  -2.63913   TGGCCTTCCTCAGCT       CTGGCGTCCGGGCC CGA GGCA-GG-CGCCAG       TCCTGTGCCGTCATG  48 368
JRI60_RS42280 10635493 .. 10635514 +  -8.7  -3.54424   CCACATGAGGACGTT           TCCACTGCC ATGA GGCAGTAGA            TTTCCCGCGATAGGA  62 170
JRI60_RS42285 10638323 .. 10638336 +  -2.3  -2.71364   CAGCGCACTCCTCCT               GTGTG CAGC CACCC                TCCTTCGCACAGTGA  38 228
JRI60_RS42290 10639396 .. 10639411 +  -8.2  -3.21099   GCCCTGGATCTGCCC              CTCCGC CGCC GCGGGG               TTGATCGTCCGGCCC  56 381
JRI60_RS42310 NONE
JRI60_RS42315 10645610 .. 10645628 +  -3.1  -3.49951   AGGGGGCAGGTTCCA             CCTCC ATCCCCCTC GGAGG             TTCTCTCGACGTGTC  49 162
JRI60_RS42320 NONE
JRI60_RS42325 NONE
JRI60_RS42330 10650641 .. 10650671 +  -3.2  -3.07962   CCCACGGGATGTCCC       CTCTCCCCCTGG GAGAGGG TTAGGGTGAGGG       TCTTCCCCTCTGCCC  44 50
JRI60_RS42335 10651160 .. 10651211 +  -4.3  -2.74012   CCGCAGCGGCGCCTC GTCCACCCGCGC-CAGCGCCTCGTC CCAC GAC-AGCCACTGCGCGCCCGAGGAC TCATTCGGGTCGTGC  42 102
JRI60_RS42345 10653256 .. 10653269 +  -3.8  -5.40072   CGCGCGGCCAACCTC               CCGA AATCGC TCGG                TTTTTTTCGGCGCAC  90 163
JRI60_RS42350 10654553 .. 10654565 +  -3.3  -4.02817   GGGCGCCTTGAGGCC                CAGCG AGG CGATG                TTCTTCTTCTGGGCC  61 198
JRI60_RS42360 10656156 .. 10656180 +  -2.6  -3.39327   GAGCGCCGTATCCCG          GGCACGGGTG AGCAC CTCGCGGGCC          TTCTGCGTCTGGCCG  46 107
JRI60_RS42370 NONE
        rsfS 10658231 .. 10658245 +  -5.6  -2.64616   CCGCGGGAGAAGGTG               GCCTGA AGG TCCGGC               TCCTCTCGATAGGCA  44 20
JRI60_RS42380 NONE
         rnk NONE
JRI60_RS42400 10664099 .. 10664132 +  -5.9  -3.78953   CGCAGCCGCAAGGAA     TGAGCCTCGGCCAGA CTCG TCTCGGCTAGGCTCG      TTTCATGATCAAACT  62 23
JRI60_RS42405 NONE
JRI60_RS42410 10666129 .. 10666141 + -10.5  -2.82519   CCGCACCCGGGGCCG                CCCGG TGG CCGGG                TCCTTCATCTCCTGG  57 280
JRI60_RS42420 10668113 .. 10668134 +  -3.6  -3.08996   CGAAAGAAACGGAAA           GCACCTTG AGGATG CGTGGTGC            TGTTCCCTGAGCCTC  45 17
JRI60_RS42425 10668966 .. 10668988 +  -7.6  -4.15044   CCCGGCTGTTCACCC           GCGCCGGC TCTCCCT GCCGGCCC           TTTATTCCGACGGAC  69 102
JRI60_RS42430 10672708 .. 10672722 +  -9.2  -3.55622   GAACGTTGAGCCGGG               GGGGCC TCC GGTCCC               TTTCCGCGAATTCAC  64 32
JRI60_RS42435 NONE
JRI60_RS42450 NONE
JRI60_RS42455 NONE
JRI60_RS42460 10680705 .. 10680738 +  -2.4  -3.21099   CTGCTCGCTCTCCAC     GTGGATGTGTCCCCC GAGCA GGGTGACG-ATCTGC     TTCGTGATCCACAGC  44 96
JRI60_RS42470 NONE
JRI60_RS42475 10687552 .. 10687562 +  -2.4  -2.90392   GAGCTGCCCACCTGA                 ACGG GCT CCGA                 TGTCATTAGAACATC  40 26
JRI60_RS42480 NONE
JRI60_RS42485 10690709 .. 10690756 +  -6.9   -2.8805   CCAGGGGCCTCGTTC CTCGGACGACCGGGCGAGCGTGC CTCG GCCAGGT-GTCCGG-CGTCCGGG TGTCTGACACCTCGT  50 51
JRI60_RS42490 NONE
JRI60_RS42495 10693938 .. 10693981 +  -4.4  -2.78463   CCCGCTCTCGTCCAT GC-GCAGCTGCTGGTGCGTGG CCA CCACGTAGCCCAGGCTGCGGC TCTCGTAGAAGACGT  42 421
JRI60_RS42530 10700953 .. 10700969 +    -3  -4.63527   GGAACGACCCTGCCC             G-CCTTG ATGC CAAGGAC              TTTTTCCAGTCCTGG  71 510
JRI60_RS42545 NONE
JRI60_RS42550 NONE
JRI60_RS42555 10706763 .. 10706776 +  -3.7  -3.61398   CCACATCGAGCAGTC               GCGCG GCCT CGCTC                TTGTTACCCCCCACG  53 176
JRI60_RS42575 10710444 .. 10710481 + -21.3  -3.53091   TTCGTCTCGAAGCTT   CGATGAGGGCGCTTCCC GCGA GGGTGGCGCCCTCGTCG    TTTCAGGGGCCCGGT 100 50
JRI60_RS42585 10713970 .. 10714004 +  -4.3  -2.88579   TCATCCCGCCCCTGA    GCATCGA-GGACTTCA AACG TCATGTCCGTCGGTGC     TATCTCCCGAATTGA  44 54
JRI60_RS42590 10715127 .. 10715137 +  -8.2  -3.21416   ACCCGATGCGTCTTG                 GGCG CCT CGCC                 TTCCTCCTCCCGGTG  56 298
JRI60_RS42600 NONE
JRI60_RS42605 10721344 .. 10721384 +   -22  -4.05788   GGAAGCCCAGGTAGC GGGCTCGGAATCC-CGAGG AGAT CCTCGAGGGTTCCGGGCCC  TTTGCTTTGGCGGAA 100 71
JRI60_RS42610 10722079 .. 10722110 +    -5  -2.87014   ACTCTAGCCAGATAC      GAGGTGGGCCAG GCCGCTCG CGGGCTCCCCTC       TCCTTGTCCTGAGTT  44 72
JRI60_RS42615 NONE
JRI60_RS42620 NONE
JRI60_RS42625 NONE
        ectB NONE
JRI60_RS42635 NONE
JRI60_RS42640 10731702 .. 10731733 +    -5  -3.53012   GGAACGCGGCGATCT      CCCGGGCGA-GCTGC TCG GCGGCCTCGCGTGCG      TTTCCACGGGGCACC  51 236
JRI60_RS42690 10740269 .. 10740293 +  -4.1  -3.65522   GAGCTCCGCGCGGTT          CACCGGCCGGA GCT TCCGGAAGATG          TTCTTCACGTGCGTC  55 92
JRI60_RS42700 10742807 .. 10742825 +  -3.7  -3.51232   CCCCACTCTGACTGT             GTGGGGG ACTCG CCCCCGG             TTCATTTCCAGGGAG  51 213
JRI60_RS42705 NONE
JRI60_RS42720 NONE
JRI60_RS42725 10747453 .. 10747479 +  -3.5  -3.78934   ATGCGGAACTGCTCC         GCCGTCGACGG CCGTC CCGTCCCCGCC         TTCTTCTCGCGCGCC  56 425
JRI60_RS42740 10755797 .. 10755832 + -18.4  -2.65354   CACAGCCGGAGAGAA    G-CGGCGCGAGCAGG CAACCGA CCTGCTCGCGCCGTC    TCCGTTTCAAGTCCC  87 63
JRI60_RS42745 10756942 .. 10756975 + -10.4  -2.63596   CCTGACGCCGCGCAG    GTCTCCGTGCA-C-GG CGAG CCAGATGCACGGAGGC     TCGTGTGAGGTCCAC  57 36
JRI60_RS42765 10763186 .. 10763204 +    -8  -3.14132   GCGCAGCTTCTCGGT             CCTGGGCG CAT CACCCGGG             TTGGTCACCGCCACC  54 259
        prmA NONE
JRI60_RS42800 10773269 .. 10773283 +  -3.4  -2.77899   ATGGGATGGAGGTAG               ACGTCG TCG CGGCGG               TAGTTGCTGCGGAGC  40 418
JRI60_RS42810 NONE
JRI60_RS42815 10775633 .. 10775664 +    -2  -3.21747   AGCTGCGCGACACCC      GCCACTGAGTCCGC CCTG GTGGGGACGGCGGC       TTCCTGCTGAAGTCG  44 18
JRI60_RS42820 NONE
JRI60_RS42825 10776858 .. 10776886 +  -3.8  -4.63218   CCTCCTCGACGGTAA       CCAGGCGGGGAGC CCTG GTTTCCCGG-TGG        TTTTCTTGCCCCCGG  73 43
JRI60_RS42830 10778323 .. 10778336 +  -3.7  -4.59853   CCAGAGGAGAAACGG               CAGGG ACTT CCCGG                TTTTTGAAGGATTCG  73 147
JRI60_RS42835 NONE
JRI60_RS42840 NONE
JRI60_RS42845 NONE
JRI60_RS42850 10785608 .. 10785618 +  -2.4  -4.37886   CACAAATCCGTGGTG                 GCGG ATC CCTC                 TTTTCTGAAGGATCG  65 72
JRI60_RS42855 10786284 .. 10786312 + -13.2  -2.82635   CCGCTACGGCCGCCC       GGGA-GGCACGCC ATGA GGCGTGTCATCCC        TCTCCTCGTCACCGT  69 10
JRI60_RS42860 NONE
JRI60_RS42865 10788149 .. 10788161 +  -5.5  -3.36878   CTGGAGGGGCCAGTG                TCCTC ACG GGGGA                TTGTCAGTGAGTGCC  53 3
JRI60_RS42875 NONE
JRI60_RS42880 NONE
JRI60_RS42885 NONE
JRI60_RS42890 10793171 .. 10793192 +  -4.3  -3.14344   AAGCTCGAGGAGCAC           GGGCTGGTG TGAG CCTCAGTCC            TTCGTCGCGACGATG  47 14
        rsgA 10799185 .. 10799203 +  -5.2  -3.48395   ACGTGCATAGGTATC             GGGGGG CATGGAA CCCTCC             TTGTGTCGGGGAAGT  53 373
JRI60_RS42950 10810039 .. 10810052 +  -5.2  -3.35679   CGGTGGACTCCTCTC               CCGG ATTCAA CCGG                TTCTGGATGGCCAGG  51 176
JRI60_RS42965 10811925 .. 10811960 +  -7.5  -3.27475   ACACCTGCCGCAGCG    TCTGCGTGGCGGCGCG GTAGA TGCGCC-CGGCGCGGA    TCTTGTCCTGCAGGG  54 490
JRI60_RS42975 10815440 .. 10815453 +  -5.2  -3.14132   ATGACAGACGAGCAG               CGGG CGCCAT CCCG                TTGGTGCGGCGCACG  49 297
JRI60_RS43005 10821691 .. 10821734 +  -3.6  -3.53012   TTCTGACACAGAAGT GACAGAACGCCTCCCCGGGG AAAT TTTAGGGGGGGCGTTCACGC TTTGAAGGAGCGCAC  51 61
JRI60_RS43010 NONE
        accC NONE
JRI60_RS43020 NONE
JRI60_RS43025 10826257 .. 10826295 +  -7.3  -2.89564   GTGCTGTGAGAGAGC   CACTTCCCCTCTCCCTC CGGGA GAGGGACGGGGTGAGGG   TATGTCGAATCCCGG  50 32
JRI60_RS43030 10827176 .. 10827192 +  -3.7  -3.05384   ATTCAATCTCGACAG              GGATG AACTGGA CATCC              TTCACTCCGAGCCGC  43 344
JRI60_RS43050 10830492 .. 10830503 +  -2.2  -3.53031   TGGAGGCGCCCTAGG                GC-GC CCG GCAGC                TTGCTTTCCCATGAC  48 27
JRI60_RS43055 NONE
        yhbY 10834002 .. 10834017 +  -2.5  -2.57344   GCCCCGCCACCGCCC              GC-GCG TAGGC CGCCGC              CTTCTCCACGCCCTC  38 476
JRI60_RS43070 10836550 .. 10836577 + -12.1  -2.58544   CGGAGGACATTCCGA        GCCGC-TCCATC ACCTG GATGGACGCGGC        GTTGTCGAGGTCCGC  59 167
        kdsB 10842899 .. 10842923 +  -8.4  -3.14344   GGTGATGCGCGGCTG          AGCCCGCCCG CCTAC CGCGCGGGCA          TTCGTGCGGCGAGTC  56 25
JRI60_RS43115 10844927 .. 10844983 + -23.8  -5.00616   GATGCCATGCAGTTC GGGCCCGCCCGTTTCGCGCACCCCA CCAAACAC TGGGGC-CGCGGGACGGGCGGGTCC TTTTTTGCCCGAACC 100 230
JRI60_RS43120 10845294 .. 10845316 +  -6.3  -3.18681   CCGTCCGCGGACCCA          GGGGCAGGAT TGAG ATCC-GTCCC           TTGCTGGACTTCCGG  51 13
JRI60_RS43125 NONE
        kdsA NONE
JRI60_RS43135 NONE
JRI60_RS43140 10849174 .. 10849231 + -22.8   -2.6927   CGCCAGACGACGGAA GCGGCGAGGCG-TCTC-CACGGGGCCCG TTCC CAGGCTCCGTGTGAGGGCGCATCGCCGC TCGTGTATGCCGCGT 100 43
JRI60_RS43160 10851534 .. 10851547 +  -3.7  -2.71364   CCAGACCCGCGCGCT               CCAGC ATCA GCAGG                TCGTTGGCGCCGTCG  40 175
JRI60_RS43180 NONE
        nuoF NONE
JRI60_RS43190 10857466 .. 10857482 +  -2.1  -2.83164   CTCGCCCTCCCCAAG              TCCGGCC ATG GTCCCGA              TCTCGTACTACCTGA  40 80
        nuoK NONE
        nuoL 10860033 .. 10860056 +  -4.6  -3.67775   CGGCGCGGTCTACGC          GCTCA-TCCAG GTG CTGCAATGAGC          TTCTTCGATACCCAT  55 4
JRI60_RS43205 NONE
JRI60_RS43210 10863340 .. 10863363 +   -21  -4.54727   CACTGGATTCACCGA          CGCCCGGGCG ACTC CGCCCGGGCG           TTTTCGTTTCCGGGC 100 51
JRI60_RS43240 10873214 .. 10873242 + -15.3  -3.75153   ACCCCGCAACGACAA       CGGCCGC-CCCG AACATC CGGGAGCGGCCG        TTTCGCTTCCAGGCG  85 106
JRI60_RS43260 NONE
JRI60_RS43265 NONE
JRI60_RS43270 NONE
JRI60_RS43275 10881540 .. 10881569 +  -2.1  -3.01712   AACCGTAGGTCAGCG       TGGTCTTCGGA TCGACGCC TCCGAGCACCG        TGTTGCCCCGGACCA  41 350
JRI60_RS43295 NONE
JRI60_RS43300 NONE
JRI60_RS43305 NONE
JRI60_RS43350 NONE
JRI60_RS43355 NONE
JRI60_RS43370 10904508 .. 10904522 +  -7.8   -2.5474   TTCTCCTTGTACTTG               CGGAGC TGG GCTTCG               ATCTTGTCCATCGCC  48 424
JRI60_RS43395 10913548 .. 10913568 +  -7.5  -2.94747   ACGCGCCCGCCCGGC            CCGCTCCAT CAT GTAGAGCGG            TATCTCGTGCGGTGG  53 76
JRI60_RS43425 10919058 .. 10919073 +  -2.6  -4.56775   GCAGGGCATGTTACC              T-GACCT CTC AGGTCCA              TTTTTGAAACGAGCT  67 41
JRI60_RS43430 10920463 .. 10920476 +  -3.1  -3.14931   GCTGAAGCAGGTGCT               CGAGCA TGG TGC-CG               TTCCTGGGCCCTCCC  45 440
JRI60_RS43445 10922900 .. 10922922 +  -7.6  -3.06915   GAGGGTTCGACTCAA           GGCGGCGG GAATCGA CCGCCGCA           TTCCGTCCCGTGCCT  53 71
JRI60_RS43465 10929853 .. 10929863 +  -2.4  -4.05004   CGAGGCAGTTCTGGT                 CCGC GGC GCTG                 TTGTTCTTCTGCTGG  60 135
JRI60_RS43480 NONE
JRI60_RS43485 NONE
JRI60_RS43490 10934944 .. 10934967 +    -6  -3.14132   TCGGTCCGGGCGTGG          CGTTGGATCTG CAT CAG-TCCCACG          TTGCTGCGCACGAGC  49 234
JRI60_RS43505 10936798 .. 10936832 +  -8.4   -3.6215   GAAGCCCACCGCCGC     TCCCCGCACCAGGCTC GGC GAGCCGGCTGAGGGCA     TTTCCCCTCCCTTCG  62 93
JRI60_RS43510 10938546 .. 10938563 +  -3.3  -3.51032   TTTCAGGAAGTCGCG             CTCCATC TGCA GCTGGGG              TTATCCTTGGACACT  49 392
JRI60_RS43520 NONE
JRI60_RS43525 NONE
JRI60_RS43530 NONE
JRI60_RS43545 NONE
JRI60_RS43550 10948568 .. 10948596 + -14.6  -2.78547   GGGAGGAGAACAGTT       CCGCCTCC-CGGG CAAG CTCGCGGAGGCGG        TCCTTGATGCGCTGG  69 102
JRI60_RS43560 10949732 .. 10949751 +  -3.4   -3.0094   GCCGAAGCCACCGAG            CCAGGCCG ATCC CGGCATGC             TATCTCTCCCTGGAG  42 51
JRI60_RS43565 10950934 .. 10950946 +  -2.6  -3.14132   GACGGCCTGGTCCAC                GGTG CGTCC CGCC                TTCCTGGCGGCGGCG  44 182
JRI60_RS43575 NONE
JRI60_RS43580 10953726 .. 10953758 + -12.2  -3.17212   GGCGTGTTGAAGCGC     CGCAAGAGCTCAGCGA AGG TCGC-GAGCTCTT-CG     TTGCTCCAGTGCTGG  69 144
JRI60_RS43595 10956970 .. 10956989 +  -4.2  -4.07568   GGGCCGCCCGCGCCG            TGTCCTGG CGAT CCACGGCA             TTTTCGGCCAGCCGC  63 384
JRI60_RS43615 NONE
JRI60_RS43620 10969741 .. 10969754 +  -3.7  -3.74224   AGTGAATCGATCGAT               CCCAC ACAC GAGGG                TTTCCATGATTTCGC  54 36
JRI60_RS43625 10970494 .. 10970550 + -17.9  -3.29161   ACCCGGAAGGAGTCA CCGCGGATTCCGTGCCGCCGTGCCCG CCTCCA CGGGCACGGCGGCACACCG-CCCCGG TATTGTCATGCATTC  89 40
JRI60_RS43630 10971619 .. 10971675 + -10.7  -3.67517   CCGCCGGAGGGAGTA GCGCGGATTCCGCGCCGCCGTGCCCG CTTCCA CGAGCACGGCGGCA-GGACTCCCTAC TTTGCGGTCTTCATG  73 25
JRI60_RS43640 10975707 .. 10975721 +  -3.5  -3.78934   TAGCTCCCGGTGAAG              GCGCCG AGCA CGG-GC               TTCTTGTGCGAGAGG  56 215
JRI60_RS43655 10979803 .. 10979835 + -16.3  -3.14132   CCTGATTCGCTGGAA      GAGCCCAGCACTCCC GAG GAGATTGCTGGGCTC      TTCATGGCCGGGAGC  81 36
JRI60_RS43665 10981157 .. 10981210 +  -6.8  -2.57244   AAGCGCAAAGAGAGT GTGTTACCCACCGGCCTGCTGAACGA ACGT TCGTTCAGCAGGCCGATCA-T-GCGC TCCCTTCCTCGATCA  47 113
JRI60_RS43670 10981842 .. 10981856 +  -5.6  -2.73875   GAAGGCGCTGAGTGC               GCATCG GGG CGTTGC               TGCTCTTGCCGCCGC  45 30
JRI60_RS43675 NONE
JRI60_RS43680 10984388 .. 10984398 +  -2.4  -3.79251   AACACTGAGACCGCT                 GCGC GCG GAGC                 TTTGCTCCTGCACTG  54 298
JRI60_RS43685 10987076 .. 10987120 +   -12  -2.85565   CCGTGTCGAGGGGCG CGACGGCGGTGAAGTAGCGG ATGAG CCGCTGGCTCACGGCCGCCG TCATCTTTCCGCTCT  62 381
JRI60_RS43705 NONE
JRI60_RS43710 NONE
JRI60_RS43715 NONE
JRI60_RS43720 10997158 .. 10997185 +  -3.2  -3.01924   GGGTATCCTGCCCTA        CCCGGCCGCCTC CCGG GAGGGGGTCAAG         TCTTGACCCGGGATG  42 148
JRI60_RS43725 10998049 .. 10998059 +  -8.2  -3.15544   CGACGTACTCCCAGC                 CGCC CCC GGCG                 TTGGTGAACATCCAC  56 247
JRI60_RS43745 11003075 .. 11003097 +  -3.2   -3.2963   GGCGTCCGCATCCAT           GCTGGAGGTC TTC GCCCGCCAGA           TTCTCGGCACGTCCT  47 275
JRI60_RS43760 11006239 .. 11006250 +  -2.2  -3.57561   GGCCGCTCTCTCAAG                CACT ACGA GGTG                 TTTGACACCTTCCCG  48 55
JRI60_RS43780 11010212 .. 11010227 +  -4.6  -3.03159   GGCTCCTGCGTTCAT              TCCGCG TGAG CGAGGA               TGTTCACCAACTTGC  45 291
JRI60_RS43790 11013447 .. 11013465 +  -8.8  -3.65046   GGCCACGTCCTGGAG             GATGGCCG CGT TGGCCGTC             TTCTTGCCCTCCGAC  64 166
JRI60_RS43800 11016131 .. 11016143 +  -2.6  -3.08133   GTTCTTTGACACCCT                CTCG AGCGG CGGG                TTGCGTGGATGGATG  42 58
JRI60_RS43805 11017510 .. 11017541 + -15.8  -2.60392   GGGAGCCCCCGACGA      CGGGCGCGCGCC ATCACCCC GGCGCGCGGCCG       ATTCGTTACCGCCTC  74 48
JRI60_RS43825 NONE
JRI60_RS43830 11026800 .. 11026816 +  -7.9  -3.04144   ACTACGGCCGGTGGA              TCCGGGT GAA ACCCGGC              TGTTAGGGCTGCGCA  53 3
JRI60_RS43835 11029425 .. 11029449 +  -6.5  -2.71364   GAGGGAAGAGCCCGA         GA-GGGCCAA CAACCA TTGGCCCATC          TCCTTGGCGGAATAG  46 92
JRI60_RS43855 11032992 .. 11033023 +  -7.3  -3.14211   CGCTCCCACTCCATG     CGCGAGCCGCT-GGG CTCG CCCGAGCGGAT-GCG      TTCGTGCAGGCGCCT  52 281
JRI60_RS43865 11034974 .. 11034994 +  -3.2  -3.66378   GATCTGAGTGCGCTG           GCAGC-CCG CGTC CGGCGCTGA            TTTCAGTGGAATGTA  53 5
JRI60_RS43870 11035718 .. 11035738 +  -5.3  -3.45768   GCCGAGGTCCACCAC            CTGCGCGTC ATG GGTGCGCAC            TTGATTGATCTTCCG  53 188
JRI60_RS43875 NONE
JRI60_RS43900 11041079 .. 11041090 +  -5.8  -3.23393   CTTCCTCGTACCCCA                GCCT GGCC AGGC                 TCTTCTGGAGTCGGC  49 473
JRI60_RS43930 11047895 .. 11047906 +  -2.2  -4.17048   CGTCCGAGCGGGATG                CCTT GGGA GAGG                 TTCTTTTCCAACGCG  64 521
JRI60_RS43940 11049171 .. 11049185 +  -3.4  -3.48276   CACAGCGAAGTGGTA               GCATCG CGT CGGCGC               TTGTGTCGGGCGGGC  48 95
JRI60_RS43945 NONE
JRI60_RS43950 11049597 .. 11049611 +  -3.4  -3.53444   TCCACACCCCACAGG               GTCGCG GTG CCCGGC               TTTCGCGGGGCGTCA  49 37
JRI60_RS43955 11052502 .. 11052520 +  -7.3   -3.4252   GCGGGTGAGCATCTC             CGGCGCG ATCCC CACGCCG             TTGTCGTGGATGGAG  56 503
JRI60_RS43965 11054996 .. 11055008 +  -3.4  -3.14344   GCGCACCAGGTGGAA                CATC GCGAG GATG                TTGGTGCGGAAGGTC  45 521
JRI60_RS43980 11057702 .. 11057730 +  -5.2  -3.05384   GTCTCGCACCACTCC       GCCTCGCACCAGC ATGT GCTGGCGC-AGGA        TTCCCTCGAAGCGCG  47 126
        astB 11064667 .. 11064679 +  -3.3  -3.53012   CATGGCCAGCGGGCC                GGGGA CAG TCCAC                TTTCGACACAGAAGG  49 89
JRI60_RS44020 NONE
JRI60_RS44025 NONE
JRI60_RS44030 11067238 .. 11067252 +  -2.7  -2.57132   GCGGGCCACCCATGC               CTCGC CTTCC GCGCG               CTTCTCGGCGGGCAA  38 209
JRI60_RS44045 11071304 .. 11071332 +  -2.9  -3.79906   CGTCCAGCGAGCCGA        AGTGCTTGAGCGC CTT GTGCACCAGCGCC        TTCTTCTGCCGCTCG  55 470
JRI60_RS44060 11074129 .. 11074154 +  -4.7  -2.72344   CCCCCTCGGGCGGGT         GATGGTCGAGTT CGA AGCGCG-CCATC         TCCTTGGGCATGCCC  42 389
JRI60_RS44080 NONE
JRI60_RS44085 NONE
JRI60_RS44090 11080128 .. 11080157 + -25.1  -5.40072   CCCCCGCCTTGCCCC       CCGGGGCCGCTTC CCTC GAAGCGGCCCCGG        TTTTTTTCCGGCACG 100 66
JRI60_RS44095 11081623 .. 11081659 + -21.6  -2.53263   AAACACGACTGAGCC    CGCTGGGGGCCGTGGC CTCAC GCCACGGTCCCCGGTG    TGCATTGCGGGTAGA 100 51
JRI60_RS44100 11082441 .. 11082454 +  -3.1  -2.75074   CCTCTCCCCGTTCCC               CTGAT TCCT GTCAG                TCATCTTCCAGTCAC  40 68
JRI60_RS44105 11084807 .. 11084838 + -14.5  -2.78384   ACGCCTTGAGCACGG      CGCCCGTGCTC AGGGAATGGC GAGCACGGGCG       TGTCGTCCAACACCA  72 32
JRI60_RS44120 11089638 .. 11089668 + -13.3  -3.17075   CACGCCCTGGATGGT       GACGAGCGTCTTG CCGCC CTGGACGCTCGTC       TTGAGTTGCACACGG  67 151
JRI60_RS44145 NONE
JRI60_RS44150 NONE
JRI60_RS44155 11098328 .. 11098338 +  -2.4  -3.36273   CCTCCCCCTCAGCGC                 CGGG AGG CCAG                 TTCCTGTTCGACCAG  46 45
JRI60_RS44185 NONE
JRI60_RS44190 NONE
JRI60_RS44195 11108846 .. 11108878 +  -3.4  -3.40597   CATACTGTGCATGTC      CCCTCTCCCT CTGGGAGAGGGCT AGGGTGAGGG      TATTTCCATCCCGCG  48 65
JRI60_RS44200 11111013 .. 11111031 +  -2.3  -3.29144   CGAGAACAGGCGCTT            GCC-CAGG CCCA CCAGCGGC             TTCTCCAGCACGTAG  45 111
JRI60_RS44210 11113734 .. 11113762 +  -6.5  -2.80816   TTCCAGTTCTAGCAA        CGCGCCCGAGTCC GGC GCGCTGGGGCGGG        TGTGGTGGGTGGCGC  48 29
JRI60_RS44215 NONE
JRI60_RS44220 NONE
         mfd 11118882 .. 11118896 +  -2.1  -2.61274   GGCACCTGCGCTCTG              CCG-CA GGCG TGACGG               GTTGCTTCACCTCGA  38 14
JRI60_RS44230 11119097 .. 11119130 +  -8.7  -2.78384   GTGGACTGCCGCTGA     GCGGGCGGCCAGCGCT TGA GGCGCAT-CTGCCCGC     TGTAGTAGGGCGAAA  52 26
JRI60_RS44235 11120209 .. 11120236 + -10.6  -3.05844   GCATCCGTCGGCACG        TCATCCGTGTGG CCCT CTACCCGGATGA         TCTTCCCCTGCACCC  60 281
JRI60_RS44260 NONE
JRI60_RS44265 NONE
JRI60_RS44270 NONE
JRI60_RS44275 NONE
JRI60_RS44280 11129883 .. 11129902 +  -9.2  -2.70932   CCCGGAACTCGTTCA            GCCGCTCG CGCA CCAGCGGC             TCCTTCACCCGGGCA  51 376
JRI60_RS44290 11130660 .. 11130681 +  -5.8  -3.14132   GATGATTCCCACCAT           CGCGCTCA CCAACA TCAGCGCG            TTCGTCACCACGAAC  49 188
JRI60_RS44300 11131962 .. 11131986 +  -3.4  -3.80014   AAGGTTTCAACTGAA         CCGCACGCCGC TCCA GCGGAG-GAGG          TTTCCTCCTGGCTGT  56 517
JRI60_RS44310 11133700 .. 11133727 +   -17  -4.18042   GTTGACCACCTGCGC        GGGCCGGGTTCC TACG GGGACTCGGCCC         TTTGCTTTCTGTGGG 100 58
JRI60_RS44320 11135010 .. 11135031 +  -7.9  -3.53224   TTATTCAAGCCGTCG           TGCCTTGGC TTGA GCCGTGGCA            TTTGAAAACCCGCTG  60 152
JRI60_RS44360 11146897 .. 11146913 +  -2.1  -3.39449   CCGGATGCGTCGCCG              CCAGCGG CCC CAGCTCG              TTCATCTTCGTCCGC  45 485
JRI60_RS44390 NONE
JRI60_RS44395 11155556 .. 11155566 +  -2.4  -2.78384   GACGCTGTACGCCGG                 AGGC AGT GCCA                 TCTCATGAGCAAACC  38 7
JRI60_RS44400 11156435 .. 11156454 +  -3.4  -3.27774   GCGGACCGCAAGGAG            GCGCGATG AAGC CCTCCCGC             TTCGTGGTTCCGCTC  46 17
JRI60_RS44405 NONE
JRI60_RS44410 NONE
JRI60_RS44415 11159358 .. 11159398 + -11.8  -3.01041   TAAAGGAGCACAACC GGACAGGGCGGGGCATCAC TCAA GCGATGCCCCGCGCA-TCC  TCTCTGGTTAGCGTT  65 66
JRI60_RS44420 NONE
JRI60_RS44425 NONE
JRI60_RS44430 NONE
JRI60_RS44435 NONE
JRI60_RS44440 11163637 .. 11163659 +  -3.5  -3.53012   TTGAAAGGTGTGCGT           TTGAGAAGT GCTCA ACTTTTCGA           TTTGAACCAGAGGCC  50 312
JRI60_RS44455 11170097 .. 11170129 +  -3.4  -3.35597   AGACCCGTGGATGTC      CCCTCTCCCT CTGGGAGAGGGCT AGGGTGAGGG      TATTTCCCCGATCCG  48 81
JRI60_RS44460 NONE
JRI60_RS44465 11172763 .. 11172773 +  -8.2  -2.73364   CCAGCGCATAGGCCG                 GCCG CAA CGGC                 TCGTTCAGGTCCAGG  51 490
JRI60_RS44485 11176356 .. 11176378 + -15.6  -2.72344   GATACCCTCACCCCG           TCCCTCTCCC AGA GGGAGAGGGG           TGGTTGGGGCTACAG  75 52
JRI60_RS44505 NONE
JRI60_RS44510 11184152 .. 11184173 +  -4.3  -3.38768   GCTCGGCTCTTCGCA           GGTGGGATG GCAA TAGCCCGCC            TTGTGAGTCATCTCG  49 203
JRI60_RS44520 11185356 .. 11185389 +  -9.6  -3.21747   CCGGGGCTCCTGCGC    GGCC-TGC-CAGCGCG TCAG CGCGTTGAGCGCGGCC     TTGCTCATGGCGTAC  59 276
JRI60_RS44540 11188374 .. 11188385 +  -5.8  -3.50853   GTGCTGCCGGTGCAG                CTGC CACC GCAG                 TTGTCCTTGCAGACG  53 195
JRI60_RS44550 11193182 .. 11193201 +  -7.8  -2.70932   CCATGTCCTGATCCA            CCACCTGG AGGT CCAGGTCG             TACTTCGGCACGCGC  49 412
JRI60_RS44580 11201292 .. 11201303 +  -3.6  -3.53012   ACGAGGAATGCCTGT                CGGG GCCT TCCG                 TTTGAGGCCCCACGA  51 96
JRI60_RS44585 NONE
JRI60_RS44590 11204572 .. 11204590 +  -4.4  -3.91084   CCGGTGCCGACGAAC             TCCGCGCG CAG CTCGCCGA             TTTGATTCCGGGTCA  61 273
JRI60_RS44610 11210232 .. 11210253 +  -3.5  -2.92192   CGTGACACAAGGATG           GGCATGGGC AGGC GCCCGGGAC            TGTGATTCGGTCGCG  43 106
JRI60_RS44615 11212044 .. 11212060 +  -7.3  -2.99471   AGCGCGTTACCTCTC              GGTTTGT AAC GCAAACC              TGTCTGTCCCACTGA  51 188
JRI60_RS44620 NONE
JRI60_RS44625 NONE
        ccmA NONE
JRI60_RS44635 NONE
         zwf NONE
         pgl NONE
        gndA 11220192 .. 11220205 +  -2.3  -2.70932   AGGCGGGCTTCGTGC               ACTCC GACT GGAGC                TGATTCGCGCGGAGG  38 9
JRI60_RS44660 11221143 .. 11221163 + -15.5  -3.14132   CGAGCTCGGGAGCAA            CTGGTCCGA TGA TCGGACCAG            TTCGTCCGGCGCGCC  78 493
JRI60_RS44665 NONE
JRI60_RS44670 NONE
JRI60_RS44680 11226242 .. 11226295 + -15.2  -3.03554   CCAAAGGGCCCATTG CGCGTTCCCCTGCCCGTGTACTCC CTTGTC GGAGTCCACAGGCGAGGGAGCCCG TATGTCATTCATTAC  74 73
JRI60_RS44685 11228624 .. 11228634 +  -2.4  -4.02817   TCTCCGCGCAGAGGG                 CGCC CTT GGCC                 TTCTTGTTCTGGCAG  60 160
JRI60_RS44700 NONE
JRI60_RS44705 11233827 .. 11233863 +    -5  -3.02144   CCAGGACCCAGTCGC    TCGCGGACCTCCGC GACGGCCCG GCGAAGGGCCGAGA    TGTTGAAGACCATCG  45 196
JRI60_RS44715 11236461 .. 11236471 +  -2.4  -3.32966   GGAGCGGGGGACCCC                 CCGC ACA GCGC                 TCTTGTCTGGAATGT  44 61
JRI60_RS44720 11237883 .. 11237901 +    -8  -3.28712   TGCGACTTCCGGTGC             GGGAGGGC TCT GTCCGCCC             TTGTGGAAGACCCGA  56 79
JRI60_RS44725 11239138 .. 11239151 +  -9.5  -3.30771   GGTCCGAGATCTTCA               GCGCG CCCT CGCGC                TTGTAGGGCATGTGG  61 500
JRI60_RS44745 NONE
        fghA 11244702 .. 11244716 +  -3.5  -3.91897   GAGCACGCCGGGAAG               TGGGA AGGGC TCCCG               TTTGTCCGTGGGAGC  59 154
JRI60_RS44755 11245854 .. 11245900 +   -23  -3.21912   CCCCCACGGTCCGCC GAGGGGCTCTCCCCTCCCGC CATTGAA GCTGGCGGGGGGAGCCCCTC TTCGTCCCTTCCGGC 100 62
JRI60_RS44775 11249959 .. 11249972 +  -3.7  -3.38768   CGCCCGAGGTCCAAT               CGGCG TAGC CGACG                TTCTCCATGATGTCG  47 458
JRI60_RS44795 NONE
JRI60_RS44810 11263370 .. 11263381 +  -2.2  -3.94891   CGATTAGGCGGCTCT                GACG GGGG TGTC                 CTTTTTTTCATCTCT  56 200
JRI60_RS44815 11264942 .. 11264964 +  -2.7  -3.29471   CCGGGTCCTTCCCCT          TGTAGTGCAC GTAC GTGCGC-ACG           TTGGTCTCGTGGAAG  45 492
JRI60_RS44825 NONE
JRI60_RS44830 11267531 .. 11267541 +  -8.2  -3.06492   GTCCCACTCGGGCAC                 CGCG GTG CGCG                 TGTTGAGCTCGATGG  54 147
JRI60_RS44840 11269566 .. 11269587 +  -2.9  -3.17075   CCCCACACCCATGAA           GGGGATG AAGCTCAC CTTCCCC            TTGACTTCGCCACCG  44 469
JRI60_RS44860 NONE
JRI60_RS44865 NONE
JRI60_RS44930 NONE
JRI60_RS44935 11288497 .. 11288517 +  -7.5  -3.65224   CTGCGCTCGCTCGTG            GGGTGAGGC GCG GCTTCACGC            TTCTTCACATACGAT  63 20
JRI60_RS44940 NONE
JRI60_RS44945 11290562 .. 11290580 +  -5.3  -3.31144   CCAGCGTTACGGCTT            CTCGGTCG GGCT CGAC-GAG             TTCTGCGGATCGCGG  51 165
JRI60_RS44955 11296434 .. 11296461 + -12.8  -3.01712   GCGGCGCGCTCGGGG        TTGCCCAGCTGCC GGT GGCA-CTGGGCGA        TGTTGAAGAGGAAGC  66 460
JRI60_RS44985 NONE
JRI60_RS44990 NONE
JRI60_RS44995 11305742 .. 11305791 +  -8.5  -3.16191   TGATGCGCTCGATGT CCTCGGCGACGCCGGGAGCGCGG CCCTCA CCGGGCTTGCGG-G-CGCGGAGG TTCATCGACATGTGG  56 282
JRI60_RS45010 NONE
JRI60_RS45015 11308109 .. 11308132 + -10.2  -2.70932   AGGGAGGGAAGAGAA          GCTCAGCGCT GATT GGCGCGGAGC           TCCTTCACCAACCGG  57 84
JRI60_RS45025 11311453 .. 11311483 +  -6.1  -3.03243   GAGACATGAGATACA      CA-GCGGACCCCAG CCCT CTGGAGTCCCCATG       TCTTCCCACCTCCGT  49 32
JRI60_RS45030 11312214 .. 11312232 + -13.2  -3.53444   TCCGGCTCGCGCTCA             GGTACTGG CCG CCAGTACC             TTTCCGACCCACTCG  77 42
         dps NONE
JRI60_RS45050 NONE
JRI60_RS45055 11316959 .. 11316969 +  -4.6  -3.19602   GTATCGGGAGGACCC                 GGGT TCA GCCC                 TCTTCCTCTGGGAGA  47 151
JRI60_RS45060 NONE
JRI60_RS45065 NONE
JRI60_RS45070 11319105 .. 11319123 +  -6.6  -3.76167   CTGAAGTGAGGACCC             GGGGACGG GGA CGGTTCCC             TATTTTGCCTTCTCG  62 32
JRI60_RS45080 11321145 .. 11321168 +  -5.2  -2.64616   GCAGGTGGACGGTGA          CGTCCGTGCT CCCC AGCAGGGAGG           TGCTGTAGGTACCGA  43 175
JRI60_RS45100 11325063 .. 11325075 +  -5.5  -3.28712   CCCTTCGGGACACGG                TTGCC GCT GGCAG                TTCTCGCCACGAACG  51 276
JRI60_RS45110 11329272 .. 11329309 +  -9.2  -3.35679   GGTCCAGGACTCCTT   CCTCATCTGAGCACCGC TAGTC GCGGT-CGTAGATGGGG   TTCTCCGTCAGCCAG  63 16
JRI60_RS45120 NONE
JRI60_RS45125 NONE
JRI60_RS45130 NONE
JRI60_RS45135 NONE
JRI60_RS45140 NONE
JRI60_RS45145 11336587 .. 11336602 +  -5.4  -2.72991   CTGGATGACCACGCC              GC-CCTC GGT GAGGCGC              TGCTTCACGATGTCG  44 407
JRI60_RS45165 11342241 .. 11342298 +  -9.1  -2.94099   TCAGGGACGAGCAGC CGTCCAGGATGGATCGCCTGCCTGCC CTGGATT GGCGCG-GGGCGAGCCATCGTGGACC TGTATACTCCCGGCC  56 88
JRI60_RS45170 11343996 .. 11344015 +  -4.2   -2.5474   CGGCCGGACCCTTCA            CGGCGAGCT CCA GGC-CGCTG            CTCTTCTCGCTCGCG  41 388
JRI60_RS45190 NONE
JRI60_RS45195 11352012 .. 11352051 + -11.4  -2.57795   ATCGGAGCTGAAAAA  TGC-CGCTCCGGTGGCAGG CCT CATGTCACCGGAGGGTGCG  TCGGTTGCTGGTGCA  61 52
JRI60_RS45200 11353867 .. 11353888 +  -2.9  -4.85782   GTTCCCCGGGTGGTG           AGGCGCCAGT AGC AC-GGTGCCC           TTTCTTTTTAAGAGA  77 14
JRI60_RS45205 11355280 .. 11355311 +    -5   -3.7941   GGTTGGTGTTCCACC      CGAAGTCGGCGGGCA CCT TGCC-GCCGCCCTGG      TTCTTGTAGCCAATC  58 174
JRI60_RS45220 11356320 .. 11356345 +  -2.5  -2.70932   CATGCCAGCCTGGAG         GACAG-TCACCT CGA AGGTGAGCCGGC         TGATTCCGGGCAGAG  39 179
JRI60_RS45235 NONE
JRI60_RS45240 11360506 .. 11360540 +  -4.2  -3.05384   CGGGGCAGCAGCGAG    CGGTCCGCGC-GC AACCGCGCCA GCAGCTCGGGCCG     TTCCATCAGCACCAG  45 429
JRI60_RS45255 11362650 .. 11362670 +  -5.3  -3.21099   ACCGACACCAACGTG            GGCGGCC TGCCTAT GACCGCC            TTCCTGCTCACAGCC  49 152
JRI60_RS45260 NONE
JRI60_RS45265 NONE
JRI60_RS45270 11368652 .. 11368670 +  -2.2  -3.41602   TGGAACACCAATGGG             TTGGCGCC GTC GGAGCCGC             TTGTCGTCGAATCGG  46 254
JRI60_RS45280 11370970 .. 11371001 +  -2.2  -3.64703   CTATCCGTGGAAGAG      GCCTCGCGTG TGCTGGCTGATT TTCGCGAGGC       TTTCGCTCAGCAGGC  51 367
JRI60_RS45285 NONE
JRI60_RS45290 NONE
JRI60_RS45295 NONE
JRI60_RS45300 NONE
JRI60_RS45310 NONE
JRI60_RS45315 11377778 .. 11377790 +  -3.3  -3.69327   CTGGCCTCCGGCGTA                CGGTG ACC CGCTG                ATTTTTTGATCACTC  53 86
JRI60_RS45320 11379437 .. 11379455 +    -8  -3.14344   CTCGCCCAGATAGCT             GGCGCGTC CCA GGCGCGGC             TTCATCCGCGCGGTG  54 138
JRI60_RS45330 NONE
JRI60_RS45335 NONE
JRI60_RS45340 11388389 .. 11388410 +  -7.9  -2.62184   CCACACGGGCCACGT           GGCGGCG-CG CAG CGACTCCGCC           TGATCTCGCCCCAGC  48 496
JRI60_RS45355 NONE
JRI60_RS45360 11392684 .. 11392711 +  -7.6  -2.71364   CATCGCCGCGTAGTC        CTCGGTGCGCGGC GAG GCGGCG-ACCGCG        TCCTTGGCCAGGTCC  49 364
JRI60_RS45370 11394991 .. 11395001 +  -2.4  -3.01712   AATCCAGTCTCCAAG                 AGGG GGG CCCA                 TATTCCAAGAGGGAG  41 133
JRI60_RS45375 11395395 .. 11395407 +  -2.6  -3.53012   CTCCAGACGCATGTA                GGTC CCCCT GGCC                TTTCCGGCAACGCGA  48 152
JRI60_RS45380 NONE
JRI60_RS45385 11397455 .. 11397511 +  -2.2  -3.54543   ACATGTGGGGACTCA TGAGCGTGGA-CGTC-CCCTCTCCCTCT GGG AGAGGGTCAGGGTGAGGGTCTACGGGCG TTTCGGACGGTGAGT  48 42
JRI60_RS45390 NONE
JRI60_RS45395 11399526 .. 11399538 +  -4.8  -2.64155   ATCGGGAGGGATTGA                CCTG GCGGA CAGG                TGCCTTTCCGCCGCC  42 91
JRI60_RS45400 11399963 .. 11399975 +  -4.7  -3.09327   CACGTGCCAGAACAC                CGGGC GCT GCCCA                TCTTCCGTCCCGTGC  47 111
JRI60_RS45405 11401154 .. 11401170 +  -3.6   -2.7634   ACACACCCATCCCGA              CGGAGG ACGCA CGTCCG              GTTTCGACTCCCGTT  41 386
JRI60_RS45435 NONE
JRI60_RS45440 NONE
JRI60_RS45455 NONE
JRI60_RS45460 11413463 .. 11413473 +  -4.6  -4.38927   GGGACATACACGGGG                 GCTC GGT GGGC                 TTTCTTCTGTGCGCC  69 60
JRI60_RS45465 NONE
JRI60_RS45470 11415573 .. 11415584 +  -7.2  -3.14132   ATCACGTACCAGGTG                CCCG CGGC CGGG                 TTGGTGAAGGGGCAG  54 486
JRI60_RS45480 11419116 .. 11419131 +    -4  -3.65046   CTCGTTGCTCGACGT              GGT-GTC GTA GACCACC              TTCTTCACCTCGAGG  55 402
JRI60_RS45505 NONE
JRI60_RS45510 NONE
JRI60_RS45515 11428442 .. 11428462 +  -6.7  -2.70932   ACGGGAGCCGCTGGC            GCGGCATGG GCG CGAAGCCGC            TCGTTCCCGCCGGAA  46 266
        nhaR 11432744 .. 11432757 +  -3.7  -3.53444   GCTCCTGGGGTTGCC               ACCCG CCCT CGGGC                TTTCCCCCCGCGTCC  50 303
JRI60_RS45555 11436217 .. 11436261 + -11.4  -3.01791   CACGAGGACGGATAC CCTC-ACCCC-GTCCCTCTCCC AGA GGGAGAGGGGTTGGGGCCGCGG TGTTGGGGCCGCGGT  65 223
JRI60_RS45560 NONE
JRI60_RS45565 11438413 .. 11438427 +  -2.7  -3.10164   AGTGCCGGACGCCCC               GGTGC GCTCA GCTCC               TTCGCTCCTCCGTGG  44 40
JRI60_RS45575 NONE
JRI60_RS45580 11442367 .. 11442393 +  -3.7  -3.60098   GAAGACCCTCACCCC        AGC--CCTCTCCC AGA GGGAGAGGGAGCA        TTTACGGTGAGGAAT  51 184
JRI60_RS45635 11455285 .. 11455317 +  -7.6  -3.62046   TCCCCCCCTCACGCC     GGCAG-GCGCCAGTC GATG GGCTCGCGCCCCGCC      TTCTTCAGCGCCTCG  60 45
JRI60_RS45645 11456991 .. 11457005 +  -2.7  -3.54424   TGAGGCCGTGACACA               GGCGG AACAC CCGCG               TTTCCCCCCGTCCGC  49 30
        tadA 11458904 .. 11458914 +  -6.8  -2.70932   GCACCCGGCGTCACT                 GACG GTA CGTC                 TCCTTGCGGCAAGCG  48 68
JRI60_RS45655 NONE
JRI60_RS45660 11461498 .. 11461541 + -17.5  -4.39696   ATGCTCAGTCCCCAA CCCGGTGCTTCGGCGTCCTC CATGT GAGGGCACC-AGGCACCGGG TTTCTTCATTTCAGA 100 49
JRI60_RS45665 11463206 .. 11463249 +  -7.3  -4.02132   CATGCTCGGTTCCCA CCCGGTGCTTCGGTGTCCTC CATGT GAGAACGCCCT-GCGCCGGG TTTCTCCATTTCAAG  66 48
JRI60_RS45670 11464927 .. 11464950 +  -8.8  -2.71731   CGCTTGTGGGAATCC          GCCCCCGGTCT GCT AG-CCTGGGGC          TCCTTCCCCGATGGC  52 79
JRI60_RS45675 11466796 .. 11466812 +  -6.5  -3.28712   GGGCGTTGGACGCCC              GCTCCTC GGT GACGAGC              TTGTAGGCCGCCAGG  53 106
JRI60_RS45685 11468434 .. 11468445 +  -5.8  -3.29144   CAGCCGAACGTCCGC                TCCG CCAC CGGA                 TTCTCCGCACCGTCA  51 188
JRI60_RS45700 NONE
JRI60_RS45705 NONE
JRI60_RS45730 11482484 .. 11482521 +  -3.3  -2.52676   CATGACGGCAGTCAC   CGGAAAGAGGCG-CCCGG TAG TTGGATCGCCTCTTGCAG   TGGGTTGGGGACGTC  39 36
JRI60_RS45735 11483787 .. 11483801 +  -8.5  -3.68351   GATGACAGCCGTCAC               CCGGG TCCCC CCCGG               TTTCGATGGTGACAG  65 70
JRI60_RS45740 11485811 .. 11485837 +  -2.9  -2.81133   TGAACTGAACGGGTG        CCGATGACCCGA AAAA TCGGG-CACCGC         TCTCCTGGGTGGGTG  41 33
JRI60_RS45745 11487363 .. 11487387 + -14.3  -3.34398   GAGTGGCGGCACGAG          GGCCCGGTG GCGGTTG CACCGGGCC          TGTTTCACCCCGGCG  75 39
JRI60_RS45750 11488523 .. 11488543 + -14.1  -3.14132   CGCGCGCCGCGCGAA            CTGGTCTGA CTG TCAGACCAG            TTGGTGAAAAACGCG  73 47
JRI60_RS45780 11496402 .. 11496419 + -11.3   -2.5547   CGTCGCCGCCTGATA             GCGGACA CGGT TGTCCGC              CTTCCTGTCAGCGCT  59 28
JRI60_RS45785 11497795 .. 11497823 +  -5.2  -3.12668   AGCACGAGTCCCTGG       CGCG-CGAGCGCG AGCA CGCGCTGGATGTG        TTGGATGTAGCGATC  47 324
JRI60_RS45795 NONE
JRI60_RS45800 NONE
JRI60_RS45805 11500273 .. 11500298 +  -5.3  -3.30124   CGGCGGAGAGCCAGG         GGCCCTCGACG AGCT CATTGAAGGCC          TTCTGAGAGGTGCGC  51 348
JRI60_RS45820 11505911 .. 11505925 +  -2.7  -3.56862   CGACAGCAATGGAGG               GCCGC CATGA GCGGA               TTTGGAGCGCTTTGT  49 366
JRI60_RS45825 NONE
JRI60_RS45830 NONE
JRI60_RS45835 NONE
JRI60_RS45840 11512780 .. 11512807 +    -4  -3.29144   CGAGAGCACGAGCGA        GC-GCGTGTTCGG ATA CTGGTCGCGCAGC        TTCTCCACCAGCTCC  49 507
JRI60_RS45855 11515384 .. 11515412 + -17.5  -3.68222   CACTTCGTACCAGGA        GGGCATCACCCGG GTG CTGGGTGATGTCC        TTCTTGAGATTCCGC  90 344
JRI60_RS45880 NONE
JRI60_RS45885 NONE
JRI60_RS45890 11523887 .. 11523901 +  -5.6  -2.93723   TCCACACTGCGCCGT               TGCCAC CCC GAGGCA               TGTGATTCATGAGGG  46 6
JRI60_RS45895 NONE
JRI60_RS45900 11526934 .. 11526950 +  -7.9  -2.87211   GGTATTCTTGGGCCC              CGCAGCC ATT GGCTGCC              TCTGTCGAAAACCAT  52 263
JRI60_RS45905 11527552 .. 11527570 +  -4.5   -3.2614   GAGAAAACGAGCGGC             GTTGCGC GCGAA GTGCAGC             TTCATGTCGCGCGTG  47 176
JRI60_RS45925 11532967 .. 11532989 +  -5.5  -2.79183   GCTGTGGGGGTGAAG          GGGTGGCCCG CCCC CGGG-TGCCC           TGTGGTAGACATCGG  45 28
JRI60_RS45930 11533607 .. 11533649 + -12.6  -4.17048   GGGTATCCGCCCCCG ACGCGCCCGCCTGGAGGCC CCCCGA GGCC-CTGGACGGGCGCGC TTCTTTTCCCGGGCC  91 79
JRI60_RS45935 11536585 .. 11536623 + -18.9  -4.07885   GCCCCCTCGGGACAC  ACG-AGCGGCGGGGAGCC TCCG GGCTTCCCGCCGCTTCGC   TTTTGGGGAGGCCTC 100 64
JRI60_RS45945 NONE
JRI60_RS45950 11538425 .. 11538463 + -18.2  -4.30576   GTACCCCGGATGAAT   CCTGGAGCCCGACCTTCT TCG AGAAGGTCGGGCTCTTGC   TTTTGGTGGTGAGGG 100 44
JRI60_RS45955 NONE
         rnz 11548285 .. 11548307 +  -5.4  -3.50853   TCTCATAGGCGCCCG           GGGCCTCGCG CAG CGGCAGGTCC           TTCTCCTTCAAGAAG  53 356
JRI60_RS46000 11549766 .. 11549790 +  -5.8  -3.06696   ACCTGACGTCTTGCT         CGAAGAGAGGAG GTC CTCC-CTCT-CG         TGTCTTCAGCAAAGC  47 466
JRI60_RS46020 11553505 .. 11553529 +  -3.4  -3.72576   CCTCGGCCCGTCGGT          TCGCGAGCGT GTCAG AGGCACGCGG          TTTGCTGAAAGGCAC  53 76
JRI60_RS46025 NONE
JRI60_RS46040 NONE
JRI60_RS46045 11559647 .. 11559663 +    -5  -3.02829   GTGCAACGCCCACCG              ACCCCG TCACC CGGGGC              TCTTCGAAGGGTGTG  45 77
JRI60_RS46050 11561453 .. 11561463 +  -8.2   -3.8211   ACTTGTCCTTGCCAC                 GCCC CTT GGGC                 TTCTTGTCGGTGCCG  68 109
JRI60_RS46060 11565022 .. 11565042 +  -5.3  -3.38768   CCCATGTCCGTGGCG            GTGTGGCGG CCG CCGTTGCGC            TTGTCGATGATCTCC  51 319
JRI60_RS46075 NONE
JRI60_RS46080 NONE
JRI60_RS46085 NONE
JRI60_RS46090 NONE
JRI60_RS46095 11570518 .. 11570534 +  -4.4  -2.50994   GCCCCCCACCCCGTA             GGCGTCC ACTA GGA-GCC              CTTCATGCCCTTCCC  42 25
JRI60_RS46100 NONE
JRI60_RS46105 NONE
JRI60_RS46110 NONE
JRI60_RS46115 NONE
JRI60_RS46120 11574359 .. 11574383 +  -3.5  -3.29144   CTCGATGTTGCCCTG         GGTG-GCCAG CGAGTA CGGGCACACC          TTGTGCGCCGCGTGC  47 112
JRI60_RS46145 11578784 .. 11578803 +  -2.1  -2.91264   TTCCGAGACGCTGCC            CGGAG GTACTCACGG CTCCG             TGTCTCCATCGCCAA  40 82
JRI60_RS46150 11580836 .. 11580859 +  -9.5  -2.62616   TGCTACCGGGCTCCC          CCGTGCCGG AGATGG CCGGCGTGG           TGGTCTCCACGGTCG  53 436
JRI60_RS46165 11588863 .. 11588896 + -13.1  -2.75064   CGAGTTACGCATGCA     CCCTCTCCCCCTG GGAGAGGG CGGGGGGTGAGGG      TAATTCAGTCCCCGG  67 42
JRI60_RS46180 11592773 .. 11592793 +  -5.3  -2.57132   TGGCGCGAGCTCGAG            CTGGTCCAC CGC GCGCACCAG            GTTCTCCAGACCCCG  43 120
JRI60_RS46190 11595199 .. 11595209 +  -2.4  -2.94695   GACGGACTCGGAGAA                 GGCG CAC CTCC                 TGTCCTTGCTCCTCA  41 476
JRI60_RS46200 11596601 .. 11596616 +  -7.5  -3.43492   GCGAGTTGGGTAGGC              CGCCG AGCAGC CGGCG               TTCTCCTCGATGTGG  59 213
JRI60_RS46215 NONE
JRI60_RS46225 11601860 .. 11601887 +  -4.1  -2.73681   CAGCAGGTACATGAT        GGAGCGG-TGCG TCTGC CGCAGCTCCTCC        TGCTTCGAGTCGGTC  42 371
JRI60_RS46280 NONE
JRI60_RS46285 11616270 .. 11616280 +  -2.4  -3.28712   CCAGGCGGGCGCCAC                 CCTC GGC GCGG                 TTCTCCGCCACCAGG  45 366
JRI60_RS46300 NONE
JRI60_RS46305 NONE
JRI60_RS46310 NONE
JRI60_RS46315 11622679 .. 11622691 +  -3.4  -3.33492   CGGAATGCCCGCGGC                CATC TTCGC GATG                TTCTCGCGTGAGTGG  47 379
JRI60_RS46325 11624625 .. 11624645 + -10.3  -2.80988   CGGGGGGGTTGGAGT            CGCGTCGGG TGG CGCGGCGCG            TGGTTGCTCGTGTGC  59 183
JRI60_RS46330 11625685 .. 11625726 +  -6.5  -3.65046   CAGAAGAGACCCCGG CGGCGCTGCACGCGCAGG AAGGTGC CCTGGACGTGCGG-GTCG TTCTTCGGGTGCCCG  59 285
JRI60_RS46350 NONE
JRI60_RS46355 11631107 .. 11631121 +  -5.7  -3.05596   AGCCTCGGACATGGC               GTCTC AGATC GAGAC               TTGCGTGGCCGGATG  47 108
JRI60_RS46360 11632937 .. 11632984 +  -2.5  -3.28712   CCCAGCGCTGTCACG TCCCGCGCCG-CC-TCGGCCAGC CACA GCGGGCCCACGGGCTCCGCCGGA TTGTCCGGGCGCCGC  45 525
JRI60_RS46370 11634404 .. 11634443 +  -4.8  -3.78934   GGCCTCCTCGGGGGC  CTGGGCG-TGCTTGCGCAG CGC CAGCCCGAGCATCGCCACG  TTGTTGTCGAAGCCC  58 512
JRI60_RS46385 11638534 .. 11638550 +  -3.6  -3.28712   CCCCCGGCCCCGAGC              GCAGCT CCGCC AGCAGC              TTGTCGCACAGCGCG  47 506
JRI60_RS46395 11642337 .. 11642347 +  -8.2  -2.78463   CAGGCTGCGCATCCG                 GGGC TGA GCCC                 TCTCGTCAGGCAGGT  52 19
JRI60_RS46400 NONE
JRI60_RS46405 11645614 .. 11645639 +  -7.6  -3.02144   CCCGAGGAGGATGGG         CGGCAGCTCGA ATCCG TCGAGC-GCTG         TCTTCGGGAACATGC  52 441
JRI60_RS46420 11650388 .. 11650444 +   -12  -2.73364   GGTACCGGAAGGACC GCTCTAGTGAGTGAGCGGCCGGGATG CAGCC CATCCCGGCCGCCCGCGCCCGGGTCC TACTTCCCCTCGGCG  62 19
JRI60_RS46440 11655347 .. 11655390 +  -8.6  -2.70932   CGTCGCACTCCGACG CGAGCTGCCGCAGCAGGGCCG TGG CGGCACTGACGCGGCC-CGCG TGCTTCGCCAGCGCG  51 489
JRI60_RS46450 11661351 .. 11661371 +  -9.7  -3.14132   CGCGCTCCGCGCGAA            CTGGTCCGA CTG TCAGACCAG            TTCGTGCAAACCGCG  59 57
JRI60_RS46455 NONE
JRI60_RS46460 11664227 .. 11664247 +    -4  -3.31792   AATTGCAGCCGATCG           CGAGCCTCGG GGC CC-AGGC-CG           TTGTCCACCTGCTGC  49 209
JRI60_RS46480 NONE
JRI60_RS46485 11669787 .. 11669801 +  -6.4  -2.54193   GACACAGGCATAGCC               CTGTTC GGC GAGCAG               TGCGTTCACCTCGTG  45 206
JRI60_RS46505 NONE
JRI60_RS46510 11675363 .. 11675385 +  -2.7  -2.54812   CGGGTCCAGAGACGG          TACACGT-CG ATGT CGCACGAGTA           GTTCATCATGTCCGT  38 303
JRI60_RS46520 NONE
JRI60_RS46525 11679701 .. 11679734 +  -4.3  -4.02817   CGGACGGTAGCGGAT     GCGGTGCGGCTCCAA CGCC TCGGCGCCCAGCCGC      TTCTTCTTGTCCGCC  63 156
JRI60_RS46540 NONE
JRI60_RS46545 11683997 .. 11684017 +  -5.3  -3.40403   CACGAATTGGACATT            CGCGGATTC TTG GAACCCGGG            TTATCGTGACGCGCC  53 82
JRI60_RS46550 NONE
JRI60_RS46555 11686865 .. 11686885 +  -3.1  -3.33696   CAGGACCTCGATGGA            AGTGGCGAC GCG GATGCCACC            TTCGTTGCGGAAGGA  47 49
JRI60_RS46580 11693038 .. 11693088 + -19.2  -3.05384   CCCCTCGAGCCGGAC GACCCC-GCTTCGCAGCGGCTCCTC CCGC GAGGAGCCGC--CGAAGCGGGGGGC TTCGCTCCACACCAC  85 103
JRI60_RS46590 11696384 .. 11696412 + -10.9  -3.36749   TGCCGTCCTTCATGC        CGGCGAACATCAC CAC GTGGTGACCGCCG        TTGGTCTTCAGGCTC  64 250
JRI60_RS46600 NONE
JRI60_RS46605 NONE
JRI60_RS46610 11699920 .. 11699937 +  -6.9  -2.90075   CGTACTGCGGCAACG             TCGTCGG CGTC CCGACGC              TCTAGTTCCCCCCCG  50 3
JRI60_RS46615 NONE
JRI60_RS46620 11701487 .. 11701520 +  -9.5  -3.14051   CTGTGCACGAAGTTG     ACGTTGGCGGTGGCCT CCC AGGCCGCCGTCG-CGC     TGTTCATCGCGCTCA  59 514
JRI60_RS46640 11706362 .. 11706407 +  -4.5  -3.61398   CTCGCTCATCCAGAG CT-CGACGTGCTGCGGCGAGTG GTC CACCAGCCGCACCTCGCTGAAG TTGTTGCCACCGCGG  55 215
JRI60_RS46655 11712163 .. 11712198 +   -22  -5.75342   TCGAAGTCGGAGTGA    TGGGGGATGCCTCGCT TTGA AACGAGGCATCCCCCA     TTTTTTTTCACGGGC 100 166
JRI60_RS46675 NONE
JRI60_RS46680 11718312 .. 11718323 +  -7.2  -3.31157   CACCGGTCCGCCAGC                GCCC AGAT GGGC                 TTCGTGTCGTGGTTG  55 471
JRI60_RS46695 NONE
JRI60_RS46715 11728705 .. 11728721 +  -3.6  -2.61912   ACGCGCTCGGCCAGC              CTGACC GGTAG GGTCCG              CTTCTAGCTCCATGC  40 2
JRI60_RS46720 11729725 .. 11729735 +  -6.8  -3.28924   GCTTGCGCCCGAACA                 GCTC GCT GAGC                 TTCTCCGCCACGATG  53 318
JRI60_RS46745 NONE
JRI60_RS46750 11739510 .. 11739529 +  -4.8  -3.43203   GCATCGGGTAGGCTC            GGGCGCCC GTGC GCGCCCCC             TTCGTCTTCTGCTCG  51 30
JRI60_RS46755 11741390 .. 11741409 +  -6.3  -3.02511   CAGCGAGCGAGGCAT            CGCCGGC AGAGCC GCCGGCA             TCTTCGGCCCCTACG  49 323
JRI60_RS46765 11743018 .. 11743030 +  -6.9  -3.38316   AGGGAGCTTTCTTCG                GCGCC TCG GGTGC                TTCCTTGGCTCCTCG  56 55
JRI60_RS46775 11747401 .. 11747428 +  -7.6  -3.07291   TTTCATCGCGCAGAC        GCG-GCCGGATGG GCA CCTTCAGGCCCGC        TTGGATCAACTGCTT  52 446
JRI60_RS46815 NONE
JRI60_RS46820 11762922 .. 11762948 +  -8.7  -3.15544   TGGATGACGAGGATG         CACTGGCTCCA GATGA TGGAGTCCGTG         TTGGTGAGGATGAGC  56 207
JRI60_RS46840 11770749 .. 11770759 +  -2.4   -3.6502   CGTTGACCAGCAGGA                 TGGC CGT GCCC                 TTTCCCTGGGCGATG  51 392
        nudC 11771793 .. 11771807 +    -7  -2.72344   AGGCGTCCGGAAATC               CCAGGC GCC GCCGGG               TGGTTCGAGGTCCAG  48 54
JRI60_RS46855 NONE
JRI60_RS46870 NONE
JRI60_RS46875 11774216 .. 11774230 +    -7  -3.30124   ACGATGAAGCGCGCG               CCGCCC TCG GGACGG               TTCTCCGCGCTCAGC  53 139
JRI60_RS46895 11777329 .. 11777342 +  -5.9  -3.34043   CCGGCCGTGAGGCCC               CGGGG GCAG TCCCG                TTGTCCGCTCCTCCC  53 31
JRI60_RS46900 NONE
JRI60_RS46905 NONE
JRI60_RS46910 NONE
        pdxA 11781854 .. 11781867 +  -3.7  -3.50853   CGGTGCGCTTGGAGC               GCGGG TCGT CCGGC                TTGTGCTTCGGCGAG  50 373
JRI60_RS46930 NONE
JRI60_RS46935 NONE
JRI60_RS46940 11788801 .. 11788837 +  -9.4  -2.54586   GGACATAAACCCTAG    CGGTAGGGGGTGGGGT GGGTG ACCCCACTGCCTATGG    GTGTTACATTTTGGG  54 33
JRI60_RS46945 11790990 .. 11791005 + -10.4  -3.05384   CTCTCCATTGCATAC              GGAGCG CCAA CGCTCC               TTCCCTCGGAGGGCC  60 477
JRI60_RS46955 NONE
JRI60_RS46975 11795989 .. 11796043 +  -3.4  -2.65815   GGCAGGGAGGCCATC AGCAGCCGCGGCAACAGCCCTGTCC CACTCA GGA-AGCGCGCTTGCCGCGTCTGGA TACTCTGGATGTCGG  39 203
JRI60_RS46990 11798881 .. 11798895 +  -2.7  -2.71364   ACCCGTCCCTCTCGC               AGCGC CGCCA GCGCC               TCGTTGGCGGCCTCG  39 102
JRI60_RS47005 11802497 .. 11802511 +  -4.2  -3.41527   AGTTCCTCGTCCTGG               GGCG CACCACC CGCC               TTCTCCTCCACCTTC  49 317
JRI60_RS47015 11804081 .. 11804095 +  -4.3  -3.53012   GACCCCGGCTCCTAA               CAGAA CCTGA TTCTG               TTTCCACGACACGGC  52 16
JRI60_RS47020 11804969 .. 11804988 + -10.7  -3.07895   GTCACCCCGCACCGC            GGGACGC TAGACT GCGTCCC             TCTCTTCACCCTGGG  62 71
JRI60_RS47025 NONE
JRI60_RS47030 11807251 .. 11807274 +  -3.6  -3.61715   CCCATGACTGAACAC          GGTGGCGCAC GCTC GCCCGCCTCC           TTGTTGCAACGGCTC  51 30
JRI60_RS47035 11809474 .. 11809491 +  -3.3  -3.40403   CGCGGACGAAGTAGA             CGTCGGAG GAG CGCCG-CG             TTGTCGTGACGAAGA  47 250
JRI60_RS47045 11810637 .. 11810677 +  -6.1  -3.15544   CGCACCGCGGGTGGA TTCAGGACGCCCTCCTCG ATGAGC CG-GGAGAGCGTCTCGAG  TTGCTCGCGGTAGAG  51 189
JRI60_RS47055 11812778 .. 11812795 +  -2.5  -2.55213   ACGTCGACCGGCTCC             TCGCGGC CCTG GACGCGC              TACCTTGAGTCCGTC  38 0
JRI60_RS47085 11817346 .. 11817389 + -13.1   -2.6927   CCCGCGCCCGCGGGA C-GCCTCCCGGACTTCGCCGC GTCC GCGTCGGCG-CCGGGAGGCAG TGCTATCTGGAGGAT  67 41
JRI60_RS47100 11819944 .. 11819986 + -11.3  -2.87132   CCGCTCCCAGTGGCT TGCGCCCGTGGCGGCAGGACT CCT AG-CCT-CCGCCACGCTCGCG TATGTCCACCAAGAA  61 64
JRI60_RS47105 NONE
JRI60_RS47110 11821642 .. 11821658 +  -4.3  -2.87211   CTCCGCTCGTGCGCG              GGTCTCG GCG CGGGACG              TCTCTGGAGCCAACT  44 224
JRI60_RS47130 NONE
JRI60_RS47135 NONE
JRI60_RS47140 11826370 .. 11826420 +    -4  -3.86346   TGGAGTGAGGACGAG AAGAGCCGCTGACTCGTCTGGACG CCTCT CATCCAGA-GGGA-GGCGGCTCTG TTTGTGAGAGAATGA  57 14
JRI60_RS47145 11829673 .. 11829687 +  -4.9  -3.29144   ACCAGTTCCCCACGG               TCGCC ACACA GGCGG               TTCTGAGCAACATGA  49 217
JRI60_RS47150 11830505 .. 11830552 +  -9.2  -3.09273   CAACCCACCGTAGAA GAGTCGCTGACTCGTCCGGATG CCCTCA CATCCGG-CGGGA-GGCGGCTC TGTCTGTTCGAGCAC  59 28
JRI60_RS47155 NONE
JRI60_RS47160 NONE
JRI60_RS47165 NONE
JRI60_RS47170 11835566 .. 11835579 +  -4.5  -3.04144   CCCCTCTCGCCGGCC               CCTCT GACC GGAGG                TCTTCCACATGCGCC  45 100
JRI60_RS47175 11836967 .. 11836998 +  -3.5  -2.52464   CGGTAATCCCGCGCG      GAGGAGGCGCTCGG GGAGG CCGTGCTCC-CCAC      TGGCTTGGAGAGCAG  39 313
JRI60_RS47185 11840130 .. 11840165 +  -4.7  -2.70932   GGCTGGAAGGAGACG   CGGGCCAGCGGTTCCGA GGGG TTGG--TCGCTGGCCCA    TGCTTCGCAAGAGAG  43 84
JRI60_RS47190 11842169 .. 11842183 +  -4.2  -2.73364   GGGTGGACGGACGAG               GCCC TGGACTC GGGC               TCGTTCCCCTCCACC  42 299
JRI60_RS47200 11843303 .. 11843318 +    -6  -2.87344   GGGAGACGGCGACAC              GCGCGC TCCA GCCCGC               TATGTAACGCCCATG  48 3
        gloA 11843709 .. 11843763 + -10.5  -4.10657   GAGCTCATCCAGCAG GGCTCGTGAGCCC-CAGGTCCACCGGC CGA GCGGGTCGGCCGGCGGGCAC-CGTGCC TTTTGGCCCCTCTGG  78 17
JRI60_RS47220 NONE
JRI60_RS47225 NONE
JRI60_RS47230 11848973 .. 11849002 +  -4.9  -3.78934   AGCGCCATCCGCAAC       GCCCGCGCGCTC TCGTAAC GGGC-CTCGGGC       TTCTTCTCCAGACAG  58 209
JRI60_RS47240 NONE
JRI60_RS47245 11853215 .. 11853230 +  -6.1  -3.06671   TTCGGTGAAGCGAAT              CCCTC CAACCC GAGGG               TCTTCCAGTGCCTCT  49 78
JRI60_RS47255 11855189 .. 11855211 +  -6.3  -3.53091   GGCGGTACCGCCGTT          CCCGTC-CAC AACC GTGAGATGGG           TTTGAGCCGCACCGT  56 485
JRI60_RS47265 NONE
JRI60_RS47270 NONE
JRI60_RS47290 11862270 .. 11862299 +  -3.4  -3.59979   CCACGGGTCGTCGAG       GCCGTGGACTCG CTCGTA TGAGGCCGCTGC        TTTCGCCTCGCGGAG  49 5
JRI60_RS47300 NONE
JRI60_RS47305 NONE
JRI60_RS47310 11866684 .. 11866705 +  -7.2  -2.79831   ACGATGCGATGGATG           CCTCCGGC GCCAGG GCCGGAGA            TGTCCTCCCCGTTGG  49 177
JRI60_RS47355 NONE
JRI60_RS47360 11879196 .. 11879209 +  -5.2   -3.0263   GCCAGCGGTTGCACG               CCCG CCCGCC CGGG                TGTTCCGCGGGTGAT  47 108
JRI60_RS47365 11880985 .. 11881000 +  -6.8  -3.08996   CAAACTCCTCGCGAG              GCTTCG CCGC CGAGGC               TCTTCCATGCCCATA  52 217
JRI60_RS47370 11882095 .. 11882119 + -12.2  -3.18681   GGCGTGCTCGGTGAA          GGGGAAGGTC ACTCG GATCTTCCCC          TTCGTCGCCTTGAAG  65 210
JRI60_RS47385 NONE
JRI60_RS47390 11884457 .. 11884467 +  -2.4  -3.39216   CTGCAAGCTGACCCG                 GCGC TAG GCGA                 ATTTTTCCATGGGGA  46 19
JRI60_RS47395 11886520 .. 11886530 +  -2.4  -3.61398   TGATCAGGTCCACCA                 CCAG CAG CAGG                 TTGTTCACCGCCAGC  51 441
JRI60_RS47425 11895281 .. 11895291 +  -8.2  -3.16191   CGCAGAAGGCCCGCA                 GGCC CCA GGCC                 TTCGTGCCGGTCTCC  56 385
JRI60_RS47440 11897782 .. 11897794 +  -3.3  -2.69964   GCAGCAGGCCGACCT                GTCTC CAT GAGTC                TCCTCTCCTTCGCGC  40 16
JRI60_RS47445 NONE
JRI60_RS47450 11899670 .. 11899686 +  -4.3  -4.40003   CTCGTGAGCCAGGCG              CGAGGGG TGC CTCATCG              TTTCTCTTTCTGAGC  69 91
JRI60_RS47455 11900318 .. 11900346 +  -4.3  -2.75997   CCCAAGTCATCGAGA        GGCGCCCGCGGTG ATG CGCAGCGGACCTC        CTTCATTTCTCGGGG  43 94
JRI60_RS47460 11902302 .. 11902344 +  -9.8  -4.99035   CCCCCACTCGCGCTA CACCCACGGCACCGGTTCA CTCCAC TGT-CCGGTGCCGTGGGCA TTTTTGTCTCAGTCG 100 47
JRI60_RS47475 11905006 .. 11905044 +  -8.1  -2.82516   AGGCCGCGTTGGACA  GCGCCCCGTAGCCCTT CAGTCCGC ACGGGC-GCGGGGTGC   TCTCGTCCTCGGCCA  49 283
JRI60_RS47495 11910048 .. 11910061 +  -3.7  -3.79113   GCGCGCGCAGCACCA               CGCGC AGCA GCACG                TTCTTCTGCCCGGGT  56 185
JRI60_RS47525 11916446 .. 11916456 +  -6.8  -3.40403   GGAGGATGTAGCCGT                 GCTC GTC GAGC                 TTCTCGTCCACCGCG  53 163
JRI60_RS47550 11922240 .. 11922252 +  -3.3  -3.14132   GGGACCGCCCATGGC                ACGAG CAC CTCGC                TTGGTGCCAGGGCAC  44 132
JRI60_RS47555 NONE
JRI60_RS47560 11925522 .. 11925534 +  -4.7  -3.40403   CTCGCCGAGCAGCTC                CGCGG CGT CCACG                TTGTCGTCCACCACG  49 410
JRI60_RS47570 11932053 .. 11932066 +  -2.3  -2.56596   CGCGTCCCGATGCTC               TCCCG CCTT CCGGA                TGAATTCGTGGACGC  38 485
JRI60_RS47580 NONE
JRI60_RS47585 11934716 .. 11934743 +  -2.5  -3.61398   GACGAGGTAGCAGAG        CCCATAGACGG GGGCGG CCGTCACGGGG         TTGTTGAGCCACACG  51 330
JRI60_RS47605 11937780 .. 11937806 +  -4.9  -2.71731   CAGCTCCCCGTCCGC         GATGTGGCGCG ACAGC CGCGCCTCCGC         TGATTGGAGCGTGGG  42 199
JRI60_RS47615 11939826 .. 11939870 +  -8.6  -2.70932   CGCAGGAGCGACACA TGGGGAGGCTCCTCG-G-GGTT GAG AACCTCGCGAGCCGCCTCCCGA TCCTTGAGAAGACGC  51 486
JRI60_RS47625 11940829 .. 11940845 +  -2.1  -3.04144   GGCCACCTGTTCCGG              TGGGAGC GAC GCCCCGA              TCTTGGCGCTGGCGC  41 166
JRI60_RS47635 11943017 .. 11943034 +  -3.3   -3.1706   ATGTTGGGTGAATCC             G-CCCGGC TCT GCCTGGAC             TTCATCCAATCCGTT  45 179
JRI60_RS47645 11943627 .. 11943639 +  -3.3  -3.28712   GACCATGCGTTTGAA                GACGC AAG GAGTC                TTCTGGCGCGAGGCC  47 194
JRI60_RS47710 11962325 .. 11962347 + -15.6  -3.88777   GATACCCTCACCCCG           TCCCTCTCCC GAA GGGAGAGGGG           TTGTTGTGCTGTGTT  90 155
JRI60_RS47755 NONE
JRI60_RS47760 11971931 .. 11971944 +  -5.3  -3.61715   TGGAATCACTTTCAA               TCCTT TATC AAGGA                TTCTTCCCGCCCCTC  54 181
JRI60_RS47765 NONE
JRI60_RS47770 11974717 .. 11974740 +  -8.2  -3.09327   GCGCGTCCGGGGAAA          GCGACATGAT CTCG ATCATGTCCC           TCTTCGATGCCGTCC  56 110
JRI60_RS47775 11975376 .. 11975396 +  -6.7  -2.70932   CGCATGGTGCTACTC            CGCCTCTCC TGT GGGGGGGCC            TCGTTCACCAGGGGG  48 194
JRI60_RS47780 11976250 .. 11976284 +  -6.4   -2.5655   AGCCCCTCCTCCACC    CCGAGGTGCGCGT GCCTCGGAAA ACGCGCCCC-CGG     ATTCATCTGAATCAG  45 303
JRI60_RS47800 11980239 .. 11980260 + -10.1  -2.80113   GCGCCAGGCCGGGAG           AGCGAGGTG ACGT CACCTCGCC            TATGCTCCCGTCATG  57 50
JRI60_RS47805 11981616 .. 11981643 +  -8.3  -2.52742   GACCGGGCGAGCATT        CGCCCCTCCCC CAGGTA GGGGACGGGCC         CTCTTCTGGCCGCCT  51 139
JRI60_RS47810 NONE
JRI60_RS47815 NONE
JRI60_RS47820 11985319 .. 11985332 +  -2.3  -3.27022   TTGCTCCACATCCGC               CCGAG GAGT CTCCG                TTCATGTCGCATGGC  44 186
JRI60_RS47825 11985984 .. 11985998 +    -7  -3.45023   GTCCACTTCCGGTAC               TCGGCG TCG CGCCGC               TTCTCCTCGTACTCG  56 212
JRI60_RS47840 NONE
JRI60_RS47845 NONE
JRI60_RS47850 11992861 .. 11992884 + -12.4  -3.13899   ACATGTCAGGGTCTC          TGGCGTTCCG ACGT CGGAGCGCCG           TATTCATCCCACGTT  69 378
JRI60_RS47855 12001177 .. 12001209 + -17.7  -3.19026   AACTAGTCCGGTATC      ACGCTCCCCGGCG CCCACAC CGCCGGGGAGCGG      TTGGATCTTCCCCTC  86 35
JRI60_RS47860 12002143 .. 12002153 +  -5.4  -3.36803   TCAGGTATCGACGAA                 TCCT GAG AGGA                 TTGTCCCTGCCCTTG  51 289
JRI60_RS47870 12003394 .. 12003409 +  -8.2  -3.05384   GCCCAGGCGGATGAG              CCGCGC GGCG GTGCGG               TTGAGTGGCGCGGAG  55 56
JRI60_RS47875 12005806 .. 12005828 +  -5.4  -3.14344   CCAGCGACTCCTTCA           GGACGTCGTC GGC GATGCCGCCC           TTGCTCAGCAGGCTC  49 140
JRI60_RS47900 NONE
JRI60_RS47905 12012799 .. 12012812 +  -8.1  -3.50393   GACGTCACAGCCTGC               CACCG CTCG CGGTG                TTATCTCCAGTCACC  60 49
JRI60_RS47910 NONE
JRI60_RS47915 12014929 .. 12014941 +  -3.3  -2.72344   AGGGCCTCCCGGGTC                CCAGC CTG GCTCG                TGATTCAGGCTCACG  40 51
JRI60_RS47920 NONE
JRI60_RS47925 12016420 .. 12016435 +  -7.5  -3.32022   TCGCCGGTCCAGCTC              CGCCC GGCGCA GGGCG               TTCATGTGTACGACG  55 155
JRI60_RS47935 12018270 .. 12018280 +  -2.4   -4.2828   AGTTCATCACGTTGA                 CGAG CAG CGCG                 TTTTCATCCGTGAAC  64 432
JRI60_RS47955 NONE
JRI60_RS47960 12022907 .. 12022940 + -10.9  -3.64703   CCGGGGTGGAGGATG     AGCTTGCCCAGGTCG GCCA CGACCTGGTCATGCG      TTTCGATGAGGGGCC  69 141
JRI60_RS47975 NONE
JRI60_RS47980 12028982 .. 12029003 + -11.5  -3.65046   TGTAGCAGGCCATGA           GCGCTTCGG GTCC CCGACGCGC            TTCTTCGCCTACCGG  75 36
JRI60_RS47990 12030757 .. 12030770 +  -3.7  -3.30124   TCAAGCCTCGACCGA               GGGGC GGGG GCCAC                TTCTCGCCCATCCAA  47 286
JRI60_RS47995 12031381 .. 12031393 +  -4.8  -4.18018   CGTAGTCAGTCCTTC                TCCC GTGAA GGGA                TTTTCCGTCCACGAA  66 59
JRI60_RS48005 12033082 .. 12033100 +  -7.4  -3.40403   GGGGTTGCTGCGCAA             GACGTTCG CAG TGGACGTC             TTCTCCTGGCGCAGC  55 317
JRI60_RS48030 12039330 .. 12039344 +  -5.6  -2.85999   ACCGTGCGTGAGTAC               GTCCGG AGC CTGGGC               TATCGTGTAAAATGA  46 106
JRI60_RS48035 12041314 .. 12041330 +  -7.9  -2.56914   CGCCTGGTGCTGGCC              GCACCCG AGG CCGGTGC              TGAATTCCTCACATC  50 54
JRI60_RS48040 NONE
JRI60_RS48045 12044331 .. 12044357 +  -2.3  -4.08216   GACGGCCGCCTCAGT        CACTGCG-AC-GA CGC TCTGTTCGCCGTG        TTTTGGCAGAGGTGG  58 471
JRI60_RS48060 12048596 .. 12048627 +    -5  -3.43722   GTAGGCGTAGCGGTT      TCCGCGCTCGACCGT GAA GCCGATG-GCGCGGA      TGTTCTCTTCATAGC  51 473
JRI60_RS48090 12054020 .. 12054039 +  -8.6  -2.53263   TGAGGGGGTGTACTG            GCAGCGTGA TGG TCACGC-GC            TCACTTAAGGGTGGC  51 71
JRI60_RS48100 12058290 .. 12058307 +    -4  -3.75024   ATGGCCTTCTGGCCA             CTCGCC AGATGG GGCGCG              TTCTTCATAATGGCA  54 265
JRI60_RS48105 12059256 .. 12059282 +  -6.7  -4.07568   GCGGGTGGCTTGCCT        GGCTTCGAACGCC GAT GG-GTT-GAAGCC        TTTTGCCAACAGCCA  67 173
JRI60_RS48115 12061064 .. 12061074 +  -2.4  -4.71223   ACATCGTCATGTTGG                 GACC GCC GGCC                 TTTTCTATCTTCTCC  74 146
JRI60_RS48130 12064166 .. 12064178 +  -3.3  -3.58343   TCTATGCGCGCGGCT                ACCTC GGC GAGGC                TTTCAACCTGGTCAC  49 463
JRI60_RS48140 12066569 .. 12066587 +  -5.3  -3.64703   GCGAGCCCGAACGGG             CCTTCAA CTGCA TTGGAGG             TTTACGTCGAAGACC  57 99
JRI60_RS48145 12068667 .. 12068682 +  -4.6  -2.83073   GGCTGTTGTTGTAGA              TGGACG CCGC CGACCA               GTTCTTGGTCAGGGT  42 152
JRI60_RS48155 12073523 .. 12073541 +  -2.3  -3.14564   AGAGGGCGCGGGAAA             CTCCTGG AAGGC CCGGAAG             TTGCTGAGGGCCTCG  42 129
JRI60_RS48160 NONE
JRI60_RS48165 12076354 .. 12076374 + -16.9  -2.78813   CCACTCGATGAGGTA            CTCGGCCTC GTC GAGGCCGAG            CTTCTTGACCTCCAC  80 30
JRI60_RS48175 12078466 .. 12078478 +  -4.1  -2.57211   TCGCCCCCTGCCCGG                CTCAG GGC TTGAG                GTTGTGCCGGCGCAT  40 455
JRI60_RS48190 NONE
JRI60_RS48220 12090012 .. 12090055 + -13.1  -3.28712   CGATCGCGTACTGGA GCGCGCCGAGCACCGCGGAGG CGAG CC-CCGCGCGGCT-GGCGTGC TTCTCGAGCGCGAGC  70 212
        ligA 12096197 .. 12096213 +  -4.4  -2.86271   CGTGGAGGCGCACCG              CGTCGT AGATG ATGACG              TGCTTCTCCTGCCGG  44 358
JRI60_RS48255 12098639 .. 12098672 +  -5.1  -3.29144   TGGTGGGGCTCAGTG     CTTGAGCCCCGCCAC GTGC GTGGTGGTGGGCAGG      TTCTCCAGCCCGTGG  51 50
JRI60_RS48305 NONE
JRI60_RS48310 12110932 .. 12110945 +  -3.8  -2.74012   GCGCCTGCCGGCTCA               CGTC GATCAA GACG                TAGTTGCCATCCTGC  40 162
JRI60_RS48325 12113010 .. 12113039 + -10.7  -3.40403   ACGGCCTCCACCGAG       GAGCGGGGCGTTCC CGC GGGA-GCCCGGCTC       TTGTGGTCGAAGGCC  64 97
JRI60_RS48370 NONE
JRI60_RS48375 12120543 .. 12120554 +  -5.8  -2.63596   CGTGCCCGGCTCCAG                GTGG ATGA CCAC                 TCCTCTCGAATGAGA  44 205
JRI60_RS48380 12121050 .. 12121072 + -15.6   -3.7614   AAGACCCTCACCCCG           TCCCTCTCCC AGA GGGAGAGGGG           TTGTTGGTCGTGGTT  90 51
JRI60_RS48425 NONE
JRI60_RS48430 12133202 .. 12133214 +  -3.3  -2.62263   GTCGAGCGGAACACC                TCGCC CCC GACGA                TGCTCTCCACGGAGT  39 423
JRI60_RS48440 12135289 .. 12135341 + -21.2  -3.59262   AGTCCAGCAGTCCGT GATTCGAGGGCCGCTCCCTTCCTC TCCGC GAGGTGGGGGGCGGCCCTCGGTAC TTTCCACCTGTGAGC 100 48
JRI60_RS48445 12136619 .. 12136630 +  -2.2  -3.15861   CCAGCCTCCGAGCAG                CTCT CCCA GGAG                 TTCCTCCAGCTGCTC  44 330
JRI60_RS48470 12142037 .. 12142071 +  -7.7  -2.78463   GTCCGCGGGCCACAG    CGCCGCGGGCGG-CGT CACG GTGACCGCGGGCGGCG     TCTGGTCGACCACCT  49 488
JRI60_RS48480 NONE
JRI60_RS48485 12148032 .. 12148044 +  -4.8  -3.61398   GGCCATGGTGATGGT                GTCC TTGTT GGAC                TTCTTGCCGAAGCCA  55 192
JRI60_RS48505 12156403 .. 12156433 +  -8.3  -2.63858   CCACGGGGACATGAC      CATGGCGCATGCGC AGGC GCGGGTG-GCCATG       CTTCTCGATGTACTG  50 278
JRI60_RS48535 NONE
JRI60_RS48545 NONE
JRI60_RS48550 12167271 .. 12167285 +  -2.1  -3.31144   GAGAGGATGCGCTGG              GC-CTC GGGC GAGAGC               TTGTCGGCATGGAGC  45 458
JRI60_RS48580 NONE
JRI60_RS48585 12172584 .. 12172624 +  -5.2  -3.61398   CCAGGTAGCCGCCCC  CTCCCAGGTCCACCGC CCCCACCAT GCCGAGGGCCCGGGGG  TTCTTCACCCCGGGA  57 226
JRI60_RS48595 NONE
JRI60_RS48600 12175823 .. 12175859 + -16.5  -2.70932   TCGACCGTGTCGTGA    ACAGGAAGCCCCGGGGA AAT TCCCCAGGGCTTCCAGG    TGCTTACGGCCCCCG  77 26
JRI60_RS48605 12177497 .. 12177513 +  -3.5  -3.62522   GCACCTGCACCAGCG              CCGAGGC ATA GCCCGGG              TTGTTCACCCCCTTG  53 387
JRI60_RS48620 12179673 .. 12179697 + -17.9  -2.52464   TATTGGGAGGGCCCA          CCCCTCTCCCG CTC TGGGAGAGGGG          TCGCTTCACCCCAGG  85 62
JRI60_RS48645 12183626 .. 12183672 +  -3.7  -3.12142   GGCCGTCCGGCGACC CGGCACGGAGCGGGC-GTCCTC GAGCGG GACGGCTGCCCGCTCCC--CCG TGTGTTCCCTCTCCA  45 75
        amrS 12184799 .. 12184840 +  -5.2  -2.87132   GTGGCCGTGATGTGA CCC-GACTTC--CCCTCTCCC TCC GGGAGAGGGACGGGGTGAGGG TATCTCGAACCCCGG  46 26
JRI60_RS48655 12185549 .. 12185605 +    -8  -3.44284   GGAGGGGAACCTGGG GGACTCGATACCCTCACCCCGTCCCTCT CCC AGAGGGAGAGGG-GAGAGTGT-GGGCCC TGTTCTTCCTGGGGA  59 45
JRI60_RS48660 NONE
JRI60_RS48665 12188045 .. 12188055 +  -8.2  -3.09505   ACAGCACCTGGGTGT                 CCGG CGG CCGG                 TATTGGCTGGAGTAT  54 493
JRI60_RS48690 NONE
JRI60_RS48695 12195351 .. 12195381 + -10.2  -3.14881   AATCTCGTTGCGCTC       CACGGCGCCCGGCG AGA TGGCGTGCGCCGCG       TTGATGAGCAGGTTG  59 339
JRI60_RS48710 12198795 .. 12198824 +  -8.5  -2.78384   CGACCAGGCCCGCGA       CCCCATGACGCCCC CGA GGGGTGG-GTGGGG       TATCATGCCCGGGGC  52 68
JRI60_RS48715 NONE
JRI60_RS48720 NONE
JRI60_RS48725 12203624 .. 12203634 +  -6.8  -3.57144   CCCACCGCCAGCTCG                 CCCT GAG AGGG                 TTTCCCCATGCCCCA  58 20
JRI60_RS48730 12204595 .. 12204624 +  -6.3  -3.28712   GGGCCGCTAGGCGCG       CGCCCCCCTCACT GGAT GGTGATGGGGATG        TTGTAGAGGAAGCAC  53 31
JRI60_RS48740 NONE
JRI60_RS48745 12209402 .. 12209437 + -20.4  -3.58029   AGACACGACGTGAAT    CCGGGGCCCTCCGCGA GCAA TCGCGGGGGGCCTCTG     GTTTTTGTATACGGT 100 51
JRI60_RS48750 12211103 .. 12211121 +  -4.4  -2.90075   AGCTCGATGAAGCGC             GAGGTCGT CCG GCGGCCCC             TGTCGTTGAAGCCGC  44 418
JRI60_RS48775 NONE
JRI60_RS48780 NONE
JRI60_RS48785 NONE
JRI60_RS48790 12228921 .. 12228938 +    -4  -3.14132   ATCACCCCGAGGGAG             GCCCGG TCCACT CCGGCC              TTCCTCGGGGAACCG  45 82
JRI60_RS48825 12236965 .. 12237009 + -11.4  -3.15249   CCCATGTCATCGACA CCAGGGA-AGCTGTTCGCGGG TACA TCCGCGATCACCACTCCCTGG TTCGTCAAGAGTCTG  65 134
JRI60_RS48870 12248877 .. 12248894 + -10.5  -2.53876   GATGCGGCCGGGTGG             GCCTCGG GAGA CCGGGGC              TCACTTGGCGTCCCG  57 47
JRI60_RS48875 12250581 .. 12250596 +    -9  -3.30124   GGTGAGCTACGACCC              GAAGCC GATG GGCTTC               TTCTAGGCCGTCCCA  61 4
JRI60_RS48880 12251096 .. 12251124 +    -3  -3.91897   AGGCCGAGTCCCACC       CAGGGCAGCG-GC AGGG GCGTGCCGCCGTG        TTTCTGGGTCGGCGG  59 57
JRI60_RS48910 NONE
JRI60_RS48915 NONE
JRI60_RS48920 NONE
JRI60_RS48925 12261651 .. 12261683 +  -2.6  -3.01924   TGACCGTGGCATGCT     CCCTCTCCCTCTG GGAGAGGG CTG-GGGTGAGGG      TATTGGGAACCCATC  41 38
JRI60_RS48970 12271694 .. 12271712 +  -3.7  -3.14881   TAGGGTCTCCTGTAC             GCGTGGC CTACT GTCCCGC             TTGCTGCACGGCTTG  45 38
JRI60_RS48985 12273697 .. 12273710 +  -5.3  -3.27022   CACGTAGGGGGTAGA               GAATC CAAG GATTC                TTGCTCTCCAATGGG  51 34
JRI60_RS48990 12274119 .. 12274134 +    -9  -3.28712   CTGATGCTTCTTCCT              GGAGCT TGCG AGCTCC               TTCTCGGCGACGGCC  61 95
JRI60_RS48995 12275548 .. 12275590 +  -5.3  -2.79796   GCCCCTGCCCCGCGC CCTGAGCCGTGTGGTCCCG AGCCC CGCGTCCACTCGTCTGGGG TATCGTGGGCTACAA  45 21
JRI60_RS49000 12276262 .. 12276283 +  -2.9  -3.14931   AATGATATCCACCCG           GGAGCTG CATCAGAC CCGCTCC            TTGGTGGCACATGCG  44 67
JRI60_RS49005 NONE
JRI60_RS49010 NONE
JRI60_RS49015 12278891 .. 12278907 + -12.3  -3.21416   CGGTCCTTCGAGACC              GGCAGGT AGC ACCTGCC              TTGGTACTCGGCCTG  69 118
JRI60_RS49020 12281900 .. 12281914 +    -7  -2.87881   GGGCTCAACCCGTCA               GCGGCC CTC GGCCCC               TCTGTACCAGCCTTC  50 448
JRI60_RS49030 12283698 .. 12283717 +  -4.2  -3.25823   AAGCTCGCCCCCCGA            GCGTGCAGG CGC CCA-CACGC            TTCATCTGGGGCGGA  47 259
        hrpA 12287751 .. 12287762 +  -3.6  -4.00042   CGCGAGGCGGCTGTA                GGCG TTGC CGTC                 TTGTTTGCTCGGCGC  59 303
JRI60_RS49040 12288647 .. 12288659 +  -9.1  -3.04144   GGCGCACGGGCCCCT                CCACG CCT CGTGG                TGTTGAAACTCAAGC  57 367
JRI60_RS49055 NONE
JRI60_RS49060 12293747 .. 12293762 +    -6  -3.72324   ATACCTATTTCTCCC              GCGCGC GGTT GCGCCC               TTCTTCCTCCGCGTG  59 114
JRI60_RS49075 12296089 .. 12296124 + -20.4  -3.16564   GCCGGCGGTCACTTG    GCGGCTTGCCGTCCCG CGCG CAGGACGGCCAGCCGC     TTCGTACCGTCGAAC 100 425
JRI60_RS49105 NONE
JRI60_RS49110 12300566 .. 12300578 +  -9.1  -3.04144   GGCGCACGGGCCCCT                CCACG CCT CGTGG                TGTTGAAGCTCAAGC  57 384
JRI60_RS49115 12301802 .. 12301846 +  -2.1  -4.40963   CTCCGGCAAGGCCCC GGGCGCGAAGC-CTTGAGCGG ACGCA CCA-TCAGGTGCTTCGGGGCC TTCTTTTTCGGCCGT  65 10
JRI60_RS49120 12303626 .. 12303680 + -14.3  -2.73875   GGCCTGGCGACTCGT TCGGCCACTTCGCCGCCTGGATGCGCG GCT CGC-CATTC-GGCGACGAAGCGGCGGG TCATGTTGCGCGAGA  69 184
JRI60_RS49125 12305061 .. 12305082 + -11.5  -3.21395   TTGTCGGTTGAGTTG           CGCGTGTCG CGTA CGCCACGCG            TGTTGTAGAGCGCCT  65 305
JRI60_RS49140 NONE
JRI60_RS49145 12308904 .. 12308918 +  -8.5  -3.56559   TCAAGCTCGCACCGG               GCGCG CCGCT CGCGC               TGTTCTATTTCTTCC  62 467
JRI60_RS49210 12326739 .. 12326771 + -17.7  -3.18264   GAGTCACATGAAAAA      GGCCCGGAGACCC GCCGTCA GGGTCCCCGGGCC      TTCGTCCATCCAGGA  86 45
        truB NONE
JRI60_RS49245 NONE
JRI60_RS49250 NONE
JRI60_RS49255 NONE
JRI60_RS49260 12338390 .. 12338400 +  -2.4  -3.72576   TCCATTTCGTTGCCA                 CGGG CCT CGCG                 TTTCGTACGCGCGCC  51 81
JRI60_RS49265 NONE
JRI60_RS49270 12342831 .. 12342889 + -22.5  -2.56601   CAGAGGGCGGCCCAT CGCCCGGGGGTACGTTCTTCCGACGGAG GGGG CTCCGGGAGAAGA-CGTGCCTCCGGGCG GTGATTTTTCGTCAC 100 85
JRI60_RS49300 12350920 .. 12350963 + -15.9  -4.13014   GATAAGGACGGGAAA GGCACGTGGGCGCGGAGCC GAGACA GGCACCGGGCCCACTTGTC TTTTGGGGGTCTGGA  93 270
JRI60_RS49315 12354979 .. 12354995 + -11.5  -3.14132   CGCACGCGCCCACCT              CGCGGGC CAC GTCCGCG              TTGCTGGCCGAGGCG  65 116
JRI60_RS49350 NONE
JRI60_RS49355 12364557 .. 12364571 +   -10  -3.33696   GTCAGCAGTTGATCA               TCGGGA ACA TCCCGA               TTCCTTGAGCCCCGC  63 3
JRI60_RS49360 12365772 .. 12365804 +  -3.9  -3.08679   AGAGGGCGCTGAGCG      TGTGGGCCGTCACCG ACT CCGAGACGGGCAGCA      TCTTCAATCCCAGCG  43 294
JRI60_RS49370 NONE
JRI60_RS49375 NONE
JRI60_RS49405 NONE
JRI60_RS49410 12378676 .. 12378688 +  -2.6  -2.90688   GCCAGTGAGCATGGG                GGCG AGAAA CGTC                TGTATGCACTACTTC  40 45
JRI60_RS49415 12379851 .. 12379864 +  -8.1   -3.4072   GGTCCTCGTCGGCCG               GGAGC GGCT GCTCC                TTCTCCTCGCCCGTC  55 465
JRI60_RS49430 12381460 .. 12381487 +  -9.8  -3.75153   GAGAGGCGAGGGGCC        CGAGCCTCCGAC TCCG GTGGGAGACTCG         TTTCCCTTCGGCGGC  70 166
JRI60_RS49455 12385433 .. 12385454 + -11.5  -3.16564   GGTGTGAGGTGAAGC           CGTCCCCGG TGCT CAGGGGACG            TTGATCAGGTACAGA  66 78
JRI60_RS49465 12389063 .. 12389076 +  -3.7  -3.38272   TGACGGCCTTGCCCC               GGGAG CCCC CCCCC                TTCTCGATGGTGATG  47 238
JRI60_RS49495 NONE
JRI60_RS49500 NONE
JRI60_RS49505 12396036 .. 12396068 +  -3.4  -2.87132   CAGGAACCCGAGACC     CCCT-CCGTCCTGCCC GCC GGG-AGGACGCCATGG     TGTATGGAGAGGAAA  41 51
JRI60_RS49510 12397027 .. 12397039 +  -3.3  -2.78384   TCTCCGGTCCGCACG                CTCAG CCA CTGCG                TGTCCTGCGCCGCGG  40 97
JRI60_RS49525 NONE
JRI60_RS49530 12401112 .. 12401125 +  -3.1  -2.71791   AAACCGAATAAGACG               TCGTT TTTT AACGG                ATTTCCGCCACCGCT  40 30
JRI60_RS49535 12402786 .. 12402817 + -18.8   -4.2803   CCGGAGAGGCAGCCA      GGGCCTGATTCCCT TCCG GGGGAGTCAGGCCC       TTTTCCGTTCCCGTC 100 62
JRI60_RS49540 NONE
JRI60_RS49545 NONE
JRI60_RS49550 NONE
JRI60_RS49555 NONE
JRI60_RS49560 12408279 .. 12408326 +  -2.4  -3.62591   CGGGTCCGGACAGCA CC-TCCAGCCGCAGGGCCCGAGG CGA CTGCCGGACCGCCAGCTGGATGG TTTGCGGCTTGTGCA  51 478
JRI60_RS49580 12414961 .. 12414977 +  -2.9  -3.11024   GGCGGCGAACTGACA              GGTGC CCATTTC GCGCC              CTTTCTATTCACCGA  44 28
JRI60_RS49585 12416636 .. 12416678 +  -8.9   -3.2963   GGGACCCACATGCCT GCCCAGGCCGCCTCCCCAG AGGAA CGTGGCAGGGGACCTGGGC TTATGGGCCACTGCT  58 422
JRI60_RS49605 NONE
JRI60_RS49610 12422435 .. 12422456 +  -7.2  -3.01791   TCTGCCTCGTGTATG           AGCTCGCG CACTTT CGCGAGCA            TCTTCCCGCGCCAGT  52 479
JRI60_RS49640 12426435 .. 12426461 +  -2.2  -2.62983   AGAAGTAGACCAGCC         GTTGGCCGGA AGGACAC TCCGTCAAAC         TGGTATCGGGATAGA  38 505
JRI60_RS49660 NONE
JRI60_RS49665 12429252 .. 12429262 +  -6.8  -4.07568   ACTCGCCGGGACAGA                 TGGG CGC CCCA                 TTTTCAGAGGGAAAA  67 291
JRI60_RS49670 NONE
JRI60_RS49675 NONE
JRI60_RS49680 NONE
JRI60_RS49685 NONE
JRI60_RS49690 12434123 .. 12434143 +  -3.2  -3.29144   CTTGAGGGGCGCGAA           GGC-GCGTG CCCT CAGGCCGCC            TTGTCCGCGGACTGG  46 36
JRI60_RS49700 12438602 .. 12438612 +  -3.2  -2.82516   GCCGATGAGGATGCG                 CGTG TGG TACG                 TCTCCTCGTAGCCCA  40 481
JRI60_RS49735 12446161 .. 12446183 +  -3.3  -2.78596   TCGAGTAAGTAGGCC           CTCCCTCCC CACCC GGAAGCGAG           TATCCTGACCACCTG  40 33
JRI60_RS49740 NONE
JRI60_RS49745 NONE
JRI60_RS49750 12452889 .. 12452899 +  -8.2  -2.73875   AGCCCTCGAGCATCT                 CCGC GTA GCGG                 TGCTGTTCGAGCAGG  51 232
JRI60_RS49760 NONE
JRI60_RS49765 NONE
JRI60_RS49770 NONE
JRI60_RS49775 12458280 .. 12458313 + -11.7  -2.88544   ATTGCCCCCATGCCC     TGGTGGTCCCTAGCT TGAA GGCTGGGGGCTGCCA      TGTCTGGGAATACCG  63 43
JRI60_RS49780 12462450 .. 12462460 +  -2.4  -3.50853   TCTTGCCGGCCTCGG                 CCCG CTT CGCG                 TTCTCCTTCGCGACG  48 227
JRI60_RS49790 12464795 .. 12464839 + -22.1  -3.42395   CCTCTCCCTCCCTCC CCCTCCCCCTCTCCCTCTCCC TCT GGGAGAGGGTCGGGGTGAGGG TATTTCGATCCTCGG 100 148
JRI60_RS49795 12466607 .. 12466637 + -21.9  -3.73224   CGCGGCGTAGCACCC       CGGGGGCGTGGCC AGTAC GGCCACGCCCCTG       TTTCATGACGGCTCC 100 42
JRI60_RS49815 12469922 .. 12469949 +    -7  -3.21395   TCATACGTCGCCTCC        CGAAG-CGTGGTC ATC GACTCCGACTTCG        TCTTGTACGCGCACT  51 245
JRI60_RS49825 NONE
JRI60_RS49830 12472702 .. 12472727 + -11.9  -5.28942   GTCCACACTCAGAAG         CCCAGCAATCT CAAG GGGTTGCTGGG          TTTTTCTTTGCCCTC 100 108
JRI60_RS49860 12477740 .. 12477750 +  -8.2  -2.55361   CACTAGGAAGGTTCT                 GGCG CGT CGCC                 CTCCTTTTTAGGTCA  52 193
        ltrA 12481425 .. 12481436 +  -2.2   -4.1899   GCGGGTAACAGCGCG                TCCT GCTT AGGG                 TTTTCCATCGCCTCG  62 302
JRI60_RS49895 12485179 .. 12485210 +    -3  -4.09108   CCCTTGGGTCCTATC     GG-G-CCAGCGGGA CCCACC TCCCCCTGGTCTCC      TTTGTCTCCCTTGGC  61 445
JRI60_RS49920 12490871 .. 12490899 +  -8.1  -3.57144   CTGAACCCTACGATC        GCAACGCTCGC AGATCAG GCGGACGTTGC        TTTCAACGTACCCGC  58 234
JRI60_RS49930 12492293 .. 12492325 +  -9.8  -3.07816   GCTTCCGAGGACGGG     CGCATCCGGTGCGCG CGCT CCCGC-CCGGATGCC      TTGCGTGCGTGAGGG  60 374
         map 12494003 .. 12494021 +  -4.4  -4.30719   CCCTCGCGCTGGGGC             CAGGCGCG TAG CGCTCGTG             TTTCTTGTGGCCGAG  69 211
JRI60_RS49950 12495870 .. 12495880 +  -2.4  -3.05596   GCCGGTGCACTCTGC                 GTGG AGC CCCC                 TTGGGTACACGCCTG  41 465
JRI60_RS49960 12498479 .. 12498536 +  -3.1  -3.65902   TGCTGGATGGTGTCA GCGCCGTGGACCCCAACGGACTTCCCG GCGG CGGCGGCTTTGGCCTGGTTCACGGCGC TTTCGATGCCGTCGG  53 399
JRI60_RS49970 12498912 .. 12498932 +  -5.3  -2.62396   CGACCAGGACGTTCG            AGGCCGC CTGACCC GCGGCCG            TGGTCTCCACGACTC  44 15
JRI60_RS49975 12502005 .. 12502015 +  -6.8  -2.78384   GCCCACCGACACCGT                 CGAG CGA CTCG                 TCTACTAGGCACCCG  48 7
JRI60_RS49980 12502822 .. 12502833 +  -3.6  -2.76453   GTGGCGAGGTTGCCG                CGGC GCAC GTCG                 TGCTTAGGGTTGTCG  41 159
JRI60_RS49985 12508801 .. 12508822 +  -2.9  -3.29144   CCCGGGCATCGCGAA           GAAC-GCGGC CGT GCCGTAGATC           TTGTACGCGCCGTCG  45 240
JRI60_RS49995 12514220 .. 12514245 + -10.5  -4.42974   ACCTTCGAGTTCACA         GGGCCAGGGTCA GTA TGA-CTTGGCCC         TTTCTTGTCTATCAC  88 431
JRI60_RS50015 12518835 .. 12518871 +  -2.1  -3.88787   CTAGTGTCTCAACCA    TCCGGTGCGGTACAGGA TGA TGCTATCCCGGACCCGA    TTTCTCGCACTGTGC  54 52
JRI60_RS50040 12523078 .. 12523097 +  -5.6  -2.63913   CGGCAAGGCCGCGGA            GCCGAAGC TCCC GCTGTGGC             TCCTGTCACCTGGTC  44 74
JRI60_RS50050 12527992 .. 12528008 +  -5.1  -2.87132   GCTCGCGAGCGCGAC              GAGGC CTCGGTC GCCTC              TGTCTGGCGCCGCAC  46 121
JRI60_RS50055 12529040 .. 12529064 +  -8.5  -3.26471   AAATCATCGAAATTC          CTGGAGTGCCA GGA TGGCACTGCCG          TTGCTCTGGGCCTGG  58 131
JRI60_RS50060 NONE
JRI60_RS50065 NONE
JRI60_RS50070 NONE
JRI60_RS50075 12534749 .. 12534765 +  -9.4  -3.79906   CGGCGTTGCGCACGA              GCTCGC AGGTA GCGAGC              TTGTTCTCCCAGTAG  70 519
JRI60_RS50085 12536235 .. 12536257 +  -6.9  -3.14132   GTCCCTGCCAGACTT           CGGCTGGTC TGACT GACCGGCCA           TTGGTCCCGAGCACG  52 366
JRI60_RS50095 12538462 .. 12538486 + -14.9  -3.76224   ATTCTCGCTGAATCA          GCGCCGTCGCT CAA GGCGTCGGCGC          TTTGCTAACTACCAA  87 45
JRI60_RS50110 12541087 .. 12541107 +  -8.3  -3.05384   CGCGAGAGGCGCGTG            CTCCTGC AACTCGC GCAGGAG            TTCCGTGACCAGCAA  54 434
JRI60_RS50120 12542300 .. 12542325 +  -2.5  -2.63631   CGGCGACCGCCCTCG         AGGAGGAG-TCA CGG TGATCTCCACCC         TCGTCTCCGGCTTGC  38 9
JRI60_RS50125 12543245 .. 12543264 + -12.1  -6.06723   GCAACTCTCCCGAAA            CCGCCGG CTCCGT CCGGCGG             TTTTTTTTTGCCCGA 100 202
JRI60_RS50130 12544470 .. 12544480 +  -8.2  -3.71848   GCACCTGGACTCACA                 CGGG GGT CCCG                 TTCTTCCTACGGCCC  65 53
JRI60_RS50140 12547358 .. 12547386 +  -7.3  -3.33492   CCCCGCACGCCATCT        GGAACAGTGTCGC GGC GCGGCGCTCGTCC        TTCTCCACTCCCTGG  55 311
JRI60_RS50160 12554433 .. 12554448 +  -5.4  -3.63627   GGGTGGTGAAGCCGT              GGGAGA ACAG TTTCCC               TTTCACCTCTGGAGC  57 187
JRI60_RS50175 12561286 .. 12561310 +  -9.9  -3.27511   CCGGTCGTCGAAGCG          GCGGCCGGC CTCGATC GCCGGGCGC          TCTTCCTTGCCTTGT  59 201
JRI60_RS50185 12563420 .. 12563433 +  -3.1  -2.62184   GTCGTATTCCTGAAT               CTCGCC AGC GG-GAG               TGATGTGCCCGAGCC  39 165
JRI60_RS50195 12568038 .. 12568050 +  -3.4  -3.02263   CGTCCATGGAGATCA                GGAA CCCAT TTCC                TCTTGGGCCGGATCT  42 98
JRI60_RS50200 12569890 .. 12569902 +  -4.1  -3.32993   CCCTCTTCCTGAAGA                TTCCT GAA AGGAG                TTCCTATGTCGATCC  47 42
JRI60_RS50205 NONE
JRI60_RS50210 NONE
JRI60_RS50215 12572821 .. 12572872 +    -5  -3.15579   TGTATCGAATCCTGA ATACGCCTCCTGCCTCGGGAAAGGC ATA GTCATTCCCGAGGTCG-ATGCGCAC TTCGTGGCGCATTCC  47 236
JRI60_RS50235 12577477 .. 12577505 +  -5.2  -2.73799   GCCATGGGTCCGGAC       CGGT-CCGGGCGA GTAG TTGGCCGGTGCCG        TGGGTTGTTTCTACC  45 149
JRI60_RS50240 NONE
JRI60_RS50245 12585305 .. 12585340 +  -2.4  -3.29511   AGCCGTGCAGTCCGC    GTGACGTGCTAGC-CTC CCC GAGCGCAGGCGCCTCCC    TTCTCAGCGAGTGCC  44 22
JRI60_RS50250 NONE
JRI60_RS50265 12590116 .. 12590164 +  -4.5  -3.01712   AGCGCCAGCTCGCCC CGGCGCAGCGCGACCAGC-CCGCG CACG TGCAGCGC-GGTCGCGATCC-CCG TCTTCGCCCCCAGCG  45 404
JRI60_RS50285 12595525 .. 12595548 +  -6.7  -3.02144   CGGAGCTGAGCACGC          CCTCGTTGG AGAACA TCGACGAGG           TGTTCACGCGCATGC  51 32
JRI60_RS50290 NONE
JRI60_RS50295 12597406 .. 12597416 +  -2.4  -2.94099   GTCGGAGAACTGTTT                 GCTC CGG GCGC                 TGTCTCGTGCGGAGC  40 92
JRI60_RS50300 12598789 .. 12598809 +  -8.1  -2.70932   CCTTCGTAAGGCGCA            CCAGGGCGG ATA CGGCCCCGG            TCCTTCGAGACGGCA  51 32
JRI60_RS50320 NONE
JRI60_RS50325 NONE
JRI60_RS50330 12605188 .. 12605204 +  -7.2  -2.90723   GTGCATGGCGCCAGG              CCGGGG GCATA CCCTGG              TATGATTGCGGGTGC  50 81
JRI60_RS50335 NONE
JRI60_RS50340 12606286 .. 12606298 +  -6.9  -3.56594   GGCTCACGGGGCGCA                TGCCG CGA CGGCG                TTTCAGGACCTTTGG  58 40
JRI60_RS50345 12608879 .. 12608909 +  -3.8  -3.04792   ATGCCGTCGAAGACC       TCGATGGGCAGGCC GTT GGGGTGCCAGTCGG       TCTTGAGCATGATCG  43 491
JRI60_RS50355 12610497 .. 12610517 +    -6  -3.53761   GTCCTCGGGCTGGCC            CAGGCGCT CCAGC GGCGCCAG            TTTCGCCAGGCGTTC  53 138
JRI60_RS50375 12613498 .. 12613508 +  -2.4  -3.53012   AAGGAGACGTGAGTC                 CCCC GGT GGCG                 TTTGCAACCACAGGA  48 295
JRI60_RS50380 NONE
JRI60_RS50385 NONE
JRI60_RS50390 NONE
JRI60_RS50395 12620133 .. 12620167 +  -2.6  -3.28712   CCGCACTGGTGCGCT     GCAGGGCCGCCAGG AAACGGA CCGAGCGGGGCTGC     TTGTAGCGGGCGAGC  45 390
JRI60_RS50410 NONE
JRI60_RS50415 12624096 .. 12624115 +  -5.6  -2.85712   AGCCGTAGATGACGA            GCTTGCCC GGGC GGGCGAGG             TGCTTGTAGCTCTCG  46 362
JRI60_RS50430 12627954 .. 12627980 +  -3.7  -3.31263   TTCGGACAGGGGGCT        GTCGCGCCTCAGG ACA CCTC-GGCG-GAC        TTCTCAAGCTCCCAT  47 68
JRI60_RS50435 12629020 .. 12629052 + -18.4  -2.73875   CCGGGCTGAAGAGGA      CCACGGGCGGCTCC GGACA GGGGCCGCCCGTCG      TCGTCTTCACGGAGC  87 58
         alr 12633781 .. 12633793 +  -2.6  -3.29144   ATTGCAGCGCTCGCC                CTCG GCGCA CGGG                TTCTCGCGACAATCC  44 344
JRI60_RS50475 12637139 .. 12637163 + -20.7  -2.77182   CTGAGCGGGTGCTCC          GGCGCGCCGGC CCC GCTGGCGCGCC          TCCTTCCCTCTCCCC  95 37
JRI60_RS50480 12639177 .. 12639204 + -12.7  -2.52464   ACAACCCGCCAGGGA        CAGGCAGCGGT GAGGAG ACCGCCGCCTG         TCCCTTCGCGGGGAG  63 42
JRI60_RS50515 12646934 .. 12646976 + -19.9  -3.51232   GTGTAGGCTGGTCAA CGGGCCGGTGCGCAGGGGTC GTCA GACCCTTTCGC-CCGGCTCG TTCGTTTCAACCGAA 100 56
JRI60_RS50530 12650571 .. 12650611 + -17.5  -3.90318   CCGTTGGGGCACCCA  GGGCCTTCCCATCCACCCC GCC GAGGTGAATGGGTGGGCCC  TTTCTGCCATCATCC  95 56
JRI60_RS50535 12652247 .. 12652266 +  -8.6  -2.70932   CTGAGCTGAGTCGCT            GGCTCTCCC GCC GGGA-AGCC            TCCTTCCCGGCGCAG  52 32
JRI60_RS50540 12652919 .. 12652943 +  -9.9  -3.07994   GAAGACCCTCACCCT          AACCCTCTCCC AGA GGGAGAGGGGA          TTCACTCAGGTTCGC  62 67
JRI60_RS50555 12656589 .. 12656626 +  -8.3  -3.76224   GGGGTCTCGATACCC   TCACCCCAACCCTCTCCC AGA GGGAGAGGGA-GGAGAGG   TTTGCTCGGTAGGGG  68 290
JRI60_RS50565 NONE
JRI60_RS50570 12659377 .. 12659390 +  -3.8  -2.67803   CGGACGATGGACGAT               CCAC GGACAG GTGG                TGGATTTAGTGCGGG  41 75
JRI60_RS50575 12661972 .. 12661985 +  -4.5  -3.99957   GGTGAGGGAGGGGGT               CCGCGG ACA CC-CGG               TTTCTCGGTGTTTGA  61 36
JRI60_RS50580 12665039 .. 12665049 +  -4.6  -3.15544   AGGCCTCCCAGGCCG                 CGGC CGC GCTG                 TTCATCGCGCTCACC  47 492
JRI60_RS50590 NONE
JRI60_RS50595 NONE
JRI60_RS50600 12670020 .. 12670030 +  -2.4  -4.07568   GACCCCCTCGTTATG                 GTGG CGC CCCC                 TTTTACGAGGAGCGC  58 59
JRI60_RS50605 12670892 .. 12670911 +  -7.8  -2.74488   CCCGGTGCTGGACCG            GGCGCGCTG AAC CGG-GCGCC            TACTTCGCGTGCTTC  51 16
JRI60_RS50615 NONE
JRI60_RS50620 12673983 .. 12674025 + -13.4  -3.02263   CTCCCCTCACCTCCC ACGGGCCCA-CGGC-CGCGC TCCCC GCGCGTGCCGCTGGGCCCCC TCTTGCCCGAAGTGT  70 53
JRI60_RS50625 NONE
JRI60_RS50630 12677447 .. 12677463 +  -7.9  -2.87132   GGTACTGGGGCGCAT              GAGGCGC GCC GGGCCTC              TGTCTCAGGCCAGGC  52 24
JRI60_RS50645 12679856 .. 12679870 +  -2.8  -3.01712   CGGGGTGATGAACGA               TGCC GCGCTCG GGCA               TGTTCGCGCCCACGA  41 195
JRI60_RS50675 12691457 .. 12691469 +  -7.7  -3.54743   GGTGAGGATGGACTG                CACCA GGG TGGTG                TTCTCCTTCGTCGTC  58 79
JRI60_RS50685 12694351 .. 12694379 +    -6  -3.28712   CCAACACCCGCCCCT       GTCCGA--TGGCGG CCG CCGCCAGCTCGGCC       TTGTCCCGGGGAAGA  51 410
JRI60_RS50695 12697299 .. 12697316 +  -7.7  -3.13403   GGAGAGGGCGGGGGG             TGAGGGT CGTC ACCCTCG              TGTTCCTCGCCCCGG  54 67
JRI60_RS50705 12699546 .. 12699563 +  -9.1  -3.28712   CAAGGACACGGGCTC             GCCGCCT TCCG AGGTGGC              TTGTGCGCACGGCGC  61 79
JRI60_RS50710 12701259 .. 12701303 +  -6.7  -2.73681   GCGGTGTCCATCACA CC-GT-TGCACGAATGTTCAA CCGCA TTTAACATTCGTGCATGCAGG TCGTTCGCGTGGATC  48 41
JRI60_RS50715 NONE
JRI60_RS50720 NONE
JRI60_RS50730 NONE
JRI60_RS50735 NONE
JRI60_RS50750 12712338 .. 12712359 +  -3.6  -3.28712   TGCCGGTGCCAACAT           CCGCGGTCC CAGCC GGTCC-CGG           TTGTGCGGCGCCAAC  47 157
JRI60_RS50765 12719117 .. 12719130 +  -3.1  -3.53012   GGGCGCGCGTAGCGG               C-CCTC GGG GAGGCG               TTTCAGGCCGGGAGC  49 29
JRI60_RS50770 12720488 .. 12720517 +  -8.5  -3.55071   CAAGGCGGCGGGAGA       CACCGCGAAGCGC TGAA GCGTTTCAGGGTG        TTTCAAGGACTGTCA  62 10
JRI60_RS50775 NONE
JRI60_RS50780 NONE
JRI60_RS50785 12723007 .. 12723055 + -16.5  -3.40403   ACGTCAACGGAGGTA GGTCGCCGCCTGGCGCAGGGCCT GGG AGGCGTCGCTCCCGGAGGCGACC TTCTCGTGCGAGACG  85 45
JRI60_RS50820 12730026 .. 12730042 +  -6.5  -3.53563   CACCCGGCGGCCCCC              CGCTTCC TCG GGAGGTG              TTTCCCGCCCAGTCT  56 456
JRI60_RS50830 12731603 .. 12731620 +  -5.5  -2.78384   GACAAAGGCACGGTG             GACCGGA CAGG TCCGATC              TCTGCTCCAGAGGAA  45 159
JRI60_RS50835 12732213 .. 12732236 +  -6.6  -3.28712   CCCGCTCCTCCCGTG          GTTCCCCCGG GCAC CCGGTAGAAC           TTCTCGAAGACGCGC  53 195
JRI60_RS50910 12748775 .. 12748785 +  -5.4  -3.31461   GGACGGCCAGGTCCC                 GGAT GCC ATCC                 TTGTCGAAGTCCGTC  51 81
JRI60_RS50950 12758780 .. 12758820 +   -24  -3.72576   GGGGGCAGAGCGGTT  CATCGCGGGGCGCGGGCC AGTGA GGGCCGCGCCCCGTGGTG  TTTCATCACCGCGCC 100 49
JRI60_RS50960 NONE
JRI60_RS50965 12762046 .. 12762056 +  -2.4  -3.36273   GCCTCGGCACCAGCT                 CCTG CGT CTGG                 TTCGTGTTCAGCGCC  45 304
JRI60_RS50985 NONE
JRI60_RS50990 NONE
JRI60_RS50995 NONE
JRI60_RS51000 NONE
JRI60_RS51005 12768059 .. 12768098 +  -4.2  -2.98493   CCTGACCAACCCAAC  CCCTCTCCCTCCGGGA GAGGGAGA TAGTGGAGGGAGAGAG   TGGTTTCCTCCTCGG  44 36
JRI60_RS51010 12768748 .. 12768760 +  -6.2  -2.70932   CTCGCGGTAGCGCAC                CGCG TAGCC CGCG                TCCTTCACCCGCGAG  46 125
JRI60_RS51020 NONE
JRI60_RS51025 NONE
JRI60_RS51030 12772704 .. 12772722 +  -5.9  -3.12351   GATGTACGACGCCTG             CGCGGAG CCCGA CTCCTCG             TTCGCTCTGGCGAAG  47 314
JRI60_RS51060 NONE
JRI60_RS51065 12779433 .. 12779447 +  -2.1  -2.90496   TCCCGTCGACCCCCG              CCGCGA CACG TC-CGG               TCATTTCACCCGCGC  40 183
JRI60_RS51070 12782269 .. 12782286 + -12.7  -4.36914   TGTACTCCGTCTGAG             CGGGGAC GAAG GTCCCCG              TTTTCTCCACGAGCC  93 72
JRI60_RS51085 NONE
JRI60_RS51090 NONE
JRI60_RS51095 NONE
JRI60_RS51100 12795598 .. 12795609 +  -4.4  -3.28791   TTCGGCCCCGAGGAA                GACA AACG TGTC                 TTCTGCCCACGGGAT  49 299
JRI60_RS51105 12797442 .. 12797481 +  -8.5  -2.61264   GAGGCCTGACGGTCT  CTC-AGGGCGTGGCGTCC AGCGC GAGCTCCACGCCCTCGGG  CTTCTCGGTGACCAC  52 32
JRI60_RS51115 12798417 .. 12798437 +  -2.3  -3.25719   AAGAGGCTCCACCGC            CGCCGCCGG GTG CCGTCGAAG            TTGCTCGTCTCGTCG  44 102
JRI60_RS51140 NONE
JRI60_RS51145 12804642 .. 12804652 +  -4.6   -3.1372   GCTACGAATGGGCTC                 CTCC GCC GGGG                 TCTTCCTCCCCCATA  47 59
JRI60_RS51150 12808832 .. 12808849 +  -5.5  -2.54325   GGGGTCACTACAATG             CCCTTTC GCGG GAGGGGG              GTGTCTTTCCAAACA  44 66
JRI60_RS51155 NONE
JRI60_RS51160 12811294 .. 12811307 +  -3.7  -3.28712   CGCGCATCCCATCCA               GCAGC TGGC GCCGC                TTGTCCGGGAAGCCG  47 464
JRI60_RS51195 NONE
JRI60_RS51200 12821143 .. 12821193 +    -4  -2.52543   CCTCGCGGGAGCCCA GCGAGAGCGCCAGGTGCGCGTAGCC GGTG GGC-G-GTGCGTC-GGCGTTGTCGC TGGATTGCACGAGCT  41 191
JRI60_RS51210 NONE
JRI60_RS51215 NONE
JRI60_RS51220 12823648 .. 12823678 +   -11  -3.06796   TCCCGATACCCTCAC       CCCGACCCTCTCCC AGA GGGAGAGGGAGTGG       TTGGGTGGAGTGGGA  62 51
JRI60_RS51225 12824589 .. 12824601 +  -2.6  -3.99062   TCAACGGTATCCCCT                GCTC ATGAA GGGC                TTTCTGGTACGTCTT  57 429
JRI60_RS51245 12826895 .. 12826913 +  -2.3  -2.57931   GCGAGTACATGAAGC            GGCTCCGC CTGC GCGT-GCC             CTTCTACAGCATCGA  38 29
JRI60_RS51250 12827610 .. 12827628 +  -8.8  -2.90075   GTGTTGCCCGGACGT             GCGGTGAC GGC GTCACCGA             TGTCCTTGGAGGCAA  53 397
JRI60_RS51265 12831448 .. 12831486 +   -26  -2.52464   CCTCCTGAAAACACA   CGGGGTGGGGGCACCGGA ACC TCCGGCACCCCCACCCCG   TCACTTCACCCGAGC 100 33
JRI60_RS51290 12840977 .. 12840997 +  -5.4  -3.25823   GGGCGGGCGGCGGTC           CTCGCCAGC GCTC GC-GGTGAG            TTACTCTCGCGGCCC  51 6
JRI60_RS51295 12841954 .. 12841964 +  -3.2  -3.31144   CGCGCGGGTAGGCGG                 GCAG CAG TTGC                 TTGTCCAGCTCCACG  47 472
JRI60_RS51310 12847380 .. 12847413 +  -2.3  -3.02144   GTCTTCGCGGACTTC     CGGCGTGGGGC CCCGGTGGACTT GCGCTGCGCCG      TCTTCGCGGAGGTCC  41 69
JRI60_RS51345 12860167 .. 12860205 +   -10  -2.82623   CAGGACCTGGCCCAG   GCGAGCGCTTCCAGCGGA GAC TCCGCGAGCCGCGCCCGC   TCGTTGTCCAGGAGG  59 57
JRI60_RS51365 12864824 .. 12864836 +  -3.3  -2.71791   TGAGGTGCGTCTGAA                GCGCT GCC ATCGC                GTTTCCAGGAGGCAT  40 182
JRI60_RS51370 12865853 .. 12865869 +  -9.3  -3.60234   AGACGGGCGGTGCAT              GCTCCCG GAG CGGGCGC              TTTCGGGGTATGTGA  64 85
JRI60_RS51375 NONE
JRI60_RS51380 NONE
JRI60_RS51385 12870181 .. 12870231 +   -12  -2.57211   GATGCAGATCTGCAG GTCGCCG-C-CGTCCT-CGGCGACG AAGA TGTCGCCGGAGGAGGAGACGGTGAC GTTGTCCACGCCGGT  59 310
JRI60_RS51440 12881281 .. 12881317 +  -8.8  -2.52464   GGAGGCTCGGTACCC   TCACCCTTTCCCTCTCCC GGA GGGAGAGGGGT-GG-TGA   TGGGTTCACGGGCCC  51 47
JRI60_RS51455 12887328 .. 12887353 +  -3.1  -3.28712   TGTCCGCGAAGCGCT         CGGTGATGACG AGGG TGGCGGCACCG          TTGTGCAACCGGAAC  47 137
JRI60_RS51465 12890027 .. 12890047 +  -9.7  -3.14132   CGCGCGCCGGACGAA            CTGGTCGGA CAA TCGGACCAG            TTGCTCCCGAGCGCG  59 68
JRI60_RS51470 NONE
JRI60_RS51475 12891384 .. 12891405 +  -6.5  -3.05384   GTTCCGCTGCCGGAA           GCGCAGCTCG GTA CGAGC-GCCC           TTGAGTCCCCGCAGC  49 364
JRI60_RS51500 NONE
JRI60_RS51505 NONE
JRI60_RS51510 NONE
JRI60_RS51515 NONE
JRI60_RS51520 NONE
JRI60_RS51525 NONE
JRI60_RS51530 NONE
JRI60_RS51535 12902896 .. 12902907 +  -5.8  -3.03441   CACAACGCGCTAACA                TGGG GCTA CCCA                 TGTTCGAGCCTCATG  47 122
JRI60_RS51540 12903561 .. 12903579 + -11.6  -3.04144   AAATGAGTGCAGCCC             CCGGCGCC CCT GGCGCCGC             TGTTCCCCCTCGGCC  65 35
JRI60_RS51550 12908190 .. 12908214 +  -7.7  -3.01791   AACGACAGGTCCTGG          CCGCCGTCGGC GAA GAGGACGGTGG          TCTTCGAGGGGCGCT  52 334
JRI60_RS51585 12916051 .. 12916073 + -15.6  -3.39353   GATACCCTCACCCCG           TCCCTCTCCC GGA GGGAGAGGGG           TTGGTGTGTTGGTGT  82 508
JRI60_RS51605 NONE
JRI60_RS51610 12921221 .. 12921248 +  -4.8  -3.09327   GTCCCGCTCCTCAAC        GGAGCGTA-ATGC ACC GCGCCTGCGCTCC        TGTTAAGTGCCCTGC  47 17
JRI60_RS51615 12922152 .. 12922171 +  -4.2  -2.80492   AGTGGCCAGTCCCAC            GGCGGGTGA CGC TC-CCCTCC            TCCTTCGTGATACTC  41 17
JRI60_RS51620 NONE
JRI60_RS51625 12923952 .. 12923977 + -11.8  -2.89564   AACGCTGAGCGTCGA         GGACCTCGGG GTTCAG CCCGCGGTCC          TCTATACCCTCACCC  63 33
        bluB NONE
JRI60_RS51645 NONE
JRI60_RS51650 12932275 .. 12932287 +  -4.7  -3.28712   GGTGCCCTCGACCTT                GGCGG TGC CAGCC                TTCTGGACCGGGGCA  49 258
JRI60_RS51660 12934538 .. 12934566 +  -4.3  -3.05715   CGGCTGCTTTCTGCT        GACCGGCTGCCCG GTA TGGGCCGCTCGAC        TTGGCTCAACGGATT  45 24
JRI60_RS51665 12938464 .. 12938488 +  -7.1  -2.52082   ACACGAAGCAAGTGA          GAGCGCGCA CAGCCCA TCCGCGCTC          CTGTTGGTACTTCAT  47 67
JRI60_RS51670 NONE
JRI60_RS51675 12942804 .. 12942816 +  -9.1  -3.16564   CTTCGAGTAGTCGTG                GCGGT ACC ACCGC                TTCGTCCCGTGGAAG  56 192
JRI60_RS51695 12949557 .. 12949577 + -15.5  -3.18681   TGCGAATCACACCAA            CTGGTCCGA CTC TCGGACCAG            TTGCTCGGCTTCACG  78 50
JRI60_RS51700 12951079 .. 12951092 +  -5.9  -3.14132   CTCGCTCAGCCCGGG               GCGGG CGCT CCTGC                TTCATCCGCCGCCGG  51 151
JRI60_RS51720 NONE
JRI60_RS51725 NONE
JRI60_RS51730 12956940 .. 12956960 +  -9.7  -3.14132   CGCGCTCGGGAGCAA            CTGGTCCGA CTG TCAGACCAG            TTCGTCCGAAGCGCG  59 134
JRI60_RS51760 12964107 .. 12964118 +  -4.4  -4.07568   CAGGTCGTTGCTCTT                GAAC TAAC GTTC                 TTTTGGAGGAACCCA  62 319
JRI60_RS51775 12966206 .. 12966218 +  -6.9  -3.21593   GGTGGTACGGAGGAA                GCCTC CCT GGGGC                TCTTGTGGGGACGTA  54 94
JRI60_RS51780 NONE
JRI60_RS51795 NONE
JRI60_RS51800 NONE
JRI60_RS51805 NONE
JRI60_RS51810 NONE
JRI60_RS51815 12974559 .. 12974589 + -14.1  -3.45849   CGCCCTCTCCCGAAG       GGAGAGGGGAC TTCCTCCTC GTCCCCTCTCC       TTCTCGTGGTCTGGC  77 97
JRI60_RS51825 NONE
JRI60_RS51830 NONE
JRI60_RS51840 12984884 .. 12984918 + -13.4  -2.71364   TGAGCAGCACCTGCG     CCAGCCTCCGGTGCAC CGC GAGCACCGGGGGCAGC     TCCTTCGGCACCTCC  63 361
JRI60_RS51850 12987168 .. 12987183 +    -4  -3.29511   AACACGGGGGCCGAC              TG-CTCC ATG GGAGTCA              TTCTGCACGACTCGA  49 391
JRI60_RS51860 12989061 .. 12989079 +    -3  -3.53546   AGGGGTCCATGCGCA             TGCCGTAC ACG GCGCGGTA             TTGTCCTGTCTTCTC  50 390
JRI60_RS51875 NONE
JRI60_RS51880 NONE
JRI60_RS51885 12992602 .. 12992635 +  -6.1  -3.73534   GTTGCCAAACGCCTC     GGAGTTCG-CGTCG CTGGCGT TGACGTCGAACTTC     TTCTTGGTGCCCTTC  62 412
JRI60_RS51920 13000827 .. 13000854 +    -4  -4.15222   GGCGGATGCCGTAGA        CGTGGTGGCAGCC GCA GGCATCCAC-GCG        TTTCTTGGCACAGAT  63 521
JRI60_RS51930 13002550 .. 13002564 +  -4.9   -3.6806   GACGGGGTGAGGGTA               CCCGG CGCCC TCGGG               TTTGACTCCGTGTAT  55 69
JRI60_RS51935 13003878 .. 13003889 +  -3.6   -3.1372   GAGCGGGGGTGCACC                GGGG CGGA CTCC                 TCTTCCTGACGGGTG  45 303
JRI60_RS51965 13009287 .. 13009307 +  -5.3  -3.47227   GGGAGAGGGTGCTCG            CAACCCGCT TAC AGCTGGATG            TTCTCGTGCTTCACC  53 94
JRI60_RS51980 13015166 .. 13015181 +    -6  -3.28712   ATCCTGCAGGCCCAG              GACGGC CTCG GCCGCC               TTGTCCAGAGAGGGC  51 368
JRI60_RS52005 NONE
JRI60_RS52010 13020415 .. 13020425 +  -8.2  -2.79796   CGGTAGCCGACATAC                 CGCG CAC CGCG                 TCTCGTAGGCTCGCA  51 418
JRI60_RS52035 NONE
JRI60_RS52040 13027628 .. 13027644 +  -6.5  -2.79796   TAACAAGGTGACGGG              GCGCC TCCTCCT GGCGC              TATCCTGCCCTCCGA  47 45
JRI60_RS52045 13029031 .. 13029059 +  -4.4  -2.79183   ACGAAGTGATGGGCA        GCGGACGGTGGT ACCGC ACCCGCGTCCCC        TGTCCTCCCCCTCGC  43 108
JRI60_RS52050 13029976 .. 13030024 +  -2.4   -2.8372   CCCCCTTGATTCCCA C-CCCGTCGAGGAGTTAGTTAGT TAGC ACTAGCTAACCAATCAGCGGGCG GTTTCATGGGGCGTC  40 32
JRI60_RS52055 13030736 .. 13030760 + -12.1  -2.83164   AGATACCCTCACCCC          GTCCCTCTCCC AGG GGGAGAGGGGA          TATGATGGTCAGTCC  66 72
JRI60_RS52075 13035358 .. 13035391 + -13.1  -3.17319   CGGGTTGCGCATGCT     CCCTCTCCCCCTG GGAGAGGG CGGGGGGTGAGGG      TCTTCGTCCCTTGCC  72 42
JRI60_RS52080 13037111 .. 13037125 +    -7  -2.79796   CATCGACGTGGGACT               CGCCAC CGT GCGGCG               TATCATCCCCTCCAC  48 114
JRI60_RS52085 13037620 .. 13037660 +  -3.7  -3.62096   CTCCCAGACGGGCTG  GGTGATTCACACGCCCCTG GGG CAGAGTCGGGGGATGCACC  TTTCCCCTCCTCCGA  51 21
JRI60_RS52090 NONE
JRI60_RS52095 13040483 .. 13040495 +  -4.8  -3.99592   GAGGGCACGACATCC                CCTC TCATC GAGG                TTTGTCATCATGGCT  61 156
JRI60_RS52100 13041176 .. 13041209 + -14.7  -3.75378   GCTTCGTGAAGACCC     TCACCCC-GTCCCTCT CCC AGAGGGAGAGGGGTGA     TTGTCTTCTAGAGAT  83 46
JRI60_RS52110 13046682 .. 13046706 +  -6.4  -2.71364   CGCCGTGCGTACCTC         GGAGGACACGA GGCC TCGCG-CCTCC          TCCTTCCCGAGGTCC  47 74
JRI60_RS52115 13047458 .. 13047499 + -18.7  -4.59342   GAGAAGCGTGGCACT GGGGTGGAGCCGCGGAGCC GGGG GGCTGCGTGCCTCCACCTC  TTTCTTTATCATCCC 100 51
JRI60_RS52160 NONE
JRI60_RS52165 13064147 .. 13064166 +  -6.4  -2.82623   CCCACTTCACCGTCC            GCCGG-GAG ATC TTCACCGGC            TGCTTCTCCAGCACC  46 146
JRI60_RS52190 13067826 .. 13067857 + -10.8  -4.98061   CGCACTGCGACGACA      GCTCCGGCTCCGAAG TCT CCTTGG-GCCGGGGC      TTTTCTTTCGTCTCT 100 140
JRI60_RS52195 NONE
JRI60_RS52200 13071858 .. 13071868 +  -2.4  -3.31792   TGTAGTTGGCGTCCG                 CGCG CAC CTCG                 TTGTCCCGGTACTCG  45 325
JRI60_RS52210 13072579 .. 13072591 +  -3.3   -3.2963   GTTCTGCTGAGCATG                GTCCC GGT GCGAC                TTATCGCCGAGTCCT  46 60
JRI60_RS52215 NONE
JRI60_RS52220 13075224 .. 13075239 +  -6.1  -3.54543   TGGGCAGGTGCACGT              CTCGG ACGAAG CCGAG               TTTGAGAGACTGCCT  56 499
JRI60_RS52235 13080210 .. 13080221 +  -2.2  -4.20783   ACTCCCCGTTGTCCC                CAGG CCCC TCTG                 TTTCTTCACTAGAGT  62 63
JRI60_RS52240 13082481 .. 13082524 +  -5.2  -3.76224   AGCTCGTTTCAAAAA TGGACCTGAGAGGTCAGG TAACATGC CCTGCCTATTCAGGGCCA TTTCGTAAATGGCGC  60 173
JRI60_RS52250 13084517 .. 13084540 +  -6.6  -3.78934   GGCCTCGACAGTCCA          CCCCTGGAGT CGTA ACCCCAGGGA           TTATTGTGAGAGCAC  62 11
JRI60_RS52255 13085407 .. 13085458 +  -5.6  -2.73681   GTAGAGACCGCCATA AGCGGCGATCGCCG-GCGGAGCGAG CAG CTTGTACCGCTCGTAGGTCTCCGCG TCCTTCACATCGATC  44 293
JRI60_RS52280 13092005 .. 13092015 +  -8.2  -3.78934   ACGAGCCACCGGGTT                 GCCC GGA GGGC                 TTCTTCTGCCAGGAC  68 506
        gshB NONE
JRI60_RS52290 NONE
JRI60_RS52295 NONE
JRI60_RS52300 NONE
JRI60_RS52305 13101635 .. 13101653 +  -2.3  -3.30159   TCTCTCCGTCCCCAA             GGTGGTG GGAGA CACCGAC             TTCTAGGCACCTTCC  44 1
JRI60_RS52310 13102628 .. 13102677 + -12.4  -3.03159   CCCTGACGTCTGGAG CCGCGCT-CAGC-TC-CCCTCGCC CGTGAT GGCGAGGGAGATGCTGCAGC-CGG TGTTCGAGCCGTTGG  67 35
JRI60_RS52320 13104238 .. 13104248 +  -2.4  -3.65812   TGTCCAGCCAGATGC                 GCAG CGC CGGC                 TTCTGTTCCAGCGCC  51 241
JRI60_RS52355 13111499 .. 13111516 +  -7.7  -3.31144   CCCTGCTCCACCATC             CGCCGCAG CCC CT-CGGCG             TTGTCCACCTCCACC  55 251
JRI60_RS52365 13113768 .. 13113778 +  -2.4  -3.36273   CCAAGCGGCTCCCGT                 CCCC CCT GGTG                 TTCCTCTTGGGAACG  46 165
JRI60_RS52370 13114726 .. 13114749 + -10.2  -3.05816   GTTCACGGGCGGGAA          GACGGGGACG AGAA CGTCTCCGCC           TTGCCTGCCCACTCC  60 58
JRI60_RS52405 13122170 .. 13122200 +  -4.7  -3.72893   CGGTGACCTGCTGCT      G-CACGGTGCGCTGG CCG TCGGCGC-TCGTGGC      TTTGATGACGAACTG  58 130
JRI60_RS52420 13125850 .. 13125880 +  -5.2  -4.09685   GACGGATACCCTCAC       CCCGGCCCTCTCCC GGT GGGAGAGGGAGTGC       TTTTCCGACGTCCAG  64 72
JRI60_RS52440 NONE
JRI60_RS52445 13129807 .. 13129819 +  -5.5  -3.74526   CAAGGAGGCGAACAC                CCACT GCT GGTGG                TTCTTCAGTTCCTGC  60 476
JRI60_RS52470 13136656 .. 13136684 +  -4.4  -3.09878   CTCGCGGAACGTTTG       GCGCGGGCATGCG GTGG CGCGAGCGCG-GC        TATTGACTCCATCGC  47 355
JRI60_RS52485 13142205 .. 13142234 + -11.4  -3.31144   GCCACGGCCTTCAGC       CGCGACGCC-GCG TCGTC CGCCGGCGTCTCG       TTCTCGGACTCCGAC  67 259
JRI60_RS52505 NONE
JRI60_RS52510 13146005 .. 13146029 +  -5.5  -2.80492   TGGGCGGCGTGAGGT          TCGCGGCTCCC GGT GCCGGCCGCGG          TGGTTCCTGCTCCTC  44 82
JRI60_RS52520 NONE
JRI60_RS52525 13148815 .. 13148826 +  -7.2  -3.14132   GGTGAGGGTATACCC                GCGG GTCA CCGC                 TTCGTGGCCGGCGGC  52 149
JRI60_RS52590 NONE
        rpmH NONE
        rnpA NONE
        yidD NONE
        yidC NONE
JRI60_RS52640 NONE
JRI60_RS52645 13173210 .. 13173250 + -16.8  -3.14132   ACCTCCCTCCGGGGA  GCCTTCGGGACGGCCGCC CCCGT GGCCGTCGTGCCGGAGGC  TTCCTCGCCCCAGGG  84 40
JRI60_RS52650 NONE
JRI60_RS52655 NONE
JRI60_RS52665 13177960 .. 13177991 +    -5  -3.01712   CTCTCCGGCCGACTA      CCTCGTTTCCGTTC CGGC GAACGGTGAGGTGG       TCTTGAAAGCGGACC  45 64
JRI60_RS52670 13178802 .. 13178812 +  -3.2  -3.18912   GCCGACACCCCGAAA                 GAGG GCT TCTC                 TTCCTGCCTCGCTCC  44 85
JRI60_RS52675 13179894 .. 13179912 +  -6.6  -3.68351   CCCCTCCGGGCCGTA             CTCGCGGA TGA TCCGCTGG             TTTCCCTCCTGGAGC  59 515
JRI60_RS52695 13182908 .. 13182944 +  -2.8  -3.28924   CCCCGCGAGCCGGAC    CCGCTCGACCCACG CCAGTGCCT CCTGGGCCGTGTGG    TTCTGGAGCAGGGTG  45 173
JRI60_RS52710 13189840 .. 13189872 + -17.7  -3.03441   GACTCGATACCCTCA      CCCCGTCCCTCTCCC GGT GGGAGAGGGGTTGGG      TGTTACCAGGTGGTG  86 124
JRI60_RS52720 13192999 .. 13193018 +  -9.2  -2.74012   AATTCGTGCCGGTGA            GGCCCTCG CGCT CCAGGGCC             TCCTTGAGGTCCTCG  51 65
JRI60_RS52735 13198016 .. 13198062 + -23.1  -4.10552   CCTCCGGGAGAGGGT CGGGGTGAGGGTCGTG-CGGCC CCCG GGTCGCCACTGCCCTCACCCCG TTTCATTTCGTGGCG 100 65
JRI60_RS52750 13201004 .. 13201029 +  -4.5  -3.87373   GGCGCGTGTCTGAAT         CCCTACCTGCC TACC GACTGGTCGGG          TTTCTCCCGGCTGTC  58 46
JRI60_RS52755 13202347 .. 13202359 +  -3.3  -3.21354   AAGCCCGCGCAGGCC                CGGTA GTC TCCCG                TTCATGCGTGTCTGC  44 20
JRI60_RS52760 NONE
JRI60_RS52765 13203955 .. 13203972 +    -4  -3.48378   GGTGGCGCACGCCCT             CCCGGG CGTAGA CCCGCG              TCTTCTTCTCCCGGT  51 202
JRI60_RS52785 NONE
JRI60_RS52790 13209883 .. 13209903 + -11.9  -3.14132   GACGCTTCGCGCGAA            CTGGTCTGA CTG TCGGACCAG            TTGGTCGAGAGCGCG  66 39
JRI60_RS52795 NONE
JRI60_RS52800 13213317 .. 13213345 + -15.3   -5.1417   GATTTGCAGCCGCGA        GGGGAGGGCGG TGCGATT CCGTCCTCCCC        TTTTTCGTTTTCTCG   0 53
JRI60_RS52780 13206069 .. 13206083 -  -5.6  -2.65264   GGAGCACGGAGAGTA               GGACCT CGT AGGGCC               GGTAGCATGTAGTGG  44 151
JRI60_RS52775 NONE
JRI60_RS52770 13203754 .. 13203784 -  -9.7  -3.15544   TGTCATCCCCAGCAA       GGGGAACTACCTG CTGCC CAGGTAGGTCGCC       TCAGCGCGCCCAGAG  59 26
JRI60_RS52745 13198639 .. 13198668 -  -6.9  -2.90496   GGCCTGCCGAAATGA       CGCATCCACCCGG GCAT CCGGGAGCTCGCG        ACGAGCCGTGGAGGG  50 58
JRI60_RS52740 13197940 .. 13197950 -  -2.4  -3.78934   GGGCGCCGAGAAGAA                 GGCC AAG GCCC                 CCGTCGTCAATCCTC  55 140
JRI60_RS52730 NONE
JRI60_RS52725 NONE
        sppA NONE
JRI60_RS52705 NONE
JRI60_RS52700 13182421 .. 13182443 -  -5.4   -3.4252   CTCCATCGAGCACAA           CGCCACCGCC CCG GACGGCATCG           AGTTCCGTCTGGAGT  51 391
JRI60_RS52690 NONE
JRI60_RS52685 NONE
JRI60_RS52680 13179119 .. 13179129 -  -2.4  -3.31144   GGTCGAGGCGGACAA                 GGCC AAC GCCC                 GTCACCGCGCCGAGG  45 311
JRI60_RS52660 13174890 .. 13174902 -  -7.7  -2.87344   GATGGGTGGGAGAGA                TCCTC GAC GAGGA                GCTGGTGGCTTCGCC  50 498
        dnaA 13167691 .. 13167734 -  -5.8  -2.87211   ACTTCTTCGGACAGA CCCTCACCCCGTCCCTCTCCC GGA GGGAGAGGGGTTGG-TGCTGG TGTTGGTGGGTGGGG  46 53
JRI60_RS52610 13167045 .. 13167055 -  -8.2  -3.14132   TCTCCTCCGTACGAA                 CCGG GGC CCGG                 GTATATCCTCCTCGG  56 141
JRI60_RS52605 13166376 .. 13166391 -    -6  -3.04715   CAGTTGCCGGAAAAC              GCGCCC GGGA GGTCGC               TGGCTCAGTCGCCCA  49 30
JRI60_RS52600 NONE
JRI60_RS52595 13164712 .. 13164733 -  -2.9  -3.14564   GGACGCGCGGACGAA           CACGCTCAT CATC ACGGACGTG            GAGGCGCCGAGGCTT  44 15
JRI60_RS52585 13163157 .. 13163197 - -14.7  -2.70932   TGCGGGCCGGAAGGA CCCGGG-CGCGAGCTGCT GGGAGA AGAGGCTCGCGTCCCGGG  TGGCTTGCCGGCTCG  72 43
JRI60_RS52580 NONE
JRI60_RS52575 13160939 .. 13160952 -  -2.3  -2.93869   CAGGAGTGTAGAAAT               TCTGC GGGG GCGGA                TAATTCGGGGTGTCT  40 62
JRI60_RS52570 13160021 .. 13160036 -  -8.2  -2.62616   CCATGCCGTACAGCA              GCAGCG TGCC CGCCGC               GAACACCAGGCTCTT  52 139
JRI60_RS52565 13158741 .. 13158755 -  -4.2  -3.01924   CAGTTGTCGTGAAGA               CAACCC CAG GGGTCA               GATACCCTCACCCCG  44 23
JRI60_RS52560 NONE
JRI60_RS52555 NONE
JRI60_RS52550 13154372 .. 13154396 - -14.9  -2.68823   GTCCTTTCAGAGAAT          GCGGCGGCCGC CTC GCGACAGCCGC          CTCGGTTGATGGAGC  72 58
JRI60_RS52545 13152760 .. 13152770 -  -5.4  -2.66316   CTCGCCAGCACACGA                 GAAG GTT CTTC                 CTGTCCATAGCGGTT  44 227
JRI60_RS52540 NONE
JRI60_RS52535 NONE
JRI60_RS52530 13148433 .. 13148458 -  -3.1  -3.56727   GGGAAGGAAGTACAA         CCCCGTGCACC CGAA GGAGGACGAGA          GCCGTAAACCTTCCT  50 387
JRI60_RS52515 13145925 .. 13145937 -  -5.5  -2.57132   TCCCTGTCCCAGAAG                CGGAA CGC TCCCG                GCGAGGGCTGACGCC  44 61
JRI60_RS52500 13143238 .. 13143250 -  -3.4  -2.87564   GCATTTCGTGACACA                GAAG GCCAA CTTC                GGGCGCACGAAAGAG  41 115
JRI60_RS52495 13142670 .. 13142707 - -12.1  -5.00884   AGGGCCGGGAAAAAA   GAGAGGGCCAGCCTCC GGGACGA GGAGACCGGCCCT-TC   GTGCCTCACGGCTCC 100 65
JRI60_RS52490 13141685 .. 13141717 -  -4.9  -2.73875   CCGGCTTCAACACCA     CCTGCCAGCTGCGCG TGCCT CGCG-AGCTC-CAGG     CCCGCATCAGCAGCC  42 284
JRI60_RS52480 13138081 .. 13138112 -    -5  -3.61536   AATTCAACCTCCAAA      GGCACG-GGGTAGCC TCC GGCAACCGGCGTGGC      CCCCCTGTTGGATCC  52 96
JRI60_RS52475 13136959 .. 13136969 -  -8.2  -3.12351   GTCGCCTAGAGTGAA                 GGGC CAA GCCC                 GGCGTGCACCCGTCC  56 186
JRI60_RS52465 13133787 .. 13133811 - -12.1  -2.79183   CGCAGCCGGAGGAGA          GCAGCACTGCC CCC AGCAGCGCCGC          CCACCTCTGCGCCAG  65 45
JRI60_RS52460 NONE
JRI60_RS52455 13130132 .. 13130148 -    -8  -2.78384   TGCCTGCGGAGCAGA              GACACG CGCAC CGTGTC              GTTTCACTCCTCAGC  51 36
JRI60_RS52450 13129240 .. 13129261 -  -9.3  -3.15861   GAGTATCTGCACGAA           CGGCCACGG GCCA CCAGGGCCG            TGACGTACTACGCCC  59 166
JRI60_RS52430 NONE
JRI60_RS52425 13125826 .. 13125857 -  -6.5  -3.57144   CGCTTCACGGGGAAA     GGGCACGGGG-ACGG ATAC CCTCACCCCG-GCCC      TCTCCCGGTGGGAGA  56 235
JRI60_RS52415 NONE
JRI60_RS52410 13121760 .. 13121783 -    -8  -2.52464   GCGCCGTGGAAGCCA          CTCGGGCCCC AGGA GGTCCCCGAG           CGCATGGCCGAGCGG  48 338
JRI60_RS52400 13120344 .. 13120354 -  -3.2  -2.70932   GGTGGGCGTCAATGA                 CAGA CGC CCTG                 GCCCCGGTCCTCGAA  40 8
JRI60_RS52395 NONE
JRI60_RS52390 13118561 .. 13118576 -  -4.6  -3.14344   GAGGCGTGCGAGGAA              CCTTCG GCCA CGAGGG               TGCTCCCGATGTCGA  47 134
JRI60_RS52385 13117224 .. 13117237 -  -5.2  -2.52464   GCTCGGTGCAAGTGA               GCGC CCCTCC GCGC                TGGGTTCACGGGCGG  44 112
JRI60_RS52380 NONE
JRI60_RS52375 13114728 .. 13114747 -  -9.2  -3.02144   TCACGGGCGGGAAGA            CGGGGACG AGAA CGTCTCCG             CCTTGCCTGCCCACT  57 92
JRI60_RS52360 13111171 .. 13111226 - -14.8  -3.01712   CTGGTGGCTGCAACA CGGTG-CC-GCGGTG-GACGCGGCCGGG TCCA CCCGGC-GCGTCGCTCCGCCGCTCACCG GGGCCCAGACGGTGG  71 90
JRI60_RS52350 NONE
JRI60_RS52345 NONE
JRI60_RS52340 NONE
JRI60_RS52335 NONE
JRI60_RS52330 NONE
JRI60_RS52325 NONE
JRI60_RS52315 13102471 .. 13102486 -  -3.2  -3.37245   CTACGGCAAGATGAA              GAGCAGC GCG GC-GCCC              TATTTCAACTTCGAC  47 173
JRI60_RS52275 NONE
JRI60_RS52270 NONE
JRI60_RS52265 NONE
JRI60_RS52260 13084648 .. 13084684 -  -3.7  -3.24613   GACGAAGGAACTGAA    TGAGGCTTGGGCGAA AATCGAG TCCAACCAAGCCTAA    TCGTGACGAATCTCG  45 523
JRI60_RS52245 13082481 .. 13082496 -  -2.6  -4.56775   AGCTCGTTTCAAAAA              TGGACCT GAG AGGTC-A              GGTAACATGCCCTGC  67 41
JRI60_RS52230 13077486 .. 13077497 -  -7.2  -3.05816   CGAGCGCCGAGGCAA                CGCC TCCA GGCG                 CTCCTCTCACGGCAC  51 32
JRI60_RS52225 13074490 .. 13074511 -  -4.4  -3.07132   GAGGTAGAGAAACCA           CGATTGCT GAAATT AGCTATCG            AACTGCTTGTGAATG  45 289
JRI60_RS52205 13071228 .. 13071269 -  -5.7  -3.25823   CGTCGTGGACATCAA CCAGCCCGGC-GACGCCAGC GAG GCCGGTATCTACCAGGACGG TCCCGTCACCGGGCG  49 354
JRI60_RS52185 13066548 .. 13066562 -  -7.8  -3.33696   GCCCTTGGGAATCAA               CCCTCA AGC CGAGGG               GAGCACCTGCTCCAA  56 187
JRI60_RS52180 NONE
JRI60_RS52175 13065204 .. 13065254 -  -6.1  -2.89564   CCCTCACGTCACAGA GGCG-CGGGATTCAACCCCACCCGG GCT CCAGGTGC-ACGGAATCCCTTCGCC CCTCACCGCTCCGGC  48 28
JRI60_RS52170 13063915 .. 13063928 -  -3.7   -3.6947   ACAACTCCAAGACAA               CCTGC GTGC GCTGG                AGGTGAAGCTCGGGG  53 143
JRI60_RS52155 13060574 .. 13060596 - -10.6  -3.33151   CCGTGGAAAGCAACA           TCTTGCCCGA GCA CCAGGCAAGA           CTTGCCCGGTGCCAG  66 70
JRI60_RS52150 13058382 .. 13058400 -  -7.3  -2.70932   CTGGCCGGCGAACGA             GGCCGCG GAGGA CGCGGCG             TACAGCACCAGGTTC  48 422
JRI60_RS52140 NONE
JRI60_RS52135 13051483 .. 13051493 -  -5.4  -3.59979   GGCGTGCACCGCAAA                 CCAT GGC ATGG                 ATTCACCGCTCCTGA  54 53
JRI60_RS52130 13051106 .. 13051121 -    -6   -3.0976   GCGAAGAGCGGAAGA              GCCACG TCAC CGGGGC               AAGCCCACGCTGGCC  51 42
JRI60_RS52125 NONE
JRI60_RS52120 13047433 .. 13047443 -  -8.2  -3.23216   GTCGAGTACGAGTAA                 CGCG TCG CGCG                 AGAAGCGTGGCACTG  58 90
JRI60_RS52105 13041173 .. 13041212 -   -10  -3.01712   CGCGCTTCGTGAAGA  CCCTCACCCC-GTCCCTCT CCC AGAGGGAGAGGGGTGATTG  TCTTCTAGAGATCGC  60 30
JRI60_RS52070 13033455 .. 13033485 -  -6.8  -3.07962   GCGTAGATGGGAAGA       CCCTCACCCTAG CCCTCTC CCAGGGGGAGAG       GGGATAGACGCAGTG  52 52
JRI60_RS52065 NONE
JRI60_RS52060 13030726 .. 13030768 -  -6.3  -2.87132   CCGGGGCCCGAGATA CCCTCACCCCGTCCCTCTCCC AGG GGGAGAGGG--GATATGATGG TCAGTCCCGGTGGCC  48 26
JRI60_RS52030 NONE
JRI60_RS52025 13022370 .. 13022401 -  -5.1  -3.62224   ACACCCTTTGAACAA      GAGCGGAGTTCCTT CGCGC ACGGG-CTCCGCTC      TTGCCGCACCAACTA  54 51
JRI60_RS52020 13021154 .. 13021174 - -15.5  -3.16564   CGCGCACTCGAGCAA            CTGGTCCGA TAG TCGGACCAG            TTGGAGCAACTCGCG  78 185
JRI60_RS52015 13019694 .. 13019714 -  -6.8  -2.62184   TCTTGTTCGACACGA            CAGTGTCG ATCTG CGCCACTG            AAAGCATGAGCGAGG  45 402
JRI60_RS52000 NONE
JRI60_RS51995 13016873 .. 13016884 -  -5.8  -3.73336   ATTGGAATTCAAGAA                GGCT CGCG AGCC                 AACAGCACGCGGGGG  57 7
JRI60_RS51990 13015565 .. 13015577 -  -6.9  -3.82604   CGACTCAAGCAACAA                CGGAG AAA CCCCG                GAAGACTGGCGGCTC  64 39
JRI60_RS51985 13014888 .. 13014898 -  -5.4  -3.00022   TCCAGGGGAGAGAGA                 TGAG CGG CTCA                 GGTCTCGAAGGCGGT  47 23
JRI60_RS51975 13010107 .. 13010123 -  -4.3  -2.57092   AATCTGACTAATGCA              CCAGCCC CGG AGGCTGT              GAGAAGGCATCCACT  42 1
JRI60_RS51970 13008939 .. 13008965 -  -4.2  -3.30443   CCACGAGGAGATGAA         CCCGACGCGGCC GCG GTGCACGCCAGG         GCTGTGGGCGTACCA  49 355
JRI60_RS51960 NONE
JRI60_RS51955 NONE
JRI60_RS51950 13005702 .. 13005715 -  -3.7  -3.50853   CGTGGGCAACCACAA               CCTGC TGAC GCCGG                ACGTGAACTGCGAGG  51 275
JRI60_RS51940 13003436 .. 13003452 -  -8.7  -3.01712   CTGCCGGGGGGAAGA              CCCATCA AGG TGACGGG              GGTGGTGCGCTGGAC  54 183
JRI60_RS51925 13000489 .. 13000520 -  -6.5  -4.57073   CAGCCCGTGGAAAAA      CGACCCGAGTCCCG AACTA CGGCAC-CGGGCCA      GAGCGGAGCGCTGGC  76 165
JRI60_RS51915 12998278 .. 12998292 -  -2.8  -3.05463   ACGGGCCCCATCGAA               CTGG AGAAGGA CCAG               GACATCAGTCCCATC  42 289
JRI60_RS51910 12996779 .. 12996800 -  -5.7  -2.92613   CGGGACGGGAAACCA           CCGGGGCCA GGCT CAGCCCTGG            GTGACGATCCGGTAC  46 16
JRI60_RS51905 12995261 .. 12995273 - -10.5  -3.53444   CCACGCGCCGGTAAA                GGGGG GCT CCCCC                GCTCCAGGCCCGAGC  67 65
JRI60_RS51900 12994660 .. 12994677 -  -4.7  -3.14132   CCCGTTGTCCACGAA             GGCCTAC AGCT GCTGGCC              CTCGCTGCTCACGCG  47 11
JRI60_RS51895 NONE
JRI60_RS51890 12991888 .. 12991903 -  -4.6  -3.28924   CATCGGCGTGGAGAA              CACCAC CGGC GAGGTG               CTCTGCCGCATGCGC  49 403
JRI60_RS51870 NONE
JRI60_RS51865 12988589 .. 12988644 - -13.3  -2.59564   CTGGGAGCGGAGAAC CCCGATGGGGCCCACGTGGC-CTTCGTC GCG GACGGTGCGCC-CGTGAGCGCC-TCGGG TTGGCGCGAGGTGGG  62 302
JRI60_RS51855 12986454 .. 12986485 -  -5.6  -3.25823   CGTGCTGTACATGAA      GCGCGCCGAGTCCC TGGA GGTGCTCGGCCGGC       TGGACGACGCCGAGC  49 347
JRI60_RS51845 12984185 .. 12984216 - -12.3  -3.17075   CGCCGGGGAACCCAA      GCAG-GCCCTGGAG GCCTT CGCCAGGGCGCTGC      GCATCCGCGAGCACG  65 367
JRI60_RS51835 12979684 .. 12979704 -  -4.6  -3.84514   ATCGTAAGTACGAAA           CCCTCGTGG CAAT CCGCG-GGG            AGTTACGAGAACGAG  58 271
JRI60_RS51820 12974292 .. 12974343 -  -7.3  -3.62597   GGGACTCCTCAACAA CTTCATCATCCACAAGATCACGG ACAGCA CCGTCATCTCCCGGATGCAGAAG ACCGCCGGCTCCATC  61 287
JRI60_RS51790 12968206 .. 12968222 -  -2.1  -2.75064   GTGTGGAGGGAATCA              GGCTCGG GCG CGGAGCG              AGCTGCCGCGGCGCA  38 6
JRI60_RS51785 12967078 .. 12967097 -  -2.8  -3.53811   GGGAGCGCCCGGAAA            GCACGC TGAAGGTG ACGTGC             AACCGGCTGCCCGTG  48 353
JRI60_RS51770 NONE
JRI60_RS51765 12963786 .. 12963801 -  -4.6  -3.29471   CCTGGAGCAGATGAA              GGCCAT GCGG AAGGCC               ACGGGCGGCTGACGG  49 43
        thiM NONE
        thiE 12961185 .. 12961203 -    -8  -2.78384   TCTCGGGGGAGCAGA             GGAGGCCG CGC CGGCTCCC             GCACGAGGCACCCCC  51 56
JRI60_RS51740 12959331 .. 12959342 -  -5.8  -4.09243   GACATTCCTGCAAAA                CCGT TTTT ACGG                 TTTGCACGGAGACGC  64 107
JRI60_RS51735 12956940 .. 12956960 - -11.9  -3.14132   CGCGCTCGGGAGCAA            CTGGTCCGA CTG TCAGACCAG            TTCGTCCGAAGCGCG  66 103
JRI60_RS51715 12953750 .. 12953762 -  -3.3  -3.23598   GAAGGAAGGCATGAA                GAGCG ACC CCCTC                TCCGGGAAAAGCGGC  46 142
JRI60_RS51710 NONE
JRI60_RS51705 12950706 .. 12950716 -  -6.8  -3.57462   GAGCCGAGGGCGAAA                 TCCC CGA GGGA                 TGGCCGACCGCCAGC  56 378
JRI60_RS51690 12944495 .. 12944523 -  -6.8  -3.13403   CCCTCCTGACGAATA       CCTCGCTCGCACCA AGG TAG-GC-AGCGAGG       CACACGGCATCGACC  52 113
JRI60_RS51685 NONE
JRI60_RS51680 NONE
JRI60_RS51655 12931592 .. 12931623 - -15.9  -3.18912   GGAGGGATGGATGAA      GCTCCTCGAGGAG GAGCTA CTCCACGAGGAGC       GAGGCCAGGAGGAAG  76 494
JRI60_RS51635 12927842 .. 12927852 -  -2.4  -2.62184   GTCCGTCCGAGATTA                 TCGG AAT CCGG                 GATTTTGAGTTTCGC  38 98
JRI60_RS51630 12923758 .. 12923775 -  -6.9  -3.40299   CGACCAGATGCAGAA             CGAGCGC GCTC GCGCCCA              CAAGCTGGGCATGAA  53 279
JRI60_RS51600 12917592 .. 12917608 -  -3.6  -3.02511   GTGACTCCGGGAAGA              GAGGGC TGTCC GCACTC              TCGTCCCGGGCGCGC  44 111
JRI60_RS51595 NONE
JRI60_RS51590 12915631 .. 12915643 -  -4.7  -2.53581   TACACGGTCAATCCA                CCTGG AGT CCTGG                CTCCCCCTCTCCGAG  42 5
JRI60_RS51580 12913038 .. 12913054 -    -5  -3.21924   CGACGCGTCACAAGA              GGTGCC CGTGT GGCCCC              GCAGCAGCCTCACTG  49 35
JRI60_RS51575 NONE
JRI60_RS51570 12910529 .. 12910539 -  -2.4  -2.55999   GCAGCGTAGACGAAT                 GTGC GCG GCCC                 GCAAGCCCGCGGATT  38 54
JRI60_RS51565 NONE
JRI60_RS51560 NONE
JRI60_RS51555 12907605 .. 12907617 -  -6.2  -3.30124   CTCCAGCTTCGAGAA                GCCC GCGGA GGGC                CAGGGCATGTCGCTG  53 300
JRI60_RS51495 NONE
JRI60_RS51490 12892695 .. 12892713 -  -4.4  -3.05384   TGTCGTGGGACTCAA             CGCACGGG CAG CTCGCGCA             GGGAGAACTCCTCGA  45 3
JRI60_RS51485 NONE
JRI60_RS51480 12890878 .. 12890905 -  -5.6  -3.15544   CCCCATGGTGAGCAA        CTGA-CGCCAC TTCCCCT GTGGCGACCAG        AGCCCATCCTCCCGG  49 213
JRI60_RS51460 12887179 .. 12887205 - -13.7  -3.04263   ACCTGATCCTCAAGA         CGGTGCCCGTG GTGCT CACGGGCAGCG         GCGCGAGCTGACGGG  72 77
        otsB NONE
JRI60_RS51445 12881079 .. 12881101 -  -7.6  -2.73364   CGTGCAGCGCAAGTA           CGACCTCTTC ATC GCCGAGGTCG           TCGCCGCGTGGGTCG  51 247
JRI60_RS51435 12878905 .. 12878939 -  -2.8  -2.71144   GAGCCTCGCGAATGA    CCACCCGCTTCAGCA GATCCG TGCTCATGCG-GCGG     CGTGTATCACGCCCC  40 32
JRI60_RS51430 NONE
JRI60_RS51425 12876718 .. 12876750 - -18.4  -2.64155   TTCGGGGCAAACGCA      CGCGGACGCGCAAG ATTTG CGCGCGCGTCCGCG      AGAGGGAGACGAAAA  87 89
JRI60_RS51420 12876340 .. 12876355 -    -9  -2.81464   CCAGGAGCGATCAGA              TGGGCT CATC AGCCCA               TGCCGTCGTGGTACT  56 67
JRI60_RS51415 NONE
JRI60_RS51410 12874880 .. 12874900 - -14.1  -3.14132   CGCGCTCGGGAGCAA            CTGGTCTGA CAG TCAGACCAG            TTCGTCCGGAACGCG  73 175
JRI60_RS51405 12874147 .. 12874176 -  -7.9  -3.17571   AACCCCGCAATTCAA       TTCATG-CCCGCCA CGC CGCCGGGTCATGAA       TCAGTGGGACGAGGA  54 26
JRI60_RS51400 12873070 .. 12873087 -  -8.3  -3.54676   ACCGAGTCAAACGAA             CGCGGGC CTCA GCCCTCG              CGCACGCGCAGCACC  62 16
JRI60_RS51395 12871148 .. 12871185 -  -3.5  -3.68351   TCGCGACGATTCAAA  CGCATGGGTTCCTC-CG ATGGAG CGAGAGGAACC-ACGCT   CACACGAGCGAACCG  54 160
JRI60_RS51390 12869897 .. 12869953 - -20.2  -3.62597   GTGACGTTGCAATAA CCGGGT-CCCCC-CCCAACCCCTCTCCC TCC GGGAGAGGGACAGGGTGAGGGTATCCGG CCCCCGGGTTGAACC 100 58
JRI60_RS51360 12862346 .. 12862359 -  -2.3  -2.81208   TTGCACCCAAAAGAC               GTCTG GAAC CTGAC                ACGTCCAAGCGGAGG  40 56
JRI60_RS51355 12861699 .. 12861741 - -14.1  -2.86539   GGGAAGCGACAAGCA TGGACCCCCTTCTTCGTCG CACCT CGGTGCAGAAGGGGGCCCA ACACGATGTGACGCT  71 103
JRI60_RS51350 NONE
JRI60_RS51340 12858534 .. 12858544 -  -2.4  -3.17051   CCCCCAGGAGCAACA                 GGGC CGA GCCG                 AGGCACCGCTCTCGC  42 92
JRI60_RS51335 NONE
JRI60_RS51330 12854983 .. 12855005 - -11.2  -3.40522   ACCGCGGTAGCAGAA           GGCCGCTCGC TCT GCGAACGGGC           ACGCGGGCCGGGTCG  68 115
JRI60_RS51325 12853265 .. 12853279 - -11.4  -3.85817   ACGTCTTCCGAGAAA               CCTCCC TCG GGGAGG               GAAGCTGGTCATTGG  79 322
JRI60_RS51320 NONE
JRI60_RS51315 12847235 .. 12847245 -  -2.4  -3.34013   CAGGCGGTGAAGGAA                 GAGG TGG CCAC                 GCGCAAGCCGCCCGA  45 290
JRI60_RS51305 NONE
JRI60_RS51300 12841141 .. 12841157 -  -6.5  -2.75957   GACGAAGGTGAAGTA              CGCCC CTTCGCT GGGCG              TGGACCTCGCGGCCA  46 397
JRI60_RS51285 12838690 .. 12838711 -  -2.9  -3.14132   CGCCCCGCCCATCAA           CCCACCC CGGACAGC GGGCAGG            CGGGCGGGGGCTCGC  44 40
JRI60_RS51280 12837641 .. 12837668 -  -6.2  -2.70932   CCTCCCTGTCAATGA        GCGCAGCTTAGCG GTT CGCTCAGCGG-GC        GGCGAGTTCGACCCC  47 86
JRI60_RS51275 12836690 .. 12836714 -  -4.1  -2.53581   GACAGGGGGAATTGA          CGTGTCGGACC CCC GTTCCGACGTG          TCAGCGGCCGTCGAG  40 43
JRI60_RS51270 12831444 .. 12831489 - -22.7  -4.07568   CGGCCCTCCTGAAAA CACACGGGGTGGGGGCACCGGA ACC TCCGGCACCCCCACCCCGT-CA CTTCACCCGAGCTCT 100 265
JRI60_RS51260 12828364 .. 12828384 - -11.9  -3.16564   CGCGCATCGGACGAA            CTGGTCCGA CAG TCAGACCAG            TTGCACCCAAGCGAG  66 83
JRI60_RS51255 12827004 .. 12827034 -  -6.9  -3.41051   GCAGTGCCATGAGAA      GCTCGCG-GGCT GGGAGCAG AACCGCGCGAGC       CTCGACGAGGTCATC  53 252
JRI60_RS51240 12825061 .. 12825074 -  -2.3  -2.73364   CGTCCACCGGAATGA               CGTGC ACAT GCAGG                GACCGATGATGCGGC  38 99
JRI60_RS51235 NONE
JRI60_RS51230 12824328 .. 12824345 -  -5.5  -2.57132   CGTCGCGGCGAGAAG             GAGGACG GGGC CGTGCTC              GTCATCGCGCTCCTC  44 102
JRI60_RS51205 12820552 .. 12820563 -  -4.4  -3.86015   CACCTGTTCTAGAAA                CATG TCTC CATG                 GATGACGCTCGTCGC  58 456
JRI60_RS51190 12817688 .. 12817699 -  -2.2  -3.27476   CACACCGAAAAATTA                GGAA CGTG CTCC                 CTGGACCCCCAGTCC  44 142
JRI60_RS51185 12817014 .. 12817041 -   -12  -2.89683   ACCTCACCCCACACA        CGGGA-GAGCGGG AGG CCCCCTCCTCCCG        CCCACTGCGTGAGTC  63 39
JRI60_RS51180 NONE
JRI60_RS51175 NONE
JRI60_RS51170 12812970 .. 12813014 -  -9.5  -3.44146   GGCTGGGACAAGGAA CTCCTCCGCGTCTCTCCGGGCTC TAC AAGC-CGGAG-GACG-GGAGG-G TACGGAGCGGGCACG  63 107
JRI60_RS51165 12810822 .. 12810839 - -12.7  -2.74523   GGAGCCGCAACAGCA             GCCGGAG CAGA CTCCGGC              CCTGGCGGTGGCCTG  65 49
JRI60_RS51135 NONE
JRI60_RS51130 NONE
JRI60_RS51125 NONE
JRI60_RS51120 12797926 .. 12797947 -  -6.5  -3.14132   GCTCCGTCTCATGAA           GGAGCTCCAC ATC GAGGAGC-CC           ATGGTGACGGGGATG  51 440
JRI60_RS51110 12797180 .. 12797193 -  -9.5  -3.14344   GACGCGCGTGATGAA               GCCGG GCAA CCGGC                AGGTGGTGACGGGGC  59 275
JRI60_RS51080 NONE
JRI60_RS51075 12782084 .. 12782100 -  -5.7  -3.05844   TTTGGGATTGGAAGA              CGAGAGC TTC GCCCGCG              TCGTGGCCCCCGTGC  47 150
JRI60_RS51055 12776543 .. 12776553 -  -2.4  -3.14132   CGCGGCTCCGAGGAA                 CGCG CAT CGCC                 TTGGCAACCCACTAT  42 37
JRI60_RS51050 12776025 .. 12776042 -  -6.9  -3.00525   GCGTCGGAAATCATA             GACGGGG TGAG CGCCGTC              GAGTCGCGTCGAACG  51 79
JRI60_RS51045 12774285 .. 12774314 - -11.3  -3.01712   TGGCGCTCCCGAAGA       CGGAGGCGGCCCG GCCC CGAGCCATCCCCG        TGCGGGCCTGGCGAG  62 83
JRI60_RS51040 12772914 .. 12772924 -  -3.2  -3.32844   CGGGCGAGCGGACAA                 CCCT AGC AGAG                 CCTTCACTGCCCGTG  46 115
JRI60_RS51035 12772017 .. 12772071 -  -2.2  -2.61264   TCGGCCACGGAGAAC GTGGCG-GAGCTCGGGAGCCAGACG-TC GGC GATCATCTGTC-CCC-AGCTGTCGCCTC CGGGGCCGGGCTTCT  38 421
JRI60_RS51015 12768579 .. 12768596 -  -4.1  -3.19463   GGCACGAGCCAGGAA             GCGCCGGA GCA TCCAGC-C             ACCCCCGCCCCGCTA  47 93
JRI60_RS50980 NONE
JRI60_RS50975 NONE
JRI60_RS50970 12761380 .. 12761413 -  -3.9  -3.28712   GTTGCTGTGGCACAA    GGTGGTGT-GCCGCG CTCCTC CG-GGCAACATCACC     TTCGGGCGGCCCGCG  47 389
JRI60_RS50955 12758663 .. 12758681 -  -3.1  -2.78547   CGAGGGCACCAACCA            GGTGGCCA GCCC CGGC-ACC             GAGGCGCTCATCGGC  40 170
JRI60_RS50945 NONE
JRI60_RS50940 12754813 .. 12754829 -  -3.5  -3.54424   GGCCACCGCTGGAAA              CCGGGAG ACT CACCCCG              CGCGCTTGCCCGCCA  51 18
JRI60_RS50935 NONE
JRI60_RS50930 NONE
JRI60_RS50925 NONE
JRI60_RS50920 NONE
JRI60_RS50915 12748533 .. 12748561 - -10.1  -3.14132   GTTCCGCGGCACGAA        CCACCCGCTCCCC CGA GGGTCCCGGGTGG        AGCTCGAGGGCATGA  59 180
JRI60_RS50905 12746382 .. 12746395 -  -4.5  -3.63627   CCGTCACACCTCAAA               GGAAG TCCC CCTCC                TACCGCAACCGAGTG  55 25
JRI60_RS50900 12744519 .. 12744557 - -11.7  -3.06796   CGGGAGCCGAGGGAA   GGTGCGCATGGGAGGGA CCGGC TCCCCAGCATGCACACC   CCCTCCCGCTCCGCC  65 91
JRI60_RS50895 NONE
JRI60_RS50890 12742454 .. 12742465 -  -7.2  -3.03124   TGGCACCGTGCAAGA                CCGC CCTG GCGG                 ATTGCCACGCCCTTC  51 55
JRI60_RS50885 NONE
JRI60_RS50880 NONE
JRI60_RS50875 NONE
JRI60_RS50870 12739834 .. 12739861 - -11.2  -2.67803   GCCTCATGAAAGGCA        CTCGCGCCCCCC AGGA GGGGAGAGCGAA         CGGGCGGTCATCGGG  60 52
        kdpF 12739488 .. 12739503 -  -6.8  -2.57132   GCGGGCCTCTAGAAG              CGCTCC GGAC GGAGCA               GGGCATGGACGAGGT  47 3
        kdpA NONE
        kdpB NONE
        kdpC 12735040 .. 12735084 -  -3.4  -3.15861   GACCAGCTCGAGGAA GTCCTCGGC-ACGCCGTCG-TG TCA CAGCGCCCCCGCCGCCGAGGGC CGCGCCGAAGGGAGC  44 1
JRI60_RS50845 NONE
JRI60_RS50840 12732056 .. 12732081 -  -3.1  -3.66784   TGACCTCGAAGACAA         CACGGTTGTCG CTCA CGATGGCCGTG          GCACCTCCACCTGCG  53 12
JRI60_RS50825 12729505 .. 12729525 -  -8.1  -3.61398   CCTGCTCGGCAAGAA            GCCCCGGGC CCC GCGCGCGGC            CTCCGGGGGGGCCCG  61 103
JRI60_RS50810 NONE
JRI60_RS50805 12726034 .. 12726070 -  -6.3  -2.78596   GAGGGCCGCAGGATA    CCGGATGCGCTCTCCCG GCG CGCGAGCACCCCCCCGG    CACCACCCCGGAAGG  47 119
JRI60_RS50800 NONE
JRI60_RS50795 12723760 .. 12723775 -  -5.4  -4.25104   TCCGGCTCACGAAAA              CGAGCA GACG TGCTCA               CTCGCAGACGCGCGT  69 23
JRI60_RS50790 12722475 .. 12722522 -  -4.7  -3.14132   GTGCCCGCGGACGAA CCCGTACGACTGCCCGTGCC-GC GCGT GCTGGCCCAGGGAGCCGC-CGTG GGGGTGCTGTCGGGA  47 498
JRI60_RS50760 12713306 .. 12713330 -  -7.1  -3.06315   GCAACATTCCCAAGA          GAGCTCACCTC CGT GTAGTGAACTC          TCGGCACGCCGCGTC  51 95
JRI60_RS50755 12711850 .. 12711862 -  -4.7  -2.92613   CTCCAGGTCAAATCA                CGCGC GGG GGGCG                AGGTGCGCTGGGTGG  44 465
JRI60_RS50745 12710064 .. 12710074 -  -2.4  -4.93296   GGAGGATGAGAAAAA                 CGGC CCC GCCT                 ACCCCGAGTGAGGCC  76 24
JRI60_RS50740 12709090 .. 12709148 -  -9.5  -3.53712   ATCTTCAAGAAGTAA CGCCCCACCTCCCAACTCCTCCCTCTCCC TCT GGGAGAGGGTCGGGGTGAG-GGTAGA-CG TCCCCGTGCCCTCAC  64 60
JRI60_RS50725 12702355 .. 12702369 -  -4.2  -2.63301   GACACGTTGACAGGA               GAGGTG GAG CAGCTC               GAAGGAAGTGATCTT  41 452
JRI60_RS50700 12697199 .. 12697219 -  -4.5  -3.32946   CGGGCAACGAGAACA            TCCAGGCGG ACC CCACCGGGT            ATACGGTCAGCCTGT  49 348
JRI60_RS50690 12693804 .. 12693831 -  -7.6  -3.03771   CGAGACTCGCGAAGA        GGCCGACGCC TGGTTGAG GGCGCAGGCC         GAGCCGGCCAGACGG  52 168
JRI60_RS50680 12691330 .. 12691342 -  -4.7  -2.62184   TGCGGGTGGAGAGCA                CCGTC GGA GCCGG                GACCACGGTGCGGGT  41 83
JRI60_RS50655 NONE
JRI60_RS50650 12679504 .. 12679534 -  -8.1  -3.21099   GCCGCGGAGGATGAA       CGGCGGGTGCAGG TCGAG CTCACCCCCGCCG       GTCAGCAACTGCGCG  54 273
JRI60_RS50640 12677980 .. 12677994 -    -7  -3.65812   TTGTGCGCAATACAA               TCCGCG TGA CGCGGT               CGATGGAGCGAAGGG  61 76
JRI60_RS50635 12677229 .. 12677245 -  -2.2  -3.31144   GGTGGAGCGGGAGAA              CACGGA CGACT TCCACG              ACGTGGGGCTCAACC  45 248
JRI60_RS50610 12670594 .. 12670620 -  -3.6  -2.79183   CCGAGTTCCAGGAGA         TGCTCGGCCCCA ACG CGAAGCCGAAGA         CGCGCGAGCAGGTGC  40 316
JRI60_RS50585 12664087 .. 12664129 -  -2.6  -3.12351   TCCGTGGAGAGCGAA CTG-GGCCAG-GGCACCACG GTGCG CGTGGTGCTGCCCGCCGCCG AGGAGTGCGCCCGGG  41 504
JRI60_RS50560 12656404 .. 12656416 -  -6.2   -4.2717   ACCAGTTGAGGAAAA                CCGC GCCCG GCGG                GTCCTTCTCCCCTGG  70 304
JRI60_RS50550 NONE
JRI60_RS50545 12652909 .. 12652941 -  -3.4  -3.01924   GACTCGGGGGGAAGA      CCCTCACCCT AACCCTCTCCCAG AGGGAGAGGG      GATTCACTCAGGTTC  42 1
JRI60_RS50525 12647721 .. 12647739 -  -8.1  -3.55071   GGACATCCGTGGAAA            GCGGCCGG AGGT CCGG-CGC             GGTGAGGTGGCTGTC  60 109
JRI60_RS50520 12647239 .. 12647283 -  -5.3  -3.65314   CGGAAGGTCGAAGAA GGCAGGCGAGGCAGCGCCCCC CCA GGAGGCGCACCGCCGTGAGCC GGGCGAACCGGAAGC  57 109
JRI60_RS50510 NONE
JRI60_RS50505 NONE
JRI60_RS50500 NONE
JRI60_RS50495 12641942 .. 12641965 - -10.3  -2.78384   CTCGTCTCCAGGAGA          GGAGCGCGCC GGGGA GGC-CGCTCC          TTACTGGATGGTGTA  57 26
JRI60_RS50490 NONE
JRI60_RS50485 12639166 .. 12639216 - -25.6  -3.51924   GCGCGACTGACACAA CCCGC-CAGGGACAGGCAGCGGT GAGGAG ACCGCCGCCTGTCCCTTCGCGGG GAGGCTCCCTACTTC 100 34
JRI60_RS50470 12635023 .. 12635036 -  -2.3   -2.7185   ACCACTGCGGAACGA               CACCC CTCA GAGCG                CGACGCCCTCGGCTG  38 18
JRI60_RS50465 12634611 .. 12634662 -  -6.4    -3.214   GCCAGCAGACGAATA CCGCCACAC-CGACCAGGGTCACCT TGA ACGCGACCCGCCTCGAGCGTGTCGG CTCACCCCACATGTC  51 178
JRI60_RS50455 12631762 .. 12631818 - -10.5  -2.68072   CCTATCACAAGTAAG CCCGCTCCCCCTCCACCTCCCTCTCCC ACC GGGAGAGGGTCGGGGTGAGGGTACCCG TCACCGTGCGCCACC  57 51
JRI60_RS50450 NONE
JRI60_RS50445 NONE
JRI60_RS50440 12629017 .. 12629055 - -15.9  -3.01712   GCGCCGGGCTGAAGA   GGACCACGGGCGGCTCC GGACA GGGGCCGCCCGTCGTCG   TCTTCACGGAGCGGG  77 29
JRI60_RS50425 12624845 .. 12624856 -  -5.8  -4.09685   CCGGACTCCTGAAAA                GAGG GGGA CCTC                 CCGGGCGCGCTTTTC  64 102
JRI60_RS50420 12623704 .. 12623730 -  -7.3  -3.27475   GCGTCGAGGAGAAGA        CAGCCAGACCCC AGTT GGGACCTGG-TG         GAAGCGGGCCAGCAA  54 65
JRI60_RS50405 12620063 .. 12620076 -  -9.5  -3.46563   GAGAGATTAGCACAA               CCGGC TCAA GCCGG                AGCGCCGTGCTGGGC  63 17
JRI60_RS50400 12619735 .. 12619753 -  -9.5  -2.70932   GCCCGTCTCGAAGGA             CCGGGGC CGTCC GCCCCAG             TCCGTCGACCCCTGA  55 57
JRI60_RS50370 12612132 .. 12612159 - -10.5  -2.87468   CTGGAGCATAGGACA        CCGCCAGCTGC CCCATC ACCGCTGGCGG         GGCACGAATCAGCCC  59 34
JRI60_RS50365 12611263 .. 12611278 -  -4.6  -2.78384   GCGGGGGCCAGGACA              GGCCGT TTGG ACGTCC               GCTCCCCAGACGCCC  43 40
JRI60_RS50360 12610037 .. 12610056 -  -4.8  -3.87815   CCGGATTCGCAGAAA            TCCCGCGC CGCC GCGCTGGC             TTCGCACAACCGGAT  61 364
JRI60_RS50350 12608418 .. 12608448 -  -8.9  -4.36914   TCGCGCGGTAGAAAA       GGCCGCGCGGA AGGGGGAAA CCCGCGTGGCC       AGTCGAGCAAACGGG  79 50
JRI60_RS50315 NONE
JRI60_RS50310 12599461 .. 12599477 -  -7.9  -2.75252   ACGAGGGCAAGACCA              GCGGGAG CAC CTCGCGC              AAATGAGCCGCTCGA  51 154
JRI60_RS50305 12598485 .. 12598506 -  -4.3  -3.03124   CCGCATCCGGGAACA           CGCCGGG CGTCCCTT CACGGCG            GAGTGGATGCAACGG  45 371
JRI60_RS50280 NONE
JRI60_RS50275 NONE
JRI60_RS50270 12589638 .. 12589676 - -14.4  -2.53263   GGCACCGCGAACCGA   GCTCGCGGCGCTCCTCTG GCG CAAGGGCGCGCCGCGCAC   CCCCGCGGCGGAGCT  65 110
JRI60_RS50260 NONE
JRI60_RS50255 12585371 .. 12585383 -  -3.3  -3.23216   CGTCATGACCATCAA                GAGCA TCC CGCCC                CGCCCTCCGGGCATG  45 293
JRI60_RS50230 NONE
JRI60_RS50225 12573479 .. 12573514 -   -14  -2.63596   GCCTACCCCAGACCA    GCCCCCGCC-TCGCA TGGGGTG TGCGGCGGCGGGGGC    CGTGGCGCCTACGCG  69 34
JRI60_RS50220 12572550 .. 12572561 -  -2.2  -3.63991   CAGGATGCTGAACAA                GAAG CCCT CTCC                 GCGGCCCACGATGCG  51 169
JRI60_RS50190 12563227 .. 12563274 -  -7.7  -3.14931   CCCACCTCGGACGAA CGGCCCGAGCCCCAGGATGA AGCATCCGG CCATCCTGGAGC-CGGGACT CATTGAACGAGGCCC  54 54
JRI60_RS50180 NONE
JRI60_RS50170 NONE
JRI60_RS50165 NONE
JRI60_RS50155 12552173 .. 12552185 -  -4.7  -3.65812   CCTTCTCGAACAGAA                CGGCG GCG CGGCG                CTCGTCCTTGTCCAC  55 184
JRI60_RS50150 12548493 .. 12548515 -  -3.3  -3.53012   TCCCCCTCGTTGAAA           GCGCTTCTG GGACA CAGGAGCCC           ACGAGCGGAGGAGTC  49 59
JRI60_RS50145 12547130 .. 12547151 -  -6.5  -3.62224   AGACGCGCTGAAGAA           GGACGACAG CGCG CTGCTGTCC            GAGGCGGGCTTCCAG  56 191
JRI60_RS50135 12544208 .. 12544239 -  -8.6  -3.45737   CAAGCAGTACCAGAA      GCAGCTCGACGTCG CGCG CGACATCGCGTCGC       AGCTCGCCGGAGGCA  61 273
JRI60_RS50115 12540578 .. 12540614 - -16.6  -3.31144   GGTCGAGCGCGAGAA   GCGCGCCCTCGAGCAGC GGCG GCAGCTCAAGG-CGCGC    ATCGCGCGGTAGAGT  83 141
JRI60_RS50105 12539662 .. 12539679 -  -6.9  -4.18488   ACCCAGTTCAAGAAA             CTCCCTC GCCG GCGGGAG              GACTCAGTGTTCCCG  72 64
JRI60_RS50100 12538036 .. 12538060 - -13.6   -3.6215   GCAAGTCAGGTGAAA          CCACCGGCCA GGTGG TGGCCGGTGA          AATCACCAGCCTGGA  79 460
JRI60_RS50090 12535840 .. 12535861 -  -5.1  -4.09243   CATACGGTCTGAAAA           CCG-GAACGG TAC CCCTTCTCGG           CCGGGTCGGGCTCGG  65 515
JRI60_RS50080 12534036 .. 12534057 -  -6.5  -3.65046   GCCTGACGTCAAGAA           GCACCTCGCC TTC GGCCAGG-GC           CTCCATTTCTGCATC  59 250
JRI60_RS50045 12522828 .. 12522841 -  -5.2  -3.29144   CCAGGGGCTCTACAA               CGGC ATCCTG GCCG                CGGGCCTGGCCTGGG  51 400
JRI60_RS50030 12521215 .. 12521225 -  -2.4  -3.16564   GTTCCAGGCGAGGAA                 CTCC TAG GGGG                 CCGAGCCGTCGGAGC  42 18
JRI60_RS50020 12518751 .. 12518787 -  -5.9  -3.31144   GCTGGAGCGCCACAA   CTTC--CTCTCGCCGAG TCAGG CCCGGCGAGAGCTGATG   CAGTCGAAGCAGGTG  53 212
JRI60_RS50010 12517526 .. 12517537 -  -4.4    -3.889   CTGAAGCACATTAAA                CGTA GCTC TACG                 TACGTGGGAGGCCCG  58 21
JRI60_RS50005 NONE
JRI60_RS50000 12514394 .. 12514426 -  -2.1  -4.58283   TAAGGGTTTGAAAAA     CCCTAGTCGCTCATA GTGTT TA-GAGCG-CTACGG     CCACCGCCAGACGGC  70 20
JRI60_RS49990 12508718 .. 12508742 -  -7.8  -2.70932   CGGGCTCCCGAATCA         GACGGGCGAGC TGTG GC-CGCGCGTC          AGTCGTGCCGCCCCC  51 24
JRI60_RS49955 12495821 .. 12495837 -  -6.5   -3.2918   AGAGAGGCAGAGGAA              GGCCGCT GAC AGCAACC              CACGGGCTGTGAGCC  53 448
JRI60_RS49940 12492469 .. 12492483 -  -5.6  -3.70149   CCGACAGGACGCAAA               CCCCGA CCC CCAGGG               CAGCGGCACCGGCAG  57 216
JRI60_RS49935 12491688 .. 12491723 -  -4.6  -3.61398   CGCCGCTTCCAATAA    GGGACCTCAAGAGCGC CTTC GTGCTCTTCAGTTCCG     CTCAGGGGGGCACAC  55 263
JRI60_RS49925 12490335 .. 12490354 -    -2  -3.68351   GCTGGACGATGGAAA            GTTCCAGC TGCG GCTGCACC             CTGATCGCCCTTTGA  51 506
JRI60_RS49915 NONE
        tnpB 12488351 .. 12488371 -  -8.9  -2.78384   TCGCCGCTCATGATA            CGGGACATG AGC CACGGCCCG            GCCCCTCAACGCAAG  52 49
JRI60_RS49905 12486417 .. 12486428 -  -2.2  -4.81249   GCGGAAAGTCAAAAA                GGAA ATTT CTCC                 AATCCTCAGTGTTGA  74 279
JRI60_RS49900 12484675 .. 12484715 - -12.6  -2.66316   CGCGGGAGTACACGA GGGCCAGACGTTG-ACCAC GGTG GTGGCACAACTGCTGGCCC  TGGTGGGGACGATGA  62 188
JRI60_RS49890 12483893 .. 12483906 -  -3.1  -2.72344   CCCCATCCCCAACGA               GCG-AG TCG CTACGC               CCAGTGCACCCGGCG  40 20
JRI60_RS49885 12482542 .. 12482559 -  -5.5  -2.88249   TACAGGCGGTACAGA             GGAACCG TTCC CGGTTCT              TGGGTAGACATGCAT  46 411
JRI60_RS49865 12477362 .. 12477395 -  -8.1  -3.01712   CTCGGCGGGGGAACA     GGT-GGAGCTTGCCGC GTG GCAGGAGGCTCCCACC     CCCCCAAATGGTGCT  53 471
JRI60_RS49855 12476866 .. 12476878 -  -6.9  -3.64703   GTTCCGTGACGCAAA                CCCCA ACG CGGGG                GGGCTCCGTCACTGC  61 150
JRI60_RS49850 NONE
JRI60_RS49845 NONE
JRI60_RS49840 NONE
JRI60_RS49835 12472664 .. 12472686 - -13.4  -3.16742   GCGAAGCGTGACGAA           GCGGCGGG TTCGATT CCCGCCGC           GTCCACACTCAGAAG  72 99
JRI60_RS49820 12469235 .. 12469245 -  -2.4  -3.96327   ATGGGGCAGGAGAAA                 GGCG CGA CGTC                 GGCGGCTGTGGGTGA  56 506
JRI60_RS49810 12468769 .. 12468798 -  -2.8  -2.78596   CACGCCGCCATGACA       GGCCT-CCGCC AAGACAGAA GGCGGGAGGCT       GGGATGTGACACGGC  40 65
JRI60_RS49805 NONE
JRI60_RS49800 12466317 .. 12466339 -  -3.4  -3.18681   GTGCAATGGCACCAA          CG-CCCAGA AGTTCG CCTGGGACG           GCGCCCGGCTGAAGA  45 326
JRI60_RS49785 12461954 .. 12461997 -  -2.3  -3.75024   TGCCAGGACCAACAA GCTCCACATGGAGTTCGGC GTGATG GCGGAGCTGCACCTGAAGC TGGGGCAACCCCGCG  55 296
JRI60_RS49755 12452409 .. 12452434 -    -6   -3.6502   CAGGCCGGAGCGAAA         CCTCACGCTG GTCACG CAGCGGGTGG          ACGCGCAGATGGTGA  57 325
JRI60_RS49730 NONE
JRI60_RS49725 12444610 .. 12444629 - -10.6  -4.08853   GGGAACAGGAAAGAA            CGGCGGCC CTCT GGCCGCCC             GAGGCGGATGTAGCC  81 79
JRI60_RS49720 NONE
JRI60_RS49715 12442299 .. 12442315 -  -2.1  -2.58714   TGCGATACGAAGTCA              TGTCAGC CGT GCGGCCA              GCCTACCATCATCCC  38 34
JRI60_RS49710 12439046 .. 12439071 -  -6.1  -3.66654   GAGCGGAAGGGGAAA         GGTTACTGACC GGTA GGTAAGTACCC          CATTTACGCGTGGCA  59 122
JRI60_RS49705 12438111 .. 12438129 -  -7.3  -3.54424   CCCGAGCGTCCCAAA             GCGGGGC GTCCG GCCTCGC             GCCGTCAGACGAAGT  58 30
JRI60_RS49695 12434079 .. 12434098 -  -3.4  -3.07816   CGGCGAGGGACGCAA            CGTGCCCC CGGT GGAACGCG             CCTCCACCCCTTGAG  42 61
JRI60_RS49650 12426054 .. 12426088 -  -4.8  -3.53298   AGGATCGGAAAGGAA     CTGCTGGTGACGGCCG GCG CGGGCGGTAGCAACAG     CGCACGAGCCCGACT  52 106
JRI60_RS49635 12424118 .. 12424134 -  -5.8  -3.16881   CATCCATCCCACGAA              GCAGCC GAGCT GACTGC              CGCCGGAGAGCCCTG  49 174
JRI60_RS49630 NONE
JRI60_RS49625 NONE
JRI60_RS49620 NONE
JRI60_RS49615 12421690 .. 12421704 -    -7  -2.70932   CGCCGTGGCGAAGGA               GGTGGG GCA CCCGCC               CGCGCAGGTGGCGCT  46 431
JRI60_RS49600 12418608 .. 12418620 -  -9.1  -3.36749   CAGCGCCAACAGCAA                GACCG CGA CGGTC                AGACGAAGTGCCATG  63 454
JRI60_RS49590 12416299 .. 12416322 -  -4.5  -3.54741   GAGGAGTTCTGGAAA          GCGCTCGTA GGTCCG CAGGAGCGC           GTCGAGGTGGGAGGG  52 420
JRI60_RS49575 NONE
JRI60_RS49570 NONE
JRI60_RS49565 12407790 .. 12407810 -  -9.6  -3.07816   GCTCCAGCGATGGAA            GGCCGGGC TCACC GCCCTGCC            GGCCCGCTCAAAGTG  57 33
JRI60_RS49520 NONE
JRI60_RS49515 12396851 .. 12396882 -  -2.8  -3.53012   CTCCGGGCCTTCAAA      CGGTGCCGCGGGGAC GTG GTGGCCACGGCGC-G      AGCGCTGCGCCTCGA  48 103
JRI60_RS49490 12392245 .. 12392272 - -15.7   -3.0792   CAACATCGGAGCCAA        CGAAGCCGTCA TGGACT TGACGGCTTCG         GAGCGAGCTCCAACA  77 6
JRI60_RS49485 12391564 .. 12391600 - -20.2  -3.00704   ACCCGCCAAACGATA    GCGCCCACGGCCAGCA AGACA TGCCGACCATGGGCGC    CGTTCACCGCGGCGT 100 53
JRI60_RS49480 NONE
JRI60_RS49475 12389245 .. 12389268 -  -6.6  -3.14463   AACTTCCTCCAGGAA          CAGGACGCGG AGCA CTGCGTCATG           ACATGGACCCCACCT  51 76
JRI60_RS49470 12388519 .. 12388572 -  -7.1   -3.0263   AGGAGCCGGCGAAGA GCGCCGC-GCTGGTGCCCGAGCCGCC ATC GCCGGCCCTGACACCGGCCGTGGAGA ATCGGAAGGTAAGGG  49 322
JRI60_RS49460 12385383 .. 12385424 - -16.5  -3.54424   CGCCAGGCGCTGAAA TGACGACGGCCCGCCGTGG GAAT CCACGACGGGCCGGTGTGA  GGTGAAGCCGTCCCC  86 46
JRI60_RS49450 NONE
JRI60_RS49445 NONE
JRI60_RS49440 12382620 .. 12382632 -  -4.7  -3.08798   ACGTGCCACTGAAGA                GGCTC ATG GCGCC                ACCTCCGCCCCGGGC  47 16
JRI60_RS49435 12380907 .. 12380920 -  -8.1  -2.62735   ACACGGGGGACAGCA               TGGCG TCTC CGCCA                CTCCTGGGATTGCCC  50 505
JRI60_RS49425 NONE
JRI60_RS49420 12379136 .. 12379150 -  -7.8  -2.58714   CGCCAGAGGAACGCA               CCCGAG CTG CTCGAG               CTGGAGCTCCTCTCA  48 322
         gnd NONE
         zwf 12373290 .. 12373313 - -10.2  -2.74012   CGAGCAGGGCAATGA          GCAGCCCCAT CACG AAGGGGCCGC           CCCACATGCTCGCCA  57 176
JRI60_RS49390 12372769 .. 12372780 -  -7.2  -2.52676   CATGGGCGGAACCTA                CCCC GACC GGGG                 AGGCCAGGTCTCGCG  47 44
JRI60_RS49385 12371797 .. 12371819 -  -6.8  -2.52516   CTGTTCATGATGAAC           GGAGCGACTG GCG CTGGCGCCCC           CCGCGTGCGGCATCC  47 189
JRI60_RS49380 12368258 .. 12368287 -  -6.3  -3.20991   CCCAAGGGAATGGAA       GATGCCGCGCGAG CCTT CTACCGCGACACC        CTCGGCATGACCGAG  51 347
JRI60_RS49365 12365318 .. 12365344 - -10.8  -2.90813   GAGTGCCGCAAACCA         CTCGGCGAGGAC ATC GTCCTCGTCCAG         CCCTACGAGCTGCCC  59 190
JRI60_RS49345 NONE
JRI60_RS49340 12358789 .. 12358807 -    -3  -3.16971   GCATCACACAGTCAA             CGGTGG CAGGGCT CCTCCG             TCAAGGTTGGGAGCA  44 130
JRI60_RS49335 NONE
JRI60_RS49330 NONE
JRI60_RS49325 NONE
JRI60_RS49320 12354561 .. 12354584 -    -3  -3.41051   CTACGGCGAGGAGAA          CGCC-GGCTTC TTC GAGGACTGGCG          CATCCAGCCGCTGCC  47 334
JRI60_RS49310 12353539 .. 12353551 -  -2.7   -3.6215   GCAAGGCAGCGGAAA                GATTC ATG AAATC                CCCCGCGCGGCGCTA  49 38
        gyrB 12350920 .. 12350963 - -13.7  -3.64609   GATAAGGACGGGAAA GGCACGTGGGCGCGGAGCC GAGACA GGCACCGGGCCCACTTGTC TTTTGGGGGTCTGGA  80 47
JRI60_RS49295 NONE
JRI60_RS49290 12345549 .. 12345566 -  -6.9  -2.71144   GAGGCGCCCGAATGA             CCCCCCA CATG TGGGCGG              AAGACCCTACATTTC  48 44
JRI60_RS49285 12344802 .. 12344836 - -17.8  -4.91852   CCCATCAAAAATAAA     GCCGGCCTGGAGCCCC AGA GGAGTTCCAGGCCGGA     CGGAGCCGGTGCAAC 100 55
JRI60_RS49280 NONE
JRI60_RS49275 12342450 .. 12342472 -  -3.2  -4.02817   CTGGGACAACAAGAA           CGTGAGCGAC ACC GTCCCGCCCG           CTCCGCAGGTGGTGA  61 454
JRI60_RS49240 12331333 .. 12331345 -  -4.7  -3.78934   GCCCGCCTACAAGAA                GGCCC ACC GGGGC                GAGGCCGTGGAGCTG  58 512
JRI60_RS49230 12328664 .. 12328702 -  -4.5  -3.28712   TCGGCTGGTCGACAA  CGGGGAGAGCTGGCAG GTAGGTGT CCGCC-GCCCTGCCCA   TCACGTTGGATGGGA  49 26
JRI60_RS49225 NONE
JRI60_RS49220 12327796 .. 12327820 - -13.6  -3.01712   CTCCGGCCCGGAAGA         GGC-ACCCCGG GTGT CCGGGGTCGCC          GCGCATGGAGACGCC  70 101
JRI60_RS49215 12326739 .. 12326771 - -19.9  -4.81551   GAGTCACATGAAAAA      GGCCCGGAGACCC GCCGTCA GGGTCCCCGGGCC      TTCGTCCATCCAGGA 100 44
JRI60_RS49205 12322791 .. 12322806 -  -6.8  -3.06183   CGGACCGCGAGCGAA              GC-CCGC TCA GCGGAGC              GTCATCCCCGACGTT  51 16
JRI60_RS49200 12318470 .. 12318483 -  -3.1  -3.08133   GACCGATTTACCGAA               CAG-GG TGA CCACTG               TGGGCCGCCTTGTAA  44 160
JRI60_RS49195 12318054 .. 12318082 -  -2.9  -2.94099   GTGCGGGAGGATACA        CGGAGCCGCGGAT TCC ATCCCCGGAACGG        GTGCCAGGCACCGGC  41 111
JRI60_RS49190 NONE
JRI60_RS49185 12314995 .. 12315011 -    -5  -3.14211   AGTGGCGCCCATCAA              CCCTCC GGGCA GGCGGG              CATTCCCGGGTGGAA  47 111
JRI60_RS49180 NONE
JRI60_RS49175 12311980 .. 12312011 -   -18  -3.32022   CTCCTGATACACGAA      GGCCCCCGCG-CCCG ACT CGGGACACGAGGGCC      TCACCACCACGGCAC  89 45
JRI60_RS49160 12309278 .. 12309290 -  -4.8  -3.06501   TACAGTCGCAGTCAA                CCTG CCGGC CAGG                GCTGCAGTGGCCGCA  45 9
JRI60_RS49135 NONE
JRI60_RS49130 12304674 .. 12304695 -  -4.3  -2.87344   TATGCGGCCCACAGA           CGTGATCGA ATGC TCGGTCCCG            CCGGGCGCTGGCTGC  44 159
JRI60_RS49100 12297286 .. 12297305 -  -2.1  -3.85698   GCGCTGCGCTAGAAA            GCACC GTACGCCCCT GGTGC             TGTCTCCAATTTGCC  54 56
JRI60_RS49090 NONE
JRI60_RS49085 12295942 .. 12295994 -    -9  -2.73483   ACGCCAGGGTAAGCA CCACGC--CCGCTGGAGTGGTCCCCG GGC CGGGGCCCGCTTCAGGGCCTGCGTGG CAAGTCCCAGGTGCT  55 113
JRI60_RS49080 12295693 .. 12295703 -  -8.2  -3.32963   ATCGCGAGCTGAGAA                 GCCG TCG CGGC                 TGTGCTCAGGCCGCC  58 31
JRI60_RS49070 12294375 .. 12294399 -  -5.5  -2.52543   ATCGGGGCGAACCCA          CTCACGCGCGG GAG CGGCCCGGGAG          GGGTGCGACGAGCGC  44 2
JRI60_RS49065 12293698 .. 12293720 -  -2.6  -3.36492   CCCCGAACCGCAGAA           CTCGAGCC GGCTATA GGCCGGAG           TTCTGGGGGAAATAC  46 229
JRI60_RS49050 12290276 .. 12290290 -  -2.7  -3.87952   CAAGAAGAAAACGAA               CCCCG ATCCA CGTGG               GACCAAAGCCCCGGC  56 90
JRI60_RS49045 12288691 .. 12288736 - -13.8  -3.07895   GCCAGCGCCAACAGA GCCAGGCCCCTGCCGCGCACC TCATG GGAGGGCGGCCTGGGCC-GGC GTGTACCCCAAGGGG  72 159
JRI60_RS48980 12272225 .. 12272238 -  -8.1  -3.67296   GAGGATCCACGGAAA               CCTCC GCGG GGAGG                CGCGGTTGCCGGGAA  63 383
JRI60_RS48975 12271475 .. 12271489 -  -2.7  -3.53811   GTGACGGGCCTCAAA               CCCGG CAAGT CCGGC               GCGTACACCCTGGAG  48 237
JRI60_RS48965 12268898 .. 12268955 - -10.6   -2.8547   ATTGGGTACACGACA CTTCGCCC-CCTTGCGCAT-CA-GGGCCC CAA GGTCCCCTGCAGGCCCAAGGAGGGCGAGG TGGAGATCAACGACG  61 118
        goxA NONE
        goxB 12265627 .. 12265644 -  -8.3  -2.70932   TGCCTCCTGCAATCA             TCGGGGC CAGG GCCCCGG              GTACATGACCCTCAA  52 37
JRI60_RS48950 12264730 .. 12264749 -  -4.2  -4.09685   CTCCAGCGTGGAAAA            TGCCCAAC GGCC GTGGGACA             CGGATTGCTACTGTT  61 33
JRI60_RS48945 12263339 .. 12263352 -  -3.7  -2.52543   ACTGCTCCGAAGCCA               GGCCC AACT GGGCG                TCCCAGCGCGAAGGC  40 115
JRI60_RS48940 NONE
JRI60_RS48935 NONE
JRI60_RS48930 12261437 .. 12261477 - -11.3  -3.29471   GGCGCACCAGACGAA GC-CGTATCGCGCCCGGGAG TTCT CTCC-GGACGCG-TACGTGC CACCGCCGCGGACGG  64 277
JRI60_RS48905 12255850 .. 12255864 -  -4.2  -2.54193   GAGCACGGCAAGGCA               CAGCAC GAG GTGCTT               CACGCGAGGCCTTCT  40 42
JRI60_RS48900 12255228 .. 12255241 -  -5.2  -2.82516   GCGGCCACGAGCAGA               CCCG GACTCA CGGG                CTCCCCCAGCCGACG  46 19
JRI60_RS48895 NONE
JRI60_RS48890 12252591 .. 12252611 -  -2.3  -2.87132   CGCCCGGGCGACACA            CCGCGGGTG CGT CCCGCCCGG            CTACCGCACCGCTGG  40 26
JRI60_RS48885 12251028 .. 12251042 -  -8.5  -3.35934   CTACACACTCCAGAA               GGCGG GCCCG CCGCC               GCGCGGGCCCCAGCA  60 51
JRI60_RS48865 NONE
JRI60_RS48860 NONE
JRI60_RS48855 12245071 .. 12245081 -  -8.2  -2.59431   GGGTGTGACAAGGGA                 GCCC AGC GGGC                 ATGACAGGCGCCAGG  52 119
JRI60_RS48850 NONE
JRI60_RS48845 NONE
JRI60_RS48840 12238687 .. 12238703 -  -3.6  -3.25823   CGGTGTTCATAGGAA              TCGCAG CTCCC CGGCGA              CCCCGACCGCGCGCC  47 0
JRI60_RS48835 NONE
JRI60_RS48830 12236514 .. 12236554 -  -2.9   -3.7941   CATGTCCGACAACAA  CGTCAGCGCGCATCCGGGC GAG GGCCGCGTGCTCGTCGTCG  ACGCGCGCCCCACGC  55 321
JRI60_RS48820 NONE
JRI60_RS48815 NONE
JRI60_RS48810 12231399 .. 12231411 -  -7.7  -3.46824   GCATCAACTAACTAA                TCCTG ATT CAGGA                ATCAAGCGGGGGGGG  59 50
JRI60_RS48805 12230372 .. 12230406 -  -2.8  -3.96068   GTAGTCGAAGAAGAA    GCGGAG-CGGGGC TCGGTTCATG GCCCCGACTCTAC     GCCGTCCGAACCCCC  58 22
JRI60_RS48800 12229456 .. 12229499 -  -7.2  -2.62616   CCAGCCCCCACACCA GCCCCACCCGCCAGGCCTTCC GGC GGATGCCCAGG-GAGAGAGGC GCCAGGCTCAGCAGG  47 262
JRI60_RS48795 12228910 .. 12228948 - -18.2  -2.69468   GACGGCCAGACATCA  CCCCGAGGGAGGCCCGG TCCACT CCG-GCCTTCCTCGGGG   AACCGGCTCGAGGGC  85 42
JRI60_RS48770 NONE
JRI60_RS48765 12213120 .. 12213132 -  -4.7  -3.79113   ACCCGTGCACAAGAA                CGGCC CCG GTCCG                GTTTGTTACCTCGCC  58 52
JRI60_RS48760 NONE
JRI60_RS48755 12210694 .. 12210710 -    -3  -3.02263   ACACGGCGCCGAACA             TCAGCGG CACG CC-CTGA              AACATGGAAGAAAGC  42 63
JRI60_RS48735 12204580 .. 12204599 -  -7.1  -3.25823   GGGCCGCTACATCAA            GGGC-CGC TAGGC GCGCGCCC            CCCTCACTGGATGGT  54 29
JRI60_RS48705 12197134 .. 12197159 -   -14  -2.73364   TTCCCAGGGGAAGGA         GAGGCCACGC TGGGGG GCGCGGCCTC          CGCCCATGTTTTCGG  69 80
JRI60_RS48700 12194992 .. 12195014 -  -5.4  -3.16191   CGAGACCTTCAGCAA           GGGTGGCAGC TAC ACGGGCACCC           TCAACTTCGGCGCCA  49 80
JRI60_RS48685 NONE
JRI60_RS48680 NONE
JRI60_RS48675 NONE
JRI60_RS48670 12187307 .. 12187336 -  -7.7  -3.15544   CGCCACCGCCATCAA       CCTGCCTCCCGAG CAGG CCCGGGACACGGG        CCAGCCGCGCGCCGT  54 276
JRI60_RS48640 NONE
JRI60_RS48635 12181499 .. 12181511 -  -9.1  -3.86897   GCCAGGGGGGACAAA                CGCGA TTA TCGCG                AGGACCCGCCGGAAG  71 104
JRI60_RS48630 NONE
JRI60_RS48625 12179528 .. 12179545 -  -2.7  -3.71848   GGGCGTGACGAAGAA             CGAGA TGGCCTTC TCTCG              CTCCAACGGCATGGA  51 183
JRI60_RS48615 NONE
JRI60_RS48610 12177005 .. 12177023 -    -8  -3.21276   TGCTCTTCGACAAGA             CGCTCGAC AGA GCCGTGCG             CGACTTCCTCCGCCG  54 134
        bioA 12172130 .. 12172149 -  -9.2  -3.01712   CGCCCCCGGCCAACA            CCGCCCGG ACTC CCGAGCAG             CTCTTCGCCAACCTG  54 278
JRI60_RS48575 12170866 .. 12170882 -  -4.3  -4.74706   GCGAATACGGAAAAA              TCGGACG GAA CGCCAGA              CCCTGGCTCTCAAAG  79 183
JRI60_RS48570 12169761 .. 12169775 -   -10  -3.14132   CGCCCGCCGCACCAA               CGAGAC TCC GTCTCG               GCCCGCCTTCACTTC  62 34
JRI60_RS48565 12168414 .. 12168439 -  -2.5  -2.87132   GCCGTGGCGGAGAGA         GGAACG-TCAGG CAG CCGGATCACTCC         GGGCTCCCGATATCC  40 19
JRI60_RS48560 NONE
JRI60_RS48555 12166385 .. 12166400 -  -3.2  -3.35679   GGTCTGCATCTACAA              CGCG GGGACGTA CGCG               ATGGCGGGGCTCCTG  47 460
JRI60_RS48540 12160212 .. 12160244 -  -5.3  -3.29144   CCACCTGCCGGAGAA      CCACCGCAGCGCCGC CGT GCTGCACCGCCTCGG      CTTCACCGTCGAGGG  51 91
JRI60_RS48530 NONE
JRI60_RS48525 NONE
JRI60_RS48520 NONE
JRI60_RS48515 12156776 .. 12156795 -  -4.9  -4.07885   GAGTGGGCCGGAAAA            GCTCAGG CGGCAT CCGGAGC             CCAGCGCTTGGGGCG  62 8
JRI60_RS48510 12156190 .. 12156212 - -15.6  -4.03167   CAACACCAACAACAA           CCCCTCTCCC TCC GGGAGAGGGA           CGGGGTGAGGGAACC  93 64
JRI60_RS48500 12150887 .. 12150905 -  -3.7  -3.53012   GGTGCCCGCGGCAAA             GCCCCCG GGTGT CAGGGCC             GCCAGGGCGAGTGGC  51 96
JRI60_RS48495 12150006 .. 12150035 -  -3.3  -3.09492   GCGCGAACCCTAACA       GCCAGCGGGCGCG CGCG CGCTCCCTCTCCC        CCTGGGAGAGGGCCG  44 51
JRI60_RS48490 12147873 .. 12147899 - -16.6  -3.82218   ATCCATAGGACCAAA         CACCCCTCTCCC TCT GGGAGAGGGACG         GGGTGAGGGTATCCA  91 65
JRI60_RS48475 12141575 .. 12141602 - -19.2  -2.77899   CTGCTGGACGAATGA        CCGTCCCCCTCC GCTC GGAGAGGGACGG         GGTGGGCGAAGCCCG  93 61
JRI60_RS48465 NONE
JRI60_RS48460 12137793 .. 12137846 -  -6.8  -2.64794   GGGAACTCGAGAGGA TGGATACCCTCACCCCGTCCCTCTCCC AGA GGGAGAGGG--GATGTGGGGGAATC-A GGGGCTCCCGGTCCC  47 23
JRI60_RS48455 12136903 .. 12136920 -  -3.3  -4.43844   CCACCACGGAGAAAA             GGCCCTCC CGA GG-GGTCC             CCCCGCATCGAATGG  69 179
JRI60_RS48450 12136307 .. 12136317 -  -4.6  -2.73994   ACCCGGGCAACACGA                 CGCC GTA AGCG                 CTGACGGAGGCCCGG  43 159
JRI60_RS48435 12132611 .. 12132646 -  -5.4  -2.79302   ACCACTCGGAGGACA    CGCGCAAGCTCATCCTC GAC GAGCACCAGCTCGCG-G    CCAGCCGTGGCGTGC  44 223
JRI60_RS48420 12129426 .. 12129451 -  -8.9  -3.34398   CTCCTGTGCGAAAGA         TGACGCGGCGC ATCA GCGCGGCTTCA          TGCCCTTGGCATCCA  58 12
JRI60_RS48415 NONE
JRI60_RS48410 NONE
JRI60_RS48405 NONE
JRI60_RS48400 NONE
JRI60_RS48395 NONE
JRI60_RS48390 12124070 .. 12124083 -  -5.2  -2.70932   CCCTCCCCCGAAGCA               GGGG GAGCGG CCCC                TAATACTTCGACCGG  45 25
        ileS 12121004 .. 12121014 -  -2.4  -4.15044   TCCTCTTCCAAGAAA                 TCCG CTT CGGC                 ACAGAAGTGACCACG  58 111
        lspA NONE
        lspA 12117765 .. 12117803 -  -2.3  -3.21416   GACGGGGAGCATGAA  CAGGAGACCT-TACGGGC GCGA GGCCGTGCAGGTTACCTG   TTCACGGCGAACTCT  42 98
JRI60_RS48355 NONE
JRI60_RS48350 NONE
JRI60_RS48345 12114749 .. 12114761 -  -9.1  -2.90496   GCGTGGCGCAAACTA                GGGAG CAC CTCCC                CACCGGACAACCTCC  56 114
JRI60_RS48340 12114205 .. 12114216 -  -3.6  -2.75064   GGCGTCACGGAAGCA                CGAG GCCG CCCG                 CCCGCTCTCCCGGGT  41 93
JRI60_RS48335 NONE
JRI60_RS48330 12112588 .. 12112618 -    -3  -3.30124   GGCGAGCCCCTACAA       CCCGACGTGGTACG CAC CGTGCGCCGCTGGG       AGCTGGGCCGCGCGG  47 359
JRI60_RS48320 NONE
JRI60_RS48315 12110732 .. 12110750 -    -3  -3.16177   ACCGCAGACATGGAA             CCTGCTGC TGC GCGACAAG             GAGACACGGGAGCAC  45 52
        hemL 12107055 .. 12107069 -  -2.1  -2.57013   GCCGAAGGGAATGGA              CTC-CG GGCG CGCGAG               CGCCTCTTGTTCAGG  38 36
JRI60_RS48295 12105586 .. 12105612 - -10.8  -2.74792   GGACGACGGCGAAAT         TCCCCGAGGGTG TAG CCCCCTCGGAAA         CAGCCCTCGCTAACG  60 103
JRI60_RS48290 NONE
JRI60_RS48285 NONE
JRI60_RS48280 NONE
JRI60_RS48275 12102787 .. 12102810 -    -6  -3.06696   TCGGCCTGGAAGAGA          GAGGAG-CTCA ACG CGAGCCTCCCC          CGGAAGCCTCGCGCG  49 9
JRI60_RS48270 12101033 .. 12101052 -  -2.8  -2.80344   CTGGGATGGAAGAAC            CTCAGG GTTGGCGT CCCGAG             CTGGACAGCGCCCGT  40 7
JRI60_RS48265 NONE
JRI60_RS48260 12098566 .. 12098618 - -10.6  -3.40403   CGTCGTGGACGACAA GGGC-AACGACTTCTTCGCGGACAT CAAC AAGCCCTCGAAGAAGTCGTGAGCGC CCCGGTGGTGGGGCT  68 40
JRI60_RS48250 12096383 .. 12096406 -  -8.1  -3.32769   CCGCGAAACCAGGAA          CGAGCAAGG CACCCC CCTCGCCCG           CCCTCAGCCCCGCCG  56 29
JRI60_RS48245 12095561 .. 12095572 -  -2.2  -3.30159   GCAACTGCTGGAGAA                GCTGC GCC GC-GC                GGGCGTGCGATTGAG  45 345
JRI60_RS48235 12091842 .. 12091857 -  -3.2  -3.64822   AGGTGTCGAGGCAAA              CATGCGC ATC GCGC-CG              CCAGTCTCGATCCGC  53 129
JRI60_RS48230 NONE
JRI60_RS48225 12089385 .. 12089416 -  -6.4  -2.52464   TCCCTGCCGAACGGA      CCGCGC-GAGGGGCG CTT CACCACCCAGAGCGG      CAAGGCCCACTTCAC  45 445
JRI60_RS48215 NONE
JRI60_RS48210 12084531 .. 12084543 -  -3.3  -2.79796   TCGGAGGCTACCAGA                CCCAC TCC GCGAG                TAGCCCCGGCTTCTC  40 71
JRI60_RS48205 NONE
JRI60_RS48200 NONE
JRI60_RS48195 NONE
JRI60_RS48185 12078437 .. 12078461 -  -2.6  -3.07113   CAGCAGCCTAGCCAA          CCTCGGGGCG GGTGT CGCCCCCTGC          CCGGCTCAGGGCTTG  41 31
JRI60_RS48180 12077871 .. 12077892 -  -2.9  -3.33261   CTTCAACGGGCACAA           CCCGATGCA CCAC TTCACCGAG            AGCGCGCTGGACTGG  45 176
JRI60_RS48170 NONE
JRI60_RS48150 NONE
JRI60_RS48135 12064562 .. 12064579 -  -4.7  -3.36273   GTGCCGGAACAGGAA             GCCCCCG CTGC CATGGGC              ACCTGGACCGAGGAC  51 149
JRI60_RS48125 12061754 .. 12061769 -  -3.2  -3.86897   CCGATGCTCCATAAA              GGATAC GGGC GAATCC               TACGATGGGATTCAG  56 37
JRI60_RS48120 12060481 .. 12060495 -  -4.2  -3.28712   GCTGCGTCTGGACAA               CAATCC GGC GGATGG               CCTGGTGGGCCGCCG  49 436
JRI60_RS48110 12059041 .. 12059058 -  -5.5  -2.80935   ACTTCACCGAGGAGA             CCCGC CGGACGGT GCGGG              ATTTGCCCTTGCGCC  44 202
JRI60_RS48095 12054279 .. 12054291 -  -6.2  -3.27022   CCCATTCCAGAGGAA                GGCC GGAGG GGCC                CCACCGCTCACCACG  53 287
JRI60_RS48085 12050960 .. 12050972 -  -5.5  -3.57144   GCGCGGATGCCGAAA                CATCC AGC GGACG                TACGCCGCCATCCAC  54 171
JRI60_RS48080 NONE
JRI60_RS48075 NONE
JRI60_RS48070 NONE
JRI60_RS48065 12048182 .. 12048197 -    -6  -3.44051   GCGCGAGCAGCACAA              CGGGCG GAGG CGCCCT               CAGAAACCGCACTCG  55 25
JRI60_RS48055 12044720 .. 12044737 -  -5.5  -3.01712   TCTGCTTTGCTAACA             CCGGC GTTGTGGT GCCGG              TGCTGCCGCCGGCGT  47 90
JRI60_RS48050 12044396 .. 12044423 -    -4   -3.6471   GCCGAAAGGACACAA        CCAGCCAGCAGG CAGA CCTACCCGCTGT         AGGCGTTCTCGATCG  54 70
JRI60_RS48025 12034376 .. 12034388 - -10.5  -3.25942   ATGCGCGCATACGAA                CCCGC GAG GCGGG                GCGCATCACCGGACC  63 295
JRI60_RS48015 12033499 .. 12033542 - -15.3  -2.78384   GCCCGCGGCATGACA GGCGGACCGGCACG-CGCTCC CCTT GGA-CGACGTGCCGGGCCGCG CATGAGCCCGCGAGG  75 41
JRI60_RS48010 12032808 .. 12032846 -  -8.1  -2.71731   CCGAGGGTCGAATGA  CCTG-GCGGAGCCCTCGA GACA TCCAGGGCTCCGGTCATG   CATGGGGAGGGCGAG  51 219
JRI60_RS48000 12031215 .. 12031225 -  -5.4  -3.61517   ACTGTTTTGGAACAA                 GTTC AAA GAAC                 TGCTCAGGAGCATGG  57 171
JRI60_RS47985 12028800 .. 12028825 - -10.3  -2.83271   GGAGCTGGACAAGGA         GCTCGCCCGGC GCTG GCAGGCCGAGC          CGGGCAACATGTCCT  57 212
JRI60_RS47970 12023703 .. 12023733 -  -6.1  -3.53091   AGCTCCGCGGCCAAA      GCGACGAGCCGAGC GGGC GCTCGTCT-GTCTC       GGCAGCCGCTCCATC  56 65
JRI60_RS47965 NONE
        hflX NONE
JRI60_RS47940 12017803 .. 12017814 -  -7.2  -3.28712   GCTTGGGGTGGATAA                GCCC TCCT GGGC                 GCTGCCAGCGCCCTA  55 71
JRI60_RS47930 12016207 .. 12016225 -  -4.5  -3.72576   GCCGCGGCGATGAAA             GCAGCAG CGTTC CTGTTGC             TCTTCGCGGGGATGG  55 151
JRI60_RS47895 NONE
JRI60_RS47890 12008738 .. 12008779 -  -2.8   -4.4009   CGCCACTCGAGAAAA CGCCTCAACGGCCGTCGGC GTCAT GCCGG-GGCTCTCGACGCG GCGGGGGCGGATGTC  66 4
JRI60_RS47885 12007278 .. 12007299 -  -3.5  -2.82516   CCCCCGAGTACCACA           CGCCGGTGA CACG CCGCAGGCG            GGGACTGTGTCAGTC  43 120
JRI60_RS47880 12005480 .. 12005494 -  -6.4  -3.07043   CCTACCAGGCCAACA               CCACGT ACC ACGTGA               GAATGCGCACGGACC  49 429
JRI60_RS47865 12001678 .. 12001698 -  -5.4  -3.45023   GGAGGAGTACGAGAA           CGGCACCTC CTTC GAGGC-CCG            GCTCGTGCGCCAGGT  53 261
JRI60_RS47835 11986262 .. 11986272 -  -8.2  -2.53581   GAGAGCTTGAACGGA                 CGCG ACA CGCG                 ATGCGCCGCTCTAAT  51 49
JRI60_RS47830 11985841 .. 11985884 - -12.4  -2.52464   TGCCCGGGGAACGGA TACCCTCACCCC-GTCCCTCT CCC AGAGGGAGAGGGGTGGGGGCT CAGCGCAGCTTCGGC  63 25
JRI60_RS47795 NONE
JRI60_RS47790 NONE
JRI60_RS47785 11975683 .. 11975723 -  -4.4  -3.65902   TCGACGTCAGTGAAA CCGTGCTCGGCCG-CGGCG CGCT CGCCCTCGGCCGCGCCCTC  GGGCCCCGCCGCCTT  55 335
JRI60_RS47750 NONE
JRI60_RS47745 11966422 .. 11966447 -  -6.7  -4.21194   GCTTAGCATTGAAAA         CGAGCGGGACG CAAC CGCCACGCTCC          CGGAGTGCTCCGATC  72 59
JRI60_RS47740 NONE
JRI60_RS47735 NONE
        atpB NONE
JRI60_RS47725 11964209 .. 11964219 -  -4.6  -3.41602   CCTACTCGACCAGAA                 CCCG AAT CAGG                 TCTTGATGGCGAGCA  51 21
        atpF 11963530 .. 11963549 -  -4.8  -3.57144   GCGCGGACCCGGAAA            TCCGGGTG GTTA CGCCCGGG             TCGTCGGCGAGCCCT  52 15
        ychF 11962090 .. 11962105 -  -6.1  -2.70932   CCGCGCTCGGAAGTA              TCCGG ACCAGG CCGGA               CGCTCTCGCAAGGCC  46 304
JRI60_RS47705 NONE
JRI60_RS47700 NONE
JRI60_RS47695 11953685 .. 11953706 -  -5.7  -4.64598   GAAGGACGTCAAAAA           GGGTGGCGA ACCA TCGCGGCCC            GATGCTTTTTTCCGA  77 87
JRI60_RS47690 11952742 .. 11952764 -    -4   -3.6849   AGGGAACTGCAAGAA           CAGACTCAGG GAC CCCGATCCCG           ATAGAATTCACCGAA  54 8
JRI60_RS47685 11950815 .. 11950829 -  -2.8  -3.14211   AGTGGTCGTCATCAA               TCGC ACCCTCA GCGA               CTTCATCGGAGGTCC  44 91
        cmr1 NONE
       cas10 NONE
JRI60_RS47670 NONE
        cmr4 NONE
JRI60_RS47660 NONE
        cmr6 11944133 .. 11944153 -  -2.4  -2.83255   AGAAGATCGATGACA            GGCGACGT CATGC ACGAAGCC            TCGTGAGGAGTTCTT  40 12
        cas6 11943323 .. 11943339 -  -2.9  -4.11216   GTGCCATCTCCAAAA              CGGTGAA GTG CTCAACG              CCTCTCGGCATCTCG  60 155
JRI60_RS47640 11942649 .. 11942677 - -10.1  -2.66316   CGGTGGAGGAGACGA        TGCGAGAGGCGGG ACA CCCACCGCCCGCG        GTGGACTTCGGGCTG  53 233
JRI60_RS47630 11940535 .. 11940583 -  -5.2  -3.21099   CTCGGTGACCATCAA CGCGAGCTACACGG-GCACGGC CAGCTGC GCCG-GCACCGCGTCGATCGTG GGCAGCTTCGCGGCC  49 127
JRI60_RS47620 11939182 .. 11939194 -  -9.1  -3.79906   CGACCGCTACAACAA                GCGCA TCC TGCGC                GAGGATCAGGCCGTG  67 245
JRI60_RS47610 11937245 .. 11937259 -  -5.6  -3.05844   CCCGCGACGGGAAGA               CGCTGC GCG GCAGGG               CGTTCGGCCGGACGG  47 369
JRI60_RS47600 11935594 .. 11935622 - -12.3  -3.91488   AACGCCGGGAAAGAA        CGCGGGGCAACGC ATT GCGTCTCACCGCG        ACCGATAGTGAACCT  82 55
JRI60_RS47595 11935034 .. 11935054 -    -4  -3.41051   CCAGCGCCAGGATAA           TGCGAA-GC GGGC GCGTCCGCA            GGACGACGTGGCGAG  49 74
JRI60_RS47590 11934147 .. 11934157 -  -3.2  -3.50853   GTCGCTCAAGGACAA                 CCTC AAG AAGG                 TCGTGAACAAGGTCG  50 296
JRI60_RS47575 11931237 .. 11931254 -  -6.9   -3.1739   GACACGAAGGGAAGA             CTGGCGC TCAT GCGCGAG              GCCATGCGGGGCTGG  51 374
JRI60_RS47565 11924633 .. 11924651 -  -6.6  -3.31144   CGCCGAGGCCCACAA             GCCCTCCA CCC CGGAGGCC             TCCGCTCCCGCGGCG  53 515
        mmsA 11919589 .. 11919614 -  -5.4  -3.03007   AACAGCGGGGGAAGA         CG-CGTCAGCT CATCC AGCTGCCGTCG         GTACGAGAGGTCCAC  47 4
JRI60_RS47540 NONE
JRI60_RS47535 11917059 .. 11917091 -  -2.6  -3.84027   CGAGTAAAAAGAAGA     CCCTCACCC-CAG CCCTCTCC CAGAGGGAGAGGG      GGCACTCTCAGAACA  54 33
         upp 11916191 .. 11916247 -  -6.5  -3.14564   GCAGCTCGCGACGAA CCCGGAGCAGCTCACGTCCCTCACTGG TGGCG CCAGCCAGGG-CTCGAGCC-CCCTGGG CGAGCTGTCGGGCCT  51 165
JRI60_RS47520 NONE
JRI60_RS47515 NONE
JRI60_RS47510 NONE
JRI60_RS47505 11911097 .. 11911122 -  -3.1  -3.91911   TGGAGTGGAAGGAAA         CG-GCTCCAGGC GAC GCCCGGTCCTCG         AGGGGAGGAGTTGAC  58 267
JRI60_RS47500 11909875 .. 11909903 - -13.1  -2.62263   AGGGCGCCGACACCA        GCGCGGCGGAG TAGTCAC CTCCGCCGCGA        GCCACCGGGGCGCCC  67 42
JRI60_RS47490 NONE
JRI60_RS47485 11905983 .. 11905995 -  -5.5  -3.53012   TCCCTGTCTTGGAAA                GATGG TCG CCACC                TGGGGCATCACCGTG  54 33
JRI60_RS47480 11904232 .. 11904262 -  -9.7  -3.40403   CCTGCTGGAGCAGAA      CCCCGACGTGGAGG CCAC CCTGCACG-CGGAG       GTGGACGCGGCGCTC  61 521
JRI60_RS47470 NONE
JRI60_RS47465 11902018 .. 11902053 - -12.4  -2.84687   CGAAGCACGAGCACA    CGCTCACGGTGCCCGC GGGC GCGAGCGCCCTGCGCG     TCACCACCAGCTGGG  65 325
JRI60_RS47435 NONE
JRI60_RS47430 11894935 .. 11894963 - -10.2  -3.05596   GAGTCGGGCAGGCAA        CGGCTCTACCTC GGGGA GAGGGTGAGCCG        CGTCGTCGACAGCGG  60 2
JRI60_RS47420 NONE
JRI60_RS47415 NONE
JRI60_RS47410 NONE
JRI60_RS47405 NONE
JRI60_RS47400 11886038 .. 11886063 -  -7.5  -2.74012   TGACGACGTGAACGA         CGCCGACCCGA GCCG TCAGGTGGACG          CCGAGCAGGACGAGG  49 76
JRI60_RS47380 11882577 .. 11882613 - -10.2  -3.53722   CGCATACCCATACAA    TCCTGGCGGCTATT TACAGACAG AACGGCCGCCAGGA    GCCTCCAATACTTGA  67 42
JRI60_RS47375 11881643 .. 11881667 -  -6.4  -3.71848   CTCGGGCACCAACAA          GCGGCTGAAG TACTT CTCCAACCAC          CACATGGAGGCCGAG  59 276
JRI60_RS47350 NONE
JRI60_RS47345 NONE
        nbaC NONE
JRI60_RS47335 NONE
        kynU NONE
JRI60_RS47325 NONE
JRI60_RS47320 11869249 .. 11869280 -  -7.2  -3.14931   CCGATCCCTCACGAA      GGGGATGCGGAATG AAAG CGTTCCGCATTCCG       TGCCGTCAACACGCC  52 79
JRI60_RS47315 11866205 .. 11866221 -  -3.5  -3.41051   GGAGGCCTACCAGAA              GCCGCGC ATC GCCCGGT              ACATGGAGGAGCGCG  47 349
JRI60_RS47295 11862176 .. 11862219 -  -8.1  -3.14132   TGCCCGTGCCACGAA GCTCGGGGACTCTGTCAGGCT CGTG AGCCTGCCGG-G-CACCGAGC ACTTCGAGGTCATCG  54 125
JRI60_RS47285 11859652 .. 11859665 -  -5.9  -3.12931   AGAACTGAACAGAGA               CGCGG GTGC CCGCA                GCAACCCATGTATGC  51 112
JRI60_RS47280 11858730 .. 11858788 - -14.8  -2.85847   AACGGGGAGAGGAGA CGCGGT-CCGGAAGGCGGGTCACGG CCATGCGCGAAC CCGTG-CCCGCCCTCCGGTACCGC- TGCGCTCCGGAATGC  73 385
JRI60_RS47275 11857624 .. 11857668 -    -7  -3.41527   GAAGCCCGAGCAGAA GCCCGCCACCA-GC-GAGGCGA TCT CCGCCGATGCATGGAGGCGAGC GATGATGGTGTGCCT  53 509
JRI60_RS47260 11854450 .. 11854460 -  -4.6  -3.28712   CTTCGGCCCCGACAA                 GGAC GTG GCCC                 GCTTCTGGCGCCGGC  49 399
JRI60_RS47250 11853026 .. 11853056 - -14.1  -2.62616   TGAGCCGGGAGATCA      TCGACGCGCA-CCG GGGG CGGCTGCGCATCGA       GAACCGCGAGGGCGG  65 327
JRI60_RS47235 11848474 .. 11848486 -  -2.6  -3.29144   CCAGCCGGTGGAGAA                GCAG CTGCC CCGC                CAGCCGGACGCGAAG  45 337
JRI60_RS47215 11845193 .. 11845211 -  -4.5  -3.57144   CTCCTCACGTCCAAA            GGC-GCCG CATC CGGCCACC             CGGCCCGGAACCGGA  52 155
JRI60_RS47210 11843645 .. 11843655 -  -4.6  -2.77899   GGGTCCCATGAAGCA                 CGGC ACC ACCG                 TCATCGCCTTCATCG  42 150
JRI60_RS47195 NONE
JRI60_RS47180 11836331 .. 11836343 -  -6.9  -3.17212   CTACCACCTGACCAA                CACGG ACC CCGCG                GTGCTCGCGCTGGAC  51 426
JRI60_RS47125 11823226 .. 11823241 -  -7.6  -3.40611   CGCATGGGAAGAATA              TAGGTC ATTT GACCTA               TTTCTTCAACCCCGG  59 23
JRI60_RS47120 NONE
JRI60_RS47115 11821071 .. 11821083 -  -3.3  -2.87132   GTGGCTGCTCATACA                GCGTG AGG CACTC                GAGAAGCTTCAGTCC  42 401
JRI60_RS47090 11816884 .. 11816895 -  -3.6  -3.72027   ATCTCTCAGCAACAA                GGCG GGAG CACC                 GGCACTGGCACGGGG  53 457
JRI60_RS47080 11816084 .. 11816095 -  -7.2  -2.84794   CCAACGTGAGAATCA                GCGC GTGA GCGC                 GGTGGCGATGACGTT  50 11
JRI60_RS47075 NONE
JRI60_RS47070 NONE
JRI60_RS47065 11813464 .. 11813500 -  -5.8  -2.51815   CGGAATCAGGAACAG   GAGCGCCAGGACG-AGG AACT CGTACGTCATGGAGCTC    TCAGCTTGCCGCCAG  44 26
JRI60_RS47060 11812383 .. 11812393 -  -6.8  -2.72344   CGGCACCGCCAACCA                 CGAG GCC CTCG                 CGGGCTGGCTGGGCA  46 427
JRI60_RS47050 11810336 .. 11810365 -  -2.1   -4.2528   GTCCAAGTGAACAAA       GCCGAGTACTGGGA CAC TCCCAACAGCCG-C       ATGGTGCAGCTGGTG  64 185
JRI60_RS47040 11809269 .. 11809286 -  -5.5  -3.09516   GCGCGGAGGAGCTAA             CAACCCA GGTG CGGGTCG              TACCGGGGCGCGAGC  49 4
JRI60_RS47010 11802133 .. 11802157 -  -6.9  -3.41229   ACACCTCGAGGACAA          CCTGCGCGCGG GCA CCGGGCGCCTG          CCCGACACGAAGACC  53 85
JRI60_RS47000 11799851 .. 11799876 -  -3.1  -4.13767   GGGCTCAGCGGAAAA         GGAGCGCGTCCG ACA CGGG-GCACACC         TACCCCACACCCACC  59 204
JRI60_RS46995 11798312 .. 11798331 -  -9.2  -2.89191   TCATATTGGGATACA            CCGAGGCC ACGA AGCCCCGG             CGCACACGGTTGACT  56 505
JRI60_RS46985 NONE
JRI60_RS46980 11795814 .. 11795836 -  -3.3  -3.84185   GCCAGGGAAATAGAA          CGGAG-GCGG ATAC CCTCACCCCG           ACCCTCTCCCAGAGG  56 69
JRI60_RS46970 11793949 .. 11793986 -  -9.9  -3.02144   CCACCGGCTCCAACA  CCGAG-AGCCGCGCTCC CGTATC GG-GCGGGGCTGCTCGG   GCCGACAGCGACACC  60 221
JRI60_RS46960 11791920 .. 11791932 -  -6.2  -2.95298   CGCACGCAGGAGATA                GCGG CGCAC CCGC                GGGTGAGTGACGTGT  48 247
JRI60_RS46950 11790554 .. 11790582 -   -16  -3.53012   CCGGGCCCGTCGAAA        GGGGGAAGGCCC GGATG GAGCCCTCCCCC        CTCACGCGTGCTTCA  83 38
JRI60_RS46925 11783439 .. 11783453 -  -3.4   -3.4574   CTCAGGAGCAAAAAC               CCCTGG ACA CCCGGA               CTACGTCGTTTCCAT  48 26
JRI60_RS46920 11781446 .. 11781482 -    -5  -3.64703   CGCGGGCCAGGGAAA    GGCGAGCAGCGTTCCC ATGGA GGAAGCGCTGCTCAAG    GCGGCGCGGCTGGCG  55 56
JRI60_RS46890 11775895 .. 11775909 -  -7.1  -3.61398   TGCCCTTCCTAATAA               GGAGG CGGGC CCTCC               CATGTCCCCCCCCTG  58 4
JRI60_RS46885 11775586 .. 11775596 -  -6.8  -4.30719   CGGGGTCAGAAGAAA                 CCCA GCC TGGG                 TCAGCCACGCACCTG  75 26
JRI60_RS46880 11773740 .. 11773750 -  -2.4  -3.61089   CTCGAAGAAGCAGAA                 GCAG GCC CAGC                 AGCAGCCCCCGGCCA  51 457
JRI60_RS46865 NONE
JRI60_RS46860 11772342 .. 11772373 -  -9.4  -3.15544   CCTCACCTCGATGAA      CGCCAACGACGAGC TCAA GTTCGTCATCGGCA       GCCGCGAGGACTACG  59 246
JRI60_RS46845 11770325 .. 11770368 -  -2.3  -3.26471   CTACTTCGACAGGAA CGCCGGCGAG-CT-CACGCGC ATCC GCTCGTGGATCCTCGCTGGTG CGGCGAACGACTGAT  44 77
JRI60_RS46835 NONE
JRI60_RS46830 11765177 .. 11765188 -  -3.6  -2.99162   AAAATTGGAAATAAC                GGCC ATCC GACC                 CGGGGCTCGGGGGGC  44 53
JRI60_RS46825 11762416 .. 11762446 -    -8  -3.15544   CGTCACCCTGAGCAA       GGCCTCGGAGGAGG TGG CCGCCGCCGTGCCC       GCGCACCTGGCCTCC  54 323
JRI60_RS46810 11757450 .. 11757474 - -15.7  -3.56092   TGATGACTTGGGAAA          CCCGGGCGG CGCACTC CCGCCCGGG          TTTGGACCGCGGGAC  83 40
JRI60_RS46805 NONE
JRI60_RS46800 NONE
JRI60_RS46795 NONE
JRI60_RS46790 11749514 .. 11749547 -  -2.4  -2.98823   TCCGCGCGATACATA    CCGACGCACCTCC-GC TCCT GCTGGAGGT-CTTCCG     ATACGTCCTCCGGTG  41 94
JRI60_RS46785 NONE
JRI60_RS46780 11746731 .. 11746744 -  -2.3  -3.31144   CGTTCAGGTGCACAA               CGAGG GCCC CCCCA                TTCCGGCGGACCTGC  45 275
JRI60_RS46770 11742487 .. 11742510 -  -2.4  -4.41548   TGAGACTCTATAAAA          TCCCAATGAAC TTC GTCC-CCGGGA          GAGGACCATGACAGA  65 516
JRI60_RS46740 11735766 .. 11735779 -  -4.5  -2.51547   GTCGGAGATGAACAC               GAAGG CTCT CCCTC                TAATGAGACTAGGCG  42 57
JRI60_RS46735 NONE
JRI60_RS46730 11730757 .. 11730793 -  -3.5  -3.56568   GAAGTACCCCCGAAA    TGGCTCCGCCCTCCA TTCCCCC CGGAGGACGGGGCGC    CAGTGTGGCACACGC  51 78
JRI60_RS46725 11729354 .. 11729375 -  -7.9  -2.73681   CATGCAGCTCAACCA           GGAGGTGCC CAAG AGCCCCTCC            CTCGTCATGCTCACG  49 250
JRI60_RS46710 NONE
JRI60_RS46705 NONE
JRI60_RS46700 11722938 .. 11722974 -    -5  -3.48276   GTTCCGCGGAGACAA   GCCCCCGCGCATCCGCG TGTC CGCC-ACGCGCCAGGAC    GACACCGTCACCGTC  51 258
JRI60_RS46690 11719930 .. 11719943 -  -3.7  -3.27498   CAGATTGGAGACCAA               GCACG GAGC CGGGC                GGCGGGGCCTCAGCC  47 35
JRI60_RS46685 11717630 .. 11717641 -  -5.8  -3.07443   GGAGACCCCACCGAA                CTGG CCGG CCAG                 GGCTGGCTGCAGGTG  47 260
JRI60_RS46670 NONE
JRI60_RS46665 NONE
JRI60_RS46660 11712185 .. 11712198 -  -2.3  -3.53012   TGCCTCGCTTTGAAA               CGAGG CATC CCCCA                TTTTTTTTCACGGGC  48 33
JRI60_RS46650 11706789 .. 11706809 -  -3.9  -3.90112   GCTCCTCCAAGGAAA            GCGGCTC CGACGGC GAGGCGC            ATCACTCGCCTGCAC  59 122
JRI60_RS46645 NONE
JRI60_RS46635 11703211 .. 11703244 -  -9.3  -2.71144   CAGGGGGGGTAAGGA     GCGCGCTCGCCCGGG ACTC CCCGGCCGCGATCGC      GTGCCCATTCCCTGA  55 292
JRI60_RS46630 11702291 .. 11702340 - -15.2  -3.09193   ATCACATTCATTGAA GGACCAAGGAAG--CGCCCTTCCA AGGA TGGAAGGGTGGGCTTCCCTGGCCC GGACATCACTGGCGA  76 60
JRI60_RS46625 11701003 .. 11701052 - -20.7   -3.2699   AGCAGATGTAGAAGA CGAGGCCGGAGACGCCCCACCTC CCGA GAGGTGTTGCATCCCCGGCCCCA GTGTCAGCTCAGACG 100 51
JRI60_RS46595 11696170 .. 11696200 - -22.7  -5.18371   GTTGAGAAAAGAAAA       CGCGGTGTCGGGA GCAGA TCCCGACACCGCG       TGTCCATCCAGGTCC 100 87
        treZ 11692924 .. 11692934 -  -2.4  -3.68936   CAGTAACGGCAACAA                 CGTC AAC GTCG                 GTATCAACCTGGGCG  51 81
JRI60_RS46575 11690546 .. 11690578 - -24.9  -5.24129   GCTCCGCACAAAAAA      GCGGGCGCGGGGAGT CAC ACTCCCCGCGCCCGG      TGCTTCACCCGCCGT 100 55
JRI60_RS46570 11688707 .. 11688751 -  -6.3   -4.2704   CGGATGAGGAAGAAA CGCTCGAGAGCTTCCATACGG CGC CCATATAGACGTCCGCGAGCC CCCGCCCCAACCTTT  70 40
JRI60_RS46565 NONE
JRI60_RS46560 11686730 .. 11686771 -  -4.2  -3.14344   CATCGTCCTGACGAA TCGCGCCGGCG-GGGAGCC GTGGA GGCTCGCGCAGCGGCTCGC GGACCACTGGCTCGG  47 92
JRI60_RS46535 11681491 .. 11681506 -  -6.8  -3.21276   TTCCGCGTGAGAACA              GCC-CGC ACC GCGTGGC              ACGTCCTCGGAGTCC  52 71
        ettA 11679377 .. 11679393 -  -5.1  -2.91264   TGCGCGAGGGAGAGA              CGGGA TGGCTGC TCCCG              CCAGGGGATGTGGCC  46 303
JRI60_RS46515 11674944 .. 11674964 -  -3.8  -3.16191   TGAGATGTGGATGAA            CTCGGTGC TGGAC GCGCCGGG            ATACGCCGAGGCGCT  45 153
JRI60_RS46500 NONE
JRI60_RS46495 NONE
JRI60_RS46490 11669221 .. 11669258 - -17.7  -2.88544   TTGCACCCGGAGAGA   CGCGCGACCCGGAG-GGC ACC GCCTCTCCGGGTGTCGCG   CCGCCGCGGGCGGGG  80 419
JRI60_RS46475 NONE
JRI60_RS46470 NONE
JRI60_RS46465 11663608 .. 11663632 -  -8.5  -2.70932   CGCCTCGGCGAAGCA          GGGGAATGCGA ACA TCGCCTTCCGC          ATCGAGCGCCGTGGC  51 445
JRI60_RS46445 11654580 .. 11654607 -  -5.4  -3.61398   GCTCGTGCTGAAGAA        GGAGACGGACAC GGCG GCGGCCATCGCC         GGCAACCGGGTGAAG  57 283
JRI60_RS46435 11652833 .. 11652861 -  -2.9  -2.67171   GACCGGATGAAACAC        CTGGGGCCGCGAG TCT CTTCCCGCCCCAT        CCGCCGGGCTTCAGC  39 36
JRI60_RS46430 11651297 .. 11651325 -  -6.5  -2.54896   GCCGGATGGAACCCA        CGCCGGGAGAAGG CCC CCCTCACCCCGCC        CGCTTCTTCGGGCTC  46 16
JRI60_RS46425 11650157 .. 11650196 -  -5.6  -3.40403   CGTTCTCGAGGAGAA  CGCTTTCGGGCTGGGGCTC GTG GAGCGC-ATCCAGAAGGCG  GTCCACGGCGTGGGG  51 273
JRI60_RS46415 NONE
JRI60_RS46410 11645246 .. 11645277 -  -7.3  -4.48987   TCCCCACAATCAAAA      CTGACACACCGTCC CTCAC GGACAG-GTGTCCG      GACAGGTGTCCGGGG  77 74
JRI60_RS46390 11637990 .. 11638013 - -13.2  -3.36273   GTTCCTCAACATCAA          GACG-GTGCGC ATG GCGCACGCGTC          CTCGCTCCCGGACCG  70 55
JRI60_RS46380 11634753 .. 11634780 -   -22  -5.60993   CGGGCCATAAAAAAA        CCGGGCCCCGCG AATC CGCGAGGCCCGG         CGGGAGGGCGACAGG 100 54
JRI60_RS46375 11633803 .. 11633831 -    -3   -3.8512   CATCTACGACAACAA       CTAC-GCGCGCCT GCAC AAGCGCGCCGATG        ACATCGCGCCCTTCC  56 139
JRI60_RS46365 11632365 .. 11632381 -  -7.9  -3.40403   CTGGGTGGAGGACAA              CCACCCC AAG GGCGTGG              CCTTCTGCGTGCGGC  55 76
JRI60_RS46345 11628805 .. 11628836 -  -2.8  -2.67747   CTGGTACACCATAAC      CGCGCTCCTTTCCCC CGG GGAGGACGGC-CGCG      AGGAGACGGCTTCCC  40 208
JRI60_RS46340 11627540 .. 11627574 - -12.9    -3.002   ACGAGTGCACACACA    CCTC-CAACAAGGGCC GGAT GGCCCCTGCCGAGAGG     TATACGACCGCGCGG  70 68
JRI60_RS46335 11625395 .. 11625427 -  -2.7  -3.68222   CCGCAAGTGCAACAA     GCTCTGC-G-AGGCG GACGG CACCTGCGGCTGAGC     GCCACGCCCCGGCGC  53 45
JRI60_RS46320 11622260 .. 11622280 -  -3.2  -2.72049   GAGACGCTGGAAGCA           CGT-CTGCG CGAG CGCTGGACG            GTGACGCCCTTCGTC  40 55
JRI60_RS46295 11617609 .. 11617643 - -12.9  -3.31248   TAACATCCCGGACAA    CCCGGAGACGCGGAGTG CTT CAC-CCGCGCC-CCAGG    CGCCGCGCCTTGCCC  73 10
JRI60_RS46290 11616102 .. 11616125 - -10.3  -3.13403   GCCCGGTGAGGAACA          CGAGGGTGA CGACCC TCACCCCCG           CCCTCTCCCAGAGGG  62 108
JRI60_RS46275 NONE
JRI60_RS46270 11611387 .. 11611400 -  -2.3  -3.63627   GCTCGAGAGCGGAAA               GGTGG ACGT CAACC                GGCCTGCTGCGCACC  51 20
JRI60_RS46265 11610234 .. 11610263 - -13.6  -3.26813   ACCAGACACGACGAA       GCCCGCC-AGGTC TCATG GACCCAGGCGGGC       TTTCAAGGGCACGGC  73 60
JRI60_RS46260 NONE
JRI60_RS46255 11608045 .. 11608088 - -10.2  -3.08679   TTCCTCGAGGGAAGA CCCTCACCCCAGCCCTCTCCC AGA GGGAGAGGGG-GCGACGACGG CTAGACCGGGGCTCC  62 26
JRI60_RS46250 11607408 .. 11607419 -  -5.8  -2.69151   CTGCGCGACACACCA                GTCC CCAG GGAC                 CTCAGGGGTTGAGGC  45 27
JRI60_RS46245 NONE
JRI60_RS46240 11602638 .. 11602649 -  -5.8  -3.57144   CCTCTCATCGTCAAA                GGCT AACC AGCC                 CCTCTGACACGCTCA  54 212
JRI60_RS46235 NONE
JRI60_RS46230 11601533 .. 11601550 -  -6.2  -3.32844   CGGGGTACTTCAGAA             GGGCAG CGAGGC CCGCCC              GTCCCGGTGGTCCCG  53 2
JRI60_RS46220 11599907 .. 11599944 - -15.5  -3.06162   GACCCTATCGGAACA   GGGCGGGCCCG-GGACTC CGG GTGCCCTCAGGCCCACCC   GCGCCGCGCGTCAGC  77 14
JRI60_RS46210 NONE
JRI60_RS46205 11596488 .. 11596508 - -11.9  -3.35813   CGCGAGTTCAAGCAA            CTGGTCCGA TGG TCAGACCAG            TTCGAGCAGCGCGCG  70 265
JRI60_RS46185 11592178 .. 11592210 -  -3.4  -2.69151   CCGGTGGAGATAGGA     CAGGAGCTGCGAGC GGCACTG GC-CGCGGC-CCTG     GGGCTCACGCCGGGC  39 474
JRI60_RS46175 NONE
JRI60_RS46170 11588516 .. 11588549 -  -9.6  -3.18681   GTCCAACGCCATCAA     GTACAGCCCGACGG GAGGAA CCATCGAGGTGTAC      ACCCGGGTGCAGCCG  59 397
JRI60_RS46160 NONE
JRI60_RS46155 11580437 .. 11580477 - -24.8   -4.7497   CTGAGCCACGAAAAA GGCCGGGCCCCGCCTCCCC GGTG AGGGAGG-AGGGCCCGGCC  CGAATCACGACACGG 100 49
JRI60_RS46140 11576923 .. 11576939 -  -5.8   -2.7728   CGGAAACGGGAAGGA              GAGGAC GTCAT GCCCTC              TCCTTTTAACACCGA  45 66
JRI60_RS46135 11576066 .. 11576089 -  -3.8  -3.37959   CAACTCGAAGAGGAA          GGGCAG-GAAC ATG GCTCGCTCCCC          GTCAGGCCTTCGTCC  49 27
JRI60_RS46130 11574821 .. 11574855 -  -9.2  -2.52464   CGCCCCCCGAACGCA     TGGCAATCCAGAGGCG CCC CGCTCCTCGATTGCCC     AGGACACATCACTTC  54 39
JRI60_RS46125 11574278 .. 11574303 -   -19  -2.60496   CTCCTTCTGAAACAC         CGCGGCCCCG TCGGAG CGGGGCCGCG          CCCCGGCCCGCGCTC  87 39
JRI60_RS46070 NONE
JRI60_RS46065 11564729 .. 11564747 -  -7.3  -3.47403   GGAAGCCAGAAGTAA             CCCTCGC ACCCG GCGTGGG             CGGGATGAGCCGGAG  56 68
JRI60_RS46055 11561360 .. 11561385 -  -4.5  -3.32343   CGCAGAGGTCCACAA         GGCGCCGTAGC TCAC GCGAGGGGGCC          GGGGAGCGGGACGAC  49 76
JRI60_RS46035 11556986 .. 11557004 -  -3.7  -3.27022   GGGAGTGGACACGAA             GGGGCCG GGACT CTACCCC             CGGACAGGAGTCCTG  47 73
JRI60_RS46030 11555067 .. 11555094 -  -9.1  -3.21099   GGTGGGGATGATCAA        CCGCTCGCTGC GCTGGG ACAGCCAGCGG         CTGGTGGACACGCAC  56 315
JRI60_RS46015 11551432 .. 11551453 -  -4.3  -2.83894   AGGAGCAGGAGGACA           GAGCCAGAC GGAT GTCCGTCCC            CATGCACGAAGGGCC  44 172
JRI60_RS46010 NONE
JRI60_RS46005 11549053 .. 11549073 -  -5.3  -2.78596   CACGTCTCGATGACA            CCTCGGG ACGGGCA CCCGTGG            AAGCGAGCAAGGCCC  44 287
JRI60_RS45995 11547897 .. 11547928 - -10.8  -3.44051   GCGCGAGGAGTACAA      GGGGCCCGTCG-AGG TGG CCTACGACGGGCTCA      CCGTGGAGCTGCCCC  66 71
JRI60_RS45985 11546139 .. 11546179 -  -8.9  -3.22298   CGGACGCATTACTAA  CCCGCCGGTCAGAAACCGC CAG GGGGTTTCTGAATCACGGG  TCAGTAACCGCCCGA  58 89
JRI60_RS45980 11545302 .. 11545326 -  -4.2  -3.39327   GCCGGAGAGGGACAA          CGCGGTGG CGGCCATGC CCACGGCG          GCGAGCCCGGCGACG  49 68
JRI60_RS45975 NONE
JRI60_RS45970 NONE
JRI60_RS45965 NONE
JRI60_RS45960 11539038 .. 11539050 -  -4.8  -3.92522   TGGTAACGGGAGAAA                GCTC CAAGC GAGC                CTGACCCCTCTCCCT  61 93
JRI60_RS45940 11536586 .. 11536622 - -20.2  -2.87132   CCCCCTCGGGACACA   CG-AGCGGCGGGGAGCC TCCG GGCTTCCCGCCGCTTCG    CTTTTGGGGAGGCCT 100 53
JRI60_RS45920 11530978 .. 11531006 - -10.9   -3.9122   CACCGGGTGAAACAA        TCTCCCCTCTCCC TTC GGGAGAGGGACGG        GGTGAGGGTATCGCG  79 73
JRI60_RS45915 NONE
JRI60_RS45910 11527373 .. 11527385 - -10.5  -3.49568   GCATCTACAAGAAGA                GCCGG CTG CCGGC                GGCGAGCGCCCGCTA  67 48
JRI60_RS45870 NONE
JRI60_RS45865 NONE
JRI60_RS45860 11515070 .. 11515083 -  -8.1  -2.57931   GCCAGCCGTGAGAAG               TCCCG CCTA CGGGA                ACACCACGCCGCGCA  50 18
JRI60_RS45850 11513114 .. 11513131 -  -3.3  -3.14878   TCGTGCAATGGAAGA             GGAGCCT TTCC ATGCCCC              GGTACTGTCCGCCAG  44 116
JRI60_RS45845 11512312 .. 11512347 - -16.1  -3.07307   GAAAGCGCCAGTCAA    GGACCGGGGCGGAGT GGGAAG ACCCCGCTCCGGCCC     TGGGGACTACGCGTG  79 32
JRI60_RS45815 11501337 .. 11501355 -  -4.4  -2.91912   CCATTCAGGGAGACA             GCGTCTGG GGG CCGGACGA             TAGCCGATCCGCGTG  44 54
JRI60_RS45810 11499938 .. 11499957 -  -4.2   -4.3739   GACGTTGCGAGAAAA            GCTGCGAGT CTG ACGCGC-GC            CCCACCCCACCCCAT  68 117
JRI60_RS45790 NONE
JRI60_RS45775 11493960 .. 11493995 -  -5.3   -2.6627   CGAAGTCACTATAAC   GCAGGCGAGAGGTCCGG CAAT CCGGGCC-CGC-CCCGC    TGAGCGGGGCGGGCC  44 68
        dnaJ 11492687 .. 11492744 -  -4.9  -3.53012   GCGGCTCTGCGCAAA GGCTG-GAGCAT-TCGGGCCACGAGGCT AACAG AACC-CGTGGCCCGTCACACCCTCACCC CGTCCCTCTCCCAGA  52 50
JRI60_RS45765 NONE
JRI60_RS45760 11490506 .. 11490528 -  -3.3  -3.78934   CCGCGCTGACAAGAA           GGAGGGGGA AGGAG TCCCGCTCA           CTTCCTATTGTTGGA  56 23
JRI60_RS45755 11488555 .. 11488580 -  -7.5  -4.57569   CCAGTTGGTGAAAAA         CGCGCCCGGGAG GCG CTCC-GGTCACG         GCAACTTCCGGGAGC  81 48
JRI60_RS45725 11477257 .. 11477306 - -15.8  -4.07885   GACTCCTCCTCAAAA GAGTGAGGGAGGGCGCCGCGTTCC AGGC GGAACGCCGT-CCCTCCCCC-CTC AGGTGACTCAATTTC  93 349
JRI60_RS45720 NONE
JRI60_RS45715 11474297 .. 11474325 -    -3  -2.71712   GGCTCGCCTCGAAAG       CCGAGCGTCGCGT CTCC ACTCATCGC-CGG        GACAGACGTGCGAGC  40 16
JRI60_RS45710 11472798 .. 11472808 -  -6.8  -2.73364   CGCGGATGCGAAGGA                 CCTC ACC GAGG                 TCTTCTGGTCCGCCC  46 436
JRI60_RS45695 NONE
JRI60_RS45690 11467798 .. 11467811 -  -8.1  -2.52464   TTCCTCCTCAAGGGA               GGCAG CCCG CTGCC                GGACGCCCTCGTGCG  48 479
JRI60_RS45680 11466717 .. 11466742 - -14.7  -3.17075   TGCGCCGCAAGTGAA         GCGGGCCCGGCC CCT GGCCAGGCCC-C         TTCGCCTCCTCAGCG  76 35
         ung 11455007 .. 11455017 -  -4.6  -3.41051   CTACGGCTACGACAA                 CGCC CAG GACG                 TGTTCGTGATGATGA  49 286
JRI60_RS45630 NONE
JRI60_RS45625 11452480 .. 11452496 -  -5.8  -2.84801   TAGGCGGAAAGAGGA              GCCAGA AGTCG CCTGGC              TGGGGGGCATCGGAC  46 66
        gyrA 11449462 .. 11449510 -   -16  -3.53012   GGGTCTCGTTCGAAA CGCGAAGAGGGCCGGAG-GAGGG AAAT CCCTCACCCCAGCCCTCTCCCAG GGGGAGAGGGGGTTT  83 110
JRI60_RS45615 11447612 .. 11447631 -  -3.5  -2.56596   TCTCCTACGAATGGA            GGCCG ATTTCCATTG CGGCC             CCTCCACCGTAGGCG  40 83
JRI60_RS45610 11447262 .. 11447310 -  -5.2  -2.63073   GGGTCCGAAGAAGAG CCGCCCCCTCCACGTACGGCTCAC GGG GTCAGCGGT-CGCGCAGTGG-CGG AGTGCCCGTCCGAGC  44 5
JRI60_RS45605 NONE
JRI60_RS45600 NONE
JRI60_RS45595 11445537 .. 11445567 -  -3.9  -3.53563   AGACTCCGGCGGAAA      GC-CCTGCCGGTAA CGCA TCCCCGGGAGGAGC       ACAAGCCACCCACGT  51 77
JRI60_RS45590 11443963 .. 11444007 -  -2.8  -4.09685   CGCCATCGCCGAAAA GCCAAGCACCAC-CGCCAGCGT CCA ACCCTGGCGCGTCCT-CATGGC AGCTTCACCACCACG  59 19
JRI60_RS45585 11442501 .. 11442523 -  -3.2  -4.14739   CCACGGATTGGAAAA           CGGGGACAGG CAC CCTCACCCTG           ACCCTCTCCCGGAGG  59 64
JRI60_RS45570 11437992 .. 11438021 -  -2.1  -3.53811   GCCAGCTCGCTCAAA       CCACCCTGCGCG CCATCCT CGGACA-GGTGG       AGCTGGATCAGCTCC  48 424
JRI60_RS45550 NONE
JRI60_RS45545 11432061 .. 11432073 -  -5.5  -2.70932   CCGCTCCTTCAACCA                CCTGC TCG GCAAG                TGCGGCGTCTCCTTC  44 469
JRI60_RS45535 11431252 .. 11431297 - -19.2  -2.70354   CGCGCTACAAATGGA CTCCCT-GGACTCCGTGGACT GACTA AGTCCTCGAAGTCCGAGGGAG TTGATGTGCCCAGGG  93 30
JRI60_RS45530 NONE
JRI60_RS45525 NONE
JRI60_RS45520 11428165 .. 11428186 - -12.3  -2.71144   GAGTCTGGTGAAGGA           CCGGCCGCAG AAG CTGCG-CCGG           GTCGCCCAGCGCTGA  65 60
JRI60_RS45500 11422631 .. 11422645 -  -3.4  -2.53876   CCCTATGCGAAGGCA               CCCCTC AAC GGGAGG               AATTTCGGGATATTC  39 61
JRI60_RS45495 NONE
JRI60_RS45490 11419693 .. 11419739 - -15.1  -3.59979   TTCCCGGATGTCAAA CGACTCCCAGTGCGTCCCCGTC AGCC GACAGGGACGC-CTTGGGGACG CGAGCGCTCGCGGGT  81 43
JRI60_RS45485 11418707 .. 11418759 - -12.6  -2.64218   AGGCGCTACCAGAAG TGCATGGCCCGCTACGCCGCCCTGC CGAA GTAGCG-GGGGTGGCGGGCCATGCG GCGCCCTCAGCGGCT  64 40
JRI60_RS45475 11415119 .. 11415159 - -12.5  -4.25104   CGGCGCTGAGGAAAA  GACGACGGGCGGTCCCCCC ATG AAAAGGACCGCCCGCCATT  CAACCCATCCTGTAC  91 48
JRI60_RS45450 NONE
JRI60_RS45445 11408569 .. 11408579 -  -3.2  -3.36785   TCACAGGGGAAGCAA                 CTGC GAG GCAA                 GTCCATCCCGGGCAT  47 369
JRI60_RS45430 NONE
JRI60_RS45425 NONE
JRI60_RS45420 11401947 .. 11401962 -    -4  -3.12351   GGGCGGGAGAGCGAA              GGGT-AG ACC CTCACCC              TGGCCCTCTCCCAGA  45 79
JRI60_RS45415 11401000 .. 11401017 -  -4.7  -2.52464   TTTCGGCTCAAGGTA             GGGCCGC TGTG GGAGCCC              GTGCCTGCCCCCTCT  42 206
JRI60_RS45410 11400580 .. 11400592 -  -4.7  -3.14132   CTTCTCGGTGATGAA                CGACG CCT CGGCG                CGGCTGGACGAGTTC  47 223
JRI60_RS45365 11392002 .. 11392038 - -11.5  -2.67515   TCCACGAGCAGACCA    TCATCGGGGACCTGCCC GCG GGGCAGATCGCCATCGA    GTTCGAAATCGAGAA  59 329
JRI60_RS45350 NONE
JRI60_RS45345 11387891 .. 11387909 - -12.4  -3.35679   CGTGCTGACGGAGAA             CGTCCCGG TGG CCAGGACG             GAGGAGTGAGCACCT  73 55
        dhaK NONE
JRI60_RS45305 11375437 .. 11375459 - -15.6  -4.03586   GTCCAAACACAACAA           CCCCTCTCCC TCT GGGAGAGGGA           CGGGGTGAGGGTAAA  93 64
JRI60_RS45275 11368431 .. 11368476 - -18.9  -5.24129   CGGCCTGAGAAAAAA GAAGGCGGCGGGCGGCCCCTC TGGC AAAGGGCCGTCCGCCGCTCCC GGTTGGCCGTGAGGA 100 286
JRI60_RS45245 11359961 .. 11359989 -    -8  -2.62184   GGTGCTGGGACACCA       GGGCGCCGCCACC CTGT GG-GGCGGCTGCC        TGGCGGTGGGGCTGT  48 142
JRI60_RS45230 NONE
JRI60_RS45225 11355903 .. 11355914 -  -7.2   -4.2558   GAGGGTGCACGAAAA                CGCG GCCC CGCG                 ACTTGTGGCCACCGA  72 284
JRI60_RS45215 NONE
JRI60_RS45210 11354615 .. 11354653 -  -4.2  -3.28712   CGCCCGGCTGGAGAA   GTCGGCGAGCGCGGCGCC CAG GGAGCAGCCCTCCCAGGC   CCGGAGGCTGGAGGA  49 515
JRI60_RS45185 11349147 .. 11349178 -  -2.9  -3.16683   ACTCTACGCCAGGAA     GGGTGCCGCGCGCTC TCCG GAGC-C-CGGCGCCG      GGCGCCGGGTCCGAC  44 49
JRI60_RS45180 NONE
JRI60_RS45175 11343531 .. 11343583 - -10.7  -2.70932   CCGTCCTCCCAACGA CG-CGGA-T-C-GCCGGGCCCTACGCG CGG CGCGCAAGGCCCTGCTGGACTCCGTCG CCCGCTCCACCCGCA  57 85
JRI60_RS45160 11341380 .. 11341402 - -12.7  -2.78596   CAGGGTCCCAGCACA           GCCCGGTCG ACGAG CAACCGGGC           AAGTCACTCCTCCCC  65 57
JRI60_RS45155 NONE
JRI60_RS45150 11336106 .. 11336124 -  -2.3  -3.70751   GAAGAAGGGCAAGAA            GCACGCGC GCAA GC-CGGGC             GAGGCCCCTCGCGTC  51 119
JRI60_RS45115 11329161 .. 11329176 -  -6.8  -2.72991   GGACACCGTGAAGGA              GCGGGT GCTG ACCCAC               CCCGAGGTCCGCCGG  46 137
JRI60_RS45105 11325880 .. 11325910 -  -6.1  -2.87132   CCCCCTTCCCATAGA      GCTGCT-CCGGGCA CCCA TTCCCGCCAGCAGC       GCGATACCCAACACG  48 117
         def 11323726 .. 11323748 -  -3.4  -3.80841   AGCACCACCAGGAAA           GGGGCT CGCATGTTCTC AGCCCC           GAGGCTCGTTCAATC  56 18
JRI60_RS45090 11322397 .. 11322409 -  -3.3  -3.44848   CTTCCGCATGAAAGA                CCGCC CTC AACGG                GAAAACTGGTCATCC  48 120
JRI60_RS45085 11320596 .. 11320607 -  -3.6  -3.36327   GGAGTCCAGCGACAA                GCCC GCCG AGGC                 CGAGGCCCTGTACGA  47 426
JRI60_RS45075 11318804 .. 11318823 -  -4.9  -3.62522   CAAGGTGGTGAAGAA            GCTCCGC TACGAG GCGGAGA             TCTTCCGCCCCTCTC  55 325
JRI60_RS45040 NONE
JRI60_RS45035 11312008 .. 11312018 -  -8.2  -3.29461   GAACCGCCGCGAGAA                 CCCC CTC GGGG                 ACATCGAGGTCTTCT  58 218
JRI60_RS45020 11308109 .. 11308132 -  -9.5  -3.69256   AGGGAGGGAAGAGAA          GCTCAGCGC TGATTG GCGCGGAGC           TCCTTCACCAACCGG  68 4
JRI60_RS45005 NONE
JRI60_RS45000 11305332 .. 11305342 -  -8.2   -2.8474   CGGCATCTACAAGGA                 GGCG CTG CGCC                 GCGCGGGGTGTGAAC  53 174
JRI60_RS44980 11300932 .. 11300956 -   -10  -3.30243   AGTCATGTGGCACAA          GGGCGCAC ACACACCAG GTGCGCCC          GGAGGAAGGTCAGAC  63 43
JRI60_RS44975 NONE
JRI60_RS44970 11298099 .. 11298139 - -16.1  -3.35679   CGCGGTTATCGAGAA  CTGGGAAGAGGCCCGCC AGATGGG GGCGGGCCTCCTACCGG  GTGCACCTCAGCCGC  85 47
JRI60_RS44965 11296677 .. 11296689 -  -9.1  -2.52635   ACCGGCAGCACGAAG                CGCTC AGT GAGCG                AACGGGTCGATGACA  54 16
JRI60_RS44960 11295508 .. 11295559 -  -3.5  -4.06904   GCACTCAAGGAGAAA TTC-CGCGCCCGCTACCCTCAC TGTTGGTTG GTGTGGGAGGCGGGCGTGTGGA ACGTGCCGGAGAGTA  61 485
JRI60_RS44950 11290454 .. 11290497 - -18.2  -2.90496   CCTCCCCCGAAACGA CGACGCCCCCCGCGGCACC TGGAGAC GGTGACGCGGAGGGCGT-G AGGACTTCACCGGCC  86 81
JRI60_RS44925 NONE
        crtI NONE
JRI60_RS44915 NONE
JRI60_RS44910 NONE
        crtI 11280463 .. 11280475 -  -4.7  -2.65815   GCCATACCCATACGA                GGCTC TCG GGGCC                GATGCAGGGTCCAGC  42 45
JRI60_RS44900 NONE
JRI60_RS44895 NONE
JRI60_RS44890 NONE
JRI60_RS44885 NONE
JRI60_RS44880 NONE
JRI60_RS44875 NONE
JRI60_RS44870 11274846 .. 11274873 -  -5.5  -3.67597   GGCGGGAGGGAACAA        GGTGAGCCCGA TGTGGC TGGTGCTCACC         TACCTGCTGCACACC  57 357
JRI60_RS44855 NONE
JRI60_RS44850 NONE
JRI60_RS44845 NONE
JRI60_RS44835 11267232 .. 11267256 -  -4.9  -3.61398   GGTGCGGGGTAACAA          GGGAAGCGTGT CCT ACACACTGCTC          GCTCTCGACCGGCGG  55 183
JRI60_RS44820 11264421 .. 11264444 -    -3  -3.36327   TCAGGCCACGGAGAA          GTGCGGCACGG GCA CCACGCC-CGC          CAGTTGCGCCGCCGA  47 53
JRI60_RS44805 NONE
JRI60_RS44800 11257465 .. 11257483 -  -4.4  -3.30124   GCGCAGCCTGGAGAA             GGCACGCC TCA GCCCTGCC             GCATGAGGCTCAGCG  49 15
JRI60_RS44790 NONE
JRI60_RS44785 NONE
JRI60_RS44780 11249460 .. 11249481 -  -6.5  -3.61398   GTGGCTGGCCAACAA           CGCGA-GCCG CTT CGGCTTCGCC           CGCACCGTGCCCTCC  59 129
JRI60_RS44770 NONE
JRI60_RS44765 NONE
JRI60_RS44760 11245477 .. 11245529 -  -8.2  -3.01712   CGCCCGTCGTCAACA CGCCGCCCGACACCACCCCGGGCAC CAAC GCGCCCGGCTCCGTGTCCGG-GTCG CCCCCGTCCGATGGG  54 434
JRI60_RS44740 11240693 .. 11240712 -  -2.7  -3.05844   GTCTCCACGCGAACA            CGCCTCC GTCAAG AGTGGCG             GGCAAGATGGGTATC  42 148
        nrfH NONE
JRI60_RS44730 11238624 .. 11238637 -  -8.1  -3.02144   GGACGCGCTGGAACA               GGACG AGGA CGTCC                AGCGCGTCTTCCACA  52 53
JRI60_RS44710 11233636 .. 11233649 -  -8.1  -2.63596   GGCGAGGGCAGAGGA               GAGGG TAGA CCCTC                GGCCTGAGCCTCCCG  50 49
JRI60_RS44695 11230678 .. 11230721 -  -6.9  -4.15106   GAGCAATTCGGAAAA CACGGCCCCC-T--TTTCTCAC GAG GTGAGAAAGCATGGGGGGCGCG GTCCTCCCGCCGGGG  67 43
JRI60_RS44690 11228491 .. 11228536 - -26.3  -4.41348   TCTGCCGTAAATAAA GACACGGGGGAGGTCCCCGGCA CGG TGCCAGGAACCTCCCCCGCG-C GACGACTCAGGGACT 100 48
JRI60_RS44675 11223627 .. 11223640 -  -8.1  -2.52023   CATGGACACGAAGAC               CCTGG TGGC CCAGG                TGGCCGAGGTCTCCG  48 423
JRI60_RS44640 11215436 .. 11215462 - -10.1  -2.94695   TGATGATGAAGGAGA        GCGCGAGCTGGC CGTT GCC-GCTGGCGC         TGGCGGCGCTGGCGC  56 470
JRI60_RS44605 11206587 .. 11206611 -  -2.8  -5.05782   ATGGAGGTTAAAAAA         CCGCCCCGCTC AATA GAA-GAAGCGG          GTGGAGAAGATGAGC  79 10
JRI60_RS44600 11205664 .. 11205711 -  -6.9  -3.65046   GCCGGACCCTAACAA GCCCGGG-ACGTGGCCTCAC GAATGGAGT GTGAGGCCCCGAGCCCGAGG GATTACGGGTTCCCG  61 28
JRI60_RS44595 11203873 .. 11203894 -  -7.9  -2.62184   TCTCCGGCTACAGCA           TGGGAGGCA GCAT CGCCGCCCA            TGCCGCCGCCATGTT  48 474
JRI60_RS44575 NONE
JRI60_RS44570 NONE
JRI60_RS44565 11198095 .. 11198113 -    -3  -3.80625   CGGTGAGAAGTGAAA             CGCTTCAC AAG GTGATGTG             CCCCTCGAGGTACAG  56 11
JRI60_RS44560 NONE
JRI60_RS44555 11192419 .. 11192457 -  -6.5  -3.57144   CCCCCGAGCCCGAAA  CCGAGCCGACGGAGACAG CCGA CAGGC-CCGCCGGCCAGG   TCTACGAGACGTTCG  56 367
JRI60_RS44545 11188213 .. 11188262 - -21.4  -3.57144   CCCGTGAGCCCGAAA TAGCAGGGGCCGGAGGCCGCTG GAACAT CAGCGACGTCCGGCCCCGGCTT CAGCGACCCCGGCGG 100 76
JRI60_RS44535 NONE
JRI60_RS44530 NONE
JRI60_RS44525 11184889 .. 11184919 -  -6.1  -3.14564   CTACGCCGCCACCAA      GCTCACCGGTGCGG AAGT CGGCACC-GTGACC       GTCGTCTGGTCCAAG  51 276
JRI60_RS44515 11183667 .. 11183686 -  -8.5  -3.21593   CAGCGGCGCAGAAGA            GCGCGCC CCTGGT GGCGCAC             CTGTTCGAGCCGCTC  56 314
        sthA 11179694 .. 11179709 -  -3.9  -3.42574   TCAACCCCATCAGAA              CAGCC GATTGA GGCCG               TTGAGCGCGGCCACC  49 4
JRI60_RS44495 NONE
JRI60_RS44490 11175932 .. 11175968 - -10.7  -2.73875   CGGCGGGGAAGACCA    CCGATCCGCGCGAGGCG TTC CGCCTGTCGGGGATCGC    CTACATCTGCTGGGC  57 445
JRI60_RS44480 11174135 .. 11174145 -  -2.4  -2.91274   GTCAGTCTAATGAGA                 CGCC AGA GGAG                 TGCACGCTTCCTGGA  40 108
JRI60_RS44475 11172919 .. 11172931 -  -3.3  -3.55563   AGGGCATGGCGCAAA                GGTGA CAG TCCCC                TCCGGCTTCCGGCCA  49 127
JRI60_RS44470 11172265 .. 11172287 -  -9.9  -4.09963   GTTCAAGAAGAAGAA          GGACCACTGC CTGC GC-GTGGTCC           TCACCGCGTAGCCCG  78 43
JRI60_RS44450 NONE
JRI60_RS44445 11162931 .. 11162947 -  -2.1  -3.28791   ACCCTCGGGGGAGAA              CTCGTGG TTT CCTCCAG              GCTGGCCGAGGTGCT  45 466
JRI60_RS44385 NONE
JRI60_RS44380 NONE
JRI60_RS44375 NONE
JRI60_RS44370 NONE
JRI60_RS44365 11146456 .. 11146466 -  -2.4  -2.70932   CCTCGTCGCGAACGA                 GTCC TCA GGCC                 TGCTGTTCCGACCGC  38 19
JRI60_RS44355 NONE
JRI60_RS44350 NONE
JRI60_RS44345 11141533 .. 11141550 -  -6.3  -3.21099   GCCCGCGAGCAGGAA             GGGGT-AG ACC CTCACCCC             AACCCTCTCCCAGGG  51 79
JRI60_RS44340 NONE
JRI60_RS44335 11136240 .. 11136254 -  -7.8  -3.42354   CACTGGAAGGGAGAA               GCCCTC CAG GAAGGC               GTGCCGGGGTTGCGT  59 64
JRI60_RS44325 11134920 .. 11134936 -  -2.9  -3.26813   ACCACACATGAGCAA              CGAAGAT AAA ATCGCCG              CACTGGAAGACAGGT  46 286
JRI60_RS44305 11131542 .. 11131554 -  -4.8  -3.07816   CGGCCATGCAGTCAA                CCTG CCGGC CAGG                GCTGCAATGGCCGCA  45 9
JRI60_RS44295 11130507 .. 11130559 - -13.4  -3.13343   AGCTGAACCACGGAA GCACCTCCCCTCACCCC-GTCCCTCT CCC AGGGGGAGAGGGGTGGGGGG-GGCAC CTCAGGCCCTCGCGG  72 27
JRI60_RS44285 11129263 .. 11129299 -  -3.5  -4.21275   GCAACTGATTGAAAA    GGAGCCGAATACCCAGA CGC TCCGGGAGCTCCACCCC    GGCACCGAAATCTGG  66 259
        argE 11123431 .. 11123460 -  -8.5  -3.28924   CATGTCCGGGGACAA       GCCCGGGCGGCG CGCCGAT CGC-GCCCCGGC       CCCTGGCAGGCACCG  58 67
JRI60_RS44250 NONE
JRI60_RS44245 11120892 .. 11120925 -  -5.9  -2.72344   GGCCAGCGGGAAGTA     CCCGCCTCCCGTCAGC GGT GCTGACCCGA-GCGGC     CGGCCTCGACGAGCG  47 3
JRI60_RS44240 11119809 .. 11119826 -  -4.1  -3.04461   CACGGACCTCCAACA             CCGC-GAG CTG CTCAGCGA             CCCGGACTTCGTGCG  45 176
JRI60_RS44205 11110707 .. 11110744 -   -12  -3.06162   GAGGCGACGCCAACA   GCCAGCGCG-AGTACCC CCTCT GGGCACTGCTCGCCGGC   TCGCCCTCCCCCATC  63 234
JRI60_RS44180 NONE
JRI60_RS44175 NONE
JRI60_RS44170 NONE
JRI60_RS44165 NONE
JRI60_RS44160 11098155 .. 11098176 -  -3.5  -3.53012   CGCCCCGGTGGGAAA           CGCCGCGGC GTGG ACGGAGGCG            GTGCACCGCGTCCTG  50 170
JRI60_RS44140 NONE
JRI60_RS44135 11091833 .. 11091852 -  -4.8  -2.91735   TCAACAGTCGACAGA            GCCGCTCG TCAC CGCGCGGG             CGCACCGAGAAGCGC  44 14
JRI60_RS44130 11090489 .. 11090547 -   -22  -2.64155   GGTGGGTCAAATCCA CTTCTCACCGGTGAGAAGTGAAACTG GGCGGGT CGAATCCACTTCTCACCGGTGAGAAG TGAAACCGGAGGCCT 100 39
JRI60_RS44125 11089193 .. 11089205 -  -7.7  -2.79183   TGCACGGCCAGGAGA                TTCCC GCC GGGAA                GATGGTGATGCCGAT  49 365
JRI60_RS44115 11087461 .. 11087493 -  -3.4   -3.6336   GGAGACTACACAGAA     GGCCGGAGACTTCCC GCGT GGGAAGT-TCCGAAG      CATCCAGAACACGTC  53 40
JRI60_RS44110 11084563 .. 11084582 -  -3.4   -3.7732   GGCCTACACGAACAA            CCTGCACA AGGC CGCGCCGG             TGAACCTGCCCGCGA  56 259
JRI60_RS44075 NONE
JRI60_RS44070 NONE
JRI60_RS44065 NONE
JRI60_RS44055 NONE
JRI60_RS44050 11070838 .. 11070863 -  -7.6  -2.71364   GGACGCGGGCAAGCA        GGCCT--GCGGG CTGG CCCGCTGAGGCC         CGTTCGCACCGGGCC  51 80
JRI60_RS44040 11069710 .. 11069722 -  -4.7  -2.98823   CGCTGGGGACATAGA                GGGGG CTA CCCGC                AGTATGTCACGGGTC  45 122
JRI60_RS44035 11066920 .. 11066940 -  -6.7  -3.15999   GCGGGAGACACCGAA            CGCGGCGAG GTA CTGCCCGCG            TACCGCGATCTCGCA  51 173
JRI60_RS44010 NONE
        lptC 11061747 .. 11061776 -    -2  -2.82895   TGGGCCACGAAGAAG       GCCGTCACGAGGT ACTCA ATCACGCG-CGGC       TCCCAGGGTCGTTCG  40 11
JRI60_RS44000 NONE
        lptB 11060036 .. 11060060 - -13.6  -3.05384   CGTGCGGGCAGGCAA         CCGG-ACCGGG GAGA CCCGGTGCCGG          GGAGGACCTCCAGAG  70 56
        rpoN NONE
JRI60_RS43985 11057138 .. 11057150 -  -3.3  -3.53012   TCCTGCCTCGCGAAA                CGGAC TGG GTCTG                CCTGGTGGTGGGCGG  50 484
JRI60_RS43975 NONE
JRI60_RS43970 11054575 .. 11054601 -  -7.1  -3.17075   GTCCTGCCAAGCGAA         CCCGCCGCCCC TCGCG GGAGCGGCCCG         CGTCTCAGGCGAGGA  52 30
JRI60_RS43935 11047680 .. 11047704 -  -3.6  -3.82083   GCACCACAAGTGAAA         GCCGCCAGC-AC CCC GTAGCTGG-AGC         TTCTGAGCAAGGAGC  57 44
JRI60_RS43925 NONE
JRI60_RS43920 11043479 .. 11043515 -  -3.6  -3.02144   TCATCCGCTCCAAGA   TGCGGCGCGTGACGAAC AACA GCCCGTC-CACCCCGAA    TGCCCCGGGCGAGCG  44 213
JRI60_RS43915 11043142 .. 11043160 -  -5.8  -3.01712   GGCCCGCGCGGAAGA             GGAGCGTG TCC CGCGCGCC             CGCTCAGGGCGTCTC  47 29
JRI60_RS43910 11042080 .. 11042107 -  -3.5  -2.90723   CCACGGGCAACGACA       GGGAGGACGAG-GG GGA CCGCTCG--CTCCC       GACCGAACATCATGG  43 74
JRI60_RS43905 11040404 .. 11040418 -  -3.4   -3.8186   CACGCGAATGAAGAA               CTCGCG AGG CACGGG               ACCCGCCTCAAGGCC  56 312
JRI60_RS43895 11039016 .. 11039042 -  -6.4  -3.31144   TGTTGAGGGTGAGAA         CAGACGCCGAGC CGG GCCCAGCAACCG         CGGCAGGCACGTGAG  53 428
JRI60_RS43885 NONE
JRI60_RS43880 11035936 .. 11035953 -  -2.7  -3.88396   CCCCAAAGCAAAACA             GCCAT CGGCAAAT ATGGC              CAATCTCGCCCTGCA  57 197
JRI60_RS43850 NONE
JRI60_RS43845 11030126 .. 11030140 -  -4.2  -2.90688   CAATGACGCGACAGA               GGGC CGCATAC GCCC               TCTCGCCCTCGAGCG  43 155
JRI60_RS43840 11029232 .. 11029244 -  -4.8  -3.82084   CTGCAAGATGAAGAA                GCTC GGCGG GAGC                GTGAGGATGAAGAGC  58 158
JRI60_RS43820 11022905 .. 11022949 -   -15  -2.68823   TTTCGTTCAGAGAAG TGGCGGCGACCCGCGGGCGTGA GAA TCGCGCCCCCAGG-CGC-GCCA GACAAGGGTTCCAAC  72 69
JRI60_RS43815 11022327 .. 11022350 -   -11  -3.37344   CGCCTACTGAATGAA          GAGCCCTCTC CCTC AAGAGGGCCC           CCATCCCGCCTACGC  68 53
JRI60_RS43810 11017318 .. 11017335 -  -2.6  -3.92178   ACGAGCGGAAGCAAA             CCGGGA TGAAGG TCCGGG              TGGTTCCAATGACTG  57 331
JRI60_RS43795 11012777 .. 11012800 -    -3  -2.62184   TGCTGCTCGACATCA          CCCGCATCTCC CAG GGGGA-GCTGG          CCCTGCGGCTGGAGG  39 513
JRI60_RS43775 11008985 .. 11009006 - -14.4  -3.28924   CAGCGGGTGCGAGAA           GGCGGCGC GGTGAG GCGCCGCC            TTCGTCGGTGCGGGG  75 79
JRI60_RS43770 NONE
JRI60_RS43765 11005879 .. 11005915 -  -5.6  -2.70932   CGCGGCCGCGAACCA    GCTCGGCTGGCACCTC AACTG GCGGGCCCAGCCGGAC    GGCCTCCGGCAGTCC  44 344
JRI60_RS43755 NONE
JRI60_RS43750 11002672 .. 11002682 -  -6.8  -2.71144   CACCCTGCTCAACGA                 CGAG CTG CTCG                 TGCTGCCCACGGGCC  46 208
JRI60_RS43735 10998465 .. 10998484 -  -7.2  -3.33696   CCGCTCCCGAACGAA            TCGTTCTC CCAG GAGAACAA             TCACTCCCACTTCGA  54 26
JRI60_RS43730 10997806 .. 10997836 -  -7.4  -3.63569   CGAATTCGCCAACAA       CGAGCGCCGCTGGC ATC GGTAGCAGCGCTCC       CAGCCACGCCGGGCT  63 113
JRI60_RS43700 10989082 .. 10989135 -    -5  -3.39327   CCTCGACATCGAGAA GCGCTGCAAGCGAGGTTGCCTCAC AGCGGA GGGACGCACCCTCTCGAGCAGCCC GAGGCGACCGCTCGC  51 192
JRI60_RS43695 10987886 .. 10987904 -  -3.9  -3.61398   TCCTCCTCTGAAGAA            GGTGAAGA TTGT TCTTC-CC             GTGTTGCTTTGAGCG  51 204
JRI60_RS43690 10986687 .. 10986712 -  -2.6  -3.41745   CGCCGACAACAGCAA         CGAGAAGA TTTTCCGCGT CCTTCTCG          GGCAGTAGGCAGCTG  46 195
JRI60_RS43660 10979805 .. 10979833 - -15.3  -3.02144   TGATTCGCTGGAAGA        GCCCAGCACTCCC GAG GAGATTGCTGGGC        TCTTCATGGCCGGGA  77 45
JRI60_RS43650 10976952 .. 10976981 -    -5  -3.86372   TCAAGGGAAAGACAA       TCCGC-TGGAGGG CTTTT CCCTCCATGCCAA       TACCCACCTGCATGA  58 66
JRI60_RS43645 10975381 .. 10975391 -  -2.4  -4.56597   GGTTCGCGCCAAAAA                 CCGC GGG GTGG                 GCTGACGGCATCTTC  70 295
JRI60_RS43635 10971208 .. 10971231 -    -3  -3.30124   CTCGAGGCGCCACAA          GGGCTCC-GTG CAC CTCTGGATCCC          ACTCGTCGACATCGA  47 466
JRI60_RS43610 NONE
JRI60_RS43605 NONE
JRI60_RS43600 10956576 .. 10956594 -  -8.8  -2.80816   TCGGCAGCCAGCACA             GCACCGGT AGA ACCGGTCC             CTCCTGCCCCGGCGT  54 93
JRI60_RS43590 10954181 .. 10954194 -  -4.5  -3.07013   CACGCCCCGAACATA               CCCCA TGCG TGGAG                ACACGTCGCGCGTGT  45 77
JRI60_RS43585 10953352 .. 10953381 -  -8.5  -3.16564   CGTCTATGCGAGGAA       CCGG-CTGGAGCGC CTG GGGCTCGAGACCGG       CATGACGGACGCCGG  56 345
JRI60_RS43570 10950766 .. 10950783 -    -7  -3.57144   TGGGCCAGGCGCAAA             GGATGG TGGTAG CCATCC              GGGCCGAGAAGGGTG  58 71
JRI60_RS43555 10948504 .. 10948527 -   -11  -3.21416   TAGCGCGAGGACGAA          GCC-GCGGAGA GCA CCTCCGCCGGC          TTCATCTAGAAGGGT  64 31
JRI60_RS43540 NONE
JRI60_RS43535 10940962 .. 10940981 -  -9.2  -3.28791   ATCCCTCCTGCACAA            CTGCGGTG CCAT CACCGCGG             CCAAGGCCGCGCTGG  58 329
JRI60_RS43515 10937869 .. 10937913 -    -7  -2.82516   GCCGCGACCAGTACA TCCTCGACTCCGCCCACCACG GACT CGCGATGAGCGGCGATG-GGA CCAAGCTCTGCGTGG  46 446
JRI60_RS43500 NONE
JRI60_RS43495 10934479 .. 10934498 -  -4.9  -4.79451   ATGCGAAACAGAAAA            TCCGGGG CTTCAT CGCCGGA             CTGCTGGAGGGGCAT  82 389
JRI60_RS43475 NONE
JRI60_RS43470 10929379 .. 10929391 -  -7.7   -3.0464   AAGGCAGCGGCAACA                TCCAG TGT CTGGA                CATGCTGCGCGCGGC  52 425
JRI60_RS43460 10926991 .. 10927011 -    -9  -3.53012   CCTCCGGGCTGTAAA            GGCGATTC ATTGG GAACCGCC            CCTCTCGGTCGGCGC  64 59
JRI60_RS43455 10925673 .. 10925711 - -12.4  -3.16564   GCTCGACTTCACGAA  GGCCCGC-CTGGGTGGG GGCCTG CCCATCCAGCGCGTGCC   GCTCGACTTCCACGC  69 504
JRI60_RS43440 NONE
JRI60_RS43435 10919598 .. 10919628 -  -3.9  -3.31461   CACCGAGCGCGAGAA      CCCCTCGA-GCGGC GTGA GCCCCTTCGATGAG       CTGGTGGGCAAGAGC  47 501
JRI60_RS43420 NONE
JRI60_RS43415 10915789 .. 10915803 -  -5.6   -3.1855   CTGTCCAACATTCAA               GGTGTG CAC CTCACC               ATGGGAACGCAGGGC  49 86
         tal NONE
        rpiA 10913892 .. 10913925 -  -3.7  -3.08996   GAGGCCGAGGGAACA     GGCAGGCAGGAGA-GC GCC GCATCGTCCGCCTGGC     GGGACTCAAACCGGC  45 31
JRI60_RS43400 10913045 .. 10913089 - -12.7  -2.59742   TGCAACCTGGAGAAT GCCCGGCTCATCGGCGCCAAC CTC GTCGGCGCCAATGCCCAGGGG GCGAACCTGGAGGGC  62 492
JRI60_RS43390 10911479 .. 10911490 -  -4.4  -3.96148   CGCCCCGAGCAGAAA                TCAG GCGT CTGA                 CACGTGAGGCACTGC  61 101
JRI60_RS43385 NONE
JRI60_RS43380 10904969 .. 10904981 -  -4.7  -3.17723   CGACCGGGAATGGAA                TCGCG AGC CGCGC                TGTAGAACCTCATTA  47 38
        raiA 10903818 .. 10903833 -  -4.6  -3.14132   GGTGGGCGTCATCAA              CTCGCG CCAG CTCGAG               CTCGTCACCATGGCC  47 303
JRI60_RS43365 NONE
JRI60_RS43360 10900769 .. 10900805 -  -8.6  -2.70932   GGCGCTCGTCAACGA   CGGCCCCGTCACCCTCC TCCT GGAGAGCC-CGGGGGCG    GCCGCACCGCCTACG  51 36
JRI60_RS43345 10897569 .. 10897590 -  -2.9  -2.64126   AAGGACATGGACAAG           GCGGTTCCT GGTG AGGAAGAGC            GGCTCAGCCTTCGGA  39 29
JRI60_RS43340 NONE
JRI60_RS43335 10894710 .. 10894735 -    -4  -3.42482   CGACGGAACACAAGA         CACTCCTCTT CAGGCC AAGAGACGTG          CGCGACGTACCACCA  49 9
JRI60_RS43330 NONE
JRI60_RS43325 10891552 .. 10891576 -  -9.2  -3.68704   AGAAGACGGGAACAA          CCGACGCTCC CGGGC GGAGCGCCGC          TTAATCGACACGCAC  68 106
JRI60_RS43320 NONE
JRI60_RS43315 NONE
JRI60_RS43310 10887666 .. 10887688 - -14.9  -3.53444   GCACCGCCTCTGAAA           CCCACCGTG CTCCC CACGGTGGG           CCGAACCCCGTCCCT  81 70
JRI60_RS43290 NONE
JRI60_RS43285 NONE
JRI60_RS43280 10881294 .. 10881310 - -10.9  -2.82516   TGGGCCAGGACGAGA              GAGCAAC CTG GTTGCTC              CAGCTACCCTCACCC  61 100
JRI60_RS43255 10876468 .. 10876494 -  -7.1  -2.97747   CTCCGACAGGAGAGA         GCCGGCGAGGG CCCAT CCACCGGCGGC         GGTCATTCGGTGGAC  51 28
        dacB 10873880 .. 10873915 -   -14  -2.85351   TCGCCCTATAGCATA    CCGGGTGAGTCCCCAC CTGA ACAGGGATTCACCCGG     TCATCCGTTGGCTGA  71 73
         ssb 10873200 .. 10873255 - -15.5  -3.90744   TCTTCGCCGAAACAA CCCCGCAACGACAACGGCCGC-CCCGA ACAT CCGGGAGCGGCCGTT-TCGCTTCCAGG CGGTCGGCCTAGAAC  91 34
JRI60_RS43235 NONE
JRI60_RS43230 NONE
        selB 10868656 .. 10868680 -  -2.7  -2.71712   CCGTCTCGCTGAAAC          GCTTCGTCG TCATGCG CGCCGCAGC          ACCCGCTTCTCTCCG  40 10
JRI60_RS43220 NONE
JRI60_RS43215 10864365 .. 10864409 - -12.2  -4.59773   CCCGAGGCCCAAAAA GAA--GGCGGCCCGGTACCCTC ATG AAGGGGACCGGGCCGCGGGTTC TTCTTCAAAAGCTCA 100 332
JRI60_RS43175 10854171 .. 10854184 -  -5.9  -3.53444   GCACCCCGCCTCAAA               GCGAG CCTC CCCGC                CGACTGTCAGGGAAT  56 32
JRI60_RS43170 NONE
        serB 10851030 .. 10851048 -  -8.1  -3.37354   CACACGCAGGGACAA             GCCCTCG AGCGA CGAGGAC             GAGTTCAAGATCGTC  55 368
JRI60_RS43155 NONE
JRI60_RS43150 10849920 .. 10849936 -  -4.3  -3.54919   AACCATGCTTTGAAA              CGTGTCA AGG CGACGCG              CCGCGGGCCCATTCC  52 48
JRI60_RS43145 10849174 .. 10849231 - -20.6  -3.11634   CGCCAGACGACGGAA GCGGCGAGGCG-TCTC-CACGGGGCCCG TTCC CAGGCTCCGTGTGAGGGCGCATCGCCGC TCGTGTATGCCGCGT 100 124
        wecB 10840904 .. 10840922 -  -2.2  -2.67515   TGGACGACGAGAGCA             CGCGCGGC CCT GCCATGTG             AATCTCCCGGTCTTC  38 52
JRI60_RS43100 10840114 .. 10840140 - -12.3  -3.01791   AGCGCGGGCTTAACA         CAGAGGGAGGA CCGCT TCCTCCCCCCG         CCCGGCTGCTCCCTG  67 64
JRI60_RS43095 10839085 .. 10839099 -  -2.7  -2.62396   CACGCCGCGAGATTA               CCGCG ATGAG CGCGT               GCCATCACCTTCTGG  39 30
JRI60_RS43090 10837777 .. 10837810 - -11.6  -3.48276   GCTGCGGTGAGAGAA     CGGGGG-CGGCCGGG CCTTC CCCGGGTGACCCCCG     GGGGGAAGATGGGAA  70 109
JRI60_RS43085 NONE
JRI60_RS43080 10837050 .. 10837063 -  -8.1  -2.62735   ACAGGGCTCAGAGCA               CCTCG GCTC CGAGG                GCGCGCACCAGGACG  50 4
JRI60_RS43075 10836428 .. 10836440 -  -6.9  -3.29511   GCGAGGCCCCGAGAA                GGGGC CTC ACCCC                GTGTTCACCCCCTGT  54 19
JRI60_RS43065 10833279 .. 10833302 -  -7.4  -4.13767   CCGTTGACCGGAAAA          CAGCGCCGCCA GCT TCGCGG-GCTG          GGACACCACCTGGAG  69 285
JRI60_RS43045 10828433 .. 10828449 -  -2.9  -3.42841   ATAATCGGACCACAA              CCGGC GCTCCCA ACCGG              ACGGTCCGTCCTCAT  48 405
JRI60_RS43040 NONE
JRI60_RS43035 10826676 .. 10826703 -    -9  -3.24924   CCCTCACCGAGAAGA        CGCTGCTGGGACG TTA CGACCCGGC-GCG        GATGCAGGAAGAGGA  56 202
JRI60_RS43000 NONE
JRI60_RS42995 10817923 .. 10817961 -  -3.7    -4.015   TCATTTATGAAACAA  TCCCGGGGAGGC-AGGTC AGAT GACCTAGGCTCCCTGGTC   CATTTTTGAAACGAG  59 307
JRI60_RS42990 10817005 .. 10817020 -  -2.6  -4.56775   AGCTCGTTTCAAAAA              TGGACCT GAG AGGTC-A              GGTAACATGCCCTGC  67 41
JRI60_RS42985 10815194 .. 10815223 -  -2.8   -3.2218   GGTAACAGCCAGGAA       GCTC-GCAGCC TGGGATGTT GGCAGCAGAGC       GCGGCTCCAGATAGC  46 482
JRI60_RS42970 10810966 .. 10810983 -    -7  -3.21099   CTGCTCCACGACGAA             CGGATG TCCTGG CATCCG              GGGCGCGCGCGGCAT  52 515
JRI60_RS42960 10810370 .. 10810412 -  -8.3  -3.10894   ACGAGGACGATGCAA GGCGCGTGCACCC-GCCTGTC TCA GGCCGGCTGGATGC-CGAGCC GCTCGTCTCTCCGTC  56 3
JRI60_RS42955 10809852 .. 10809878 -    -5  -3.50853   GGCGGTGAAGGAGAA         CCTCCCCCGGAG CTA CTCGGACGAAGG         CGCCTCCTGAGCGGG  52 43
JRI60_RS42945 10808416 .. 10808431 -  -3.9  -2.71268   CCCCACGATAGATCA              GGCGC GGCGCA GCACC               CGGACATTCACGCCG  41 7
JRI60_RS42940 NONE
JRI60_RS42935 10804103 .. 10804124 -  -5.8  -3.35597   TGCATGGCGGAAAGA           CGGAGGAG CCGCTC CTACTCCG            GATCTCGCAGGTCGG  53 18
JRI60_RS42930 10803023 .. 10803039 -  -7.9  -3.13403   TTTCGCCGATGAACA              CTGACGC GCC GCGACAG              ATTTTCGCGGAAGCT  54 40
JRI60_RS42925 NONE
JRI60_RS42920 NONE
JRI60_RS42915 10799311 .. 10799351 -  -9.1   -2.7736   AGGGAGAGCGAATCA GGGACGTGTGCCTCGGGCTG AAGT CAGCC-G-GGCACT-GTCCC GAGATGGGAATGGGA  55 325
JRI60_RS42910 10798790 .. 10798836 - -14.5  -2.57026   GATACGCAGACGAAG CGCCCCCCGCGC-TCTTCCG CTGAAGCC CAGAAGAAGCGCGGGAGGTG AACGCGCCCTCTTCA  71 38
JRI60_RS42900 10794093 .. 10794106 -  -5.9  -3.06796   CGCGACCGGAGTCAA               CCGGA TGCA CCCGG                AGCGTCAGCGGCCCT  49 30
JRI60_RS42895 10793158 .. 10793168 -  -6.8   -3.7941   CACCCTCTACAACAA                 GCTC GAG GAGC                 ACGGGCTGGTGTGAG  64 43
JRI60_RS42870 10788000 .. 10788013 -  -2.3  -3.57792   GGACGGAGCGGGAAA               CTTCG GCGT CGAGG                GAGGCCCCGCGCTGT  48 177
JRI60_RS42805 10772750 .. 10772761 -  -2.2  -4.07568   CGCCGTCTGGGAAAA                GAAG TCGC CCTC                 CTTCTTCACCAACCT  60 151
JRI60_RS42790 NONE
JRI60_RS42785 10769855 .. 10769873 -  -2.3  -2.78384   TGCCGCCGCATCACA             CACCTCC CATCT GGATGCG             CATCGCCTGCGTGGT  38 2
JRI60_RS42780 NONE
JRI60_RS42775 10768206 .. 10768218 -  -3.3  -2.52635   ATGCGCATCATGAAT                GGCTC CTA GAGAC                CGAACCGCACAACGA  39 18
JRI60_RS42770 10762997 .. 10763027 - -16.9  -5.07652   TCCCGCAAAAGAAAA       TCCCCTCTCCCAC ACCAG GGGGGAGAGGGGA       TGCGGACTCACCGGG 100 76
JRI60_RS42760 NONE
        hemW NONE
JRI60_RS42750 10756748 .. 10756769 -  -5.8  -3.72576   GCGCTTCGGAGGAAA           GGCGGTGT TCATCG ACACCGGC            CTGAGCACCGGCTAC  57 177
JRI60_RS42735 10748701 .. 10748717 -  -7.9  -3.01712   TTTTCCGGCGGAAGA              CCTGGTC AGC GACCGGG              CGGCCTCACTCGCCG  53 31
JRI60_RS42730 10746716 .. 10746738 -  -2.6  -2.62983   TCCACCGCTACACCA          CG-CTGGGC GTGGGG GCCCGGACG           GGGATGCGTTGGGGT  38 343
JRI60_RS42715 NONE
JRI60_RS42710 10743158 .. 10743189 -    -5  -2.57931   GCCATGGCCGATAAG      CTGGGCGCGGACCAC ATC GTGGTGGGCGCTC-G      TGGCCTCAACCCCGG  41 353
JRI60_RS42695 10739713 .. 10739725 -  -7.7  -3.61398   CTGCTGCTTCAACAA                CGTCT GCC AGACG                GGCAACACCGCAGCC  61 512
JRI60_RS42685 NONE
        sufB NONE
        sufC NONE
        sufD NONE
JRI60_RS42665 NONE
JRI60_RS42660 NONE
        sufT 10732920 .. 10732933 -  -3.7  -3.14026   CAGAGGGAGAGGGAA               CCCAC ACAG GAGGG                AATCCGGGGTCTACA  45 36
JRI60_RS42650 NONE
JRI60_RS42645 10731447 .. 10731467 - -10.4  -3.60296   TACCGGGACTTCAAA            CGGCTCGC CCACT ACGAGCCG            ATCGTCTATCGGCCG  67 72
JRI60_RS42595 10714331 .. 10714347 -  -9.3  -2.78384   GCTTCGTGGACCAGA              CGGGCCG GCC CGGGCCG              CTCACTTGGCGGGAC  54 510
JRI60_RS42580 10710368 .. 10710383 -  -6.8   -3.8062   GAAGGCCGAGAAGAA              GGCCTC CAAG AAGGCC               GAGAAGAAGGCCGAG  62 210
JRI60_RS42570 NONE
JRI60_RS42565 NONE
JRI60_RS42560 10706636 .. 10706658 - -15.6  -3.63569   CCAACCCCCCAACAA           CCCCTCTCCC TCC GGGAGAGGGA           CGGGGTGAGGGTACC  85 65
JRI60_RS42540 10701119 .. 10701162 -   -13  -3.10612   CGCAACTCGAAGAGA CCCCACCGACCCGCTCGTCG CCGT CAACGAGCGGGTCGGAGTCC AACCTCACGCCACGG  72 30
JRI60_RS42535 10700419 .. 10700458 -  -4.9  -2.65442   ACATCACCGAGACGA  TGGTGGCCCTCGCGCTGG AGTCG CCGTCACGAGGGCTA-CA  GCAGGGGTGAGGGCA  42 21
        speD NONE
JRI60_RS42520 10697096 .. 10697106 -  -6.8  -2.70932   TGCCTCCCTCAATCA                 TCCG AGC CGGA                 CCCCAGGTTGCTCTC  48 8
JRI60_RS42515 NONE
JRI60_RS42510 NONE
JRI60_RS42505 NONE
JRI60_RS42500 10693423 .. 10693441 -  -5.8  -3.87737   GAGAAAGACGAAGAA             GGCGCCTG GGT CTGGCTCC             ACATCCTGGAGACCT  63 132
JRI60_RS42465 10680624 .. 10680650 - -11.7  -3.06915   AGGCATTCCATGCAA        GTGGAGGG-TGA CCCC TCAGCCCTCCAC         CCGCTGGGGCAGCTC  65 14
JRI60_RS42445 10676691 .. 10676701 -  -6.8   -2.8805   AGGAGTCTGGACATA                 CGTC CCA GACG                 CTTAATCACGCACTC  50 27
JRI60_RS42440 10674199 .. 10674244 -  -6.8  -4.02108   TGGACCAGAATGAAA TCC-GCGTGAAG-GCACGGGAG AGCG CCCCCGGCCGCGTCACGCTGGA GGTGAGCGACACCGG  67 299
JRI60_RS42415 10665541 .. 10665574 -  -4.4  -3.14881   CAACCTCCTCATCAA     CGCCGCCCACGCCA TTCCTC CGGGACAGGCGACG      CGGAACGAGATCCGC  47 328
JRI60_RS42390 10660021 .. 10660046 -   -14  -3.62644   CCCAGAAGCAGAGAA         GTGGGCCCAC CTGGCC GCGGGCCCAC          CCCACCTCAGGCGGG  80 32
JRI60_RS42385 10658324 .. 10658357 - -20.3  -2.80816   GCCTGACCCACTACA     CCCGCTTCGAGCTGC TGGA GCTGCCCGAAGCGGG      TGGGAAGAAAGGCAA  86 379
JRI60_RS42365 10655711 .. 10655724 -  -3.7  -3.39327   GGGCTACACCTACAA               GGGCC CGGT GGCGC                TGGGGCTGACGTACA  47 382
JRI60_RS42355 10653906 .. 10653936 -  -8.9  -3.41051   TGATTCCGAGGACAA      GGTGCGCCAGCGCC TCCA GGCCCTG-CGCGCC       CGCATCACCGAGGTC  58 471
JRI60_RS42340 10650954 .. 10650967 -  -8.1  -3.14564   GGAGCGCCTGACGAA               GCTCG GAGC CGAGC                CCGTCAGTCCTGTCC  54 167
JRI60_RS42305 NONE
JRI60_RS42300 NONE
JRI60_RS42295 10638971 .. 10638987 -  -4.3  -4.19704   CAAGTGGATGGAAAA              CAACGCG AAG CGCTTCG              GCTTCATCCGCACCG  67 92
JRI60_RS42275 10627690 .. 10627707 -  -2.5  -2.63596   CTTCATCTCAGACCA             GCGCGGG CTTT CCCTTGC              GGAGCAGATTGAAGA  38 0
JRI60_RS42270 10626719 .. 10626733 -  -7.1  -3.21747   GGACCCCACCATGAA               GCGCT CACCC AGCGC               GCCGCCCAAGCCTTC  51 90
JRI60_RS42255 10623903 .. 10623920 -  -4.1  -4.15222   AGCGTTGCCAAGAAA             GAG-CGCC CAG GGCATCTC             CGAATCTGGATTGCG  61 463
JRI60_RS42250 NONE
JRI60_RS42245 10621873 .. 10621902 -  -4.9  -3.05384   TGCGCCCGGATGGAA       CTCCTGGCCCGGAA GAG TGCCCGGCC-GAAG       CCCATAAGGCGATGG  45 418
JRI60_RS42225 10618835 .. 10618854 -    -7  -2.78384   CCTGGGTTGACGACA            CCCGCCCC CGAG GAGGAGGG             ACCCGGAGAGGCAGG  48 78
        bioB NONE
        bioF 10616458 .. 10616469 -  -2.2   -2.8474   GGGTAGCGAGAACCA                CG-GG TTG CCACG                AGACCTCCCACTTGG  40 46
        bioD NONE
JRI60_RS42205 10615316 .. 10615328 -  -3.3  -3.21276   TCCGGGCGGAGAAGA                CGCTC ACA GACCG                GTCTGCAGCATGGCG  44 16
JRI60_RS42200 10613724 .. 10613739 -  -4.6  -4.08394   ACAGCCCTGGTAAAA              CGAGCT TCGG AGCGCG               CCGAGGAGGCGCGTG  63 436
JRI60_RS42165 10603327 .. 10603343 -  -6.5  -2.62184   CCCCGGGGGACAGGA              TGAAGGG CGG CCCTTCT              TCCCCTCCGCACCGG  45 470
        gspG 10590379 .. 10590410 - -10.9  -2.56596   TCCGCCATGAAGGTA      GGTCCG-CGTGCCC CACCC AGACACGGCGGACC      CCCTTCCGGCAGGGA  59 77
JRI60_RS42135 10589717 .. 10589730 -  -3.1  -2.51133   GAGGGACTGACGAAG               GTGTCC ACC GG-CAC               GAGCAGCACCCAGAC  39 241
JRI60_RS42115 10583638 .. 10583681 -  -7.9  -3.93117   GGAAGTAGAGAACAA GGAGGGCCCCGCGG-GCACC GTACT GGAGCGCCACGGGGCTCGCA AACGAGGCCTCGCGC  68 42
JRI60_RS42110 10581084 .. 10581115 -  -4.2  -2.59881   CAGGGACTGCAGAAG      GCCGTCCGCACCTC CGCC GAGGGGCGCAAGGT       GGACCGGTTGCTGGT  41 292
JRI60_RS42085 10576988 .. 10577006 -  -4.5  -3.29511   TGGATGGCGTCACAA             CCGGC CAATCAGGC GCCGG             CCTCCGTGCCGGGCG  49 313
JRI60_RS42050 NONE
JRI60_RS42045 NONE
JRI60_RS42040 NONE
JRI60_RS42035 10566711 .. 10566732 -  -7.9  -2.73681   CATCCAGGTGAACGA           GCACACCGG CTGA CAGGCGTGC            CCGTTCCCCCTGGCG  51 63
JRI60_RS42020 10563348 .. 10563381 -  -9.5  -3.58343   GCCATGACGTGGAAA     TGGTGCTGGTGCGCGG CAA CCACG-ACCGGCACCT     GGACTCGCTGCCCGC  67 362
JRI60_RS41980 10555360 .. 10555387 - -12.7  -2.78384   GTTGGGTTGACGAGA        CCGAGGGCTCC ACTCGG GGAGGCCTCGG         TCTGTTCATGGGGTT  65 110
JRI60_RS41975 10554031 .. 10554046 -    -4   -3.2614   GACGGCCGACATCAA              GAAGAA CGCG CTCTTC               GCCACGCCGGAGAAG  47 182
JRI60_RS41965 10551185 .. 10551206 -  -3.5  -3.53012   TGCGCTTGCTGCAAA           CGCCCGAGG ACAT CCCCGCGCT            CGCGCCGCTCGCCGT  50 510
JRI60_RS41955 NONE
JRI60_RS41950 10548723 .. 10548738 -  -6.8  -3.29144   CCAGTGGCTCGACAA              GGCGCA GAAG TACGCC               GAGCAGAAGAAGTTC  53 489
JRI60_RS41935 10546422 .. 10546458 -    -8  -3.95852   ACCCGACGAACCAAA   GGAGC-GCCGCCACC AACACGAG GGCAGCGGCCACTCC    GGGAATCAGCCATCG  68 94
JRI60_RS41930 10542829 .. 10542852 -  -5.2  -3.04263   ACGCGACCTTCAAGA          TCGTCGCCGGC CTG GCTGACG-CGA          GCTGCTACTCGCTCG  47 386
JRI60_RS41895 NONE
JRI60_RS41890 NONE
JRI60_RS41885 10533889 .. 10533907 -  -4.5  -4.42788   CCCAACGCCAGAAAA             GTCAGCG CAGCC CGCTTAC             CGGTTTGAAGTCATC  69 69
JRI60_RS41880 10532949 .. 10532976 -  -8.2  -3.15544   GCTCATGGCCACGAA        CCCCCTCAGACG TATC CGGCGGGGGGGG         CTCACGGGGAACGAC  56 164
JRI60_RS41870 10529173 .. 10529198 -  -4.6  -3.28712   GCTGCTCTTCGAGAA         CCCCGAGCAG TTCGAG CAGCTCAAGG          CGAAGCCGGAGCTGA  49 434
JRI60_RS41855 NONE
JRI60_RS41850 NONE
JRI60_RS41845 10525089 .. 10525099 -  -2.4  -2.95298   GCGATTGAGCACATA                 CGGC CCA GCCT                 CCCATTCGCGGATCG  41 120
JRI60_RS41840 10523437 .. 10523452 -  -2.4  -3.73914   ACGACCCAGGAACAA              CCCGGG CTCG CCCGAC               CCCTGCCGCGCGAGC  55 227
JRI60_RS41830 NONE
        istA NONE
        istB 10518423 .. 10518436 -  -3.1  -3.86015   GAGGGTTCGCAGAAA               TC-GCG GCG CGCAGA               CAGGCGTAGCGCAGG  56 480
JRI60_RS41785 10508951 .. 10508973 - -15.6  -3.63341   AACACCCCCCAACAA           CCCCTCTCCC CCT GGGAGAGGGA           CGGGGTGAGGGTATA  85 69
        glgA NONE
JRI60_RS41770 NONE
JRI60_RS41765 10505294 .. 10505341 -  -7.6  -3.61398   GGGGTCGGCGAACAA GCGTCCACCTGCCCCCAACCCCA CCT TGGACATGGGGCCAGG-AGACGT GACTTTAGCGGTCAG  60 71
JRI60_RS41760 10504085 .. 10504103 -  -2.3  -3.32268   GAAGCAGGTGGAGAA             GCAGCCC GACGG GAGCTTC             CTGGTGGACGCGGCC  45 342
JRI60_RS41750 10502116 .. 10502164 -  -5.9  -3.05384   GCGTGCTCGATGGAA GCGGA-GCCCAGCCCGAGCAGG CGGTGC CCTGATCGGGTTGCGCATGCAC CCTCTCCCTCTGGGA  49 74
        glgX 10495837 .. 10495857 -  -2.3  -3.30771   GGAGACGGGGGACAA            TCGGCGGGG AGC CCCGGCCCT            CACACCTGCCCGCCT  44 55
JRI60_RS41720 10495194 .. 10495221 - -16.3  -4.46212   GCCCCCATGACAAAA        GCCACGAGCCC ACCAGG GGGCCCGTGGC         TTGCCTGAAGTCCGC 100 83
JRI60_RS41715 NONE
JRI60_RS41710 10491901 .. 10491933 -  -6.9  -4.01047   AATGATGAAGAAGAA     TC-TGCCCCCGGGC AATGAA GCCCGGGGGGGCGA      AGTGTCACACCGAGA  66 30
JRI60_RS41705 10489862 .. 10489916 -  -9.2  -2.77899   CTGGCCGAGGAAGCA CTACCTCCAGGCGCTCGCCCGGGCCC TGGAG GAGCCCACGCG-GCGCG-GGAAGTGG ACGGGCACCTGAGCC  55 47
JRI60_RS41690 10487537 .. 10487551 - -11.4   -3.7108   AGGCGGAGATCGAAA               CGGAGC GCG GCTCCG               GCGTGGTGCGCTTCC  72 151
JRI60_RS41680 10485471 .. 10485489 -  -2.2  -3.62046   CGAGGGCCTGAAGAA             GCACCGCA TGT CGCCGAGC             GAGTACCACGCCATC  51 411
JRI60_RS41670 10483799 .. 10483815 -  -2.1  -3.04263   AGGCGAGGTGGAAGA              CGAGGCC GCT GGCGTGG              GCGTTCTGGAGCATC  41 478
JRI60_RS41645 10477982 .. 10477995 -  -2.3  -2.91276   GGGCCTCCGAGAAAC               GGGAT GATG AGCCC                TCGAACACGGGGACT  40 75
JRI60_RS41640 10477088 .. 10477119 -  -5.2  -3.04263   AGCTCACCGGCAAGA     CGGCCAACTGAGCC GTCACG GGCTCA-C-GGCCG      GGGCCAGCCGAGCAG  47 17
JRI60_RS41625 NONE
JRI60_RS41620 10473407 .. 10473435 -  -6.6  -3.17392   GAGTGGGGAACCCAA       CCACTCAGCGCAG CTTG CGGCGCAG-GTGG        TTGAGCAGGTCGATG  51 1
JRI60_RS41615 10470582 .. 10470602 -  -3.1  -3.71848   GGCGGTGACGAAGAA            GGATCCGGC GCA GCTGGACGC            GAGGGCGGAGCTGGG  53 501
JRI60_RS41555 10453303 .. 10453353 - -11.6  -3.43264   AAGCATGGAGGACAA CGGGTGGGGGGCGGCCCCCCCAAG GGG CCTGGGGGGAGGACCCTACACCTG GGGGCTCAAGTCCCC  70 31
JRI60_RS41550 NONE
JRI60_RS41545 NONE
JRI60_RS41540 NONE
JRI60_RS41535 10445736 .. 10445751 -  -7.6  -3.29461   CAACGCGCCGGAGAA              GGAGAT CGCC ATCTCC               GGCGTGGGCTACAAC  56 58
JRI60_RS41525 10444325 .. 10444361 -  -3.6  -3.90082   GACGAAACCACGAAA   CAGCCCATCGCCGAGGCC CAT GTCTTCGTCGA-GGGC-G   ACAGGTACAGCAACA  59 461
JRI60_RS41515 10441008 .. 10441049 - -18.8   -3.6692   GTCTACTCCAAAACA GTCGCCTCCTCCCGCGGCC CATCC GGACACGGGAGGAGG-GAC GACGCCACGAAGGCT  95 40
JRI60_RS41510 10439918 .. 10439929 -  -5.8  -3.64198   GCCTCAGAGAGAGAA                CTCG GCTC CGAG                 CGTGAGCCCCAGACG  57 2
JRI60_RS41505 10438094 .. 10438104 -  -8.2  -3.27475   GGGGCTAGTAGAAGA                 CGCG CTC CGCG                 CTCGACAGCAGCACG  58 4
JRI60_RS41500 NONE
JRI60_RS41495 10435161 .. 10435206 -  -3.8  -3.60792   GGTGGAACTGGCAAA GCGCCCGCCCTGCTACGAGA GGCAGG CCGAGTACCAGGGCAAGTGC TACATGCCGGTCTCG  53 113
JRI60_RS41485 10433391 .. 10433421 -   -14  -3.55444   CCTGCAGGCCTGAAA       CGACCCGGGGTC CTGCTTC GACCCCGGGTTG       CTCAGACTCCTCGCT  78 47
JRI60_RS41435 10419626 .. 10419660 -  -8.5  -2.70932   CCGCTTCGGGAACGA    CCCGGC-CACCTCGGT GCTG AACAAGGAGTGCCGGG     CGCACGAGGTGCCCA  51 221
JRI60_RS41420 NONE
JRI60_RS41415 NONE
JRI60_RS41410 NONE
JRI60_RS41405 10414104 .. 10414117 -  -2.3  -2.53876   TGTGACTCCAAGTGA               GAGAG AGAC CTCAC                GGGCGTGCGCGAGTA  38 22
JRI60_RS41400 10410995 .. 10411045 - -25.5  -4.56775   ACTTCCTCCGAAAAA CACGGGGGGCGCG-GGC-CCGGGGA AGG TCCCAGGAGCCTCGCGCCCCCCGCA TGAGAGCCCGTCTGG 100 49
JRI60_RS41395 10409261 .. 10409294 -  -3.7   -3.7941   GAGGCGGGAGAAGAA     CGGCGCGCGCACG CTCGTCCT CATGGACCCGCCG      ATGGCCGGCACCGAG  56 170
JRI60_RS41380 10403149 .. 10403173 - -15.8  -2.75992   GTGGAGCGAAGACGA          GGGGAACCTC GCGCG GAGGTTCCCC          AAGCTCTGGGCTCGA  72 66
JRI60_RS41365 10399607 .. 10399620 -  -5.9  -3.28712   GGCGCTCGGGTACAA               GGCGG CCCT CCACC                TGTCCGAGCTGGACG  51 367
JRI60_RS41340 10393765 .. 10393781 -  -8.7  -3.65046   GGCCGAGTTCAAGAA              GCTCATC GTC GACGAGC              TGCGCCGCTACCCCG  64 224
        proB 10390341 .. 10390355 -  -5.6  -3.28791   ACCCGGGCCTCACAA               GACGGC CAG GTCGTC               CCGGTGCACGGCCTC  51 5
JRI60_RS41315 NONE
JRI60_RS41310 NONE
JRI60_RS41305 10385904 .. 10385915 -  -5.8  -3.54459   CCAAGGCGGTTGAAA                CGTC AGCT GACG                 GACAGCTTCGCTACA  54 36
JRI60_RS41300 10384076 .. 10384087 -  -3.6   -2.8655   GCCACTCACACGAGA                GGAG TTCG CCCC                 TTTCGGCGACGTCAT  42 496
JRI60_RS41290 NONE
JRI60_RS41285 10382329 .. 10382360 -  -7.2  -3.14564   CGACGCGTTGAGCAA      GGACGCCATCAAGG CCAT CACCGATGGCGTCG       TCGCGCGCATGTCCG  54 382
         acs 10376439 .. 10376478 -  -7.6  -3.28924   CAGCTCCGGCGACAA  GTTCCCCGGGCCCGCCCT CGTC AGGGCGGGCCCTCCCTAC   CCGAGCCTCAGCGCC  56 33
JRI60_RS41260 NONE
JRI60_RS41255 NONE
JRI60_RS41250 10373474 .. 10373492 -  -5.8  -3.82083   TGAGGAGAAGCGAAA             CGCGGTCC GAA GGCCCTCG             TAGCCTGATGCTTGT  60 369
JRI60_RS41245 NONE
JRI60_RS41240 10370818 .. 10370832 -  -5.6  -3.89695   GCTGGAGAAATACAA               TCCGGG CGA CCTGGA               GCTGATCCACGCCGT  63 189
JRI60_RS41230 10368697 .. 10368739 -  -9.1  -2.52464   CGCTCTCGGAATGCA GCTCACCTCCACGATGACGG TGAT CCGTC-TCGGAGACGGGAGC CTGCTCCTCCATTCG  50 395
JRI60_RS41220 10367755 .. 10367765 -  -3.2  -3.44146   GGGCCCCAGAATCAA                 CTCA ACG CGAG                 GGTGGCCGTCTCCAC  48 191
JRI60_RS41215 10366790 .. 10366835 - -12.7  -3.03214   AATCGAGCATACAGA CAGTGCTGAT-CGTGTCCATGT TCA ACGTGGACACGAAGCATCACTG GCGTCTGGGCGAGCA  66 350
JRI60_RS41205 10364079 .. 10364093 -  -2.8  -2.78438   GACCAGACCGGAAAC               GTGG GCCTCTA CCAC               ACTTCCCACCCGGTA  40 88
JRI60_RS41200 10362968 .. 10362988 - -14.1  -3.14132   CGCGCTCGGGAGCAA            CTGGTCTGA CTG TCAGACCAG            TTCGTCCGGACCGCG  73 125
JRI60_RS41185 NONE
JRI60_RS41180 10358969 .. 10359009 -  -3.8  -3.77196   CGAGCAGGCAGGAAA CGGCGGATGGGCGCCCCGG CAGG CCCGTAC-CCGATACGCCG  GAGCGCAAGGACGGC  57 59
        fabG 10357313 .. 10357334 -  -5.1  -3.06183   TCCAGCCCGAGGGAA           TGAGC-CTCC CAG GGAGCGCTCC           CGTCATCGGCCTCCC  47 103
JRI60_RS41165 10354831 .. 10354862 -  -5.9  -3.28712   GCTGTGCCTCCAGAA     CCTGCGCCGCGCCGAG GGC CCCG-C-CGGC-CAGG     TGACGCGTACCCGGG  51 136
JRI60_RS41150 10345012 .. 10345024 -  -4.8  -3.02043   AAGGCGTCCGGAACA                CGGT TCGAC ACCG                CTCGACATGTCGAGA  45 425
        ligD 10340528 .. 10340550 -  -4.7  -3.89614   TCGAATCTTGAGAAA           CGGAGGTGC CTCGC GCGCGTCCG           AGCCTACCGCCGACG  61 29
JRI60_RS41130 10339183 .. 10339206 -  -3.7  -3.46602   GGTTCCAGAGGAGAA          CGGATGGGG GACTTT CACCGTCCG           TCCGGGTCGACCGGC  49 51
        acnA 10336016 .. 10336033 -  -9.1  -2.78216   CAGGCTCATGAACGA             TCCGGAG CAAA CCCCGGA              AGAGCCGATGAACGC  55 340
JRI60_RS41120 10335101 .. 10335159 -  -5.1  -3.17212   GGAGCACCTGACGAA GCGCGAGGGCGAGACGTAC-GAGGCCTTC ATC GAGCGCGTCCGT-CCCCACGCGCTCGCGC GCCGGGTGAAGCTGG  49 173
JRI60_RS41105 10329915 .. 10329935 - -10.3  -2.70932   GCGGTTCGCGAAGTA            GGGAGGCGC ACC GCGCGCCCC            CTCGCTCAGAACTGG  57 31
JRI60_RS41095 10328596 .. 10328623 -  -5.4  -2.80816   CTTCGATGCACGAGA        GCCCGGAAGCGA TTCG CCGCGTGCGAGC         AGCGTCCCACCCATC  46 114
JRI60_RS41090 10327718 .. 10327732 -  -9.2  -3.05384   CGCTCGCTGATGGAA               CGGACG AGC CGCCCG               TTGGGTCTACGCCTC  57 154
JRI60_RS41085 NONE
        dbpA 10324842 .. 10324858 -  -4.3  -4.11281   GAGGACAATCAGAAA              CAGAGCC CTC GACCCCG              CCCACTGCGGAGGAC  62 119
JRI60_RS41075 NONE
JRI60_RS41070 10322814 .. 10322825 -  -5.8  -3.31792   GGAGCAGCTGGAGAA                TGCC ACGA GGCA                 GGTGGACGCGCGGCT  51 405
JRI60_RS41050 10319717 .. 10319731 -  -2.8  -3.35996   CATCTCGAGGCAGAA               CGTC GTCGAGG GACG               GTTGTTGGTCCAGGC  45 81
JRI60_RS41040 NONE
JRI60_RS41035 10316596 .. 10316615 -  -2.8  -3.71848   CGCCGCCATGAACAA            CCTCATCG ATCG CGATGACA             TCCGGCCCCGGCTGA  51 261
        purU 10312269 .. 10312279 -  -3.2  -3.38991   ACGCGCTCAAGAAGA                 TGCC GAG AGCA                 CGAGGGCTGCCGATC  47 274
JRI60_RS40995 10309778 .. 10309800 -  -7.7  -3.40403   CCCGGCCCACGACAA          GGA-GCGCCA CACC CGGCGCATCC           TCACCCTGCTGCGCG  55 352
JRI60_RS40980 10307109 .. 10307138 -  -5.7  -2.80074   CCGCGCACAACACCA       CCGCCGCCA AAGGAGCTGTCA TGGCGGCGA        TTACTAGGGACGCGA  45 51
        glmU 10305683 .. 10305705 -  -2.7  -4.04174   CGGGAGACAAGCAAA          TC-GCGGG CCGACTAC CCCGCCGA           GGCCTTGTCCGACTT  59 14
        glmS 10303681 .. 10303718 - -18.6  -2.90496   TGGCGGTGGAAACGA  CAACGCCCGGGG--GCCT CGAA AGGCATCCCCGGGCGTTG   ATGAGGACCGAGCTG  89 59
JRI60_RS40945 10296360 .. 10296382 -  -6.1  -2.62263   ATCCCTCTGACATGA           CCCACGGCG TTCAG CGCCGAGGC           AGCAAGAGGAGCAGC  46 13
        recA 10295109 .. 10295138 - -22.9  -3.44844   AGGACACAATAGTAA       GGGGCCGTCCCCC TCGC GGGAGACGGCCCC        TGGGTACTTCAGGCA 100 54
JRI60_RS40935 10292655 .. 10292667 -  -9.1  -3.55563   AGCGTACGTGCCAAA                GCCCT ACG AGGGC                TCACTGGTGCTGCTG  61 448
JRI60_RS40925 10265057 .. 10265089 - -20.6  -3.56092   CCAGGATGTGGGAAA      CGCAGCCCCCACGG CATGC CCGTGGAGGCCGCG      AGGTTCCAGCTAACA 100 94
JRI60_RS40920 10264252 .. 10264287 -  -4.6  -3.62046   GTACTGGGCGAAGAA    GCTGG-GCCGCGACGAC CTC GTGGTCACGGTGCCAGT    GGCGGCCGAGTACAT  55 459
JRI60_RS40905 NONE
JRI60_RS40900 10259446 .. 10259464 -  -5.9  -3.65224   AGCGGATTTGAAGAA             GCGCGTG GAAGA CACGTGC             GACCGCCTGAAGCTC  57 236
JRI60_RS40875 10253474 .. 10253484 -  -2.4  -4.06055   ACGTGTGAAAGCAAA                 GGTG ACG CCCC                 CTCCTAGGAAGTCAG  58 77
JRI60_RS40870 NONE
JRI60_RS40865 10249383 .. 10249422 -  -2.7  -2.99471   GCATGGCGACACACA  CCCTACACCACCCCACA CAAGAT TGCGAGTGGGTGGAAGG   GGGGCCAGCGGCAGC  42 63
JRI60_RS40860 10246996 .. 10247037 -  -9.9  -3.57971   AGACCCACCCTGAAA TCGTCACGGGTGCCGGGGG ACCG CGCCCGGCACCCCAGAGGG  TAGGTTTTACTCTCA  67 38
JRI60_RS40855 NONE
JRI60_RS40850 10243742 .. 10243759 -  -4.7  -3.05463   ATCCGCGCGACTTAA             CCCGCGC CACG GCGCCGA              CACCACCGCGACCCC  45 42
JRI60_RS40845 10242639 .. 10242665 - -10.9  -3.06133   GAACCTCGGATTGAA        CCCGTGAACCCC TCTT GAGGT-CACGGG         TTGGAGCACCGTGAC  62 93
JRI60_RS40830 NONE
JRI60_RS40825 NONE
JRI60_RS40820 NONE
JRI60_RS40815 NONE
        glgX 10232849 .. 10232884 -  -7.4  -3.84406   CCGCGATGAGAAGAA    GGCCAGGCTTCCGGCGC GGC ACTCCGGAGGAC-GGCC    TCGCCCGACCCGGGC  66 42
JRI60_RS40805 NONE
JRI60_RS40800 NONE
JRI60_RS40795 NONE
JRI60_RS40790 NONE
JRI60_RS40785 NONE
JRI60_RS40780 NONE
JRI60_RS40775 10228330 .. 10228358 - -13.9  -3.32022   CCCCGGAGACACGAA        GGGAGGTGACG GCTCGCT CGCCACCTCCC        TTTTCCAACCGCCCT  75 42
JRI60_RS40770 10226243 .. 10226261 -    -3  -2.78384   CCGTCCTCGAGGAGA             CCCCCGAG TCA CTCACGGA             CGTCGACGCCTACTT  40 324
JRI60_RS40750 NONE
JRI60_RS40745 NONE
JRI60_RS40740 NONE
        rsmB 10216975 .. 10216986 -  -5.8  -4.21439   CAAGCGGAAGACAAA                CAGC TCCT GCTG                 GTGGCAGAGGTGGGC  69 425
JRI60_RS40720 10213390 .. 10213420 -  -2.2  -3.02043   AACGCGCTCCGAACA       CCGCCCGCGCGCCG CTT CTGCCCGCCCGCGC       ACGCCTCCCTGGAGA  41 63
JRI60_RS40715 10212221 .. 10212245 -  -5.6  -2.70932   GTGCTCGCCCAACCA          CCCGTTCGCC ACCAA GGCGAAGGTG          AGCCTCACGGCGCTC  44 379
JRI60_RS40700 10209602 .. 10209660 -   -10  -2.75064   CGCGCGAGGCAAGGA GCAGGAGCAGCGCCAGGGAATCCAGTAC CAC GTCTCGGACGCGGCGGCGCTGCCCCGGC TCGGCGGCTTCGACC  54 469
JRI60_RS40680 10206400 .. 10206413 -  -2.3  -2.57881   CAATGCTGCCAGAAG               CGGCT CAGT AGGCG                TAGGTGGCCATGTCG  38 16
JRI60_RS40675 10204994 .. 10205004 -  -8.2  -3.05596   CACCCGCGGACGCAA                 CCGC TGC GCGG                 CCTCGCACCGGGCCG  55 96
JRI60_RS40670 NONE
JRI60_RS40665 10202107 .. 10202126 -  -5.6  -2.71144   CACCTGGGCGAAGGA            CGAGCCCCG TCC CGTGGC-CG            AGCACGTCCAGGTGC  44 505
JRI60_RS40655 10201001 .. 10201023 -  -3.2  -3.55444   CCGCCAGTCGCGAAA           GGCGGTGGCG ATG CCCGAGCGCC           TGCGTGAGGCGCTCG  50 67
JRI60_RS40635 10196633 .. 10196691 -  -7.3  -2.79023   CAACGCCATCAAGTA CGGGGCC-GGCAAGCCCATCCACGTCCTC GTC GAGCACGGGGACGACCGTGCCCGGCTCC- AGGTCCGGGATGAAG  49 259
JRI60_RS40625 10192306 .. 10192322 -  -4.3  -4.60949   GACAGCAGAAACAAA              CGAGAAG CGG CTCCACG              CATTCAGGCACCCCT  75 303
JRI60_RS40620 10190367 .. 10190387 -  -7.5  -3.61398   GGCTGCTCGCAAGAA            GCGCCGC TGGAAGC GCAGCGC            CAGCTGACTCGCGCT  61 347
JRI60_RS40595 10186914 .. 10186940 -  -4.5  -3.28712   TGGCCTTTTGTAGAA        CGGAGATCAGCTG AGG CAGCCGA-CT-CG        AGAGAGAGCCAGAGC  49 76
JRI60_RS40590 10186440 .. 10186456 -  -2.1  -3.28712   CGGCGCGGCCTACAA              CATCGAC GGT GGCGAAG              CGGGCTGAAGCAGGG  44 58
JRI60_RS40580 10185211 .. 10185228 -  -2.7  -2.52464   CGGGGGGTGAACGGA             TGGTG GCTTGTAT CACCA              TCAGAGGGGTTTGAA  39 26
JRI60_RS40575 10183922 .. 10183951 -  -6.4  -3.58343   TTGATGAGCCCTAAA       TCAGGAGTGACC GGGGAA GTCCACTCCCGA        GAAGCGTGCCTGTCG  56 79
JRI60_RS40570 NONE
JRI60_RS40565 10180711 .. 10180737 -  -6.4  -3.02144   GGAGCGTGCCGAAGA         CGCGCCCCTTGG CCA CCAACGGGAGGG         TGATGAAGGTCGGCG  49 510
JRI60_RS40560 10179302 .. 10179318 - -10.8  -3.25823   GTTGCTCGACAGGAA              CCGGGC TCAGG GCCCGG              CCACCGGCAGGGTGA  66 15
JRI60_RS40550 10174820 .. 10174877 - -16.9  -3.26449   CCTGAGACAACCCAA CCCCCATCCCCCACTCC-TCCCTCTCCC ACT GGGAGAGGGTCGGGGTGAGGGTCTGGAG TGCCCCAGGTTGCCC  86 55
JRI60_RS40540 10172770 .. 10172793 -  -9.5  -3.02043   AATTTTCTTCCAACA          GGCCGCTGC CTCCCT GTAGCGGCC           TGCCTCCCGCGCGAC  57 51
JRI60_RS40535 10172246 .. 10172294 - -10.8  -4.09243   GAGATTTCGGCAAAA GGACTAGC-GCTCCCCGAGGCGG GTGC CCGCCTCGTGGCTCTGCTCGACC GCTGAGCGCCAGCCC  81 61
JRI60_RS40510 10167865 .. 10167885 -  -6.7  -2.92389   CAACCGAGTGACAGA            GCACGGGGG GAA CCCGAGTGC            TCCCGATACCCTCAC  50 138
JRI60_RS40485 NONE
JRI60_RS40475 10159246 .. 10159267 -  -2.9  -2.95774   GAGAGGGAGCAGACA           CGGGCTC GACCCTAG GAGCGCG            ATACCCTCACCCCGA  42 76
JRI60_RS40470 NONE
JRI60_RS40465 NONE
JRI60_RS40460 10157598 .. 10157615 -  -7.7  -3.53012   CGCGCCCCCCTGAAA             CTCAGGCC GAG GGCCTG-G             TGGCCGGCGCCGCGG  60 9
JRI60_RS40455 10156795 .. 10156805 -  -6.8  -3.85698   GGGCTCTCCGAGAAA                 CCAC CCC GTGG                 GCTACCGCACCACGA  64 27
JRI60_RS40450 10155633 .. 10155664 -  -2.9  -3.72241   CAGCAAGGACGCAAA      CTACCCCAGGG GTCTGACATG CCCCGGGGCAT       CCCCGACGGTGGACC  53 203
JRI60_RS40445 10155138 .. 10155191 - -22.3  -4.36914   CCCTGGGGCAGAAAA CGGCGGCGCGGCGAGCCAAGCCCCC GAGA AGGAGCCCGACCCGCCGCGCCGAGG CGGCCCGCGCACGGG 100 57
JRI60_RS40440 NONE
JRI60_RS40435 10152858 .. 10152876 -  -2.3  -3.72893   GAGCCCCGTACCAAA             CACGACC AACGG GACCGCG             ACCAGGACGAACGCC  51 107
JRI60_RS40430 10151863 .. 10151879 -  -5.1  -3.31144   TGCGCACCCGCATAA              CCTCCAC TGG ATGGAAG              CCCTCGAGTCCCGTG  51 347
JRI60_RS40425 NONE
        priA NONE
JRI60_RS40415 10143988 .. 10144045 -  -5.6  -3.66018   CGATTACGGGAAGAA GACGGCGACGCTGCTGGGCACACCGACCC TGC GGATCGGCG-GAC-AGGAG-GTGGCCATC CAGGGGCTGGAACAG  57 512
JRI60_RS40405 10142558 .. 10142581 -  -7.4  -3.36327   CCAGTGTACGGACAA          GCGGGTG-AAC ATG GTGACACCCGC          CCTCTTCCAGCGATT  59 496
JRI60_RS40395 10141321 .. 10141331 -  -8.2  -3.95153   GGAATCAGCCAGAAA                 CCGC CCG GCGG                 ATGCGCACCAGGGCC  70 4
JRI60_RS40390 10139826 .. 10139872 -  -9.3  -2.64155   GCTCCGTCAAATTCA TCGCGATTCGCGCGGAGGCCGA TCTA CCGGCCTCCGGGCGGTT-GCCA GCATTGACAGACAAA  54 398
JRI60_RS40380 10138000 .. 10138018 -  -2.3  -3.80733   CTCACCGGACAAGAA            GCTGCACG TCTT CG-GCTGC             GAGCGGGGGGACAAG  55 182
        pssA NONE
JRI60_RS40365 NONE
JRI60_RS40360 NONE
JRI60_RS40355 10132511 .. 10132521 -  -6.8  -3.28712   GGGGCTGGTGGACAA                 GGCT GGC AGCC                 ACTTCAGCCTGCGGG  53 195
JRI60_RS40340 10128674 .. 10128686 -  -5.5  -3.12351   CGGGCGGAGATGCAA                GTGCC TGG AGCAC                CGGGTCTTCGACTAT  49 498
JRI60_RS40330 10126603 .. 10126615 -  -4.8  -3.14564   CGAGCTGTGGATGAA                CGAG GTCGG CTCG                CTGCCCACGTTCACC  47 127
JRI60_RS40300 NONE
JRI60_RS40295 10119138 .. 10119194 - -20.9  -3.87869   TCAACCGTGCATAAA CACCGCGGCCCCGCGCTGCCACTCCC GCGTGG GGGAGGAGCAAC-CGGGGCCGCGATT CAACCCCCGTCCGAG 100 68
JRI60_RS40290 10117517 .. 10117545 - -14.5  -2.94099   GCCTTCTAGCAGAGA        GCGGGCGGCCC GGGGCAA GGCCCGCCCGC        GCCAAGCGTCAGACG  73 34
JRI60_RS40285 10116284 .. 10116303 -  -6.4  -3.17146   CCGCCGGAGAAGAGA            TGCCGG-GG CAG CCACCAGCA            CAGGAGAAACCCGAG  51 265
JRI60_RS40270 NONE
JRI60_RS40265 10114060 .. 10114070 -  -8.2  -3.28712   GCTGCTCGGCTACAA                 CCGG GTG CCGG                 TGCGCGGGGAGGCGG  58 46
JRI60_RS40230 NONE
        gatC NONE
        gatA NONE
        gatB NONE
JRI60_RS40210 NONE
JRI60_RS40205 10096117 .. 10096139 -  -8.3  -3.15544   CCGGACGGGGATGAA           CCGGGAGGA GGATT CCCGCCCGG           AACAACTACAACGGG  56 31
JRI60_RS40200 NONE
JRI60_RS40195 10093497 .. 10093507 -  -2.4  -2.71364   CCACGTCGCCAAGCA                 CGCG CGG CTCG                 AGCCCAACGGCTCGC  39 403
JRI60_RS40185 NONE
JRI60_RS40180 NONE
JRI60_RS40175 NONE
JRI60_RS40170 NONE
JRI60_RS40165 NONE
JRI60_RS40160 NONE
JRI60_RS40155 NONE
JRI60_RS40150 10082777 .. 10082787 -  -8.2  -2.73364   GGCCGACCGGAACTA                 CCGC AAG GCGG                 ACCTCTACGGCGTCC  51 329
        rplU NONE
        rpmA 10075913 .. 10075935 - -14.1  -3.42395   CTCACGAGGCAAACA           GGGACCCGC TACGC GCGGGCCCC           TTCAGACGACGACGC  77 46
        obgE NONE
JRI60_RS40105 10073706 .. 10073720 -    -7   -2.9176   AACTGTACCTACAGA               CGGGCC CCC GGCCCC               TGCATTCAAGGCCTG  50 31
JRI60_RS40100 NONE
JRI60_RS40095 10071264 .. 10071281 -  -2.6   -3.5525   ACACAGGTGCGTAAA             GGGCAC ATCCTG GTGGCC              AGAATCCTTCTCGAT  48 138
JRI60_RS40090 10070831 .. 10070885 -  -5.6  -2.78816   CCATGGCGGACGAGA GCGCCAGCC-GCATGCGTGCCAGCATC TCTG GAGGC-GGCGCGCCTGTTGGC-GGCAC GAGGCAGCCATCCGT  45 131
JRI60_RS40085 NONE
JRI60_RS40080 NONE
JRI60_RS40075 10069027 .. 10069040 -  -3.8  -4.05004   CGAGCAGAACAAGAA               GCTG GTGGGG CAGC                GGATTGAGGTTCTGG  61 369
JRI60_RS40040 NONE
JRI60_RS40035 10060793 .. 10060807 -  -7.8  -3.29144   TGAGGCCGGCTACAA               CACCCC GCC GGAGTG               AGACCCCGTCCCGGC  56 5
JRI60_RS40020 NONE
JRI60_RS40015 10056335 .. 10056351 -  -4.3  -3.49475   CGGAGTCGGACACAA              CCCCTCC TGA GCAGGGA              ACAGCATCGGTTCCG  52 85
JRI60_RS40010 10054505 .. 10054518 -  -8.1  -3.70438   AAAGCAGGACGGAAA               TCCCG CCAG CGGGA                CGGAGCAGCCGTCAG  63 37
JRI60_RS40005 NONE
JRI60_RS40000 10053344 .. 10053360 -  -7.9  -2.70932   CTTCGTCGCCAACGA              CGCGGTC CAC GACGGCG              AGCTGTGGATGCTTC  49 106
JRI60_RS39955 NONE
JRI60_RS39950 NONE
JRI60_RS39945 10039267 .. 10039277 -  -2.4  -2.59686   GGAGATACGAAGCGA                 GGAG CGC CGCC                 GGGTCGTCCGCCCTC  38 57
JRI60_RS39940 10037596 .. 10037608 - -10.5  -3.03124   CCGGACCCGGCAACA                GGCCC GCC GGGCC                TCACCGGGCGACGTG  60 311
JRI60_RS39925 10034328 .. 10034363 - -10.2  -2.96395   ATGGAGCACCAGACA    CCCCGCGCGGCCACGG GTTC CCGCGAAGTCGCGGGG     CCTGCTCAATCCAGC  60 31
JRI60_RS39920 10032290 .. 10032304 -  -7.8  -2.82987   CGAACACGTACTACA               CGCGGT GCA ACCGCA               ACGGCATCACCTACG  49 189
JRI60_RS39910 10030304 .. 10030335 -  -5.7  -3.14344   GACCGTGCTCATCAA      CGGCCG-GCTCGCG GTGCA CGCGGGCGCGCCCA      TGCCCGAGTTGGGCC  49 73
JRI60_RS39900 NONE
JRI60_RS39895 10026393 .. 10026404 -  -7.2  -3.08133   CACTCACGGATCCAA                CGGC CCGT GCCG                 ATGCCCTACGCGAGG  52 449
JRI60_RS39870 10020049 .. 10020059 -  -4.6  -3.14132   GCCCCCCTCGAGGAA                 GAGG AAG CCCC                 CGCCGCCCCCGCCAG  47 90
JRI60_RS39860 10017127 .. 10017166 -  -4.9  -3.04263   ACCCCAGCCGCAAGA  CGCACCA-GCGCGTCGCC GAGCA GATGACGCCCCTGCTGCG  CGAGCTGCTCGGCTG  45 60
JRI60_RS39835 NONE
JRI60_RS39830 NONE
JRI60_RS39825 10009558 .. 10009568 -  -6.8  -3.64755   ACACATCGCCAACAA                 TGGC GCC GCCA                 GGAGCCCACACAACC  61 189
JRI60_RS39820 NONE
JRI60_RS39815 9973188 .. 9973232 -  -9.8  -2.78596   CACCCCTGCATGAGA CGG-GAGCTCCGCGCCGGCCAC CGT GAGGC-GGCCCGGCGCGCGCCG CTCTCCCGCGTCAGC  57 36
JRI60_RS39745 NONE
JRI60_RS39740 NONE
JRI60_RS39735 9967288 .. 9967302 -  -4.9  -3.70902   CTCTGGACATGGAAA               CCGCG TGCCT CACGG               CACCGTCAGCGGCCT  55 20
JRI60_RS39730 9966598 .. 9966635 -    -2  -3.60151   CTGTCGAAACGAGAA  TGAC-CGT-CGCG-GAGCC CTG GGCCCTCGCGAACGCGCGA  TCGACTAGCGCGCCC  48 76
JRI60_RS39725 9965714 .. 9965741 -  -9.1   -4.6575   AGAGAAACCACAAAA        GGCGCA-CGGGG GCGAG CCCCGCCACGCC        CGATGCCGCGAGAGG  86 42
JRI60_RS39720 NONE
JRI60_RS39715 9962556 .. 9962581 -  -7.5  -3.45023   GCACGACGACGAGAA         GGATCCCGCCC TCAC GGAGGAGATCC          GCGCCATCCTCCATC  58 419
JRI60_RS39680 9955820 .. 9955838 - -11.6  -3.28712   CCCCGCTGGCCAGAA             GCGGGCAG CCG CGGCCCGC             AAGAACACGCGGGCC  67 312
JRI60_RS39665 9954052 .. 9954097 -  -8.9  -3.44274   GAACCAGAAGACGAA GTGCATGCTC-CGCGCGCGAGC TAG GATGGAGCGCGTGAGCACGGAC CATCCCGAGGACAGT  61 298
JRI60_RS39655 9953261 .. 9953284 -    -3  -3.08522   GACCCAGCGGAAAAC          CCTACCAGGT GTAG ACCAGGTTGA           AGTCCGCTCCGGGAT  44 3
JRI60_RS39630 NONE
JRI60_RS39625 NONE
JRI60_RS39620 9942166 .. 9942185 -  -3.4  -3.54424   TCCCAGGGCGCCAAA            CCTGTCCC CCAC GGCCCAGG             CCCCCGGCCTGACCG  50 351
JRI60_RS39590 NONE
JRI60_RS39585 9931983 .. 9932003 -   -14  -3.28712   GGGCTCGCGCGAGAA            GACGCCGC TCAGG GCGGCGTC            GTGACACGCCGCCAT  75 184
JRI60_RS39580 9928528 .. 9928538 -  -4.6  -3.75738   CACCACCATCAAGAA                 GGCC GGC AGCC                 AGGAGGCCTTCCGCG  58 449
JRI60_RS39550 NONE
JRI60_RS39545 9921422 .. 9921432 -  -6.8  -3.13899   AAGCGGCGAGGAACA                 CCTG TCC CAGG                 TCCGGCAACGGGCGG  52 128
         add 9917783 .. 9917802 -  -4.8  -3.01712   CCCCGCCGGCCAACA            CTCCCGGC TCAG GCCGGCTG             CTTCACCGCCTGCGG  45 14
JRI60_RS39520 NONE
JRI60_RS39515 9913396 .. 9913412 -  -4.4  -3.82824   CATCATCGACAAGAA             CGTGGAG ATTC CTCC-CG              GGATGACCATCGGCT  58 192
JRI60_RS39505 9911205 .. 9911225 - -16.9  -3.53012   GGCCCTCGGGTTAAA            CCCTCTCCC CCT GGGAGAGGG            AGGGAGGGTAGGTGG  89 64
JRI60_RS39470 9901101 .. 9901133 - -20.7  -2.64155   CCCCCCTGAAATGCA      GAGGGCTCGCCAC ATGTGCG GTGGCGAGCCCTC      CAGGCCTTGCGGCCG  95 59
        treY NONE
        glgX 9895706 .. 9895726 - -12.5  -3.15999   GCTGGAGACAGCCAA            CCCCCCCGT ATA ACGGGCGGG            AGACCGGCAGTCGAC  69 73
JRI60_RS39455 9894678 .. 9894689 -  -7.2  -2.90685   AAGCCAAACGAACCA                GCCC GCGG GGGC                 TCAGGGGTTGGCGCC  50 26
        apaG NONE
        hemH 9892810 .. 9892828 -  -7.4  -3.65046   GGCCGAGCGGAAGAA             CCAGGTGA AGC TCACCTCG             CTCGCCCCCGCGGAG  63 351
JRI60_RS39430 9889697 .. 9889711 -  -2.7  -3.19192   CCCGAGCGAAGTCAA               GGCGG GCCGT CCGTC               ACCCGTGGCGGAAGC  44 24
JRI60_RS39425 NONE
JRI60_RS39420 NONE
JRI60_RS39415 NONE
JRI60_RS39410 9885177 .. 9885193 -  -4.3  -4.15044   GCCGCGGCGAAGAAA              CCCGAGT AGC ACCAGGG              CCCCTCAGCGCCCCC  62 30
JRI60_RS39390 NONE
JRI60_RS39385 9880100 .. 9880112 -  -3.3  -3.04144   TCTTCAGTCGCAATA                GTACG GCA CGAAC                GGGCCACTCACTCCG  42 1
JRI60_RS39380 9879212 .. 9879252 -  -5.2  -2.99947   GAAGCGCGAGACACA TCCAGGAGC-GCGGGAAGC CCAT GCTACCCGCCGCCGCAGGC  CTCTCCGTTCGTAAA  47 123
JRI60_RS39375 NONE
JRI60_RS39370 NONE
JRI60_RS39365 9876846 .. 9876897 -  -3.5  -2.89564   GCGGCACTGTACAGA CGTGCACCCGGCGAGGCAACGCGCG AGCG CTCTCCTT-CTCCGCCGGG-GCCCG GACGAGCGTCGTGAC  43 137
JRI60_RS39360 NONE
JRI60_RS39355 9872890 .. 9872906 - -10.9  -2.55213   GAGCGATGGAAGGCA              CCACTGT CCG ACAGTGG              AGTGGTCCAGAAGGG  59 78
JRI60_RS39350 9870908 .. 9870950 -  -6.1  -3.54424   GTCTACGCCGGGAAA GGGGTCAACGG-GCCCACCA TGTC CGGCGGGGTCCGGCGAGCCC GCCCCTCTCCAGGGG  56 66
JRI60_RS39345 9869829 .. 9869840 -  -7.2   -3.7941   CATGGCCTACAACAA                CCCG GCCA CGGG                 TGGACTGGACATGAC  65 498
JRI60_RS39330 9866959 .. 9866971 -  -6.2  -2.82623   CGTGGCCCACAACGA                GGCC GTCCG GGCC                GAGGAGGCACGCAAG  46 364
JRI60_RS39275 9854228 .. 9854276 -  -8.8  -3.02263   ACATCCGGGTGAACA CGGTGTGCC-CCGGCGTCATCGAC AAC GAC-ATGATGGCGGCGGCCCACCG GCGCATCGCGCCCGG  54 235
JRI60_RS39265 9851235 .. 9851264 -  -2.7  -3.21934   GGCGGCGGAGAAAAT       GCGGATTCGCATG GTGG CGCGCGAACCTAC        CAGCCCGGGGGCGTA  46 100
JRI60_RS39260 9848959 .. 9848988 - -16.4  -3.23899   CTTCAAGGAAGGGAA       CGGGCAGCCGGG AGTGCG CCCGGATGCCCG        CCCGTCCTGATTCAG  82 37
JRI60_RS39235 NONE
JRI60_RS39230 9843765 .. 9843779 -  -4.2  -2.62263   ACGTGGCCTACATCA               GCATGG TGG CCACAC               TGCCCTCGCACCGGC  41 226
JRI60_RS39210 9838236 .. 9838259 -  -7.4   -3.4252   CCCCACGCAGCAGAA          GCTGGACGCCA TCG TGGAGTCC-GC          CTGGCGCTGGATGCA  55 84
JRI60_RS39200 9836021 .. 9836033 -  -9.1  -3.59698   GTACCGGAGAGACAA                CCCTC GGG GAGGG                ATGTCACACGGTGGA  64 104
JRI60_RS39195 9834695 .. 9834728 -  -5.9  -3.53444   GCACGGTTTCGGAAA     CGGGACCGACACGTCG AAG CGACATGGCGA-CACG     CGGCCCATGGAGATG  53 379
JRI60_RS39185 9832501 .. 9832511 -  -8.2  -2.78463   AGCCCCGGGAGGACA                 GGCC GGT GGCC                 CAGGAGGCGAAGCGG  51 144
JRI60_RS39170 NONE
JRI60_RS39165 NONE
JRI60_RS39155 9824720 .. 9824734 -  -2.7  -4.17657   CATTACACCCCAAAA               CGCCG CTCCC CGGGG               TCACGCCGTGCGGAT  63 26
JRI60_RS39150 NONE
JRI60_RS39145 9822420 .. 9822436 -  -3.6  -3.04792   CCACCAGCTCCAACA              GGCGGT TCTGC ATCGCC              AGACGCGCTTCCACC  44 273
JRI60_RS39140 9820248 .. 9820261 -  -4.5  -4.02817   GGCCCAGAAGAAGAA               CCTCGC GAT GCG-GG               TGGAGCTCGAGACCG  63 496
JRI60_RS39130 9819344 .. 9819372 -  -5.7  -3.19602   TGTCGCATACGAAGA        CTTCCTGCCCGCG AGG CGCGGGCGCGTGG        GAGGAGGACAGCGGG  49 80
JRI60_RS39125 9817604 .. 9817614 -  -2.4  -3.61398   CCCTCCCCTGAACAA                 GCCC ACC GTGC                 CCGAGGGTGAGGAGT  51 125
JRI60_RS39115 9815864 .. 9815888 -  -2.8  -3.18264   CCGGTCATTCAGGAA         GAAGCGCA-GG CGTT CCATGGGCCTC          CCCTGGCCCCCAGGA  44 114
        xdhA NONE
        xdhB 9812027 .. 9812073 -  -2.1  -4.63218   GCTCGGCCAAGAAAA CCGAGCAGCGACCCACTGAAAC AAGC GCCT-ACCGCGCCGCGGCCCGG GCCAGCTCCACCGCG  70 7
JRI60_RS39080 NONE
JRI60_RS39075 9807930 .. 9807956 - -14.4  -3.79747   TGAGGGAGTAGCAAA         CTCCCCTCTCCC TCC GGGAGAGGGACG         GGGTGAGGGTGAGGG  83 60
JRI60_RS39060 9805462 .. 9805476 -  -8.6  -4.82901   CGGCCGCCATAAAAA               TGCAAC CGT GTTGCA               TAAGTAATCATGTCG  86 64
JRI60_RS39055 9803976 .. 9804002 -  -2.1   -2.9356   AGCCATACCTACACA         TGGCGGCGCAC TCTCG ACGACCCGCCA         TCCCGAAATCCACAG  40 181
JRI60_RS39050 NONE
JRI60_RS39045 NONE
JRI60_RS39040 NONE
JRI60_RS39035 NONE
JRI60_RS39030 9798709 .. 9798719 -  -4.6  -2.73994   AGGGGGCCAAGAGGA                 CGGC ATC GCCA                 CGACTCTAATCGAAC  43 128
JRI60_RS39025 9795389 .. 9795412 -  -5.3  -2.70932   GCTGTGGCGCAACGA         GCTGCTGCAGG ACGA CCTGC-GC-GC          CCTGCTCGGCCCGGG  44 493
JRI60_RS39005 NONE
JRI60_RS39000 9792211 .. 9792257 - -13.7  -2.54896   GCGGTAGGGAACGGA GCGCACGAGGCCGGACGGGGCGA GCA CCGCCTCGCCCGGCCT--TGCTC TATGTCGAGGCGGGC  69 25
JRI60_RS38980 9789343 .. 9789360 -  -4.7   -3.9281   AGCAGGGTGAAAGAA             GACGCCG TCAT CGCCGCC              CCTCGAGAAAGCCGA  61 15
JRI60_RS38975 9786536 .. 9786548 -  -4.1  -2.88544   TCCCACGTTGAGACA                CAAGA GCG TCTCG                TACCTGCGGCAGTAC  44 407
JRI60_RS38950 NONE
JRI60_RS38945 9781292 .. 9781318 -  -5.7  -2.70932   GGGCGCGGGGAAGGA         CTCCGCCAAGG TGGCT CCTCGTCGGGG         GGGGAGCCCGAGTAT  45 62
JRI60_RS38940 NONE
JRI60_RS38935 9778467 .. 9778488 -  -2.9  -3.35679   GTTCTCCATCCAGAA           CCCCATCGCG CCG CTCG-TGGAG           GCCGGTTCCCACCAA  45 156
JRI60_RS38915 9775011 .. 9775064 - -13.1  -3.68351   CGGTGAGGAGTGAAA CGAGGCGGATGCATTCCGCTCCTCA CCGG TGAGGAGCGGAACGAAGTGGCCTCC CACCGAAGCCCCGCT  79 40
JRI60_RS38900 9768258 .. 9768270 -  -4.7  -3.72576   GTGGGGGGGAGGAAA                CGGGC CTG GCACG                GCTTCCCGGACTCTA  55 73
JRI60_RS38895 NONE
JRI60_RS38890 NONE
JRI60_RS38885 9763992 .. 9764024 -  -3.4   -3.6761   GCTCTGGAACAAATA      CCCTCACCCT AGCCCTCTCCCAG AGGGAGAGGG      GACATCCACGGTGAA  53 48
JRI60_RS38860 9742937 .. 9742962 - -12.5  -3.16971   GGACGAGACATCCAA         CCCTGCTCACG CGAG CGCGAGCGGGG          CGATCTTGCTCTCGA  69 6
JRI60_RS38855 9741838 .. 9741882 -  -4.2  -2.90075   GCGGCGGCAACGACA GGGGGGTATCGGCGCTCGACCG CGG CAGTCTAGCGG-G-CACCCGCC AGGAAGACCAGGGCG  43 56
JRI60_RS38850 NONE
JRI60_RS38845 9738720 .. 9738753 - -13.1  -3.01791   ACCGGGCGGGCAAGA     CCCTCACCCCCCG CCCTCTCC CAGGGGGAGAGGG      CGCATGCGCAACCCG  70 45
JRI60_RS38835 9735840 .. 9735856 - -10.8  -3.01712   CGCGCTCCTTCAACA              CGCGCG CCTTC CGCGCG              CTGCTCGATGACCTG  60 104
JRI60_RS38815 9730101 .. 9730121 -    -6  -3.76224   CCCCCAGCCAGTAAA            GGCCGCGC CGGGT GCGCAGCA            CCTGCTCCAGGAACT  62 312
JRI60_RS38805 9729022 .. 9729039 -  -3.4  -4.19506   ACTCTAATTGCAAAA             CGCGTCC TCACC GGA-GCG             ATCAATTGCATCCAC  63 220
JRI60_RS38800 9728210 .. 9728244 -  -3.5  -3.64703   TCGTTTGGATCCAAA    TGCCAATACCGGTGCC GCCA GGTTCCCG-ATTGGCA     CTGAGCATCATCTGG  54 142
JRI60_RS38795 9725246 .. 9725260 -  -3.5  -3.21099   GTGGCCCAGTACGAA              GCAGGC CAGA GCC-GC               GCTCCCGCGGAGTTT  45 306
JRI60_RS38780 NONE
JRI60_RS38775 9721639 .. 9721654 -  -8.2  -2.78384   CGCGCTTGGAGCACA              GCAGGG CCGC CCCCGC               CGAGGAATCTCCATC  52 411
JRI60_RS38765 NONE
JRI60_RS38760 9717547 .. 9717573 -  -5.1  -3.29829   CATACCTTTCGAGAA        GGCGAGACCGTC TCGG GACAG-CTTGCC         TGGAAGCCCGGCATC  51 302
JRI60_RS38740 9714302 .. 9714331 - -12.9  -3.35679   GTGTCCGAGTGACAA       CCT-CCCCTCTCCC CCC GGGAGAGGGCCAGG       GTGAGGGTGCCTGCC  75 59
JRI60_RS38735 NONE
JRI60_RS38730 NONE
         mpl NONE
JRI60_RS38720 NONE
JRI60_RS38715 9709143 .. 9709192 - -12.3  -3.14132   CGGCGGTCTCACCAA GCTGGCC-TC-GCCCAACGGCACC CACGT GGCGC-GTCAGGCCGAGGGCCAGC AGCAGAAGATCCGCG  65 134
JRI60_RS38650 9693555 .. 9693590 -    -3  -3.06183   GGGAGCGGGAGGCAA    CGGCTCCTCCTCCCCG CACG CGGTGGCGAGCAGCAG     ACACAGCGCGGACGC  42 61
JRI60_RS38645 NONE
JRI60_RS38640 9689486 .. 9689498 -  -6.2  -3.78934   CTGCCGGGACAACAA                GCGC GACGA GCGC                GTCCTGTGCGTGGTG  62 392
JRI60_RS38615 9684931 .. 9684958 - -17.1  -2.70932   CGTTCTTGTGAAGGA        GCCGGGTCTTC TGAAAG GAAGACCCGGC         TCCTTCTTTTTTTTG  80 46
JRI60_RS38565 NONE
JRI60_RS38560 NONE
JRI60_RS38555 9674490 .. 9674502 -  -4.7  -3.28924   GATCCTCCGGGAGAA                GGCGC TCG GCCCC                AGTCACCTCCTGGTG  49 423
JRI60_RS38545 9670631 .. 9670646 -  -4.6  -4.25104   CCGGCTCGACGAAAA              GGCGCT GAAC AGCGAC               AAGGAGCTCCTCTCG  67 230
JRI60_RS38535 9668622 .. 9668636 -  -2.1  -3.40403   CGGGCTCTACCAGAA              GA-CGC CCTG GCGCTC               CTTGAGTCCCTGGTT  46 2
JRI60_RS38530 9667353 .. 9667390 - -20.6  -6.06723   TGCCCTAAAAAAAAA   CCGCCCACCGCCTCGG GGCCGG CCGAAGCGGTGGGCGT    CGGAGGCTCCCCAAT 100 286
JRI60_RS38520 9663342 .. 9663370 -   -11  -2.58272   GAGAGCAGGAAGGCA        TTGCCGCCCATG ATGCG CATGAGCGGCAG        GGGCGGCAGCTCGGG  59 60
JRI60_RS38515 9662880 .. 9662892 -  -3.3  -3.01712   CTGGGCGGCTCAACA                CGGCT GCG AGCTG                ATGTGTGCCGCGACG  43 162
JRI60_RS38485 9653415 .. 9653426 -  -5.8  -3.18681   CCTCAACTGGAGGAA                CGCA ATGC TGCG                 AGACATGTTGCTCAA  49 281
JRI60_RS38475 NONE
JRI60_RS38470 9650461 .. 9650490 -  -4.9  -2.79501   TAGAGCGCGAGGACA       CCAGCGACAGCCGA AGC TCGGG-GCCGGTGG       ATACGGCGGGGTCAT  43 37
JRI60_RS38465 9649949 .. 9649971 - -13.4  -2.87132   GGCGTTCGCCACAGA           TGGCGGTCAG TCG CTGACCGCCC           GCACGAGCCGGATGC  69 9
JRI60_RS38460 9649505 .. 9649515 -  -3.2  -2.93723   TGCCGACGAAGGACA                 CCGT CTC ACAG                 GGTGCTGCCAGTTTC  41 20
JRI60_RS38455 9648842 .. 9648856 -    -7  -3.42366   TCGAAAAGCTGACAA               CGGGGC TCG GCTCCG               ACGGGTACCGCTGGA  53 78
JRI60_RS38445 9647138 .. 9647155 -  -3.4  -3.72576   CCGCTGGCCACGAAA             CGACGA CGGGAC TCATCG              GCAACGGCATGTGGT  53 515
JRI60_RS38430 9643851 .. 9643873 -  -3.2  -3.12351   GGGGTTCAGAGGGAA           GCTCCGGGGC CAC GACCGGGAGA           TCGCGCGCGCCCTTG  44 242
JRI60_RS38425 NONE
        thiS 9642633 .. 9642659 -    -5  -3.21276   CGGTTCCGTAGAAGA         CCGGCATCGG CTCAGCC CCCCTGCCGG         GGCGTCACGATCTCC  47 10
JRI60_RS38415 NONE
JRI60_RS38410 NONE
JRI60_RS38405 9639933 .. 9639948 -  -3.2   -3.9461   GCTGCGCAACAACAA              CACCGA GCTG TGGGTG               GGAATGGCCATCTGG  59 391
JRI60_RS38395 9637531 .. 9637582 - -11.6   -3.0814   ACGGATACGGGAACA GGGCC-CCGC-TGAGCCTGCCCCC CACAGC GGGGGCAGGCTCACACGTCAGTCC AATCGCGGCGTCGGT  66 57
JRI60_RS38390 9636579 .. 9636612 -  -2.3  -3.99592   ACCCACGAGGAGAAA     CAC-CTGCAGGACAGG CTC CTCGCCCTGCATCGCG     ACGCGCGGCCACCGT  57 117
JRI60_RS38370 NONE
JRI60_RS38365 9629816 .. 9629835 -  -2.8   -3.7282   GGACGTCATGAACAA            GCAGATCA TCTT CAACCTGC             CGGTCAAGGACCTGG  55 415
JRI60_RS38350 9627876 .. 9627910 -  -3.4  -3.40907   TGATATCAAGATCAA     GCTGCTGGACATCGAG CTG CTCACCATCCAGGTGC     GTCTGGTGGTGTGCT  47 235
JRI60_RS38295 9619859 .. 9619882 -    -3  -3.11118   AGAAGCCACCCAACA          CCGCGCCG CACCCGAC CCGCACGG           ATAGGATCTGGCGGT  44 114
JRI60_RS38290 NONE
JRI60_RS38285 9619078 .. 9619099 -  -3.5  -4.03888   CAGGGACAACAAGAA           GGCCAAGGG AGCG CGCACGGCC            ATCGAGCCCTGTGAC  61 431
JRI60_RS38245 NONE
JRI60_RS38240 9609914 .. 9609947 -  -3.5   -3.9122   GAGGGTGTCAAAGAA     GGCGGACGTGCCCCG TGCT CGGGCCTCGGCATCC      ACCTGCTCCACCAGA  59 84
JRI60_RS38235 9608230 .. 9608248 -  -4.5  -3.78934   GCCTGGGGAGAACAA             GTGGATC GGCTT GATCCTC             GTGGGGATCATGGGG  58 113
        trxB NONE
JRI60_RS38190 NONE
        moaC 9595157 .. 9595172 -  -2.5  -4.27316   CGGGTCAAGGGAAAA              TCCGC TGTAAG GCGAA               GTAGGAGCCCGCCTC  62 459
JRI60_RS38175 NONE
JRI60_RS38170 NONE
JRI60_RS38165 9592840 .. 9592861 -  -5.7   -4.3487   ACAGAGAATGGAAAA           CGAAAGGGC TCAG GCCCCCACG            AGCTGATCGCGGAGA  72 13
JRI60_RS38160 NONE
JRI60_RS38155 9590340 .. 9590350 -  -3.2  -3.05596   GACCTTCCTAGGTAA                 GAAC CGC GTCC                 CAGGAAGGACAGACG  42 137
JRI60_RS38150 NONE
JRI60_RS38145 NONE
JRI60_RS38140 NONE
JRI60_RS38135 9585980 .. 9585990 -  -2.4  -3.14132   CGTGGGCGGCACGAA                 CCTG GAT CCGG                 CGAAGGATGGCCACA  44 167
JRI60_RS38115 NONE
JRI60_RS38110 9580374 .. 9580387 -  -4.5  -3.01712   GCGGCGTCTTCAACA               TCGCG GGTC CGCAA                CCGCTGCCGCTGTCC  45 326
JRI60_RS38095 9577640 .. 9577661 - -13.7  -2.62616   GCATCTCCGACACCA           GCCTGCGGCC CGA GGCCGC-GGC           GGTGGAGGTGGTGCG  65 75
JRI60_RS38070 9572935 .. 9572987 - -15.5  -4.56597   CGTGCGCCGGAAAAA CCGA-GCGCCCGCGAGTACCGGCC CTCCCT GGCCGGCGCCCGCGAGCGCCTCAT CGCTCAACCTCATTG 100 67
JRI60_RS38055 NONE
JRI60_RS38050 9566137 .. 9566175 - -14.7  -2.62184   TGGGGCGGCACACTA  GCGGGGTT-GAGGGCG-GA GAT TCACGCCCTCCAACCCCTC  ACACCTTCTTGGAAT  71 50
JRI60_RS38045 9565308 .. 9565344 -  -3.5  -3.28791   AGGGCTGGTGGACAA    GGCGCCCGCGCTGTC GATGCGG GAGAGCGCGTTCGGC    AAGGACCTGGACGCC  47 324
JRI60_RS38035 NONE
        metH 9559885 .. 9559910 -    -4  -3.28712   CTGGTGGGTGCAGAA        CGACGC-ACGCC TGGA GGCGCAGC-TCG         TCTCGCATGGACAGT  49 369
JRI60_RS38020 NONE
JRI60_RS38015 NONE
JRI60_RS38010 9556520 .. 9556541 -  -3.5  -3.32343   GGGATACCTGGAGAA           GCGCGGCAC GTTA GCCCAGCGC            GAGCACGGGCTCGCG  47 139
JRI60_RS38005 9555623 .. 9555643 -  -3.2  -2.88212   AACGACCAGAGGACA           CCATCCGCG GTAC CGAGG-TGG            TAGCAGGTCCGCGGG  41 293
JRI60_RS37995 9553768 .. 9553784 -  -3.5  -3.05596   TACCGGGCCAGGGAA              GCGGTGG CTC CCCCAGC              CCGGCGCGCCGTCAG  44 68
JRI60_RS37990 9550986 .. 9551026 -  -3.7  -3.66908   CCCCTCCAAAAGGAA  TCGCCGCGTCCGGACACGA TCT CCGCTCCCGGACTCATCGC  CTGTCGCACTCGCTG  54 19
JRI60_RS37985 9549246 .. 9549284 - -20.2  -2.61383   ACCGCCATGCACAAG   GCCCTCGAGGCCGCCGTC ACC GCGGGCGCCCTCGAGGGC   TGAGCGCACTACTCG  95 34
JRI60_RS37970 9546269 .. 9546284 - -10.4  -2.64099   GTCTTCCACGAGAAG              CCAGGC CCCC GCCTGG               GCTCAGGCCACCTTC  57 28
JRI60_RS37965 9545615 .. 9545628 -  -2.3  -3.68222   CGCCAACCTGAAGAA               CGTGG AGCT CCAGG                GGGCCCGGTTGTCGG  51 181
JRI60_RS37945 9541474 .. 9541511 - -26.3  -2.78816   GGACTGTCCATGAGA   CGACGCCCGCGCCCCGA GCTT CCGGGACGCGGGCGCCG    GGCCCTACCTCGCTC 100 50
JRI60_RS37940 9541012 .. 9541030 - -11.6  -2.62184   CCTCGCCCCAGATGA             CGCGGGCC CTG GGCCGGCG             CATCGTCCTGGTGGG  61 96
JRI60_RS37930 9539507 .. 9539521 - -11.4  -3.27743   GAGCACCAAGCAATA               GGCAGG CCG CCTGCC               AACCCCCTGAAATGA  68 128
JRI60_RS37925 NONE
JRI60_RS37920 NONE
JRI60_RS37915 NONE
JRI60_RS37910 NONE
JRI60_RS37905 9531535 .. 9531572 - -26.3  -2.62263   ACTGGCCCGAGACGA   CGGGGCCCGCCATCGCC GCGT GGCGAGGACGGGCCCCG    GGGTGCGTCTCGGTC 100 47
JRI60_RS37900 NONE
JRI60_RS37895 9528787 .. 9528841 -  -6.2  -3.62046   CGAGCTGTGCAACAA CTGCACGCACTGCGTGGACTGCAAGC AGT GCCACCAGTGCGCCTACTGCGTGCAG AGCGAGAACTGCACC  59 221
JRI60_RS37880 9525682 .. 9525701 -  -2.8  -3.31144   GGTCCACCCTGAGAA            CTTCCAAG CTGG CCCGGAAA             GGCCGACCGTCTTAG  46 76
        rplM 9525155 .. 9525170 -  -2.4  -3.75897   AAGTGGGAAGGGAAA              GGAGCG CTTA CGCCTC               GACCTCGCGCGCCAC  54 17
        rpsI 9524641 .. 9524680 -   -20  -2.72511   CCCAGGCCCGCAAAG  CACGACGGCGGAGGCTCC CGAA GGAACCCCCGCCGCGGTG   GTACTCCCAGCGAAA  95 55
JRI60_RS37865 9522824 .. 9522855 -   -13  -2.71681   GAAGGCGGCGAAGGA      CGACGCGGA-GCGGA ACA CCCGCGCCCGCATCG      CCCGGGCCCTGGTGG  63 322
JRI60_RS37855 NONE
JRI60_RS37850 NONE
JRI60_RS37845 9520281 .. 9520306 -  -3.2  -2.82623   CCCCGCTGAGAACGA         CGGCCTAGACT ACATG AGACC-GGCCG         AAAACAAGAATTCCT  41 9
JRI60_RS37840 NONE
        selD 9518032 .. 9518042 -  -2.4  -3.14468   GCGCACCACAGCGAA                 TCCG CCC CGGC                 GCCCTCCCCCTCCCC  42 49
JRI60_RS37830 9517124 .. 9517176 -  -9.9  -3.05844   TCGGCTAGGGGAAGA CGCGCGCCTCTC-TACCAGAC-GCGG GGGC CCGCTGTCCGGCACGAGTG-CGCGCC AGTGTCAGGGCGTGG  60 30
         rph NONE
        rdgB 9515710 .. 9515726 -  -2.9  -3.86346   CTACGCCCCGATAAA              GTCCAGC ATT GTTGAAC              CATCCGGAACGGACG  56 68
JRI60_RS37815 NONE
JRI60_RS37810 9515450 .. 9515468 -  -5.8  -3.63515   CGTCATGGCGAACAA             CCGCCTTG AAA CGTGGCGG             CTTCCCTACCGTGGA  57 80
JRI60_RS37805 NONE
JRI60_RS37800 9514859 .. 9514892 - -11.7   -2.6155   CCGGTGAAGACGAAG     GGACGCTCCGCGGCCA CTT CGGCCAAGGAG-GTCC     GCCAGCCCGTGGTCG  59 398
JRI60_RS37790 9513639 .. 9513678 - -19.4  -4.63527   CCAGGACCCCAAAAA  GACACCGGGGCTCTCTCA TCGC TGAGAGAGCCCCGGTCTA   TGAGAGCGGAGGGAA 100 24
JRI60_RS37785 NONE
         tig 9512056 .. 9512066 -  -3.2  -3.42574   TGAAGGGCATGACAA                 CCTC GTG AAGG                 GTCTAAGGAGGATGA  48 45
        clpP 9511366 .. 9511413 - -14.8  -3.86015   CATCCGGCGCAGAAA GCAGAAGCCGGAGACGCGGTGCA GCA TTC-CCGCGGCTCCGGCCCGTGC ACTTCCCTTGAAACC  87 45
        clpX 9509762 .. 9509804 - -18.4  -3.27164   GAGCAGATAAGGCAA CGCCCCCGTTCGTCCCAC GAAAAGT GCGGGACTGACGGGGGCG TCCGTGAGGCGCGGT  93 165
JRI60_RS37765 9507552 .. 9507566 -  -8.5  -3.21395   ACGGTCTCTATAACA               CGGCC CCTCC GGCCG               CCGTTCCCCGCGTGA  56 107
         lon 9504943 .. 9504970 -   -22  -5.42259   CTACCGCGAAAAAAA        CGGGCCCCAGGG GAGT CCCCGGGGCCCG         CGATTCACTTCACCC 100 57
JRI60_RS37755 NONE
JRI60_RS37750 NONE
JRI60_RS37745 NONE
JRI60_RS37740 9500750 .. 9500793 -  -5.2  -2.56122   GGCCACGAGAAAACC GGGAGCGAGTGTCTG-CAC AGGGGAA GTGTCCGACCTTCGCCCCC TCCGCGCAACCGATT  44 58
JRI60_RS37735 NONE
JRI60_RS37730 NONE
        grxD NONE
JRI60_RS37720 NONE
JRI60_RS37715 9497588 .. 9497624 -  -7.2  -3.16039   AAGGAGCTCCAGGAA   GCCGGAGGCCACC-GCC GCGC GGCCGATGCGCTCCAGC    GGTACGCCGCCGCCC  54 87
JRI60_RS37705 9495528 .. 9495558 -  -7.5  -2.79183   GCGAGTCCTAGCACA      CCGGCGTCAGG-GG ACGA CCGCCCGACACCGC       TCCGAGGCGGTCAGG  51 1
JRI60_RS37700 9494926 .. 9494939 -  -3.8  -3.43944   ATGAGGAACGGACAA               GCTG CACCCC CAGC                CGCATGGGCTGAATC  49 55
JRI60_RS37695 NONE
JRI60_RS37690 9492311 .. 9492352 -  -2.8  -3.53012   CGCGGCCCCGTCAAA CCGTCACCGCGCTTGCGCGG AGTT CCGC-CTCGCGCGGTC-CGC AATGCTGCTCCACAC  49 278
JRI60_RS37685 NONE
JRI60_RS37680 NONE
JRI60_RS37665 NONE
JRI60_RS37660 9485130 .. 9485140 -  -4.6  -3.61398   GGGCTCCTGGAAGAA                 GGGC GTC ACCC                 AACCCTTCCTCGTGA  55 336
        hppD NONE
JRI60_RS37600 9431927 .. 9431966 - -22.2  -2.76189   TAATCCATCGAAGCA  CCGGCCTCCGCGCGCCC GAGGAAA GGACGCGCGG-GGCCGG  AGTCCTCGGAGGCTC 100 39
JRI60_RS37580 NONE
JRI60_RS37575 9427245 .. 9427260 -  -7.6  -3.29144   GGAGTGCGCGTAGAA              GAGCAT TCTC ATGCTC               GCGCCCTTTAACGCC  56 63
JRI60_RS37570 9426412 .. 9426430 -  -8.1  -3.75378   AGCTCGAGAAGACAA             CCCGCCT GTTCA AGGCGAG             GTACGAGATCGGTAC  65 447
JRI60_RS37555 9424522 .. 9424534 -  -4.8  -3.27994   GGAATCGTAGAGGAA                CGTG CCGCT CACG                TGTCGCCTCGCTCTC  49 41
JRI60_RS37550 NONE
JRI60_RS37545 NONE
JRI60_RS37540 NONE
        nrfD NONE
JRI60_RS37530 9418255 .. 9418273 -  -4.4  -3.04144   CGCCGATTCCGAAGA             GGAGCCGC TTC ACGACGCC             ACCTCCATCTGCTCC  45 16
JRI60_RS37525 NONE
JRI60_RS37520 9416391 .. 9416430 -   -23  -3.81488   TCCCTCCAAAGACAA  CGGGCCGAGGTCACCG GAGGAGGA CGGTGACCTCGGCCCA   TGAACCTCGCGCACT 100 127
JRI60_RS37515 9414229 .. 9414251 -  -2.6  -2.81642   AGAGCAGGTAGTAGA           CGTTGCGG ACGGGAA CCACGACG           CCTCAGTCCTCGAGG  40 28
JRI60_RS37510 NONE
JRI60_RS37505 9410303 .. 9410352 -  -2.2  -3.80651   AATTAAAAAAAGACA TCCTCTCGGAAATGAATGGCT TCTCGCGTC ATCCATTCCCTTCCG-GCGGA ATCATCAAGGAATCA  54 97
JRI60_RS37500 9407443 .. 9407478 - -28.4  -4.32857   CCCCGGAAACACAAA    GCCCCGGGCGCGGCGCA GGG TGCGCCG-GCCCGGGGC    CTCTACTGCTTGGAA 100 47
JRI60_RS37495 9400166 .. 9400208 - -18.5  -4.07568   TCGCCTGTCCGAAAA GACAACGCGCTGGCG-GGAG TGAG CCCCTCGCCAGCGCGTCCTC ATCTACCTGCTCGTC 100 98
JRI60_RS37490 9399714 .. 9399727 -  -2.4  -4.09685   CGCGACCCGGGAAAA               GTTG TAGATG CAAC                ATTCCTCGGTGGACA  58 54
JRI60_RS37485 9396562 .. 9396590 - -20.3  -3.06696   CCTCCTCGCAACACA        CGGGGGCCGCG CTGTCGT CGCGGCCCCCG        TTTCATTCACATGCG 100 55
JRI60_RS37470 NONE
JRI60_RS37465 NONE
        ccoN 9388413 .. 9388425 -  -3.3  -2.62263   ATTGTTTCCACATCA                GGGAG TCC CTCCG                GCCGAGGCCGTCTCG  39 10
JRI60_RS37455 NONE
JRI60_RS37450 NONE
        ccoG NONE
        hemN NONE
JRI60_RS37435 NONE
JRI60_RS37430 NONE
JRI60_RS37425 9379606 .. 9379635 - -16.4  -3.32343   TCCACACCGCCAGAA       GGCGCCGGGGGT GAACAG AGCCCCGGCGCC        CACCCACTTCCTACC  82 36
JRI60_RS37420 9378681 .. 9378709 - -11.7  -3.19602   GCTGCCACAGGAAGA        GGACCACGCCC TGGTGGT GGGCGTGCTCC        GCGAGTGGTTGGCGG  65 72
JRI60_RS37400 9372068 .. 9372085 -  -8.3  -3.72576   CGCGCGCTGATGAAA             CGGACGG GGCT CCGGCCG              GAGCAGCTCGTCTAC  64 249
JRI60_RS37385 9369163 .. 9369173 -  -4.6  -3.14564   GCACGCGGCGAGGAA                 CGCG GTG CGCA                 TCGTGGGAGGCCTGC  47 356
JRI60_RS37375 9362459 .. 9362513 -    -8  -2.87468   TCCGAGGACACGACA CAGAGGATATGTACCTCGGAGGTCAA GACCA CTGTCCTACG-GG-ACACATCCCCTG GCGGGCTCCTCGCTC  52 65
JRI60_RS37370 9360976 .. 9360988 -  -6.9  -3.56092   GGACCATTGGCTAAA                GGAGC CCT GCCCC                TGTTGTGTCAGCCGG  58 241
JRI60_RS37365 9359929 .. 9359949 -  -3.2  -2.88663   AGTCAGGGGTAGACA            CGACGGGA GACAA TCACGTCA            TCGAGGGGGGAGACG  41 18
JRI60_RS37345 9356541 .. 9356590 -  -5.6  -2.63596   GTTCATGGGAGATGA GCGATGTAGCAGCAGCGCGGCCGT TTTG ACAGCCACGCGCCCGCT-CG-CGC TCAGTCGGCGAAGTA  44 26
JRI60_RS37340 9356050 .. 9356071 -  -4.3  -2.90212   CGAGGATGCGAGACA           TGGACGAGG GCTC CCTAGGCCA            CGAGCCGGATGAGGA  44 18
JRI60_RS37335 9354837 .. 9354858 -  -9.3  -3.30243   ATCCAGTCGGGAGAA           GCCGGACGC GTGG GCGCACGGC            CCGTGGCACATCCCC  61 126
JRI60_RS37325 9352605 .. 9352627 -  -5.4  -3.16564   GGCCCACGGCATCAA           CGTCAACGCC CTG GGCTTCGCCG           GCTCGCTGCTCGTCA  49 116
JRI60_RS37300 9348431 .. 9348446 -  -4.6  -2.80699   CGCGAATGAAGACGA              GCGTCG GGAG CGAGGC               GGTACCCCTGGGAGA  43 92
JRI60_RS37295 9347183 .. 9347193 -  -2.4  -3.06915   AGGGACTTCATCGAA                 GGAC TCC GGCC                 TGGACGGCGAGTTGG  41 7
JRI60_RS37290 9345961 .. 9345974 -  -2.3  -2.57564   GGACGCCTTGAGAAT               GCGTG AAAT CACGA                GAGGCTCCCTTCAGT  38 36
JRI60_RS37285 9342830 .. 9342858 -  -8.1  -3.95378   CGACACGGGAAAGAA        TGGGAGCCGGC CCCCCTC ACCGGCTCGCA        TCATTTCAGGCGCAG  68 26
JRI60_RS37280 NONE
        bshC NONE
       bshB1 NONE
        bshA 9332868 .. 9332912 -  -6.3  -3.31461   CATCGAGTGGGAGAA GCTGCGCGTCTCCGTGCCGA TCACCG TCGACACGGCGGCGCAT-GC GCAGGCCAACATCCA  53 329
JRI60_RS37165 9314248 .. 9314262 -  -5.6  -3.44051   GCGCCACCAGGACAA               GGGGCA CGA TGGCCC               ACCACGTCCTCACCT  53 41
JRI60_RS37160 9313077 .. 9313092 -  -3.9  -3.53224   TACCTCCGGGCGAAA              CGGCC GCGCGA GGCCA               TCCCGCCCCTGGAGC  50 321
JRI60_RS37145 9307969 .. 9307979 -  -5.4  -4.11394   ACCCGACCGCGAAAA                 TAGG GTC CCTA                 GCGCTGCTCGAGGCC  64 23
JRI60_RS37140 NONE
JRI60_RS37135 9305870 .. 9305884 -  -4.2  -3.05463   ACGTCCTCCAGGGAA               TGATCC GCT GGAACA               TCTGAGCCGCACCCG  44 97
JRI60_RS37125 NONE
        pdxY 9298287 .. 9298301 -  -2.8  -3.71848   CTTCCGCACCAAGAA               CGCA CCCGAAC TGCG               GGACATCCAACTCGA  51 311
JRI60_RS37075 9286612 .. 9286625 -  -3.7  -3.10343   ACACCCATGAGCCAA               CCCCG GTAA CGGGT                CGCGTCCGGCCGAGC  45 44
JRI60_RS37070 9285985 .. 9286004 -  -8.5  -3.05384   GCGGCCCCGACCTAA            CACCCGG CGATAC CCGGGCG             CAACCGGAGGTGGCC  55 61
JRI60_RS37065 9285201 .. 9285247 - -14.5  -3.09492   TTCGGAAGGGGAAGA CCCTCCCCCC-A-GCCCTCTCCC AGC GGGAGAGGGAGTAGAGGGGAGTG AGCGCTCACGGAAGA  76 96
JRI60_RS37060 9283796 .. 9283807 -  -5.8   -3.1082   GATCCATCCAACACA                CTGG TGCT CCAG                 ACGGCGCTGACCGAG  47 438
JRI60_RS37050 9282344 .. 9282364 -    -9  -2.90075   CGTCGCTGAAGGAGA           CGCCGAAGC TGCT GCT-CGGCG            CGGCCGAGGACTTCT  53 145
JRI60_RS37030 9278755 .. 9278768 -  -3.7  -3.65201   GAACAGCCCGAAGAA               GCCGC CTTT GCGGA                GGACGCTTTGCTTCG  54 144
        hemE 9276180 .. 9276192 -  -3.3  -2.62396   CACGGGGTGACATCA                TCAGG TGC CCTGG                CGGAGCGCGATGCCG  39 13
JRI60_RS37005 NONE
JRI60_RS37000 9274931 .. 9274984 - -13.7  -3.29593   ACTCCAGAATCAACA CGGACACG-CCCCCTGGCTGCTCCCC CTC GGAGCGAGGTCAGGGAGCCGTGCCCG GCTGTTGAGCAGCCG  75 9
        fadI NONE
        fadJ 9271255 .. 9271290 - -16.2  -3.72893   GAGCCCGGGACGAAA    CCGGAGGGCAGGAGGAA CGA CTCC-CCTGCCCTCCCG    GTCCCCGGGGTCAGC  88 36
JRI60_RS36980 NONE
JRI60_RS36975 NONE
JRI60_RS36960 9264521 .. 9264540 - -10.7  -3.01708   CAAAGCCCATAGATA            CCGGGTG TTTCAG CACCCGG             GGCTTTCGCCCACCC  62 108
JRI60_RS36955 NONE
JRI60_RS36950 9261355 .. 9261388 - -18.2  -3.14944   TACGAGGAGATCCAA     CGC-CAGCTCGCGGG TCGTC CCCGCGAGCCGGGCG     AGGAAGGCTAGGACG  86 33
JRI60_RS36940 9259110 .. 9259125 -    -6  -3.26933   ATAGGAAGACGAACA              CGCGCG CTAC CGCTCG               CCCCAGTGGAGCTTC  53 16
JRI60_RS36935 9258258 .. 9258284 -    -3  -3.72324   CATCGCGACGAAGAA        GGA-AGACCAG GACGTA CTGGACTGTCC         GACCGTGGCGGCGCA  53 81
JRI60_RS36890 9245955 .. 9245983 -  -2.4  -3.65046   CCCGTACCTGAACAA       CCTA-GCAGTGGC CTCT GACACTGCACAAG        CGTTCCGTCCCGTGG  51 108
        recN 9244159 .. 9244190 -  -4.3  -2.78547   TTATCGGAGCAAGGA      GGCGTTGCACGTA CCTGAC TACGCACTGCGCC       GCAGCCTGCTCCGGG  43 12
JRI60_RS36880 9243294 .. 9243324 -  -5.2  -3.61517   AGTCCGGTGGAACAA       TTCCAGGCGCCCTC TCC GAGGGCGCCGCTCA       GGCGGACATCTGGAC  54 23
JRI60_RS36875 9242080 .. 9242107 - -14.9  -3.76413   CCTGAAAACGCGAAA        GGGGCGAGGGT TTTTCG ACCCTCACCCC         TGCCCTCTCCCAGAG  87 69
        secA 9237030 .. 9237068 -   -21  -3.65812   GCTTCTCTAACAGAA   CCACTCCGGGCGGTGCAA GCT TCGCAACGCCCGGTGTGG   GTCAATGAACGGCTG 100 58
        rpsB 9235846 .. 9235873 - -21.3  -4.68645   GATTGAAAACGAAAA        GCCGGGCGGCG ACCACG CGCCGCCCGGC         TAAACTTCTCGCGCC 100 62
         tsf 9234984 .. 9235002 -  -4.4  -3.14132   CCCGGCGGCGATCAA             CGCCCGAG TGT CTCCGCCG             TCCGCCAGTGGCCCC  47 135
JRI60_RS36845 NONE
         frr NONE
JRI60_RS36835 9232276 .. 9232329 -  -3.9   -3.3785   CGAAGCCATCTACAA TC-AGCTCAT-CGCCGCGGCGTTCAA GCGCA TCGT-CGCCGCCGCGGATGCGCTCGA TCCCGACGTGCTGGA  47 352
JRI60_RS36820 9230766 .. 9230796 - -21.2  -3.64049   GGAAGAACCCCCAAA       CCCACCCCTCTCCC CCT GGGAGAGGGACGGG       GTGAGGGTACCGGAG 100 41
JRI60_RS36800 9222726 .. 9222738 -  -7.7  -3.14564   CCAGGTGCTCATCAA                CGAGA CGC TCTCG                CGCCAGCGCGTCTTC  54 248
JRI60_RS36785 9219061 .. 9219086 -    -4  -3.67173   AGAAACTTTCAAGAA         TG-GGCGATGA GCACA TCAACGCCGCA         GTGCCGCCTCGTAGG  54 15
JRI60_RS36780 NONE
JRI60_RS36775 9216639 .. 9216677 -    -5  -2.80113   TACGAGCTGACGACA   CGGACGCGGTAGGGCAAG GAG CTCGCCGTCACGCGGCCC   TCCGCTCTTCGATGA  43 15
JRI60_RS36770 9215662 .. 9215672 -  -3.2  -2.56596   TTGCTCATGAAGCGA                 CCTC ATC GAAG                 CGGGCCCGCACCTCC  39 4
JRI60_RS36765 9215157 .. 9215167 -  -4.6  -2.77523   TCTTCACGAATACGA                 GCGA CCG CCGC                 CCAGGAGGCCGAGGA  43 3
JRI60_RS36760 NONE
JRI60_RS36755 9213747 .. 9213757 -  -3.2  -3.76373   TGGCCAATATGGAAA                 GCTA CGA CAGC                 GGGCGTACGTACGCC  56 16
JRI60_RS36750 9212238 .. 9212291 -  -3.9  -4.35116   CAGTCTACACCAAAA CCGCCCACAATGC-TTTATCAAAC GCTCCAA GTTTGATTTTCGCACTGTTGGCGG CGGTCAAGAGGAAGA  68 65
JRI60_RS36745 9210971 .. 9210997 -  -9.5  -3.36749   CATGCCCAAGACGAA        GAAGGACGTGCG CGTG CGCA-GCCCTTC         AGACCTCGGTGTCAA  61 220
JRI60_RS36735 9208069 .. 9208092 - -13.2  -3.53091   ATGCCGCTCCTCAAA          CTCCTGG-GCG TAT CGCGCCAGGAG          TTCGCGGAGTATCAG  72 72
JRI60_RS36725 NONE
JRI60_RS36720 9205085 .. 9205107 -  -3.3  -3.21099   TTCCTTCAGGAGGAA          GTGCCCGGCG ACAT CGCC-AGCGC           CATCACCTCGCTGGT  45 52
JRI60_RS36705 9200127 .. 9200180 -  -6.5  -2.73875   TGGGCGTGAAGACCA CGCAGTTCGGCATCAGCCGGGAGCTG AGC CAG-TCCCTGCGGATGGCGGGCCGGG AGTCCGCGAGGCGGT  46 184
JRI60_RS36690 9196998 .. 9197022 -  -5.5  -3.05384   GCCCCCCGGAGGCAA          CCGGCATCAGG CTC CGCGGCGCCGG          CGCGAGAGCAGCAGC  47 7
JRI60_RS36685 9194926 .. 9194948 -  -2.5  -3.53224   GATCGGGCCTTGAAA           GGCTCGGCG AATCA CGACGCACC           TGCCCTAGAGTAAGG  48 191
JRI60_RS36680 9194405 .. 9194447 - -16.2  -2.73334   ACCAAGGACAGATCA GTCCATCCAGGGTCGAAGCG AAG CGCTCCGGCCCTCGGCGGAC ACGGTCCCCGGTGGA  77 57
JRI60_RS36675 NONE
JRI60_RS36670 9192158 .. 9192183 -  -6.7  -3.16071   CGCGAGAGCAAGACA         CCGCATGGCCA CTAC TGACCCAGCGG          CAGCAGGATCGTGAA  52 11
JRI60_RS36665 NONE
JRI60_RS36660 9189543 .. 9189554 -  -3.6   -3.8062   GAAGGCGGAGAACAA                GAGC GGCG GCCC                 GTGGGCGTGGGCGCT  56 380
JRI60_RS36635 9181851 .. 9181882 - -22.4  -3.98282   CCCACATCAAGCAAA      CGGGCGCGG-GATGG ATG CCATCCCCGCGCCCG      TCGACATCAGTCCCG 100 64
        cyoE 9180908 .. 9180918 -  -2.4  -2.60392   CATCCTCGAATCAAC                 CGTG TCC CCCG                 CTGTCGAGCATCAGC  38 10
JRI60_RS36625 NONE
JRI60_RS36620 9178974 .. 9178990 -  -3.6  -3.20991   CGGAAGTCAACGCAA              GACAGG CCTAT CCAGTC              ACTCCCGGCGATTGA  45 24
JRI60_RS36615 9177630 .. 9177679 - -12.9  -3.29461   CAACCTGCTGGACAA CGCGCGCAAGCACGGC-CAGGGC GCCGAG GCCCTGAGGC-TGCTCGAGCGCG ACGGTCAGCTGGCCT  70 374
JRI60_RS36590 9174568 .. 9174604 - -24.5  -2.72379   CGAACCCCGCAATGA    CACGCCCGCTCCCCCCT CGA AGGGAAGAGCGGGCGCG    AAGGACACGGCCCGA 100 59
JRI60_RS36585 9173955 .. 9173972 - -12.7  -3.55622   TCGAAGCGGTGGAAA             CGGTGCC AACC GGCACCG              CCCCCGCCCCTTGAG  74 175
JRI60_RS36580 9173652 .. 9173673 -  -5.7  -4.25283   AGCCCTCGATCAAAA           CCTGACGGC GTGT GCCGGAAGG            GGGGCAGCGGTCTCT  69 80
JRI60_RS36575 9172080 .. 9172123 - -16.2  -3.80573   CCGACGAGGAGCAAA GGCGGTT-CCGGTT-CCGCC TATAGG GGCGGGAACCGGGAACCACC GGCCCGCCTCCTCAG  91 61
JRI60_RS36570 9171050 .. 9171077 -  -3.2  -4.00782   GCAGAGGAGGAGAAA        CCGGCGCTCAAG TCCT CTCGCGTTCCGG         GGGAGCAGCCGAAGG  59 336
JRI60_RS36515 9160591 .. 9160644 -  -5.1  -2.78935   AGACCTCGTACCATA GCGA-CGTACCTGAACGGCCCGCAAG GGG CGCGCGAGCCGCTCAGGGAGGGTTGA AGCCAAGCCGCTCCA  45 12
JRI60_RS36510 9159247 .. 9159268 -  -2.1  -3.46509   CTTCAAGAAGATCAA           CGACGTGTA CGGG CACCCGGCG            GGCGACTACGTGCTG  48 415
JRI60_RS36495 NONE
JRI60_RS36490 NONE
JRI60_RS36485 9154018 .. 9154036 -  -6.7  -2.72379   CCAACGGTGGAAGGA            GT-CGGCG CATG CGCCGTAC             GATGCCACCACCCCA  48 78
JRI60_RS36480 9152729 .. 9152750 - -10.1  -2.53164   TCATCGAGCAGTAAT           CCCCTCTCC CCCG GGAGAGGGT            CAGGGTGAGGGTGCC  56 25
JRI60_RS36465 NONE
JRI60_RS36460 9148663 .. 9148686 -   -14  -3.10493   CCCCCAAGACACACA          TCGCTTGTAG ACGT CTACAAGCGA           GCGGCGGCTGAGGGC  73 63
        raiA 9147220 .. 9147249 -  -6.3   -3.2614   GAGCCCGGACACCAA       CCAGGGGTCCGGGC TCC GCCCGC-CCGCTAG       AAGCGCACGTCGTCC  53 22
JRI60_RS36440 9145041 .. 9145079 - -15.3  -4.77438   AGCTACCAGGAAAAA   GAAGAGGGCCCCAGGTC ACGTG GACCTGGAGCCCTCTGA   AGACGACAGTTCTCG 100 54
JRI60_RS36435 9143913 .. 9143967 -  -4.1  -2.64218   ATGGTGGAGCAGAAC CCGTCCCTGCTCGAGCTGCGCGTGC TGCAGAC GCTCGAGG-GCGCGAGC-GGCACGG CCGGTCACACCTTCG  41 158
JRI60_RS36415 NONE
JRI60_RS36410 9139431 .. 9139482 -  -7.9  -3.15056   AGCGTGAAGTGAAGA CGCGCGGTGCTCGCGCC-GAGGC GGGACGGA GCCTCAGGCGCG-GCGCAGGACG AGCACGGGGGTGGAG  54 7
JRI60_RS36405 9138425 .. 9138439 -  -2.7  -2.78384   CGTGGCCTTAGCACA               CGTGC TACTT GCCCG               GCGCGGCCAGCCCCA  40 15
JRI60_RS36400 NONE
JRI60_RS36395 9135892 .. 9135915 -    -3   -4.5123   AAGGCACGAAAGAAA          CCCTGGTCCG GGAA CTCACCAAGG           AGCAGCGCCATCTGC  72 489
         vsr 9133119 .. 9133139 -  -5.3  -3.03441   CAGCACCGGTGAACA            GCTCGATGG AGT CCATGGTGC            TCGATCCATGCAGCA  47 113
JRI60_RS36375 NONE
JRI60_RS36370 9130913 .. 9130927 -  -4.9  -3.21747   TGAGCGCATCACCAA               GGAGG GAGTT CCCCC               GGACCGGGAAAAACA  47 390
         xth 9109320 .. 9109330 -  -6.8  -2.88579   GCAACCCGGGACACA                 CACG GCC CGTG                 TACCCCAGGACACTC  50 39
JRI60_RS36295 NONE
JRI60_RS36290 9107691 .. 9107733 - -13.5  -2.80816   CCGTGAGCCACGATA CCCTCACCCCGTCCCTCTCCC GAA GGGAGAGGG--GAAGTGGGGG ACGATGTCACTCGGG  69 32
JRI60_RS36285 9105811 .. 9105845 -  -3.5  -4.08394   ACACGCGGGTGAAAA    CCCTCACCCC-CCG CCCTCTCC CAGCAGGGAGAGGG     AGCATGCGAAACCCG  61 113
JRI60_RS36265 9099978 .. 9099996 -  -8.8  -3.10164   GCAGCGAGGAGCGAA             CGGGGC ACGTGCG GCCCCG             AGGAGAGGTCGGATG  56 441
JRI60_RS36240 9095629 .. 9095660 - -14.4  -3.36785   TCACACGGGAATGAA      GCGGGGCAACACCC GGGA GGAGGTTGCCCCAC       TGCCGTAGCCCGGCG  77 57
JRI60_RS36220 9089665 .. 9089686 -  -3.7  -5.00616   TCTTCCTCCAAAAAA           GATGTCGTCC AAC GGACGAG-TC           AGCCGGCCCGCGTCT  81 164
JRI60_RS36215 9088821 .. 9088877 -  -5.1  -2.86838   CACAGGCAAACACGA GGTAGGACTGCCGCGTCGTCTCGGTCTC GGTC GAGGCCATTTCG-CGCG-CAG-CCTACC TCATACCCGGCTAGC  46 36
JRI60_RS36210 NONE
JRI60_RS36205 NONE
JRI60_RS36200 9086235 .. 9086259 -  -6.3  -3.14132   CCGGGCCCGGAGCAA          GCGAGGGCCGA CCA TCACCCCTCCC          TCTCCGCCACGCGGA  51 15
JRI60_RS36195 NONE
JRI60_RS36190 NONE
        cheB 9080832 .. 9080854 -  -4.7  -2.58215   CAGGAGGAAACAGAG           GGGGCACCG GGTGT CAGCGCCCG           ACGGCGAGGGACTCA  42 16
JRI60_RS36180 9079382 .. 9079399 -  -3.3  -3.57462   CATCTTACGGGCAAA             CCCTC-CG GCC CGCGTGGG             CTTCTTCACGCTCCC  49 61
JRI60_RS36175 9078388 .. 9078405 - -14.1  -2.90075   GTGGCGTCAACCACA             GGGGGCG ATCT CGCCCCC              GTTGTCTCCGGTGAA  71 127
JRI60_RS36170 9077363 .. 9077378 - -11.8  -3.28712   CCGGCCCCGGCACAA              GGCCCG CCTC CGGGCC               CCGTCCAGGACTAAT  68 36
        rpmE 9076883 .. 9076940 - -13.8  -3.87815   CGCGAGCGCCAGAAA CGCCG-CGAGCACGGTG--GGAGTGTCTC TCGGG GAGAC-CTCCGGCACCGTGCTCGGCGG-G TGCTACGAAGCGTGA  83 50
JRI60_RS36160 9075824 .. 9075852 -  -8.8  -2.77899   CGTGGCGATGAAGCA        CGTCCTGGAAGG TCAGC CCTTCCAGCTCG        TCACCAAGTGAGCCC  52 56
JRI60_RS36150 NONE
JRI60_RS36145 9073371 .. 9073383 -  -9.1  -2.94726   GGCCAGAAGATGAGA                GCCCA TCC TGGGC                CGCGACGGTGGAGGA  57 184
JRI60_RS36140 9072212 .. 9072224 -  -6.9  -2.98823   CTTCCCTGACACAGA                GGGGC TCG ACCCC                TTACACCAGTCCGCC  51 72
JRI60_RS36135 9071238 .. 9071254 - -13.7  -3.29144   TGACGTCGGTGAGAA              GCGCCTG ATA CAGGCGC              GTGGTTCACAGAAGG  75 125
JRI60_RS36120 NONE
JRI60_RS36115 9065818 .. 9065837 -  -6.4  -3.53779   GCCTGAAAAGATGAA            GCCGCCCTC CGC GAAG-CGGC            TCTTGCTCCGCCCGA  56 174
JRI60_RS36105 9064319 .. 9064333 -  -6.4  -2.96249   GCGCATGAAGAAGCA               GATGAC GAT GCCATC               ACGAGCCACAGGGAA  49 85
JRI60_RS36100 9063337 .. 9063368 - -13.6  -2.58999   GCCGGAGAGAGCAAG      GGCGTGCGCCGCGC CGGT GCAGGGGGCACGCC       GAAGGCGATGGGCTT  67 109
JRI60_RS36095 9062586 .. 9062598 -  -9.1  -3.48276   GTGCCGCGTACACAA                GAGGC GAC GCCTC                AGCGGGGTTCGGAGC  63 108
JRI60_RS36085 NONE
JRI60_RS36080 9059973 .. 9060000 -  -7.7  -2.71731   CCCACCCGGGAAGGA        GC-GGGGCAAAG CCTCC CTCCGCCCCTGC        CCTATGCGTCCTCAG  51 83
JRI60_RS36075 NONE
JRI60_RS36070 9058748 .. 9058762 -  -8.5  -3.06261   GCCGAATCCGCAAGA               GGCGG GTCCG CCGCC               TGAGGCGGCGAGCGT  55 59
JRI60_RS36040 9053267 .. 9053285 -  -7.4  -3.32844   CGCTGCACCTGAGAA             CCGACG CGGGCGT CGTCGG             CCGGTGGGACCGGCT  55 392
JRI60_RS36020 9049478 .. 9049493 -  -6.8  -3.60296   GAGCCGGATCCGAAA              GCGCAT CGCC ACGCGC               GGCAAGCCGGCTACG  59 36
JRI60_RS36010 9046633 .. 9046657 -  -9.9  -4.48877   TAAAGACGGAGAAAA          TTGGCGCGCGT CTC ACGCGGGCCGA          AAAAATCATGCTGGC  89 217
JRI60_RS36005 NONE
JRI60_RS36000 9045002 .. 9045026 -   -15  -2.53876   GGGGAGGGGAAGCGA          GGCGCCAGAC ACGCG GTCCGGCGCC          CTGCCTCCTCCCTCG  71 52
JRI60_RS35995 9042821 .. 9042834 -  -2.3  -3.97139   CAACGGCAAGAAGAA               GGACG AGCG CGTCG                TCTTCTTCGTGGCGG  57 180
JRI60_RS35975 NONE
JRI60_RS35970 9036820 .. 9036846 -  -6.6  -3.54475   GCCTCGAGGAGAGAA        GCAGGGA-TGG CACCTC CCACTCCCCGC         GAGCCCGAGTGGATG  56 258
JRI60_RS35960 9036246 .. 9036257 -  -5.8  -3.13403   GGGGCCTCAGTAACA                CGCT CCAC AGCG                 CACACTGCCGGTTCC  49 5
JRI60_RS35955 9035835 .. 9035849 -  -4.2  -3.88232   GTCCGTAGAGAACAA               GAGACC GTC AGTCCC               CCGTCGCAGCGCGCC  57 50
JRI60_RS35910 9028256 .. 9028266 -  -2.4  -3.54459   TCAATCCCTTGTAAA                 GGGG AAC CCCG                 GAAGCGGAGATAGCG  48 185
JRI60_RS35905 9026731 .. 9026777 -  -7.1  -3.61398   GCGTGTGCCCAATAA GCGCTGCCTGGCCTGTCCACC AGCCG GGCACACAACCCGGGCAGCCC CCTCCTCGGCCCCTC  58 138
JRI60_RS35895 9023989 .. 9024016 -  -8.3  -3.87815   CGCGACGTCGACAAA        CAGCGGCGCGC GAACGA GCGGGCAGCTG         CTCATCATGCGGGCG  69 498
JRI60_RS35885 NONE
JRI60_RS35880 NONE
JRI60_RS35875 9015825 .. 9015848 - -10.3  -2.73483   ACCCGAGGCCAAGGA          GTCGCGCGTG TCCGG CACGCGCG-C          TGTGCAGAACTTCAT  57 338
JRI60_RS35865 9014246 .. 9014292 -  -8.7  -2.71144   GATTGCGGTGAAGGA CGTGAAGGC-CAGCAGCGCGTG GTAC CAGACGCTGCTGCAGCTGCACG GGGGCGATCCGAACC  51 390
JRI60_RS35855 9013659 .. 9013673 -  -8.5  -2.71731   GCCAGGGCTGAATCA               CCGCC GCTCG GGCGG               GGGGACGAACACGCC  52 8
JRI60_RS35810 9004480 .. 9004502 - -10.5  -3.53012   GCCTTTTCCGTGAAA           TTCGCCGCC GGACT GGCGGCGCA           CCTCGGGAGGCATCC  67 357
JRI60_RS35805 9003843 .. 9003870 -  -6.2  -3.35798   ACGTTTGACGGACAA        GGGCC-AGGTGCC CGA GGCACTTCGGCTC        GCGCACCTCATCGGC  53 121
JRI60_RS35745 8989198 .. 8989235 -  -3.9  -3.29263   ATACCGCTTCGAGAA   CCGCAC-ACCTTCTGCCG TGC CGGCGGGCGGCCGTTCGG   CCTCCTGTGGTGCGA  47 299
JRI60_RS35740 8988676 .. 8988691 -  -3.2  -3.65353   TCAAAGGACTCGAAA              CGGCGT CAGG ACACCA               CGAAGGAAGCTTCTC  53 15
JRI60_RS35720 8983706 .. 8983718 -  -6.9  -3.05384   TCTCTCCCGAGCCAA                CGGCG GCG CACCG                TCGCAATCCGTTGAG  51 154
JRI60_RS35710 8981649 .. 8981666 -  -3.5  -3.33696   GGCTTCTGGAAGTAA             GAACTGAA GCA TTC-GTTC             CAGAACGCTCACGCT  47 86
JRI60_RS35685 8976820 .. 8976861 -  -3.7  -3.05844   TCCGGCATCGGAAGA GGAGGCTCAGATGTCTCT TTCGAGC AGAGAC-TCGATGCCCCC TCTTGAGCAGCCGGC  44 73
JRI60_RS35680 8975614 .. 8975644 - -20.5  -3.14132   CGTCTCCTGTAGCAA      GACCCCGG-GCGCC ATCA GGCGCGCCGGGGTC       TTCTTTTCATGAGCC 100 63
JRI60_RS35665 NONE
JRI60_RS35660 8969999 .. 8970013 -  -3.4   -3.7282   CGACTGCACGAACAA               CGGCGG CCC CCGCAA               CCTCGTCGTGGACAA  56 333
JRI60_RS35650 8965608 .. 8965632 - -11.3  -2.61681   TCCGAAGCCGAGAAC          CGGGCGTTCCT TCA AGGCCCGCCCG          TTGCCCTCCGAGGAC  56 377
JRI60_RS35640 8964382 .. 8964421 -   -12  -3.04853   CAAATCGAAATCACA  CCCGCG-GCGCGGGGTCCC ACG GGCACCACGCGCGCTCAGG  AACGCATCGCGGCGG  65 21
JRI60_RS35635 8961104 .. 8961121 -  -8.3  -2.61383   ACCTCCACCGACAAG             TCCGCCC CCTC GGGCGGG              AATGAGACACGGTGC  52 47
JRI60_RS35630 8959919 .. 8959947 -  -8.7  -3.14132   CCGGGGGGTCACCAA        GGCGACGCACACC CAG GGCCTGGGCCGCC        ACCGGCCGGAGGAGA  56 280
JRI60_RS35610 NONE
        mxcK 8953936 .. 8953954 -  -3.1  -3.27525   TCGTGTGAAAGGGAA             CTGCGTT GGAAG AACTCAG             GCCGGCACCGCGCTC  46 22
        mxcL 8952529 .. 8952578 -  -4.1  -3.31263   ACGTCACGCCCAGAA GGAGTCA-CTCGGAGGGAGATGTG ACA CGCATCGCCGCGCGAGGCGGCTCC CCCCTGGAGTCCGGC  47 73
JRI60_RS35595 NONE
JRI60_RS35590 8951126 .. 8951182 - -13.7  -2.71011   AGCGGCTGGTAACGA CGTCTTGCC-CGGGAAGGCCGATGGGC GCGCA GCTCA-CGGCCTTCCCGCGGCACGGGG GACGACGCTCCAACG  69 51
JRI60_RS35580 8948551 .. 8948572 -  -5.7  -3.21747   CGAGGCGATGAGCAA           CGGCAAGGC GCGC GGCATGCCG            CGACGCGTGGTTGCG  51 78
JRI60_RS35575 NONE
JRI60_RS35570 8946277 .. 8946301 -  -6.3  -3.14344   GAGCGTCCCGAGCAA          CCCCATCACGG CCG CGGCGACGAGG          ATGCGCGGGCCCAGG  51 54
JRI60_RS35565 8944729 .. 8944748 - -12.8  -3.14344   GAGCGTGTGGACGAA            GGACCGCG AGCG CGCGGCCC             GCTTCGCTACCCGGC  67 195
JRI60_RS35535 8935069 .. 8935106 -  -4.1  -4.07568   GGCTCCTCTGGAAAA   GAGTTGCCCTGGG CACCGAGCACAT CCCAGGCCAACAC    CCGTGGACGTCATTC  61 138
JRI60_RS35530 8934676 .. 8934696 -  -6.8    -3.767   CAGGCAGGTAGCAAA           GGCGGAGGC CCCG GCC-CCACC            CCACCTCCATGCCTC  64 63
JRI60_RS35515 8930489 .. 8930499 -  -4.6  -3.14564   GGAGGCGGTGATGAA                 GGAG GTG CCCC                 GCGGACTCGGCGCGG  47 322
JRI60_RS35505 8929364 .. 8929395 - -18.8  -2.62983   CGCACCGTCACAGCA      CAGGTACGGCCCCA CGGC CGGGACCGTACCTG       AATCTTCAATCAGCA  87 35
JRI60_RS35495 NONE
JRI60_RS35490 8924751 .. 8924763 -  -3.3  -3.28712   CCTGTTCTCCCAGAA                GGGGA CGC TCCAC                CCGGAGCTACCGGTC  47 188
JRI60_RS35475 8922056 .. 8922071 -  -3.9  -3.05596   GACCCGTTCACGGAA              CCCCG CGTACC CAGGG               GCTCAGGTCTTTTCG  44 28
JRI60_RS35470 8920016 .. 8920034 -  -2.3  -3.67611   CGGATTTTAACACAA             CCCCAGA AGTCG TCGGAGG             GGCGGGGTCCCGAGG  51 89
JRI60_RS35465 8918393 .. 8918424 -  -8.6  -3.99324   GTCCACTAGGAGAAA      CAGACGCCACCCGGC AAC GCCGGGCT-CGTCAG      GAGATGTGAGAACCG  70 22
JRI60_RS35460 8916077 .. 8916115 - -15.3  -3.04144   CTGCGAGGGGGAACA   GCCCCCTCCCCCGGA GACAGCCGG TCCGGGGGAGGAGGA   ATCACGCGGGACGGC  77 47
JRI60_RS35455 8915280 .. 8915338 - -30.4  -3.45366   TTCTCAACGAAGGAA GCCCATCCCCGAGGAGACGGCCCGGA GTCAAGG TCCGGCACGTCTCCGCGGGGATGGGC TCACCGAGGGTCCAT 100 99
JRI60_RS35450 NONE
JRI60_RS35445 NONE
JRI60_RS35440 NONE
JRI60_RS35435 NONE
JRI60_RS35430 8906666 .. 8906680 -  -2.1  -2.94551   AAAACCAGGGAGAGA              CG-GAG GCGA CTCGCG               AAAATCTGAAGGCGT  41 52
JRI60_RS35425 8905932 .. 8905950 -  -2.4  -3.68619   GGGAAGCCAGCGAAA            CGAGCGG GCCCTT CCG-TCG             CCGAGCGGTTGCAGG  51 94
JRI60_RS35415 8903871 .. 8903881 -  -6.8  -3.28712   CGGCGGCGGTGAGAA                 CGAG TAC CTCG                 TCGGTGATTGGAATG  53 216
JRI60_RS35405 8898705 .. 8898745 - -21.3  -3.46563   GACACATCACGACAA  CGGGGATCCCTTCCAGCCA ACC TCACTGGAAGAGATCCCCG  AGCACTTCTCCGGGA 100 44
JRI60_RS35400 8894075 .. 8894100 - -19.7    -4.371   GTGATGACACGAAAA         GGGGCGGCCCC TCGC GAGGCCGCCCC          TTGTCTTCACCCTGC 100 64
JRI60_RS35395 NONE
JRI60_RS35390 NONE
JRI60_RS35385 8888721 .. 8888746 - -19.7  -4.14511   AACGGCACGCGAAAA         GGGGCGGCCCC TCAC GAGGCCGCCCC          GTTCCTTCCGGATGA 100 48
JRI60_RS35380 8887949 .. 8887965 -  -4.3  -2.68823   TCCCCCTGACAGAAG              GAGCGGA TCC TCAGCCC              TGCCGGCGGCGGAGC  43 19
JRI60_RS35375 8887656 .. 8887699 - -22.4  -2.87931   GGCACGGCGGAGACA CCACGGGAGCCCCGCGCACGG CTT CCG-GCGCGAGGCTCCCGGCG TTGAAACGGAAGCGC 100 42
JRI60_RS35370 8885524 .. 8885537 -  -5.2  -3.06183   TTCAGTCGCACGCAA               CGGG GCATCA CCCG                CGCCGCGTACCTGGG  47 164
JRI60_RS35365 NONE
JRI60_RS35360 NONE
JRI60_RS35355 8882346 .. 8882375 - -13.5  -3.36505   ATATTTCACCCATAA       TCGCACTGGGCTC GCTC GGGCCCCGTGCGA        GCGGTGACCAGGAAG  75 47
JRI60_RS35350 NONE
JRI60_RS35335 8877022 .. 8877046 -  -2.8  -3.74251   GAGATCGCCATCAAA         CAGGGACTGCGG GAC CC-CAG-CCCAG         GGTGAGCTCATGCGA  53 33
JRI60_RS35325 8875333 .. 8875359 -  -2.1  -3.31144   GGCCCACGGGGAGAA         CGGGCCCGG AGAATAAAA CCGGGCGAG         CAACACTCACGTCCC  44 45
JRI60_RS35320 8874327 .. 8874375 - -10.9  -2.79133   GAAGCGCGGACGAGA CCCGGACGGCG-GCTCCCCGCG TACGGT CGCGGGGAGCCCGCCATGCATC CTGCGCTACGAGCGG  60 31
JRI60_RS35315 8873326 .. 8873344 -    -8  -3.29471   GCGCCACCACATCAA             GCCCGGCA TCG CGGCGGGC             CTGCGCCCCAGCCTC  55 222
JRI60_RS35300 8870139 .. 8870170 -  -9.2  -3.21416   CACCTGCAGCACCAA      GCACGCCCTCCTGG CCGC CCTGGCGCGCGCGC       ACGGACAGCCCGTCA  56 436
JRI60_RS35290 8868447 .. 8868472 -  -7.5  -3.07816   CGGCTATGCACTCAA         GCGAGCGCA GCATGCCT TGCGCACGC          GAATGGACGATGCGC  52 396
JRI60_RS35280 8867389 .. 8867430 -  -8.8  -2.66733   GCTGAATCCAGATGA TTCCGGCAACGCGCCGCAT CAGAC ATGCAACGCATTGC-GGCA TCGACATTCATGCGG  52 223
JRI60_RS35275 8864962 .. 8864995 - -11.1  -2.82635   AGTTCCATGAGCATA     CCGACTGGTTGGT TTGGATGT ACCAACCAGTGGG      TATGTTGTCAACCCA  61 317
JRI60_RS35270 NONE
JRI60_RS35265 8863578 .. 8863607 -  -2.6  -2.62616   TCACGCTGGAGATGA       TGGCGCTGCGCG TCCTCC CGAGCCGCACCT        TTGGCATCCTGATGA  38 264
JRI60_RS35240 8854683 .. 8854706 -  -5.9  -4.16016   GGATCCTTCAACAAA          GCCG-CGGCC TCGGT GCCCGTCGGC          GCATCCTTGGCTTTT  66 494
JRI60_RS35235 NONE
JRI60_RS35230 8850496 .. 8850512 - -15.1  -3.14602   TCGAGCCCACCAAGA              GCGGCGG TCC CCGCCGC              GGCAGCGGCACGAAG  73 505
JRI60_RS35210 8848214 .. 8848224 -  -6.8  -3.30771   GGACACGCTCGACAA                 GCTC ATC GAGC                 TGCTCAAGTCGGAGC  53 466
JRI60_RS35180 8838301 .. 8838314 -  -2.3  -5.06451   GATGACGGGAAAAAA               CCGGA ACAC TCAGG                GACAGGAAGGGGAAA  79 55
JRI60_RS35175 8835064 .. 8835089 - -18.3  -4.49756   TGTCAAATAGGAAAA         GGGACGCCCCC CCTC GGGAGCGTCCC          CTCTGATTCCCCCAG 100 50
JRI60_RS35170 NONE
JRI60_RS35165 8832660 .. 8832680 -  -2.4  -3.36878   GCGAGGCAGCGACAA            CACTGCGG CCTGC CCGCGTTG            CCCGGTTCGCAACCT  46 100
JRI60_RS35120 8821252 .. 8821262 -  -8.2  -3.01712   CCCTTCGTCGCAACA                 GGCG CCC CGCC                 AACACAGGCACGCCC  55 175
JRI60_RS35115 NONE
JRI60_RS35085 NONE
JRI60_RS35080 8811263 .. 8811284 -  -2.9   -3.6947   AGAAGCCCAAGAGAA           TACTCACCC GGAA GAGGGAGCA            TTCGCTCACCGGCCC  53 145
JRI60_RS35075 8810150 .. 8810167 -  -3.3  -3.54741   GACCATGTTTCGAAA             GGCGCTCG GCA CGT-CGCC             CGCGCGATACATCAC  50 98
JRI60_RS35065 8808136 .. 8808152 -  -2.2  -2.86619   ATCAAAGTCAAGAAC              CACGGA GACAT TCCACG              CTCGCGGGGCCCCTG  40 70
JRI60_RS35060 NONE
JRI60_RS35055 NONE
JRI60_RS35050 8805258 .. 8805277 -   -15  -3.46824   CGAGGAATGAATCAA            CGTGGCCC TCGC GGGCCACG             GGAATTCATGAGCCC  80 31
JRI60_RS35035 8802515 .. 8802527 -  -4.7  -2.69799   TCATTCCATACAGCA                GCGCC TCC GGCGA                ATCCTGGATCTGACC  43 96
JRI60_RS35025 8801110 .. 8801128 -  -3.7  -4.30576   GCCCGAGGAGGAAAA             GGGGAAC ACAGA GCACCCC             ACCGACAACAACGTG  66 390
JRI60_RS35015 NONE
JRI60_RS35010 NONE
JRI60_RS35005 8792266 .. 8792281 -  -6.8  -3.06183   TCGACTTCCAGGGAA              CTCCGA TTGT CCGGAG               CTTCTCGGCTCCGAG  51 45
JRI60_RS35000 8791242 .. 8791260 -  -5.8  -3.15663   ACGGACCTGGAGGAA             CCGCCCCC CTC GCGGGCCG             CCGCCCTCACCTGCC  49 514
JRI60_RS34990 8789324 .. 8789340 -  -7.9  -4.45664   CGAACTGAAGCAAAA              GCTGGCC CCG GGCGAGC              CCGTGGGCTACCTGC  76 214
JRI60_RS34975 8786043 .. 8786071 - -15.3  -5.21709   TTCGACATGAAAAAA        CCCCGGTCCCC ACCTTCG GGGAACCGGGG        TTTTTTAACTCCGCC 100 50
JRI60_RS34970 8784893 .. 8784943 -  -6.4  -3.17075   CGGGTGGGAAGGTAA GGGGCGCCGCCGGGACACGGGCTC TCA GTGCCCAGGCCCTCGCGGAGACCT CGAAGGGCGCTGGCT  51 446
JRI60_RS34960 NONE
JRI60_RS34955 8780416 .. 8780439 -  -4.5  -4.07568   TTGCCGGGTGCAAAA          CGTCCATCC GCGAGA GGGTGAACG           AAGCGAGCGCTACCT  62 35
        uvrB NONE
        uvrC 8776265 .. 8776278 -  -3.7  -2.71497   CGAGCGGAAATTAAT               CACGG CGAG CCGGG                TGGCGACCCTTCTTC  41 11
JRI60_RS34940 8775616 .. 8775627 -  -7.2  -2.85351   GGTGCCTAGATGAGA                CCGC GAGC GCGG                 CGGATCTGCTCCACC  50 4
JRI60_RS34935 8773698 .. 8773713 -  -4.7  -3.30124   TGTCATGTGCGACAA              GCTAC AGGCCG GTAGC               AGGGGGTCAATTTTT  49 100
JRI60_RS34930 8772853 .. 8772865 -  -9.1   -2.8474   CGCCACCGAGAACGA                GGTGC GCC GCACC                GTGGACGTGGCCTTC  53 480
JRI60_RS34910 8768957 .. 8768990 -  -5.1  -3.77588   ACTGCAGACGAACAA     GGTGAAGTACGTGGC GAAG GCCGCGCACTCCTTC      CACGCGCTGGACAGG  60 423
JRI60_RS34895 8766522 .. 8766541 -  -9.2  -3.28712   GTTCCCGCCGGAGAA            GGAGGGCC AGCC GGCCCTGC             TGCGCTTCGAGACGG  58 447
        mreC NONE
JRI60_RS34880 NONE
        mrdA NONE
        rodA 8760592 .. 8760607 -  -3.2  -3.30441   GAGGAGGGCTCAGAA              CATGTG GCGG CGCATG               CTGATGTTCACCAGC  46 4
JRI60_RS34865 NONE
JRI60_RS34855 8755222 .. 8755242 - -11.1  -3.26473   GCAAAGGACCAGGAA            GCCGGACCT TGC AGGCCCGAC            GGGCGCGTACTAGAG  66 472
JRI60_RS34845 8754691 .. 8754706 -    -4   -3.2794   GGCGAGGGAGACCAA              CGC-ATG GTT CATGGCG              GATACAACCCACTGG  47 51
        ccsA NONE
JRI60_RS34835 NONE
        hemC 8751601 .. 8751613 -  -3.3  -2.88544   CTCGATTTCGAGATA                GAGGT AGG ACCGC                CGGGGGAGACTTCCG  41 51
JRI60_RS34825 NONE
JRI60_RS34820 NONE
JRI60_RS34815 8747045 .. 8747082 - -24.3  -2.97747   GGGCTACACGACAGA   GAACGGACCGG-GCGACG GTT CGTCGCACCGGTCCGTCC   CGGAGCCCCTCACGA 100 35
JRI60_RS34810 NONE
JRI60_RS34805 NONE
JRI60_RS34800 NONE
JRI60_RS34775 8736257 .. 8736277 - -12.6  -2.71144   CACCCGCCTGAATCA            CGGCTGCT CGGCC AGCAGCCG            CAGGATGGCGATCTC  65 2
JRI60_RS34770 8734712 .. 8734723 -  -2.2  -2.84878   GGTTGCAACGCAAAG                GGTCG TAC CG-CC                GCTCCTGGCCATCAC  40 104
JRI60_RS34765 NONE
JRI60_RS34760 8732175 .. 8732200 - -10.3  -2.87881   GAAGGGCGGCAGACA         CGCCGAGCGCC TCAT AGCGCGCGGCA          AGGGGACTGCAAGCG  59 97
        pdhA NONE
JRI60_RS34750 NONE
JRI60_RS34745 8728283 .. 8728315 -  -6.3  -3.45023   GCACGAGGACCAGAA     GGAG--CCGACCCGC GAGTG ACGGGCCGGAGCTCC     CGGGCGGGCCGCCCA  55 69
JRI60_RS34735 8727538 .. 8727577 - -11.4  -3.10796   TTTCAGGATGTAAGA  GGAC-CCGTACACACCGGG AAC CCCAGCATGCTCGGCGTCC  AGGCCACCACCCCGA  66 58
JRI60_RS34730 8726195 .. 8726238 -   -16  -2.78384   TGCTGGTGGAGCACA TCGGCGCCAC-CGAGGAAGAG GCC CTCTTCCGCGTGTGGCGCCTG CTGCACAACGCCTTC  72 45
JRI60_RS34720 8724474 .. 8724501 - -21.4  -2.84051   TCACTCGTAGCAAAG        GCGCCCACCTTC TTGG GAAGGTGGGCGC         TTCGTTTTCCGGCCC 100 175
JRI60_RS34690 NONE
JRI60_RS34685 8720665 .. 8720691 -  -2.9  -3.13164   GGGCGAACCACGGAA        GGGAGCGCATCA CGAG CGA-GCGCCTCC         GCGGCGGCGCCACGC  44 8
JRI60_RS34680 NONE
JRI60_RS34675 8718919 .. 8718937 -  -6.7  -3.28712   GTCGCGCGTCTACAA            GCCCATCG CCCT CGA-GGGC             AGGCCGGTGGCGGTG  53 99
JRI60_RS34665 NONE
JRI60_RS34660 NONE
JRI60_RS34655 NONE
JRI60_RS34650 NONE
JRI60_RS34645 NONE
JRI60_RS34640 8709588 .. 8709603 -  -6.1  -3.79906   CCATGGGGAGAAGAA              GCCTC TTCAAC GAGGC               CCCGCTCCCTCGCCT  62 43
JRI60_RS34635 8708862 .. 8708894 -  -3.4  -3.02144   TCACGGGTGCGAATA      CCCTCACCCT GACCCTCTCCCAG AGGGAGAGGG      GATATATGGCTACGG  42 35
JRI60_RS34625 NONE
JRI60_RS34620 8704059 .. 8704112 - -23.8   -3.9243   CAAGCGTTGAAAGAA TAGAGGCCCCGCCCCGGCGTCCCC CCCTCC GTGGACGCCGCAGCGGGGCCTCCT GCTTCACCGGACGGC 100 64
JRI60_RS34610 8701229 .. 8701267 - -13.9  -2.80816   CCTGCATCCAGCACA  TGGACCCG-GTGAGCGCCG CAT CGGCGCCCACGCGGG-CAA  GACGTACCTGCGGCG  71 66
JRI60_RS34595 8696652 .. 8696664 -  -9.1  -3.04263   AGCGGATGTGGAAGA                CGCTC GCC GAGCG                GCGCTTCGATGATGT  54 323
JRI60_RS34580 8693913 .. 8693951 -  -5.9  -2.52464   TGTTCTGGGAATGGA  CCGTCTGGGGACGTGCTGG CCG CC-GCTCACACCC-GACGG  ATGCGGGTGCCGATC  45 13
JRI60_RS34575 8692870 .. 8692886 -  -4.3  -2.52464   CTCGTCGCGAAGTCA              CACACGT TGA ACGCGGG              TACCGAACTCTTTCA  42 6
JRI60_RS34570 NONE
JRI60_RS34565 8690473 .. 8690499 - -10.3  -2.79183   CCGACCGCGATCATA        CGAACATCCTTC ATTG GAAGGA-GTTCG         ACCGCGGCGGCACCT  57 144
JRI60_RS34555 8688368 .. 8688386 -  -7.4  -2.95476   AGGAGCCATGAGACA             CCCTCC AGCTCGA GGAGGG             TTCGAGTCTACGGAC  53 173
JRI60_RS34550 NONE
JRI60_RS34545 8686166 .. 8686179 -  -4.5  -3.61398   GCTCCTGGGGAACAA               CAAGG TCGC CCTCG                AGTGACTCAGGGGCT  52 266
JRI60_RS34515 8678881 .. 8678904 -  -8.8  -3.54475   CGTTCGACGAGACAA          TAGAGGCCCC AATA GAGGCCCCCA           ACCCGAAGCCAGAAG  62 475
JRI60_RS34505 8677690 .. 8677729 -   -12  -2.53747   GAAGCCGGACAACAT  CACCGCC-GCGCCCCCGGG AGA CCCGGAGCTGGAGGCGGTG  GCTCGCAAGGCACGC  59 375
JRI60_RS34475 8668335 .. 8668351 -    -5  -3.13522   ATCCGTCGACGAACA              CGTGGC TCCCC GCCGCG              ACCAGGAACCAGATC  45 176
JRI60_RS34455 8661002 .. 8661034 - -27.1  -2.52543   ACCCCCTGGAACCCA      CGAGGGCCCGCCATG TGT CACGGCGGGCCCTCG      CGCTCCTACCAGATG 100 31
        ptsP NONE
        pfkB NONE
JRI60_RS34430 8652979 .. 8652992 -  -4.5  -3.50853   CCGCGCCAAGGACAA               GCTCA AGGC CGAGC                TGGCGGGCCTGATGG  51 111
JRI60_RS34420 NONE
JRI60_RS34415 8649612 .. 8649639 -  -3.3  -4.07568   GCTCTCCTTCGAAAA        GGTG-GCGCCCG TGGAT CGGGCGCGCATG        TAGGAGAGCCAGTTC  59 82
JRI60_RS34400 8642601 .. 8642650 - -23.6   -3.5594   AATCCAGCGTCGAAA CACACACCAGGGCGGGCGCCCTC GTACG GAAGGCGCCCGCCCCGG-GCGAG CCCCCTGCTCAGTGA 100 34
JRI60_RS34390 8637337 .. 8637349 - -10.5  -3.09803   CAAGGCCAGGGAAGA                GGCCG AGG CGGCC                AAGGCCGCCGCCGCG  60 326
JRI60_RS34365 8632570 .. 8632609 -    -4  -3.53811   GCCAGCCGCCGGAAA  GGCGGCAGAC-CTCGTCCC CGG GGGCAGGGCGCCCTCCGCC  ACGTGCCGGGCCAGC  51 52
JRI60_RS34360 8631364 .. 8631390 -  -4.4  -3.62096   TCCCAGGATGCGAAA        CGGTCGTGTCG TCATGG CGGCAC-ACCG         TCGCACAGGTGAGGG  52 471
JRI60_RS34350 8630719 .. 8630771 -    -6  -3.40403   GGTGGTGGACGAGAA GCGGCGCGTCCTCCTCGGAG-CCAC CTTC GTGGGCCCCGAGGTGGGGGAGTTGC TGCACTCGGCCACCA  51 135
JRI60_RS34340 NONE
JRI60_RS34335 8626673 .. 8626700 -  -6.8  -3.15544   TCTCACGGGCAGCAA        CTTCCGGGGGTG CACG CTCACCCGGACG         AACTTCTCGGACACG  51 201
JRI60_RS34320 8623193 .. 8623215 -    -9  -3.01791   AGCCGCCCCTCAAGA           CGCGGGAGGC CAG GCCTCCCCAG           GACGCGGAGATCATC  54 302
JRI60_RS34300 8619245 .. 8619256 -  -5.8   -5.1101   TTACCAGTGAAAAAA                GCGA CCCC TCGC                 GAGCCCAGTAAGCCT  85 312
JRI60_RS34280 NONE
JRI60_RS34275 8615221 .. 8615248 -  -7.6  -4.41348   GTCGTTGGAAACAAA        GGCGTCCGAGGGC CCG GCCCACG-ACGTC        TCCAGGTTTCTCGGC  77 87
        sugE 8613821 .. 8613839 -  -5.2  -2.91395   AGGTCTTCGAGAAAT             TCACGCAG CCG CTACGTGG             TCGATGTCAGTTTCA  46 18
JRI60_RS34260 8612403 .. 8612439 -  -4.4  -3.72893   GAGCCGTCCAGCAAA   GCGCCGGC-AATGTGCG GCTG CACACATTCACCTTCGC    CTCCAACCACTTCCA  55 173
JRI60_RS34250 8609670 .. 8609688 -  -5.9  -3.19602   TGCGGCAGACGAAGA             GCCACCC TGATC GGGTTGC             AGCGCGCGGGCGCCG  51 386
JRI60_RS34240 8607915 .. 8607961 -    -8  -3.21772   AACCGCCCGAGAACA CGAAG-CAG-GGCAGGCTCACA CCTTC TGTGGGCCCGCCTCCGTCCCCG CTCGAGGGAGCGATG  56 165
JRI60_RS34225 8602386 .. 8602398 -  -2.6  -3.06796   CCGGACGGGATTGAA                GCCC GATAT GGAC                GTTGCTTCATTCGCC  41 59
JRI60_RS34205 8599047 .. 8599068 -  -9.3  -3.01791   ACCTCGCCCTGAACA           CGATCGCCG ATCT CGGCGCCCG            GTACTACGCGCTTCA  57 407
JRI60_RS34195 8596716 .. 8596731 -  -4.6   -3.4072   GACGGGGCAGTACAA              GGGGTA CGTC TGCCCC               TCCCACAACTTCATC  49 221
JRI60_RS34185 NONE
JRI60_RS34180 8594066 .. 8594088 - -15.6  -3.31931   CGACAGAAGCACCAA           CCCCTCTCCC TCC GGGAGAGGGA           CGGGGTGAGGGTATC  80 64
JRI60_RS34175 NONE
JRI60_RS34170 NONE
JRI60_RS34165 8590462 .. 8590485 -    -8  -3.82084   CTTCAAGACGAAGAA          CCGTTGCCTG CTCG CCGGCGACGG           CAAGGTCCAATCGAC  65 517
JRI60_RS34130 8583183 .. 8583206 -    -3  -2.60075   CGTGCTGGAACTAAG          TGCACGAGGG AAAT CCTTCGTACT           GGAAGTTAAATGCGC  39 51
JRI60_RS34125 8581805 .. 8581842 -  -9.7  -3.28712   CGTGCGCTCCTACAA   GCCCGAGGTCCGCAAGC AGCT GCTCGCCGGCATCGAGC    GCATCGCCCAGGCCG  61 425
JRI60_RS34110 8578172 .. 8578186 -  -9.2  -2.79915   AGGGAGGCCAGGAGA               GGGCGA TCT CCGCCC               TCCCCTGCTCTCGTC  55 55
JRI60_RS34105 8576829 .. 8576851 - -15.6  -3.61398   CCCTCTTCCTAACAA           CCCCTCTCCC TCC GGGAGAGGGA           CGGGGTGAGGGTATC  83 67
JRI60_RS34085 8573315 .. 8573332 -  -2.5  -3.84451   GTTCGGAAATCCAAA             GTCCCCC TGGA GCGGGGC              TGATGGCGGCCTCAA  54 37
JRI60_RS34080 8571984 .. 8572000 - -11.5  -3.28712   GTCCCTGCGCTACAA              GGGGACG TTC CGCCCCC              ACGAGCTGCTCCAGG  67 115
JRI60_RS34055 NONE
JRI60_RS34050 8567245 .. 8567265 -    -6  -3.28712   GGGCTTCTTGGAGAA            CCAGGCCA TGGAG CGGCCGGG            TTAATCCCACTTGCC  53 117
JRI60_RS34045 8566363 .. 8566402 -    -7   -3.7941   CAGCCGGGAGAAGAA  CTCCAGGGC-CTCCGCCGG CGT CCGGGGCAGCGTCATGGAG  CGAGGCTACCCGAGC  64 31
JRI60_RS34040 NONE
JRI60_RS34035 8563771 .. 8563789 -  -4.4  -3.16421   TGAAGAAGGACTGAA             CGGGCCTG AAG CAGCCCCT             CCCCACTCCGCGGTC  47 43
JRI60_RS34020 8560479 .. 8560522 -  -3.6  -3.04144   CGGCCACCGGCAACA GGAAGCTC-ATGACCCTCTCG ACG CGGGTGGGGCGTCGCGCTCCC TATATCAGCTCAGCG  44 35
        lptD 8557914 .. 8557925 -  -3.6  -2.97676   AGGGAGTGAAAGAAC                CACG CACA CGCG                 CCCGGGATTCCTAAC  44 36
JRI60_RS34010 8557408 .. 8557418 -  -8.2  -3.25073   CCTTGAAGAGGAAGA                 GCGC CGC GCGC                 CTTTGACGCACAGCC  58 120
JRI60_RS34005 NONE
JRI60_RS34000 NONE
JRI60_RS33995 8554295 .. 8554307 -  -2.6  -2.52676   GACTTCGGGAACTCA                GCGG TCGTT CCAC                TTCGGTGGACGCTTC  37 10
JRI60_RS33990 8552880 .. 8552895 -    -6  -3.44527   CATGGAGCAGGACAA              GGCCGC CTTC GCCGCC               GCCTTCGCCCAGGGC  53 500
JRI60_RS33980 NONE
JRI60_RS33975 NONE
JRI60_RS33970 NONE
JRI60_RS33965 NONE
JRI60_RS33960 8549947 .. 8549963 -  -2.2    -4.386   GAATCTTCGAGAAAA              CGGTGA CGTGC TCAGCG              GCGGGACGCGATGCG  65 20
JRI60_RS33955 NONE
JRI60_RS33950 8549086 .. 8549124 - -20.3  -2.72144   CTACCGCCCCGAAAG   TCGAAGGGGCGACCCGG AGTGA CCGGATCGCCCCCACGA   AGGCCGCCCGGGGAA  95 65
JRI60_RS33945 8547562 .. 8547574 -  -9.1   -2.5655   CCCACCTACACCAAC                GCTCC GAA GGAGC                CGCTGGACTTCCTCG  50 238
JRI60_RS33935 8544098 .. 8544145 -  -6.3  -3.44527   CATCGAGCAGGACAA GCCC-GTCGTCGAGCTC-TTCGG CCAC CCGGACGAAGCCGACGACTGAGC TCCACACGGAGCCCG  55 117
JRI60_RS33885 NONE
JRI60_RS33870 NONE
JRI60_RS33865 NONE
JRI60_RS33860 NONE
JRI60_RS33855 8528321 .. 8528334 -  -4.5  -2.53876   CCCCACCCCAAGGCA               GGGTCG GCA CG-CCC               GGGCCCCGACGCAGG  42 93
JRI60_RS33850 8527705 .. 8527731 -  -4.2  -2.53911   GCAACTTGGAATCCA         TGGGGGGCACCT TAT AGGCGCAACCCC         CGCCAGAATCCCGTC  40 43
JRI60_RS33845 8525320 .. 8525349 -  -4.1  -3.75169   GATCATCCTACGAAA       GCG-GAGCGGACGC GCT GTGACCGCCCTCAC       ATCCCTGCCCCAGGC  54 51
JRI60_RS33840 8523981 .. 8524025 -  -4.1  -3.29144   GGAGCTGCGCGACAA CGGCGGCGG-ACTCGCGACG GCGGAG CGCTTCGAGTACCGCTTCCG GGATGACTTCGTCGG  49 244
JRI60_RS33830 NONE
JRI60_RS33825 8520572 .. 8520592 - -14.1  -3.14132   CGCGCTCGGGAGCAA            CTGGTCTGA CAG TCAGACCAG            TTCGTCCGGAGCGCG  73 102
JRI60_RS33820 8518896 .. 8518907 -  -3.6  -3.36694   ATTGAGCGGGAAACA                CGCG TCAA CACG                 GGCTGCTCGGACACC  49 181
        clpX 8513327 .. 8513365 - -12.2  -2.57132   GCCCTGTCGGACAAG   CGCCTGCGCGAGGCCATG GAG CGAGGCGACACGCAGGCG   GTGCTGCGCAGCAAC  59 128
JRI60_RS33785 NONE
JRI60_RS33765 8504726 .. 8504747 -  -5.7  -2.57795   GTCACCACGAACGCA           CTCACGTGC ACCG GCGCGTGCG            CCTTGTGCTCCCCCA  44 224
JRI60_RS33760 8504093 .. 8504130 -  -6.8  -3.24747   GCTCTACATCACGAA   CCAGCTGGTGGAGGCC ATGGGA GGCCGCATCCAGGTGG    AGAGCCAGCCGGGGC  51 164
JRI60_RS33750 8501859 .. 8501897 -  -3.5  -3.14931   CGTAGCCTGGAGGAA   CCGGTTCCGCCACGGAG TTCAT CCCCGAGGAGCGCCCGG   AGGACAGAACCTCCG  45 67
JRI60_RS33745 NONE
        holB NONE
JRI60_RS33735 8497931 .. 8497947 -  -4.4  -3.78934   GGCCTTGCAGAAGAA              TGCTCG GCTCT CGAACA              AGGAGCTGGCCGCCG  58 461
JRI60_RS33725 8496546 .. 8496574 - -14.6  -3.14527   GAACCCGCAGTAACA        CGGCTCAGCCTC TTCGT GAGGCTGAGCCT        TTTTTTGTTTTCCGC  76 44
        metG NONE
JRI60_RS33700 NONE
JRI60_RS33695 8489259 .. 8489289 -  -8.8   -3.4252   GCGCATCCAGCACAA       CGGTCCGGCGCGCA TGG TGCGCGGCAGCCTG       GACGAGATGCCCGCA  58 357
JRI60_RS33680 8485110 .. 8485120 -  -4.6  -3.28712   CCTCGCCCGGGAGAA                 CGGC GAG GCCA                 ACGGGCTGCTGGGCC  49 389
JRI60_RS33660 8481477 .. 8481492 - -11.8  -5.37593   GCTGAAACGAAAAAA              CCGGCC CTCG GGCCGG               TCTTCCTTGCTTGCC 100 114
JRI60_RS33650 8477821 .. 8477840 -  -7.8  -4.30576   CTTGGATGATGAAAA            GCGCACGA CGGG CCGTACGC             CCTCCCGCCGTGGGA  77 77
         gap NONE
JRI60_RS33640 8475535 .. 8475549 -  -2.7  -2.62184   TGTGCCGCCATAGGA               CTCCC TCCCT GGGTG               TTGTGTGCGGGGGAC  39 40
JRI60_RS33635 8474708 .. 8474732 -  -7.7  -3.72576   CGGTCCTGGATGAAA          GGCCGCGCAGC CTA ACCGAACGGCC          CTGGCGGTGACAATC  63 50
        secG NONE
JRI60_RS33625 8473936 .. 8473976 -   -17  -4.09685   GCGTAGCCCGGAAAA  TGAAAAAGCCCCCGAGTC ACTTG GACTCGGAGGCTCTTTCG  GAGTGCCCAGGGCGG 100 29
JRI60_RS33615 NONE
JRI60_RS33610 NONE
JRI60_RS33605 NONE
JRI60_RS33600 NONE
JRI60_RS33595 NONE
JRI60_RS33590 NONE
JRI60_RS33585 NONE
JRI60_RS33580 8460412 .. 8460441 - -19.3  -3.04144   CTTGCACTTTCAACA       CCGGCCTCGGAGA GCGA TCTCCGGGGCCGG        TGCGTTTCTCCCCCA 100 378
JRI60_RS33575 NONE
JRI60_RS33570 8456895 .. 8456916 -  -2.3  -4.71061   ACTCAGATTCAAAAA           TGAGTT-CCT TTC AGGTAACACA           GGAGACCATCGAAAG  74 102
JRI60_RS33565 NONE
JRI60_RS33560 8454914 .. 8454927 -  -4.5   -4.2828   CCTCATGGACGAAAA               GCAGCG ACA CGC-GC               TGGGGGACGCGGCCC  67 375
JRI60_RS33550 8453095 .. 8453117 -  -6.3  -3.38768   GGAGACCATCCAGAA          CCCT-CGGAC CCAC GTCCGGAGAG           TAGTTTTGGCACTCC  55 197
JRI60_RS33545 8452230 .. 8452269 -   -10   -3.7282   CGAGTCGATCAAGAA  CCTCCATGGCCAGCTGGCC CCG GACGAGCTGGACA-GGAAG  CACACGGAGCTCTTG  70 502
JRI60_RS33515 8447668 .. 8447678 -  -2.4  -3.43203   GGAGGACAAGACGAA                 CACG GAG CGGG                 AATCTCCAAAGTGAA  46 139
JRI60_RS33510 8446648 .. 8446668 -  -6.1   -3.0127   TCAGCCAACCAGACA            GGTCAACCC CCA GACTTGACC            TTTTGGAGCGGGAGA  49 101
JRI60_RS33505 8445228 .. 8445254 -  -4.9  -3.54653   AGGCCCACGAGACAA         CGGCACCGGCC CCTCC GCCCGCGGCCG         GCGAGCACCCGGAGC  51 141
JRI60_RS33495 8443368 .. 8443380 -  -4.1  -2.78384   TGTCCTGCCATCATA                TAGAG ATT CCCTA                GCGGGGTTTTCATTC  41 35
JRI60_RS33490 8441795 .. 8441815 -  -6.7  -5.37593   GCGCAAACGAAAAAA            GCCCCCGAG TCA CTTGGGGTC            GGAGGCTCCTTCGGA  95 332
JRI60_RS33485 NONE
        brxL NONE
JRI60_RS33475 NONE
JRI60_RS33470 NONE
JRI60_RS33465 NONE
JRI60_RS33460 8428747 .. 8428772 - -11.2  -2.91144   CCAGCCTCGAAAGGA         GGAGTAGGCC GCGTGG GACCTACTCC          TTTTCGATCTTCAAG  61 19
JRI60_RS33430 NONE
        galK 8419328 .. 8419340 -  -3.3  -3.37344   CTGGCACGGAACGAA                GGTTC CGC GATCC                TCGCGGCGTGTGCAA  48 88
JRI60_RS33420 8418127 .. 8418183 -  -4.3  -3.27994   CGAATGCTATACCAA CCCGCGG--AGGGACCGCCCGGCCC TGACAGGAC GAACCGGGCGGTTCCGAACCTCGAG TCCTCTCAGAGGGCC  49 31
JRI60_RS33415 8417217 .. 8417232 -  -3.9  -4.16842   GCGAGCCCCAAGAAA              GAGCG GAGGGG CGCCC               TGGCGGGGCGTCCCG  65 78
JRI60_RS33410 8415937 .. 8415953 -  -2.3  -3.08211   ACGTGTTCAAAACGA              GACAT GCGGGCG ATGTC              GGATGGATGTATGGC  42 49
JRI60_RS33405 8414073 .. 8414097 - -17.2  -2.69964   TTTTCAAGGACAGGA          GACGCCGGGA GGCCA TCCCGGCGTC          ATCCCTGGAGGAGAA  80 466
JRI60_RS33390 NONE
JRI60_RS33330 8397145 .. 8397176 -  -2.1  -2.52464   CCGGGCCGGAAGCTA      CTTCAAGCGCCCG GCCGAG CGGACGCCCGATC       TCACTCCTGCTCGAT  37 26
JRI60_RS33325 8395851 .. 8395863 -  -5.5  -3.23216   CGCGATGATCAGCAA                GACGC TGC GCATC                CCCAAGTTCTGAGCC  51 50
JRI60_RS33300 NONE
JRI60_RS33295 NONE
JRI60_RS33290 NONE
JRI60_RS33285 8385110 .. 8385167 -  -5.9  -3.67877   AGCTGTCAAGAAAGA CCTGTAGCGAGCGGTAGCACCGGGCGT GCGG ATGCCGGGCGCGACCGGGCGGAACCGG GCGGGTGTTGGGGAG  59 73
JRI60_RS33280 NONE
JRI60_RS33275 8383939 .. 8383964 -  -3.9  -3.33696   CTGGGTGTCAACGAA         GCGTACGGTCCG TGT CGGACAGTG-GC         TCCCACCCCGATTTT  47 40
        purH NONE
JRI60_RS33265 NONE
        purD NONE
JRI60_RS33255 NONE
JRI60_RS33250 NONE
JRI60_RS33245 8374193 .. 8374215 -  -2.6   -3.6682   GCCCAGGGAGGGAAA           TCGTTCAGCG GTA CAATGGACGA           GGAAGTCAACTGGGG  51 31
JRI60_RS33240 8373664 .. 8373704 - -12.5  -4.16016   CGAGCGGCGAAGAAA  CAGGGAACATCCGCCGGGT CCT ACCCAGCGGATCCTCCGGG  TCTCAGCGCTCCTCG  83 28
JRI60_RS33235 NONE
JRI60_RS33230 8371445 .. 8371469 -  -4.2  -3.91716   GCACCCCTGAAAGAA          CCTACTCCAG CTGGC CTAGAGCTGG          ATCTCGTGCTTCTTG  59 16
JRI60_RS33225 8369587 .. 8369623 -  -2.8  -3.47349   CCGCCAAAGGTACAA   CCCACGCACACCGGGCG CCGA CAGCCAGCGGG-GCGGG    CGCCTCGGGAACGGC  48 100
JRI60_RS33220 8368321 .. 8368339 -  -3.8  -3.08679   CTGCTCGACGGAACA             GAGCCA TCTTCCC CGGCTC             ATCGCCATCGACGTG  43 150
JRI60_RS33205 8366416 .. 8366433 -  -8.3  -3.36327   GGAGCTCACGGAGAA             GGGGCGC AACC GCGCCGC              GCTGTTCAGCTGGGA  58 135
JRI60_RS33195 8364131 .. 8364162 - -10.8  -3.01712   TGCTTGTGGCCAACA      GTGCGAGCCTCCCGG ACC CCGGGAGACCC-CTC      GGAAAAGGGGGGCAC  62 55
JRI60_RS33190 NONE
JRI60_RS33185 8359242 .. 8359286 - -10.5  -3.45849   GCGACAGCAGGAGAA CGGGCACGGCGGCTCCCCGCT CAG AACGAGGAGCCGCTCAACCGG CCGTAGGCCTCGGAC  65 1
JRI60_RS33180 8358232 .. 8358244 -  -4.1  -4.14792   AAACCAAAAAGACAA                TTCGC GGC ACGAA                CCATACCGTGCTTGT  63 244
JRI60_RS33165 8352150 .. 8352171 -  -2.2  -2.73364   CTTCCACGTCAAGCA           GCGGGGCCA GGAGG TGGCCAC-C           ATCCGCAAGCAGTGG  39 231
JRI60_RS33145 NONE
JRI60_RS33140 8346712 .. 8346734 -  -3.2  -3.59979   TGCGCGGAGCGGAAA           CCCCTTGGGC TCA GACCACGGGC           GGTGAGGACTTGGGC  49 13
JRI60_RS33135 NONE
JRI60_RS33130 8345397 .. 8345440 -  -4.2  -4.12188   GGAGGAGCTGGAAAA GGGAGGAGCCCATGACGTGC CTCA GCTCGCCTTGGCCGCCGCGC CCTTGCGGACCGGCA  61 3
JRI60_RS33125 NONE
JRI60_RS33120 8342565 .. 8342581 -  -6.5  -2.70932   CGCCTCCGTGAAGGA              CCCGG GGCTCTT CCGGG              CCGTGGTGGCGTTGG  46 524
JRI60_RS33110 NONE
JRI60_RS33105 8340677 .. 8340720 - -15.4   -3.0263   ATGAGCGCCGGAACA CTGGACAGGAACCTCGTC ACCCCCAA GACGCGGTTCCTGCCCAA ACCCTTCGAGTTCGA  71 82
JRI60_RS33060 NONE
JRI60_RS33055 NONE
JRI60_RS33050 NONE
JRI60_RS33045 8329786 .. 8329836 - -16.1  -3.55563   ACCCGAGCCCCCAAA CGGCGAAGGCGGTACCCGTGGTGC CGAA GCACCTCAGGTACCGCCC-CGTTG GGTGGTGGACATGGA  86 55
JRI60_RS33040 NONE
JRI60_RS33035 8326963 .. 8326974 -  -3.6  -3.84406   CGCCGAGGAGAAGAA                GCCC TCGG GGAC                 GCTGGCCAGCGGCGG  56 195
JRI60_RS33020 8325144 .. 8325165 -  -5.7  -2.53876   GGGCAGGTCAAGCCA           GCAGGCGCC CGTC AGCGCCCGG            CACTGGCCTGGGCCT  44 15
JRI60_RS33015 8324660 .. 8324697 - -11.3    -5.252   GATGCGGACAAAAAA  GAAGCGGCGCG-GCCCC GGAAGG GGAGCACGCGCCGCC-C   GAGGAGACACGCGCC 100 63
JRI60_RS33010 8323363 .. 8323376 -  -2.3  -3.55444   TGGGGAGCGGGTAAA               GGCAG ACCC CCACC                CTTTACGGGAGATCC  48 97
JRI60_RS33005 NONE
JRI60_RS33000 NONE
JRI60_RS32995 8303294 .. 8303306 -  -3.3  -3.55761   GACGGAGTTGCGAAA                GCCTT TCA ATGGC                CCACAGGTCCGCCAG  50 54
JRI60_RS32960 8293375 .. 8293389 -  -4.2  -3.25823   CCGCGTGGAGAGCAA               GCCC GGTGAGG GGGC               TACTTTCACGGTGGA  47 189
JRI60_RS32940 NONE
JRI60_RS32935 8285021 .. 8285031 -  -8.2  -3.20367   CAACAAGCTCATCAA                 CGCC CGC GGCG                 AGACGGTGGCGGAGA  56 490
JRI60_RS32925 NONE
JRI60_RS32920 8276629 .. 8276646 -  -3.3  -2.72344   CGGGAGCTGGAACGA             CAAGGCG TGAC CGTCCTG              CGCAACCGGGGGGTG  40 402
JRI60_RS32905 8273327 .. 8273342 -  -4.7  -3.28712   GTCCTGCGCGGAGAA              GAAGC TCGGCG GCTTC               ACGCTGGAGTCGGAC  49 257
JRI60_RS32865 8259000 .. 8259022 -    -9  -3.51825   CGAGCTGAAGGAGAA           GGTGCTGCGC GGG GAGCTGCACC           CGAAGGCGGCGAAGT  61 365
JRI60_RS32840 NONE
JRI60_RS32835 8254318 .. 8254330 -  -6.9  -3.09015   CGGACACGGATCCAA                CCCGG GGT CCGAG                CGACCCTCACCCCGA  52 73
JRI60_RS32830 8253850 .. 8253876 - -10.8  -3.15579   GCAACCCGCGAGCAA         CCCCCCTCTCCC TCC GGGAGAGGGACA         GGGTGAGGGTATCGA  64 145
JRI60_RS32785 8241565 .. 8241586 -  -7.9  -3.61398   GGCCGCGTCGAAGAA           CGCCGTGAA GCGT TCCGCGGCG            CCTCCGCCCGTCGAG  61 227
JRI60_RS32770 NONE
JRI60_RS32765 NONE
JRI60_RS32760 8229808 .. 8229845 -  -2.5  -3.80142   GAGATAAGACGGAAA   GACTTCAAGGCAAGGCA GACC CGCCCTGCCTGCACGAC    TGGGAAACAGTGCGG  54 82
JRI60_RS32755 8228009 .. 8228022 -  -4.5  -3.61398   CGCCTGGGCCAACAA               CCTCC AGTG GGAAG                ACGCCGGAGAGGTCC  55 322
        pgeF 8223319 .. 8223334 - -10.4  -4.17556   GAGACCGTCAAGAAA              TCGGCC CAGA GGCCGA               TCAGAACCGGTGCAC  85 26
JRI60_RS32735 NONE
JRI60_RS32730 8221074 .. 8221089 -  -6.1  -4.12532   GGCGGGACACATAAA              CACCG GACTGG CGGTG               GTCAAGCGGCACGTC  66 123
JRI60_RS32725 NONE
        topA 8217208 .. 8217224 -  -9.4  -2.52464   TGGGGTGTCAAGCCA              GGGGCA GGCCA TGCCCC              TGATATCCTTGGACT  54 50
JRI60_RS32715 8216347 .. 8216359 -  -2.6  -3.44051   CCTGGAGTAGTAGAA                CGCC ATGGA AGCG                CCCTCAGGCGGCCCG  46 29
JRI60_RS32710 NONE
JRI60_RS32705 8215140 .. 8215152 -  -9.1  -3.14211   ATCCGGTGTGAGGAA                GACGC AAC GCGTC                ACGAGCTGGACATGC  56 116
       trmFO NONE
JRI60_RS32690 8211581 .. 8211615 -  -9.8  -3.12999   CCAGCGTAGACTCAA     CCGGGCCGCCCGCAAG CTT CTCACGGCTGGGCCGG     CGCCACGTACACGCC  62 11
JRI60_RS32685 8210605 .. 8210620 -    -9  -3.29144   CCACGTCGCCGAGAA              CGCTCA CCCC TGAGCG               GCCCCGTTCAGTCCC  61 54
JRI60_RS32675 8207044 .. 8207058 -  -2.8  -5.04385   CACAGCGTGAAAAAA               TAGCAG GAA CTGATA               CAGACACGGGGAACG  79 99
JRI60_RS32670 8205742 .. 8205787 - -16.2  -3.02471   GGTGGACGAGAGACA CCAGGGGTG-GGAGCCCGCTCC TCGT GGA-CGGGCTCCCCTCCCCCAG CCATACAACGTCACT  79 44
JRI60_RS32665 NONE
JRI60_RS32660 NONE
JRI60_RS32655 8201743 .. 8201776 - -15.9  -2.62184   GCGGCTTTCACATCA     GGCGGAGGCGGGGCC GAGC GACCCCGCCTCCCGC      GCTCCGTCAGTCGTT  74 32
JRI60_RS32650 NONE
JRI60_RS32645 8199538 .. 8199557 - -12.1  -6.06723   TGGGCCAAAAAAAAA            GCCGGCC ACACAG GGCCGGC             TTCTTCTACCTACAG 100 60
        hslV NONE
        hslU NONE
JRI60_RS32625 8195343 .. 8195356 -  -5.3  -2.87319   GGGAACTCAGGAAAG               CTCAA GAAC TTGAG                AAATCCTAAGCCCCC  46 174
JRI60_RS32620 8194281 .. 8194303 -  -2.7  -3.13403   CCGGGGCGAGGAACA           CGAGGGT GACGTGACG ACCCTCA           CCCCCCGCCCTCTCC  44 116
JRI60_RS32595 NONE
JRI60_RS32590 8189613 .. 8189635 -  -3.2  -2.78384   CGCGTGCCTACCACA           GCGCCTCCCG GGC CGGGAGTGGA           AGCGGGGCTCAACTC  40 34
JRI60_RS32585 8187919 .. 8187940 -  -2.1  -3.64703   TCCGGGGGACTGAAA           GGATTACGG CTTT CCGCTTTCC            ATGGGCAGCAGAACG  51 7
JRI60_RS32580 NONE
JRI60_RS32575 8185302 .. 8185317 -  -2.5  -3.05463   ATGCCTCGTAGGGAA              GAAGG TTGTCG CCCTC               CCCTACGAGACACCC  41 52
JRI60_RS32570 8184502 .. 8184548 - -17.2  -4.25104   TCCCTCCGAGTAAAA GCGGGGCGCTCGCCGGATCC TTGGAGT GCAACCGACGAGCGCCCCTC ACAGTGCCGTGGCTG 100 60
JRI60_RS32550 8180793 .. 8180833 -  -8.1  -3.06696   CCGTGGCCCAACACA  TCCGGGACTGGCTGTCCGG ACG CTGACCCGCGAATCCCGGA  CAGTGCGCTCGATGG  53 65
        thrA NONE
JRI60_RS32535 NONE
JRI60_RS32530 8174268 .. 8174297 -  -9.9  -2.74012   CGATGAGCTCAAGTA       CGGC-CCCGAGGCC CTC GGCCTCGTCCGCCG       CTACCTCAAGGAGCA  54 459
        folD 8172784 .. 8172796 -  -6.2  -3.37796   GGCCATCATCCAGAA                GCGG CTGGC CCGC                TTGTCTCCGGAGGCG  53 288
JRI60_RS32510 8169932 .. 8169961 - -22.9  -2.85351   TCGCCGGACAGGAGA       CGTGGCGCGGCGC CGGA GCACCGCGCCACG        TTCCGGGACAACGCC 100 40
        araG 8168400 .. 8168419 -  -4.2  -2.76492   CGATCCATTTCAAAT            CCTCTCAA GCCA CTGAGCGG             TCGGGCAGTGCCGCC  41 10
        araH 8167447 .. 8167465 -  -5.8  -2.85847   AAGGCTCACATCAGA             CGCGCCGC CCC GTGGAGCG             TGTACGTAAATTATC  46 2
JRI60_RS32495 8165229 .. 8165271 -  -5.5  -3.14132   CCTCGGCCCGAGCAA CCCCAGGAGCCCTCCACTTCC GCG AGTTGTGGAGG-CTGC-GGGG CGAGCGCCAGCGGTG  49 95
JRI60_RS32485 NONE
JRI60_RS32480 NONE
JRI60_RS32475 8156903 .. 8156926 -  -7.4  -3.14132   GCGTCTGGCCACCAA          CGAGGGC-GAC GCC GTCTGCCCTTG          AGCACCGCCTCGCCG  54 42
JRI60_RS32465 8152847 .. 8152899 -  -6.8  -3.31461   CACCTACGTGCAGAA CGCCGGCAACGGTGA-CGCGGTCGC GCTC GCCCCCACGCTCATCCTCGCGGGCG GCGTGTCCGCCCGTC  53 384
        gcvT NONE
        gcvH 8146524 .. 8146534 -  -4.6  -3.50572   AGGGACCGGAGATAA                 CAGC CGG GCCG                 GGCCTGTTCTCACCC  52 48
        gcvP 8143437 .. 8143477 - -21.2  -2.74144   CCTTTAGCCTGAAAT  GCGAAGGGCCCGGAACCG ATACA CGGCTCCGAGCCCTTTGC  TGTCGGTTCTCACGG 100 129
JRI60_RS32420 8139956 .. 8139997 - -17.4  -4.70534   TAAAGAGAGAGAAAA GGCGAAGGGCCCGGAACCA ACTGG CGGTTCCGGGCCCTTC-CT TCACTTCACCCGAAC 100 58
JRI60_RS32415 8136171 .. 8136213 - -22.8  -4.18197   AGTGGGGACGGAAAA GGCGAAGGGCCCGGAACC TCCCATC GGTTCCGGGCCCTCCTCC TACTTCACCCGAACT 100 84
JRI60_RS32375 8124485 .. 8124517 - -11.2   -2.5919   CATGAGAGGAATTGA      GGGACGAGGGCCGC GGGCG ACGACCCTCCCCCC      CGCCCTCTCCCAGCA  59 86
JRI60_RS32370 8122651 .. 8122661 -  -4.6  -3.06696   CTGCCTCGGAAGATA                 GGGA CGT CCCC                 TCGGGCTGGTAGCAC  45 129
JRI60_RS32365 NONE
        mprF NONE
JRI60_RS32355 8118096 .. 8118152 -  -8.8  -3.08679   CGCGCGCATGGAAGA TGATGGCTCCATCACCGAGCCTGCGCCA GGC CGGCGCATCCTCGTTGATGC--CCATCA ACCAGCCTGCGCCAG  56 279
        istA 8115409 .. 8115427 -  -2.3  -2.87132   CCCCCGGGGCAGAGA             GCTCGAG GACTG CCCGAGG             GGGAGGAAGACTCTC  40 44
        istB 8114412 .. 8114450 -  -8.1    -4.015   TCATTTATGAAACAA  TCCCAGGGAGGC-AGGTC AGAT GACCTAGGCTCCCTGGTC   CATTTTTGAAACGAG  68 144
JRI60_RS32335 8113441 .. 8113477 -  -6.5  -5.07486   GAGCGGGAAGAAAAA   CCGGGGCG-GGAGGGC TGGCGG GCCCTCCACACCCTAA    GAGCTCGTTTCAAAA  86 73
JRI60_RS32330 NONE
JRI60_RS32190 8082644 .. 8082701 - -20.6  -4.08767   GCGACTCCCGGAAAA CCAGAGGGGCCCTCCCCCGCTCCCCCG TGAGC CGGGCGAACGGGAAAAGGCCCC-CTGT GCGGCCGCGAAAGGC 100 55
        purL 8078277 .. 8078311 -  -6.3  -3.28712   CCGCCGGCCGGACAA    GCTCGTGCCGGACATC GCCG GCTGGC-GGCGCGAGC     GCCTGCCGCAGGCCA  53 337
JRI60_RS32165 8074813 .. 8074826 -  -5.9  -3.35679   TGTCTTGAGGGACAA               CCGGG AGCC CCCAG                ATGCCCTTCCCGTGA  55 78
JRI60_RS32160 NONE
         asd 8073180 .. 8073237 -  -2.8  -3.25823   GCGCGCGCACACTAA TGGGT-TGTAA-CGGGGGT-GGCACTC CCAAATT GAGCACCTACCCCCGCCTACTCACCCC AGGAGCCCTTGGGCA  46 19
JRI60_RS32150 8072706 .. 8072732 - -15.9  -3.96148   TCCGGGCAGGACAAA        GGCCCTCACGCC TCTC GGCG-GAGGGCC         TCGGGCACGACCCTC  91 92
JRI60_RS32130 8068521 .. 8068553 -   -12  -2.70932   GCTCCTCGCCAACCA     CACCC-CCGAGAAGG TCTC CCTCCCCGGTGGGCG      TACCGCGAAGGTTCA  60 464
        cglB 8061970 .. 8061984 -    -7  -3.55444   CCCTCACCGCGTAAA               GCCGCC CCT GGGGGC               TACCGCTTCCGGACG  58 25
JRI60_RS32100 8060927 .. 8060944 -  -5.5  -2.60079   CCACCCTATAACCGA             CACCCCGA TGC CCGGGG-G             CTCTTTCTGCTCACG  44 36
JRI60_RS32095 8060419 .. 8060433 -  -2.1  -3.14132   CTGCCCCTGGACGAA              CGCTGG CGTG CCA-CG               GACTAGAGGACCTCG  42 28
        rlmB NONE
JRI60_RS32085 NONE
JRI60_RS32080 NONE
JRI60_RS32075 NONE
JRI60_RS32070 8059022 .. 8059041 -  -2.1  -2.68823   TTCCTTGGACATAAC            GCTCC TCGAAAAAAT GGAGC             CCCGAACCAGGATTG  38 20
         tuf 8057759 .. 8057773 -  -3.5  -3.62275   AGGCACGAGGGGAAA               GCTGC TTATC ACAGC               TCCCCCCTCGGGGTT  51 80
        rpmG NONE
JRI60_RS32055 8057412 .. 8057451 -   -23  -4.09685   GCTGATCCCGGAAAA  CACAGGGACCCCCGGTAC GTGG GTACCGAGGGTCCCTGCA   ACTCAACGACTGGCA 100 36
        secE NONE
        nusG NONE
        rplK 8055811 .. 8055823 -  -4.1  -3.06694   AGGCATGTTGAAAAT                CCTCT TTT AGAAG                GGGTGGGGAGGTGGA  44 45
JRI60_RS32035 8055015 .. 8055056 - -13.6  -5.40072   CCGGCGTCAAAAAAA CGACGGGGCGGGCCTCGT ACCGTG AGGCTGCCCGCCCCGTCA  TGAACCGACGACTCC 100 57
JRI60_RS32030 NONE
        rplL 8053590 .. 8053618 - -17.4  -3.72363   TACGGAAAGGGCAAA        GCCGGCGCACCC CTTCC GGGCACGCCGGC        CTGCTCATCCGGTCA  91 91
        rpoB NONE
        rpoC 8044900 .. 8044926 - -21.6  -5.75538   CTGAAAAAAGAAAAA         CCGCCACCCCGG AAG CCGGAGTGGCGG         TGTGGGACATCAGGA 100 54
JRI60_RS32010 NONE
JRI60_RS32005 8043556 .. 8043580 -  -3.4  -2.64155   CGGCCGTGAAATTCA          GCCGCCCGCT TCCTC AGGGAGCCGC          CTTCTGCTCGGGGCT  39 14
JRI60_RS32000 8042744 .. 8042775 -  -2.8  -3.35679   CTCGTCGATGGAGAA      CACGTTG-GGCGCGA CCC CCGCGCTACCGCGTG      GTGAGGGTGAACTCC  48 16
JRI60_RS31995 8042288 .. 8042302 -  -3.4  -2.83271   GGAGGGTCAGAAGGA               GGACAG CAG CCGGCC               CAGGTTCGTCGAGGC  41 2
         tgl NONE
JRI60_RS31985 NONE
        recO NONE
JRI60_RS31975 NONE
JRI60_RS31970 8037084 .. 8037122 -  -3.8  -2.90392   GATCCTGGAAGTACA  TGGCGC-CGCGGACC GTAGTGACGG GGTCCGGGAGCGTCA   AGGACGGCCGTCAGG  43 36
        glyQ NONE
JRI60_RS31960 NONE
JRI60_RS31955 NONE
JRI60_RS31950 NONE
JRI60_RS31945 8029448 .. 8029473 -  -9.7  -3.22298   GGGAGTCATCAGGAA         CCCGCCCTCGCC GAG AG-GAGGACGGG         TCTGAGGAATAAATC  61 103
JRI60_RS31940 NONE
JRI60_RS31935 8027357 .. 8027404 -   -22  -4.07568   GCCGCCCTTCGAAAA GGGCGAGGCCGGCGCCCATCCCC AGA GGGGACGAG-GCCGGCCTCGAGC AACCGAGCAGCCGTG 100 45
        tadA NONE
JRI60_RS31925 8023159 .. 8023169 -  -4.6  -2.90075   GGGCTCGGAACCATA                 GACC CCC GGCC                 TTAACCGACCCCCCA  44 106
        polA 8020452 .. 8020485 -  -4.5  -4.18506   GCAGGCTCAAAACAA     GGACGACGCGC GAAAACATCAGT GCGCGTCAGCC      CATGTCTTTCCCGCC  66 10
JRI60_RS31915 8019061 .. 8019074 -  -4.5  -3.01712   CCTTCTGCTTCAACA               CCCAA CGAC CTGGG                ACACTCATTTCGTCC  45 69
JRI60_RS31910 8018237 .. 8018249 -  -6.9  -3.93216   GGCAAAGGAGAAGAA                GCCCG CCC CGAGC                GATGGACGTGTGGCG  66 319
JRI60_RS31880 8013899 .. 8013914 -  -4.6  -3.53012   CGTGTGCCTCGGAAA              TCCGCG CCGG CGGGGA               AATTCCGAGGGCCCC  52 59
JRI60_RS31875 8013087 .. 8013143 -  -6.4  -3.01791   ACGCGTTCTCCAACA GCGGGACGCCGGACCACCTGAAGGAAG CGCT CTTCATCGAGGACGTCCGGCG-CAGGC TCGAGCCCGGGGGCG  49 312
JRI60_RS31845 7997709 .. 7997720 -  -5.8  -3.28712   GTCCCCCGCCGACAA                TCCC ATAC GGGA                 GTGCCTGTTGCCTCG  51 152
JRI60_RS31840 NONE
JRI60_RS31835 NONE
JRI60_RS31830 7993959 .. 7994009 -  -9.8  -2.70143   AGTCCAAGGAGATCA TCGGGGGCATCTTCCTCCTCGAGT GTCGG ACCCG-GGAGGAAG-CGCTCGCGA TCGCCAACGAGTGTC  54 110
JRI60_RS31815 7990826 .. 7990841 -  -3.2  -3.54424   CTGTATTGCGGCAAA              CACTCCC CGT GGG-GCG              GGCCCAATTCGTGCC  50 435
JRI60_RS31800 NONE
JRI60_RS31795 NONE
JRI60_RS31790 NONE
JRI60_RS31785 NONE
JRI60_RS31780 7982133 .. 7982143 -  -3.2  -3.61178   GGGACGTAGCTCAAA                 GGTA GAG CACC                 TGCCTGATAAGCGGG  53 241
JRI60_RS31760 7981043 .. 7981055 -  -2.6  -4.11216   CCTTCACTGGGAAAA                CGGA TGCCG CCCG                GATTTGTCGCATCGA  58 61
JRI60_RS31755 7980021 .. 7980051 - -16.9  -3.62046   GGACCTCGTGAAGAA      GCCCGGCTCTCCCC AGGA GAGGAG-GCCGGGC       TTCGTCATGCGCGGG  89 46
JRI60_RS31740 7977168 .. 7977186 -  -5.2  -2.73364   CTTCGAGGTGAAGGA             GACGAAGG ACG CCTACATC             TTCAAGGCGGACCTG  44 416
JRI60_RS31730 NONE
JRI60_RS31725 7974419 .. 7974436 -  -2.5  -3.87815   CGCGAGCCCGAGAAA             GGCGCGG AGGG CATCGCC              ACCGGCTTCATGGTG  57 441
JRI60_RS31690 NONE
JRI60_RS31665 7959910 .. 7959934 -  -9.1  -3.30124   CGCCATCCTGGACAA          GGCCCCTCGGC GAA GCCGTACGGCC          ATCGAGCGCAAGCTC  58 180
JRI60_RS31635 7954681 .. 7954721 -  -3.2  -3.70722   TGTACGAAGAGATAA CGCATCGCGTCAACCACGT CAAC ACCCC-CTGACGCGCTGCG  GCAATACCCTGGTCC  53 135
JRI60_RS31630 7953917 .. 7953943 - -17.3  -3.45571   GCCCCGAAACAGGAA        CGCCCGGGTGCC ACGA GGC-CCCGGGCG         TCTTCACTCCAGCAG  87 55
JRI60_RS31620 NONE
JRI60_RS31615 7950071 .. 7950100 - -11.5  -2.78596   CATCGTGCGAGCAGA       CGGCACG-CTCGAG TAC CTCAAGACGTACCG       CCTCTCGGCGGCGCA  60 186
JRI60_RS31595 7942099 .. 7942123 -  -2.8   -3.9461   GGGCCCGAAGAACAA          GGTGATGTTC GGCCA GAACGTCATC          GTGCGGCGTCCGGGA  57 101
JRI60_RS31580 NONE
JRI60_RS31575 NONE
        cobA NONE
        cysD NONE
JRI60_RS31560 NONE
JRI60_RS31555 NONE
        cysI 7932174 .. 7932215 - -17.4  -4.08216   TGAGCCCCCTGAAAA GGGAAAGGCCCTGCTTCC TCACCG GGAAGCAGGGCCTTTTTC  GGCTGGAAGCACCGC 100 59
JRI60_RS31545 7929556 .. 7929566 -  -6.8  -3.15861   TACCAGGCGCACGAA                 GCGA AGC TCGC                 CGGACTCATCGAGTC  51 229
JRI60_RS31530 7926736 .. 7926746 -  -2.4  -2.64616   TGCGCATGGACATGA                 GCGG CGC CCCC                 TCTATCACGCCCGGA  38 149
JRI60_RS31525 7925404 .. 7925416 -  -9.1  -3.53563   ATACCCTCCCCCAAA                GCACG CGG CGTGC                CGATGGCCGGGCAGG  64 158
JRI60_RS31520 NONE
JRI60_RS31515 7922217 .. 7922227 -  -3.2  -3.54475   GCTCCGAGGAGAGAA                 TCCC CTG GGAA                 GAGGGCGTCGCGGCC  49 257
JRI60_RS31500 7918991 .. 7919012 -  -2.3  -2.91452   ACGACCTCAACGACA           GC-CTCGT GGACTGG ACGAGCGC           CCGGGCCGCCCTGCG  40 60
JRI60_RS31490 7916488 .. 7916528 -  -3.7  -3.54741   CACCACCCGGTCAAA  GACGACCCGGAGCGGGCGG AGG CCACGGCCTCAGGGTTGCC  GCTCGAGGGGGACTG  51 15
JRI60_RS31485 NONE
JRI60_RS31480 7913518 .. 7913540 -    -9  -2.70932   CGGTGCCGCCAATGA           CCGCGATGCG GTG CGCTTCCCGG           TGAGCGGATTCGATC  51 105
JRI60_RS31460 NONE
JRI60_RS31455 7905878 .. 7905901 -  -8.8  -3.38768   CGAGACCACCTACAA          GGGCCAGGTGG AGC CCACC-GCCCC          GAAATCGTTCGTGGA  60 274
JRI60_RS31445 NONE
JRI60_RS31440 7903214 .. 7903247 - -21.8  -2.79183   CGCACTGCGACGACA     GCCCCGGCTCCGAGG TCTCT CCTCGG-GCCGGGGC     TCTTTTTCATGCTCG 100 60
JRI60_RS31430 7900704 .. 7900749 - -18.3  -4.52589   GTCGGGGACACAAAA GCCAAGGCCGGAAGCCGCTGA GCGA TCAGGGGTTTCCGGCCTCGGT GTTTTCAGGCCCCAG 100 252
        greB 7899517 .. 7899527 -  -6.8  -2.52676   GACCGCTGGAACCGA                 CCGT GCG ACGG                 GACTCCGACTGACGG  47 286
JRI60_RS31410 NONE
JRI60_RS31405 NONE
JRI60_RS31400 7896832 .. 7896864 - -19.1  -2.62192   GTGCACTGAATGAAG      CCCCCTCCCTCTCCC GCC GGGAGAGGGTCGGGG      TGAGGGTACCTGTCC  87 123
        dnaK 7893345 .. 7893388 - -22.7  -4.07568   GTTCCGCCCGCAAAA CG-GAAGGGCCGGAGATTCCC TCTC GGGAA-CTCCGGCCCTTCTCG GGGTTCAACCCTGGA 100 106
JRI60_RS31385 7892774 .. 7892797 -  -5.9  -2.87132   GCTCTGGCTGAGACA          GGAGGCGAC ATCGTA GTCCCCCCC           GCCGCCCCATTTGAA  48 87
JRI60_RS31380 NONE
JRI60_RS31375 NONE
JRI60_RS31370 NONE
JRI60_RS31365 NONE
JRI60_RS31360 NONE
JRI60_RS31355 NONE
JRI60_RS31350 7881192 .. 7881202 -  -4.6  -3.24188   GCAGATGACGATCAA                 CCCG TTC CAGG                 GTCTGTCGGAGGCCG  47 436
JRI60_RS31340 7880082 .. 7880125 -   -16  -2.87132   TGGCGGCCTGAGAGA GGCAGGTGGTCTTCACGC GGGCCCGT GCGCGAGGTCCACCTGCC CTGTTCCCACGGCAT  76 40
JRI60_RS31330 7877131 .. 7877144 -  -2.3  -3.72324   TACGGCCAGGAAGAA               GGGCT GGCC AGCCG                CCACTGCGAGCTGAG  51 204
JRI60_RS31320 NONE
JRI60_RS31315 NONE
JRI60_RS31310 7872278 .. 7872288 -  -3.2  -3.18264   CTTGCGAGCCATGAA                 TCCA CCT CGGA                 GGTGTGGCGGCCAGC  44 120
JRI60_RS31305 7871791 .. 7871819 - -17.4   -4.8622   CCGCTGAATGAAAAA        GGCCGTCGGACC AACAG GGTCCGGCGGCC        TTTCTCTTTCCAGCT 100 94
JRI60_RS31285 7865979 .. 7865994 - -10.4  -3.08934   GGAGAGAGGCGAAGA              CCGAGC GCTT GCTCGG               CGCCTCGCGACGGCT  62 40
JRI60_RS31280 NONE
JRI60_RS31270 NONE
JRI60_RS31265 NONE
JRI60_RS31260 7859681 .. 7859720 - -12.7  -4.09685   GGGTACCCGTGAAAA  GCGGGGCCCCGGACACC ACCGCG GGTGCTCGGGGCCTCGA   GTTGTGCTGACAGGG  83 144
JRI60_RS31255 7858950 .. 7858981 -  -9.4  -3.15544   GTGCACGGCCATGAA      GC-CTGAGCGGTGAA GTA CCCGCCGCTCAGCGC      CACTGTTCCTGGGAG  59 19
JRI60_RS31235 NONE
JRI60_RS31230 NONE
JRI60_RS31225 NONE
JRI60_RS31220 7849245 .. 7849264 -    -5  -3.53012   GCCGGCCCGTGCAAA            CCGGC-ACA TTC TATCGCCGG            AGGCGACAGCCTGAC  52 71
JRI60_RS31215 7848421 .. 7848458 - -10.5  -3.14132   GTGCTCGCTCACGAA   CAGGGCCGGGGCAACGGC GCC GCC-CTGCTCCAGGCCTG   CATCGATCACGCGGC  62 184
JRI60_RS31205 NONE
JRI60_RS31200 NONE
JRI60_RS31195 NONE
JRI60_RS31190 NONE
JRI60_RS31185 7843703 .. 7843726 -    -8  -3.62046   CGAGGCTCGCAACAA          CCTCCGGGCC ATGA AGCCCGGCGA           CCTGTGTCTCTTCTA  61 415
JRI60_RS31175 NONE
JRI60_RS31170 7841317 .. 7841340 -  -7.3  -3.06183   TCCATCTCCACTCAA          CGGGTGGCC TGAGCG AGCCCCCCG           CGTGAGGGGAGCGCC  51 47
JRI60_RS31085 7820576 .. 7820592 -  -2.9  -3.61715   CATCCCCTGGAACAA              CCCCTCA GGG TCAGGAG              AGGCTCGAGGCCACG  49 19
JRI60_RS31075 7818717 .. 7818745 - -12.3  -2.60075   GTCGGGTGAACGAAG        TGGCTCCCGGGAC GGT GCCCGGGGAGCCG        GGAAGCTTCTTTGAC  64 212
JRI60_RS31070 NONE
JRI60_RS31065 7817594 .. 7817619 - -16.2  -3.29013   ACTCGAACAACTGAA         CCCTCCTGCG CCCAAC CGCAGGAGGG          AGTCGATGCAGACGA  82 342
JRI60_RS31055 7815596 .. 7815608 -  -4.7  -2.78463   AGCTGCGTGAGTAGA                CGACG TCC CGGCG                CTCACCACTCCGGCA  43 102
JRI60_RS31030 7810322 .. 7810339 -  -4.1  -3.86015   GAGCTGGGGCACAAA             CAG-GGCT ATC AGCCGCCG             TGGAACCACAAGGAC  58 458
JRI60_RS31020 7807945 .. 7807970 -  -6.1  -2.72344   CGTGACCGGGAACTA         CCTGGAGTTCGG CCT CCACAC-CCAGG         CCACGAGCGGCAGCA  46 149
JRI60_RS31010 7802820 .. 7802834 -  -6.4  -2.85712   CTACATCGACAACGA               TCCGAA CTA CTCGGA               GCAGGACTTCGAGTA  48 485
JRI60_RS31000 NONE
JRI60_RS30995 7799254 .. 7799301 -  -9.1  -2.70932   GCTCGTCGGCAAGCA GCTCGGCCT-GGAGCGGCGGCGC CCCT GAGCC-CCGCTCAGAAGCGGAGC ACGTGGGCCATGGCC  55 13
JRI60_RS30985 7797712 .. 7797761 - -10.5  -2.62396   GACGGGCGCATACCA CACCCCACGCGCAGCCGCGCCCTC GAT GCGGAAGCGGA-GCGCGGGAAGTG AACAGGGAACGTCAG  57 37
JRI60_RS30980 7797090 .. 7797109 -  -4.2  -3.68073   GAGTGCACTGAACAA            GAGGGG CCCCATCT CCCCCC             ACCCTCCCCTTTCCC  54 109
JRI60_RS30960 NONE
JRI60_RS30955 NONE
JRI60_RS30950 NONE
JRI60_RS30945 7788351 .. 7788382 - -16.6  -2.78384   CCCCGTGCCACGACA      TCCGGCCGCGCG CCTCCTCT CACGCGGCCGGA       TGCGGACTCACTACT  77 36
JRI60_RS30940 7786872 .. 7786900 - -11.6  -2.89564   CGCCCATCCGACATA        CCCACCGCCGGG CCCTC CCCGGCGGTGCC        AGACACGAGCCCCTC  63 50
JRI60_RS30935 7785685 .. 7785713 - -10.2  -3.53012   GCCGCCGCCCTGAAA        CGGAGGCCGGAG CCGAT CTCCGTCCCCCA        GTCCCGGGCGGCGTG  67 70
JRI60_RS30925 NONE
JRI60_RS30920 7781763 .. 7781799 - -10.2  -2.87132   TCGTGTTTCGAGATA   CCCTCACCCCGACCCTCT CCC AGAGGGA-GAGG-GAGGG   GTTTCTCAGTCTCAG  59 43
JRI60_RS30915 7780500 .. 7780522 -    -9  -3.75024   CCGGACGAGGAAGAA           TCGGAGGCGA GCA CCGCCCCCGT           GCCCTAACCGCGCAC  68 29
JRI60_RS30890 7773431 .. 7773450 -  -9.2  -3.13403   GGCGGCGGACTAACA            CGGCCCGG GGCC CCAGGCCA             AGCCTCAGGGCTCCC  59 30
JRI60_RS30885 NONE
JRI60_RS30880 7771942 .. 7771954 -  -3.3  -3.06796   GGGTATCTGAGGTAA                CGCCG GAA CAGCA                CCCGTCCATCCAGCC  42 86
        ftsH 7769665 .. 7769710 - -19.2  -3.65812   TCCCGGGCAAGATAA TTTCGCCCTTCCAACACCGCA GAACA TGCGGCG-TGGAAGGGCGAAG GCAAGCCCGGAGGGC 100 65
JRI60_RS30870 NONE
JRI60_RS30865 7768684 .. 7768716 -  -3.4  -3.27408   GGCGAGGGAAACAGA      CCCTCACCCT AGCCCTCTCCCAG AGGGAGAGGG      AACAAACACGGTCAG  46 37
JRI60_RS30860 7766999 .. 7767050 - -10.6  -2.73875   GCGTGGGGAAGACGA CCGGTGTGGCCGCCCGCATGGAGG CCAT CCTCCTCACGCACGCGCGCACCGG CGAGACGCTCGGCCT  57 111
JRI60_RS30850 7765859 .. 7765887 - -17.4  -3.27298   CTCCGGAAGCACGAA        GGGCACGGCTGC TCCTG GCGGCCGTGCCC        TCTCTCTTTTCGCAC  86 59
JRI60_RS30840 7763840 .. 7763867 - -19.2  -5.54907   GCCAGAAAAGAAAAA        GGGCCGCCAGAC TCGC GTCTGGCGACCC         TCTTTTTGGAGCCGA 100 32
JRI60_RS30835 NONE
JRI60_RS30830 7760844 .. 7760859 -    -9  -3.02144   TCACGCTCGGGAAGA              TCGACG GTGG CGTCGA               AGCCCTGAGGGAGCC  54 287
JRI60_RS30820 7759172 .. 7759185 -  -5.2  -2.72463   ACCCATCGTCAAGCA               GGGC TTGATG GCCC                GTTTCCATCCCGACA  45 206
JRI60_RS30795 7754715 .. 7754728 -  -3.7  -3.17527   CAGCGATGAGCAATA               CCGCG CTCC CGCCG                ACGCGAGTGGCTCAG  45 271
JRI60_RS30785 7753901 .. 7753917 -  -4.3  -3.52906   TCACTCCCACAAAGA              GGACACC TAC GATGGCC              ATCAGTGTCAGCCCG  51 356
JRI60_RS30755 7748817 .. 7748829 -  -4.7  -3.35644   GTGACAACGAGAACA                CGGCC CGA GGCGG                AAGCGGGAGGACGGC  51 41
JRI60_RS30745 7747188 .. 7747202 -    -7  -3.53012   CCCGCGCGGCGCAAA               CGCGTG CCG CCCGCG               GGCAGCCGCCAGAAG  58 135
JRI60_RS30735 7744841 .. 7744858 -  -6.9  -3.14132   TTCTGGTTCGAGGAA             CACTGGG AGAC CCCCGTG              GCCACGCTGCGCGCG  51 150
JRI60_RS30720 NONE
JRI60_RS30715 NONE
JRI60_RS30710 NONE
JRI60_RS30705 7738836 .. 7738867 - -14.5  -3.21276   GGGCTTCTGACAACA      CGGACTCTCAGGT GCGGAA ACCTGGGAGTCCG       TTGGGGATCGGTGCT  76 43
JRI60_RS30690 7736225 .. 7736239 -  -2.8  -2.52464   GGTCGGCGCAAGTCA               CCCA GCCGATA TGGG               CTGTAGGCCGCCTGC  39 71
JRI60_RS30685 7735547 .. 7735565 -  -5.2  -3.01712   CCGGGCGTGCGAACA             CCGCAC CACGCGC GCGCGG             GAAGAGGCCGAGGGG  47 45
JRI60_RS30680 7733601 .. 7733611 -  -2.4  -2.76418   TCTCGAGACAAACAT                 GGGG GGC CTCC                 GGCGGGGCTCAGGCG  38 42
JRI60_RS30675 7732215 .. 7732243 -    -6  -3.61398   GCTGGCTCCGAAGAA       CG-CGAATCCGGC CGAC GCCGCATTCATCG        GCTGGCGGACCGACA  57 505
JRI60_RS30660 7728372 .. 7728390 -  -2.2  -3.28712   CGCGTGCGTGGACAA             CCGGTGCG TGG CGCGCAAG             GCGTCCGGCGCGTGC  45 428
JRI60_RS30625 7720852 .. 7720862 -  -6.8   -3.8186   GACTTGAAGTAACAA                 GCTG GGC CAGC                 GGGAGCGCTCACGAC  64 139
JRI60_RS30620 7720296 .. 7720308 -  -2.6  -3.36273   CGTCTCCAACACGAA                GCAC CCGCC GCGC                CCCCTCCGACTCGTC  46 129
JRI60_RS30615 7719979 .. 7719989 -  -5.4  -3.32022   GTCTTGAGACATGAA                 TCCT CCA AGGA                 AAGTTCGTGAATGCT  51 71
JRI60_RS30610 7719328 .. 7719340 -  -9.1  -2.71144   GATCCCCTGCAATGA                GCGTC GTG GACGC                GATGGCATCGATGCG  55 223
JRI60_RS30605 7717620 .. 7717638 -  -5.3  -3.91897   CTCTTCAGTGACAAA            TC-GCACC ACAC GGTGCTGA             CGCGCGCCTTCTCCG  63 90
JRI60_RS30595 7713373 .. 7713385 -  -3.3  -3.82084   CGGGAATATGAAGAA                GCGTG AAG CACCC                AGGGGCCATGCGGTT  56 40
JRI60_RS30590 7712473 .. 7712491 -  -5.9  -3.14132   TTTGGGTGTCATCAA             GGTTCGC TCGCG GCGGACC             ATGACACGGATGACG  51 86
JRI60_RS30585 NONE
JRI60_RS30580 7710926 .. 7710954 -  -6.7  -3.80511   AGAAAGCATGAAGAA       CATG-CGCCGTC TGCTCT GTCGGCGACATG        TGCGCACCGAGGTGT  64 132
JRI60_RS30575 7709051 .. 7709061 -  -8.2  -2.80016   GTCCATCACGAACGA                 GGCC ACG GGCC                 ACACCGTGACGGAGG  51 198
JRI60_RS30565 NONE
JRI60_RS30560 7706615 .. 7706630 -  -6.1  -3.03159   TCAAGGCGCCCAAGA              CGCTG GTGAAG CAGCG               TGAAGCCCCGCGCGG  49 103
JRI60_RS30550 7705628 .. 7705639 -  -7.2  -2.69468   CAGGCTGATACAGCA                CGCC CTCA GGCG                 GCGAGCGCCTTGTCG  48 19
JRI60_RS30535 NONE
JRI60_RS30530 7701226 .. 7701242 -  -7.9  -4.45544   CGTCAGGAAGTAAAA              CGGCTGA ACA TCGGCCG              TGGCGCGGCCATGTT  76 204
JRI60_RS30510 7697376 .. 7697387 -  -5.8  -3.28924   GACGTCGGGGCAGAA                GTCG TCCA CGAC                 CAAGAAGGAGATTTC  51 246
JRI60_RS30505 7695197 .. 7695218 -  -4.3  -2.87931   TGCATGTTCTACACA           CCTCACTGG ATGT CCAGCGGAG            ACGAAACGGGTTGCA  44 6
JRI60_RS30500 7693971 .. 7693981 -  -4.6  -2.71712   CTCGCTTGTTGAAAG                 GCGC TCA ACGC                 TCTTGAAGGAGGGGC  43 19
JRI60_RS30495 7692755 .. 7692767 -  -3.3  -3.06183   GCCAGGCCCACCCAA                CCCAG CGG CCGAG                CCCTCATGTCAGTTC  42 29
JRI60_RS30490 7690436 .. 7690448 -  -4.7  -3.07043   TGGAGCACCTGAACA                CGCGC TCC GAGCG                GCTTCGCCCTCAAGT  45 258
JRI60_RS30480 7685896 .. 7685909 -  -2.3  -3.85878   CAAGAAGACCAACAA               GCCCC TGCC GAAGC                TGCGCCCCATCCTGA  55 260
JRI60_RS30465 7683679 .. 7683707 -  -6.6   -3.9461   CGCGGCCAAGAACAA        GGAGCTCAGCGC CAAAC GCGCCGAGGTCA        TCGTCAAGGAGCTGG  65 196
JRI60_RS30455 NONE
JRI60_RS30450 NONE
JRI60_RS30445 7680036 .. 7680057 -  -9.3  -3.45023   CGAGGAGGAGCAGAA           CCCGGAGGC GGAG GCCACCGAG            TAACGCCCCCTCAGG  63 36
        thiC 7673741 .. 7673761 - -13.9  -3.06796   CCTCAGGGTAGTCAA            CGGGCGCGG TCA CCGCGCCCT            CTCCTCCCCATTCTC  72 113
JRI60_RS30415 7673264 .. 7673312 - -13.9  -3.23393   GCTGAGCCCAGAAGA CGACGGGCGAGGACCGGACCCC TGGTTG GAGATCCC-TCCTCGCCCGTGG CGCGACGCCTTCTCC  75 48
JRI60_RS30400 NONE
        hisD NONE
JRI60_RS30390 NONE
        hisH NONE
JRI60_RS30380 7665886 .. 7665899 -  -2.4  -2.70932   TCGTCTCCCGAACGA               TCGT CGTCAT ACGA                ACTCCCGCGCCACTT  38 18
JRI60_RS30375 NONE
        hisF NONE
        hisN NONE
JRI60_RS30360 NONE
JRI60_RS30355 7661625 .. 7661635 -  -4.6  -3.19463   GCCACTACCGACGAA                 CAGC ACG GCCG                 CATCGAGCTCGCGCT  47 53
        lpdA 7654939 .. 7654981 -    -4  -3.73909   CACAGATGAAAAAAC CGGATCCGGAGCGG-GTGGA TCGCT TCCTCTCCGC-CCTGCCCCG CGACGTCCAGTACGT  58 495
        lipA NONE
JRI60_RS30315 NONE
JRI60_RS30310 NONE
        lipB 7649099 .. 7649130 - -11.5   -3.2614   CACGCTGGACATGAA      CCACCCGGGAGGC AGCCTG GGCTACCGGGTGG       AGTGCGACGGCAGAT  65 394
JRI60_RS30285 7644973 .. 7645003 - -16.9  -3.93166   CCCTGAAAAAAGTAA      GCCCGGCAGGTCCC ACTG GGGACCC-CCGGGC       GAAAGACTTCGATGC  95 68
         rnr 7641367 .. 7641385 -  -4.4  -4.48987   GGTCTACAATCAAAA             CAACACCG GCA CGGCGGCG             GATTACGTGCAGGCC  74 131
JRI60_RS30260 NONE
JRI60_RS30255 7634556 .. 7634613 -  -4.8  -3.64703   GCCCGCGGACGGAAA GGTCTCCTGGACCA-CGCACGCCGACCTC GCG GAGG-CGGCA-GCGGTGGTTCTGACGAAC GAGGGCCGGTACGAC  55 366
JRI60_RS30245 NONE
JRI60_RS30240 7631536 .. 7631550 -  -7.1  -3.21099   CCCGGCGAGGAGGAA               CCGTG CTCAC CACGG               GGGACGTTGCCTCTG  52 257
JRI60_RS30235 7629586 .. 7629618 -  -2.6   -3.6106   TGGAAGAGGTGGAAA     TCGCCCACCTGTCCC GCCA GGTGCAGGTGCG-GA      GCAGCGGAGACGGAC  51 447
JRI60_RS30220 7623559 .. 7623578 -  -6.4  -3.09015   TCGACAGTGATGGAA            GGGACGCGG AGA CC-CATCCC            CTCCTGCTGGATCGC  49 263
JRI60_RS30200 NONE
JRI60_RS30195 7617748 .. 7617768 -  -3.9  -2.65264   GCAGGAGGTAGAGGA            TGAATCGCT GGT AGCGCATCA            CGCCTCCTTCCGCGG  40 23
JRI60_RS30190 NONE
        ugpC 7615773 .. 7615793 - -15.5  -3.15544   CGCGAGCTCGAGCAA            CTGGTCCGA TGG TCGGACCAG            TTCGAGCCGAGTGCT  78 57
JRI60_RS30180 7612432 .. 7612464 - -18.5  -3.32769   CGCTGAAAGGAGGAA      TGCCGCTCGAGGG ACAGGAA CCCCCGAGCGGCA      TTCAACTCACTTCAC  93 32
JRI60_RS30175 NONE
JRI60_RS30170 7607739 .. 7607772 -  -2.3  -5.28778   AGCATTGAGAAAAAA     CAATATCCCCTCTCCC TCT GGGAGAGG-GACGGGG     TGAGGGTATAAGGAT  89 260
JRI60_RS30155 NONE
JRI60_RS30150 NONE
JRI60_RS30145 NONE
JRI60_RS30140 NONE
        nadD 7599506 .. 7599550 -  -8.5  -5.07652   TCGGCCAAAAGAAAA TCTGGCCGCTCCCACTTCG AGAAAGA CGAAGTGGGAGCTTCAAGC GGAGGAGCGAGGAAC  89 49
JRI60_RS30130 7596624 .. 7596646 -  -6.1  -2.59431   GTCCTCCAGAATGTA           GGGCTCCGG AAGAA CCGGGGCTC           ATCCCACCGTCGCGC  46 24
JRI60_RS30125 7592490 .. 7592509 -  -9.2  -3.44051   CCTGCACCAGGAGAA            GCCGGCCG AGAT CAACCGGC             TCCTGGTGGAGTGGC  61 17
        gcvA 7589233 .. 7589252 -  -3.4  -4.59773   TTCCACCCCCAAAAA            CGTTTCCG CGTC CGGCACCG             TAGGCCGCTCGGCCC  71 78
JRI60_RS30105 NONE
JRI60_RS30100 NONE
JRI60_RS30095 7587558 .. 7587571 -  -3.7  -3.54029   GGTGAGCAAGGACAA               GCGGG TGCT CGCGC                TCGCCGGACGGCATG  50 121
JRI60_RS30085 7585569 .. 7585600 -  -2.8  -3.59979   CCCGGGGAGTTCAAA      CGCCCGGACGGCCA TCTG CGGCAATCCGGATA       ATCCCCGTGGATCCG  49 158
JRI60_RS30080 7583607 .. 7583623 -  -2.1  -2.87468   CCGGAGGAGAGTAGA              CCCCGAG GCA CTCGGCT              ACCCGGCGCAGGCCT  40 24
JRI60_RS30075 7582678 .. 7582704 -  -5.1  -3.90291   AGGTGGTCAAGTAAA        GCGGACGACCTC CGAC GAGGTC-CCCGG         GGTCCGGTGTCCCCC  63 98
JRI60_RS30065 7579891 .. 7579923 -    -4  -2.80816   CGGTGAGCCAGCAGA     TGCGCGCCTTCATCC AGTC GGCCGA-GACGCGCC      AGACGGGCGAGGTGG  43 2
JRI60_RS30050 NONE
JRI60_RS30045 7574071 .. 7574105 - -12.1  -3.25015   CTGAAGGAGTACGAA    CCGGCCCCCG-CCC ATTGACCG GGGTCGGGGGCCCG     TTTCCGTTCCGCCGC  71 44
JRI60_RS30030 NONE
JRI60_RS30025 NONE
JRI60_RS30020 7566474 .. 7566484 -  -2.4  -3.22475   GCCACGGTCAGAAGA                 GCGC AAG GCGA                 TACCCCAGGTGCAAG  44 7
JRI60_RS30015 7563503 .. 7563518 -  -4.6  -3.21099   CTTCTTCACCACCAA              GCGCTC GGGC GAGGGC               ACGGGGCTGGGCCTC  47 206
JRI60_RS30000 7557784 .. 7557813 - -20.7  -3.66178   TTCTGGAACGTCAAA       GGGGCCAGCCGGG TGAT CCCGGTTGGCCCC        TTTGCTGGGTCCACG 100 119
JRI60_RS29980 NONE
JRI60_RS29975 NONE
JRI60_RS29970 NONE
JRI60_RS29965 NONE
JRI60_RS29960 NONE
JRI60_RS29955 7545884 .. 7545911 -  -8.4   -3.1552   CCCCACCTATGAAGA        GGTGTGCTCCGGC CGC ACCGGC-CACACC        GAGGTGGTGCTCGTG  56 416
JRI60_RS29945 7545052 .. 7545078 -  -9.3  -2.87132   TCGCCGCCGGACAGA         CCACGCTCGCC GAGCT GGTGCGCGTGG         TGCCCTACCGGCAGA  56 112
JRI60_RS29935 7541449 .. 7541493 -  -4.7  -3.04144   GGGTCAGGGGGAAGA CCCTCACCCTGACCCTCTCCC AGA GGGAGAGGGGATTGCTACGGG ATGACCTCCACCGCG  45 19
        mtgA NONE
JRI60_RS29920 7538840 .. 7538886 - -10.1  -3.21099   CCTGTTGATGATCAA CTCGGCGGCGCACC-TG-CTGAC GGA GTCGGCCATGGTGCGCCACCTGG AGTGCGTCGCCCGTA  59 447
JRI60_RS29900 NONE
JRI60_RS29895 NONE
JRI60_RS29890 NONE
JRI60_RS29885 7529168 .. 7529216 - -12.9  -3.14132   TCCCCTCGTGAGGAA GACGGGGGTGGCCGCCAGCATGG CGA CCGTCACGGCGGCCCACCCCATC ACGGCCTCACCACTC  72 32
JRI60_RS29880 7526552 .. 7526562 -  -6.8  -3.17075   CGGTCGTGAATGGAA                 CCAG GAC CTGG                 ACCACCCCGAACGGG  51 450
JRI60_RS29865 7523398 .. 7523446 -  -8.8  -3.43492   CGAGACGTATGACAA CTGCGGCAGGGATTGCGGCCC CTGCCCCT GAGCCTCA-CCCGCGCCGCAG CAGGCCGCGCGCGAG  60 11
         udk NONE
JRI60_RS29850 7519847 .. 7519874 -  -7.6  -3.18912   GCATCCAGGGACGAA        GGCTCACGGGCCC CTG AGGCCCCCG-GCC        CCGGTCACCCCACCG  54 30
JRI60_RS29835 NONE
JRI60_RS29830 7513600 .. 7513633 -    -8  -3.05384   TGCTTGGCGAGGCAA     CTGGAAGGCCCGCC TGCATG AGCGGGCCCGCGAG      CTGGGTTTTGATTCG  52 438
JRI60_RS29810 7507471 .. 7507520 -  -9.1  -2.53876   GCCTACCCTAACCCA CTCCCCACGCACGCGCTCCCCTC ACTC GAAGGGAGCGCGTGAACGTCAGG TCGTTCCGCCCTCTG  54 21
JRI60_RS29805 NONE
JRI60_RS29800 NONE
JRI60_RS29795 7504501 .. 7504528 -  -7.6  -4.56597   GCCCTCCCGGAAAAA        GGGCCACCAG GGTAGGGA CGGGCGGCCC         GGCTTTCAACAGGCC  79 91
JRI60_RS29790 7503456 .. 7503471 -    -9  -3.31144   CGTCGATGGCGAGAA              GCATGG CTCG CCATGC               AGTCTAGCGGGGCCG  61 29
JRI60_RS29785 NONE
JRI60_RS29780 7501387 .. 7501441 -  -6.9  -3.84271   CGAGAAGACGAAGAA GGCGTTGGCGATCGCCACGCAGCTCC TGGA GGAGCAGC-CGGCGCTCGAGGACGAC GAGGAAGCGGTGGCC  64 131
JRI60_RS29755 7494724 .. 7494738 -    -7  -3.01712   CCTCGGCGGCGAAGA               TGGCGG CGG CCGCCG               GACGCAAGCCCCGCA  51 486
JRI60_RS29740 NONE
JRI60_RS29735 NONE
JRI60_RS29730 7491297 .. 7491343 - -15.1  -2.78384   TCGGTGTCCATGACA GGAGAGCCTCAGGACGGAGCGG AGAT CCGCCCCGCCTTG-GCCCCTCC GCCCCTTTGTCAGTC  72 35
JRI60_RS29725 NONE
JRI60_RS29720 NONE
JRI60_RS29715 7486144 .. 7486180 -  -6.6  -3.79906   CTACCTGCAGAAGAA   GTTCAGCAC-CGTGCTCG ACC CGAGCAAGAGCGCCG-AC   GACGTGAGCAAGGGC  62 50
JRI60_RS29705 7484610 .. 7484634 -  -3.4  -4.29738   CCATATCCACGAAAA          TGGACACGCG CTCAC CCCGCGGCCA          TGGAACGCCCTCGAA  63 56
JRI60_RS29700 NONE
JRI60_RS29695 7482523 .. 7482539 - -12.3  -3.31144   GGCCGAGGGCGAGAA              GGAGCTG GCA CAGCTCC              TGGACTTCGCGAAGG  67 134
JRI60_RS29675 NONE
        hemB 7478343 .. 7478355 -  -4.7  -2.53911   CGAACCGTCAACCCA                GCAGC TTC GCGGC                TTCGAGCGAGTGGTA  42 5
JRI60_RS29665 NONE
JRI60_RS29660 NONE
JRI60_RS29655 7474816 .. 7474854 -  -9.6  -4.13654   CGCTGAAACGACAAA  GCCCGGCAC-ACAG-GGC GAACA GCCACCGCCGTGCCAGGC  CCTGTCAGAGTGAGG  75 64
JRI60_RS29645 7471465 .. 7471500 -  -7.4  -3.57144   CCCGTGAGCGCCAAA    CCCGCCACCGAGCAGG AGCG CCAGCTCAACCGCAGG     GCCGAGGTGCTCATC  58 162
JRI60_RS29630 NONE
JRI60_RS29625 NONE
JRI60_RS29620 NONE
JRI60_RS29615 NONE
JRI60_RS29610 NONE
        tssB NONE
        tssC 7456031 .. 7456041 -  -6.8   -2.5602   GAACGAGCGAACTGA                 GGCA TGG TGCC                 CTCCTTCTCTTGATT  47 71
JRI60_RS29595 NONE
        tssK NONE
JRI60_RS29585 7453774 .. 7453789 -  -3.2  -3.05596   CAGCCGCTCATTGAA              GGTGCT CTCC ATCACC               CCTCCTCATCTTCTT  42 21
JRI60_RS29580 NONE
JRI60_RS29575 NONE
JRI60_RS29570 NONE
JRI60_RS29565 NONE
JRI60_RS29560 NONE
JRI60_RS29555 7445024 .. 7445038 -  -2.1  -3.06796   CGTCAGTCGATTCAA              GCG-TG CGCT CATCGC               GGCACCTCGCGGAAG  41 19
JRI60_RS29550 7444197 .. 7444233 - -11.4  -3.28924   CACCGCGGTGGAGAA    GGCGCTCACGCAGGCC GAGGA GGCCCGGACGCGCGCC    GAGAACGAGCTCACC  67 294
JRI60_RS29525 7434443 .. 7434487 -  -6.2   -2.6927   AGGCCCCACACACGA GTCGAGAGGGATGAGGCGCT GGAGG AGCGCAGCCCCCCTCGCGAG GCTGCGTCACCGGCC  47 52
JRI60_RS29520 NONE
JRI60_RS29515 7432130 .. 7432162 -  -5.6  -3.61398   TGTCGTCTTCAAGAA     GAGACCTCGCGATGGC CCG GACACCGC--GGTCTC     ACGGCGCTCCCGGGC  54 100
JRI60_RS29510 7431329 .. 7431342 -  -5.2  -3.53224   TACGCCTCGCTGAAA               CCCG AGCTCG CGGG                CACGCAGGTGCAGCT  53 87
JRI60_RS29500 7428585 .. 7428617 - -21.3  -3.73936   AAACCCCACCAACAA      CCCCTCCCCTCTCCC TCT GGGAGAGGGACGGGG      TGAGGGTATCCGCCC 100 71
JRI60_RS29490 NONE
JRI60_RS29485 7424976 .. 7424988 -  -7.7  -3.47227   GCCTAACTACCAGAA                CTTCC CCC GGAAG                AGGAGTCCTCGATGT  59 0
JRI60_RS29480 7424498 .. 7424527 -  -5.6  -2.87132   GTCGGGGTGGAGACA       TCACCGCCACGC TGGACG GCGTGACGCTGC        GCGGCACGCTCTACG  46 310
JRI60_RS29470 7423026 .. 7423042 -  -5.7  -3.15544   GTCCACGGTCATCAA              CCCTCGA CCA CCGTGGG              CCCGGACGCCGTCAC  49 5
JRI60_RS29465 7421948 .. 7421994 - -10.7  -3.16564   GCTCGAGGTCACCAA CCGCGTGGAGGCCGTCACGGA GGGCA TCCGCAAGGGCCTCATCTCGG TGTGACGCACCGGGG  64 43
JRI60_RS29445 7419012 .. 7419041 -  -4.2  -3.07816   CCGGCAGCGAGGGAA       CCATCGGGCGGCG CTACC CTCC-CGCGATGG       CCGGGATGAGGGTGA  44 9
JRI60_RS29440 7418400 .. 7418419 -  -5.6  -3.54129   CATACGGGTCCCAAA            CTCCCTGC GCCT ACAGGGGG             GTGTTTCCTCCGTGC  54 160
        cysC 7417558 .. 7417598 - -16.2  -3.87815   GGGCACCTCTATAAA CGAAGAACCCCCGGGCTGC CCGT GCAACCTGGGGGTCCT-CG  AGCTCGTTGTCTCAC  91 74
        larE 7416568 .. 7416580 -  -6.9  -3.26545   CTTACACAGGAGGAA                CCCGG GGG CCGAG                ATACCCTCACCCCGA  54 101
JRI60_RS29425 7415930 .. 7415940 -  -5.4  -2.69649   ACAGGTGCACACAAG                 GTCT CAC AGAC                 GCATCGGATCGCAAG  45 105
JRI60_RS29420 NONE
JRI60_RS29410 7413843 .. 7413865 -    -4  -5.00616   CGGGGGGGCAAAAAA           GCGGCCCG CTGCCTC CTGGCCAC           GTCCTCCTACTTCTT  81 32
JRI60_RS29405 7413077 .. 7413106 -  -2.2  -3.63744   CCGTCCGCCAAAATA      TAGGCTCCGGCTGC ACGC GCAG--GAAGCCCA       TCTCGGATATGTCGT  51 90
        clpX 7411646 .. 7411693 -  -3.5  -2.62184   CGGCTCGGGACAGTA GACCCT-CACCCCAGCCCTCTCCC AGA GGGAGAGGG--GGCATACACGGTC ATGCCGACTTCTTTT  40 24
JRI60_RS29395 7410907 .. 7410925 -  -8.8  -2.75481   CCCCAATGCCAAGCA             GCTGGTGG CGA CCACGAGC             ATCGACAACCAGACC  51 376
JRI60_RS29380 7404409 .. 7404449 -    -6  -3.53091   ACGCGTTTTCGGAAA GCATCGC-CCCCAGCGAGC GCCC GCTCGCTGGGCTGCCTTGG  CGATCAGCCGTAGCG  56 29
JRI60_RS29375 NONE
JRI60_RS29370 7402850 .. 7402876 -  -3.7  -3.67775   ACCTGTACTGAAGAA        CGAGCTCACGCG AAGA CTCGTGAACT-G         TCCGACACCGTGCGC  54 47
JRI60_RS29365 7401971 .. 7401989 -  -6.7  -3.07233   TCAGAAGCTCGAACA            CCGCGCTC AGGC GAGCG-GG             AAGCTCAGTCGGCAC  51 13
JRI60_RS29360 7400290 .. 7400308 -  -6.7  -3.93288   TGTGAGTCAAGCAAA            GAGGG-GG TATC CCACCCTC             TGCCTCGCGCGCTGC  66 190
JRI60_RS29355 7398041 .. 7398087 - -13.7  -2.89564   CTGGGATTCGAGAGA CCCTC-ACCCC-GACCCTCTCCC GAA GGGAGAGGGAGTGGGGTTGTGGG GGACGGTCAGGCCGC  71 32
JRI60_RS29340 NONE
JRI60_RS29335 NONE
JRI60_RS29330 7393348 .. 7393364 -  -7.9  -3.16564   TGCCGAGCTCACCAA              GCACGTC GAG GCCGTGC              TGGAGGGCATCAACG  54 519
JRI60_RS29315 7389320 .. 7389330 -  -8.2  -3.81488   GTTCCTCAAAGAGAA                 GCGG AGG CCGC                 GGCCAGCTTCTCCTG  68 5
JRI60_RS29310 7387921 .. 7387969 - -18.7  -3.05715   AAGGCCTCCAGGTAA CTCCTGGCCAACCCCCGGCGGAG TAT CGCGGCCGGGGGTCGGCGGAGAG CCCTGCGCTACTTCA  90 33
JRI60_RS29295 7384470 .. 7384482 -  -3.3  -3.61398   TTCTCTTGGGAAGAA                CGGAC CTG GTGCG                GAAGCTGCGCGCCCG  53 214
JRI60_RS29250 NONE
        selA NONE
JRI60_RS29240 7370398 .. 7370423 -  -4.6  -4.07687   AGGCTGTCTGGAAAA         CTACAGACGG AAGGAG CCGTCAGTCG          TCGAGCAGCTCCACG  62 19
JRI60_RS29235 7368453 .. 7368463 -  -2.4  -4.26076   GCACCCGTATCAAAA                 CCCG TCC CGCG                 CCCCGCGTCGACTCC  62 52
JRI60_RS29230 NONE
JRI60_RS29225 7366214 .. 7366234 -    -6  -3.62597   CTGATGGGTGAAGAA            CACCCGGG GGAGG CCCGGTCG            CTCAGCGGCGGCTTT  59 27
JRI60_RS29220 NONE
JRI60_RS29215 NONE
        sugE 7363845 .. 7363885 -  -3.8  -3.84406   GCCCGAGCACAACAA CGGCTTCTCGCGGGC-CTC GCCC GAGCGCCCGAATGACTCCG  TCTTCGTCACGACGG  56 520
JRI60_RS29185 7358303 .. 7358348 -  -2.2  -3.29144   CTACGTGGTGGACAA GGTGCGAGGGGGCTCCGCGG CCGAGT CCGAGTTCTCCCCCGGCACC CTGCTCTCCTCGGGC  45 369
JRI60_RS29140 NONE
JRI60_RS29135 NONE
JRI60_RS29130 NONE
JRI60_RS29125 NONE
JRI60_RS29120 7343330 .. 7343372 - -11.1  -2.52795   AAGCGGCGCAATGTA GCAGCTTGCCCCCCACCGT CAAGC ACGGCGGGAGGGTGGCCGC TTCACTCCGCGCGAT  59 27
        rplC 7342414 .. 7342446 - -18.5  -3.51406   CAGCAGAAACACGAA     CGCCCCGC-CCGGT GGGTAG ACCGGAGCGGGGCG      TCGGAATGGGGGCCC  95 126
JRI60_RS29105 7340612 .. 7340625 -  -3.1  -3.01712   GGTTTCGGTCGAAGA               TGCAGC CAA GC-GCA               TCGTTCTTGGACTCG  43 363
JRI60_RS29080 7338247 .. 7338260 -  -5.9  -3.16564   TGCTCACGGGAGCAA               GGAGC TTGG GCCCC                GTTGTAACAGCTAGC  51 103
JRI60_RS29075 7337002 .. 7337018 -  -8.7  -3.61715   GATCGTGGGGAACAA              CGAAGAC GGC GCCTTCG              TGTGGAAGGCCGGGA  64 389
JRI60_RS29065 7334886 .. 7334910 -  -3.4  -3.33815   AGGGGCGCGAATCAA          CGGTGCCCAG CTTAT CAGGACATCG          CCGCACAAGAGAACG  46 80
JRI60_RS29060 7333850 .. 7333873 - -13.2   -2.7185   ACGAGCCTGGAATGA          GC-CTTCGGCC CGT GGCCGAAGCGC          GAACACCCTGCCCTG  67 138
JRI60_RS29055 7331683 .. 7331711 -   -16  -5.29385   AAGGGAACGAAAAAA        GGGGCTGCCCCC TCGCG GGAGACAGCCCC        TGACAGCTCACGCGG 100 53
JRI60_RS29045 NONE
JRI60_RS29040 7328405 .. 7328422 -  -2.5  -3.95584   GCTCGAGCAACGAAA             CGGGGCG ATGT CGCGGCG              TCAGGACGCGGACGT  56 26
JRI60_RS29035 NONE
JRI60_RS29030 7326595 .. 7326630 -  -5.5  -3.14132   CCGTCCGGCGAGGAA   GCCCATCAACGCGCGCA CCCG TG-GCACCTTG-TGGGC    CTCGCGCGAGGCCAC  49 71
JRI60_RS29025 7325455 .. 7325498 - -15.2  -2.52543   ATGGGGGCGAACGTA CCGCACCCCAGCCCTTCCCC AGAG GGAGAGAGACTGGGGCGTGG GGTGAAGCGGCACTG  71 44
JRI60_RS29010 7322551 .. 7322593 -  -3.3  -3.53012   GTCTGCGCGCGGAAA GGCTCGTGGCACC-GGAGACG CCG CGAATGCGGGTGCCACGT-CC TGGCTGATGAAACGC  49 54
JRI60_RS29000 7319142 .. 7319196 - -12.1  -2.57564   TGAGCCCCTGAGAAC CAGGTCGGCACGCCCACTGACACGTC AACT GACACG-CAGCGGGCGCACTGACACG TCGGCTGGACGTGGA  64 55
JRI60_RS28995 7318401 .. 7318411 -  -4.6  -3.18383   AGCGCGAGCGAGGAA                 GCCC TCC GGAC                 CCTCTCCGAACGAGC  47 138
JRI60_RS28945 7308991 .. 7309021 -  -9.7  -2.99471   TGATCGCGATACACA      CCGAGGCTGC-GGTG ATA CTCCAGC-GCCTCGG      AAAAGCATTCATTCT  57 234
JRI60_RS28940 NONE
JRI60_RS28935 7306305 .. 7306329 -    -5   -4.4767   CCATGGAGGAGAAAA          TTCGCCAATG CCCTC CCTTGGCAAA          GGCATCAATGCTGAG  72 367
JRI60_RS28930 7305343 .. 7305365 -  -3.4  -3.78934   CTGGTCCGACAAGAA           CCGGTG TTTCAACTAGG CACCGG           GCAGCACGAAGATCC  56 15
JRI60_RS28910 7301637 .. 7301649 -  -2.6  -4.56597   TTCCGCCGTCAAAAA                CCCG GGGAG CGAG                CGAGGGGCCGCGGAT  67 158
JRI60_RS28905 NONE
JRI60_RS28900 NONE
JRI60_RS28895 7297973 .. 7298009 - -18.8   -3.2218   TTGAACACGCACGAA   GGGGCGGCACCCGGCGCA TGC TGCGC-GGGC-CCGCCCC   TGGTGTCCTTCACCT  93 55
JRI60_RS28890 NONE
JRI60_RS28885 7292535 .. 7292556 -  -7.3  -3.62275   ATCGAGGACCCTAAA           GAGTGGAAA AATT TTCCCACCC            GGGTCGGTAGGTTAT  58 37
JRI60_RS28880 NONE
JRI60_RS28875 7290092 .. 7290119 - -11.2  -5.02074   CGACCCTCTAAAAAA        GACCCTCTCCCC ATCA GGGGAGAGGGGT         TCCACACGTTGAGAA 100 61
        cglE 7289297 .. 7289331 -  -5.4  -3.05963   ATTGGCAGGCGAACA     GGAGTGCCCGAGACAG CTT CGGGCTCGGCCTCGCC     ATCACCAAGGCGCTC  47 169
JRI60_RS28860 NONE
JRI60_RS28855 7283871 .. 7283884 -  -8.1  -3.08992   ATGGAGTTCAAGATA               GGAGC GCGC GCTCC                CCACCGCTAGCGAGG  54 118
JRI60_RS28850 NONE
JRI60_RS28845 NONE
JRI60_RS28840 7279199 .. 7279211 -  -5.5  -3.05343   GCGAGACCGGCAAGA                GCACC GTG GATGC                GGTGGTGACGGCCGC  47 325
JRI60_RS28820 7273072 .. 7273102 -  -9.7  -3.32844   GGTGTCACTCCACAA      GGCGGGTAACACGC TCCT GCGGGTCACC-GCC       TTCGCGCCCAGCGGC  61 114
JRI60_RS28810 7269862 .. 7269893 - -10.8  -4.16182   GCAGTACAAAGCAAA      CCCCGATCCGCTGC TCCT GCCGCAGATCGAGA       ACCTGAAGATCCGCG  77 288
JRI60_RS28780 7262384 .. 7262401 - -11.3  -3.40403   GGGCGCGGAGGAGAA             CGTGCCA GGAC TGGCACG              CGCACGCCCCTTCCC  68 145
JRI60_RS28775 7261343 .. 7261369 - -19.4  -3.86346   TGAGCCGGTGACAAA         GGGAGGGGCTCG GAC CGGGCCCCTCCC         TCCTCATGTTGTGCG 100 391
JRI60_RS28720 7244725 .. 7244741 -  -2.2   -3.3785   TGAAGGGATTCAGAA              CGAGGA GCATT TCCTCC              AAATCGAAGTCTGAA  46 77
JRI60_RS28715 7244036 .. 7244048 - -10.5  -2.90615   ATCTCTCCGAAACGA                GGGGC TTC GCCCC                GAATCCGCCGCGCTC  59 343
JRI60_RS28710 NONE
JRI60_RS28700 7239957 .. 7240015 -  -6.8  -2.82623   TTCCCGCGACAAGGA GGTG--CACGGTCG-CGAGGGAGGAGTCC TACC AGACTCCTCCCCATTCCACCGTGAGCACC TCACCTCAACGCAGG  50 31
JRI60_RS28690 7234989 .. 7235027 -  -8.6  -3.28712   GTTCGGTCCCCAGAA   GCCCATGGTGGGTGCCCG TGT CAGGCGCGCTCCACGCGC   AGGCGCGCGGGCAGG  58 7
JRI60_RS28685 7234100 .. 7234134 - -10.7  -2.87132   CCTCCCCCTCACAGA    CCCTG-TCGCGGCGCC GAAA GTCGCCACGAGCAAGG     CAGGCAACAAGGGGG  61 106
JRI60_RS28680 7232492 .. 7232511 -  -8.6  -4.07687   AGTCGGGCTCGAAAA            GGTGC-ACC ACG GGTCGCACC            GCTGAAGACCCGGAC  72 50
JRI60_RS28670 7230033 .. 7230043 -  -8.2  -3.13522   AGGGGCTGACCAACA                 CCCC CGG GGGG                 GCTCACCCCTCCATC  56 28
JRI60_RS28665 NONE
        rsmD NONE
        coaD 7227817 .. 7227838 -  -5.7  -3.35679   TCGCGTCATCGAGAA           GCAGCGCGG CGCT CAGCCCTGC            TTCCCGTACTTCGCC  53 16
JRI60_RS28650 7226526 .. 7226559 - -11.7  -3.01712   CCTCCCTCGGGAAGA     CCCTCACCCCCTG CCCTCTCC CAGAGGGAGAGGG      AGCTCAGCGCAAGGC  65 29
        carB 7222149 .. 7222176 -  -5.4  -2.52676   CATGGCCCCAAGCTA        CCACCGCCCCTC GCAA GAGGGTCGACGC         CGAGTGCCCTCACGG  44 228
        dacB 7220575 .. 7220603 - -13.2  -3.27022   GTGAGGGTATAGGAA       GCCCCGGGTTGCC CACT GG-AACCCGGGAC        GCCCCTCGAGTCCCG  73 50
JRI60_RS28605 NONE
JRI60_RS28600 NONE
JRI60_RS28595 NONE
JRI60_RS28590 NONE
JRI60_RS28585 7172284 .. 7172296 -  -4.1  -4.07885   GATTTCTTCCCAAAA                TCACA CGC TGCGA                GCTTCGGTCGAGTCC  61 13
JRI60_RS28580 7170888 .. 7170915 -  -3.2  -3.55444   CCGGTACCCTTGAAA        GCCTTGCTCGCG CGGC CGCGAGCCTACC         GGTCACATGGTTACA  49 72
JRI60_RS28575 NONE
JRI60_RS28570 NONE
JRI60_RS28565 NONE
JRI60_RS28560 NONE
JRI60_RS28555 NONE
        fabD 7164452 .. 7164490 - -13.7  -2.78384   TGCTGGCTGACGACA   GGGTGGCTGTCGGGCCC GGGAG GGGCCCGGCAACCCTCC   CAGATTACGAGAGCG  69 30
         map 7163475 .. 7163494 -   -10  -2.57931   TTCAGCGGGTACAAG            CGGGTGAT GGTG ACCACCCG             GTAGTACGGCGCGCC  57 96
JRI60_RS28505 NONE
JRI60_RS28500 NONE
JRI60_RS28495 7150277 .. 7150299 -    -9  -3.40403   CGCGCTCTACGACAA           CCCCCACGAC TGG GACGTGGTGG           AGGCGGTGAAGAAGG  58 256
JRI60_RS28485 NONE
JRI60_RS28480 NONE
JRI60_RS28475 7114453 .. 7114471 -  -5.9  -2.81464   GCACCAGCCAGGACA             GCGCATC TTCGT GCTGCGC             AAGCCCCCCATGCCC  44 191
JRI60_RS28460 7109567 .. 7109586 -  -3.4  -3.72576   CGCTCGGTGATCAAA            CGGGCCGA CGGT TTGGGCCG             GTGGGACTTGTGGGT  53 108
JRI60_RS28455 NONE
JRI60_RS28450 7106834 .. 7106848 -  -7.8  -3.85698   CTGCTGCGGCATAAA               GAGCAG GTC CTGCCC               GCCCTCCCAAAGGAG  65 261
JRI60_RS28430 7102306 .. 7102325 -  -4.2  -2.78384   CGGGCGCGCATCAGA            GGACCTTC TGCG GAAGAACC             GGCGGCGCGGGCCGG  41 1
JRI60_RS28425 NONE
JRI60_RS28420 NONE
JRI60_RS28415 NONE
JRI60_RS28410 NONE
JRI60_RS28405 NONE
JRI60_RS28400 7097664 .. 7097698 -  -2.6  -2.70932   GCCCCGCGCCAATCA     CCACCGTGACGCTCAC CCC GTGCCTCCCACGGCGG     GCAGCTCCAACGCCG  38 3
JRI60_RS28395 7096274 .. 7096306 -  -3.4  -3.10056   ACCACGGAGGGAAGA      CCCTCACCCT GACCCTCTCCCAG AGGGAGAGGG      GACATACCACCGAGT  44 40
JRI60_RS28390 7095028 .. 7095041 -  -3.7  -3.59979   TGCGCCTACTCCAAA               CGGGC CAAG GCCCT                CCTGTCCGAGAAGGG  53 248
JRI60_RS28355 7088563 .. 7088595 -  -7.5  -3.05384   CGCGCGGTGACGGAA      GCGGGCGGACCCG TGGTCTG CGGGAGCTCCCGC      CGGGGTTGCGCATGG  52 125
JRI60_RS28200 7036810 .. 7036822 -  -3.3  -3.15663   ATTGACGTCCAGGAA                GGGCA TGG TGCGC                TCCGAGTCGAAGGGT  44 44
JRI60_RS28195 NONE
JRI60_RS28190 NONE
JRI60_RS28185 7033120 .. 7033135 -  -8.2  -3.15663   ACGCAGGCCGAGGAA              GAGCGG TTGG CCGCCC               ATGGGCCGACGCATC  56 480
JRI60_RS28170 7026972 .. 7027004 -  -2.6  -3.14602   CCCAGTGCAGGAAGA     CCCTCACCC-CAG CCCTCTCC CAGAGGGAGAGGG      GGCATACACGGTTTC  42 39
JRI60_RS28150 NONE
JRI60_RS28145 7022190 .. 7022219 -  -4.9  -3.28712   GCCTCGGCCTCAGAA       GCTCTCCTTGAAC CCAT GTTCGAGGAGGTC        ACTCTTCGGCAGGAT  49 24
JRI60_RS28140 7021092 .. 7021104 - -10.5  -3.28712   GTGGTGCCTGGACAA                CGGGC ACG GCCCG                AAGACGATGGCGGCG  64 185
JRI60_RS28130 7017434 .. 7017458 -  -9.9  -3.53444   GGACCCTTCGCGAAA          TCCCCTCTCCC TCT GGGAGAGGGTT          AGGGTGAGGGTCTCC  67 57
JRI60_RS28120 7015607 .. 7015629 - -15.6  -4.09628   GACGTGAAACAACAA           CCCCTCTCCC TCT GGGAGAGGGA           CGGGGTGAGGGTATG  93 77
JRI60_RS28115 7012405 .. 7012438 -  -5.1  -3.28924   CATCCTCTTCCACAA     GGGCCAGCGCGGC GGGAGCGA GCTGCCCTGGCAC      CAGGACGGGGGCAAG  51 416
JRI60_RS28100 7009940 .. 7009955 -  -5.4  -3.14931   GCGAGGGGGGACGAA              GTCCGCC GGA GG-GGAC              TTCACGACACGTGCG  49 27
         xth NONE
JRI60_RS28090 7007906 .. 7007922 -  -7.9  -3.65522   CATCCACGCGAAGAA              GGGGGAC CTC GTCGCCC              AGGGCAAGAACCTGG  61 416
JRI60_RS28080 7006017 .. 7006069 -    -9  -2.97188   CGAGACGACCACATA GATTCCGGTCGGTGAGGGTCCGG-GC TAA GCTCCGGACCCGTACCG-CCGAGCCC ACCCCGAAGGCAGGG  57 517
JRI60_RS28060 7002992 .. 7003015 -  -4.5   -3.7941   GACGCCGGACAACAA          CCCGGTGCTG GGCCG CA-CGCCGGG          CCTGGAGAACCTGCT  58 196
JRI60_RS28045 6999512 .. 6999563 - -14.3  -2.84098   GCGGTGAACGAAGGA CCCTCCGGGGGCGGCTGGGAGCGT GGGGG ACGCTCTG-GCCGCCCCCGAGGTG TTTTCACCGGCCAGC  71 29
JRI60_RS28020 6994191 .. 6994222 -  -2.8  -2.84634   CGGGACACTACCAGA      GGCAATCGGGCACCG GAA CGGCGAC-GCATGCC      CGCCTGGGGGGCGAC  41 42
JRI60_RS28015 NONE
JRI60_RS28010 6990389 .. 6990404 -  -3.2  -3.53012   CGTGCCCGGGCCAAA              GGTGCGG ACG CCAC-CC              GGCTCCGGCAAGGGC  49 104
JRI60_RS28005 6988925 .. 6988948 -  -6.7  -3.07994   GCGAAGGCGATGCAA          GACCGCATC TTCATG GACGCGATC           CGCCGGTTGGCGTCC  49 493
JRI60_RS27995 6987113 .. 6987171 -  -6.5  -3.31461   GATGCACTTCGAGAA GGAGGTGGTGGAGCTGCGCGAGCTGATGG AGG CCGCCGCCGCGCGCATCGCCACC-C-TCC ACCCGGGCAACCCGG  53 492
JRI60_RS27975 NONE
JRI60_RS27970 NONE
JRI60_RS27965 6979444 .. 6979468 -  -7.2  -2.96274   TCCTCGAGAACCAGA         TCC-GCGTCGAG CTG CTCG-CGCAGGA         GGCCCGCAAGCAGGG  50 421
JRI60_RS27955 NONE
JRI60_RS27950 NONE
JRI60_RS27945 6950258 .. 6950272 - -11.4  -3.30453   GAGAATGGAGATCAA               CCGCTC CGC GAGCGG               TGGCTTGTCGTAGCT  68 121
JRI60_RS27935 6949223 .. 6949236 -  -4.5  -2.50074   GTCCCTACAACATAG               CCCGA ACTC TCAGG                GAGTGGAGATCAACC  42 21
JRI60_RS27930 6947934 .. 6947944 -  -4.6  -3.35996   CATCTGGAGCCACAA                 GGAG CTG CCCC                 CCGCGCTGGATGAGC  49 493
JRI60_RS27880 NONE
JRI60_RS27875 NONE
JRI60_RS27870 6931851 .. 6931883 - -20.8  -2.61264   CGCTCCACGTAGAAC      GGCCTTGCTTCAGA GAGCG TCTGAAGCAAGGCC      CACATCCTCACGAGG 100 41
        mutS 6917326 .. 6917338 -  -3.3  -3.20573   CGACCCAGAGCAAGA                CGCCT GCC AGGAG                TGCTCCCCTCTGAAA  44 116
JRI60_RS27820 NONE
JRI60_RS27815 6915009 .. 6915065 -  -4.2  -3.47227   CGCGAAGCAGGAGAA GCC-TCTCCAGGGCGTGTTCCTCACGC ACCT GCACATGGACCACGTCGCGGGGATGGC GGACGTCCCGGCGGG  51 487
JRI60_RS27805 6913303 .. 6913317 -  -2.1  -3.33696   GGCGGTGGGAACCAA              CGAGCG TTTC CGCT-G               CTACCGCTACCAACC  45 313
JRI60_RS27790 6911436 .. 6911468 - -16.9  -3.15544   GGGCACCTTCACGAA      CCAGACCGCCGCCGC CGC GCGGTGGCGCTCCGG      AGACCTCGCCACGGC  80 507
JRI60_RS27780 6909472 .. 6909502 - -13.2  -3.06492   CCAGCGATGGGAAGA       CGCCCCGGGGCC GAGCGGG AGCCCCGGGGCC       TGGGGCCAGGACTAC  70 37
JRI60_RS27775 NONE
JRI60_RS27770 6907848 .. 6907864 -  -3.6  -3.39895   CTGGGCACGAAGGAA              GCCTTC GGTGT GATGGC              CCTGGAGTACTTCGT  47 61
JRI60_RS27760 6905235 .. 6905253 -  -6.7  -2.52464   CGCGTCCTCAACTGA             GGCTCAG TTCAC CTGAACC             TTGGCGACCTGACGG  47 10
JRI60_RS27750 NONE
JRI60_RS27745 NONE
        tnpB NONE
JRI60_RS27735 6896872 .. 6896883 -  -3.6  -3.65224   ACCGCAGTGCAACAA                GCAC CGCG GCGC                 CCGGTTAGCTCGAGA  54 67
JRI60_RS27730 6896351 .. 6896387 - -20.2  -3.09492   CGGCGAAGGGTAACA   GCTC-GCCGCGCCCCGT CTAG ACGGGGCGCGGATGAGC    CCGCCGAGCATCGAA 100 57
JRI60_RS27725 6894865 .. 6894889 -  -2.8  -3.35371   TACACCTGGAAGGAA          GCCGATCG AGCGCTCAA CGATCTGC          AGGCGGGGCGCCGCA  45 484
JRI60_RS27690 NONE
        tnpB NONE
JRI60_RS27680 6878522 .. 6878533 -  -3.6  -3.65224   ACCGCAGTGCAACAA                GCAC CGCG GCGC                 CCGGTCAGCTCGAGA  54 67
JRI60_RS27675 6876992 .. 6877016 -  -6.3  -3.14132   CGCTGCGTGCAGGAA          GGTAGCTGGAC GGA GCCCGGCTACT          CACTCTGCGTCCACG  51 114
JRI60_RS27670 NONE
JRI60_RS27665 6874198 .. 6874229 -  -6.5  -3.97368   TCGCGAACCGACAAA      GGCCCTGCGCCCCA ACACG TCAGGCGC-GAGCC      TTCCTCTAGAGAAGC  64 62
JRI60_RS27660 6873216 .. 6873234 -  -4.5  -3.41602   GCCAGTGGAGGACAA             GGGAACG CTCAT CGTTCTC             ACGCCCGACCTGCTC  49 180
JRI60_RS27640 NONE
        glnD 6865747 .. 6865772 -  -3.1  -3.14463   AACGCGGCTGATGAA         GCGCATGGCGG GCAG CCGCTATCCGG          TCATCACCCGGGTGG  45 460
JRI60_RS27620 NONE
JRI60_RS27615 6864226 .. 6864242 -  -4.3  -3.20573   CGATGGAGAGGAAGA              CGAACAG CGC CTGCACG              GGTTGGGTGCTTACA  47 58
JRI60_RS27610 NONE
JRI60_RS27605 NONE
JRI60_RS27600 6861072 .. 6861105 - -13.1  -3.02461   CAATCTTCCGGAAGA     CCCTCACCCCCCG CCCTCTCC CAGGGGGAGAGGG      AGCATGCGAAACCTC  70 39
        xerD 6859918 .. 6859936 -  -2.4  -2.82623   TCTTGCGGAGAAGCA            GCA-GGC GCCGGG GCCGTGC             CCATCAGGGCGGCGA  40 158
JRI60_RS27590 NONE
JRI60_RS27585 6857752 .. 6857772 -  -5.4  -2.57211   ATCGCCGTGGACAAC            GCGGTG CACCTCTAC CACCGC            TACCGCGAGGAGGGG  43 356
JRI60_RS27575 6854721 .. 6854734 -  -3.7  -3.73042   CGGCGCACGAAAACA               GACCC CTAC GGGAC                ACCCGTGTATGTCCC  56 60
        trpS NONE
JRI60_RS27560 NONE
        scpB 6850491 .. 6850501 -  -6.8  -2.71731   CCCACCCGTCAAGCA                 GGCT CTG AGCC                 CTTTTCGCCCTCCTC  48 8
JRI60_RS27550 6848313 .. 6848323 -  -6.8  -3.64703   CTCCGGGGAGGGAAA                 GCGT GAG ACGC                 GGGCGGTTATATCAG  61 64
JRI60_RS27545 NONE
JRI60_RS27540 6844409 .. 6844425 - -12.3  -3.21924   GCAGGCTTCAGAACA              GCACGAG CTC CTCGTGC              GGCTCCAGCGTCTCC  71 1
JRI60_RS27535 NONE
        rtcA 6840717 .. 6840755 -  -3.7  -3.34192   AAGTCCTCGAAGTAA   CGCATGCACTCCTCCGA ATGTG TCGGATCCAAGCATGCG   CGCCCTCGAATGGCA  47 56
JRI60_RS27520 6840264 .. 6840292 -    -3  -2.78596   GATGCGCGGACGATA       CCCCATCCTCACG TCGC CGAG-GGACGGCG        GCGGAACAGCGCGAT  40 5
JRI60_RS27515 NONE
JRI60_RS27510 6837627 .. 6837679 -  -5.4  -3.35679   GGGTGTGAGCCACAA CCTGCCCGA-CAACCGGCTGCAGGAG TTC CTCCGGCA-CTGCGCGCTCGGGCGGG TGGGCACGGTGCAGG  51 339
        fabZ NONE
JRI60_RS27490 NONE
JRI60_RS27485 NONE
JRI60_RS27480 NONE
JRI60_RS27475 6829846 .. 6829884 - -10.8  -2.80816   GGTCGAGTCATGACA   CCGCCTCCTCCCTCTCCC TCT GGGAGAGGGTCGGGGTGA   GGGTCAGTCGCAACT  61 161
JRI60_RS27470 NONE
JRI60_RS27465 NONE
JRI60_RS27460 6828002 .. 6828028 -  -2.2   -3.0497   ACAGGACGGCCAACA         GGACGAGGATGA GTG TCATGCTCACGC         GGTGCGTCCCTGACG  41 20
JRI60_RS27455 6826758 .. 6826786 -  -4.4  -3.51825   GCACTGGAAGGACAA        CCGGCTGGACTA CTTCC TCGACCACCCGG        GCGAGGTCGCCGCCT  52 183
JRI60_RS27400 NONE
JRI60_RS27395 6812133 .. 6812169 - -17.4  -4.21319   ATGAACCGTAATAAA   CAGCAACGCCAGGGAGG TCCT CCTCCCTGGCGTC-CCG    TTTCACATCGATTGG 100 52
JRI60_RS27390 NONE
JRI60_RS27385 NONE
JRI60_RS27380 NONE
JRI60_RS27375 NONE
JRI60_RS27370 NONE
JRI60_RS27365 NONE
JRI60_RS27360 6796710 .. 6796725 -  -2.4  -3.59024   GGAGAAACAGGACAA              TGAGCC AGAG GGCCCC               GGCCGGCGCCCAGGG  48 493
JRI60_RS27355 NONE
JRI60_RS27350 6794246 .. 6794271 - -14.1  -3.05816   CCATTTGCGATCTAA         GCCATGTGAAC CTTA GTCCACATGGC          TTAGACACCCGGCGG  72 310
JRI60_RS27345 6793221 .. 6793232 -  -2.2   -3.2794   CTTCAGGGACACGAA                GCAG GGGT CTAC                 TCGGCCGCGTTCAGC  44 401
JRI60_RS27325 6786422 .. 6786437 -  -2.5   -3.4285   GGAGTCAAGGGAGAA              CCCTC GGGGTG GAGAG               CAAGCAGGGGCCCGG  46 53
JRI60_RS27320 NONE
JRI60_RS27315 6785175 .. 6785188 -  -5.2  -3.61398   CGGCGCCTCCAAGAA               GGCG CTCGCC CGCC                GTGGCACCTGGGTCA  57 323
JRI60_RS27290 6777903 .. 6777940 -  -4.8  -2.66106   TACCCCAACAACCCA   TGAGGAGCGTGTCA GGAGGGCTGG CGACGCGCTCCTCG    CCTCGCCACCGCCCC  41 143
JRI60_RS27275 NONE
JRI60_RS27270 NONE
JRI60_RS27265 6773038 .. 6773084 -  -5.9  -2.73364   GCCCGACGTGAACCA GCACTTCTGGCTCCTCCCCAC CACGTGC GAAGGGAGGAGCCAGG-GT-C AGACCGCCCGAGGGC  47 41
JRI60_RS27260 6772114 .. 6772128 -  -7.1  -2.64973   AGGAAGGCCAGACGA               TGCCC CTGCC GGGCA               AGGAGCTCTTCTTCC  45 149
JRI60_RS27245 6768994 .. 6769006 -  -3.3  -3.21099   GTCGTGGAGTATCAA                CGACC CCA GGTGG                CCTACGTCGAGGAGA  45 50
JRI60_RS27235 NONE
JRI60_RS27225 NONE
JRI60_RS27220 6763653 .. 6763665 -  -5.5  -3.50853   CTTCTTCAAGCAGAA                GACGA AGT CCGTC                CAGGCCATGAGCCGC  53 410
JRI60_RS27210 NONE
JRI60_RS27205 NONE
JRI60_RS27200 6757278 .. 6757288 -  -6.8  -3.61398   CGTGGGCCCGAAGAA                 GGAG CGC CTCC                 CACTCGAGCTCCCAC  59 404
JRI60_RS27185 6752986 .. 6753025 - -20.8  -3.51232   GCGGCGCGAAATGAA  GAGGCCGGAAGCCGCTGA TCGC TCAACGGTTTCCGGCCCC   GGTCCAACTCAACTG 100 51
JRI60_RS27180 6751910 .. 6751926 -  -8.7  -3.65046   CTTCGATCCCAAGAA              GCCGGAT GCC ATCCAGC              TGGTCATCGTCTACA  64 194
JRI60_RS27135 NONE
JRI60_RS27130 6741810 .. 6741824 -  -2.7  -3.32521   AGGAGACCTGCACAA               CGGGG GCCTG CCCCT               CACCAGCCTGCGTCT  46 446
JRI60_RS27120 6738416 .. 6738455 -  -9.3  -3.28637   CAGGAACACCACCAA  GGAGATGGCCGAGGCCAA CGTGT TCGGCGTC-GCCAGCTCC  CGCGTGGATGAGGGC  61 60
        sppA NONE
JRI60_RS27105 NONE
JRI60_RS27100 NONE
JRI60_RS27095 NONE
JRI60_RS27090 NONE
JRI60_RS27085 6732965 .. 6732997 -    -4   -2.7806   GGTAAATCGGTAAAC      GAGGAACCGGGC GGCGCTATA GCCCTGGCCCTC      CTACCGGTCAACGAC  41 33
JRI60_RS27080 6731974 .. 6731994 -  -5.3  -3.01712   CTCGGGGTGGGAAGA            CGGTGACGG ATA CCCTCACCC            CCGCCCTCTCCCGGT  47 111
JRI60_RS27075 6731104 .. 6731132 -  -5.9  -3.02263   ACACCGGTTGCAAGA        GGGGCCGGCAA GTGCTGG TTGCCGCGCCC        ATTAGCCAGCACGCG  49 66
JRI60_RS27070 NONE
JRI60_RS27065 NONE
JRI60_RS27060 6727899 .. 6727924 - -11.1  -2.78384   CGGTTGTTGACGACA         GCCACTCGCGG GGAG CTACGAGTGGC          GCGCGATCCAGTCCC  60 315
JRI60_RS27055 6726073 .. 6726110 - -19.9  -4.60487   GAGTACTTCGAAAAA   CAGACGGCCGGATTCCC TCTC GGGAACCCGGCCGCCTT    GTGTCTCTCTCGTGA 100 56
JRI60_RS27050 6723098 .. 6723110 -  -4.8  -3.60214   ACTGGAACGAGAGAA                GAGC TTCTC GCTC                CGAGGATCAGCCGGA  52 42
JRI60_RS27045 6721712 .. 6721745 - -15.3  -3.40403   CCCCTCCTACGAGAA     CGGGGCGAGGGCC TTCTGGTC GACCCTCACCCCG      CCCCTCTCCCAGGGG  82 70
JRI60_RS27040 NONE
JRI60_RS27035 6720313 .. 6720330 -  -8.4  -3.21099   GGCGGGTACGACGAA             GAGCCG GCGGAG CGGCTC              AGATGCTCATCTCAC  56 24
JRI60_RS27030 6718889 .. 6718929 -  -5.2  -2.63891   ATCTCCAAAACAGAC  TCCTGTGTGCCGCCGGCG GCTTA CGCGGGCAGCTCGAAAGA  CATCACGGACTCCAC  44 5
        queD 6718099 .. 6718128 -  -3.3  -3.14132   CGCCTGGGCGAGGAA       GCCCTGTCGGTCC TGGA GGACGGTGGGGGC        ATGGTGTTCATCTCC  45 416
JRI60_RS27005 NONE
JRI60_RS27000 6714109 .. 6714148 -  -4.9  -3.65046   GGCGGATTGCAACAA CCCCGC-GGGCGGCCAGGC GGGC GCCTCAC-GCCCGGCTGAG  GACCTTCTGCATCCG  55 11
        miaB NONE
JRI60_RS26990 6712029 .. 6712068 -  -3.4  -3.01712   GGTGTGGTCCTAACA  CGCACGCCCCCGGCCGTCA CGT TAACGGCTGGCGCGGTG-G  TCCGCCGCCGTCCGC  42 7
JRI60_RS26985 6711393 .. 6711418 -  -7.5  -4.07568   CGCGCCTCGTCAAAA         CTCCGGGCC-CG AGC CGCGACCCGCAG         TATCCCCTATGGCTG  69 163
JRI60_RS26980 6710042 .. 6710052 -  -6.8  -3.29511   GCGAGCCGTGGAGAA                 CGAG TAC CTCG                 GCACGCTGAAGATCT  53 512
        guaB 6706281 .. 6706307 -  -8.7  -2.86271   CCTGGACGACAAGGA        GCAGCTGCTCTC CCGT GTGAGCAGC-GC         GGAGAAGCGCGTCGT  53 125
        guaA 6704057 .. 6704091 - -17.2  -5.06103   AGAACCCCGAAAAAA     CGAAGGGGCTGCCC GGTTCAT GGGCAGCCCCTTTG     TGCTTCTGGTGTTCG 100 56
JRI60_RS26950 6701018 .. 6701047 -    -2  -3.54424   CCCGACGGGGCCAAA       GGTGCG-TTCGGC GGCTA GCCATGGCGCACC       TCGGCAAGGCGCTCC  48 10
JRI60_RS26945 6700451 .. 6700476 -  -5.3  -2.87931   GGGACCTGGGAGACA         CTCGCGAGC-GG CCC CCAGCTCGCGCC         GGAGTTCCCCGAGGA  46 265
JRI60_RS26940 NONE
JRI60_RS26935 NONE
JRI60_RS26930 NONE
JRI60_RS26925 NONE
JRI60_RS26920 6697249 .. 6697284 -  -7.4  -3.38812   CCCTCCGGAAGAAGA    GGCGCG-CGCGCAGTAG ATG CCACGCCGCGGCGCGCG    ACACACTGCGCGTCA  59 38
JRI60_RS26910 NONE
JRI60_RS26905 NONE
JRI60_RS26900 NONE
JRI60_RS26895 NONE
JRI60_RS26890 NONE
JRI60_RS26885 NONE
JRI60_RS26880 NONE
JRI60_RS26875 NONE
JRI60_RS26870 NONE
JRI60_RS26865 6689967 .. 6690004 - -16.4  -3.32844   GGCCGGACGCGACAA  GGGCGGGAG--GAGCTGC TCGA GCAGCTCAACCCCCGCCC   CTGGCTACTACTGCC  82 47
JRI60_RS26860 6687831 .. 6687871 -  -5.9  -3.15861   GAGGACGTGGAGCAA  TCGGCGCGGGAAGCCGG CCCGGCT CCGGCCACGCTGGCCGA  GGTGCGTTGCGAGGA  49 443
JRI60_RS26790 6674242 .. 6674280 - -16.1  -3.36749   GAGCTTGAACAGCAA  GGGGACCGGTGCGC-CC TCCCTCC GGCGCGC-CCGGTCCCC  GGGTGGAGCCTCATG  85 104
JRI60_RS26780 6671720 .. 6671738 -    -3  -3.35679   GCCCGCCATCGACAA             GCCGGC GGTGGAA GCCGTC             TATCACTACCGGGTG  47 431
JRI60_RS26770 6670619 .. 6670652 -  -9.6  -3.31144   CGCCGAGGTGCAGAA     GGCCGTGGATGCCCT GGTGA AGGGCATCC-CGATC     GGCTCCTACTCGGTG  61 245
JRI60_RS26755 6664739 .. 6664759 - -15.5  -3.14132   CGCGCTTCGGACGAA            CTGGTCCGA CTG TCGGACCAG            TTGCTCCCGAGCGCG  78 80
JRI60_RS26740 NONE
JRI60_RS26735 6650229 .. 6650246 -  -3.3  -3.14132   TCCCCTCCGCATCAA             CGGCGGCC CAC GGCCTC-G             AAGTGGTTCAGGAGC  44 4
JRI60_RS26730 NONE
JRI60_RS26725 NONE
JRI60_RS26720 6646482 .. 6646502 -  -9.8  -3.00525   GTCGCTGAAATCACA            GGGTTTTC GAGAG GAAAACCC            AGCGCAATCCTCTAT  60 205
JRI60_RS26715 NONE
JRI60_RS26710 NONE
JRI60_RS26705 NONE
JRI60_RS26700 6642695 .. 6642749 -   -10  -3.53012   CTGGCCGGTGGGAAA GATGCCGGTCCTGGTGGACCGCGCCG CGAAC CGG-ACGATCC-CCGAGTCCAGCATC ATCATCGAATACCTG  64 473
JRI60_RS26685 6640463 .. 6640504 -  -7.1  -2.72344   GTTCACCCGGAAGCA CGGACTCGCCAGGAGCGTGG ACT CGCCGCTCCTG-CTCGCCCG GTACGGCTACGTGCA  48 489
JRI60_RS26670 6636328 .. 6636340 -  -3.4  -3.76482   GGAGATCACCAACAA                GAAC GTCAG GTTC                GTCAAGGACATGCCG  56 235
JRI60_RS26660 6633810 .. 6633832 -  -5.4  -3.16191   GCAGATCCTCATCAA           CCTGCTGAGC AAC GCCCGGCACG           CGCTGGTGGACAGCA  49 376
JRI60_RS26650 NONE
JRI60_RS26645 6630654 .. 6630665 -  -3.6  -3.67775   ACCGTGAGCGAAGAA                GAGC AAGA GCCC                 GAGTGAAGTTTGTCG  54 68
JRI60_RS26640 NONE
JRI60_RS26635 6627091 .. 6627134 -  -2.2  -3.07962   GTGCATAGGGCAACA GCTCTTGTTGCGC-CCACGCC CCG GGTGCGGCGAGCAGCACCAGC AGCCAGCAGGCACCA  42 107
JRI60_RS26630 6626102 .. 6626138 - -11.4  -3.53224   TACCTGCGCGCGAAA    CGGCTCGTGGCGGCGA GCGCA CCGGCGCCGCGAGCGG    GCTCGAGCGCGGGGA  69 70
JRI60_RS26610 6620950 .. 6620975 - -11.9  -2.71364   CGACGTGCTGAAGGA         GAGGCTCGC CTTCTGCC GCGAGCCTC          TCCCGGAAGCGACGG  60 91
JRI60_RS26590 6616889 .. 6616904 -  -2.4  -4.03413   ATCTCCGGATAGAAA              GACTGC TTCG GCGGCC               TCGCCCAGAACGAAC  58 111
JRI60_RS26585 NONE
JRI60_RS26580 6613742 .. 6613754 -  -6.2  -3.30441   GAGCATCGTGGAGAA                CGCG CCGAT CGCG                GTGGCCACGGCCAAG  53 210
JRI60_RS26570 NONE
JRI60_RS26565 6609342 .. 6609370 - -19.6  -4.08557   TCCTGGAAAGAAGAA        CCGTGGGCGCAC GGTGA GCGCGCCCACGG        TGTGGCTGACTAGTT 100 35
JRI60_RS26560 6607797 .. 6607807 -  -8.2  -3.40403   CGTCGTGGACGACAA                 CCGC GAC GCGG                 CCGAGCTGCTCACCG  60 326
JRI60_RS26540 6602962 .. 6603010 -  -3.1  -3.16564   GCTGGAGGTGAGGAA CACGAGCGCGCA-GCCCTGGACG GTGGA CACGGAGGGCGTG-GCGCTGGTG GGTAGGGGAGGCGTA  45 224
JRI60_RS26525 6598493 .. 6598539 -  -5.9  -2.62184   GCGGCGCGCAGAGTA GGCGCCTGGCGTCCAAT-GCG AACGCGG CGCAATTGGACATCTGGC-CC ATTCGTTCGGTAACA  46 105
JRI60_RS26520 6597118 .. 6597134 -  -4.3   -3.4052   TCTTAAGGGAATGAA              GCGGGAA GGA CTCGCGC              TCAGCGGCCGTAGTA  51 26
JRI60_RS26515 NONE
JRI60_RS26510 NONE
        ugpC NONE
JRI60_RS26500 6592348 .. 6592368 - -10.3  -2.57931   CGCACGCCGCACAAC            GACGCCTCG GCC CGGGGCGCC            TTCGTGGGACTGGCG  56 431
JRI60_RS26470 NONE
JRI60_RS26460 6581458 .. 6581486 - -10.2  -2.91274   CCGACGGCAAGTACA       CCCCCGAGGACGC GTCC ACGGCC-CGGGGG        CTCAACGTCTCCTAT  56 378
JRI60_RS26430 6571680 .. 6571690 -  -8.2  -3.79906   CGAGCGCGAGAAGAA                 GGCG AGC CGCC                 GGGCGCAGACCTGAG  68 88
JRI60_RS26390 NONE
JRI60_RS26385 6559478 .. 6559502 - -12.1  -2.73364   GGTCGAGGGGAACGA          GGCCACCGTGG GCA CCACGGTGAAC          GTGAACCGGGACAAG  60 257
JRI60_RS26370 6556293 .. 6556320 - -11.2  -4.86621   ATCGGCAATGAAAAA        GCGGCCGATCCC GAGG GAAAACGGCCGC         CGAAACCCCGTTCAC 100 61
JRI60_RS26365 6554707 .. 6554747 - -22.2  -3.31144   CGGTTAGCTCCACAA TGAAGAAGGCCCGTCAGGT TCAC ACCTGACGGGCCTT-TTCA  TTTTCGAAGGAAAGC 100 173
JRI60_RS26330 6550734 .. 6550755 - -11.5  -2.78816   CGATGTCTCATCACA           CCGACCCGC TCTG GCGGGTTGG            CGTGGCCGACCCGAG  62 192
JRI60_RS26325 NONE
JRI60_RS26320 6547540 .. 6547557 -  -2.5  -3.37796   GCCCATCACCGACAA             CCGCGTG CGGG CCCGGGG              CTGTGATTCGGGCTC  45 284
JRI60_RS26305 6544209 .. 6544219 -  -2.4  -3.23853   CGCTTCGAAGCAATA                 CCAG AGC CAGG                 ATGGAGATGGAGCAG  44 70
JRI60_RS26300 6543328 .. 6543341 -  -2.3  -2.70354   TGCCTGAGAAACTCA               TCGCG GAAT CGCCA                CCTTCGGGATGCTGA  38 9
JRI60_RS26295 NONE
JRI60_RS26290 6539318 .. 6539332 -  -5.6  -3.01712   CCGGGGCGGGGAAGA               GCACCC TGG GAGCGC               TCTGGGCGGGGGCCG  47 404
JRI60_RS26200 NONE
JRI60_RS26195 NONE
JRI60_RS26190 NONE
JRI60_RS26185 6520223 .. 6520255 -  -3.4  -3.34398   GCGGGTGGGGAAATA      CCCTCACCCT AGCCCTCTCCCAG AGGGAGAGGG      GACATCCCACGGGTC  46 61
JRI60_RS26175 6518141 .. 6518176 -  -6.7  -2.64616   GGGCGAGGTAGACGA    GTCCGGTGCGTCCGC GGCCCA GGGGACGCAACAGCC     GGTACTCGTCGAACT  47 101
JRI60_RS26170 6513974 .. 6513986 -  -4.7  -3.29144   GGAGGGTTGCGACAA                CCGCC CCA GTCGG                GAGCAATTGCGGTTG  49 509
JRI60_RS26155 6512514 .. 6512526 -  -7.7  -3.53811   TCTACGTCCGTGAAA                TCCAG AAG CTGGA                CGACTATCGCGAGTT  58 305
JRI60_RS26130 6507030 .. 6507045 -  -6.1  -3.21099   CTTCTTCACCACCAA              GCCCA TCGGGG TGGGC               ACCGGGCTGGGCCTC  51 185
JRI60_RS26120 6501707 .. 6501727 - -12.5  -2.76696   CGTTCCCGGAAGAAG            CGCGGCGCT CGC ATCGCCGCG            TGAGGGACCTCCCGG  65 128
JRI60_RS26110 6498238 .. 6498258 -    -9  -2.55544   CCACCAGGGAACTCA           GGCCGTGCT TGAC AGC-CGGCC            GGGCTCCTCAGGTGG  54 33
JRI60_RS26105 6497354 .. 6497386 -  -3.4  -3.01712   TGTTCCGGGGGAAGA      CCCTCACCCT AGCCCTCTCCCAG AGGGAGAGGG      GACATCCACGGACCC  42 92
JRI60_RS26080 6490568 .. 6490612 - -19.3  -5.44119   CGGAGTGTAAAAAAA CAGACCTCGGGACCCGAGA CGGAAAT TCTCGGGGCCCGAGGCCGG AGCATTCCAGGGAGA 100 160
JRI60_RS26045 NONE
JRI60_RS26040 6483332 .. 6483344 -  -4.8  -3.76224   CTTGGAGGGAGGAAA                TGGC ACGCG GCCA                GTCTCCCTCTCCTCC  58 66
JRI60_RS26035 NONE
JRI60_RS26030 NONE
JRI60_RS26025 6481353 .. 6481375 -    -9  -2.72991   GCAGACGTCCAACGA           CCTCGCCGTC GAG GCCGCCGAGG           TGCTCAAGCTGCCCT  51 408
JRI60_RS26010 6480069 .. 6480081 -  -4.7  -4.20868   CGGGGAAAACAAGAA                GCGCC CCT GGCGA                TGAACGCGGCGCAGG  66 94
JRI60_RS26005 NONE
        treS NONE
JRI60_RS25995 NONE
        glgB 6472319 .. 6472357 -   -11  -3.01791   ACTGCTGGCTCAAGA  GTGCCTGGAGGCTCTCG GAATCG CG-GAGCCTCCAGGCGG   GTGGGCGGCCTTCGA  62 49
JRI60_RS25960 NONE
JRI60_RS25955 6457578 .. 6457602 -  -5.6  -3.12351   GCCTTCCAGACCGAA         GACGGTCCCGC CATG GCGCG-CCGCC          TCGCCGAGCGCATGA  47 254
JRI60_RS25945 6455319 .. 6455339 -  -2.5  -2.81207   CAGGTAACACAGAAG            GGCGG AGGATTGGAAG CCGCC            TTACCGGGTAGGTCA  40 72
JRI60_RS25940 6454311 .. 6454323 -  -6.9  -2.78596   GAGCCTGGTACCAGA                CCCCC TCA AGGGG                CTTCGTTGACGGAGC  48 480
JRI60_RS25930 6452316 .. 6452326 -  -3.2  -2.57132   GGTGCCTGCCAGAAG                 TACC AGT GGCA                 GAACGATGGATGGCG  39 56
JRI60_RS25925 NONE
JRI60_RS25920 NONE
JRI60_RS25915 NONE
JRI60_RS25910 NONE
JRI60_RS25905 NONE
JRI60_RS25900 6445280 .. 6445317 -  -9.7  -3.17051   GCTTCATCACCAACA   GGCCCTGGTACTACATC ACCC GAGGTAGGCCCTGGGCC    CCCCTCGCCCCCGGC  59 387
JRI60_RS25880 6437485 .. 6437495 -  -2.4  -3.28712   CGCCGCCTTCCAGAA                 GGCG GTG CGCG                 GCGGCCGGCTCCAGG  45 91
JRI60_RS25870 6435303 .. 6435315 -  -4.7  -2.80816   TGCGGACGCATGAGA                CCTCC TGG GGTGG                GACTTCGACGGTCCC  44 116
JRI60_RS25865 6434461 .. 6434485 -  -4.8  -3.30124   CGCCAGCGGTGACAA          CGCGGCGAGC GGCGA GGGCACCGCG          CAGGGCTTCGACGAC  49 428
JRI60_RS25845 NONE
JRI60_RS25840 6428518 .. 6428528 -  -8.2  -3.01712   CCGGCCTGCCGAACA                 GCGC ACA GCGC                 CAGCGCCAGGTGGAG  54 334
JRI60_RS25830 6427348 .. 6427366 -  -5.2  -3.33261   GCCGAACCTCGAGAA             GCTCGACC TGC GGTGGAAC             AAGTTGTCGTCCCTT  51 161
JRI60_RS25820 6422379 .. 6422399 - -15.5  -3.14132   CGCGTGCCGGACGAA            CTGGTCCGA TGG TCGGACCAG            TTGTTCCCGAGTGCG  78 347
JRI60_RS25795 6416332 .. 6416342 -  -6.8  -3.73647   GCGAGGGATGAAGAA                 GGAG CTG CTCC                 TCGGGGAGCGCTGGA  62 238
JRI60_RS25785 NONE
        allB NONE
         alc NONE
        uraD NONE
        uraH NONE
JRI60_RS25760 6409104 .. 6409145 -  -2.6  -3.06796   GTGGAGGCCATCCAA CGGCTGGCGGGGCGGGGG GTGCTG CTCTCGCCCGGCATCCCG  CGGCGCGCGCCCATC  41 256
JRI60_RS25730 NONE
JRI60_RS25725 6402746 .. 6402782 -  -9.9  -3.31144   GCTCGATTGCTACAA    CCCGCCGCCCGGCACGA CGC CCGAGCCGGGAATCGAG    CTGGCCTTCCAGCAG  61 399
JRI60_RS25715 NONE
JRI60_RS25710 6398591 .. 6398619 - -20.3  -3.14132   CCTGGGCGCGACGAA        CGCCCGCGGGG AGGAGTG CCCCGCGGGCG        CCGTGCTCACTTCGT 100 32
JRI60_RS25665 6386326 .. 6386360 -  -8.3  -3.28712   CCGCGCCCCGGAGAA     GGCCCGTGCACGCCC CGTCC GCGCGAGCGAGGGCC     GGGAGCGCCGTGGCG  58 457
JRI60_RS25655 NONE
JRI60_RS25650 NONE
JRI60_RS25635 6380378 .. 6380389 -  -4.4  -2.65774   CAGATGGATGAGAAT                TCCA GCCT TGGA                 GCTTCCGGACCGGGC  42 42
JRI60_RS25630 6377849 .. 6377876 -   -22   -4.4078   CGCGTTGAATGAAAA        GGGGCCCGGGCC GTGT GGCCCGGACCCC         CATGACTTCAGAGCG 100 53
JRI60_RS25605 NONE
JRI60_RS25600 NONE
JRI60_RS25595 NONE
JRI60_RS25590 NONE
JRI60_RS25585 6365636 .. 6365664 -    -8  -2.53995   ATCCATTCTAACGGA        GCGGCCCTGGCT TTTTC AGCCGGGGCTAC        CCATCGAGGGGCGCG  50 52
JRI60_RS25580 6364454 .. 6364475 -  -9.4  -3.05844   TCCCGGACGGCAAGA           CCCTGGCC TCCACT GGCCAGGA            CGGCAGCATCCGGCT  57 172
JRI60_RS25570 6359256 .. 6359269 -  -3.7  -2.92613   CTTCATGGCAAACGA               CCTCC AGGC GGGGG                ACAGCGGTCAAAGGG  43 56
JRI60_RS25565 6358316 .. 6358340 -  -6.4  -3.53811   GCCACCGGGTCGAAA         TGAGC-GTCGG GCGC CCGGCGGCTCA          GCGCTGGCAGTAGGA  56 23
JRI60_RS25550 6353078 .. 6353103 -  -5.3  -3.28712   CGCGCTCCTGGAGAA         CCCGGCCG-AGC TGC GCCGCGTCCAGG         AGTCGCCCGAGCTGT  51 508
JRI60_RS25540 6350714 .. 6350741 - -12.7  -2.57132   GCCCTGCTTGATAAT        GCACC-GCCGCC TCGCT GGCGGCCGGCGC        CAGCTCCGGCACGCA  64 55
JRI60_RS25535 NONE
JRI60_RS25530 6347939 .. 6347959 -  -3.3  -3.30243   ATCTATGCTTGACAA           TG-GGGTG CGGCCT CACCCGCA            CGACGCGCAGCGTGT  46 305
JRI60_RS25520 NONE
JRI60_RS25515 6346227 .. 6346237 -  -3.2  -3.14132   CGTCGGGTGGAGCAA                 CGTC AAC AACG                 TGATCGCGTACCGGA  45 205
JRI60_RS25505 NONE
JRI60_RS25500 NONE
JRI60_RS25495 NONE
JRI60_RS25475 NONE
JRI60_RS25470 6336822 .. 6336834 -  -6.9  -2.52464   CTCGTCGTGAAGTCA                CCCGC TGG ACGGG                TACTTCCCGACATCA  45 222
JRI60_RS25455 6328850 .. 6328873 -    -3   -3.7941   GATCCGCGAGAAGAA          CATCG-GTCGC CGC GCGGCGCGCTG          AGCCACTCGAGCAGG  56 99
JRI60_RS25445 6326022 .. 6326032 -  -2.4  -3.28712   CCTTGCCCGCCATAA                 CGCG ATC CGCT                 TCGCCGGCCGGCCCG  45 409
JRI60_RS25435 6324430 .. 6324442 -  -2.6  -3.14132   GGCCGCGCTGACGAA                CACG ATCTA CGCG                GTGCAGAGAACCCAT  44 153
JRI60_RS25425 6322708 .. 6322730 -  -7.6  -2.79796   GCGGATTCCAGTACA           CGCCGCGG TACAGGG CTGCGGCG           TCTGTGTGCGCGTCA  51 38
JRI60_RS25385 6313396 .. 6313416 -  -6.7  -2.62184   GCGCCGGGGAGAGTA            GGGGAGGCA CGG TGGCGCCCC            TGGGTTCGGGACCAA  47 125
JRI60_RS25365 6309510 .. 6309530 - -11.9  -3.14132   CGCGCTCTTGACCAA            CTGGTCCGA CAG TCAGACCAG            TTGGTGAACTTCGGC  66 44
JRI60_RS25360 NONE
JRI60_RS25355 6307013 .. 6307046 -  -6.1  -3.07962   GGTGAGACCTGAACA     TTCCTGCCTCC TGAAAATGTGGG AGAGGCAGGAA      TTACCTGACACATAA  51 63
JRI60_RS25350 6305324 .. 6305337 -  -3.7  -3.28712   CCGGGGCGCGGAGAA               CGCAC GGCC GGGCG                AGTCCGGGATGATCC  47 403
JRI60_RS25310 6295357 .. 6295374 -    -7  -3.29649   AGGCTACGACAGCAA             GTGCTC GAGGGG GAGCAC              TCAGTGTGTCCGCTG  54 26
        valS 6292556 .. 6292568 -  -5.5  -3.18264   GGTGGGAGGTATGAA                GACGA CCG CCGTC                CAATGGGTCTACGCT  49 58
JRI60_RS25300 NONE
JRI60_RS25295 NONE
JRI60_RS25255 NONE
JRI60_RS25250 NONE
JRI60_RS25245 6281103 .. 6281115 -  -3.3  -3.14564   TTAGGTGTGCATGAA                GGCGT GCA ACCCC                GGGTGTAGGTTTTTG  44 503
JRI60_RS25230 6278464 .. 6278477 -  -4.5   -3.4072   GACCCCGGAGCAGAA               GC-CGG CTC CCGAGC               AGAAGGAGAACCCGG  49 502
JRI60_RS25195 6269833 .. 6269853 - -14.1  -3.14132   CGCGTTCTGGACGAA            CTGGTCTGA CAG TCAGACCAG            TTGCTCCCAAGCGCG  73 76
JRI60_RS25190 6267779 .. 6267797 -    -3  -2.78384   CCGCGCCGGAGCAGA             CTGGCGTG CGG CACTCCAT             GTCCAGAGTTTGGTG  40 358
        istA NONE
        istB 6264916 .. 6264928 -  -4.7  -2.87211   AGCCGGGGGGAGATA                CCGGG CAT CCAGG                TCGCTCGCGCCTCAA  44 198
JRI60_RS25175 NONE
JRI60_RS25170 6262424 .. 6262455 -  -4.2  -3.53012   GCTGCGCCTCTTAAA      CCCCGGCGCCGAGCC CTG GACACTG-GCGGGGG      CGGCGTTGGTGGACT  51 396
JRI60_RS25155 NONE
JRI60_RS25150 6257126 .. 6257138 -  -3.3  -3.03159   CCAACGCGGGCAACA                TCACC TCC GGGGA                GTCGCGGCTGGAGGT  43 282
JRI60_RS25140 NONE
JRI60_RS25135 NONE
JRI60_RS25130 6251544 .. 6251555 -  -5.8  -2.62263   ACGGCTTCGACAGCA                TCCC GCGC GGGA                 TGTACTGGGCCATCG  43 284
JRI60_RS25120 6250170 .. 6250181 -  -5.8  -4.74801   TAATTGGAGGAAAAA                CAGC TTTT GCTG                 TTTTCGCCAATAACA  81 150
JRI60_RS25115 6248555 .. 6248574 -    -7   -3.7282   CGAGCTCACGAAGAA            CGCCGCCG AGAT CGGCTACG             CGCGCTTCCTCTACG  62 82
JRI60_RS25105 NONE
JRI60_RS25100 NONE
JRI60_RS25095 6244001 .. 6244057 - -11.1  -2.71681   GAAGTGCGCGAATCA TCATGC-GCCATGTCTATGGACCAGGGC CGAC GCCC-GGTAGACAGAC-TGGCGGCATGA CACCAGCGTGGGGCC  60 128
JRI60_RS25010 6228654 .. 6228687 -  -7.4  -2.52516   GTGTGGATGACGAAC     GCAACGGGTGCGCCG GTGAG CGCCG-AGCCGTTGC     TGAGGGCCACGGAAG  48 137
JRI60_RS24980 NONE
JRI60_RS24975 NONE
JRI60_RS24970 6218128 .. 6218141 -  -5.2  -3.17075   GCGGCGGGAATCGAA               CCCG CCGCCT CGGG                TCGTCACTCGAGACT  49 40
JRI60_RS24960 6215264 .. 6215276 -  -2.6  -2.79183   GTGATGCTGATGACA                CCGC AGAGG GCGA                CGAGGAGTTTCGCCG  39 192
JRI60_RS24950 6213168 .. 6213217 -  -9.8  -2.92921   ACACAACCTGACACA GGCGAGGCACAGCCCCCTCTGG TGGGCG CCAGAGGGGGCCAACACCCGCG TATCCTGACAGGAGG  59 124
JRI60_RS24930 6206349 .. 6206368 -  -9.2  -2.79796   CGTCACCGGAGTAGA            GAGCGGGC CGCA GCCCGATC             CCTGTGAGTCCTGTT  51 218
JRI60_RS24915 6195699 .. 6195757 -  -6.6  -2.57344   GAGCGCTTCGAGAAC GTCACCGCGCAGGCCCTGGACGACATCGC CGAG GCGGTG--GCCCAGGGGC-GCGCGCCGGC GCCGCTCCCCAACTT  45 204
JRI60_RS24895 6189553 .. 6189598 -   -25  -3.01712   CCCTCGGTCGTAACA GGAC-GAGGGGCACGCGCGTCA CGGA TGACGCG-GTGCCCCTCTGTCC GTTCCCGAGTTCCTA 100 38
JRI60_RS24890 NONE
JRI60_RS24885 NONE
JRI60_RS24880 NONE
JRI60_RS24875 NONE
JRI60_RS24870 NONE
JRI60_RS24865 NONE
JRI60_RS24860 6175252 .. 6175267 - -10.4  -3.83026   TGGGTCCACACGAAA              GGGCTG GGAG CAGCCC               CAGGACGGCCAGCGA  74 179
JRI60_RS24855 6168980 .. 6169016 - -15.2  -2.70932   CCTGCCCGTGAACGA   GGGCGACAACCCGTTCG GCCT CGA-CGGGTTGCCGCCA    CAGTAGGCTCAAGGC  72 34
JRI60_RS24840 6164030 .. 6164042 -  -6.2  -3.41222   GGCGAACGTGAAAGA                CGGG GGAGG CCCG                TGGGCATGGCTTGTC  55 73
JRI60_RS24835 6162415 .. 6162425 -  -2.4  -3.73224   GTAGCGTGTATGAAA                 TGCC CGA GGCC                 ATGCCCCCCGGCCGG  51 81
JRI60_RS24830 6161287 .. 6161306 -  -2.8  -3.29511   GCCAGTGCTGGAGAA            CGCG-CTGA AGC TCATCCGCG            GCGAGCTGCACCACC  45 466
JRI60_RS24800 6154842 .. 6154854 -  -4.7  -3.41878   CCGGTCAAGCGAGAA                GCGCC AAG GGGGC                GAGGACAATCAGCCC  51 2
JRI60_RS24795 6153860 .. 6153887 -  -8.2  -3.30124   GCGCAGTCGCTACAA        CGGGCGGCCTCG GCGC CGCTGCCGCCGG         ACGTGGGGCGGCAAC  58 201
JRI60_RS24775 6143850 .. 6143895 -  -2.6  -3.78934   GGGCTGGCACAACAA CCACCA-TGCCTTCCCGAGCTCG GCG CG-GCT-GGGCATCCAATGGTGG GAGCTCGATCTGGGG  55 151
JRI60_RS24765 6142255 .. 6142281 - -19.5  -3.14463   AACTCTGTGGATGAA         GCCCCGCTGAC GCTGA GTCAGCGGGGC         TTCGTCGTTTCCGGG 100 66
JRI60_RS24735 NONE
JRI60_RS24730 NONE
JRI60_RS24725 6134652 .. 6134666 -  -3.5  -3.05384   TGCGCCGGGACCGAA              CCGACG GTTT CG-CGG               CGATATTTCGCCTAC  44 46
JRI60_RS24720 6133512 .. 6133527 -  -4.6  -4.15222   AGGGGTGTCAAGAAA              CGGATG GCTT CAGCCG               CCGGCTACCGTGGTG  62 19
JRI60_RS24715 6131892 .. 6131924 -  -3.4  -4.12599   AAGAAGCGCTGAAAA      CCCTCACCCT AGCCCTCTCCCAG AGGGAGAGGG      GACATGCACGGTGAG  59 216
JRI60_RS24660 6122492 .. 6122507 -  -2.4  -3.21747   CGAGGTCACCACGAA              TCCCCG TTAC CGGAGC               AACGTCCAGGCGTTC  44 138
JRI60_RS24645 6091498 .. 6091555 -  -5.4  -2.71364   CCAGCTCGGCAAGCA GCCT-GTCCTGGCGCTGGACGGACGGT GCGTG AGCTGCCGTCCAGCGCCATTCCCAGAC AACGGTTTCGAGTCA  45 38
JRI60_RS24640 NONE
JRI60_RS24635 NONE
JRI60_RS24630 NONE
JRI60_RS24625 NONE
JRI60_RS24620 6070194 .. 6070206 -  -2.6  -3.75332   ATGGGTGAACGGAAA                CGGC GGCGG ACCG                TACCATGACCCTCAC  51 94
JRI60_RS24615 6069478 .. 6069501 -  -2.3  -3.41878   CCCTCCAAGGGACAA          TCTGGGGGG GATCGG CCCGCGAGA           CACGGGCCAGGGGGC  46 99
JRI60_RS24610 6068833 .. 6068862 -  -4.8  -3.61398   CCTCGCCTTCAAGAA       GTCGCAGCAGGG CAAGCC CCCGGCGCCGAC        CCTCGACGGCTTCAC  55 297
JRI60_RS24600 6065398 .. 6065419 -  -4.3  -3.25942   AGTTCGCCAGACGAA           GGGTGGG GCGAGGAG CCCTCCC            GTCAATCCGCCAGCC  49 88
JRI60_RS24595 6064443 .. 6064462 -  -3.5  -3.28791   ACCGCCCGTGCACAA            GGCTCGA TCGCCT TCGAGCT             CAAGGCGGGTGAAGC  47 75
JRI60_RS24585 6059813 .. 6059829 -  -7.9  -3.09834   GAGGCGAGGAGCCAA              CTCCACC ACT GGTGGTG              CAGCGCATGCTGGGG  54 105
JRI60_RS24580 6059043 .. 6059069 - -11.7  -3.23216   CGCGAGCAGGATTAA         GTCAGTCGACT GAGCA AGTCAACTGAC         TTAATCTCGCGCCTG  68 126
JRI60_RS24575 NONE
JRI60_RS24570 NONE
JRI60_RS24565 NONE
JRI60_RS24560 NONE
JRI60_RS24555 6053094 .. 6053128 -  -5.1  -3.80733   CCCATGTGAGAAGAA     TTAAGTCGAGTGACT GAAAA AGTCAACTGACTTAA     ATCGAGGCCTGATGA  60 65
JRI60_RS24550 NONE
JRI60_RS24545 NONE
JRI60_RS24540 NONE
JRI60_RS24535 NONE
JRI60_RS24530 6047732 .. 6047745 -  -2.3  -3.62597   CTGAGCCCCGAAGAA               TACGG TCTG CCGAA                GCTGCCCGCGCTCGG  51 160
JRI60_RS24520 6046417 .. 6046438 -  -2.3  -3.44146   GGCGGGCAGAACGAA           GCTGTATTGC ATG GCAAT-CATC           GTGAATCCTCTTGAA  46 21
JRI60_RS24515 6045327 .. 6045349 -  -8.4  -2.90075   GGGCCTCCAACTACA           CGTACGCG GAGGCCA CGCGCACG           CAGCGAGGGCCGGAC  53 487
JRI60_RS24505 6043969 .. 6043979 -  -8.2  -2.70932   CGCCCCCCTTAAGGA                 GCGC TGA GCGC                 ATGGCGAACCGGCTC  51 442
JRI60_RS24485 6041376 .. 6041388 -  -4.8  -3.54029   GCTCATCAAGGACAA                GGGA AGCGA TCCC                ACCACCCAGCGCAAG  51 163
JRI60_RS24425 6027696 .. 6027708 -  -7.7  -3.98378   CATACCGAACAAGAA                GCTCA TCG TGAGC                CGGTGCGACGGGCCG  67 190
JRI60_RS24405 6024603 .. 6024620 -  -2.6  -3.05384   GGCCCGGGGAGGGAA             GGGGAC ATCGAG GTCCGC              GGTCCGACGGTGATG  41 470
        aroF NONE
        ubiE NONE
JRI60_RS24360 NONE
JRI60_RS24355 NONE
        aroC NONE
JRI60_RS24345 NONE
JRI60_RS24340 6010686 .. 6010704 -  -3.1  -3.01791   ACGCCCGTTTCAAGA            CG-TGAGG CGGA CCCCAGCG             CGCTCCAACTGCCGC  42 1
JRI60_RS24335 6009195 .. 6009250 - -11.1  -3.53012   GGGCCCGCCCTGAAA CGGCGAGAGGGCCGCGGGTTCCAGGTC CGTA GACCCTCA-CCC-CGGCCCTCTCCCAG AGGGAGAGGGTGCTC  70 70
JRI60_RS24325 6006896 .. 6006911 - -10.4  -2.68823   GCGGGGGTAGACAAG              CGAGCG TCAG CGCTCG               TCCTCGTCCTCGTCG  57 16
JRI60_RS24320 6006033 .. 6006044 -  -7.2  -2.53263   GGGACCGTCAATCCA                GGCC AGGG GGCC                 GGTTACAGGCTGATC  47 28
JRI60_RS24315 NONE
JRI60_RS24310 6002385 .. 6002413 - -14.5  -3.86346   CTACGTTGCGAGAAA        GCCCGGCTCCC TGGGAGG GGGGGCCGGGC        TTTCGCCTGTCCGGG  87 49
         pyk 6000833 .. 6000845 -  -4.8  -3.53012   CGTTGGCCCCTCAAA                TCCG GTGCA CGGA                CATCATGTTGGTGCG  52 8
JRI60_RS24300 NONE
JRI60_RS24295 NONE
JRI60_RS24285 5995937 .. 5995950 -  -3.7  -2.83403   GTCCCTGGACGAAAT               GCGCG ACCT CGAGC                TGGGGCCAGGTGACG  40 444
JRI60_RS24260 5991946 .. 5991967 -  -5.1  -3.53444   GTACTTTCCGCCAAA           CACCGTGGGC TGG GCCGACG-TG           GGGCTGGTCAAGGCC  53 202
JRI60_RS24250 5989490 .. 5989534 -  -7.1  -2.70932   CTCCTGGGCTAAGGA GGAGGGAGGGTCCCGGCAGCC CAGCC GTCT-CCGGGGCCCTCA-TCC GCCGAGGGCCCATCG  48 514
JRI60_RS24230 5987248 .. 5987274 -  -7.2  -3.01712   TGTCGGCGGGGAAGA        GTGGG-CCGCG GGAGTT CGCGGACCCGC         CCAGCGTGCCGCTCG  52 274
JRI60_RS24220 5981470 .. 5981498 - -18.8  -3.87815   TCGGATCTCCAGAAA        CCCCGCCTCCGG TAGGT CCGGGGGCGGGG        CATGACGGGCAGGGG 100 60
JRI60_RS24215 5979930 .. 5979944 -   -10  -2.63631   GCAACCCTGAGAGGA               GAGAGG ACC CCTCTC               AGTAGCAGTCCAGGC  57 48
JRI60_RS24205 5977924 .. 5977939 -  -4.6  -3.31144   GCGCGAGCTGGAGAA              TGCGCT GGAG AGCGCG               GTGGCCATGAGCCCG  49 310
JRI60_RS24190 5973517 .. 5973527 -  -2.4  -4.67234   ACTGAACCCGAAAAA                 CGGC AAC GCGG                 TCGAACACCTGAAAG  74 232
JRI60_RS24180 NONE
JRI60_RS24175 NONE
JRI60_RS24170 NONE
JRI60_RS24165 NONE
JRI60_RS24160 5965803 .. 5965819 -  -3.5   -3.9777   GTGAACATCGACAAA              TGGGTGC CCA GCTCCCT              GAGCCTGACCCGCCT  59 414
JRI60_RS24150 5962190 .. 5962218 -  -4.5  -2.59564   CCGGCATCGCAGAAG       TGGAGCGCCGAG CAAATC CCCGGTGC-CCA        GCTGCGCACCTTCAC  41 193
JRI60_RS24135 5957380 .. 5957402 -  -2.7  -3.10012   AATCCCATGATTCAA          GT-CCTCACG CCTT CGTGATGTAC           GAGTAGATCCACATG  44 7
JRI60_RS24130 NONE
JRI60_RS24125 5955840 .. 5955856 -  -7.9  -3.36327   GCAGGCCAGGGAGAA              GGTGGGG ATG CCCAACC              CGGCCCTGACGCGGG  55 344
JRI60_RS24115 NONE
JRI60_RS24110 5949799 .. 5949812 -  -3.1  -3.61398   GCCCTGGTTGAACAA               GA-CCG AGG CGGCTC               AAGTGGGTGCCATCC  53 508
JRI60_RS24090 NONE
         bfr 5942330 .. 5942340 -  -4.6  -3.63627   GCGCGACATCGGAAA                 CGCG GAC CACG                 AGAGCGCGCTGCGCC  55 150
JRI60_RS24075 NONE
JRI60_RS24070 5940084 .. 5940094 -  -6.8  -2.67515   GGTACGAGGAGACGA                 CACC CGT GGTG                 GCCGCGCAGACGGTG  45 135
JRI60_RS24060 NONE
JRI60_RS24055 5934565 .. 5934587 -  -9.1  -3.29325   CTCCGACAAGGAACA           GGACCCGCA GACTA TGCGAGCCC           GGTGGGGGAGGGGAA  61 134
JRI60_RS24050 NONE
JRI60_RS24045 5930268 .. 5930286 - -10.3  -3.29511   GGCATCCGGCGAGAA             CCCTCGA GAGCG TCGAGGG             CGGTTTTCATAGGAC  63 128
JRI60_RS23970 5915629 .. 5915660 -  -6.4  -3.33261   GGCCAACTCGGACAA      CGTGCTGCGGGGCG GGTG CACGCCCAAGCACG       TGGACGTCCCGGAGT  53 361
JRI60_RS23930 5904607 .. 5904642 -    -6  -3.07935   ACGGTAGGTAGGCAA    CGACTCGCACCGAGAGG GAG CCCCCCGGC-CGGGTCT    TTCTGTTGGAACGCG  49 217
JRI60_RS23920 5902326 .. 5902376 -  -3.9   -4.2828   GGTTACCCATGAAAA CGTGCTA-TAC-ACCCGGTGCTGGC CGT GGCGGCTCCGGGTAGTACTAGCGTG GCTTCAGCGGCCCCC  65 29
JRI60_RS23915 NONE
JRI60_RS23910 5900298 .. 5900311 -  -8.1  -3.63276   CTACAAGAAGGAGAA               CCAGG AGAC CCTGG                ACGTGCTCGATGGGA  61 323
JRI60_RS23900 5898425 .. 5898470 -  -7.5  -3.22298   TCCAGTGATCACCAA CCAGCCGGGCCGGAATG GGAACGGGCCAT CACCCAGGCACGGCTGG AGTAGGCCCATGGCT  56 96
JRI60_RS23880 5892069 .. 5892127 - -13.7  -3.66178   GCGGGCAAGCCCAAA GCCGCGCAGCCCCTTGGGGTAGACGCCT GCCC AGGCCGCCCTCCCATGAGG-TGCGCGGC AGGGGCCTGGCTCTC  80 82
JRI60_RS23875 5891578 .. 5891596 -  -2.3  -3.63991   GATCATCTTGAAGAA             GCAGTCG GGCGA CAACAGC             GCCTACCTGAAGGAC  51 257
JRI60_RS23830 NONE
JRI60_RS23825 5844929 .. 5844954 -  -4.7  -2.99319   AAGCGGTTACAGATA         CGTACC-GTTCC GTA GAAACTGGTGCG         GGTTACAGGGGAATG  45 28
JRI60_RS23810 5839682 .. 5839712 -  -7.4  -3.30441   CACCACCGGCTACAA       CGCGACCCAGGACG GTC CGCGCTGGGTGGGG       GATGACGGCCAGGGC  55 470
JRI60_RS23780 5814495 .. 5814516 -  -8.7  -3.21099   CTTCTTCACCACCAA           GCCCGTG GGCGAGGG CACGGGC            CTGGGGTTGTCCATC  56 205
JRI60_RS23770 NONE
JRI60_RS23755 NONE
JRI60_RS23750 5805842 .. 5805855 -  -5.9  -2.62184   TCCCGCGCTACAGCA               GCAGC GGCG GCCGC                CCCAGGTGCAGCAAT  46 4
JRI60_RS23745 NONE
JRI60_RS23740 5803970 .. 5804007 - -16.4  -2.87132   CTTGTGCTCGAGATA   CCCTCACCCTTTCCCTC TCCCG GAGGGAGAGGG-GAGGG   GGGTCACGGATGGGT  79 29
JRI60_RS23725 NONE
JRI60_RS23720 5798200 .. 5798246 - -19.4  -2.98823   GTGCGCCCACACAGA CGAGAGGCCGTGAGTTCGGGGA CAA TCCCAGGGCTCACGGCCTTTCG CTTTTCCGGGCCCCA 100 518
JRI60_RS23675 5790845 .. 5790859 -  -2.1  -3.63991   CATGACGTCCAACAA              CG-CAC ATTG GTGACG               CCTGCCTCCTGGGTG  51 82
JRI60_RS23670 5789009 .. 5789019 -  -4.6  -3.86346   CGAGCGCGCTACAAA                 CAGC GGC GCCG                 GGCCCGGAAGAAGGC  58 300
        hutH 5775700 .. 5775717 -  -3.3  -4.28361   GCAATCTGAGGAAAA             CCGGTGCG AGA CGC-CCGT             TCGAACGAGCAATCC  63 237
JRI60_RS23615 5774068 .. 5774123 -  -8.5  -3.21269   CGGATCAAAGACACA CATCATCGGCGGGATGGACGTGATGATC TTT GATCG-CATGTC-A-CCCGCGGATGATG GAATGGAAGGGCTCG  56 49
JRI60_RS23610 5772376 .. 5772418 - -16.9  -2.53382   ACCACCGCGAATCCA GGCATGGACGCGGCCGAGCG AAGG CGCG-GGCCGCGTCCGGGCC GGTTCACCACCAGGC  79 29
JRI60_RS23605 5770366 .. 5770383 -  -7.7  -3.09516   CTGTCCACCATCGAA             GGCCA-GG GGA CCGTGGCC             CTCGAGTGGGAGGAG  54 502
JRI60_RS23585 NONE
JRI60_RS23580 5765192 .. 5765220 -  -2.1  -3.15544   GTTGATCCGCATCAA        CGTGCGCGAGCCC CAG GTTCCCGCGGGCG        GCATCAGCCTCCCCC  44 116
JRI60_RS23555 NONE
        ptsP 5757660 .. 5757677 -  -4.7  -3.28712   CCGTTTTCTCGAGAA             CGGCCCC TCAC AGGCCCG              GCCAGGTGCTCGTCA  49 15
JRI60_RS23545 5755826 .. 5755844 -  -3.8  -3.65812   GGTTGTTGAAGACAA             CACCAG TCCATTC CTGGCG             GGGATGGGTTTCCCC  54 82
JRI60_RS23540 NONE
JRI60_RS23535 5751540 .. 5751580 - -11.8  -4.59773   TGGGAGCCCCAAAAA  GTAACGCGCGTGTGAGCC GCAAG GACTCACACGCGCGTGGT  TGCTACACACCTCTT 100 45
JRI60_RS23530 5749398 .. 5749436 - -11.7  -3.05844   TCGGCCACGGCAATA  CCGGCACCGGCAAGGACG CATG CGTCCCCACCGGT-CAGG   TGCTGCGACTACCGT  65 91
JRI60_RS23525 5748650 .. 5748671 -  -3.7  -3.50326   ACGAAACCACCAGAA           GGCGTGAAA GGCC TTTCACAGC            ATCACTGCGTCTTGT  51 19
JRI60_RS23480 5736458 .. 5736472 -  -2.1  -3.13522   AGCGGTGTAGCAAGA              CGAGCC CGGG GGCT-G               TGTGAAACTTTGGAG  42 109
        ppk1 5734182 .. 5734202 -  -3.1  -3.65812   GGGGGCTCAATACAA            TCGACTCTC GGA GAGCGCCGT            CCACGTGGATGTTTG  53 83
JRI60_RS23470 5733165 .. 5733181 -  -5.1  -2.80935   AGGTGAGCCATGACA              TACCCCC TTG AAGGGTA              GAGGAAGCGGTGAGG  46 54
JRI60_RS23465 NONE
JRI60_RS23460 NONE
JRI60_RS23455 5729670 .. 5729702 -    -7  -3.84406   CCTGCACGAGAAGAA     CGT-GCTGCTCCAGC AGCG GCTCGAGGAGCTACG      CGCCCAGCACAAGGC  62 366
JRI60_RS23445 NONE
JRI60_RS23440 5726656 .. 5726681 -  -7.5  -3.05844   GCCGGCAGGCGAAGA         TCCAGGGCTGG CACG CCAATCCCGGA          GATACCCACTGCGCT  52 237
JRI60_RS23430 5724571 .. 5724602 -  -2.1  -3.84271   CTACAAGATCAAGAA      TGGC-TCGGCGGGC TTCAC GCGCGCGGTCGCCA      TCTTCAGCGGACAGG  54 49
JRI60_RS23420 5722228 .. 5722242 -  -4.2  -3.06796   CTCCATCCCAGGGAA               GTCCTC TTC GAGGAG               ACCTACTGCTGCGTC  45 454
JRI60_RS23410 NONE
JRI60_RS23405 NONE
JRI60_RS23400 NONE
JRI60_RS23395 NONE
JRI60_RS23390 NONE
JRI60_RS23385 5715387 .. 5715411 -  -2.7  -3.70109   CACACGAGGCAAGAA          CCTGCCTTC TTTCTGG GTAGGCCGG          TCACGCGCCATCTTC  53 194
JRI60_RS23380 NONE
JRI60_RS23375 5711562 .. 5711585 -  -7.6  -2.62184   TGGCGGCGGACATGA          CGATATTC-GA ATA TCTGAATATCG          TGATGCCGTAAAGCC  50 115
JRI60_RS23370 NONE
JRI60_RS23365 NONE
JRI60_RS23360 5710334 .. 5710354 - -14.1  -3.14211   ATCGCTCGGGAGCAA            CTGGTCTGA CTG TCAGACCAG            TTCGTCCGGAACGCG  73 228
JRI60_RS23350 5706995 .. 5707014 -  -2.8  -3.35679   CGGCTTCAGCGACAA            CTT-GGCGG AGG CCGCTGAAG            ACATCGACGCCTGGC  45 101
JRI60_RS23340 NONE
JRI60_RS23335 5702862 .. 5702886 -  -3.6  -4.25104   TCTGGGTCATGAAAA         CCTTCGACGCA CTGT TGAGTC-AAGG          ATGAATCAGAAAAAC  65 250
JRI60_RS23330 NONE
JRI60_RS23325 NONE
JRI60_RS23320 NONE
JRI60_RS23315 NONE
JRI60_RS23310 5689670 .. 5689699 -  -4.1  -3.22476   ACGAGCCACCATGAA       GCAGGAGGTGTGC CAAC GCTCACTTCCCTC        TCGAGTCCCTCTTGT  47 131
JRI60_RS23305 5688303 .. 5688328 -  -4.6  -3.51825   TCATTCGAATCACAA         CCCGAGATGG CAAGAC CCAGCCCGAG          GCAGGCCACCCAGGG  52 265
JRI60_RS23300 5686727 .. 5686739 -  -4.7  -3.30124   CGGCACCCTGGAGAA                GTCGC TGC GCGCC                GTGCGGGTTGGAGGC  49 310
JRI60_RS23290 NONE
JRI60_RS23285 5679547 .. 5679572 -  -7.6  -3.05816   GCAGTTCTGATTCAA         GAGGGGAACC CAATCC AATTCCCCTC          CCAACCCCCCTCCCT  53 121
JRI60_RS23275 NONE
JRI60_RS23270 5674640 .. 5674672 -    -4  -2.87132   CGTCGCGCGGAGAGA     CCCCGCGCACCTGAGG CGT CCCC-GG-GCCCCGGG     CCGGTTCAGGGAATC  43 31
JRI60_RS23225 5666356 .. 5666372 -  -7.2  -3.47349   CCGTGAAAGGGATAA              CACGCC GTGGA GGCGCG              GGAGTCCGTGGAGGG  56 48
JRI60_RS23220 5665068 .. 5665091 -  -8.9  -2.87132   GCTCCGTTCCAGAGA          TCGACAGTG AACGTG CACCGTCGA           GATTCTCACGTCCCG  54 70
JRI60_RS23215 5662094 .. 5662108 -  -2.1  -4.60797   CGGCCACACACAAAA               TCAAG GGTGT CCTGA               ATTCCGGTTGGATTC  70 102
JRI60_RS23210 NONE
JRI60_RS23205 5655568 .. 5655595 - -19.2  -5.63517   GTTGCAAATAAAAAA        CGGTGGCCCCAC TGAA ATGGGGCCACCG         TTCGTCCGGCGAACC 100 54
JRI60_RS23200 5655115 .. 5655145 - -13.3  -3.14463   AAGGCGCTCGAGGAA      CGCTGG-GAGGGCC GGTT GGCCCTCGCCAGGG       TGGGGTAGGCCGGAG  72 44
JRI60_RS23185 5650789 .. 5650808 -    -7   -3.7941   GACGCCGGAGAAGAA            GCCCCCGG CCGA CCAGGTGC             TCTCCTACCGGGAGT  62 385
JRI60_RS23145 NONE
JRI60_RS23140 5639005 .. 5639015 -  -8.2  -3.53224   GAGGGCCCGTTCAAA                 GCGG GAT CCGC                 TCGAGTCCGCGGGCG  62 428
JRI60_RS23135 5638299 .. 5638311 -  -3.3  -4.36914   TGGGGCTCGAGAAAA                CGGAC TGG ACCCG                TCATCTGCTGGGACC  69 239
JRI60_RS23115 5632932 .. 5632952 - -15.5  -3.35813   CGCGAGTTCAAGCAA            CTGGTCCGA TGA TCGGACCAG            TTCGAGCTGAGTGCC  82 78
JRI60_RS23105 NONE
JRI60_RS23100 NONE
JRI60_RS23095 5628179 .. 5628193 -  -3.4  -3.05384   TCGCGTCTCAGGGAA               CGGGCC GGT AGCCCT               GGGTGACCGCGGTGT  42 3
JRI60_RS23090 NONE
JRI60_RS23085 5626325 .. 5626336 -  -4.4  -2.62657   AGAATAGATAGTAAT                GAAG GTTA CTTC                 CGCGGCTCCCACTCC  42 19
JRI60_RS23080 5624122 .. 5624132 -  -2.4  -3.91084   GGAGCCGCAAGGAAA                 GCTC GCC GGGC                 AGGGAGGCCGCGAGG  56 73
JRI60_RS23065 5619661 .. 5619697 - -12.1  -3.14132   GCTCCGGCGCAGTAA    CCCCTCCTCCCTCTCCC TCT GGGAGAGGGTCGGGGTG    AGGGTCGTCCCCTCC  69 95
         pip 5616123 .. 5616152 -  -6.3  -3.30441   GATGACCTTCCAGAA       GGCCCTGGAGG ACGAGAAG CCTCCCGTGCC        CACGCTCTTCGGCGC  53 471
JRI60_RS23035 NONE
JRI60_RS23030 5611201 .. 5611215 -  -4.2   -3.9122   CAGGCTGCGAAACAA               GGCAAT GCG AGTGCC               CTCTTCAGTCTGGGG  61 397
        tnpB 5599276 .. 5599286 -  -2.4  -3.15999   TTCTCACACAGGTAA                 CTCC AGA GGTG                 GGGGCTGCCAGCGTG  42 3
JRI60_RS23000 5597124 .. 5597135 -    -3  -3.78775   CCCGGGATTATGAAA                CAAA TCCG TTTG                 GTTGTGGTTAGAGAA  56 441
JRI60_RS22965 NONE
JRI60_RS22960 5583081 .. 5583097 -  -7.9  -3.45737   CAACTACTACGACAA              CTGCCTC GAC GAGGCGG              TGCGCCGAGGGTGGC  58 194
JRI60_RS22950 NONE
JRI60_RS22945 5579582 .. 5579598 -  -9.3  -4.02817   GTGGGAGAAGAAGAA              CGGCCGG GTG CCGGCGG              GGGCGTTCGCCGCGC  74 382
JRI60_RS22910 5569415 .. 5569461 -  -7.9  -3.29144   CGACTGGCCGCACAA CGTGCGCGAGC-TGGGCCTGCTC GCC GAGC-GGCTCTCGCTGGTGCACG CCGGCTCGCAGCTCC  55 277
JRI60_RS22890 5565226 .. 5565242 -  -2.1  -2.74144   GTCGCACGGGGAAAC              GGTCTCC TCA GGAGGCG              CTGCGGGCGCGGGAA  38 16
JRI60_RS22885 5563803 .. 5563820 -  -3.3  -2.59564   CCCCCAGTGTAGAAG             GCCCG-GG CTC CCGCTGGC             TACTGGCCGGGAGTC  39 25
JRI60_RS22880 5563046 .. 5563070 - -15.7  -3.06915   AGGTAGTGCACGGAA          GCGTCCTTCCC CCT GGGAAGGGCGC          TTTCGCGCTTTCTGG  77 103
JRI60_RS22695 5539386 .. 5539415 -  -2.9  -3.72893   GAGCCGCCGAGGAAA       TCGAAG-ATGCCCA TGA TGGAGATGCTCCGA       GGGGTGCTGCGAGTT  53 111
JRI60_RS22690 5538628 .. 5538652 - -12.7  -2.72947   GATGGAGGACACAAT          GGGGTGGGCGG GGG CCGCCCGACCC          GTCAGGTGCCAGACA  65 47
JRI60_RS22685 5536713 .. 5536731 -  -3.7  -3.22521   CGGATACTAAGCGAA             GCCCGGC GATAA ACCGCGC             ACCTTCTGTCAACGC  47 60
        argS NONE
JRI60_RS22675 5532166 .. 5532185 -  -6.4  -3.16564   TCTGCACTGGACCAA            CGCGCC-CT ACG AGTGGCACG            TCAACGAGGGCGAGG  51 226
JRI60_RS22665 NONE
JRI60_RS22660 5529906 .. 5529922 -  -4.4  -2.94144   GGCGTAGTCAAACGA             GCTGTGC GCGG GCAC-GC              TCCGCCTCCTCGATG  44 1
JRI60_RS22655 5529406 .. 5529460 -  -7.7  -3.82084   CCGGAAGATCAAGAA GGACGGTCAACGCGTGGAGGTCGAGG GCGA CGTGGCCCGCGACGTGTTGACCG-CC GCCATGGTGGGCCCC  65 75
JRI60_RS22620 5524455 .. 5524473 -    -3  -3.01712   CGGCGTTCGCGAAGA             GCCAGC GGGCGGT GCAGGC             GGCGATCGACGGATA  43 396
        dctA 5518519 .. 5518543 -  -7.8  -3.40403   GCGCGCGCAGGACAA          GCGGCACATC ATCGA GATGCGCGGC          AACGTGGGCCGGCTG  55 408
        corA NONE
JRI60_RS22585 NONE
JRI60_RS22580 5514472 .. 5514517 - -11.7  -3.31792   GGACGAGCTGGAGAA GGCCGCCCGAGAGCCCCTGCCC GAT GAACCGGAGCCC-CAGGAGGCC CCCGCGGCTCCGTGA  68 75
JRI60_RS22550 5507598 .. 5507631 -  -9.5  -2.62263   ATGTCCGCGAGACTA     CCCTCACCCCCCG CCCTCTCC CAGAGGGAGAGGG      AGCATGCGCAACCCG  54 45
JRI60_RS22545 5506246 .. 5506274 - -10.1  -3.65522   GAGCGAGCGGAAGAA        GGAGGGCAGGGCC CTG GGCCTCGCCGCCC        ACCGCAGCTTCGTCA  67 510
JRI60_RS22520 5499113 .. 5499158 -  -2.5  -3.28712   CTTCGGGCTGTACAA CATCTCTGCC-CGCCCTCCC TTCCACC GAGAAGACATGGCGGAGCTG CTGCGTGACGCTCCT  45 247
JRI60_RS22505 5495351 .. 5495366 -  -3.9  -2.78384   CGCCCTGCTAGCAGA              GCCCG GCCCAG CGGAC               GTACATGTCGCCGTA  41 2
JRI60_RS22500 5493805 .. 5493821 -  -9.3  -3.51708   GACGGCGGAAATCAA              CCTGCGC GAG GCGCTGG              GCGAGCCGCGGCCCG  64 137
JRI60_RS22485 5490373 .. 5490390 -  -4.8  -2.53263   TCGAGCGGGAAGCCA             CGTGCC CACCGT GGCACA              GGTGGCGCGAGCGGG  42 79
JRI60_RS22480 5488778 .. 5488810 -    -9  -2.72661   GAGCACTTGGAACGA      CCCACGCCGCGCCA TGCTT CGCCGCAACGCGGG      TGCAGCAGGGCCAGC  55 101
JRI60_RS22475 NONE
JRI60_RS22470 5486503 .. 5486513 -  -3.2   -3.0792   GAATACCGCACCCAA                 CGTA CTT CACG                 CGTAGTGGTTGCGCC  42 109
JRI60_RS22465 5485768 .. 5485778 -  -8.2  -3.58343   GCCACGAGTCGCAAA                 CCGC GCC GCGG                 CGCTGGCCGGCGACG  64 142
        solA 5483344 .. 5483369 -  -2.5  -2.62184   TCGTTTCCCAGATGA         CGC-CATCGC TTACAGG GCGAAGCGCG         AGAGCTCCCACGGCA  38 9
JRI60_RS22450 5481705 .. 5481737 - -12.6   -2.5955   ACGCCTGAGAACGTA      CCTCCCGAGGCGTG GGGAA CGCGCCCCGGGATG      GGGGATGTACCTGAA  64 57
JRI60_RS22445 NONE
JRI60_RS22440 5478786 .. 5478822 -   -21  -3.08679   TGGCGGGACTGAAGA   GCCGCGCGGAGGGGTCTC GCT GAG-CCCCTC-GCGCGGC   TTCGAATCAATGCCG 100 55
JRI60_RS22430 5477425 .. 5477435 -  -2.4  -3.29144   CGAGTGCCGCGACAA                 GGTG TGG CGCC                 CGCTGCCCTGCAAGG  45 272
JRI60_RS22410 5474296 .. 5474309 -  -9.5  -2.55668   CACCCGGACATCAAC               GCGCC TCCA GGCGC                CGCTCGAGGTCCAAC  54 7
JRI60_RS22405 NONE
JRI60_RS22400 NONE
JRI60_RS22395 5471013 .. 5471054 - -16.6   -2.5547   ATCCGGGAGATCAAC CTGCG-CGAGGAGTCCGCC CGCGT GGCGGAGGCCTCGGCGCAG CAGAAGCAGGCGGAG  75 363
JRI60_RS22375 5464306 .. 5464338 -  -3.1  -2.53213   GAAGCCCCGAAGCGA      GCGCGTCGTTCGCGG GCT CAGCGCTTGAAGCGC      TCCACGGTGGAGGTC  39 10
JRI60_RS22370 NONE
JRI60_RS22365 5461824 .. 5461837 -  -8.1  -5.24531   AGGGGTGAGAAAAAA               GAGGG CCGC CCCTC                GGAGTCAGAGCATCT  95 30
JRI60_RS22360 NONE
JRI60_RS22355 NONE
JRI60_RS22350 NONE
JRI60_RS22345 NONE
JRI60_RS22340 5454404 .. 5454417 -  -2.3  -2.75064   CGCTTCATGGAATCA               CCCCC GCGT AGGAG                TAGTTGCGAGGCATG  38 1
JRI60_RS22335 5453616 .. 5453634 -  -5.2  -3.01791   ACTTCGTGCGGAAGA             TCGACGAG TGC CTCGCGGA             GGGCGCTGGCCCCAC  47 164
        ccmA NONE
JRI60_RS22300 NONE
        ccsA NONE
JRI60_RS22290 NONE
JRI60_RS22285 NONE
JRI60_RS22280 NONE
JRI60_RS22275 NONE
JRI60_RS22270 5440818 .. 5440832 -  -2.1  -3.29144   CCAGTCCTGCGACAA               GACCT GCGGG AAGTC               GAAGCCCCAGGGGCA  44 116
JRI60_RS22255 5438063 .. 5438083 -  -5.4  -2.57132   CTCTTTGGCTACAAG            CGGTGG TTCCTGCTC CCACCG            TTCCACTTCCATGGC  43 284
        hutU 5431108 .. 5431118 -  -5.4  -3.14344   CAGGGTTTCCATGAA                 TCAC TCG GTGA                 TGCCGGGGATGCGCA  49 15
JRI60_RS22225 5429842 .. 5429856 -  -4.9  -2.64616   GTCCGACTGACATCA               CGGAC AGAGG GCCCG               CTCGCTTTCTACCAC  42 8
JRI60_RS22220 5428483 .. 5428540 -  -7.5  -2.87132   CCCGTGGGGGAGATA CTCGCCGA-GGAGCCGGCGCGGAGCGC CAGCCC GAGCACCGAGCCCGCCCCGCCGACG-G TGAGGCCCGACTCCA  50 416
JRI60_RS22160 NONE
JRI60_RS22155 5414174 .. 5414192 - -10.3  -3.92373   CACGCCACGGACAAA             CAGCCTC TGGCG GAGGCTG             AGCGTATCGTCTTCG  75 104
JRI60_RS22140 5408625 .. 5408636 -  -5.8  -3.74872   AGCCAGGCCACCAAA                CTCG ATCC CGAG                 GGCGGGCGCTATCTC  60 260
JRI60_RS22115 5403482 .. 5403509 - -16.4  -4.61873   GGGGACAAAGGAAAA        GCCCAGCAATCC CTTG AGATTGCTGGGC         CTTCCAGGTTGTCCC 100 69
JRI60_RS22105 5401094 .. 5401130 -    -5  -3.15861   GACGATTCCCACGAA   CTGGCCGTCGCGTTCCA CCAC CGGCACGCGGCG-CTAG    GAGTCGTGTCGTTCA  47 199
JRI60_RS22100 NONE
JRI60_RS22075 5397236 .. 5397258 - -11.3  -3.36273   TTGGGGGAATATGAA           CGACCTCGA TGTCT TCGAGGCCG           TTGGCCTTGAACAGC  68 145
JRI60_RS22065 NONE
JRI60_RS22030 NONE
JRI60_RS22025 5388442 .. 5388483 -  -5.8  -2.89564   CCGCCAGGGCAGAGA GAGGACCTGACC-CGGAGG ACTCG CCTCCACGGTCCGCTGCTC GGTGTCACCCTCGAA  46 68
JRI60_RS22020 5387410 .. 5387449 - -18.7  -3.75378   ACGTCCATAAGACAA CCGCCCCCCTC-CCG-GCA TGGA TGCACGGAGAGGAGGGCGG  TGCGAGTGAGTCGGG  95 98
JRI60_RS22015 5385494 .. 5385507 -  -5.2  -3.86346   GCACGTTCCTAGAAA               CGCG TGAAGT CGCG                CAGGCGGGGTGCACC  60 5
JRI60_RS22010 5384424 .. 5384463 -  -5.7  -3.04144   GCGCGAGCTTCAAGA GCGTCGACCTCTTCGACGTC TAC GACGTCGT-G-GG-CGGCGC CATCACGCAGACGAA  47 113
JRI60_RS21985 5373539 .. 5373558 -   -10  -2.56596   GCCGGGAGCAATGCA            CTCCGTCG TTGG CGACGAAG             TGTCGGAGGGACCCC  57 76
JRI60_RS21980 5372136 .. 5372169 - -15.3  -3.05384   TTCGGGGTGACGCAA     GCGG-CCCGGCGCG GAGTCCT CGCGCCGGGTCCAC     CCGGCACTGGCTGAC  77 69
JRI60_RS21970 5367701 .. 5367720 -   -15  -2.70932   CCCTGGCCGCAAGGA            CGCCCCCT GCGT AGGGGGCG             TAGAAGGGTTCATTG  72 171
JRI60_RS21965 5366580 .. 5366614 -  -8.5  -2.62735   ACATCGCGCACATCA    TCC-CGGGGCCCCAGC CGCC GCTGGAGCCGTGAGGA     CCCTAGAAGGCGCCC  52 28
JRI60_RS21945 NONE
JRI60_RS21940 5362179 .. 5362200 -  -7.9  -3.21416   TACGTCCATCACCAA           CCCGGCGTC CCAC AACGTCGGG            TAGGTGTCCCGGGTT  54 54
JRI60_RS21915 NONE
JRI60_RS21910 NONE
JRI60_RS21905 5346984 .. 5346997 -  -3.1  -3.05384   CGGGGGTGGAGTGAA               GCG-GT TCC ACGCGC               GAGGGTGGCAATTCG  42 159
JRI60_RS21900 NONE
JRI60_RS21895 NONE
JRI60_RS21890 5343653 .. 5343695 -  -4.8  -3.63991   CATGACCGCGAACAA CCCGGTGGGACTG-GCCGCC GTCGA GGCCACGCAGGC-CACCGAG CTGCTCTTCGCGCTG  55 182
JRI60_RS21880 5342301 .. 5342315 -  -9.2  -3.28712   CTGGTTGCGTTACAA               CCCCGG GGC CCGGGA               CATGCGGCCGGGGAG  58 313
JRI60_RS21855 5337770 .. 5337805 - -15.4  -3.28712   CCCGGCCCGTGATAA    CTCCCC-TCCCTCTCCC TCC GGGAGAGGGTCGGGGTG    AGGGTACCCGCGCCC  80 75
JRI60_RS21835 5331075 .. 5331090 -  -2.4  -2.83715   TCGACGAGCAGGAGA              GCGAGC ACCT GTCCGC               AAGAGGGGAAGGCAA  40 138
JRI60_RS21830 5328801 .. 5328828 - -12.7  -2.60725   GCAAACTATACGAAT        GCCCGCCAGGA TGTGCC TCCTGGCGGGT         GACATCTCGAAGTCA  64 38
JRI60_RS21825 5326732 .. 5326762 -  -5.2  -3.65522   CATCCAGCTCAAGAA       GCCGGTGTCCGGGA CGG TCCACTTCACCGGC       GAGGCCGCGAGCCTG  57 164
JRI60_RS21810 5322562 .. 5322573 -  -7.2  -3.61398   CGGCGCGGGCAACAA                GGCC GGAG GGCC                 TCAGGTGGTCTCCCG  58 26
JRI60_RS21805 NONE
JRI60_RS21800 5320920 .. 5320940 -  -8.9  -3.07816   GCCGGAGGCATGGAA            GGCCGCGTG CTG CACGAGACC            TGAGCGTTGCTCACG  55 36
JRI60_RS21750 5311794 .. 5311830 - -13.5  -3.61398   CGCCTCGGTGAAGAA    GGCGGCCCCGGCGCCGG CTC CCGCCGTCAAGCCCGCC    GCCGCGAAGAAGAAG  77 124
JRI60_RS21715 5303359 .. 5303373 -  -3.5  -3.21276   GGCTTGTCGAGAAGA               CGTCC TCGGC GAACG               GGGCCTTGGCGGCCG  45 234
JRI60_RS21710 5302105 .. 5302121 -  -5.1  -4.10744   CGATTCAAAGAAGAA              GCTCG GGCGCTT CGAGC              TGCGAGTCTCCGAAG  65 353
JRI60_RS21695 5301133 .. 5301164 -   -21  -5.07652   CCGGGCAAAAGAAAA      CCCCGGAATCACTC GTGA GAGTGACTCCGGGG       CCTTGGCCAGGGTCG 100 28
JRI60_RS21690 NONE
JRI60_RS21685 5298259 .. 5298286 -  -2.6  -3.31792   CGAGTACGTGGAGAA        GCCGGGGCACGAC CTG GTCCT-CCCCGAG        GAACTGGAGGAGGGC  45 268
JRI60_RS21675 5294507 .. 5294537 -  -3.9  -3.22102   AGATGGGGGACAAGA      CGCAGTTCGCCACGG TGG CGGTGGCGG-C-GCG      CTACCAGTCGGTGTT  45 231
JRI60_RS21665 5293284 .. 5293309 -  -6.1  -3.33261   GGGGAAGCTGGACAA         GGAGCAGC-AGG CCA CCTCGTCGCTCC         CGTCGGCCTGAGACC  53 285
JRI60_RS21645 5290250 .. 5290281 -  -3.6  -3.38046   GGGGCACCTCAAAGA      CGGAGTG-GCGAGTC ACG GAATCACACGCCCCG      GACGACGAGGTGCGT  49 14
JRI60_RS21640 5289045 .. 5289089 - -17.2  -3.86935   CAATGAGGAGAAGAA GCTGGAAGGGGGAAGGGCCCA GGAA TGGAGCCCTCCCCCCTCC-GC TGACGGACCCTCGCC  95 180
JRI60_RS21635 5287799 .. 5287833 -  -9.3  -3.65046   GGTGGAGTCGAAGAA    GGGGCAGG-GCACG ACGTTCAG CGTGATCCTGCCCC     GGGGCTGAGCCCCTA  68 38
JRI60_RS21625 5285334 .. 5285347 -  -4.5  -2.77182   GCTGATAGCGAACCA               GACTC ATTG GAGCC                CCATGCTAGAGGCCC  43 70
JRI60_RS21620 NONE
JRI60_RS21615 5282415 .. 5282433 -    -3  -3.02511   CCGACGGGTGGAAGA             GGGGGATG GAG CATCGCTC             TGCATGGTGGCACCT  42 156
JRI60_RS21610 5281336 .. 5281357 -  -2.9  -2.66216   TCCCAGGACGAGAAC           GCGGCAC TCCTGGTG GTGGCGC            CCTCCTCACATGAAG  38 519
JRI60_RS21600 NONE
JRI60_RS21595 5278630 .. 5278670 -   -19  -3.53224   GATTTGGTCCCCAAA  CGCAAACCGCGCCCCTTC GACAG GAGAGGGCGCGGCTCGCG  GTGGCAGGCAACTTC  95 80
JRI60_RS21590 5277714 .. 5277752 -  -3.7    -4.015   TCATTTATGAAACAA  TCCCGGGGAGGC-AGGTC AGAT GACCTAGGCTCCCTGGTC   CATTTTTGAAACGAG  59 204
JRI60_RS21585 5276796 .. 5276811 -  -2.6  -4.56775   AGCTCGTTTCAAAAA              TGGACCT GAG AGGTC-A              GGTAACATGCCCTGC  67 41
JRI60_RS21580 NONE
JRI60_RS21575 NONE
JRI60_RS21570 5274193 .. 5274211 -  -5.9  -3.58343   CCGACGAGCCTCAAA             CCGGCGG GGGGA CCACCGA             GCGAGTCACCCGTCG  56 89
JRI60_RS21565 5273534 .. 5273547 -  -3.8  -3.53012   TTCGGCTTGCCGAAA               GCTG TGCCGC CAGC                AACTGTCGTAGTCTG  51 511
JRI60_RS21560 5271984 .. 5271994 -  -8.2  -3.17075   GCGGCGGGAATCGAA                 CCCG CGC CGGG                 CGGTGCGAAACTCCC  56 450
JRI60_RS21550 5270329 .. 5270375 -  -2.2  -2.94099   CGGCGCCAGGATACA GCATCC-CGAGACGAC-GTGGCC CCCC GGCCCCTGT-GTCACGAGGCCGC ACGGTGACACGTCGT  40 114
JRI60_RS21545 5269194 .. 5269216 -  -4.6  -3.28712   GGCCGTCTTCGAGAA           GGCGCTCGCG TTC CTCGGCCGCC           ATCCGCTCCCGCCCT  49 127
JRI60_RS21525 5262853 .. 5262866 -  -9.5  -3.72576   CTCTGCTCCAGCAAA               CGCCC GACA GGGCG                TGGAGCACACTGGTT  68 352
JRI60_RS21520 5259923 .. 5259953 -  -5.2  -2.78384   TGGTCTGGCAGGAGA       GCATGGGGCCGAGG AAA CCACGGTCCGATTC       ACTCTGTCACTCAAC  45 109
JRI60_RS21515 5258216 .. 5258231 -  -4.6  -3.14132   GTTTCCGCTGATCAA              GGGCAC CGAG GTGCTC               GCGGGGGTGCTGCTG  47 245
JRI60_RS21505 5255972 .. 5255994 -  -3.2  -3.44051   CGTGCAGGAGCAGAA           TCCGGATGCG CTC CGCTTCTGGC           AGCGGCAGGGCTACG  50 191
JRI60_RS21490 5252518 .. 5252556 -  -6.5  -3.01712   TCCGCCGCCGCAAGA  GTGCCTGAGCCGGAGCCC GTGG GGGC-CCGGCTCGGGGGG   ACTCAGCGCTTGCGA  49 28
JRI60_RS21470 5248268 .. 5248279 -  -5.8  -3.16564   CGTCGATCTCACCAA                CACC ACCG GGTG                 CGACGTGAATGACGT  49 402
        lexA 5230775 .. 5230806 - -10.7  -2.90496   GTGCCCTTGAAAGCA      GGGGGCCACGGGG TTTGAC CCCCGGAGGCCCC       TATACCCTCACCCCG  61 65
JRI60_RS21400 5222858 .. 5222873 -  -3.2  -3.92075   AGGCTGACGGAGAAA              CCGAAC CCAT GCTCGA               CGCCTTCATCATCGA  59 291
JRI60_RS21375 5218639 .. 5218667 -  -9.5  -3.16881   GATCGAGGTCACCAA        CCTCGATCAGCTC GCC GAGGCGCTCGAGG        AGGGCGCCGACGTGG  59 256
JRI60_RS21350 5210652 .. 5210700 -  -2.4  -3.28924   CACCGGTCTGGACAA GCGGCTGA-CG-GTGGGCTC-GC TGCGGC GCTGAGCCCCGGCGCTCAGCCCC CGGTGGGCTGGCTGT  44 18
        sinK 5208388 .. 5208421 -  -6.5   -3.9461   GCGCCCCAAGAAGAA     GGCCAAGGGCGCGGCC TCC GGTGGCGCCC-CGGAC     TACGGTGGCGACGAC  65 160
JRI60_RS21325 NONE
JRI60_RS21320 5204903 .. 5204914 -  -3.6  -3.93556   AGGGACGTAATCAAA                CGGA CGCC CCCG                 AACGCGGGCGAACAC  59 95
JRI60_RS21310 5200875 .. 5200891 -  -7.9  -2.84634   GTGGACAGCACGACA              GCCCCGA GCA CCAGGGC              CACCCACTTCCGCGC  52 45
JRI60_RS21300 5198939 .. 5198954 -  -3.9  -3.64703   TCGCCCTCATCGAAA              GGCGC GAGCGA ACGCC               TCTAGGGCAGAGGTG  54 1
        istA 5196480 .. 5196492 -  -5.5  -3.21099   GCTGCCCACCACGAA                GTGGC ACG ACCAC                CTGGGGGACCCGACG  49 385
        istB 5192672 .. 5192708 -  -6.5  -3.36505   ATACTTCACCGAGAA   CGCGCCCTTCGCTGAC TTCATC GTCCACG-AGGCCGCG    CACATCTTCCACAAC  53 509
JRI60_RS21265 5190335 .. 5190354 -  -4.8  -4.07678   CCGCAAAACAGCAAA            GCGGCCCG GTTG CGCGCCGT             CTCAGCGGGCATGGT  62 27
JRI60_RS21260 NONE
JRI60_RS21255 5188023 .. 5188033 -  -2.4   -3.5511   GGCCACGGAGAAACA                 GGCC AGG GGCA                 CCTACACCCTCATCC  48 338
JRI60_RS21210 NONE
JRI60_RS21205 NONE
JRI60_RS21200 NONE
JRI60_RS21195 5178725 .. 5178738 -  -3.1  -2.82516   GGTCCCATTAGGAGA               CGAGCT TCG AGC-CG               ATGAAGCGCAGGAGC  41 4
JRI60_RS21190 5178166 .. 5178194 -  -8.8  -2.88544   CGGCAGGCTCATATA       CCCGCC-CCGTCC AGAC GGACTGCGGCGAG        CTGTTACGGATTTTA  54 343
JRI60_RS21185 NONE
JRI60_RS21180 5175871 .. 5175881 -  -6.8  -3.01712   GCGCCCGTCGGAATA                 CGCA GGC TGCG                 ACCCGATCTTCGGAG  51 158
        grpE NONE
JRI60_RS21170 NONE
JRI60_RS21165 5172274 .. 5172325 - -11.4  -3.89614   AACGGACAGAGGAAA GGCGGGCAGCAAGCACCACCTGGTC GTA GACC-GCCGGGGCCTGCCGCTGGCC ACCTTGCTGTCGGCC  78 462
JRI60_RS21155 NONE
JRI60_RS21150 5169677 .. 5169687 -  -2.4  -4.09685   CCCTACCTGGCAAAA                 GCCC TGA GCGC                 CTCATCCCAGCTCAT  58 2
JRI60_RS21145 5166772 .. 5166790 - -10.2  -3.27525   GTGGTTCAAATGCAA             CCGGGTTG CAT CATCCCGG             GCGCGGAGCTACGAG  63 151
JRI60_RS21140 NONE
JRI60_RS21135 5164158 .. 5164177 -  -4.3  -2.90075   CCCTTCGCAAGGAGA            TCACGGA TGCGCC TCCATGA             GGGGTGGAGTGGCGG  44 6
        ribD 5162826 .. 5162842 -    -3  -2.60075   TCTCCTGGAAGGAAG             CTGTCTG TCTT CAGAC-G              TTGGCGCAAGCGGGC  39 19
JRI60_RS21125 NONE
JRI60_RS21120 NONE
JRI60_RS21115 NONE
JRI60_RS21110 5147872 .. 5147883 -  -4.4  -4.85782   CGCTTTAAAAAGAAA                GTGA CCAG TCAC                 TCACTAAATGGAATA  82 292
JRI60_RS21105 NONE
JRI60_RS21100 5145896 .. 5145930 -  -3.5  -2.73364   GTCGGACCTGAAGGA    GCCGGCGAGGAG-CCTG ACG CGGGACTTCT-ACCGGC    GGGTGCTCTTCGAGG  41 367
JRI60_RS21090 5143280 .. 5143291 -  -2.2  -3.53018   TTGAGACAGCAAAGA                TCGG AGGT CCAA                 CACCCTCAGTACAAG  48 31
JRI60_RS21085 NONE
JRI60_RS21080 NONE
JRI60_RS21075 NONE
JRI60_RS21070 5138808 .. 5138826 -  -5.8  -3.33162   GACTTCAGCGCACAA             GCCAGGCG TCG CTCCGGGC             CAAGTCGTACGTAGC  51 67
JRI60_RS21010 NONE
JRI60_RS21005 5116706 .. 5116740 - -19.4  -2.64472   GACCTCGCAAAGGTA    GAGGGCGGCTCCGGA CTCTTC TCCGG-GCCGCCCTC     GCACACTTCCGCCTA  93 55
JRI60_RS21000 5116098 .. 5116130 - -10.5  -3.06796   GTCGACGTGACCGAA      GCCGACCAGGCGC GCCTGCA GCGCGTGGTGGGC      AGCTTCAAGCGCTGA  60 65
JRI60_RS20990 5114430 .. 5114456 - -12.2  -3.14132   TTCCTCTTCCAGGAA         TGGCCGGACACA CGG TGGGGCCGGCCA         GGCTCGAGCACGCGC  69 278
JRI60_RS20985 5112866 .. 5112886 -  -4.5  -3.79906   GGACCTGGAGAAGAA            CGTCGAGCG TTT CGCCCGGCT            CGGCATCCGCGAGTA  58 477
JRI60_RS20965 NONE
JRI60_RS20960 NONE
JRI60_RS20955 5103405 .. 5103433 -  -2.3  -3.27022   TGCACGTTAGATGAA        TTCGTCCACCCCT ATA AAGAGTGAGCGCA        TGTGGGCAGATCCGC  44 111
JRI60_RS20950 5102600 .. 5102631 - -15.9  -3.60151   GGCCTGAAACGACAA      GAGGGTCACCCCC TTTCCC AGGGGCGACCCTC       CAGTGGGTATCGCCG  83 85
JRI60_RS20935 5099260 .. 5099273 -  -3.1  -3.05463   ACTGGCGGGACTCAA               CCTGTG GGG CAC-GG               AGCTGGTGGTGCTGT  43 482
JRI60_RS20910 5084898 .. 5084910 -  -5.5  -3.28712   CCGCTGGGGCTACAA                GCCCT GGG AGAGC                CGCGACGGGCATTCC  51 471
JRI60_RS20890 NONE
JRI60_RS20885 5078899 .. 5078943 -    -2  -3.84639   CAAGAGCGAGAAGAA GGATCGGGAGCGCAAGGAGATC GAG GAGCGC-TTGCGCCCCCCG-CC GCCGCGGCGGCCCGA  55 125
JRI60_RS20840 5067580 .. 5067608 -    -8  -3.14564   GTACTCCGTCACCAA        GCACATGGGCGA GCAGG CCGCCCGGGTGC        TCGCGCCCGGCTGTG  54 440
JRI60_RS20825 NONE
JRI60_RS20820 NONE
JRI60_RS20815 NONE
JRI60_RS20810 5061683 .. 5061703 - -14.1  -3.20382   CGCGACATTCAGCAA            CTGGTCTGA CAG TCAGACCAG            TTCGTGCCGCGCGCG  73 59
        nadB NONE
JRI60_RS20755 NONE
JRI60_RS20750 5050887 .. 5050923 -  -7.2  -3.02144   TCATCCTCCCGAACA   CCGAGCGCGTGGTGC TGCGCATG GCCTC-CGCGCTCGG    CAAGGTGGAGATGCG  52 72
JRI60_RS20700 NONE
JRI60_RS20695 5038150 .. 5038194 -  -8.5  -2.53876   TGTCAGCTGAAGGCA GGTGCATGCAGGGGAGACGGC GTCAG GCTGTCTCCCC-GCTGGC-CC TCATGCTCGGCGGCT  52 40
JRI60_RS20690 NONE
JRI60_RS20685 5033833 .. 5033865 - -10.4  -2.81464   CGATGACCGAGGAGA      CCCGCTCCCCAGCC GAGTG GGCGGAGATGCGGG      GCCGCCACGTCCACG  57 390
JRI60_RS20675 5032221 .. 5032237 -  -7.9  -2.89564   CGCTCATGGGAGACA              GGGAGAG GAG CACTCCC              CGCGCACTCATTGAG  52 74
JRI60_RS20655 5027377 .. 5027408 -  -6.4  -3.26947   CAAGGTCTACAGCAA      CGACCAGCCGGGCA TCGC CGCCCGCGTGACCG       CGCTCCTCCGCCAGC  51 287
JRI60_RS20645 5025765 .. 5025783 -  -6.6  -2.79809   CAAAAACGGGAAGCA             CGAGGGCT CTC AGCCGCCG             AGTCGGCTCGCCGCT  47 518
JRI60_RS20640 5022853 .. 5022903 -  -4.5  -2.70932   GCTGCTCGTGAAGCA GGAGCGGTG-GCGCGACTCGCT-GG AAG CCTACCGTCTGGCGCTCGCCGCCCC CGAGCAGCGCATCGC  42 488
JRI60_RS20625 5018806 .. 5018816 -  -2.4  -3.21099   GGGCGGGAGGAGCAA                 CGAC TCA GACG                 GTGATGCCGCAGGGG  42 19
JRI60_RS20620 5017180 .. 5017199 -  -6.3  -3.47349   TGCGGAAAGGGACAA            GAGCCGG TTCGAC CCGGCGC             CGAGCAAGGCGCTGA  56 211
JRI60_RS20600 5012924 .. 5012934 -  -2.4  -3.16564   GCGCGAGCGGATGAA                 GGCC GAG GGGC                 TGCTCGCGAAGGTGC  44 233
JRI60_RS20590 5011015 .. 5011042 -  -5.4  -3.14132   CGTGTCGGTGATGAA        GGAC-GCGGGCCG CCT CGACCCGGAGGCC        GGGCGTTACTTTAGC  49 257
JRI60_RS20570 NONE
JRI60_RS20565 5002161 .. 5002186 - -10.4  -3.33696   CGGGCCGGCAACGAA         CTGCGGCTGT ACGTCG ACGGCCGCAG          GGTGGGAGTCATAAC  64 323
JRI60_RS20540 4995424 .. 4995448 -  -7.7  -3.33361   CACGAACCACATGAA          CGTGGCCACGG GCA CCTGGACCACG          TGGTACCAGGCGCCC  55 498
JRI60_RS20530 4993217 .. 4993245 -  -2.5  -3.08464   TCAGGAGCCAGCCAA       GAAC-CCATACG AACCCG CGTATCGCGTTC        CCTTTCACGGCCGTC  42 40
JRI60_RS20525 NONE
JRI60_RS20520 NONE
JRI60_RS20515 NONE
JRI60_RS20510 4988459 .. 4988488 -  -2.7  -3.36216   TTGAAATTACAAAAG       TCTCTCCCCAATC CGTT GCTTGGGGAATGT        AGAAGCTTGGGAGAG  48 49
JRI60_RS20505 4987707 .. 4987735 -  -3.7  -3.35679   TTGTCCTAGCGAGAA        CCTGACTGCTCTG GAG CAGATCTGCCACG        TGCGTGACATCGAGC  47 382
JRI60_RS20485 4982173 .. 4982186 -  -5.2  -3.33261   CCTCAATCCGGAGAA               CCGG CGCCGT CCGG                AGGTGGACCTCCCCA  51 261
JRI60_RS20460 4978035 .. 4978056 -  -7.1  -2.53382   AGTAGGGCCAATCCA           GTCGCGGCG TCCA CGCCGTGGC            CAGTGGTGTCGCGAG  47 51
JRI60_RS20450 NONE
JRI60_RS20445 NONE
JRI60_RS20435 4971479 .. 4971498 -  -4.9  -2.77899   CTCCTTCATCAATGA            CGTCGGC TTGCTG GCCGAAG             AGGTGCACCCGAGCC  42 214
JRI60_RS20420 4968136 .. 4968166 -  -4.5  -3.53444   GTACGGCGCCGCAAA       TGGAGCCAAGCGG GCCGG CCGCCGTGCTCCT       CCCCTCTGTGTCAGG  52 81
JRI60_RS20415 4963762 .. 4963772 -  -6.8  -3.21099   CGCTGGCACCAGCAA                 CCTG GTG CAGG                 TCACCTTGCGGCTGG  51 125
JRI60_RS20395 4958865 .. 4958876 -  -5.8  -3.28712   CCGTGTCGGTGAGAA                GACG GACG CGTC                 AGTGCTCAAGTCGTG  51 234
JRI60_RS20370 4950412 .. 4950423 -  -5.8  -3.60627   CGACCCCACCCCAAA                CGAG GAGG CTCG                 GATCGTCTTAGGGGT  54 194
JRI60_RS20310 NONE
JRI60_RS20305 NONE
JRI60_RS20300 NONE
JRI60_RS20295 NONE
JRI60_RS20290 NONE
JRI60_RS20285 NONE
JRI60_RS20280 4931087 .. 4931113 - -12.2  -3.17392   TAGGGCCCAACCCAA         CCTCCCTCTCCC TCT GGGAGAGGGTCG         GGGTGAGGGTATAAG  69 105
JRI60_RS20235 NONE
JRI60_RS20230 4922117 .. 4922145 - -14.5  -3.01712   TCCCTCCCTCCAACA        CCCTCCCTCTCCC TCT GGGAGAGGGTCGG        GGTGAGGGTAGGTAG  74 85
JRI60_RS20205 4916507 .. 4916564 -  -5.3  -3.18264   TCGCTGACGGAGCAA CTGCTGGAGTCACGGGCGCGCAGCGAGG TGA CCTGGCTGCGCGCCTTCGTGGGCAG-AG CCACGCTCCCGTGAG  49 51
JRI60_RS20195 NONE
JRI60_RS20190 NONE
JRI60_RS20185 NONE
JRI60_RS20180 NONE
JRI60_RS20175 4909144 .. 4909156 -  -3.3  -4.11216   CGCGGAGGCCGAAAA                CTCGG CTC CGGAG                CGATTGGCACGCTTT  59 199
JRI60_RS20170 4905750 .. 4905765 -  -4.7   -3.9122   GACGTGCGTAAACAA              TTCGC CGCCCT GCGAA               ACGAGATTTCCACCT  61 513
JRI60_RS20140 NONE
JRI60_RS20135 4899321 .. 4899337 - -10.9  -3.54919   AAGGAGGGCCCGAAA              GGGGAAA AGT TTTCCCC              GATCGCGGGTGCCTA  70 85
JRI60_RS20130 4898472 .. 4898509 -  -7.6  -3.28712   CTTCGGTGGGCACAA   GCACGCGGCCGGCCTC ACGGTG GAGGCCAAGCACCTGC    CCGCCTTCCGCGAGG  55 483
JRI60_RS20120 4896331 .. 4896367 - -15.8  -3.73224   TGAGTGCGCACCAAA   GGCCCTCGTGCTCCGCG TCAC CGCGGGGT-CGAGGGCC    TTCGGTGTTTCAGGG  85 49
JRI60_RS20085 4888625 .. 4888673 -    -3  -3.23216   GGCCAGCATCAGCAA GGCAAGGCTCGCAGCGCGCATGTG TCT CCCTTACGCGCCGCC-G-CTTGCT CCGTCCAGCCTCAGC  46 36
JRI60_RS20080 4888247 .. 4888259 -  -2.6  -3.28712   GGGTCCTGGGTACAA                CCCG TGGGC CGGA                TACCCTCACCCCGTC  44 88
JRI60_RS20075 4887180 .. 4887234 -  -7.7  -3.39732   CAACCACCCCAAAGA GGTGACTCCCGAGGCCCGCGAGGC-CT GCG AGCGGCTCGTGGACCACGGC-GTCCCC GTCGAGAACCAGGCC  55 438
JRI60_RS20020 4872456 .. 4872484 - -14.5  -3.40907   CGACATCAACACCAA        CCCTCCCTCTCCC TTC GGGAGAGGGTCGG        GGTGAGGGTACCCGA  75 157
JRI60_RS19985 4864650 .. 4864672 - -15.6  -3.15249   GACACCGTGCATCAA           CCCCTCTCCC TCT GGGAGAGGGA           AAGGGTGAGGGTAAG  78 249
JRI60_RS19965 4858395 .. 4858410 -  -6.1  -3.28791   ACTCGGTTGCGAGAA              GCAGC TGCGGC GCTGC               CTGGCCGCGGGGGGC  53 491
JRI60_RS19955 NONE
        lpxB 4856155 .. 4856170 -  -4.6  -2.94144   TGGGGATGCAAACCA              GCGCTG GATT CATCGC               GCGGCGGGACATAGC  44 62
JRI60_RS19945 4855456 .. 4855477 -    -5  -2.87211   AGCTGCTCGGACATA           CGCCCCTC TACACC GTGAGGCG            CAGCTTCCACACCAT  44 11
JRI60_RS19940 4854363 .. 4854376 -  -5.9  -3.18264   GTTCCGACGGATGAA               GCGAC TCGT GCCGC                CTGCCCTGATCGCCC  51 357
JRI60_RS19880 4841455 .. 4841469 -  -2.7  -3.35798   ACTGGCGACGCAGAA               GCGGG GCCCT CCCGT               GTAGAGCTCGAGGCA  48 250
JRI60_RS19835 NONE
        mazG 4821931 .. 4821957 -  -2.1  -4.07885   TACTTCTGTGGAAAA         GAGGGGCCGTA CCTAC TTCGGCGCCTA         CCGAGCGTCAAGGCT  58 83
        rpsT 4821436 .. 4821452 -  -6.5  -2.70932   GCGGCTGTCGAAGGA              CGGACAG GTG CTGTCGG              AGACGACCGTCTCCG  46 193
JRI60_RS19760 4815277 .. 4815309 -  -4.8  -3.15249   GACATGGTCGATGAA     CTGGTGAGGACGC TGGGGCTC GCG-CCCCACCCG      GAGGGAGGCTTCTAC  47 465
JRI60_RS19745 NONE
JRI60_RS19740 NONE
JRI60_RS19730 4810273 .. 4810284 -  -2.2  -3.93288   TGTGATTCAACGAAA                CTGC CGCG ACAG                 CTCGTCGATACGGCC  56 5
JRI60_RS19725 4809708 .. 4809725 -  -4.8   -2.9155   GCTTGCAATAGCAGA             CGCGCA GCTGTG TGCGCA              GGGCATCCAGTCAGT  44 80
JRI60_RS19720 4808812 .. 4808825 -  -5.2  -2.66316   TCTGGCACTACACCA               CGCC CCTGAT GGCG                AAGCCGCGCGGCGAG  43 155
JRI60_RS19650 4795906 .. 4795926 - -14.1  -3.14132   CGCGCTTCGGACGAA            CTGGTCTGA CTG TCAGACCAG            TTGCTCTCGAGCGCG  73 93
JRI60_RS19635 4791357 .. 4791390 - -13.9  -3.85698   GCCCTGCCCGAGAAA     GGGGCCCCCGAAT GCATGAAG ATTCGGGGGCCCG      TTGCGCTACGGCGCG  83 31
JRI60_RS19630 NONE
JRI60_RS19625 NONE
JRI60_RS19620 4788514 .. 4788530 -  -7.3  -3.54424   CTCCAGTTCGCTAAA              CACGTTC AAT GAACATG              TTTAGCGAGTTCTGG  58 66
JRI60_RS19615 NONE
JRI60_RS19610 4786787 .. 4786804 -  -9.1  -3.28924   CACGGTGGCCTACAA             CGAAGCG CTTT CGCTCCG              CCGCGCCGAGGCCGT  58 214
JRI60_RS19600 4785177 .. 4785197 -  -9.7  -3.02263   ATATCCGGCGCAACA            CGAACGTGA GCA TCGCGTTCG            GTCACGGGGCGCACT  57 268
JRI60_RS19575 4780697 .. 4780749 - -11.2  -3.31144   GGCCGAGCTCGAGAA GC-GCTT-CGAGCGCCTCCAGGGGCG TCG CGCCCTCGAGGACGCGCGGAAGCTGC TGGGGGAGGTGCTCG  64 106
JRI60_RS19565 4779771 .. 4779794 -  -9.5  -3.04144   CGCTCACCGTGAACA          CGCCCTCCT TCGAGC AGGTGGGCG           AGGATCTGCTCCTCC  57 77
        rpmF 4770206 .. 4770246 - -18.4  -3.59262   GCCGAGAGGCCCAAA GCACAAAGGCCGC-CCCTC GTGG GAGGGAGCGGCCTTCTTGC  CTTCCAGCGGAGCTG  95 56
JRI60_RS19500 4767055 .. 4767091 - -16.7  -2.70932   GGGGGCCCGGAAGCA   CG-GAGGCCGCCACCTC GTGAA GAGG-GGCGGCCTCTCG   TGTTTCGAGCCTGGG  77 61
JRI60_RS19490 NONE
JRI60_RS19485 4764865 .. 4764891 -  -9.3  -2.57132   CGCCTGGGTGACAAG         GCGTGTCCGCC CGCCC GGCGGCCACTC         AGGGGGCGAAGGTTG  54 24
JRI60_RS19480 4764070 .. 4764088 -    -3  -3.20227   GGGGAAGCAGGAAGA             GGCGCG GGGGCAT CGGGCC             GTACCGTCAGGGAGG  44 32
JRI60_RS19475 NONE
JRI60_RS19470 4761423 .. 4761435 -  -6.9  -3.14564   CCACCGGGTGATGAA                GGCCC TCC AGGCC                TCGACCGACTCCATC  51 351
JRI60_RS19460 4759914 .. 4759935 -  -2.2  -3.28791   ACGCGTCTGCGACAA           GTACGTGA CATCAC TCACGCGC            GGTGAAGGTCCTCGG  44 18
JRI60_RS19455 4759099 .. 4759119 -  -5.3  -3.53012   TGTCCGTTGTTGAAA            GACGCGGAC CAT GTACGGGTC            GTTCGTGGCCGTTTG  54 75
JRI60_RS19450 NONE
JRI60_RS19445 NONE
        pstC NONE
        pstA NONE
JRI60_RS19430 NONE
        phoU 4753398 .. 4753415 -  -2.5  -3.74693   CGGGACGTTAGGAAA             GCCCGGC GACT GCCCCGC              GACGGTCCCGCGTCA  51 85
JRI60_RS19420 NONE
JRI60_RS19415 4751117 .. 4751150 -  -3.1  -3.29511   TGTACGTGGGGACAA     CTCCTCAGCGGGAATG TGC CATCCAC-CTGGGAAG     CAAGGCCGCCTGGAG  46 61
JRI60_RS19410 4750674 .. 4750684 -  -4.6  -2.62616   TCACCGTCTATAGCA                 GCAG GAG CCGC                 TTACGGAGCCGGAAA  42 52
JRI60_RS19405 NONE
JRI60_RS19400 NONE
JRI60_RS19395 NONE
JRI60_RS19390 4747142 .. 4747157 -  -3.2  -3.35679   GTCTGTGACTCAGAA              GGAGGT GCCC ACTTCC               AGCAGACCGAGCTGG  48 4
JRI60_RS19385 NONE
JRI60_RS19370 NONE
JRI60_RS19365 4714351 .. 4714367 -  -2.1  -3.14132   CGCTGGCCGGATCAA              TCCGGAG GGC CCCCGAT              ACCCGAACGTGCCGG  42 335
JRI60_RS19350 4712195 .. 4712211 -  -2.1  -3.05384   TCGTCCTTGACGGAA              TCGTCCG GGT CGCACGC              CGCGCCGGCCCCACC  41 186
JRI60_RS19345 NONE
JRI60_RS19340 4710763 .. 4710789 -  -3.6  -2.92246   GGAAGTCGAAGGACA         TGCGGAGCAC TCTGCCG GTGCTTCGCC         GCACGGGCTGTGACG  43 309
JRI60_RS19335 NONE
JRI60_RS19330 NONE
JRI60_RS19325 NONE
JRI60_RS19320 4706556 .. 4706581 -  -3.2  -3.53012   TGCTCGTTCGCCAAA         GCATCGAAGC CCTACC GCTACGACAC          ACACCAGACTGCCCT  49 87
JRI60_RS19315 NONE
        tssB NONE
        tssC NONE
JRI60_RS19300 NONE
        tssK NONE
JRI60_RS19290 NONE
JRI60_RS19285 NONE
JRI60_RS19280 NONE
JRI60_RS19275 NONE
JRI60_RS19270 NONE
JRI60_RS19265 NONE
JRI60_RS19260 NONE
JRI60_RS19255 NONE
JRI60_RS19250 4685194 .. 4685216 -  -4.6  -3.42699   ATGGATGCAGCAGAA           GTCGCCTCCG TGT CGGCTGCGGC           CTGCCCACCTGAATC  51 320
JRI60_RS19235 NONE
JRI60_RS19225 NONE
JRI60_RS19220 NONE
JRI60_RS19215 4669499 .. 4669539 - -15.3  -3.73336   ACTCGAAGGCAACAA  GGCCGTCGTTCGCCGCTAC TTC GAAGAGGTGATCGACGGCC  GCGCCAATGTCCTGG  85 442
JRI60_RS19190 NONE
JRI60_RS19185 NONE
JRI60_RS19180 NONE
JRI60_RS19175 4654319 .. 4654334 - -10.4  -2.64099   GCGTTGGAGGAGAAG              CGCGTG TTCT CACGCG               GCCGCTTCGGTGGCT  56 192
JRI60_RS19160 NONE
JRI60_RS19155 4646446 .. 4646467 -  -7.3  -2.67515   GCGAGCACGAGACGA           TCGACG-ACG AGC CGCACGTCGA           GGTGCTCGCCAACGC  48 108
JRI60_RS19140 4636579 .. 4636597 -    -3  -3.61178   GCCACGGACTTGAAA             TCCTCAAG CTT CCCGGGGA             CTTAGCGTCTCCTCG  49 47
         ffh 4634732 .. 4634773 - -20.2  -2.85297   GGACCTTAAACAGCA GCGCCGCTCCAGGAGGCCC TCCGT GGGC-TCCCCGAGCGGCGC GTGTCCCGCAGCGCT 100 58
JRI60_RS19130 4632451 .. 4632483 -   -17  -3.61646   AACTCTACAAACGAA      GGCAGAAGCGGCGC GTGCT GCGCCGCCTCTCCC      GAGGGCTTGTCGTTC  90 90
JRI60_RS19070 4603661 .. 4603684 -  -6.6  -2.85999   GCAGGCCATAGCAGA          GCGCCCTGAC GCGC GTCAGCCCGC           TACACGCACGTTCAG  48 52
JRI60_RS19065 4602450 .. 4602477 -  -3.3  -2.71364   GGATCCGGGCAACTA        CCGGGTGCGGCG CATCT CTCCGCA-CGGG        ACGGTGACCACGCTG  40 242
JRI60_RS19050 NONE
JRI60_RS19045 NONE
JRI60_RS19040 NONE
JRI60_RS19035 4593813 .. 4593849 - -14.6  -3.37245   CCAGGGGAAGACGAA   GAGCGGCATC-CC-CGTC TAC AACGTGGCGATGCCGCTC   ATGACGAAGATGCAC  75 83
JRI60_RS19020 NONE
JRI60_RS19015 NONE
JRI60_RS19010 NONE
JRI60_RS19005 NONE
JRI60_RS19000 4587212 .. 4587261 - -14.5  -2.75957   GACGAAGGGCAAGGA GCTGGAGGATATGTAGTGGCGCGG CGCGT CCGCGCC-CT-CAG-TCCTCCAGC GCGGACACGTCCGGG  72 13
JRI60_RS18980 4582316 .. 4582361 - -12.5  -3.32698   CGAGTCCAGAGAACA CGCACGCCCCTCCCTCGTCTCG AAC CTAGA-GCGGAAGGGGCGCGGG CCCAAGGGACTATGC  71 35
JRI60_RS18975 4581426 .. 4581442 -  -9.3  -3.15544   GCTCACCGCCAGCAA              CCGCGCC CAG GGCGGGG              CGTGTCTGCGCATCG  59 102
JRI60_RS18965 4579619 .. 4579664 -  -7.6  -3.34233   CTACAAGGGCGAGAA GGCCATCGCCGCGCGC-GCGGC GAGGAT GCTGCTGCGCGCGG-G--GGCC AGTCTCGTCCTCTCC  55 67
       groES NONE
        groL 4575461 .. 4575505 - -23.6  -3.55444   CGGGGACGCCCGAAA CGCGAACGGCCCCCGGCTCC ACGAG GGAACCGGAGGCCGTCCGAG AGACCTCGGAGCGCG 100 74
        grxC 4575082 .. 4575095 -  -5.2  -3.05384   TGGGTGCCCACCCAA               GGCG GGCGGT CGCC                TGCTCCCAGGCGGCT  47 40
JRI60_RS18930 4574527 .. 4574547 -  -5.3  -3.08996   GACTGGGAGTGAAGA            CGACCCCCG TTC CGGGAATCC            AGCCCCTCGCGCGCA  49 57
JRI60_RS18925 4572833 .. 4572861 -  -4.4  -3.01712   TTTGGGGTTGGAACA        GCGGGGGCCTCA TTTAT CAAGGCCCTCGG        CGTTCTTGAGATCCT  45 6
JRI60_RS18920 4571562 .. 4571590 - -20.3  -4.54727   GTCCGCAAACGAAAA        GGCGTGGGACCCG GAC CGGCTCCCACGCC        TTCGTCATGTCAGGA 100 61
JRI60_RS18915 4570145 .. 4570174 - -19.3  -4.77165   CCCTCGAGAACAAAA       GGCGCGGAACCCA TGTC CGGGTCCCGCGCC        TTCGTCATTCCAGGC 100 55
JRI60_RS18905 4565006 .. 4565040 -  -9.3  -3.28712   CGCCCGGCGCGACAA    GC-CCCAGC-AGGGAGG ACG CCTCCTTCGCCGGGAGC    GGTTGCGCTGGGTCA  61 467
JRI60_RS18895 NONE
JRI60_RS18890 NONE
JRI60_RS18885 NONE
JRI60_RS18880 4559910 .. 4559923 -  -5.9  -3.78449   AAGAATAGATTTAAA               GCAGG TTAT CCCGC                GAGTAAAGCATTCTT  62 240
JRI60_RS18875 4557205 .. 4557245 - -20.5  -4.06502   TAGGCGGAAATGAAA CGGCCCACTCCCGCCGCG AAGCTG CTCGG-GGGAGTGGGCCG  CTGATGTCGAGACTG 100 51
JRI60_RS18865 4554309 .. 4554319 -  -6.8  -3.50853   CTTTCCCAATGACAA                 TGGC TTC GCCA                 TCCAGGAGAAGAAGG  56 514
        prfA NONE
        prmC NONE
        murA 4546152 .. 4546175 -  -6.6  -3.16564   TGTTCACGCCAGCAA          CTCCGGCC ACCCCCCG GGCCGGGG           TCTCAGGCCTTCACA  51 28
JRI60_RS18825 4545596 .. 4545606 -  -8.2  -3.06183   GGGAGGGGGAGGGAA                 GGGG ACA CCCC                 CGGAGGGGCGTCAGA  55 36
JRI60_RS18820 4543449 .. 4543475 -  -7.9   -3.8917   TGTCAACGAGAAGAA         TCGAGGGTGGC TATTC GCCCTCCTCGA         CGGTGAGCTGGTAGG  66 9
JRI60_RS18815 4543274 .. 4543322 - -21.2  -4.36914   TTGTGGCCCAGAAAA CAGCGAAGCCGGCAATTCCTCGG TGAA CCGAGGAACTGCCGGCCTGG-TG AGCGGCGGACGGGAT 100 24
JRI60_RS18810 4541247 .. 4541268 -  -5.8  -4.72272   GGCCGCGAGGAAAAA           TTCCTCCC TCGGAT GGGAGGCA            GGGAAGACCCCGGCC  81 106
JRI60_RS18805 4539906 .. 4539919 -  -9.5  -2.79183   TCTACCTGCACGACA               CGCCG AACC CGGCG                CTCTTCACGAAAGCG  54 328
JRI60_RS18795 NONE
JRI60_RS18790 4533699 .. 4533722 -  -2.2  -3.62046   GGACGCGGCGAAGAA          GGCGGACGGC TACC GCTACACGCC           GAGCCAGCAGTTCTT  51 277
JRI60_RS18770 NONE
JRI60_RS18765 NONE
JRI60_RS18760 4526785 .. 4526796 -  -3.6  -3.40403   TCTGGCGCATCAGAA                GCGG TACC CCAC                 GCCGGCCCATCCACC  49 8
JRI60_RS18755 4525687 .. 4525710 -  -5.2  -4.13014   CCCAGATTCTCAAAA          CACGCCGTGA ATCC TAACGTCGTG           GACGGCAGACGGCGC  64 15
JRI60_RS18750 4523153 .. 4523181 - -21.7  -3.08679   CTCCCTGAGCGAAGA        GGCGGCTCCGGTG TTT CCCCGGAGCCGCC        GGACCACTCGAGCTA 100 38
JRI60_RS18725 NONE
JRI60_RS18720 4516710 .. 4516731 -  -3.6  -2.67188   CGACACGAGTACAAG           GACCACCC CACACC GCGTGGCC            AGGGCCAGCAATGGA  41 66
JRI60_RS18715 NONE
JRI60_RS18710 4514542 .. 4514568 - -15.1  -2.78384   CGGTGGTGGACGACA         CCCCCGCGCAC GTGAA GCGCGCGGAGG         CGGGGGAGCGGTGGA  72 330
JRI60_RS18690 4510857 .. 4510891 - -12.1  -2.72344   CGTCATCCCCAATCA    GACCTGAGCGAGGGGC CTCA GCCCTTCGCCC-GGCC     GCCGCGCGACGGCTT  65 8
JRI60_RS18650 NONE
JRI60_RS18645 NONE
JRI60_RS18640 NONE
JRI60_RS18635 4498259 .. 4498279 -  -6.7  -3.01712   GCCTCGCCCTCAAGA            CACGGTAGG ACG CCATCCGTG            ATGGATTCGGCGGAT  51 443
JRI60_RS18600 4490891 .. 4490921 -  -3.8  -3.01712   GCTGGTGGGCGAAGA       GATCGTCTCGTCCG TGG CCATCGAGACGCCC       GAGCAGCACCTCGAC  44 298
JRI60_RS18590 4489750 .. 4489760 -  -8.2  -3.38812   GGGTGGGGAAGAAGA                 CCGC CGA GCGG                 CTCGTGCTGGAGCTC  58 283
JRI60_RS18565 4485432 .. 4485446 -  -3.5  -3.09327   CGATTTCACCGAAGA               GCAGA TGAAT TCCGC               ACTCCGCCGCGCCAG  45 398
        rtcR NONE
JRI60_RS18540 4478293 .. 4478309 -  -8.7  -3.07443   CGACATCCTACGGAA              GGGAACC CGG AGTTCCC              CAGCGCTTTAGCCGC  55 33
JRI60_RS18535 4476920 .. 4476932 -  -4.7  -2.52464   GGCGCCGGGAAGGGA                GCGGC TCA GCCGA                TGCGGCCGATCTCCG  42 18
JRI60_RS18530 4475491 .. 4475504 -  -4.5  -3.78775   GTCGGGATCACCAAA               GAGGA CCAC TCCCC                CGGCCCTGAGCGCAA  58 517
JRI60_RS18520 NONE
JRI60_RS18515 4474105 .. 4474121 - -10.9  -2.70932   TCCGGGGCGGAAGCA              TGAGAGG GTG CCTCTCA              GAAACGAGGGCGGTG  60 154
JRI60_RS18505 NONE
JRI60_RS18500 NONE
JRI60_RS18495 4469080 .. 4469114 -  -4.9  -3.02144   GCAGCTCCTCCAACA    GGTCCTGCACGGCC GCGGCGTA GGCCGCGC-GATCC     TTCGCGGCCTCCACC  45 353
JRI60_RS18490 4467020 .. 4467061 -  -3.5  -2.52464   GGGGGCGCGAAGCTA TCAGCGCC-CGGGCCTTCCC GGT GGGAAGTCCGGCGGGGGTGT CGAGTGCCACCCGCC  40 59
JRI60_RS18485 4466338 .. 4466389 -  -2.9  -3.16564   CCTGGAGCTCACGAA GACCTTCACCGTGCGCG-GGGGC-CG GAT CGAGCTCTTCGCCCACGAAGA-GGTC CGGAAGGTTCGTTCC  44 258
JRI60_RS18440 NONE
JRI60_RS18435 NONE
JRI60_RS18430 4453061 .. 4453083 -  -7.6  -2.77899   GTTCGCGATCAACGA           CGAGGACTGG CTC CCAGGCCCCA           ACTACACCCTCGATC  49 237
JRI60_RS18415 NONE
JRI60_RS18410 4447115 .. 4447131 -  -7.9  -3.31144   GGCGGAGCTGGAGAA              GCTGCAC CAG GAGCAGC              AGGCGCAGACGGCGC  55 449
JRI60_RS18400 NONE
        iscU NONE
JRI60_RS18390 4443047 .. 4443072 - -11.1  -4.19735   CGGGGCAAAACGAAA         GGGCCCGGC TTTCCGCG GCCGAGCCC          CCAGATGACTCTCGA  89 92
        hscB NONE
        hscA NONE
JRI60_RS18375 4440154 .. 4440164 -  -5.4  -2.70932   CGTCCCCGTCAAGCA                 GTTG TTT CAAC                 CTCACTTCTTCAACG  45 27
JRI60_RS18370 4439959 .. 4439994 - -22.8  -4.59773   GCTGACGCGGAAAAA    GAAAAAGGCCCCGACT TTTC AGTCGGGGCCTTCTTC     AGTGCCCAGGAGAGG 100 28
JRI60_RS18355 4435864 .. 4435922 -  -3.8  -3.10343   AGAGCGAGGAGGGAA GGGGCTCGACGTTCTCGTTCGGCCTG-GC CCTG GCTCAGGTCGAGC-AGGAGG-CGAGGCCC TGAGACCCGGACGGC  45 41
JRI60_RS18335 4429576 .. 4429590 -  -3.5  -3.08464   CCACCACGGAGCCAA               CAGGC CCAAT GCCTA               GCGCGACCTCGAGCC  45 94
JRI60_RS18330 4428018 .. 4428046 -  -3.7  -3.19157   GACGAAGTCCAGGAA        GGCGCGCACCT TGGCGGG AGGAAGGCGCC        GCGATGGAGAGAAGA  45 184
JRI60_RS18325 4427133 .. 4427160 -  -9.1  -2.78384   GCGCCTTCTACCAGA        CGAGCCTGGAG CTGATC CTCCGGGCTCA         GGGGGTTCAGACCCT  51 306
JRI60_RS18305 4423996 .. 4424053 - -14.7  -3.12351   GGGGCCGATATCGAA CCTGGCGATACGCCACCTCTCGCCGGA GCAC CCCGGCGAGAGGCGGCCGGTCACGAGC CTCACTCGGTCAGGC  76 27
JRI60_RS18285 4420054 .. 4420065 -  -4.4  -2.78384   TCGGGCGCGACCATA                TCAG AATC CTGA                 ACCCGGCGTGTTCCC  43 47
JRI60_RS18280 NONE
JRI60_RS18275 4418530 .. 4418545 -  -2.4  -3.31144   GCGCGAGTGCGAGAA              GCGCCG GCCT CATCGC               AGCCATCTCCACTCT  44 19
JRI60_RS18270 NONE
JRI60_RS18265 NONE
JRI60_RS18260 NONE
JRI60_RS18255 NONE
JRI60_RS18250 NONE
JRI60_RS18245 NONE
JRI60_RS18240 NONE
JRI60_RS18235 NONE
JRI60_RS18230 NONE
JRI60_RS18225 4407018 .. 4407040 -    -9  -3.14229   ACACCGCCAGCAACA           CCGGCAGCTG CCA CAGCGGCTGG           TTCTCCAGGTTCCAC  56 139
JRI60_RS18210 NONE
JRI60_RS18205 NONE
JRI60_RS18200 NONE
JRI60_RS18195 4397501 .. 4397538 - -17.1  -2.87931   CGCAGGTTCTAGAGA   CCCTCACCCCGTCCCTCT CCC AGAGGGAGAGGG-GAGGG   GGCTCGGTTACGGCT  82 64
JRI60_RS18160 4389587 .. 4389602 -  -6.1  -3.28712   CGCGGTGGTGGAGAA              CGGCA AGGTGG TGCCG               GGGAAGATCATGAAC  53 243
JRI60_RS18150 4387486 .. 4387530 - -22.1  -2.87931   CCGAGGCCCCAGATA CCCTCACCCCGACCCTCTCCC GGA GGGAGAGGGAGGGGATGGGGG ATGGGGGAGGGGGGA 100 52
JRI60_RS18140 NONE
JRI60_RS18135 4382813 .. 4382848 -  -3.9  -3.05596   CAGGGGTCCATCGAA   GGGGGGCGCCTGG-GGC ATCT ACCACCAGG-GTACCCC    GCCCGGCGAGGGGGA  44 70
JRI60_RS18130 4381973 .. 4381988 -  -4.6  -3.15427   AACACCCGGCATGAA              GAAGCG CTAC CGCTGC               ATCACCTGCTCGTAC  47 177
JRI60_RS18115 4380041 .. 4380075 -  -6.3  -4.06419   GCTGCCCAGAAAGAA    GGCGTCCGGCCCCG TCATCATC CGGGGCTCG-CGCC     GGTAGGCGGGCTCAG  66 37
JRI60_RS18105 4378207 .. 4378220 -  -2.4  -3.14344   GATGCTTCCCACCAA               TCAG TACTTC CTGA                GCCTGGACGCGGATG  44 187
JRI60_RS18095 4374407 .. 4374438 -  -2.8     -4.13   ACACAGAATCAGAAA      CCCACCACCGCGCAG CCT CCGC-CGGGGGCGAT      CCACCTGGAAGGGCT  59 364
JRI60_RS18085 4369364 .. 4369392 - -19.6  -3.33696   CGGCGTGGGAAGCAA        CGGGCCCGCTCC TGGGG GGAGCGGGCCCA        CCTTCACTCGTCACC 100 59
JRI60_RS18065 4363358 .. 4363371 -  -5.9  -3.41051   GCAGGTCTACCAGAA               CGGCG ATTT CACCG                GGACGATGTGGAAGT  51 122
JRI60_RS18050 4357094 .. 4357139 -  -2.8  -3.16783   GAGCGAAGTGAAAAT TTGA-GCCTTTCTCTATCGGC GAGTCAA GCCGAT-GAGAA-GGCGTCAC CGCGCGAAGCGGAAG  44 22
JRI60_RS18045 NONE
JRI60_RS18040 4353410 .. 4353438 - -24.7  -5.34309   AGGACGAAATAAAAA        GGGGAACCGCCCT TGA AGGGCGGTTCCCC        GGGAGTCCCATCAGG 100 50
JRI60_RS18035 4351385 .. 4351426 - -29.5  -4.59773   GCGGACCGCGAAAAA CCAACCGGCGCGGCCGCCA GGAG TGGCGACCGCGCCGGCCGG  AGACTTCCGTGCTGC 100 48
JRI60_RS18005 4345531 .. 4345555 -  -6.9  -2.70932   CTCCGCGGGGAAGCA          CCGTCGTGGCG CTT CGCTTCGCCGG          AGGCCACTGCCGCCG  48 45
JRI60_RS18000 NONE
JRI60_RS17995 4342103 .. 4342117 -  -5.6  -3.63627   CGGTGACAGTCGAAA               GACGCC CTG GACGCC               CGCCGGCGCGACGCT  57 177
JRI60_RS17970 NONE
JRI60_RS17965 4331319 .. 4331349 -  -5.3  -3.28712   CTTCCTGCTGGAGAA      CCTGCGCGCCCGCC ACCC GGCGT-CGCTCAAG       GTGGCCACCCTGCTG  51 206
JRI60_RS17945 NONE
       spoVG 4328564 .. 4328584 -  -6.1  -3.17075   CGTGCCGGAAGGGAA            GAGCCTTGA GCG CCAACGCTC            GGGCCGTGCTCAGTC  51 35
JRI60_RS17935 4327542 .. 4327558 -  -5.7  -3.12351   GGCGGCCAGAGTCAA              GCCACCC GGC GGGCGGG              AATGCCCTTCTCCGC  49 41
JRI60_RS17930 4326634 .. 4326671 - -12.7  -4.36914   CGCTCCTCCACAAAA   GGGACGGGGCTGGCCC TTTTTCC GGACCAGCCCCG-CGC   GTACGGCAGGAAAGA 100 46
JRI60_RS17925 4325967 .. 4326007 -  -9.6  -4.22883   GATGATGGAAAAGAA CACTTCCGC-CCCCCCGTG ACTT CCCGGAGGGCGGGGAAGGG  GCCTTCTACGGGGGG  80 53
        rpsF 4325335 .. 4325358 - -10.2  -2.50074   GTCCGTAGAAGACAC          CCGGGAAGGC TCAA GCCTCCTCGG           TGGCCTCCTCATCAG  56 12
JRI60_RS17915 NONE
JRI60_RS17910 4324366 .. 4324397 - -20.9  -3.27525   CTCCCGCAAATGCAA      GGGCCGCCCGGGA GTTGAT TCCCGGACGGCCC       TGGTACTTCACGGTC 100 101
        dnaB NONE
JRI60_RS17890 NONE
JRI60_RS17885 NONE
JRI60_RS17880 NONE
        clpB 4316408 .. 4316436 - -17.4  -3.61398   TTCCGTCGCGAAGAA        GCCCGGCGACCC TCACG GGGCCACCGGGC        TTCTCGCTTCAACAG  89 60
JRI60_RS17865 4313913 .. 4313923 -  -5.4  -3.31792   TCACCAGGGGGAGAA                 TCAC GAG GTGA                 CTCTCCGCCGGATAA  51 77
JRI60_RS17860 NONE
JRI60_RS17855 4311153 .. 4311169 -  -4.4  -3.57144   GCGCCGAGGGCGAAA              TCGCCA CGAGT TGACGA              GCCTGGTGGTGCGGC  52 137
JRI60_RS17840 4305506 .. 4305554 - -21.1  -3.17075   TTCCCGGTAACGGAA TGAGTCG-AGGGGCCGGCCCGG GAGCTG CCGGACCGGCCCCTTCAACTCC TCGCCGAGGCTCTAC 100 37
JRI60_RS17830 NONE
JRI60_RS17825 4298555 .. 4298569 -  -3.5  -3.61398   CGGCTCCTCGAAGAA               GAACG TGGAG CGCTC               GGGGCGAAGGTACCG  51 67
JRI60_RS17820 4298257 .. 4298271 -  -4.2  -3.53091   AGGCCGTCTCGCAAA               GCGC TGGCATG GCGC               ACGGGGCTCGTTACT  51 103
JRI60_RS17815 4295623 .. 4295655 - -13.3  -2.52896   GGACTCGCGAACGGA      CATCACGCCGCCTCC GAG AGCGGCGGCGTGTCG      GCATGGCGCGGGAAG  66 364
JRI60_RS17810 NONE
JRI60_RS17805 NONE
JRI60_RS17800 4292581 .. 4292600 -  -3.5  -3.21772   AACGGGGCTATAAGA            GCGCG GAGCCCTTGG CGCGC             GGGAACGTCACCTCA  47 33
JRI60_RS17795 NONE
JRI60_RS17790 4290994 .. 4291006 -  -6.2  -3.73775   CGGAGGGGGAGCAAA                CGGG ACAAG CCCG                GCGGTTCACATGGGT  59 83
JRI60_RS17770 4286815 .. 4286873 -  -5.1  -2.94695   TGAGCACGAAGGAGA CGGGGCACGGCCAGTCCGGGTGCCTGGTC GGC GAGCAGGTACGTGG--TGCCCAGGCCCCG GCCCGCTACGTCGCG  47 31
JRI60_RS17765 NONE
JRI60_RS17760 NONE
JRI60_RS17755 NONE
JRI60_RS17750 4281839 .. 4281864 -  -2.6  -2.62396   CACCTTGTTACAGCA         CCATAACGCCA CCTTC CGG-GTCATGG         AGCATCCGCCCGAGG  38 520
JRI60_RS17735 4274866 .. 4274882 -  -5.8  -3.36492   GTGGCAACTGGAGAA              CCGCAC TCTCG GTGCGA              GCCCTGTGGCGCTCA  53 240
JRI60_RS17725 4274124 .. 4274150 - -13.7  -3.53012   TCCTTCCGCCTGAAA         GTGTCCTCCCC CTCCC GGGGAGGACCC         GTCAGGAGGAACAAC  78 322
JRI60_RS17710 4272012 .. 4272036 - -11.3  -3.36273   GTTCCTGAAGATCAA          CCCCGCCGGCA AGC TGCCGGCGCTG          GTGGATGGCGAGACG  64 508
JRI60_RS17700 4270359 .. 4270391 - -20.6  -3.26947   GAACGGGGAGAGCAA      GGGACCGGCCAGGG AGAGA CCCTGGCCGGTCCT      TCTCGTTCGAGAACA 100 272
JRI60_RS17685 4266481 .. 4266509 - -10.1  -4.20696   GCAGGAAGCGCAAAA        CGCGCTGACTGGC GTA GCCAGGCCGCTCG        GACGGGTCGAGTCCA  85 509
JRI60_RS17670 4264413 .. 4264441 - -14.6  -4.19735   GTCCCCAAAAGCAAA       CCGCGCCCCCCTG CCAG CAGAGGG-CGCGG        CTCACAGCGGCGGGT  95 155
JRI60_RS17665 4262847 .. 4262860 -  -2.3  -4.09117   GCGATCTACAAAGAA               CTCCG CGAG CTGAG                CGAATCCATGCGCGG  60 316
JRI60_RS17655 NONE
JRI60_RS17650 NONE
JRI60_RS17645 4259496 .. 4259512 - -12.3  -2.67188   CCACACTACCAGAAT              CCAACCG CTC CGGTTGG              CTCGTGGGCGGGGAT  65 155
JRI60_RS17640 4257175 .. 4257211 -  -8.6  -3.23452   ACCTCCAGAATGTAA    GCAGGGCCGCGTCC AACTGCTCG GGACGCGACGCGGC    GGCGCTTGGCTCGGG  58 65
JRI60_RS17635 NONE
JRI60_RS17630 4254051 .. 4254062 -  -5.8  -3.75105   GCAATGTACGAACAA                GCCA AGCT TGGC                 AAACCATAACCGACT  57 297
        istA 4250219 .. 4250237 -  -2.3  -2.87132   CCCCCGGGGCAGAGA             GCTCGAG GACTG CCCGAGG             GGGAGGAAGACTCTC  40 44
        istB 4249245 .. 4249255 -  -2.4  -3.83026   CCCCTCGATAGGAAA                 GGGC GCG GCTC                 AAAACGGCGGGTTGT  54 149
JRI60_RS17600 4246749 .. 4246783 - -22.9  -3.40403   GTCTCGGTAGGAGAA     TCGGTGCGCCGCGTG TTTCG CGCGCGGCGCACCGA     AAGACGCGCAGGCGC 100 383
JRI60_RS17580 NONE
JRI60_RS17575 4239657 .. 4239684 -   -12  -4.87291   GAGGGCAAGGAAAAA        GCCCAGAAACCC CTCG GGATTGCTGGGC         TTCTCTTGTGGAGGC 100 85
JRI60_RS17570 4238775 .. 4238792 -  -3.3  -3.14211   ACGGTGGGCTACCAA             TGGCTCG GTGG CGGACCA              CGGAACGGGTCGTGA  45 204
JRI60_RS17555 NONE
JRI60_RS17550 4235449 .. 4235461 -  -5.5  -4.07568   GTGTGCGGTGCAAAA                GGCGA TTA TCACC                GAATCGCGCAAAACG  64 132
JRI60_RS17545 4234628 .. 4234645 - -14.1  -5.14563   CCTCTCATGAAAAAA             GCGCGGC AAAG GCCGCGC              CGTCCAAGCATGATG 100 98
JRI60_RS17540 4234293 .. 4234320 -    -4  -3.14931   GGCAGCGGTCAGCAA        GCGGCACG-GCGC ACA GCCCGCGTGGCAC        CCGGCAGCAGCCCTC  45 90
JRI60_RS17535 4234055 .. 4234080 -  -6.9  -3.48807   GCATGAAATCGACAA         GCGC-GCGAAAA GAA TTTTCGCTGCGA         TGGCGCTCACGAGAC  58 32
JRI60_RS17530 4233527 .. 4233567 - -19.2  -2.72991   CGACACCGTGAACTA CGGGCTGCTCAGGCGCT-AC TGG GCGAGCG-CTGAGCAGCCCG GCCGGCCGCATCAGG  93 36
JRI60_RS17525 4231899 .. 4231921 - -13.4  -3.72576   TTGCTCTGCATGAAA           GCGGCGGG AATCGAA CCCGCCGC           CTGGGACTTCCAGAG  79 471
JRI60_RS17520 4229703 .. 4229729 -  -5.6  -3.04144   CCGCCATGGCCAAGA         GGCCAGGGCCCA TGC CGCGCCCGGGCA         CCTATACGCTGTCGG  47 43
JRI60_RS17515 NONE
JRI60_RS17510 4227334 .. 4227344 -  -3.2  -4.07568   TTTTCCCTCTGAAAA                 TAGG GTG CCCA                 TCTGTCCGGGCGAGT  59 278
JRI60_RS17470 4217104 .. 4217121 -  -2.6  -2.63631   GGAATCGCTATACGA             CGTTCG ACCTCG CGCACG              AGCTGGGCCAGGAGG  38 89
JRI60_RS17460 NONE
JRI60_RS17455 4212295 .. 4212315 - -10.3  -3.42996   CAGCATGCAGCAGAA            GCACGCGCG CAC CGCGGGCGC            GGTGGAGCAGGTGGC  64 500
JRI60_RS17420 NONE
JRI60_RS17415 NONE
JRI60_RS17410 4204092 .. 4204108 -  -7.9  -2.64616   GGTGCACCCAGACGA              GGGCTCG ACG CGAGGCC              TGACGAAGGCTCGAT  50 106
JRI60_RS17400 4202186 .. 4202229 -  -5.3  -2.80016   GGTGACGATCAACCA GGGCGTCACGCTTCCGG-CGAC CCT GCCGGCCGGCAGC-T-ATGCCC TCCTGCTGAACCTTC  44 175
JRI60_RS17370 NONE
JRI60_RS17365 4188689 .. 4188703 -  -2.8  -3.14321   AGGAAAGCCGAAAAT               TCTCGA AAA TGGAGA               GTTCTTGATAAACCG  44 82
JRI60_RS17360 4186643 .. 4186655 -  -4.7  -3.14132   GCTGCTCTCCAGCAA                CCGCC GGA GGCTG                TCCGACTGGCTGCAC  47 345
JRI60_RS17310 NONE
JRI60_RS17305 4175510 .. 4175537 -  -2.6  -3.66018   GGACGAGTCCAAGAA        GCCCGCGGCCTGA AGC TCA-GCCGTGCAC        CACGCGCTTGACGCC  51 14
JRI60_RS17285 4171516 .. 4171526 -  -5.4  -3.53811   CTGACCGCGCTGAAA                 GGTT TCA AACC                 GGCTTGCGTGCGGTG  54 19
JRI60_RS17280 NONE
JRI60_RS17275 NONE
JRI60_RS17270 4168414 .. 4168427 -  -2.3  -2.52464   GCGCGCCTCAACGGA               CAGCC GGTG GACCG                GTATGACTACGTGGC  38 435
JRI60_RS17235 NONE
JRI60_RS17230 4161568 .. 4161579 -  -3.6  -2.95116   GGATTATCGAAAGTA                CCCC CGCC GGAG                 TTTCCTGGGAATGTT  44 73
JRI60_RS17225 4161033 .. 4161072 - -16.4  -2.71364   CGACGCGCTGAAGCA  GGGGAGCGCCTCCGTCAT GGAG ACAGCGGAGGCGCTTCCC   ATCAGTACCGCGTGT  77 27
JRI60_RS17215 NONE
JRI60_RS17210 NONE
        mdoH 4155329 .. 4155345 -  -2.1  -3.24925   ACGCGAGATGATGAA              GGAGCTC CTG GAGGACC              TGGGGCACGAGGTGG  44 334
JRI60_RS17195 4150311 .. 4150326 -  -3.2   -3.0894   CAACCAGCGATTCAA              CTCCCT GGTG AGGCAG               GCGCCAGGAGGCACG  43 519
JRI60_RS17180 4146740 .. 4146758 -  -4.4  -3.14132   TCGTGTGCTGATGAA             CGCTACCT TCC AGGGTGCG             CATCCGCTCACTGCG  47 101
JRI60_RS17175 4146226 .. 4146240 -  -5.6   -3.2981   GATAGCAAGCAGCAA               CCCCCC TCC GGGAAG               ATCCGTCTATCCAGA  51 69
JRI60_RS17170 NONE
JRI60_RS17160 4140469 .. 4140479 -  -3.2  -3.70751   CAAGAACCTGAAGAA                 GCTC GCC AAGC                 GCCGTGGTCAGGGAA  53 291
JRI60_RS17150 NONE
JRI60_RS17145 4137614 .. 4137633 -  -2.8  -3.71649   GTCCGAAACCTGAAA            CAGAACGT TCAA ACAGTCTG             ATCAAGTTGAACGTT  53 104
JRI60_RS17140 4136511 .. 4136548 -  -5.6  -3.37533   CTCGAAAATGATGAA  CCCCGG-CGCCTTGCCC TCTCGTT GGGC--GGCGGCCAGGG  TCCTCGCATCCGCGC  53 168
JRI60_RS17135 4134489 .. 4134505 -  -3.6  -3.02511   TCCACGGTGGGAACA              GCGGGT CGTAT ACCCTC              ACCCCGACCCTCTCC  44 94
JRI60_RS17125 NONE
JRI60_RS17120 NONE
JRI60_RS17115 4127427 .. 4127440 -  -4.5   -3.9461   GCTGGCGAAGAACAA               CCTCA AGGT CGAGG                ACATCGACGTCTTCG  61 285
JRI60_RS17100 4122116 .. 4122143 - -13.5  -5.61881   CCGGAAAAACAAAAA        GGCTCCAGGTT TCTTGG AACCCGGAGCC         CTGAAGATTGGAGCG 100 56
JRI60_RS17095 4120774 .. 4120792 -    -3  -2.76964   CGATACTCAAGAGTA             CCGTGCGT AGG AAGAACGG             GGCTGCGGTGCGTCT  40 198
JRI60_RS17090 NONE
JRI60_RS17085 4118550 .. 4118560 -  -2.4  -3.90328   GACAACCCTCATAAA                 TCGC CTC GCGG                 GCCCAATTGGCCCTG  56 8
JRI60_RS17065 4115753 .. 4115778 -  -3.9  -2.90075   TGCGTGTGAATGACA         GTCGCGACCGA GCCA TCGACCGGAAC          GTGTTCCTGCCGTAC  42 471
JRI60_RS17050 4114263 .. 4114286 -  -4.4   -3.0464   AACTGATCGTCAACA          CCGCCGAGGT CGCG ATCGCGGCAG           CGGTTGCCGGGCGAG  45 270
JRI60_RS17040 4112799 .. 4112819 - -10.3  -3.14132   CGTTCGTGGGACCAA            CCCGGCAGC GGT GCCGCGGGG            GCGTTCGGTGGGGTG  62 67
JRI60_RS17035 NONE
JRI60_RS17030 4110980 .. 4110996 -    -5  -3.92641   AAGCCCATCGACAAA              GCCCCG GAAAG CGGGGT              GAGCGAGCTGTCCGG  61 319
JRI60_RS17015 4106767 .. 4106782 -  -2.4  -4.08216   GTAGCGCCGTGAAAA              CCAGCC ACAC GGCAAG               ACTCGCACCCAATCC  58 235
JRI60_RS17010 NONE
JRI60_RS17005 4103589 .. 4103607 -  -3.7  -3.14132   GGCTCCCGTGAGCAA             GGAGGCC CTGCT GGCGCCC             ACCTGTACCCTCGTG  45 410
JRI60_RS16980 4097118 .. 4097152 -   -12  -3.35046   CGAGCGGGCGAAACA     GCAGTTCCTGCCCGCG CTG CGCATGCTGGAACAGC     GGCTCACGGGCCGCG  67 230
JRI60_RS16970 4096085 .. 4096100 -  -4.6  -3.14132   CGTGTGGGGGACCAA              GGTGGC CGGC GCCACA               TGGGCCCGCGCGCGG  47 192
JRI60_RS16960 4094595 .. 4094618 -  -8.8  -4.31397   AGGCCGAGAAAAGAA          GCGG-GCTCCC GCG GCGAGCGCCGC          CTGGGTGGGGCGCTC  79 58
JRI60_RS16955 4092474 .. 4092520 - -20.9  -3.21416   GATGGCCACCATGAA GCCTCCCGCGGCGAGCG-CCGCC TGA GCCGGGCGCTCGC-GCGGGAGGT TCCCACCTGGGCTAC 100 37
JRI60_RS16945 4089984 .. 4089996 -  -2.6  -3.18582   GAGGTGACGCATCAA                CCGG ATGAA CCAG                GGGAAGGATGACATG  42 88
JRI60_RS16940 NONE
JRI60_RS16935 4086710 .. 4086737 - -19.8  -3.51329   GAGTTCCAATGAGAA        GGGCCCCGTGCG GAAT CGCGCGGGGCCC         TTTTCTTTTACGAGC 100 66
        nadA 4076814 .. 4076862 -  -7.4  -3.54741   CACGATGGCTCCAAA TCG-CACCGCGCCGTCTTCGGTGC AAG ACAC-GAATACGGCGCTGCGGCGG AATTGCCGCTCTCGC  60 67
JRI60_RS16900 4076158 .. 4076178 - -16.9  -3.10796   GCCCACCAGGCAACA            CCCTCTCCC TTC GGGAGAGGG            CCGGGGTGAGGGTAC  84 67
JRI60_RS16895 4075185 .. 4075202 -  -8.4  -3.63515   CTGCACCTGCAAGAA             GGGCAC GTGCGA GTGCCC              CAAGTGCAAGAAGCG  64 124
JRI60_RS16885 4073114 .. 4073124 -  -2.4  -2.56095   TCGACATGTAATGCA                 CCCG GCG CGGC                 ACGGTGAGGCCGAAG  38 96
JRI60_RS16880 4071376 .. 4071389 -  -5.2  -3.65522   CATCGAGCGCAACAA               GGCG TACATC CGCC                GCATGTCTCCGGCGC  57 478
JRI60_RS16860 NONE
JRI60_RS16855 NONE
JRI60_RS16850 4064968 .. 4064985 -  -6.9  -3.05384   GTCGGGGTGAGGGAA             GTCGCTC CCGT GAGCGCC              CCTCGCCCTTTTCTT  51 53
        moeB NONE
JRI60_RS16835 4062437 .. 4062450 -  -3.1   -3.7941   CATCCTGGAGAACAA               GGA-GC AGG GCATCC               ACGAGGAGATCGAGG  56 331
JRI60_RS16825 4059465 .. 4059481 -  -2.2  -3.53012   TCTCCGCGTCCGAAA             GCCACCG ACAC CAG-GGC              GTTGCTCCGCCGTCA  48 87
JRI60_RS16820 NONE
JRI60_RS16815 NONE
         tmk NONE
JRI60_RS16805 NONE
JRI60_RS16800 4054326 .. 4054357 - -15.8  -2.75183   ACGGCGAGCGAACGA      GGGGCTGGCTGGGC GTCG GTCCAGGCAGCCCC       ATCCCAGTGCGTGAC  75 45
JRI60_RS16795 4052733 .. 4052772 -  -7.7  -3.50853   GGCGCTCAATGACAA  GGGTGGAGGCGCCCCGGA GCGTT TCCAGGGCGCC-CGTGCC  TTCTCCCCCGGTCTC  60 45
JRI60_RS16790 4051211 .. 4051248 - -10.4  -2.88663   ATGGACGGGGAGACA   TCCTCCCACGGGGCGG ACCGGG CCGCCCCGGGTGGAGA    CGCTACTTCGCGCGC  59 28
JRI60_RS16785 NONE
JRI60_RS16780 4047883 .. 4047896 -  -3.7   -2.6891   CATCACAGGAGACGA               GGGGC GCGA GGCCC                AGGAGGAGCAGCAGA  41 102
JRI60_RS16775 4047540 .. 4047566 -  -3.6  -3.07291   AAGCAGCCGACCGAA         GGGGCTCAAG GGTGGAG CTGGAGCCGC         ACCGTGGAGGGCTCG  44 4
JRI60_RS16770 NONE
JRI60_RS16765 4045637 .. 4045681 - -10.8  -2.75528   ACGGCCAAGAGAGGA GACCTCTTCCGGGTCACCCTGA AGG TC-GAG-GACCCGGAAGGTGTC AGCATGCTCTCGCTG  57 334
JRI60_RS16750 NONE
JRI60_RS16745 NONE
JRI60_RS16740 4042193 .. 4042217 -  -6.4  -2.73364   GCCGCACCGCAAGGA         GGCGTTCCTCG GGTG CGAGCA-CGCC          ATCGAGCGGCTCAAG  46 135
JRI60_RS16710 NONE
JRI60_RS16705 4033900 .. 4033947 - -10.4  -3.03441   CATGAGTCCGGAAGA GGTGGCCGCGCGCATGGCCTCCG AGC CGGAGGCGCT-CGCGCTGGGACC CGCCCTGACCGATTA  60 292
JRI60_RS16670 NONE
JRI60_RS16665 4025082 .. 4025093 -  -3.6   -3.4072   CACCGGCGAGGACAA                CGGG GACG CCCA                 CCTCAAGTCCCTCCT  47 183
JRI60_RS16655 4023511 .. 4023523 -  -3.3  -2.88249   GAGAGGGGGCATACA                CGGGT TCA ACCTG                GGGCCCGCGTACCCT  41 73
JRI60_RS16645 4020572 .. 4020592 -  -6.7  -3.03124   CCTGAGGGTGGAACA            GGGGGACGG ATA CCCTCACCC            TAGCCCTCTCCCAGG  51 63
        yjjX 4019653 .. 4019664 -  -2.2  -2.79796   CCCCACTTCATGACA                GCTGG TCT CC-GC                CTCGCGAACGCCGCC  39 351
JRI60_RS16610 NONE
JRI60_RS16605 NONE
        nrfD NONE
JRI60_RS16595 4011627 .. 4011645 -  -5.8  -3.35996   CAGCTTCACGTACAA             GGGGACGC CGA GCGGCTCC             GCCGCCGTCGTCGTG  51 314
        cglD 4003727 .. 4003748 -  -6.5  -2.94099   CTTGTTCATGACAGA           GGGCTCCTTG CGG CGAGG-GCCC           CACTGTCCACGTCCG  48 79
JRI60_RS16550 NONE
        purE NONE
        purK NONE
        ybaK 3999727 .. 3999756 -  -4.2  -3.28924   CATTCCCGCGGACAA       CCCCGC-GCACGT CTCGC ACCTGCTGCGCGG       CAAGCCCGCGCCGCT  49 363
JRI60_RS16485 NONE
JRI60_RS16480 3986301 .. 3986317 -  -3.5  -3.28712   GTGGTGCTTCGACAA              CGGGGCG TAC CGGCCGG              AGCTGTGCCGGGCGC  47 298
JRI60_RS16470 3983567 .. 3983589 -  -5.6  -3.68569   CGAGGGATGGAACAA          GCAGCA-GC TCAAGG GCGTGCTGC           TGGGCCAGGTGCTGC  57 287
JRI60_RS16450 NONE
JRI60_RS16445 3977538 .. 3977550 - -10.5  -3.14132   CTGCTCGTTCACGAA                GGCGG AAG CCGCC                ATCTGAGCGCATGAG  62 89
JRI60_RS16435 NONE
JRI60_RS16430 3974666 .. 3974708 -  -3.9  -3.62775   ATCATTCCGGAATAA GCCAGGCCGTC-CGGAGCAG GAGT CAGGGCCGCGACGGCGTGGG ACAAAATGTCAGCGG  54 65
JRI60_RS16425 NONE
        gspD NONE
        gspE 3969230 .. 3969270 - -14.1  -4.25104   GCTCGCGCAGTAAAA CCACACCCCGCGCCACTCCC TTCC GGGAG-GGC-CGGGGCG-GG TGTGCTTTAGAGATC  91 32
        gspF NONE
JRI60_RS16405 NONE
        gspG NONE
JRI60_RS16395 NONE
JRI60_RS16390 NONE
JRI60_RS16385 3965281 .. 3965301 -  -5.3  -2.53382   ATCAGCGTGAAGCCA            CGCATCGAG CGC CTCATCGCG            TCACTCCTCCGCCGG  44 18
JRI60_RS16380 NONE
JRI60_RS16375 NONE
        pilM NONE
JRI60_RS16365 NONE
        gspN 3960076 .. 3960132 - -9.99999  -4.15044   GGCTTGTTGAAGAAA CTTTCGC-A-GCTCCGGGCCCGGACCGG TTT CCAGTCCGGGCCGGGTGCCTAGCGCATC TGCGGGCGCGGCGGA  78 16
JRI60_RS16350 3957588 .. 3957602 -  -2.8   -2.9138   GACGAAAGAACACCA               GCTC TGGCATC GAGC               CTCCCTGAAAAGTCG  41 94
JRI60_RS16345 3955943 .. 3955956 -  -5.9  -3.53012   TGGCGCCGCCCGAAA               CCGGA TTTC CCCGG                CTCGGGGTGCTACTC  56 35
JRI60_RS16340 3954976 .. 3954998 -    -4  -3.61398   GCCCCTGGCCAACAA           GTGGGAGGGC GGC ACCCTCAAAC           TGGTGCCCGGGAAGA  55 367
JRI60_RS16325 3951023 .. 3951033 -  -2.4  -3.29471   CGGCGACCACACCAA                 CGGG CTG CCGG                 AATTGCTCTCGCGTC  45 453
JRI60_RS16315 3949527 .. 3949553 -  -9.3  -3.06183   CGTATCCCTATGGAA         CGCGGGGCGCG GCTCG CGCACTCCGCA         CCCGGCCCAGCAAAT  57 481
JRI60_RS16310 NONE
JRI60_RS16305 NONE
JRI60_RS16300 3943629 .. 3943639 -  -2.4  -3.19425   AAGGAACGCTACCAA                 CCGG CGC CGGG                 GTTCCCCAGCCGTGG  42 8
JRI60_RS16295 3942321 .. 3942335 -  -4.2  -2.66787   GCAACAGGGAGAGGA               GGGC ACGCATG GCCC               TCGGACTCTAGGCCC  40 68
        sppA 3939671 .. 3939710 -  -6.2  -3.48593   GACTGTGGGACAGAA  GC-CCGGCGCGGGGTCCTC GGG AAGGCCCTCGCGTTGGCGC  GAGCCACCCGCCGAC  55 162
         rho 3937961 .. 3937979 -    -3  -3.28712   CTGGTGGGCCGAGAA             CGGTTCCA TGA TGGAGCTG             GCCCGGCCCCGGCAA  47 116
JRI60_RS16275 NONE
JRI60_RS16270 NONE
JRI60_RS16265 NONE
JRI60_RS16260 3929258 .. 3929289 -  -2.1  -3.53012   CTCTCTTTGGTGAAA      GGAGCGGTGGCCA GGCTGA TGGCGACGACGCC       GAGCGCGATGAGCCC  48 138
JRI60_RS16255 3928689 .. 3928703 -  -2.7  -2.84878   CCTTTCAATGCAAAG               TGGGC GCCAT GCCCT               TTCAGAGGGCTTTTC  41 113
JRI60_RS16250 3927960 .. 3927996 -  -5.8  -3.61398   CGTCCTGCCCAAGAA    GTACTCGGCCACCCTG TACAG CGGGATGACCAACTAC    CTGAAGGTGGGCCTG  57 126
JRI60_RS16235 3924272 .. 3924287 -  -3.9  -3.28712   CCGCTCGCCCGAGAA              CGCGC GCATCT ACGCG               GAGACCGGCGCCCGG  47 129
JRI60_RS16205 3915910 .. 3915926 -  -3.5  -3.07291   AAGTATTCCACCGAA              GGCGGGG GCG CGCAGCC              TGGCGGGTCTCGGCG  44 106
JRI60_RS16200 NONE
JRI60_RS16195 NONE
JRI60_RS16190 3911050 .. 3911062 -  -4.7  -2.59564   CGCCCACTCTACAAC                GGGGC CCT GTCCC                TGGCGGGGACGATCA  42 38
JRI60_RS16185 3910112 .. 3910126 -  -2.7  -2.84602   TGCAGCCTACGAAAT               CCCGG GCCGA CCGTG               CCAGCGGGTCGGAGA  41 41
JRI60_RS16180 NONE
JRI60_RS16175 NONE
JRI60_RS16170 NONE
JRI60_RS16165 NONE
JRI60_RS16160 3904298 .. 3904321 -  -7.4  -2.72661   CACGAGGGCGAATGA          GCCTGTCCTGG CGT CAAGGAC-GGC          TCGGAGCCCATGGTC  51 59
JRI60_RS16155 NONE
JRI60_RS16150 3902304 .. 3902323 -  -2.8   -2.6914   TAGGGCCTACAGAAC            GC-CGCGTG TCT CACACATGC            TCATGTCCTCTTCAG  40 50
JRI60_RS16060 NONE
JRI60_RS16055 NONE
JRI60_RS16050 NONE
JRI60_RS16040 NONE
JRI60_RS16035 3863578 .. 3863632 - -20.6  -2.77182   CTGGAGAGTCAAGCA CGGAGGGCTGGCGCTGGCGGGCGA CGGACTC TCGCCCGCGAGCGCCCGCTCCCCT GCTTGCCATTGGCTG  95 78
JRI60_RS16030 3862464 .. 3862476 -  -7.7  -3.31144   GGTCGAGGCCGACAA                CGTGA TGC TCACG                GAGCACGTGCGCTCC  55 472
JRI60_RS16020 3860086 .. 3860113 -   -17  -4.19735   GCCGTGAAAACGAAA        GGAGCGACCCCC TTTC GGGAGCCGCTCC         TCGATGGACCCATCC 100 65
JRI60_RS15885 3839557 .. 3839587 - -13.9  -3.15407   CATACCATGAAGAGA       TGCTCGCGGCACC GGAGG GGGGCCGCGAGCG       AGAGGAGGTTGCCCG  73 76
JRI60_RS15880 NONE
JRI60_RS15875 NONE
JRI60_RS15870 NONE
JRI60_RS15865 NONE
JRI60_RS15860 NONE
JRI60_RS15855 NONE
JRI60_RS15850 3831466 .. 3831489 -  -2.2  -2.57344   GAGCTGGCGCAGAAG          CTGGGCATCC TCAC GGTGGCCGAG           GGAATCGAGACCCCG  38 138
JRI60_RS15835 3825242 .. 3825274 - -20.6  -2.52464   GGTGCCTCCAAGTGA      CGACGCCCGGGCAC GACGT GTGCCCGGGCGTCT      CATCCACCCAACGGT  95 106
JRI60_RS15830 NONE
JRI60_RS15825 3823820 .. 3823832 -  -4.7  -2.66316   CGCTCCATCACAGGA                CTCCC TTG GGGGG                AAGGAGGCGGATCTC  42 5
JRI60_RS15820 3822989 .. 3823030 - -16.5  -3.14931   CGCATTCCGCACGAA GGCGGCCCCCTGGCGCGG GCCAACG CCGCGCT-GGTGGCCGCC CAGTCCTAGAACGAG  81 31
JRI60_RS15810 3820897 .. 3820913 -  -6.5  -3.14564   CGAGCTGCCCACGAA              GGACCTG GAG CAGGTGC              GGGGTGGCCGCGAGA  51 269
JRI60_RS15780 NONE
JRI60_RS15765 3808868 .. 3808904 - -13.8  -3.05384   TCGCGCCGGACGGAA   GAGCGGCT-G-CGTCCTC GTG GTGGACGACGAGCCGCTC   GTCGGAGCCTCGGCG  69 347
JRI60_RS15755 NONE
JRI60_RS15750 NONE
JRI60_RS15745 3802886 .. 3802924 - -22.5  -3.04461   TAGTCACCCGGAAGA  CGACCGGCGCGGCTGCCA GGAC TGGCCGCCGCGCCGGT-G   TGGGGGGATGGGGAG 100 42
JRI60_RS15730 3794660 .. 3794671 -  -4.4  -3.53444   CGAGGCCCCGGGAAA                TCGA CACG TCGA                 TGATTTTTTCCGCCA  52 119
JRI60_RS15725 3793812 .. 3793826 -  -4.2  -3.21276   CGCTCCTCCAGAAGA               CGTACA AGA TGGACG               CGCGCTGGAAGGAAC  47 215
JRI60_RS15715 NONE
JRI60_RS15710 3791584 .. 3791608 - -15.7  -2.61216   TGAGGAATCAAGTTA          GACCCTCTCCC CCT GGGAGAGGGAC          GGGGTGAGGGTATGG  74 93
JRI60_RS15700 3788675 .. 3788709 - -19.4  -4.07568   CCGGGCCCGGGAAAA     TAAAGAAGGCGCCCCC GGG GGAGGCGCCTCCTTCA     ACAGCCTGGAATTGT 100 60
JRI60_RS15695 NONE
JRI60_RS15690 3785091 .. 3785121 -  -4.6   -2.8805   AGTAGGGGCGAGATA       CCCTCACCCCGA CCCTCTC CCGGAGGGAGAG       GGGGTGTTTCACACA  44 58
JRI60_RS15685 3783367 .. 3783381 -  -7.8  -3.14132   GCGCTCCGCCATGAA               GCGCAA CCC TCGCGC               AGCAACGGCTGGCTG  54 89
JRI60_RS15675 3781417 .. 3781462 -  -7.3  -3.44284   CGGCCATCAAGAACA CCGCTCGGGGTGACAACGCGG GCGC CCGTGCCGACACCGCCATCGG CAACGAGGGCAAGGA  58 388
JRI60_RS15640 3774793 .. 3774826 -  -3.9  -2.70932   GGCGCTCGCGAACGA     GGCGCGCCTCCA GGGCCGCTGGG TGGAGGCA-GCC     AGCGGGCTCGTCGCC  40 84
JRI60_RS15625 3771780 .. 3771790 -  -8.2  -3.28447   GCACCTACGAGAAGA                 CCGG TGC CCGG                 AGCGCGGTGCTGCGC  58 202
JRI60_RS15610 NONE
JRI60_RS15605 NONE
JRI60_RS15600 3768385 .. 3768403 -  -8.8  -2.66316   CCGGGGAGGACATCA             CCCTGGTG TCG CACCAGGC             CACGCGCAAGCTGCT  50 246
JRI60_RS15590 3766363 .. 3766401 -  -9.5  -3.39505   ATTCGAGATGTACAA  CCAGGGCA-TCCACGCCC GCTC GGGCGTGGCCTGCGCCGA   CTGCCACATGGCCTA  61 470
JRI60_RS15570 3760824 .. 3760863 - -10.6  -3.30124   TCCCATCGTCCAGAA  GGAGCGCAC-CGTGCCG CCGGCAC CGGCCCGTGAGCGCCCC  GGACAGGCGAAGCCC  64 489
JRI60_RS15500 NONE
JRI60_RS15495 NONE
JRI60_RS15490 3730126 .. 3730144 -  -7.3  -3.01791   ACGTGGGCCTCAACA             CGGGCCG GGTGG CGGCCGG             CAACATCGGCTCCGA  52 279
JRI60_RS15465 3723375 .. 3723390 -  -6.1  -3.28712   CCGCGTCCTTGAGAA              TGCGC ACCGAG GCGCA               GGAAGGGGTCTGAGA  53 287
JRI60_RS15460 NONE
JRI60_RS15440 NONE
JRI60_RS15435 NONE
        cysK 3717089 .. 3717133 - -14.9  -2.61264   GTGGGCATGGAGAAC GTCGCGGCCCGCATCCGCGAG CTC CTCGCATACGCGGACCGGGAA CTGCGCGCCATCGGG  68 331
JRI60_RS15420 3715232 .. 3715242 -  -8.2  -3.29144   CGAGCCGCTGGACAA                 CGGC ATG GCCG                 TGCGGGACGAGGCGG  58 259
JRI60_RS15400 3711225 .. 3711258 -  -6.6  -2.57013   CGGGAATGGAATGGA     GCCGCGCGGC-TCAG CCCGT CTGCCGCCAGGCGGC     GAGCGCGAACAACAC  46 2
JRI60_RS15395 NONE
JRI60_RS15390 3710120 .. 3710133 -  -8.1   -3.4252   CCCGATGGACGACAA               TCCGC GTCG GCGGA                TGTCGGATGGCGGAT  59 78
JRI60_RS15385 NONE
JRI60_RS15380 NONE
JRI60_RS15375 3699753 .. 3699767 -  -3.5  -2.87132   TGTCCTCCGGACATA               TGGAC TGGAG GCCCA               GGCGGTTGCCGCGAT  43 513
JRI60_RS15360 3696926 .. 3696947 -  -6.5  -2.85351   TCCTTGGATAGCACA           GCGAGCGTCC CGA GG-CGCTCGT           CAGGCGCGCGGAAGC  48 25
JRI60_RS15355 3696202 .. 3696217 -    -6  -3.20573   GCACGCACACGAAGA              GGACGC GTCG GCGGCC               GGTCCGGCGTGAGGC  51 113
JRI60_RS15345 3694576 .. 3694609 -  -8.1  -3.32066   AAGAAGCGGGCACAA     TCCCCACCCCTGACA GGAA TGTCAGAGGGGATGA      ACGGGAAATCCCAAC  56 517
JRI60_RS15335 NONE
JRI60_RS15330 3691376 .. 3691403 -    -9  -2.71011   AGGGGGCCGGAATCA        CCCCGGAGCGCG GGGC CACGGTCCTGGG         CGAGACATCCAAGGC  55 80
JRI60_RS15325 NONE
JRI60_RS15320 3688617 .. 3688654 -  -7.5  -3.42621   AAGGGTAACCGAGAA   GGGGAGCGACCGGGCCA CGAA CGGCCCGGTCCCTCGGT    AGCCCCCCAAGACAC  59 54
JRI60_RS15315 3687376 .. 3687386 -  -2.4  -3.53091   ATGGGCTCGCGCAAA                 GGTG ATG CTCC                 CTCGCGGGGCGGCAA  48 86
JRI60_RS15310 3686776 .. 3686792 -  -3.5  -3.14132   CGCGCGGTTGATGAA              GCTGCGC GCG GCGCCGG              GCGAGGTGGAGCTGC  45 143
JRI60_RS15300 3683954 .. 3683979 -  -8.2   -3.7732   GCCGGAGAGCAAGAA         GTCCCGCGGCC ACTGA GGCC-CGGGGC         CTGGGTGGGTGGGGC  68 49
JRI60_RS15260 3675277 .. 3675299 -    -4  -2.91681   CGTCAAGGTGAGACA           CTGCGTGTAA TAA CTCCACGCGG           CCAGGATGAAGACTC  43 133
JRI60_RS15255 3673898 .. 3673912 -  -8.5  -2.62184   GGCGGGGTCAGACGA               GCCCG GAGAG CGGGC               CACTGGCCTTGGTGA  52 3
JRI60_RS15250 3671488 .. 3671528 -  -8.9  -2.82516   GGCGCGAGGAGGACA  TGGGGCTCGCGCCTCCC TATCGGC AGGAGGCGCGAGGTTCA  AGCGTGGTGAGCGGT  54 40
JRI60_RS15245 3669056 .. 3669087 - -12.3  -2.71144   CATCCTCGGCAACCA      CGAGCACTGGCGGG GCCTG CCCGCC-GTCCTCG      AGGCGTACGCGGCGA  60 501
JRI60_RS15235 3667611 .. 3667622 -  -5.8  -2.87468   GCCGAGGATACTAGA                GAGG CTCC CCTC                 CGAGGGGGTTCTCCG  46 9
JRI60_RS15230 NONE
JRI60_RS15225 NONE
JRI60_RS15220 NONE
JRI60_RS15215 3664449 .. 3664467 -    -3  -3.06831   CGAAGGCGGAGCCAA             CGGCGC AGGTATA GCGCGG             ATGGCTCGGGTCTTG  42 201
JRI60_RS15210 NONE
JRI60_RS15190 3659727 .. 3659743 -  -5.8  -2.60079   CGAGTCCACAATCCA             CCGG-GG CCCT CCTCCGG              GATGCCGTCGAGGCG  43 471
JRI60_RS15180 NONE
JRI60_RS15175 NONE
JRI60_RS15170 3654219 .. 3654261 -  -5.4  -3.31144   CGCGCAGCTCGAGAA GCGCGGGCACTGGCGTCCA CCTTTC TGG-CGCCGGCCCCGGCAC GTGTGAGGCGCTCAG  51 37
JRI60_RS15160 3652164 .. 3652214 - -12.4  -4.05788   TGTCGCGAAAGGAAA TGGGGCGG-AGGGGTCCGCGGGC GCGCCG GCCCACGGACCCCGGCCGGGCCT TGGTGGCCCGGGGAG  83 44
JRI60_RS15155 NONE
JRI60_RS15150 3650504 .. 3650542 - -19.5  -2.71712   TTCCTCGCGGGAAAT   GGCACCGGGGCGGCCTC GGAAG GAGGCCGCCCCGGCTCG   CGGGCACTCGCCCGC  93 55
JRI60_RS15145 NONE
JRI60_RS15130 3644853 .. 3644866 -  -3.1  -2.65264   GCACGAGGGAGATCA               GCGCGT CTG ACG-GC               GGTCGCTCCCGCCCT  39 45
        lepB NONE
JRI60_RS15115 3642340 .. 3642359 -  -9.2  -3.28712   CGCCCGGGCCCAGAA            GGAGGTGC TCCA GCACCACC             TGGGCAAGCTCGCCC  58 137
JRI60_RS15100 3639802 .. 3639812 -  -2.4  -3.14564   CTACGCTCCCAGGAA                 GGTG GGT CTCC                 CCGCGATGCACGGGA  42 171
JRI60_RS15095 3637586 .. 3637600 -  -5.7  -3.01712   TCGCGGTGGGCAATA               TCGAC AACGA GTCGA               GCGGACTGGACACCT  47 184
JRI60_RS15070 3631774 .. 3631795 -  -5.1   -3.1082   GACTGACTCAAGACA           GCTCCTTAC GGTC GTACGAAGC            GGGGGGGCGCGCAGC  49 95
JRI60_RS15065 3630635 .. 3630678 -  -4.6  -3.13403   CTTCTCGGAGGAAGA CCTGCGCTCG-GCCGGAGCAC TCGCC GT-CTTCGGCACGC-CGCAGG ATCTGCTCACGCGCT  45 121
JRI60_RS15055 3628809 .. 3628821 -  -4.7  -3.64703   CTCGCGGGAGGGAAA                GGCCC TCA GCGCC                ACCCCTCGAGCACGA  55 18
JRI60_RS15050 NONE
JRI60_RS15045 NONE
        pbpC NONE
JRI60_RS15035 3613901 .. 3613914 -  -5.2  -3.29043   AATCTCCGGCGAGAA               GCCG CCCGTC CGGC                CAGGGCCCGCCAGCG  51 218
JRI60_RS15030 3612530 .. 3612541 -  -7.2  -3.15544   CTGCACCTTCACCAA                CCCG GCCG CGGG                 CACCTGGTACGTGAT  54 488
JRI60_RS15020 3609162 .. 3609179 -  -3.3  -3.39327   TCCTTATATGGAGAA             GCTC-GCC GAG GGCCGTGC             CTTCTTCCGGGCGGA  47 78
JRI60_RS15010 NONE
JRI60_RS15005 3605902 .. 3605937 -   -16  -2.56596   CGCGCCATCAATTCA    TCGAGACGCGGCGCGC GAGC GCGCGCCGCCGCTCGT     TGTTGGACTCGGTGC  71 362
JRI60_RS14995 3603727 .. 3603762 - -14.6  -3.90744   GCGGCTTCGAAACAA    CGAGCCCCACGGCACC GGAT GGGACCGTGGGGCCTG     GTGACGCGTCAGGCA  88 47
JRI60_RS14970 3597305 .. 3597315 -  -6.8  -4.03234   GGGCTTGTACAGAAA                 GAGC CGC GCTC                 TCGGCAAGTCCAGAA  67 75
JRI60_RS14965 3595345 .. 3595380 -    -3  -2.87931   TGGAGGCGCTACAGA    CCGTCTCGGCTCTGCC AGGA GGCTTCACCGGGACGA     GCTACGGGGCGGACA  42 349
JRI60_RS14955 3592561 .. 3592574 -  -3.7  -3.28712   CCTCGTGGCGGAGAA               CCGCC AGGA GGGGG                GCGCTCGCCTGCGCA  47 83
JRI60_RS14945 NONE
JRI60_RS14940 3588828 .. 3588841 -  -3.7  -3.05463   ACGTTTGTGACGCAA               TGCGC GCTC GCGCC                TGCATGGGTCACTCC  44 142
JRI60_RS14935 3586988 .. 3587003 -    -6  -2.52676   CATGCGGCGAATGTA              GCACCG CGCC CGGGGC               CGGCCGGCTCCCGCC  45 42
JRI60_RS14930 3585491 .. 3585521 -    -9  -3.86935   GAAGCAGGACAAGAA       GCAGGCCTTCGC CCTCTTC ACGAAGGCGTGC       GACGCGGAGCTGCCG  67 391
JRI60_RS14920 3583133 .. 3583145 -  -2.6  -3.14931   TCCACCGCCGAGGAA                GCCC CGGCC GAGC                CGCATTCCGAGCCGG  44 298
        mltG 3580424 .. 3580436 -  -9.1  -3.31157   GAAGCATCAGATCAA                CGCGA TGC TCGCG                ACGGGGGGCGGGTCC  58 451
JRI60_RS14890 3576401 .. 3576412 -  -7.2  -3.35679   CTCGTGGATTCAGAA                CGCC TGAC GGCG                 TTCAGCGCCGCCTCC  56 232
JRI60_RS14885 NONE
JRI60_RS14880 NONE
JRI60_RS14875 NONE
JRI60_RS14870 NONE
JRI60_RS14865 3572589 .. 3572599 -  -2.4  -2.79796   CGCCAGCTCATGACA                 GGCC ATA GGTC                 CTCCTCACTGCATGA  38 30
JRI60_RS14860 NONE
JRI60_RS14855 NONE
JRI60_RS14850 NONE
JRI60_RS14845 NONE
        cbiE 3568470 .. 3568481 -  -2.2  -2.54574   TACGCCAATCAACAC                GCCA CTCA TGAC                 TCGTCTCCCTTTGCC  38 19
        cobI NONE
JRI60_RS14830 NONE
        cobJ NONE
JRI60_RS14820 NONE
        cobM NONE
        cobA NONE
        cobO NONE
JRI60_RS14800 NONE
JRI60_RS14795 NONE
        cobU NONE
        cobD NONE
JRI60_RS14780 NONE
JRI60_RS14775 NONE
        cobT NONE
JRI60_RS14765 3554663 .. 3554685 -  -3.2  -3.21099   CGGCGTGACCATCAA           GGAGGGCGGC CTG GCGGGCCTCT           ATTCGCGCGCGGTCG  45 150
JRI60_RS14745 3551371 .. 3551392 -  -5.7   -2.6891   GAGGAGATGATAGCA           CCCGGCCCG TGCT CACGCCGAG            GAACCTCGTGGCCAG  45 82
        infC 3550341 .. 3550366 -  -3.2  -3.06302   AGGACCCTGAGCGAA         GCCTCGGGCTC GCCTG GAGCCCT-GAC         TTCTCTCTTTCCCGT  42 115
JRI60_RS14735 NONE
JRI60_RS14730 3546148 .. 3546186 - -23.9   -5.1861   TTCACCACGAAAAAA   GCCGGGCCCCGCTTCCC AGGGA GGGAAGGGGAGCCCGGC   TCGAATCACGGCCTG 100 48
JRI60_RS14705 3537177 .. 3537228 - -26.6  -3.37344   GCTGGACTGAACCAA CGGATGCGCGTCGCCAGCAGGCGG CGTA CCGCCTGCTGGCGACGCGAAGCAA GCACGTACCGCCGTG 100 199
JRI60_RS14695 NONE
JRI60_RS14690 3531921 .. 3531938 -  -5.5  -3.07816   CGTCCACCGATGCAA             GCGGAGT CGCG ACCCCAC              CTACTGCTTCGCGAC  47 26
JRI60_RS14685 NONE
JRI60_RS14680 NONE
JRI60_RS14675 3529613 .. 3529626 -  -2.4  -2.52464   TGTCGCGGGAAGGGA               CGTA GAGCTA TACG                TGAAGCTTTTTGATA  37 110
JRI60_RS14670 NONE
JRI60_RS14665 NONE
JRI60_RS14660 3522719 .. 3522742 -  -5.8  -3.13403   GTTCTTCCACGAATA          CCTGGGGGCC TGAC GGCTCCCCGA           GTCGGGCACCTGCTT  49 168
JRI60_RS14640 NONE
JRI60_RS14635 3514895 .. 3514924 -  -2.8  -3.97674   CCACCAGGGAAACAA      CGGCGGCTTCCAGG CCCA CCCGGA-GCGGC-G       CTGGAACCCGTGCAC  57 174
JRI60_RS14620 NONE
JRI60_RS14615 3509064 .. 3509074 -  -2.4  -3.50808   TTCATCAGAAGAAGA                 CTCC CAG GGGG                 TTGAGCCTCTCCTCC  48 4
JRI60_RS14610 NONE
JRI60_RS14605 NONE
        lanM 3500911 .. 3500923 -  -4.7  -2.62184   CCGGGCTTCATATCA                CCCCG CCT CGGGC                CCCTCGTGCCCGGAC  42 10
JRI60_RS14595 3499677 .. 3499691 -  -5.6  -2.62184   CGGTTCGTCACAGGA               GGTGGC GCA GGCACC               GCCAGTCCACGCGGC  44 3
JRI60_RS14590 NONE
JRI60_RS14580 NONE
JRI60_RS14575 3494683 .. 3494732 - -13.5  -3.04144   TCTTCATCGGCAACA GCTACCA-GGCCCAGATGCCGGGC TTC GCCCAGGACCTGGGCCATGGAGAC CCCGGCCTGGCCTAT  69 523
JRI60_RS14535 3485662 .. 3485698 - -13.7  -2.89564   GGCTGATCTTACACA    TGGGCGAGCACGGCA CTGTCGT TGCCGTGCTCGCCGC    GGGACGACGGTCAGG  71 36
JRI60_RS14530 3483774 .. 3483796 -  -9.1  -3.27923   TTCCAAGAGCATCAA           TCCGTTCGG GCACG CCGAGCGGA           TGGCCGTTGGGGAGC  61 201
JRI60_RS14520 3482371 .. 3482394 -    -6   -4.2679   GAAGTCCTACGAAAA          CCGCTCTCAAC CGC GTTG-GAGCGC          GCTCGCAGACGGCGC  70 8
JRI60_RS14515 3475936 .. 3475949 -  -3.1  -2.56596   GCTCCGACGAAGGGA               CATGGC GTT GCC-TG               ACGCGGGCACCCGCT  39 472
JRI60_RS14505 NONE
JRI60_RS14500 3471019 .. 3471033 -  -2.9  -2.89602   GCTCGGATATGAAAT               TGATA CGCAT TATCA               TTTTCAGTACGTGTT  41 288
JRI60_RS14495 3469408 .. 3469448 - -11.7  -3.41125   GGCATACAGGCAGAA  GTGTGATGCCGTCGCGGCC CGG GGCTACGAGGGCTTCACCC  TGACGAGGTGAAGTG  70 281
JRI60_RS14485 3467331 .. 3467361 - -11.1  -2.91144   CGAGGCGGGAAACCA       CGGGAACGAGGCG CTTTC CACCTCGCTCGCG       ACCCGGACTACCCTA  61 41
JRI60_RS14480 NONE
JRI60_RS14475 3465438 .. 3465451 -  -3.1  -3.10715   CGGAGGATCACCGAA               CG-TGC TCC GCAGCG               GGTTGTGCGTCCAGG  44 4
JRI60_RS14470 3463960 .. 3463971 -  -7.2   -3.6968   TGACAAGCGGAAGAA                CGGC GACG GCCG                 CGCGATGGTTGAGTG  61 309
JRI60_RS14465 NONE
JRI60_RS14460 NONE
JRI60_RS14455 NONE
JRI60_RS14450 NONE
JRI60_RS14445 NONE
JRI60_RS14440 3457665 .. 3457687 -  -3.2  -2.57013   CGGTAAGGCAACGTA           GTCCCGACCC CCA GCGTCGCGCC           GAACATCCCGATCGA  39 145
JRI60_RS14430 3455345 .. 3455367 -  -7.6  -2.93382   GGGCAGACTCATACA           TCGGCGGG TTCGATT CCCGCCGC           CTCCACTGGAAGTAG  52 116
JRI60_RS14425 3454466 .. 3454483 -  -4.1  -3.55761   CAGTGATCTGCCAAA             TGGACAG GGCA CTGTCAA              TATAGGCGCGTGCGT  51 323
JRI60_RS14420 NONE
JRI60_RS14415 3453243 .. 3453258 -  -2.4  -3.39449   GCGCAGTAACATGAA              GTCCCG CTAC CGGAGC               GCGCGCTCCAGGCCC  46 16
JRI60_RS14405 3448992 .. 3449028 - -21.5  -2.71144   CACTCGCTGTAATCA    CCGCGGCCTCTGGCCGG ATT CAAGCCGGAGGCCGCGG    CTCTTCCCGGAGATC 100 40
JRI60_RS14380 3444019 .. 3444055 - -10.6  -2.51133   TAGTGATTGAGCAAT    CCCCGGGCGACGCCCG CCTCC CGGGCGATGTCCGTGG    TGGAGACTTCCGCGT  59 137
JRI60_RS14370 NONE
JRI60_RS14365 NONE
JRI60_RS14360 NONE
JRI60_RS14355 3438376 .. 3438396 -  -3.2  -3.92324   GCGTCGAAGATGAAA           GCTTCCTGG CTCA CCGGGA-GC            CTCCTTGCGAAACGG  58 51
JRI60_RS14350 NONE
JRI60_RS14345 NONE
JRI60_RS14340 3433487 .. 3433531 -  -9.1  -2.63102   AGGACTGCCAGAGGA CTTTCGCGCAGGCGGCGGGTG CTA CACCCGCTGCCCATTCACAAG AAGCGCTTGAAGAGG  54 19
JRI60_RS14320 3426314 .. 3426326 -  -5.5  -3.53012   CGCTGGCCTTGGAAA                CGGCT GGC AACCG                CTCCTCCCTGGTATT  54 431
JRI60_RS14285 3417801 .. 3417818 -  -4.7   -4.2757   CGCAAAAAAAGAGAA             GCTCACC GCAG GGCGCGC              AGCGCGAGACGGCCC  66 10
JRI60_RS14280 3416463 .. 3416492 - -12.2  -2.71681   CAACGCGGTGAAGTA      CGGCGGCAGCGCCG AGGT CGGCG-TG-CGCCG       GCTCGACGACGGGCG  60 313
JRI60_RS14250 3411879 .. 3411914 - -16.2   -4.4715   CGCTAAGCTACAAAA    CGAAAGGCCCGGTACC GGAC GGTAGCGGGCCTTTTG     CCATCAGTGCTGGAT 100 96
JRI60_RS14195 NONE
JRI60_RS14190 3399243 .. 3399270 -   -15   -3.1082   CACGCACCCAAGAGA        GAGCTCACGCGAG GAG CTCG-GTGAGCTC        CGCGTTCGCCACGCC  76 2
JRI60_RS14185 NONE
JRI60_RS14180 NONE
JRI60_RS14175 3395749 .. 3395760 -  -4.4  -2.94322   ACTGGATTGAAACCA                TCAG GAGG CTGA                 AAACGAGGCCACGAA  44 83
JRI60_RS14170 3394646 .. 3394668 -    -4  -3.65812   CTCCTTTCAAGACAA           CGTGCCGCCA CAA CGACGAGACG           ACGCCGACGTCGAAT  54 45
JRI60_RS14165 3391827 .. 3391841 -    -7  -3.05384   CGCGCCCCGATCGAA               GGGCCG CCG CCGCCC               CCGCGCTCCGGGCCG  49 390
JRI60_RS14155 3390298 .. 3390308 -  -5.4  -3.14132   TGGGTGGGGCATCAA                 GTGA ACT TCAC                 GGCCAACTGGCAACT  49 124
JRI60_RS14135 3386985 .. 3387002 - -11.3  -3.14132   CCGGCGCGGGAGGAA             CGTGCCA GAAC TGGCACG              CGCGAGGGCCCTCCC  64 370
JRI60_RS14125 3385985 .. 3386004 -  -7.1  -2.71364   GCAGGGGCGGAAGGA            CAGCTCC GGCAGG GGAGCCG             TCCGACCGCCCTCCT  48 76
JRI60_RS14120 3384508 .. 3384523 -  -6.8  -3.14132   TGCCGGGGCCAGCAA              GGCCGCG CGC CGC-GCC              GGTACACGGGACGGT  52 481
JRI60_RS14115 NONE
JRI60_RS14110 3381704 .. 3381716 -  -6.2  -3.53811   TTCATGGTGGGGAAA                GGCC CAGAC GGCC                AGCAGCCAGAGGAGG  56 122
JRI60_RS14105 3378531 .. 3378556 - -10.4  -2.83164   CCATTCACGACCAGA         GCTCAGGCTG CGCTCT CTGCCTGAGC          CGGTGAACGGTTACT  59 36
JRI60_RS14095 3376716 .. 3376731 -  -4.6  -4.21936   TGGAGAACGCCAAAA              GCGTTC GGAG GGACGC               GGGCGGGAGTTTTTC  66 229
JRI60_RS14085 3375427 .. 3375462 - -11.2  -4.79223   TCAGAGTATGAAAAA    GCCACCTCTGCCTACTT GGA ACG-AGGGAGAGGTGGC    TCTTCGCAGCAGGGA 100 252
JRI60_RS14075 3372139 .. 3372160 -  -5.7  -3.03124   GGCTACCGGCGAAGA           CCCAGGCGC CACG GCCCCTGGC            TGCGCTCGTCTCAGG  47 36
JRI60_RS14070 3370378 .. 3370393 -  -2.6  -3.50853   CCGGTGGAAGCACAA              GGAGATT GGC AATC-CC              TACACGGAGCCCTCC  48 189
JRI60_RS14050 3364750 .. 3364805 - -13.9  -2.59431   GCCTGCTACAACTGA GGACGCGGCTCTGAGC-GCGGGGCTGG CCAG CCAGCCCCGCGGCTC-GTGCATCAACC CAGCAGCTTGAACGT  69 20
JRI60_RS14025 3362947 .. 3363005 -  -7.2   -4.2558   CAGGCCGGAGCAAAA GCGGCGCAGCCCCTGGGGGTACACGCC GGCCGA GGC-CGCCCACCCAGGAGGTGCGCGGT AGGGGCTCTTCTGGC  72 57
JRI60_RS14020 3361630 .. 3361674 -  -2.5  -3.17194   AGGCCGCCAATCCAA CCCCCGGGCCCGTCTCCCTCC CGT GAAGCCCCACGGCGCCGGGGA GGGCACGTCCAGACT  42 206
JRI60_RS14000 3355308 .. 3355341 -  -2.9  -4.25104   CCCCCTTCAGGAAAA     CTTGGGGTTCGTGCC ACGC AGCGCGCAACCCATG      CAGGAAGAAGGGCAG  63 389
JRI60_RS13995 NONE
JRI60_RS13990 NONE
JRI60_RS13985 3348271 .. 3348286 -  -4.7  -3.65522   GACGGATTCCAAGAA              GAAGC TCGGGC GCTTC               GCTGCCGACTGCCGA  55 445
JRI60_RS13970 3346407 .. 3346465 -  -7.2   -4.2558   CAGGCCGGAGCAAAA GCGGCGCAGCCCCTGGGGGTACACGCC GGCCGA GGC-CGCCCACCCAGGAGGTGCGCGGT AGGGGCTCTTCTGGC  72 57
JRI60_RS13955 3338292 .. 3338302 -  -3.2  -2.62184   GCTGTCGCGACATCA                 CCCT GGC AGGA                 GGCCAGACCTCACAC  39 35
JRI60_RS13950 NONE
JRI60_RS13945 3336707 .. 3336740 -  -4.5  -3.53091   AGCCCTGTTTTTAAA     GCGGCGACACCGGC CAAAGGT GCAGGT-TGGCCGC     TTCTCGAACGAGCAA  52 362
JRI60_RS13940 3335837 .. 3335867 - -19.1  -4.29176   AGAGGGAACGGAAAA       GGGCCCGGAATCG ACTGG CGATTCCAGGCCC       TTGTATTGCCGTGCC 100 76
JRI60_RS13935 3334117 .. 3334132 -  -6.1  -3.13403   CTGCCGCCATCAACA              CCTCC TTGGGG GGAGG               TCAGAGGCGGCGGCT  51 162
JRI60_RS13930 3333732 .. 3333757 -    -9  -3.28712   CCGGGTGGTCCACAA         CGCCCACC-GC ATCAA GCTGATGGGCG         AGTCCATCCGCAAGC  61 11
        istB 3328735 .. 3328755 -  -5.4  -3.53012   CGCTCCGGTGGCAAA            CGCCCTTG GGATG CAAAGGCA            GTGAGTTGGGTCCGC  54 208
JRI60_RS13895 3325855 .. 3325902 - -15.4  -3.01712   GCCCCTTGGGGAACA CGCC-GGCCCTGGCCGCCCTCCC ATG AGGAGCGCGGCAGGGGCCTGGCT CTCTTGGCCCTGGCG  77 50
JRI60_RS13890 3325256 .. 3325290 -  -7.6  -3.53091   AGTCGCGCGTTCAAA     CGCTGGCAGGGCGAGA GCC CCGCGACCTTCCGGCG     CGCGCTCGAACAGCA  60 53
JRI60_RS13880 3323664 .. 3323687 - -11.7  -3.16564   CCCTGAGTGGAGGAA          CGGCCCCAC CGCGGC GTGAGGCCG           GGCGGCGACGGCGAC  66 222
JRI60_RS13850 3318891 .. 3318924 - -10.9  -3.31501   AGCAATCCGGTACAA     CGCCCGCGTGCG-CGC CGA GCGTCCCACGTGGACG     AGCGTGGGGGAGCTG  66 447
JRI60_RS13845 NONE
JRI60_RS13840 NONE
JRI60_RS13830 NONE
JRI60_RS13825 3313641 .. 3313653 -  -6.9  -4.63218   GGGGGCGGAAGAAAA                CCCCC CTC GGGAG                TGTGCCTGGAAGGAC  79 53
JRI60_RS13820 3311741 .. 3311773 - -13.5  -3.26471   GTAGTCGGACACGAA     GCGGGGAGGGGGACG GATGT CG-CCCCCTCCC-GC     TCACGCCTCCGGACG  73 48
JRI60_RS13810 NONE
JRI60_RS13805 3307344 .. 3307364 -  -3.1   -3.7732   GTGCGACATCAAGAA            GGCGGGAGA GTT CCTCCAGCG            GCCCGATGTCCAGGC  56 436
JRI60_RS13785 NONE
JRI60_RS13780 3303426 .. 3303455 -  -2.7  -3.53012   GCTCCTGTTGCGAAA       CGCTGCCCCGCAT CTCC ATGCGGAGAACCC        GCGAGGCTTGCAAAG  49 116
JRI60_RS13775 3302799 .. 3302809 -  -6.8  -3.14564   GCAGCCCTCGATGAA                 CCTG GCG CAGG                 CGGCGGCGGTGCTGC  51 354
JRI60_RS13765 3301710 .. 3301739 -  -5.5  -3.53091   ACGCGGGGCGCGAAA       GGAGGCGCGACTC TACT GGACCGCGCCCGC        CTGGGAAGCGGGACC  54 8
JRI60_RS13760 3300589 .. 3300619 - -13.3  -3.33151   GCCCGCAAAGGAAGA      CGCCCTC-CCCCGC CAAA ACGGAGAGAGGGCG       TGGACCGTGGCCCCT  73 123
JRI60_RS13755 3299707 .. 3299717 -  -2.4  -2.52742   ATTGCGCGAGAACAT                 GGGG CCT CCTC                 CTCAGCGAACGAAGG  37 27
JRI60_RS13750 3298671 .. 3298690 -  -5.6  -2.78384   GCCCGCTGTACCACA            CACGTCAC ACGG GCGGCGTG             GGCATTCAGCGCACC  45 31
         dut 3298127 .. 3298149 -  -7.7  -3.05384   GGTGGGGGGACGTAA          CGGG-GCCCT CCAG AAGGCACCCG           CAGTCCTCTTAACCC  53 73
JRI60_RS13740 NONE
JRI60_RS13735 NONE
JRI60_RS13730 3293197 .. 3293213 -  -5.1  -3.37796   GGTGAGCATCGACAA              GACGG GGAAGAT CCGTC              TGTCGCGCAAGGAGG  51 402
JRI60_RS13680 3281284 .. 3281315 - -10.8  -2.66316   CTGTTCACGAGATGA      GTTCCAGTCCCCAG TGTA CCGGGGATTGGACC       CGGCACCCAGGGGCC  59 63
JRI60_RS13675 NONE
JRI60_RS13670 3279902 .. 3279923 -  -4.3  -3.06815   ATGGTCTTGAAGAGA           CGCATGGGA GAGC TCCCGTGCT            ACTTCCACTTCGAGG  45 24
JRI60_RS13665 NONE
JRI60_RS13660 NONE
JRI60_RS13655 3275766 .. 3275809 - -10.2  -3.40371   CACGTCACGAAGGAA TTCTGGATGTACCCGGACGA CATG CCGGCCGAGCTCATCCAGCA GACGATGGTGACGTC  61 262
JRI60_RS13625 3271667 .. 3271677 -  -2.4  -3.40403   CCTCCTCGACGAGAA                 CGCC TTC GTCG                 GGGCCACCCGGGACA  45 281
JRI60_RS13590 3260782 .. 3260795 -  -8.1  -3.54935   CAAAGCGCCGCGAAA               GGGGT CAAA ACCCC                AGCAGCCCGGAAGGT  60 66
JRI60_RS13585 3259585 .. 3259634 -  -6.2  -2.74563   TGCACAGGGGAATTA CTGGGCTCATC-CTTCGGCGCGG GTGGG CGGCGCCCAGGTGACGGGCCCGG CGTACTTCGACGCGG  46 339
JRI60_RS13570 3256005 .. 3256034 - -21.5  -3.21099   GCCCCTGACGACGAA       GGGCCCCGGGTTC CGGA GAACCCGAGGCCC        TGGTCTTGGGGCGGG 100 103
JRI60_RS13565 3254226 .. 3254242 -  -7.9  -2.52676   CATGGGCTCAACCTA              GCACGGG TCC CCCGTCC              ACTGCCTCAGCGGCA  49 32
JRI60_RS13560 3252788 .. 3252810 -  -7.6  -3.14931   TGGAGGGTCCACGAA           GTCCTTGGAC AGG GTCCGAGGGC           CCGTGGATGTCCCCT  54 211
JRI60_RS13550 NONE
         bla 3249946 .. 3249964 -  -6.6  -3.05022   GGCGCGAGAGAGACA             TGGGAGAC GGA GCCGCCCA             GGGGGGCGGCGGTGG  49 104
JRI60_RS13540 3247880 .. 3247913 -  -5.2  -3.01712   TGCGTGGCGTGAAGA     CGCTGGGCGT-GCGC ATGGA GCGCCACGCGCAGAA     CGCGATGAAGGTGGC  47 499
JRI60_RS13530 3245563 .. 3245581 -  -2.2  -3.14564   GGATGGTGGGACGAA             GCCGCCGC CGG ACGCTGGC             ACCACCTGCCCGCCG  44 464
JRI60_RS13520 NONE
JRI60_RS13515 3242735 .. 3242766 -   -13  -2.53263   TCCAGGTCTAAGCCA      CGCAGTCGAGGGAG TCGA CTCCCTCGAATGTG       GCATGAATCACTACG  66 72
JRI60_RS13510 3242006 .. 3242021 -  -3.2  -2.62184   CGGTCCGTCAGAGGA              CGCG CTGGTATT CGCG               CACCAGGAGCTTCAT  39 2
JRI60_RS13490 3238852 .. 3238862 -  -4.6  -2.63596   GCGCATGTCACAGCA                 CGCG GAG CACG                 AAGCACTTGAGGTAG  42 7
JRI60_RS13485 NONE
JRI60_RS13480 NONE
JRI60_RS13475 NONE
JRI60_RS13470 NONE
JRI60_RS13465 3235125 .. 3235159 -  -4.3  -3.59979   TCCTTCGAGCTGAAA    CCGGTGCAGCT-CCAGG AGT CGTGGGAGCTG-ACCTG    GCACAGCACGCTGGG  55 241
JRI60_RS13445 3230045 .. 3230062 -  -7.7  -2.53995   ATGGAGCGCAAGCTA             CGAGGGAG AAG CTCCC-CG             CGCTTGAACGGATGC  50 5
JRI60_RS13440 3228481 .. 3228502 - -11.5  -2.92642   ATCAGTACCCAGACA           CCGGGGCAC GGCG GTGCCCGGG            GAGCGCCCATGAAGG  63 493
JRI60_RS13395 NONE
JRI60_RS13390 3216379 .. 3216389 -  -3.2  -3.28712   GCGCGTGCTCGAGAA                 CGAG GAT CTCA                 ACGCGCTCGCCGGCG  47 115
JRI60_RS13375 3212700 .. 3212721 -  -5.7  -2.62184   CGGGCCTTGAGAGCA           CGCCCGCGG ACTT CCGGGAGCA            GGCGAGGGCCTTCCT  43 213
JRI60_RS13360 3209824 .. 3209856 - -10.6  -3.14344   CACCCTTCCCACGAA      GGAGCGGAGACG AACCGTCGG CGTGTCCGCTCC      TTCGTGCGTGCCGCG  64 49
JRI60_RS13310 NONE
JRI60_RS13305 3195651 .. 3195669 -  -4.4  -3.28712   GGCGTTCCTCGAGAA             GCGCACGC CCC GCTTCCGC             GGCCAGTGAGGCTGG  49 56
JRI60_RS13285 3192405 .. 3192441 -  -3.8   -3.4252   GCTCATCGACGACAA   CATCCGCGACGA-GGTGA AGA TCACCATCATCGCC-ACG   GGCTTCGTGTCGCGC  47 342
JRI60_RS13255 NONE
        kaiC NONE
JRI60_RS13245 NONE
JRI60_RS13240 3175446 .. 3175470 -  -3.4   -3.5764   AAGGTCACTGCCAAA         GCACGGGTCGG ATGC CCGGC-CGAGC          AGAGCCCAGACGAGC  49 141
JRI60_RS13235 NONE
JRI60_RS13230 3173389 .. 3173401 -  -4.7  -3.05384   GTTTTCTGGATTGAA                CCCGG GAC CCGGT                TCGCGAGGCTGCGGA  45 47
JRI60_RS13225 3171937 .. 3171952 -  -4.6  -3.23274   TGCGGGAGAAGGGAA              TGCTCG GCTA CGAGCC               GGAACTGCACCGCCT  47 355
JRI60_RS13215 3166769 .. 3166787 -  -2.3  -3.70446   GGACAGGCAAGAGAA             TGCGGCC ACCAG GACGGCA             AGGAGGCGCCGGGAA  51 165
JRI60_RS13210 3165834 .. 3165848 -  -5.6  -3.29459   CATGTAACAATCGAA               GGCGTG GGA CACTCC               TGCTGCGATGTCTGG  51 157
JRI60_RS13205 NONE
JRI60_RS13200 3164460 .. 3164498 -  -8.1    -4.015   TCATTTATGAAACAA  TCCCAGGGAGGC-AGGTC AGAT GACCTAGGCTCCCTGGTC   CATTTTTGAAACGAG  68 195
JRI60_RS13195 3163542 .. 3163557 -  -2.6  -4.56775   AGCTCGTTTCAAAAA              TGGACCT GAG AGGTC-A              GGTAACATGCCCTGC  67 41
JRI60_RS13190 3162131 .. 3162147 -  -5.1  -3.86653   ATGGACTAAATACAA              GATCAAG GTT CTTGAGC              AAGGCTCCCAGGATT  60 385
JRI60_RS13175 3160168 .. 3160178 -  -6.8  -4.56597   GCTCGGGTCGAAAAA                 GCTC CCG GAGC                 GCGGGCGTTCACTTG  77 34
JRI60_RS13160 NONE
JRI60_RS13155 3155055 .. 3155085 -  -7.4  -3.34398   GCCTCTCCTGAAACA       TGAGGGGATGGCTC AGG GCGCCGCCCCGTCA       GAAGACGATGCAGTC  56 23
JRI60_RS13150 3153098 .. 3153114 -  -4.4  -3.64599   GGAGGAGACTGGAAA              CGTGGT CCTCT ACCACA              CTTCCCACGCGGTAG  55 78
JRI60_RS13145 3151857 .. 3151869 -  -6.3  -2.71364   CCAGGTTTGGAAGTA                CGTTT CAG AAACG                AAGAAGTAATTCATA  47 273
JRI60_RS13055 3130651 .. 3130686 -   -22  -4.95758   ATCATAGGACAAAAA    CGAGGCCGGG-CCTCCA AAG TGGAAGTCCCGGCCTCG    GGAAGACGACAGCAC 100 50
JRI60_RS13050 3129780 .. 3129790 -  -2.4  -4.08692   CAAGTCCGTGGAAAA                 GGCC ACC GGCT                 ACCCGCTCTCCGCGG  58 115
JRI60_RS13040 3127382 .. 3127423 -   -18  -2.71731   GCGAGCCCCTAAGCA CGCGCCGCGCCAATCCCT CGGAAC AGGGGTTTACGCGGCGCG  TCGTGCAGGGGGGTG  85 112
JRI60_RS13035 3126476 .. 3126518 -  -4.7  -2.78816   CCACCTCCGAGGACA TCTGCCTGGTGCCGTCCTTCG GCA CGGAGGT-GGC-CCAGGCCGC GCGGGCGCTCAGCGG  42 140
JRI60_RS13025 3124477 .. 3124491 -  -3.4  -2.74012   TCACGACGCGAATCA               CGGGGC GTC ACCTCG               AAGGGGGGACCACGG  40 55
JRI60_RS13020 NONE
JRI60_RS13015 NONE
JRI60_RS13010 3121078 .. 3121110 -  -3.4  -2.74563   TCGAGACGTCAACCA     CGGTCGTGACCCGAGC CTA GCCCGGAT-ACC-CCG     GGCTCCGCCCCTGGG  40 99
JRI60_RS13005 3119959 .. 3119994 -  -2.3  -2.57211   ATGGCCTTCCAGAAG    GGGCTC-GGGGCCTGC CACTC GCTGGCCCATGCGCTC    ACGCCCATCTCCGGC  38 430
JRI60_RS12985 NONE
JRI60_RS12980 NONE
JRI60_RS12975 3114834 .. 3114850 -  -8.7  -2.90763   GGGAGAGGGGACACA              CACGGAT GCA ACCCGTG              TGGCTCAGGACTACT  54 36
        ligA NONE
JRI60_RS12955 NONE
JRI60_RS12950 3109577 .. 3109597 - -12.5  -3.61178   TCCATGGACCCCAAA            CGCCCCGCC CCT GGCGGAACG            TCCCAAGGTCCGAAA  74 159
JRI60_RS12945 3106397 .. 3106409 -  -9.1  -3.06796   CGTCAGGGTAGCCAA                TGCCG GGA CGGCA                CGGCAGGGGGGGAGG  57 117
JRI60_RS12940 3104875 .. 3104887 -  -6.2  -3.34894   AACCCCTCGGAAACA                GGGC GCATG GCCC                GTGGTCGAATCCCGG  53 100
JRI60_RS12935 3104238 .. 3104280 - -13.3  -2.82015   CGGAGATCGAGGAGA CCCTGCG-GGCTGCCGGACC GCGC GGACCGGCACCCTCGCCGGA GCGGGTGGCGGAGAT  63 241
JRI60_RS12875 3094902 .. 3094914 -  -9.1  -3.39327   CGGCTACATCCAGAA                GCCCT TCA AGGGC                GCGGAGCTGATGGCG  58 107
JRI60_RS12860 NONE
JRI60_RS12855 NONE
JRI60_RS12850 3089494 .. 3089511 -  -8.4  -3.05816   GGAGGCTCCAGTGAA             TGGCGC GGCTCA GCGCCA              GTACATGTCGAAGGT  55 17
JRI60_RS12845 3088714 .. 3088732 -   -11  -3.37796   CGTCATCATCCAGAA             GCACCTGG TGC CCAAGTGC             GCCATGAAGGTGAAG  64 264
JRI60_RS12820 3082221 .. 3082234 -  -5.2  -2.82623   GTGCCCCTACAACTA               CGGG TGCATT CCCG                GGCTGGGCTCTGGGG  44 305
JRI60_RS12810 3079874 .. 3079892 -    -3  -3.54424   TCTGACGCTCGGAAA             GGAGGGCA GCC TGATCTCC             ACGCGGTGCGGCGAG  50 252
        fliB 3076384 .. 3076397 -  -2.3  -3.72784   GGGAGAAGAAATCAA               GACGC GCTC GTGTC                TGGGTTTTTGTGGCC  51 179
JRI60_RS12790 3074967 .. 3074999 -  -5.4  -2.62263   ACCTGCGGGACATCA     TGC-CGGTGGTCGCG CCCA CGCTGCCGCCGCGCA      ACTCCGCTCGCAACG  43 499
JRI60_RS12735 3061401 .. 3061413 -  -3.3  -3.10796   GGGCATCACGGAAGA                GGCGT TCA AAGCC                GCCATCGAGAAGTGC  43 93
JRI60_RS12710 3056302 .. 3056317 -  -2.6  -4.56775   AGCTCGTTTCAAAAA              TGGACCT GAG AGGTC-A              GGTAACATGCCCTGC  67 41
JRI60_RS12705 NONE
JRI60_RS12700 NONE
JRI60_RS12695 3053456 .. 3053468 -  -6.2  -3.35679   CCGTGGGACTCAGAA                CCGG GAGCG CCGG                ACCTCGAGCAACCAC  55 7
JRI60_RS12660 3047300 .. 3047314 -  -6.4  -2.78596   CACCGCGTCACCAGA               TGATGC TCT GCACCA               GCTCGTCGATCTTCT  47 3
JRI60_RS12655 3045754 .. 3045768 -  -2.1  -4.15044   CCCGGCGGGAAGAAA              CG-CAC CCCC GTGACG               TGTTCTAGGGCTTCG  58 30
JRI60_RS12650 3043629 .. 3043640 -  -7.2  -3.14344   CAGCTCTCGGAGGAA                GCCG GAAG CGGC                 GAGGCCAGGACGCAG  54 71
JRI60_RS12630 3037680 .. 3037726 -  -9.2  -2.71681   CAACGCGGTGAAGTA CGGGGGAGAGGCACGGCGTGTC GAG GTGACGCTCTCCCTCTCACCCG GGCTGGCCATCGTCC  51 263
JRI60_RS12585 3024883 .. 3024935 -  -6.8  -3.06133   GAACTCGTCATGGAA CTGTCCCGGGGTGCTCCGCACGAGCG CGC CGC-CGTCCAGAGCGCCCTGGC-CGG ACAGGACGTGGCTCC  49 191
JRI60_RS12545 NONE
JRI60_RS12540 3015301 .. 3015316 -  -6.1  -2.70932   GTTCGCCCCGAAGGA              GCTGC CGGTGC GCAGC               CGCAACCTCAAGGGA  46 144
JRI60_RS12515 NONE
JRI60_RS12510 3009719 .. 3009731 -  -4.7  -2.74012   CCAGGATTTCAAGCA                CGGGG CAC CTCCG                GGCTCGGCTCCGGCT  43 6
JRI60_RS12505 3008681 .. 3008730 -  -2.8  -3.54424   CGTCACCCGTTGAAA CGCCCGCCGCACCCGTCCTCTGCCT CGG ACGC-GAGGGTGGGT-CGG-AGGCA ACTCGCAGTCTCGGG  49 85
JRI60_RS12500 NONE
JRI60_RS12475 NONE
JRI60_RS12470 NONE
JRI60_RS12465 3000801 .. 3000831 -  -3.8  -3.55444   TCGCGACGCTCGAAA       TCCACCACGGGGCG TTG CGGCACCTGCTGGA       GCTGTGCAGGGAGCG  50 346
JRI60_RS12450 2998148 .. 2998193 -  -5.2  -3.14132   CGCGCTGTGGACGAA GCTGGGGAGCACCACCGC CTTCGTCACC GCGGGGGCGCTCGCCGGG CTGAGCGCGGTGCTG  49 105
JRI60_RS12435 2994879 .. 2994920 - -17.1  -3.53012   GGCGGGTCGCTGAAA GCGCCGAGGGGGCGCCGCC GTCC GGCGGAGCCCCCTGGGTTC  GGGGTTCAGATCTCC  89 31
JRI60_RS12420 NONE
JRI60_RS12415 2992233 .. 2992246 -  -3.7  -3.48924   CCATGCCTCATACAA               CGGAC GGGG GGCCG                AGGTCACTCCGGACG  51 53
        rnpB 2991739 .. 2991779 -  -6.8  -3.65046   CCTGCAGCTCAAGAA CCCGGACGCGG-TGCGC AATGACGG GCGCAGCCGCATCCTGC  TCGTGCAGGTGCCCG  59 69
        ftsY 2989401 .. 2989422 -  -7.1  -3.09492   TCGGCAAGCCCAACA           TGGGCGCCC TGCT GGGCGCCGG            GGCGGATGGCAAGGC  49 108
JRI60_RS12390 2986806 .. 2986843 -  -9.7  -3.47227   CGGCAAGGAGTACAA   CGTCGACGTCAACCTGC GTCC GCTCGTCGCCGCCGACG    AGCCGCGCAACCCGG  64 311
JRI60_RS12380 2985198 .. 2985219 -  -2.1  -3.71848   TCTGGCCATCAACAA           CGCC-CGCGC GGT GCTCGAGGCC           CTGCTGGGCCAGCAG  51 351
JRI60_RS12360 2980205 .. 2980215 -  -2.4   -3.9461   GCTGGCGAAGAAGAA                 GCAG GTG CAGC                 TCCGGGACCTGGACG  57 393
JRI60_RS12350 NONE
JRI60_RS12345 2977204 .. 2977257 -    -8     -3.67   CGAATCGGGAAAAGA GGCCT-TCCGGTCGGAGCA-CTGAGC GCTT GCACGGACGCCCCGGCCGGACAGGCG GGGCAGGGAACCGTG  63 232
        thrS 2975838 .. 2975850 -  -6.2  -2.92192   GCGCAGCCAACCACA                CCCG CACGT CGGG                GCTCCAGACTCATTC  48 149
JRI60_RS12335 2974427 .. 2974445 - -13.2  -3.03203   CCATCAAGAAGCACA             TCCTCGAG CAT CTCGAGGA             CTTCGTGGTGCGGCA  66 447
JRI60_RS12325 2972890 .. 2972902 -  -4.7  -3.31792   CTACGACGTGGACAA                GGCCC AGC GGGAC                TGGATGCGCGAGGTG  49 359
JRI60_RS12270 2962215 .. 2962239 - -14.2  -3.61398   TGTCCTTCTGAAGAA          GGGGGGCTCG ACAGG CGGGCCCCCC          GAATCCGCCGCGCGT  78 40
JRI60_RS12255 NONE
        tolR NONE
JRI60_RS12245 NONE
        tolB 2956762 .. 2956806 -   -10  -3.01924   CACGGTTTCCGAATA CCCTCAC-CCCAGCCCTCTCCC AGG GGGAGAGGG-TGGGTGTTTGGC TCAGCGGCCCCAGTC  60 26
JRI60_RS12235 2956250 .. 2956263 -  -2.3  -2.76162   TAGTTCAGGGCAAAC               CGCCG GAGC CAGCA                CGGTTTCCCCGATAC  38 92
JRI60_RS12230 2955793 .. 2955833 -    -9  -2.52464   GGTGGGCGCAATGTA GACCCTCACCCCAGCCCTCT CCC AGAGGGA-GAGG-GAGGGGC TTCCGCGTCCTTGCT  54 39
JRI60_RS12225 NONE
JRI60_RS12220 2952495 .. 2952528 -  -7.4  -2.71011   ATGGTGGCGTAACGA    GGCATCCGCCGAGTCT ACCC AG-CGCGGCGG-CGCC     TCCAAAGCTTCCGCC  51 65
JRI60_RS12215 NONE
JRI60_RS12210 2950245 .. 2950257 - -10.5  -2.87132   TCGGGCCTCGACATA                CCGGG ATG CCCGG                TCCATGTCCTGGTCT  59 82
JRI60_RS12205 2948991 .. 2949009 - -13.2  -2.53343   ACACGCACGAGCAAG             TCGAGCAG GTC CTGCTCGA             ACATTTCGGAATTCC  62 134
JRI60_RS12185 2943054 .. 2943106 - -11.2  -3.28712   GTCGCTCTTCGACAA GCCCGAGACCGCCTCGGCGCTCGTCC CGG GGTCGAGCACC-ACG-GGCCCCTGGC CGGACTCGGCGTTGA  64 103
JRI60_RS12170 2938595 .. 2938607 -  -6.9  -3.72324   CACCGGGAGCAAGAA                CGCCG CGT CGACG                AAGGGCACCCAGGGC  61 503
JRI60_RS12155 2937515 .. 2937525 -  -2.4  -3.21276   TCTGGCGCGAGAAGA                 CCGG GAG CGGG                 GGGGAGATCTTCTAC  44 240
JRI60_RS12055 2909689 .. 2909721 - -22.2  -3.66908   GCGCCCTAAAACCAA      GAAGGGCACCTGGA TTATT TCCAGGTGCCCTTC      GGATTCAACACCAAC 100 66
JRI60_RS12050 NONE
JRI60_RS12045 NONE
JRI60_RS12040 2906702 .. 2906733 -    -5  -3.31144   GCGCCAGCTGGAGAA      CATCGTCGAGCGCG CGGC CACGCTGGCGGATG       GGGACGTGCTGACGC  49 323
JRI60_RS12005 2897948 .. 2897965 -  -5.5  -2.62184   CCTCCGCCTACATCA             CTTCCAG TCGA CTGGAGG              TGAGGGGAGGAGCCG  44 46
JRI60_RS12000 2896686 .. 2896696 -  -2.4  -3.61178   GCCATCTAGGCCAAA                 GCGC CGC GCTC                 GCCAAGGGGCAGTGT  48 40
JRI60_RS11995 NONE
JRI60_RS11990 NONE
JRI60_RS11985 2894481 .. 2894528 - -17.9  -4.21194   TGCCAGGACTGAAAA CACGA--AGGGGGCC-TCCACCCG CGG CGGGTGGCCGGCCCCCTCGTCGTG TCCGGTGGGCTCACT 100 36
JRI60_RS11975 2889487 .. 2889500 -  -2.3  -3.73534   CAATGCGACCAAGAA               CGCCA TCCA TGGCT                TCACTCTGGAGGCTG  55 207
        alaS NONE
JRI60_RS11945 NONE
JRI60_RS11940 2880538 .. 2880548 -  -2.4  -3.50853   CGTCCGGAATGAGAA                 GGTC TGA GCCC                 CGTCGGGGCTCGGGT  48 105
JRI60_RS11935 2879772 .. 2879808 - -25.2  -3.98214   ATGAGGGACGAGAAA    GCCCCGCCGCACCTCG GCTCG CGAGGTGGGGCGGGGC    GCGTCTTCGGGGTGC 100 56
JRI60_RS11920 2875700 .. 2875730 -  -6.6  -3.32343   CGCAGAGTCGGATAA       CGCCACGAGCGCGC GCT GCGTTCCCGCGCCG       GGGCCACCAGACGAG  53 58
JRI60_RS11915 2872237 .. 2872282 -   -24   -4.6635   AAAGCGTCAATAAAA CGGGCGGCTTCCGAGGGGGC GGGTGA GCCCCGACGAAAGCCGCCCG GAAGGAAGGCGATAG 100 50
JRI60_RS11910 2871162 .. 2871184 - -18.4  -3.17229   ACCTCATCACCAACA           GGCCCCGCGC CGT GCGCGAGGCC           CTGCGCGCCGGGGCC  90 40
JRI60_RS11900 2869762 .. 2869793 -  -7.9  -2.73364   GGGGCACCTCAAGCA      GCAGGCCCGGCTC ACGAGG GATCCGGACGTGC       TCTCGCGGCTGGTCA  49 369
JRI60_RS11885 2866121 .. 2866143 -  -7.6  -3.53811   GCGAGGCCCTCGAAA           CCTGGGCC CCTTATT GGCCCCGG           GACGTGGCAGCAGCT  60 83
JRI60_RS11870 NONE
JRI60_RS11865 2862544 .. 2862571 -  -7.1  -2.88663   ACCCACGGCGAGAGA       CCT-CG-GGATCC GTGA GGATCCTCGCAGG        TGCATCTACTTTGTC  50 91
JRI60_RS11860 2859273 .. 2859287 -  -5.6  -3.01712   TCGGCGTGGCGAAGA               CGGCGT TCC ACGCCC               ATGTGGCGGTGCCGG  47 196
JRI60_RS11850 NONE
JRI60_RS11845 2855931 .. 2855944 -  -4.5  -2.92246   GGAACCCGAAGGACA               CG-GCG AGC CGCGCG               GCGCTGGGCACGGTG  44 430
        ruvX 2853765 .. 2853776 -  -5.8  -3.72893   CACCTCTGGATGAAA                GGGA TCAG TCCC                 TTGCCTTCCAAAGAT  57 153
JRI60_RS11825 2852639 .. 2852654 -  -6.8  -2.57931   GCCAGGGGTGAGAAT              GGGGAC TGTT ATCCCC               GGGGACAGGAGGGCG  47 163
JRI60_RS11820 NONE
JRI60_RS11815 2850701 .. 2850723 -  -4.1  -3.16564   TCGCCAGCCGATGAA          CCTG-CGGCA CCAG TGCCGTCACG           TGATGGAGGAGCTGG  47 467
JRI60_RS11805 NONE
JRI60_RS11800 2845207 .. 2845226 -  -9.2  -3.51924   CGGCCATGGACAGAA            CGAGCTCG AGGA CGCGCTCG             CCCAGGCCGCCGCGA  61 418
JRI60_RS11780 NONE
JRI60_RS11775 2839783 .. 2839829 -  -3.8  -3.52073   CCTGGAACAGGAGAA TGGCGATG-TGAGGTCATGGGA CTACC TCCCAGGACCTCAACTTAG-CA GGTTCCGTACCCCAG  51 89
JRI60_RS11770 NONE
JRI60_RS11765 NONE
JRI60_RS11760 NONE
JRI60_RS11755 2836062 .. 2836105 -  -2.2  -2.62616   GCACCGTCGATACCA GCCGGAGAGGGAACGATTCCG CGC CAGT-TCGCAGCCCTTCCGGC TTCGTTGACGCTGTG  38 305
JRI60_RS11750 2835536 .. 2835560 -  -6.4  -2.66316   CTCTCTATTACACGA         CAGGTCGCCGC AGGT GCGGCGAA-TG          GAGCCGGTAGTCCGC  46 80
JRI60_RS11745 2834719 .. 2834735 -  -9.3  -2.62184   CGGCTCGGCAGACCA              GGAGCGC TAC GCGCGCC              TGGCCGCCGAATAGA  54 15
JRI60_RS11725 2830260 .. 2830282 -  -2.6  -2.69319   AAGTGCTTATATAAC           GAGTAAAGGA CTT CCCTCCCCTC           TGAAGGGCCACCTGG  38 91
JRI60_RS11720 NONE
JRI60_RS11715 2828298 .. 2828315 -  -2.7  -3.64703   CTTTTCCCAGGTAAA             GTCAGTGA GAA TCACCG-C             GAGGAATAGGCACTT  53 497
JRI60_RS11705 2826280 .. 2826296 -  -4.3  -3.17212   CCATCATCCGACGAA              CTTCCAC ACA GCGGTAG              GCGCGGGGGCCCGCC  47 102
JRI60_RS11690 2822430 .. 2822450 -  -7.5  -3.31144   GTGGGACCGCGAGAA            GACCTGGGA GGG TCCCACGCC            CTGGCGGTTCAAGGG  55 468
JRI60_RS11680 2820761 .. 2820773 -  -9.1  -2.53876   TCTCACGGGAACGGA                GGGCA CGG TGCCC                GGGAGGGCGCGCTCC  54 74
JRI60_RS11665 2817729 .. 2817759 - -11.8  -3.25823   GCTGCTGTACATGAA       CACCAAGTCTGCCT TCA AGGCGGGCCTGGTG       ATGCTGGCGGTGCCC  65 499
JRI60_RS11645 NONE
JRI60_RS11640 2808509 .. 2808531 -  -6.1  -3.70902   CGGGTTACAGGGAAA           CCCGCCAGG GCACT CCGGCCGGG           CACTTCGCACCGCCA  59 463
JRI60_RS11625 NONE
JRI60_RS11620 2803308 .. 2803321 -  -5.2  -3.28712   GTCCTTCCCGGACAA               GCGG CGCTTC CCGC                CCGAGGAGCGGGACT  51 127
JRI60_RS11605 NONE
JRI60_RS11600 2795041 .. 2795064 -  -3.6  -3.14132   GTCGCGCCGCAGGAA          GGCGAGCAGC AGGC GCATCACGCC           TCCTCCCGGGGCACG  45 19
JRI60_RS11595 2794158 .. 2794183 -  -6.1  -4.08767   TCCACGGGGTGAAAA         GGCACACTCCAT TAT AAGG-GTGCGCC         GGGCGGCGGGGAGGG  66 103
JRI60_RS11590 NONE
JRI60_RS11585 NONE
JRI60_RS11580 2789200 .. 2789212 -  -6.2  -2.88249   GAGAGGGGGCATACA                CGGG TTCGG CCCG                GTTAGAGGTCGATCT  48 27
JRI60_RS11575 2787843 .. 2787856 -  -2.3  -3.01712   GCTTTTCGGGGAAGA               GCCTA TTTC TGGGC                GCCCACCGCCGCCAC  41 14
JRI60_RS11570 2786403 .. 2786430 -  -4.8   -3.6682   GGTGAGCTACGGAAA        GCGCTCGTACGAG GAG CTCGGA-GAGGGC        CGCATCCGGCTGCAC  55 194
JRI60_RS11560 2782986 .. 2783017 -  -5.7  -3.07233   GCAGAAGCTGGAAGA      GAGCGGGCTCGGC GCGGAT GCCGAGCGCATCC       GGCATCACTTCGGAC  47 148
JRI60_RS11530 NONE
JRI60_RS11525 NONE
JRI60_RS11520 2768820 .. 2768844 -  -4.1  -3.06492   CCATTCACGCGAAGA          GCCAGCTGAAG ACC CTTCCGTGGGC          GCCAATGAAGCTGAA  45 457
JRI60_RS11500 NONE
JRI60_RS11495 NONE
JRI60_RS11490 NONE
JRI60_RS11485 NONE
JRI60_RS11480 2758870 .. 2758880 -  -4.6  -3.01712   CGGTGCCGCTCAAGA                 CGCA GGA CGCG                 GCCAACCCCTTCACG  45 175
JRI60_RS11460 2753797 .. 2753810 -  -2.3  -2.83747   CAACTTCCACAAGCA               GCTCG AGGG CGAGG                TCATCGTCGAGAGCC  39 436
JRI60_RS11440 2751668 .. 2751683 -  -4.6  -3.55622   GGGAACGGCCTCAAA              CGGCCC GCGC GAACCG               CTGCAGCGCCTCGCC  52 5
JRI60_RS11435 2748348 .. 2748373 -  -5.3  -2.57132   TCCGGGGCTCACAAG         CCGAGGGCGTCG TGC CGCC-CGCTCGG         ACTCCGGGCGGGCTT  44 43
JRI60_RS11430 2747978 .. 2748000 -  -6.8  -3.14132   GCCCGTGGCCAGCAA           CGCCACGCCC AAG GGGCGCGCCC           GCAACCGCCGCATCG  51 121
JRI60_RS11410 2744734 .. 2744766 -  -2.6   -3.5486   GAGGGGAAGCAAATA     CCCTCACCC-CAG CCCTCTCC CAGAGGGAGAGGG      AGCTTGCGACAGTGG  48 42
JRI60_RS11405 2743686 .. 2743700 -  -2.7  -3.30124   GCGGAGGCTCTACAA               GCGGC TCCAG GCCGA               GCAGGTTCGTGTCCT  46 358
JRI60_RS11395 NONE
JRI60_RS11390 2739796 .. 2739815 -  -4.2  -3.12351   TGCTGGGAGATCCAA            CCCCCTGA GCCT TCAGGATG             ACACCGGAGCAGGCG  45 18
JRI60_RS11380 NONE
JRI60_RS11375 2738483 .. 2738497 -  -2.7  -3.14132   TCCGTCTTCCATCAA               CCGGC GCGGT GTCGG               AGGATTGCCTCGGCG  44 7
JRI60_RS11370 NONE
JRI60_RS11365 NONE
JRI60_RS11360 NONE
JRI60_RS11355 NONE
JRI60_RS11350 NONE
JRI60_RS11345 NONE
JRI60_RS11340 NONE
JRI60_RS11335 NONE
JRI60_RS11330 NONE
JRI60_RS11325 NONE
JRI60_RS11320 NONE
        asnB NONE
JRI60_RS11310 NONE
JRI60_RS11305 2725008 .. 2725030 -  -3.3  -2.74144   TCTCCACCTCCAAAC           GGTTTGACG AGGCG CGTCATGCC           CGGTGCGCGGCTCGG  40 111
JRI60_RS11300 NONE
JRI60_RS11290 2721204 .. 2721218 -  -6.4  -2.52676   GACCGGGTCAATCGA               GGAAAC GAC GTTCCC               AGCGGCGCAGATCCT  45 3
JRI60_RS11275 NONE
        actP 2716490 .. 2716514 -  -4.2  -4.07568   CGGGCCCGCCGAAAA          CCCCGTGAAC TGGAG GTTCACCGTG          GAGCGCACGACGCTG  63 471
JRI60_RS11250 NONE
JRI60_RS11245 NONE
JRI60_RS11240 NONE
        fabF 2709264 .. 2709274 -  -8.2  -3.31144   GCTGGAGGTGGAGAA                 CGGC GAG GCCG                 AGGTGCGCCCCGGAG  58 232
        htpG 2705635 .. 2705674 -  -2.6  -3.65046   GGGGCAGCTCAAGAA  GGACTGGCTCCCCCTGCTG CGC CTGGCGGTGGAG-CAGGCC  GGTGGGGACGGGATG  51 482
JRI60_RS11215 2703505 .. 2703515 -  -2.4  -2.55847   AAGGTGGACACTAAT                 GCGC CGT GCGT                 GTTCCTCAAGGCTGG  38 31
JRI60_RS11210 2702708 .. 2702757 -   -12  -3.31144   CTGGGACTGGCACAA GC-GGACGCCGGGGCGGCTCCTCC ACGT GGTGC-GCCGCCAGGGCGTCCCGC TGGCCTACGTCTTCG  67 116
JRI60_RS11195 2699310 .. 2699338 -  -2.9  -3.21962   ACAGCAGCAAGGGAA        GGAGGAGCGGGAG TCT CACCGGGTTCTCC        AAGGCGCGGAACGGG  46 42
JRI60_RS11190 NONE
JRI60_RS11185 2698435 .. 2698484 -  -8.3  -3.31022   AGCAAAGAGGACCAA CCGCGCGAAAGGGTAGGGCGGGG TACG CCCCGCTTCAGCGCTCGGCGCGG CGCTGGAGCTTCACC  58 10
JRI60_RS11180 2697927 .. 2697949 -    -9   -4.5442   GCGCGAATGAGAAAA           CGGCGCGGAG GGA CCTCACGCCG           GACGGCGCGGGCTTC  84 44
JRI60_RS11175 NONE
JRI60_RS11170 NONE
JRI60_RS11165 2694283 .. 2694313 -  -5.2  -3.02511   GGGATTGTCCGAATA       CTCCGGCTCCGACT TCG AGACGGTGACGCAG       GGCTTCCTGATGCCG  47 225
JRI60_RS11155 2692371 .. 2692390 -  -3.5  -3.13403   CGCCGGGCAGGAACA            GGACGTG GTGGTT CATGTCC             ACCATCCTCGCCAGG  45 55
JRI60_RS11150 2691758 .. 2691775 -  -9.9  -2.87026   CATACCGACACCATA             TGCAACC TGGA GGTTGCA              TGTCAAGGATGGGCG  59 28
JRI60_RS11145 NONE
JRI60_RS11140 2691201 .. 2691235 -  -9.8  -2.82519   TGAGCACATCAATGA     CTGACGGCCGAGGGGC TCA GCCCCTCCACCAGCTG     AAGTCGAGCGGCTTG  59 7
JRI60_RS11135 NONE
JRI60_RS11130 2687713 .. 2687724 -  -7.2  -2.64099   TCCTTCCAGGAGAAT                GGCC TGGA GGCC                 GTCCTGCGGGAGCGC  48 390
JRI60_RS11115 NONE
        asnB 2682971 .. 2682984 -  -8.1  -3.45118   GGAGCCGATAAGCAA               CCAGC TCAT GCTGG                CGTGGGCTCGCCCCG  58 88
JRI60_RS11100 NONE
JRI60_RS11095 2672870 .. 2672880 -  -8.2  -2.83449   ACACCTGGATAATGA                 CCGC CCT GCGG                 ATGCCGTTGCTCCTC  54 39
JRI60_RS11090 2670550 .. 2670570 -  -4.6  -3.85698   TGTTTTTTGGAGAAA           GGGTGC-GC GGAT GCTGCTCCC            GTCTGTCCAAGGAGT  58 127
JRI60_RS11085 2667056 .. 2667074 -  -6.7  -3.34398   CGGGTTTCCGAAACA            CCCTCTGG AGAA CC-GAGGG             CCGCTCCAGTGCACA  54 367
JRI60_RS11075 2664588 .. 2664600 -  -4.7  -3.28924   GAGTTCCGGCGAGAA                CGTGC CCC GCGCG                AGGCGCTGGCGCATC  49 154
JRI60_RS11070 2663361 .. 2663374 -  -4.5  -3.32844   CGCGCTACCGGACAA               CG-CCG GCT CGGTCG               AGCTGTACGTCTCGC  49 256
JRI60_RS11055 2658918 .. 2658932 -  -2.7  -3.32844   GTGCCGACCCTACAA               CTGCC CAACT GGCTG               GTGCACCTCGCCGCG  45 223
JRI60_RS11040 2655513 .. 2655532 -  -4.8  -3.17392   GAGGCGCGAACGCAA            GCCGAGCG GGCG CTCGCGGC             GTTGGAACGGGACAG  47 447
JRI60_RS11025 2649454 .. 2649467 -  -2.3  -3.18264   GTCGCCACCGAGGAA               CGGTG TGCG CACGG                CGATGCACATTCGTG  42 62
JRI60_RS11020 2648658 .. 2648673 -  -3.2  -3.61398   CGCTCTCGCCAACAA              CGCC CGCTCGGT GGCG               TTGGGCATGGGTGGC  53 433
JRI60_RS11010 2647749 .. 2647761 -  -6.2  -3.63515   GTCCACGGTGAACAA                GCCC CTGAC GGGC                AACGAGAACTGCACC  59 73
JRI60_RS10995 NONE
JRI60_RS10990 2642961 .. 2642972 -  -7.2  -2.64155   GCGCGCTCAAATCGA                CGCG CCAA CGCG                 CTCACGGAGTTCAGT  47 36
JRI60_RS10970 2638566 .. 2638579 -  -2.3  -2.85351   GCGGGTCAGAGGAGA               TCGGA GAAG TCCGG                GGCGCGCGCGCTCAG  40 2
JRI60_RS10965 2637068 .. 2637098 - -10.3  -4.41353   GCAGACATACGAAAA       CGCCACCTGCGAC GAGCT GCCGCGGGTCGCG       TTCTCGAGCCTTACG  88 36
JRI60_RS10955 NONE
JRI60_RS10950 2634362 .. 2634384 -  -4.7  -4.18494   GAGCCGGAGCGAAAA           GGAACGGGC GTGGG GCCCCTGCC           GGAGGGGCGGTGTCT  66 68
JRI60_RS10945 2633840 .. 2633850 -  -4.6  -3.14602   CTCAGCGCAGGAAGA                 CGGC GAG GCCA                 ACCACCGCCCCGTGT  47 1
JRI60_RS10940 NONE
JRI60_RS10935 NONE
JRI60_RS10930 2630769 .. 2630792 -  -7.4  -3.44146   GCCGCTCAGAACGAA          GCCCTCGCCAC CTC GTG-CGAGGCC          ATCAACTACACCCTC  59 278
JRI60_RS10915 NONE
JRI60_RS10910 NONE
JRI60_RS10905 NONE
JRI60_RS10900 2623327 .. 2623337 -  -2.4  -3.97307   GCGATTGAAGAACAA                 CCTC GCC GGGG                 CCTTCAGCTTCCTCT  57 509
JRI60_RS10890 2620899 .. 2620914 - -10.4  -3.28684   AAGCACGTAGACGAA              GCAGCC GACC GGCTGC               ACGAGGCCTTCGCAC  64 283
JRI60_RS10880 NONE
JRI60_RS10875 NONE
JRI60_RS10870 2618942 .. 2618952 -  -6.8  -3.17075   TGCGTGGCAAGCTAA                 CGAG GCG CTCG                 AGGGGCTCCAATCAG  52 81
JRI60_RS10865 2618138 .. 2618160 -  -6.2  -3.30124   GTTCATCTTCGAGAA           CCGACTCATC GCG GACGAGCCGC           TGACGCTCCAGGACA  53 196
JRI60_RS10855 2614546 .. 2614584 - -10.8  -3.68619   GCGAAGCCAGCGAAA   CCCACCCCCTGAGGTCGA CCC TCTCCCTCTGGGAGGGGG   CCGGGGTGAGGGAGC  73 151
JRI60_RS10845 2612713 .. 2612728 -  -3.2  -3.28712   TGTCGCGCCTGATAA              CCGATGC GAT GC-CCGG              GCGAAAGGGGAGGGC  46 71
JRI60_RS10840 2611455 .. 2611467 -  -6.2  -3.14211   ATGCCCCGGGACGAA                GGGG GACCA CCCC                TGAAAAGCTCAGGTC  51 34
JRI60_RS10835 2609994 .. 2610022 -  -2.3   -3.5535   GAAGCCAAATAAAAT        TCCGCGCGAGTGT AGG AGACTCAGGAGGA        GGGGTAAACTTCGCG  48 62
JRI60_RS10830 2604528 .. 2604554 -  -7.8  -4.09963   GCTGAACAAGAAGAA         GGAGGCGGCTCC CGC GGCGGCGGCTCC         GGCCAAGGCGGCCCC  69 176
JRI60_RS10815 2601267 .. 2601279 -  -6.2  -2.54371   AAGTATCTGAACTGA                CCGC GAGCG GCGG                AGGGCTCAGTTGGGG  46 31
JRI60_RS10785 NONE
JRI60_RS10780 2593038 .. 2593052 -  -2.1  -2.66979   ACGAGAATCTAGAAT              CG-GAC ACCC GTCGCG               GCCTACCCCCCGCAC  38 93
JRI60_RS10775 2588986 .. 2589013 - -10.5  -2.52623   CCCGGCGGAGAAGAT        CCGGCGCGTGC TGGGCT ACACGCCCCGG         TACTCCTTCGAGGAG  56 71
JRI60_RS10765 2587308 .. 2587343 -  -2.3  -3.32844   TGGCGCACCGGACAA    CCTCTCCGGCGCGCCG GGGCT CGGC-CGCCCGGTCGG    GTGAGGGGGGACTAC  44 37
JRI60_RS10760 2586786 .. 2586819 - -13.1   -3.4052   GGCGAATGCAATGAA     GCGAGCCCCCGCA TGTCGCTC CGCGAGGGCCCGC      TGACCGCGCGCGGCC  75 46
JRI60_RS10750 2585614 .. 2585632 -  -8.8  -2.80699   CCCCAACGAACAGGA             CGCGGC GCTCCAT GCCGCG             GCGGCCTTCCAGCCC  51 143
        pruA 2582886 .. 2582899 -  -3.7  -2.91264   GGCGCCAGGGATAGA               GGGGC TTTC GCTCC                GGGTGCGTGCCCCGT  43 150
        deoD 2582084 .. 2582133 -  -8.4  -3.02263   AGATCCTCCTCAAGA CGCTGCCGGCCGTGCTG-AGGCGC ACCG GCGCCTACTGAGCGGC-GGCCACG TCCAGGGCCAGCTCG  55 7
JRI60_RS10725 2578759 .. 2578781 -  -2.6  -3.30124   GGCCAGTGGGGAGAA          CGGGG-GCG CATACC CTCACCCCG           TCCCTCTCCCAGGGG  44 66
JRI60_RS10720 2577239 .. 2577264 - -11.8  -2.60079   CGAGTGGACAATCCA         CCTGCCTCCG AGTGCA CGGAGGCCGG          GAGTAGCTCCTCCAC  61 98
JRI60_RS10715 2576296 .. 2576315 -  -2.8  -3.09516   GCCTTCACGATGGAA            GCGGAAGCC CCC GTCTT-CGC            CCATCGTGCCGAGTT  44 69
JRI60_RS10685 NONE
JRI60_RS10680 2568208 .. 2568220 -  -3.3  -3.31144   CGCCCAGGTGTACAA                GTCGA TCA TCGGC                CAGCTCCTCTCGGGT  46 51
JRI60_RS10675 2567467 .. 2567512 -    -4  -3.28712   GCTCGCCGGGGAGAA GT-GGTTGGCATGGCCCGACGCG GAG CGCGTCGGG-CAT-CGGGCCGAC AGATACAGGCAGTGA  47 52
JRI60_RS10660 2564849 .. 2564885 - -19.3  -2.50816   TGGGCACGCAGGAAT    TCCTCATGGGCGCGCCG TAG CGGCGCGCCCGTGGGGG    GCGCCACCGTGCCTC  93 39
JRI60_RS10645 2559748 .. 2559779 - -12.2  -2.90992   AACCCCTTGAAATCA      GGCCCGCCGGGCTGT CGA AC-GCCCGGCGGGTG      TACCGGATGGGACAG  66 60
JRI60_RS10640 2558638 .. 2558677 - -23.6  -4.08767   GTGAGCCTTCGAAAA  GACGACCGGGGACACGGC GCGA GCCGTGTCCCCGGTCGGG   AGTCCCACCTGAAGG 100 68
JRI60_RS10600 2547559 .. 2547572 -  -5.9  -3.71848   CGTCGCCATCAACAA               GGACC CCGA GGCCC                CCATCTTCCAGGTGG  57 193
JRI60_RS10580 2542103 .. 2542134 - -18.1  -3.33696   TCGCCCGGCAACGAA      GAGGCCACCGC-CC GTACT GGCGCGGTGGCCTC      GTCGATTCAGCGCGG  89 52
JRI60_RS10570 2539764 .. 2539801 -  -3.4  -3.36327   GCAGGCGATGCAGAA   CGTCGAGCACACGCC GGAGCTGGA GGCGCA-GCTCGACC   AGACGGTGGCGCAGG  47 414
JRI60_RS10510 2529145 .. 2529183 - -30.4  -2.70932   CTGGTGCCGGAACGA   CGACGGCGGATGGGCCCG AGC CGAGCCCATCCGCCGCCG   TGAGGGAAGAAGTCC 100 49
JRI60_RS10500 NONE
JRI60_RS10490 2525066 .. 2525111 -  -5.9  -3.13522   ATCCTTGGATGAAGA GGCCCCAGTCGCTGGACGCGGG TGA CTCGGGTTCAACC-CGGGGGCC CTATACCCTCACCCC  51 123
JRI60_RS10455 NONE
JRI60_RS10450 2516713 .. 2516735 -  -3.5   -3.2891   TTTGAGAATCAAAAT          CAGGAT-TCG AGAA CAACATCCTG           CAAGGTACCCCGAGA  47 81
JRI60_RS10445 2514595 .. 2514637 -  -6.8  -3.08798   AGCTGGGAGCGAAGA GCGCGAACGACTCGAACAGC TCG GCCGCCTGAGCCTCTCGCGG GCCTTGCCCAGGTTC  52 191
JRI60_RS10405 NONE
JRI60_RS10400 2503082 .. 2503094 -  -6.2  -3.86194   AACCCCCGTTACAAA                CGCC ATAAA GGCG                GGGGTTGAATAGTCG  62 82
JRI60_RS10395 2501418 .. 2501434 -  -2.1  -3.63515   GCTCACGGGGAACAA              GCAGTAC CTG GACCTGC              CGGAGAGCTACGTGT  51 381
JRI60_RS10385 2497928 .. 2497956 -  -7.5  -3.30124   CCTCATTCGTTACAA       CCAGGGC-TTCC GGAACG GGAACACCCTGG        TCGTGGATGCCTTCC  55 256
JRI60_RS10375 NONE
JRI60_RS10370 2493808 .. 2493832 -  -3.4  -2.82516   GCCTGTACCACGACA          CCCACGCGCA TGCGG TACCCGAGGG          GCCGCTGGCCCTGTT  40 193
JRI60_RS10355 2491507 .. 2491530 -  -5.9  -3.18023   GGAGGACGAGGAAGA          GCCCGAGGA GCCTCT TCCCCGGTC           TGGATGGCGGGGCGT  51 51
JRI60_RS10350 2490439 .. 2490455 -  -9.4  -2.75957   GATCAACTTCAACGA              GCTGCC CCTCT GGCAGC              GGCGTGGCACGGGCA  55 223
JRI60_RS10325 NONE
JRI60_RS10320 2483667 .. 2483701 -    -7  -2.81547   GGTGGACATGAATGA    CCGCGGGCC-GCCGC GCTCCT ACTGCCGGCCCCCGG     AGGGAGCACCTCCGC  50 54
JRI60_RS10295 2478386 .. 2478406 -  -7.5  -3.05384   CCGGTCCGGATGGAA            GGCCAGTCC AAG GAACTGCCC            ACCACGGTGGCCTTG  52 150
        fusA 2468644 .. 2468675 -  -5.9  -3.28712   CGGGTTCCTGGACAA      CCTCCGG-GCTG TCCCTACCC CAGCTCCGGAGA      AAGTCTTGTCGTCCA  53 500
JRI60_RS10260 2467441 .. 2467459 -  -2.3  -3.99153   CTACCAGAAAAAAAG            GAGC-CCG GTGG CGGCGCGC             ATGAAGGGGGGATGA  56 41
JRI60_RS10255 2466067 .. 2466080 -  -3.7  -2.91276   GTTCTGTCCAGAAAT               TCCGG ATTC CCGGT                TTTATGAGGCAGGAC  43 166
JRI60_RS10250 2463858 .. 2463874 -  -7.9  -3.21395   AGGGCGTTCAGAAGA              CCTGGAC TTC GGCCAGG              CTGAGCGGATCGGGT  54 1
JRI60_RS10245 2461826 .. 2461838 -  -6.2  -3.06492   CCACCCACTGCAATA                CGGG TATGG CCCG                GGCTCTCCGCTGCAC  49 436
JRI60_RS10220 2456262 .. 2456287 -  -8.2  -2.81547   CGGGCACATGAAGGA         CTCGGAGCCC TAGTTG AGGCTCCGCG          AAGCCGGTGCCGGAT  54 217
JRI60_RS10195 NONE
JRI60_RS10190 NONE
JRI60_RS10185 2447117 .. 2447127 -  -8.2  -2.53715   TGCACCATCATCAAC                 CCCG TGG CGGG                 CAAGACCTACGTCAT  50 337
JRI60_RS10170 2444749 .. 2444766 -  -6.9  -2.54841   AACGGGAAGGAAGAG             GGGCGGC GACT ACCACCC              GGTCGGCGGCACCGG  47 17
JRI60_RS10165 2443852 .. 2443879 - -18.4  -2.52676   CACGGCGGGAAGGGA        CCGGGGCTGGCG CGGA CTCCAGCCCCGG         TCAACCCCACCGCGT  87 43
JRI60_RS10160 2442763 .. 2442779 -    -3  -3.50853   CCGGCTCAACGACAA             GCG-GTT CGAG AACGCGC              TGTCGGCGGAGGCCG  50 327
JRI60_RS10150 2439719 .. 2439745 -  -2.1  -4.19238   GCCGCAAGCTCAAAA         TCCACAGGGCT GACGT AGCCCAGCGAC         GAGTGCCGTCTTTGG  62 456
JRI60_RS10135 2436975 .. 2436994 -  -4.9  -2.85351   GGGTCTGACATCAGA            GGTAGGG TCACTC CCCGACC             GATTGGGGCGTCGGC  44 13
JRI60_RS10130 2436208 .. 2436220 -  -3.3  -2.94411   AGGGTGTCAAAGAAT                TCGAG CGA CGCGA                CCCGGCACGACACGC  42 127
JRI60_RS10125 2434412 .. 2434427 -  -6.8  -3.33261   GGGCAAGCGCGACAA              GGCGGCC GTA GGC-GCC              ATCAAGCGTGCGGTC  53 519
JRI60_RS10110 2431647 .. 2431659 -  -6.9  -3.29263   AGATGGTCCTCAGAA                CCGGC GAT GCCAG                CCCGGGGTTTGTCGT  53 521
JRI60_RS10100 2425772 .. 2425791 -  -5.7  -3.08798   AGGGGCTACTCAATA            GGC-AGGC CCTGC GCCTCGCC            ATGGCCAGCGCCGGG  49 70
JRI60_RS10075 2418853 .. 2418887 - -14.3  -2.90723   CGAGGCCGAAGCAGA    CGC-GGCTGCTGCTCC CTCC GGCGCAGCAGCCCACG     TTCCGGGACGGGGAG  68 350
JRI60_RS10065 2417362 .. 2417381 -   -15  -4.37886   TCATTCGTGACAAAA            CGTGCGGG GAGG CCCGCACG             TTTTGCATAGTCGCC 100 86
JRI60_RS10060 2416939 .. 2416972 -  -2.3  -3.48378   GAAAGAGGAGGACAA     CGGCGGCTCCT-TCCA GGC CGGAGAGGACACTCCG     GCTGGACCCCCCGCT  46 80
JRI60_RS10055 2415938 .. 2415968 -  -4.6  -4.41494   TACCCCTAATCAAAA       GGCGTACCAACC GTCTGTT GGTTGGCGGGCC       CAATGAAAACAAGGG  69 138
JRI60_RS10050 2412834 .. 2412856 -    -9  -2.78384   GGTGGGGCCACCATA           TCCGCCCGGG GCC CATGGGCGGA           AGGTGCCCCACCCCC  55 53
JRI60_RS10045 2411613 .. 2411624 -  -7.2  -3.18582   CACGGGAGTGAGCAA                GGGG CTCG CCCC                 CGTGCTCGGCCAGTA  52 70
JRI60_RS10035 2408280 .. 2408305 - -10.5  -2.58544   GCGGATGTCGAGAAG         CTCAACGGCCAG GTC CTGGCCGTC-AG         TACGGATGACAAGGA  56 394
JRI60_RS10010 2404061 .. 2404077 -    -5  -3.56862   AGAAACTCCGGCAAA              CCGCTC GATCA GCGCGG              ATGTCCTCCGTGCTC  52 198
JRI60_RS10005 NONE
JRI60_RS10000 NONE
JRI60_RS09995 2400897 .. 2400909 -  -6.2  -2.70932   CTCGGCGTGGAACGA                GCGC ATGCG GCGC                TTCCTGGGCGTCACC  46 349
JRI60_RS09985 2398603 .. 2398642 -  -4.1  -3.56092   GGACCATGGCGCAAA  CGGGGGTGTCCC-TCTGG TCGTT CCAGACGGGCCGCCTCCT  GGGGGCGTCCCCCCA  51 522
JRI60_RS09975 NONE
JRI60_RS09970 2391886 .. 2391903 -  -3.3  -3.53012   GGTCGGCTGTGGAAA             CGC-GACG ATG CGGCTGCG             CACGGGCGACCGGGT  50 129
JRI60_RS09935 2382097 .. 2382108 -  -5.8  -3.24825   GGACGCCAACGAATA                GAGC GGAC GCTC                 ACTCGGGCAGGAGGG  51 24
JRI60_RS09905 NONE
JRI60_RS09900 2352832 .. 2352861 -    -7  -3.54653   ATCTCCACGATACAA       GTGGGGCCACGGC CAAAT GCCG-GGCGCCCC       TATGTGAGTGCCGGG  58 65
JRI60_RS09895 2351770 .. 2351794 -  -5.6  -4.18018   GGCTGGGAGCCAAAA          CCCGCCGATT ACAGG AAACGGCTGG          TGGCTATGTCAAGTC  69 110
JRI60_RS09865 2346374 .. 2346384 -  -6.8  -3.28712   GGCGCGGCTGGACAA                 GCAC CGG GTGC                 TGCAGATCCTCATCA  53 346
JRI60_RS09855 2340034 .. 2340085 - -11.4  -3.25823   CCCGTGGGAGATGAA CTGGCGGCAGCCGGCGCTGGCCATC AAC GCCATCCAG-GCCAGCAGCCGCAAG GACGCGCGCAACATC  65 478
JRI60_RS09845 2338584 .. 2338594 -  -5.4  -3.17212   CCAGCACTCGACCAA                 TGGA ATC TCCA                 ATCCAGTAGTTCGAC  49 59
JRI60_RS09840 2337671 .. 2337692 -  -4.3  -3.17723   CGAGCTGGAACTGAA           GGCGGTC GTGGTGGT GGCCGCC            ACCTGGTTCATGCTG  47 54
JRI60_RS09835 2335554 .. 2335580 -  -5.7  -3.29471   GGGCTACGACATCAA         CGCGGGAGCGT TGGGG ACGGCCCGGCG         CAACGCGCGGCGGGC  51 345
JRI60_RS09825 2333682 .. 2333693 -  -5.8  -3.21099   TGTGTCGATTACGAA                TGCC GCAA GGCA                 TGCGACCCGCGGGCC  49 130
JRI60_RS09815 NONE
JRI60_RS09810 2329680 .. 2329697 -  -8.3  -3.14229   ACAGGCGGAGCAAGA             CGCGGCG TGGG CGGCGCG              TGCGCGGCCGCCGGT  56 78
JRI60_RS09790 NONE
JRI60_RS09785 2326089 .. 2326099 -  -4.6  -3.32844   GGTGTCAGCCTATAA                 CGGC CCG ACCG                 TGGACCCGCCAGCCC  49 54
JRI60_RS09780 NONE
JRI60_RS09775 NONE
        clpA 2322065 .. 2322097 - -15.6  -3.27298   TCTGGGAAGGACGAA     GGGCCAGG-AGAGGG GAGA CCCTCGACCTGGCCC      TTGTCGTTTCTGGGG  80 168
JRI60_RS09725 NONE
        odhB NONE
JRI60_RS09715 2308382 .. 2308410 - -13.8  -4.32857   CCCCGCAAAGAGAAA       GGCCCGGCTCTCC TCGT GGGG-GCCGGGCC        TTTTTCCGAGGCCAC 100 69
JRI60_RS09705 2305255 .. 2305269 -  -2.1  -3.15579   GGAAGTCGGGATTAA              GGCGGA TCTG TCC-CC               AGCAACTCCCGGAAG  42 7
JRI60_RS09700 NONE
JRI60_RS09695 NONE
JRI60_RS09690 NONE
JRI60_RS09685 2301342 .. 2301355 -  -2.3  -3.48276   CGCCCTGGGACACAA               GGAGG CGCG CTTCC                TGGTGCCGCTGCTCC  48 476
JRI60_RS09670 2297989 .. 2298003 -  -3.5  -3.33261   GGCGAAGCGTGACAA               GATCG TCACG CGACC               GGGCTGGGAGCGGGT  47 210
JRI60_RS09660 NONE
JRI60_RS09655 NONE
JRI60_RS09650 2293658 .. 2293673 -  -4.6  -3.04398   GCGTTGTCCGAAAAG              TCCGGG GCTG CCGGGA               TGGCGCGCTGCGGGG  45 162
JRI60_RS09645 NONE
JRI60_RS09640 NONE
JRI60_RS09635 NONE
JRI60_RS09630 2287132 .. 2287148 -  -6.5  -3.40403   CTCGGGCCAGCACAA              CCTGTCC TTC GGACACG              GCATCCACTTCTGCC  53 250
        trpD NONE
JRI60_RS09580 NONE
JRI60_RS09575 2276859 .. 2276871 -  -6.2  -2.74144   GTGTCACTCCCAAAG                CGCG GTCTT CGCG                GCGCGTACGAAGGCA  47 1
        trpB NONE
JRI60_RS09565 2274801 .. 2274838 - -14.7  -2.63347   CCTAATCAGAACTCA   GGGCAAGGCGGGGCCCC CCAC GAGGCCCCACCCGGCAC    GGCTCAGCGCTTCAA  71 29
JRI60_RS09560 2274506 .. 2274520 -  -4.2  -2.78384   GGGCGGTTCAGGACA               GCCC GTACGGA GGGC               CTACTTGGTAGTGGG  41 26
JRI60_RS09555 NONE
JRI60_RS09550 NONE
JRI60_RS09545 2268502 .. 2268543 -  -3.5  -3.71848   GGTCTTCACCAAGAA TGGTCTGGTGCGGTCCACCA TCC TGGTGGACGGCTTC-GTCCG CGGAATCTGGCGGAT  53 210
JRI60_RS09530 NONE
JRI60_RS09525 2261251 .. 2261287 - -11.5  -3.02043   AAGCTCGTTTCAACA    GCAGGTCCACCCTCCTG GGC CAGAAGGGTGCGCCTGG    TTCAGTACGCCCGGT  65 27
JRI60_RS09520 2257785 .. 2257796 -  -2.2  -3.01712   GCTCTCCGCCGAACA                GCTGG CCA CC-GC                CGTGCGCGCCGTGCC  41 119
JRI60_RS09510 NONE
JRI60_RS09505 NONE
JRI60_RS09500 NONE
JRI60_RS09495 2251822 .. 2251835 -  -4.5  -3.35679   CGCGCGGAGGGAGAA               GC-CGG GGT CCGCGC               TACCCTCACCCCCGC  51 73
JRI60_RS09490 2249968 .. 2249998 -  -5.5  -3.29544   ATCATGAAGAAGAGA      GGGCCCCCTCAT-GA TGC TCGATGAGGGG-CGC      TTATCGGATGATGCT  51 517
JRI60_RS09480 2248813 .. 2248851 - -11.5  -4.08216   GCACGCTCTTGAAAA   GCACGAGCGCCCGGCGG GTCGG CCGCTGGTCACCCGAGC   AGCCGCGCGGAGTCC  82 16
JRI60_RS09475 2247952 .. 2247967 -  -8.2  -3.05844   CGGTGCACGGCAAGA              CGGCGG CCAT CCGCCA               CGAGAACCGCGGCCT  54 318
JRI60_RS09440 2241423 .. 2241456 -  -6.6  -3.84271   GGAGAAGAGCAACAA     GATGATGGACGCGC CGACCT GCGCGAACCTCATC      CTGCGCGCCATGGAG  62 204
JRI60_RS09430 2240038 .. 2240058 -  -6.1  -2.87132   TGGGCTCCGGACAGA           CGCGACCG GGAGGA CGG-CGCG            GCTGGCTCGGAGACG  48 347
JRI60_RS09425 NONE
JRI60_RS09420 NONE
        nrfD NONE
JRI60_RS09410 NONE
JRI60_RS09405 NONE
JRI60_RS09400 NONE
JRI60_RS09395 2231904 .. 2231920 -  -5.8  -2.91695   TCTACCGCGAAACTA             CGGCTGC TGGG GC-GCCG              GCTGCGGCGCGGGGG  46 6
JRI60_RS09390 NONE
        coxB NONE
JRI60_RS09380 NONE
JRI60_RS09375 NONE
JRI60_RS09370 2227146 .. 2227177 -   -23  -4.05788   CGCCCGCAAATGAAA      CGCGGCGCCGGGGA AGGG TCCACGGCGCCGCG       AGGGGAACGTCGAGT 100 51
JRI60_RS09365 NONE
JRI60_RS09360 2225805 .. 2225815 -  -8.2  -2.62184   GCCCGGGGGATATCA                 CCCG GAG CGGG                 CCTTCCGCATGGAGG  52 12
JRI60_RS09355 NONE
JRI60_RS09350 2223803 .. 2223833 -    -4  -2.73364   CTTCGACGGCAACGA      GGAGCGCGT-GCGC GACGT GCGCGACG-GCTCG      GCCGAGGGCCTGCAC  42 146
JRI60_RS09340 NONE
JRI60_RS09335 2220301 .. 2220313 -  -3.3  -5.11033   GACAATGGCAAAAAA                GCTGG CAA CCAGG                CTGGGAGAGAGCGCA  87 388
JRI60_RS09325 2219690 .. 2219705 -  -5.4  -3.23598   CAAGGAAGGCACCAA              GGACGAG TGT CTCG-CC              TACATCAAGGAGGTG  49 113
JRI60_RS09310 2214999 .. 2215012 -  -2.3  -2.75183   AGGGCGATGGAACGA               CCTGT GCGA ACTGG                TGCTCGGCCGAGGCG  39 193
JRI60_RS09295 2210953 .. 2210967 - -12.8  -3.14878   GCTGGGAACGGAAGA               CCCGGG GCC CCCGGG               GGCGCTCAGGCCGCG  69 31
JRI60_RS09290 2209537 .. 2209554 -  -7.7  -2.79183   CGCAGGTGTACGACA             CGCCGCAG GTG CTG-GGCG             TGGTGCGCGGCCAGG  49 468
JRI60_RS09275 2206370 .. 2206397 -  -4.1  -3.17763   TCTACACGCCATCAA        CGTCCGCTGTC TCTGGG GACATCGAACA         GTCAAGCCGCCTTCT  45 27
        pheA NONE
JRI60_RS09265 NONE
JRI60_RS09245 2200845 .. 2200876 -  -2.3  -3.36273   GCGGCTCAAGAGGAA     GGTGTC-CGGGCTCA CCCC CGAGGCCGCGA-ACC      AGCTCCTGCGCTACC  45 352
JRI60_RS09235 2197399 .. 2197419 -  -2.6  -2.64695   CGATCAGGAAGGAAC           GCGT-G-AGG CGG CCTACCACGC           CGTGATGCGGCTCAT  38 89
JRI60_RS09200 2187617 .. 2187643 - -18.8  -3.09492   TTCCCAACGCGAAGA         GGCCCACCCTCA TCC TGAAGGTGGGCC         CTCCGCTCATTCACC  90 76
JRI60_RS09195 2186352 .. 2186377 -  -6.7  -3.14132   TGGCGCCCGCATCAA         CCTGTCGGGCC TCAC GGCCGACCAGG          ACTTCTCCAGCCCCG  51 520
JRI60_RS09185 2182278 .. 2182313 -  -2.5  -4.85782   TGCTTCAAAAATAAA    CCCTGGAAGTAG-AGG GGATG CCTACTACGTCTCGGG    TGCTGAAAGGTATTG  76 462
JRI60_RS09180 2176643 .. 2176655 -  -4.7  -3.03635   CAAATCCTGTGAAGA                CGCAC CCT GGGCG                TGAGGACGAGGCGCG  45 84
JRI60_RS09175 NONE
JRI60_RS09170 NONE
JRI60_RS09165 NONE
JRI60_RS09160 2172325 .. 2172344 -  -7.8  -3.28712   TCTCCTCCGCGAGAA            GCCTCTCC CCCA GGAGACGC             ACGCCTTCCCCATCG  55 518
JRI60_RS09125 2164778 .. 2164809 -  -2.9   -3.2794   CCTCATCCAGATCAA      CGGTGACTTCCCC CTCTTC AGAGAGGTGACCG       ACTACTGGGTTGCAA  44 351
JRI60_RS09115 NONE
JRI60_RS09110 NONE
        tnpB NONE
JRI60_RS09100 2159593 .. 2159604 -  -3.6  -3.65224   ACCGCAGTGCAACAA                GCAC CGCG GCGC                 CCGGTCAGCTCGAGA  54 67
JRI60_RS09095 2159139 .. 2159176 - -12.1  -3.73873   TGAAACGTAAGAGAA   GAGGGCGAACTTTCA-TC GTG GACTGGAAGTCCGCCCCC   TCGACCGCTACTGCG  77 162
JRI60_RS09085 2156442 .. 2156458 -  -9.4  -2.78384   TGGCGCGGCAGGAGA              CTGGCG CGTTT CGCCAG              ATGGCGGACTGGAAC  55 420
JRI60_RS09080 NONE
JRI60_RS09075 NONE
JRI60_RS09070 NONE
JRI60_RS09065 2152641 .. 2152675 -  -6.2  -3.31726   CCGCCGCATACAACA     CCGTCCCCTCCGGCTG CCT CCGCCAGTGGGAACTA     CTCGGCCGGGGTAGT  53 23
JRI60_RS09060 2151576 .. 2151618 - -13.3  -3.06796   CTGCATCCTATGGAA GGGCCACGACGGCCCGCAC AGTCG GTTCGGGAAGTCGTGGACC GACGCCGAAGGCTAC  66 371
JRI60_RS09050 2149441 .. 2149479 - -10.9  -3.44051   CCCCGACCATCAGAA  GGGCGCGGAATCCTTGGA GAAA TCCTCGGG-TCCGCGCCC   TTCGTCTTTCCGCGA  68 262
JRI60_RS09045 2147509 .. 2147519 -  -2.4  -3.61654   CACAGGCATTGCAAA                 TGCG CAC CGCG                 AGGCTTTGGCTCACG  48 87
JRI60_RS09040 2144549 .. 2144565 -  -2.1  -3.78934   GCCGCTGGACAACAA              TCTGGCG GAG CGGCAGC              TGCGCGACATGGTGG  55 400
JRI60_RS09020 2142264 .. 2142305 -  -2.1  -3.14132   TCTCCCCCTCAGGAA GTCTCATCCGCGGGCCGAAC AGG GGCCCAC-CGGGGATGAGCC GGTGAGGGAGAAAAT  42 152
JRI60_RS09015 2140551 .. 2140579 -   -16  -2.53263   CCTATTTGGAAGTCA        CGGTGTCGGCCC GACGA GGGCCCACACCG        GGGAGAGCCCGTGAC  73 82
JRI60_RS09010 2139056 .. 2139068 -  -4.7  -3.28269   AATCGTGAAAGTCAA                GCCGG GTT CTGGC                AATTCATGGCTCTCG  49 104
JRI60_RS09005 2138360 .. 2138385 -  -4.6  -3.31144   CTCCGATTCCGAGAA         TCAGGACCCG ACGGCG CGTGTCCTGG          TGCACGTGTTTGTGT  49 377
JRI60_RS08985 2130096 .. 2130115 -  -9.2  -3.21925   AGAGGCCAGCAGCAA            CCTCGCGG CAAG CGGCGAGG             GTTCACCTCCGGCGG  61 123
JRI60_RS08975 2129180 .. 2129192 - -10.5  -3.14564   GGACGGCGGCATCAA                CGCCG AGA CGGCG                CGGCGGGTGGTGGAA  62 133
JRI60_RS08965 2126827 .. 2126870 -  -4.4  -4.20042   AGGAACAGGGGAAAA CCCTCACCCCGACCCTCTCCC AGA GGGAGAGGGCCAGACCT-GGT TCTCGACCGTGTAGG  66 88
JRI60_RS08935 2119961 .. 2119976 -    -6  -3.05963   ATGGCGACGTGAAGA              CGCCCG CCGA CGCGCG               CCGGATGCTGGAGAC  47 380
JRI60_RS08925 2117606 .. 2117618 -  -4.8  -2.56181   GTAGAACACGAAGAG                GCAC ATCAG GTGC                ACGCCGATGAACGGG  42 182
JRI60_RS08920 2116664 .. 2116684 -  -8.2  -2.62616   CCACCCCGGAGACTA            CTGGCGCT TGAGG AGCGCCTG            GGGGGACGGCGCGGA  52 2
JRI60_RS08915 NONE
JRI60_RS08910 2115188 .. 2115200 -  -4.7  -2.62616   GCATGCGGGAGAGGA                GGCGG GGG CCTCC                GTGGCTGGCAGGTCA  42 38
JRI60_RS08905 2112913 .. 2112927 -  -3.4  -3.25823   CCCTGCGGACAGCAA               CGCCCG TAC CAGCCG               CGGACCCCGGGAGGC  46 147
JRI60_RS08900 2110975 .. 2110994 -  -9.2  -3.76224   CTGGTATTGAGCAAA            CGCGGTGC CACG GTACCGCG             CGGTTGTCTTCACTG  71 130
JRI60_RS08895 NONE
JRI60_RS08890 NONE
JRI60_RS08885 2106568 .. 2106581 -  -2.3  -2.82516   GCGGTGATCATCACA               CAGCT CACG AGCGG                GGGTTCGCCCTCCAG  40 69
JRI60_RS08880 2104767 .. 2104777 -  -8.2  -3.61398   CGGCCTCGCCAACAA                 GGCC AAT GGCC                 GGAGCGTCCAGGGGC  64 387
JRI60_RS08855 2098121 .. 2098177 -  -5.6  -3.14132   CCGGTTTCTCAGCAA GGC-CCCGGCGCGCATCGTCCACCCCA TCCC CAGGGTGGCCATTCCCCCCCGGACGCC GCGTCCCGTCCGCCT  49 167
JRI60_RS08850 2095877 .. 2095890 -  -3.1  -2.78712   CGGCGAACTCAAGCA               CCTTC ATTG GAAGA                GCACCTCCACTCCCG  40 15
JRI60_RS08845 NONE
JRI60_RS08840 2092953 .. 2092972 -  -8.5  -3.10761   ACTCGAACATAGACA            CGGCCCC TGGACG GAGGCCG             AAGATTCAGCGGACC  56 45
JRI60_RS08835 2090149 .. 2090159 -  -5.4  -3.79906   CCAGCCCCAGAAGAA                 GTAG TCC CTAC                 CCGGTCGTCCGCAGA  60 22
JRI60_RS08820 NONE
JRI60_RS08815 NONE
JRI60_RS08810 NONE
JRI60_RS08805 2083141 .. 2083151 -  -2.4  -3.06969   GAACGGACTTTAATA                 CGCG GCG CGGG                 GAGAAGGGTTACACG  41 34
JRI60_RS08800 2082526 .. 2082545 -    -5   -3.2614   CATCGGGCAGACGAA            GCC-CGTCA CGG TGACACGGC            TCATCTCCGAGGGGA  47 281
JRI60_RS08785 NONE
JRI60_RS08765 NONE
        queF 2065064 .. 2065083 -  -3.4  -2.91264   CCGCTGAGGGAGACA            GTGCTCCC AAGC GGCAGCTC             GACAACGTCCGTGAG  42 205
JRI60_RS08740 2063428 .. 2063455 - -10.6  -2.62184   TCTGCGCGGACAGCA        TCT-CCCTCTCCC TTC GGGAGAGGGTAGG        GGTGAGGGTCTCTGG  59 89
JRI60_RS08735 2061878 .. 2061898 -  -8.9  -3.50572   AGGGACGGGAGACAA            GCCTCCCCG GAC CCGGAAGGC            AACGACGCGGCGGAC  62 461
JRI60_RS08715 2057968 .. 2057982 -  -2.8  -3.72576   GTGCGTCCTACCAAA               TCGG GTCATCA CCGA               GGAAGGGACATTCCC  53 19
JRI60_RS08710 2056988 .. 2057004 -  -2.9  -3.33696   GCCGGTGGGAAGGAA              TGGACAC CAG GTGCGCA              GCCAGTCGGTGCTGA  45 164
JRI60_RS08700 NONE
JRI60_RS08695 NONE
JRI60_RS08690 2052601 .. 2052634 - -13.8  -3.09516   TGCTTCACTAGGGAA     GGACTGCCCCGGAC AACAGG GACCGGGGCAGTCG      GATTCTCACGCCTCC  73 108
JRI60_RS08685 NONE
JRI60_RS08680 NONE
JRI60_RS08675 NONE
JRI60_RS08670 2047080 .. 2047099 -  -5.6  -3.26471   CCAGGTGGAGACCAA            CCTCATGC GCCC GCGCGAGG             GCAGCCGCAGCGCCC  49 365
JRI60_RS08645 2042552 .. 2042566 -  -3.5  -3.55761   CACCCATCGTTGAAA              GGACCC TCTC GGG-CC               GGCGCATTAACACAC  51 68
JRI60_RS08640 2040977 .. 2041002 - -11.1  -2.62184   CTCTCGTGGAGAGCA         GGCGGCGGAGCG GGC CG-TCCGCCGCA         CTGCGGCCCGGCGGC  59 55
JRI60_RS08635 NONE
JRI60_RS08630 2038706 .. 2038726 -  -2.4  -3.35522   GAACTGGTGGAAAGA            GCACCCCG TCACC CGAGGCTC            ATCTGCCCCGAGCGT  46 24
JRI60_RS08625 2036858 .. 2036874 -  -7.2  -3.52073   GTTGGAAGACTACAA              CCCCGG GGACA CCGAGG              CCGTCCATGCGGTCT  58 309
JRI60_RS08615 2034610 .. 2034636 -  -6.4  -2.78384   TCGGCGCGGACCAGA         CCCAGCTGACCG TGA CGCCCACCCGGG         ACGTGTCGGCGCTCG  46 291
JRI60_RS08605 2032453 .. 2032492 -  -8.5  -3.26471   CCACGCCCAGACGAA GGAGG--GCGCCCACCGCG CCAT CGAGGCGGGCGTGGCCTCC  ATCGAGCACGGCTTC  56 489
JRI60_RS08590 2030308 .. 2030330 - -13.4  -2.64144   CTCTGATTCAAATAC           TCCCTCTCCC TCT GGGAGAGGGT           TGGGGTGAGGGTCTA  67 58
JRI60_RS08560 NONE
JRI60_RS08545 2021077 .. 2021087 -  -2.4  -4.39386   CCGAAAGGAGGAAAA                 CGAC CCT GACG                 CAGCCTGTCTAATGC  65 34
JRI60_RS08540 2019954 .. 2019989 - -13.4  -3.39895   CTCTTCACGAACGAA    CCCGGCAACGT-GCC TTGAGGT GGCGACATTGCCGGG    CTCCGACGTGCTACG  75 62
JRI60_RS08510 2015542 .. 2015577 -  -7.6  -2.68823   GGTGCTTCAGATAAC    CCTCACCCCGTCCCTCT CCC AGAGGGAGAGGG-GAAA    TTGCCGCGGGGGAAT  51 61
JRI60_RS08505 NONE
JRI60_RS08500 2011436 .. 2011449 -  -3.1  -3.14683   ATACTTCGTCATGAA               GCCGCA ATG TGCG-C               GAAACGCGGGGGGTG  44 48
JRI60_RS08495 2010653 .. 2010684 - -13.7  -3.41051   CGAGCGCCAGCAGAA      GGCGGAAGGGCGGC TCTAG GCCGCCCT-CGGCC      GGCGGGAGCTCACCG  77 113
JRI60_RS08475 2006627 .. 2006655 -  -4.4  -3.30124   CGCCATGCGTCAGAA        TCCGCACCGTCA CCCGC TGCCGTTGCGGG        ACTTCGTGCGTGACG  49 379
JRI60_RS08455 NONE
JRI60_RS08450 1998392 .. 1998435 -  -4.4  -4.27316   GTTTTGAACGGAAAA CGGGAGAGCACCGGGTCT CTGATTTC AGACCCGGTGCCAGTCCT TTCGGTGTGAGTGGG  66 42
JRI60_RS08445 NONE
JRI60_RS08440 NONE
JRI60_RS08435 1994667 .. 1994678 -  -2.2  -2.78762   ATACGATCAACATCA                GAAG CTCA CCTC                 CATCTGCAGCATCAG  38 11
         tmk NONE
JRI60_RS08425 NONE
JRI60_RS08420 1991513 .. 1991526 -  -8.1   -3.4072   CACGTTCGAGGACAA               GGAGG AGAT CCTCC                TGCTCAGCGATGACG  55 170
JRI60_RS08410 NONE
JRI60_RS08405 NONE
JRI60_RS08400 NONE
JRI60_RS08395 NONE
JRI60_RS08390 NONE
JRI60_RS08385 1983511 .. 1983527 -  -8.7  -3.64801   AAAACATGACAAACA              GAGAACG GGG CGTCCTC              AAGGCTCGCGGCCGA  65 24
JRI60_RS08380 NONE
JRI60_RS08375 1980763 .. 1980789 -    -3  -3.29144   CGAGGCGGCGGACAA        GGGC-G-TGACG GTCAA CGCCATCTGCCC        CAGCTACGTGCGCAC  47 259
JRI60_RS08350 1972805 .. 1972815 -  -2.4  -3.53224   GACGCCCTGGCGAAA                 GAGG CCT CCGC                 GGAGGAGGTGGCGCG  48 287
JRI60_RS08340 1971142 .. 1971170 -  -4.5  -3.35679   GCGCGTCATCGACAA        GCTTGGGACCG TGGTGGG CGGTGCCAAGG        GGGGCGAGGCTGCTC  51 152
JRI60_RS08335 1966019 .. 1966033 -  -7.8  -2.87132   TTCGCCTCGGAGATA               GAGCCG GCG CAGCTC               GCCAACGTGGAGATG  50 88
JRI60_RS08320 1963514 .. 1963528 -  -4.2  -3.23216   TCCGAGCACGAGGAA               GGCG CGATCGT CGCC               TTCCTCCGGACGCTC  47 69
JRI60_RS08310 1960394 .. 1960425 -  -6.4  -3.37796   CTTCAGCAGCTACAA      CGTC-CGAGGGGCCG TGC CGGCCCTGGGTGACG      ACCTCGTGGGCAACG  53 248
JRI60_RS08290 1958398 .. 1958427 -  -6.2  -3.71649   TCGGGAAACGGGAAA       GGCGGTCGGCCG ACCAAG CGGCCGGCCGGG        GCATGATGCCGCAGG  59 108
JRI60_RS08285 1956639 .. 1956671 - -19.8  -3.61398   CGGCTGTGGGAAGAA      GCGGGCCGCCCGCC ACGAG GGCGAGCGGCCCGG      ACCGCCCAGCTCCGT 100 53
        serA 1954934 .. 1954952 -  -8.8  -2.70932   GTGGTTCTTCAATGA             GCCGGAGT TGC ACTTCGGC             AAGGACGTGCTGGTG  51 404
JRI60_RS08265 1951794 .. 1951837 -  -3.6  -3.53224   GAGCGGTTCGTCAAA CCGGAGCCCGT-GTCGGCCGA GGA CCTGCGGGCGACGGGCTGCGT GGTGTCGGCTGGCAC  50 300
JRI60_RS08195 NONE
JRI60_RS08190 1937089 .. 1937102 -  -2.3  -3.14051   CGATGGTGACGAAGA               TGAGC CTCT GCTCC                GGACCTTTCCGTGGA  44 167
JRI60_RS08180 1935778 .. 1935788 -  -2.4  -4.07568   CGTCCGCTGTGAAAA                 CTCC CAT GGGG                 TCATGCGCTCCAGGG  58 130
JRI60_RS08170 1933369 .. 1933382 -  -5.9  -3.62522   CAACTCCTGGAAGAA               GCCGG AGCT CCAGC                CCCTGGTGATGCGCG  57 268
JRI60_RS08140 NONE
JRI60_RS08135 1927400 .. 1927417 -  -4.1  -3.14564   CCACGCGTGGATGAA             TGCTCGT GAGT ACGAGGA              CTGGTGGATCTTCTC  47 494
JRI60_RS08120 1923506 .. 1923528 -  -7.7  -2.52543   AGGCGCGGGAACGGA           GCGGAGG GATCCGGCA CCTCCGC           TCCGTGGACGACCCC  49 46
JRI60_RS08115 1922709 .. 1922730 -  -2.3  -2.71011   ACGTCCGGGCAATGA           CCTCC-GA TGTCTGC TCAGGAGG           CGGAGGATCCGTCCA  38 18
JRI60_RS08110 1920985 .. 1921013 - -10.2  -2.53876   GTTGACCCGAATTCA        GGCCTCGCGAAC TCTCT GTTCGCTCGGCC        CTCTCAGTCGCAGTG  57 29
JRI60_RS08105 1917929 .. 1917944 -    -6  -2.64616   TGCGGATTGACAGGA              GGAGGC GAGT GCCGCC               TGGATCGGGTCAAGA  46 53
JRI60_RS08100 1915079 .. 1915120 - -19.6  -3.55622   GTCAAGGTCTTGAAA GCGAAAAGCCCGGTCCTC GCGTGG GAGGACCGGGCTTTTCAG  ACGAGCGTGTGAGTC 100 44
JRI60_RS08095 NONE
JRI60_RS08090 1910945 .. 1910969 -  -6.3  -3.25823   CCGTCTGCAGATCAA          GACCTGCGC CTCCTGC GCGCCGGCC          TTCACGACGCTGGGC  51 181
JRI60_RS08080 1907798 .. 1907811 -  -3.1   -4.1196   AAGGCAGGGCGAAAA               GGA-GC AAC GCATCC               CTCTGGCGCGCTTCT  61 322
JRI60_RS08070 1906140 .. 1906159 -  -9.2  -3.12895   TCCGTCAGGAATACA            GCCGCGGA GATG TCAGCGGC             ATGCCCTACGAGGGG  59 133
JRI60_RS08065 1904442 .. 1904485 -  -2.2  -3.06133   GAAGGCCCTATTGAA CGAGGCCTCTCTCTGGTAGCC GAT GGCCGCC-GAGAGCTCGCTCG GCACGGGCACCTCGC  41 68
JRI60_RS08060 1903008 .. 1903025 -  -9.1  -2.55213   TAGCCATTCAATGGA             GCGCCCA TCAC TGGACGC              TCTTGGGGTTGTCTG  54 71
JRI60_RS08015 1894609 .. 1894624 -  -2.6  -3.52539   CAAGCGCAACGACAA              GATGCAG AAC CT-CATC              CGCCGGCCGGATGGC  48 242
JRI60_RS08005 NONE
JRI60_RS08000 1892145 .. 1892157 -  -4.8  -3.09933   TTGGAATGCAGTCAA                CCTG CCGGC CAGG                GCTGCAACGGCCGCA  47 9
JRI60_RS07990 1887890 .. 1887945 - -10.3  -3.46602   TCGCGCACAGGACAA GCCCGTGCTGGG-A-GTGGGGGCCGTG AGGG CACAGCACCCGCATACCCGGCCCGAGC ACCTCAAACGGAGTG  65 393
JRI60_RS07960 1884362 .. 1884372 -  -4.6  -3.04144   GCGCCACTTTTAACA                 CACG CGG CGCG                 GCGATCAACGGCTCC  45 56
JRI60_RS07955 1883161 .. 1883200 - -12.1  -3.13164   TCCCGAAGTAGGGAA GCGAGAGCCCCGTCGCGCC TGAT GGCGCC-CGGGGC-CTTGC  TACGAGTCCCAGCGC  69 496
JRI60_RS07935 1876214 .. 1876247 -  -4.4  -3.80733   GCTACGGCACAAGAA     GTCCGGGTCATCCG TGTGCG CGTACGACCAGGCC      ATGGTAGCTTCCGTG  58 355
JRI60_RS07930 1874331 .. 1874345 -  -6.4  -3.05384   TCTGGTGTGAGGGAA               GCGTTC GAT GAACAC               GCGCATGCGAAGTGA  49 250
JRI60_RS07915 1871679 .. 1871702 -  -3.7  -3.29471   CCGGGATCAGATCAA          CCTGCCGCG CGGAGC CGCGACCGA           GGAGGAGATCCTCGT  47 287
JRI60_RS07900 1867143 .. 1867179 - -10.2  -2.52464   TCTTGCGCGAACGCA   GCGCCTCGCGCAGGATGC TCC GCAGCCTG-GC-AAGCGC   TCGCCCCCAGCGCGG  56 355
JRI60_RS07895 NONE
JRI60_RS07890 1865430 .. 1865467 -  -9.9  -3.23395   AGCCACCACCACCAA   CTCCCT-GCCGCTCTC CTCAAGC AAGAGCGGCCAGGGCG   GCAGTGTGCCCCATG  63 119
JRI60_RS07885 1863757 .. 1863773 -    -5  -3.92641   AAGCCCATCGACAAA              GCCCCG GAAAG CGGGGT              GAGCGAGTGAGCGGG  61 504
JRI60_RS07870 1858914 .. 1858929 -  -6.1  -3.41602   CTGACGGCACGACAA              CCTGG GACTGA CCAGG               AGCAGCAGTCCCAGC  55 402
JRI60_RS07865 1857864 .. 1857884 -  -4.8  -3.97947   TTGAGCTATTACAAA           GACCAA-GA ACAC TCATTGGTC            CTCGAGTATGATGGC  61 456
JRI60_RS07855 1856391 .. 1856403 -  -3.3  -2.53263   CTCACCTGCAATTGA                GGGCA GGC TGGCC                ATTTGTGACGGCGCA  39 186
JRI60_RS07850 NONE
JRI60_RS07845 NONE
JRI60_RS07835 NONE
JRI60_RS07830 NONE
JRI60_RS07820 NONE
        xdhC NONE
JRI60_RS07810 1847342 .. 1847352 -  -4.6  -3.27498   GAGATGGGAGAGGAA                 GGAC ATG GCCC                 GCCTTTTACCGGACG  49 31
JRI60_RS07805 1846077 .. 1846097 - -16.9  -3.94188   ACCCAGGCCAAATAA            CCCTCTCCC TCT GGGAGAGGG            ACGGGGTGAGGGTAT  95 70
JRI60_RS07780 NONE
JRI60_RS07770 NONE
JRI60_RS07765 1828855 .. 1828865 -  -2.4  -3.53224   CATCTTCGCCGGAAA                 CGGG GAG CGCG                 GGCAGGGGGCGTTGC  48 213
JRI60_RS07760 1826165 .. 1826177 -  -6.2  -2.76263   GGGATGACTGAATGA                GCCC GGCGG GGGC                GGGGACGCTCACTTC  47 34
JRI60_RS07720 1813397 .. 1813412 -  -3.2  -2.62184   CGCTCGTGCATACGA              CCTCCAG TAC CCGG-GG              AAGGGGGGAGTCCCA  39 134
JRI60_RS07715 1812457 .. 1812470 -  -2.3  -3.19285   GATGGCAAAGATATA               CACCG CAAG CGGTT                CAAGCCGTGGCGTGA  42 60
JRI60_RS07710 1811740 .. 1811760 - -14.1  -3.14132   CGCGCTCGGGAGCAA            CTGGTCTGA CTG TCAGACCAG            TTCGTCCGAAGCGCG  73 101
JRI60_RS07685 NONE
JRI60_RS07680 NONE
JRI60_RS07675 NONE
JRI60_RS07670 1806183 .. 1806213 -  -5.3  -3.03124   GTGGACCGTTGAAGA      GGGAGCGCGTCAGC GCGG GTTG-CGCACGCCC       ACCTGCTGGCACATG  47 4
JRI60_RS07655 1803149 .. 1803194 - -12.6  -4.56597   TGCGTTCGTGAAAAA CGAAGCGGCCTGG-ACCGCTC ACGAG AAGCGGTTCCAGGCCGGTCTG GTGCGGTGAGCACCG 100 126
JRI60_RS07620 1791665 .. 1791675 -  -8.2  -2.98823   GCCGCCGGAGATAGA                 GCCG CCC CGGC                 ACGACCCACCGTTAC  53 153
JRI60_RS07610 1790094 .. 1790108 -  -9.2  -2.71011   AGCGCCCGTGAACGA               GGCGAG TAC CCCGCC               CCCGTGTCGGATCAA  55 78
JRI60_RS07605 NONE
JRI60_RS07600 NONE
JRI60_RS07595 1780858 .. 1780881 -  -2.2  -3.30124   CCCTATCTCGCACAA          CCCGAGCGCG ACCG CATGTCCGGG           GTGTTACGCGCTACG  44 36
JRI60_RS07590 NONE
JRI60_RS07585 1777852 .. 1777879 -  -5.5   -3.1372   GATTGGCCAGGAATA        CGCCACGTCCT CGGGCT ACGAGGTGGCG         GAAGTCGCCGAGGCC  49 207
JRI60_RS07570 NONE
JRI60_RS07560 1773856 .. 1773875 -  -4.2  -3.14132   GGTGGCGGGGATGAA            TGAGATCC GCCC GGGCCTCA             CCCCCTTCTTCGACC  47 425
JRI60_RS07545 1770982 .. 1770994 -  -5.5  -3.30124   TCGTACGCGCGAGAA                GGCGT TCA ACACC                TGTGGCTCGTGGACC  51 182
        aceB 1768087 .. 1768108 -  -2.1   -3.5774   ACGGAACCGCGGAAA           GGGACGGCC ACTC AGCCGTGCG            AGACGAGCGCCTCGT  48 15
        aceA 1766637 .. 1766676 - -19.4  -3.12449   CTCCAGGAACACAGA  GGCCGCGAGCCCCCGAGAA GAA TCCTCGAAGG-TCGCGGCC  ACCATCCCCTCTCCC  85 101
JRI60_RS07510 1761300 .. 1761311 -  -5.8  -3.70902   TTTCTCATATCCAAA                CAGC CATG GCTG                 GGCGACCTGGGGCCA  57 71
JRI60_RS07505 NONE
JRI60_RS07500 1756027 .. 1756047 -  -6.7  -2.92192   TTGTATCCAATGACA            GGCGAGCGG TCT CCGATCGGC            AGGCTCGCCGCCGTC  50 40
JRI60_RS07495 NONE
JRI60_RS07490 NONE
JRI60_RS07485 NONE
JRI60_RS07480 1751746 .. 1751769 -  -3.1   -4.4078   CCGTGGGAATCAAAA         CCGGCC--GCG GTCC CGCCTGGCCAG          CGCGGTCTCGTACCA  66 108
JRI60_RS07470 1749453 .. 1749472 -  -5.7  -2.84276   ACGTCCAATGAATCA            GCCACGGC TGCAC GCC-TGGC            GCCACTTGCCTCGTG  46 3
JRI60_RS07465 1747905 .. 1747915 -  -2.4  -3.73402   ATACCCCCTACGAAA                 TCCG CTC CGGG                 GGCGATGAAGTGGTT  51 59
JRI60_RS07460 1746987 .. 1747001 -  -2.8  -3.56325   CGTGGACAACGACAA               CCTC ATCATCG GAGG               GCAGTCGGGGAGCGA  49 327
JRI60_RS07450 1745491 .. 1745501 -  -8.2  -2.71364   TCAGGTCGCGAACCA                 GGCC TCC GGCC                 TCCCGCTGGAGGTGA  51 109
JRI60_RS07440 1742361 .. 1742384 -  -3.1  -3.27029   GCCCACGAAGGAAGA          GCTCCTCGCC GCGGT GGGGAGGA-C          GATGCCGGATCTGCT  46 524
JRI60_RS07430 NONE
JRI60_RS07415 1737716 .. 1737733 -  -3.3  -2.57132   GCCTTCGCGGAGAAG             GGCC-CGG GCG CCGCGGAC             TTCCGTGAGGACGGT  39 345
JRI60_RS07405 1733764 .. 1733787 -    -3  -2.87931   GTCACGGCGGAGACA          CGCGGATGGCC CCA GGGG-TCCGCG          GTCTCCGGCTCACGG  42 59
JRI60_RS07365 NONE
JRI60_RS07360 1725109 .. 1725139 -  -2.2  -3.91716   GTACGGGTGAAAGAA       GGCCAGACGCTGGG TGA CCCGGAGGCGGGTC       TCCAGTACTGCTCCA  57 221
JRI60_RS07350 NONE
JRI60_RS07345 1717735 .. 1717746 -  -3.6  -3.16564   CGCGGACGCGATGAA                CGCC CGGG GGCA                 GGCTTTCGTGATGGT  45 196
JRI60_RS07315 NONE
JRI60_RS07310 1708100 .. 1708110 -  -5.4  -3.28791   ATGTCGTGCTCACAA                 TGGA TTC TCCA                 GGGGTGGAAGGAACG  51 54
JRI60_RS07305 1706505 .. 1706527 -  -3.2  -3.72893   GACTGCCCGAGGAAA           CGTCTCGCTG GCG CTGCGCGAGG           ACGGCTCCGTCTGGG  56 384
JRI60_RS07295 1703343 .. 1703369 - -12.2  -3.25802   CACCAAACCCACCAA         CTGCACCGCGTC CTG GCCGTGGTGCAG         CTCCGCCACCCTGGG  65 193
JRI60_RS07285 NONE
JRI60_RS07280 1700350 .. 1700378 -  -2.9  -2.71263   AAGGCTCCGGAAGCA        GCCCCCACGACGG CAG CCACCTCGGGAGA        TGCACCGCCACGGGA  39 123
JRI60_RS07270 1695128 .. 1695138 -  -2.4  -3.66018   GCAGGAGCTGAAGAA                 GGCC GAG GCCC                 TGTGTCTGGAGTTGG  51 99
JRI60_RS07260 1689245 .. 1689268 -  -4.4   -3.1552   GTGGACCGATGAAGA          GGTGGTGCCTG ACC CGGGCGCC-CC          TGGAATTCACCACGG  47 45
JRI60_RS07255 NONE
JRI60_RS07250 NONE
JRI60_RS07245 1684141 .. 1684167 -  -2.9  -3.61178   CGCACGGACGTGAAA        TGAGAGGGTTGC GCAT GCT-CCCTCTCC         CCCTGGGAGAGGGCG  49 159
JRI60_RS07195 NONE
JRI60_RS07190 1667026 .. 1667056 - -28.4  -3.51032   ACCCCTGAAGTACAA       CGGGCGGGCACCTC GTG GAGGTGCCCGCCCG       TCTTCTTTTCGAAGC 100 53
JRI60_RS07180 1664365 .. 1664383 -  -6.6  -3.30039   GAGCGACAAGCAACA             GGCCCGAG GCT CTCAGGGC             ATCTCCTGACCGCGC  53 19
JRI60_RS07175 1662445 .. 1662455 -  -6.8  -3.02043   AACTCCTCCGGAACA                 CGGA GCT TCCG                 CTCCCATCCTCTTTT  51 201
JRI60_RS07170 NONE
JRI60_RS07165 1658156 .. 1658181 -  -2.4  -3.71794   AGCGAACCAGGGAAA         GAGGCTCTCG TCTCAT CGTGGACCTC          AGAAACGGAACGTGG  51 24
JRI60_RS07160 1655715 .. 1655768 - -17.4  -4.10552   GTGCACGAAACGAAA CCGCCGGCCACGTCCTGGCTC-ACTC TCTC GAGGAGCGCCAGGCCGCG-CCGGCGG CTTCATCCCGGCTCG 100 44
JRI60_RS07150 NONE
JRI60_RS07145 NONE
JRI60_RS07140 NONE
JRI60_RS07135 NONE
JRI60_RS07130 1648969 .. 1648993 -  -4.1  -3.63515   CGCCAGCGGCAACAA          GCTGACCGTCG AGG CGAAGTTCGGC          AGCCGCACGCAGGTC  55 175
JRI60_RS07115 NONE
JRI60_RS07110 NONE
JRI60_RS07070 NONE
JRI60_RS07065 1637701 .. 1637722 -    -8  -2.70932   GCTGGGCCTCAAGGA           GGGCGGCGT CTCCT ACGCC-CCC           GTGCGCGTGGACTTC  49 229
JRI60_RS07015 1623638 .. 1623658 -  -6.8  -2.90075   GGCTGTGGAAGTACA           CGTCAGCGG CCCT CCGCCG-CG            AGCGCTGGGGGCTGG  50 7
JRI60_RS07010 1622097 .. 1622112 -    -4  -2.61226   GAGAAGATGAACCCA              CTCA-CG AAC CGATGAG              GCCAATCCTGGAAAA  40 127
JRI60_RS07005 1620024 .. 1620082 -  -5.7  -2.72344   GCCGAGGGTGAACGA CGTGTCCGTGCTCCCGGCCTGGCGCGCCC CGG AGGC-CGCCAGCCCCGAGTCGCGGCC-CG AGCCCGGGGTGGCGG  44 397
JRI60_RS06975 1614991 .. 1615014 -   -11  -3.30441   CACGATTCCTTAGAA          CGGGGGCGAGG TAC CCTCACCCC-G          TCCCTCTCCCGGAGG  66 18
JRI60_RS06945 NONE
JRI60_RS06940 1605749 .. 1605773 -  -9.9  -3.98083   CAGTGAAGCGACAAA          CTCAGGCGGCG CTT CGCGGCGTGAG          CTTCAGCAGCGTCTC  77 2
JRI60_RS06935 1605224 .. 1605237 -  -2.3  -3.39327   GCTGGACAGGGAGAA               GACCA CCGG CGGCC                ATGTGTTCGACTCGG  45 225
JRI60_RS06920 1600757 .. 1600774 -  -6.9  -2.79302   AGGAGCCGGATGATA             CTCCGCG ACTT CGTGGAG              GAGTTCACCCTGAAG  46 356
JRI60_RS06850 1585732 .. 1585744 -  -9.1  -3.57144   CCTGGGAGTGGGAAA                GGGAC ATC GTCCC                GTCTTCTACCTCATG  64 100
JRI60_RS06845 1583528 .. 1583569 -  -4.3  -3.47078   GACCCTATAGGAGAA CCGAGCCCACCAGAAGC ACGGTGAA GCCCCTCGTCTGCTCGG  CCGCTCCGCGTCAAT  51 98
JRI60_RS06840 1580341 .. 1580358 -  -8.4  -2.76696   CTGGTGCGCAACAAG             GCGCTC TCGCCC GAGCGC              ATCAAGGCGGTGGAG  51 525
JRI60_RS06810 NONE
JRI60_RS06805 1572546 .. 1572556 -  -4.6   -3.5393   ATCACCTGTGTGAAA                 GCGC CCA GCAC                 GAAGATGCGCCCGCT  52 99
JRI60_RS06800 NONE
JRI60_RS06795 1570776 .. 1570804 - -12.5  -2.62184   CCCGGTTCTACACCA       CGCGAGGGC-TG GAATCG CATGCCCTCGCG        CGTGCCGTTCACCGC  64 34
JRI60_RS06790 NONE
JRI60_RS06785 1569500 .. 1569528 - -14.6   -3.1364   CACCCAACCACCCAA        CCACCCCTCTCC TTCTG GGAGAGGGACGG        GGTGAGGGTATCTGA  76 83
JRI60_RS06740 1561098 .. 1561118 -  -3.2  -3.14132   GCCCTCGCGTACGAA           CGTCGGCTC ACGG GAGACG-CG            AGCTCCAGGCCGGGT  44 12
JRI60_RS06735 NONE
JRI60_RS06730 1559649 .. 1559671 - -13.4  -3.55444   GCGCGAGCCTCCAAA           CCGTCCAGGC GAA GCCTGGATGG           AGTGCGTCACGTTCT  77 232
JRI60_RS06725 NONE
JRI60_RS06640 NONE
JRI60_RS06635 1541558 .. 1541570 -  -4.7  -2.52676   CACCCTCCCAACCCA                CGCGC TCA GCGCT                TCGCCGTCGCATCTC  42 18
JRI60_RS06625 1538331 .. 1538343 -  -9.1  -3.28924   GACGTTCGGCTAGAA                GCTCG CGT CGAGC                TGGAGGCGGGCGAGG  61 7
JRI60_RS06615 NONE
        cysT NONE
        cysW NONE
JRI60_RS06600 1533466 .. 1533482 -  -2.1  -2.88861   GATCAGGTCCATACA              GGGGGAA AGG TACCCGC              ACTTGGCTCAGATAG  40 33
JRI60_RS06595 1532451 .. 1532464 -  -2.3  -4.57073   TACCTGCTGGAAAAA               TCCGC AGAC GGGGA                GGCTGGAGCGGGCCA  67 343
JRI60_RS06590 1531631 .. 1531641 -  -6.8  -2.52464   TCGTGTGGCAACCCA                 TGGC CGG GCCA                 CCTATTTCCCAAATC  47 150
JRI60_RS06585 NONE
JRI60_RS06580 1526609 .. 1526637 -  -8.7  -3.04792   GCACCATCGGGAAGA        TGGCGCCGCCCCA CTC TCGGGCGCCGCGA        AGAATCCGGGCCCTG  55 85
JRI60_RS06555 1521642 .. 1521656 -  -3.4  -3.27902   TGACGGAAGAAGATA               GGGGGC CTC ACCTCC               GGAGGGAGGCTGTGT  46 183
JRI60_RS06550 1519548 .. 1519571 -  -7.4  -3.08679   CTCGTTGATTGAAGA          GGTGGTTCCAC TTC GAGGA-CCACC          GGCTGGAGTCCGCGG  54 294
JRI60_RS06535 NONE
JRI60_RS06515 NONE
JRI60_RS06510 NONE
JRI60_RS06505 NONE
JRI60_RS06500 NONE
JRI60_RS06495 1506177 .. 1506193 -  -2.1  -3.17051   GGCGTACCAGGAAGA              CCTGCTG CCC CTGGAGG              ACACCCTGCCCACGA  44 324
JRI60_RS06455 1499553 .. 1499572 -   -10  -2.90392   GATGTTCCAAGGAGA            CGAGCG-GG TGT CCACGCTCG            ACTTGTTCCAGCGGA  56 491
JRI60_RS06445 NONE
        nagZ 1495633 .. 1495643 -  -6.8  -3.40403   CCTGGGCGATGACAA                 CCAG GAG CTGG                 GCACCCCGGGCGAGG  53 127
JRI60_RS06405 1491857 .. 1491869 -  -9.1  -2.96249   GCGGAGCAACAACTA                GGGAC ACC GTCCC                GGTGGGGGTGTTGCC  57 51
JRI60_RS06395 NONE
JRI60_RS06390 NONE
JRI60_RS06385 1487348 .. 1487377 -  -4.9  -2.61912   GGAGCCACGGACAAC       GCACCACGTCC CGAGAGTT GGACGGGACGC        TACCACCTTTATCGG  42 222
JRI60_RS06380 1485407 .. 1485435 - -23.9  -5.42259   CGAGTCTGAAAAAAA        CCCCGCGACCGGA GGA TCCGGCCGCGGGG        TCAGGTGAGTGGCGG 100 61
JRI60_RS06375 NONE
JRI60_RS06370 1483806 .. 1483821 -  -6.1  -2.90075   CCTCGGTGAAGGAGA              CCGGT GTCAGA ACCGG               ACCAGCGCGCCTTCG  48 16
JRI60_RS06365 1481870 .. 1481906 - -26.7  -4.57569   GGAGTGCGCGAAAAA    GGAGAGCCCCGACACTC GCG GTGTGTCGGGGCTCTCC    GGAAACAGCGGGAGG 100 58
JRI60_RS06360 1480812 .. 1480842 - -24.1  -3.67175   AGCCCGCAAAAGCAA       GACGCCGGAGCGC TCGAG GCGCTCCGGCGTC       GGGGACTTCAGGACC 100 52
JRI60_RS06355 1479715 .. 1479752 - -19.2  -4.57569   GCACCGTGTGAAAAA   CACGAACGCCGGAGCGC GGGGG GCGCTCCGGCGT-CGGG   ACTTCAGGACTTCAG 100 48
JRI60_RS06350 1478630 .. 1478660 - -24.1  -3.56704   GCCCCACGAAAGCAA       GACGCCGGAGCGC TCGAG GCGCTCCGGCGTC       GGGACTTCAGGACTT 100 51
JRI60_RS06345 1477970 .. 1477984 -  -7.1  -2.70932   GGCGTTCCGCAAGTA               CGCGT GGCTG ACGCG               GAGCATGTTGCTGCT  46 184
JRI60_RS06305 1470550 .. 1470566 -  -5.1  -3.28712   CTGGGTGCTGGAGAA              GGAGC TGCCGGT GCTCC              GGGAAAAGCAGCCAG  51 419
JRI60_RS06290 1468298 .. 1468311 -  -5.2  -3.06183   CGGATCCCCAGTGAA               GCGC AGCCGG GCGC                ACGCGTCCATGGTCC  47 102
JRI60_RS06285 1467597 .. 1467640 -  -5.1  -2.95521   GCGACATGAACGACA CGCCCGACTCGCGCTCGCTG CTGCT CCTCAAGCGCGAG-CTGGTG GACGTGTTCGCCCTG  46 287
JRI60_RS06265 1464812 .. 1464833 -  -3.5  -3.53012   GCCTGCCTGTGCAAA           GCGCGGCCC ACCC GTACCGCGG            GGCTGGGATGACCTG  51 243
JRI60_RS06260 1464121 .. 1464132 -  -5.8  -3.17146   TCCTCCTAGAAGACA                CGGA TGGC TCCG                 GCCGGCGCTGCGATG  49 4
JRI60_RS06255 NONE
JRI60_RS06250 NONE
JRI60_RS06245 NONE
JRI60_RS06240 NONE
JRI60_RS06235 1456047 .. 1456062 -  -5.4  -3.01712   GGTCGCTCCTTAATA              CGCCTT CGAG AAGACG               ATCCGGCCCGGCGAC  47 4
JRI60_RS06230 1455469 .. 1455498 -  -2.7  -3.08032   CCTGGTGGAAAATTA       CCGCGCTACCG CCACTCTC CGTTGGCGCAG        ATCGCTTGGCAATCC  44 1
JRI60_RS06225 1451792 .. 1451850 -  -4.1  -2.57132   CTCCGTCTGGAGAAT GCTCGCGGAGTGGGGGGATGGCGCGGG GGGAG CAGGCGCTACCTCCCCCCGCGACGTGC CCTGCTTCGGACGGC  40 40
JRI60_RS06220 1451206 .. 1451240 -  -3.5  -3.14051   TGACGGCGACGAAGA     GGCGCATACCG GTTCATCCCTCCA CGGGACGCGCC     ACCCGGCGGCGCGGC  45 4
        thpR NONE
JRI60_RS06210 NONE
JRI60_RS06205 NONE
JRI60_RS06185 1442094 .. 1442113 -    -2  -3.28712   GGTTCCCTTGGATAA            CCCCATGC AAGT GCATGTCG             ATGTCAATCAGCCCG  45 372
JRI60_RS06120 NONE
JRI60_RS06115 1426799 .. 1426822 -  -3.8  -3.53012   TCTGGCGTTTCCAAA          GGTAGGCACAC GCG GCG-GCGTACC          TGGGAGAGCGCCTGG  51 90
JRI60_RS06110 1425870 .. 1425921 -  -9.4  -2.64274   ACTCCGGGAAAGCCA CCGCCGCTGGCTGGAGCGCACGAG GGGCGG CTAG-GC-CCCCAGGAAGCGGCGG TACCGGGCCTCGAGC  54 4
JRI60_RS06105 1424830 .. 1424849 -  -4.8  -3.28712   TCTGCGGTCCGACAA            CGCCGTGC TGAT GCGCGGGG             CGGGCTCCTGGGCGT  49 136
JRI60_RS06075 1419209 .. 1419227 -  -6.6   -3.4252   CTTCAGTTATTACAA             CGCGGGAT ATG ACCCCGAG             TGGAAGGCGCGGAGC  53 338
JRI60_RS06030 1405856 .. 1405899 - -11.6  -2.57132   TCCTCGGCGGACAAG CACTGCCCACGTGG-GGCTAC GCG GTGGCCGCCACGGGGGCCACG TTGGAGCGCCGGGTG  61 269
JRI60_RS05940 1384697 .. 1384739 - -25.6  -3.51232   GGGGCCGGAAAGGAA GACGCCCGGCGAGGGCCCTC GGG GAGGGTCCTGACCGGGCGTC GGCGGGGGAGTGTCG 100 77
JRI60_RS05935 NONE
JRI60_RS05930 1381294 .. 1381304 -  -2.4  -3.35679   CCGGCGCATCGACAA                 GCTC GAT GCGC                 TGGAGGGCTGGTTCC  45 357
JRI60_RS05920 1377783 .. 1377820 - -12.2  -2.62184   GCCCGGGGGAGACCA  CG-CAGGTGACGGAGGACT TCC AG-CCTCCGTC-CCTGGCG  CGCGCCGAGTGGGAG  59 170
JRI60_RS05895 1373351 .. 1373380 - -20.1  -3.67175   AGTCCGGAAAATGAA       GAAGGCCCCCCTG TCGC CAGGGAGGCCTTC        GCACACTACGTGCAA 100 55
JRI60_RS05890 1372525 .. 1372570 -  -7.5  -3.05384   CTTCCCGGTAGGGAA GGTGGGAACGCCCCTGGTGG GCTTCAA CC-CCAGCGGCGCTCCTACT GTGCGCCCGCCACCG  53 21
JRI60_RS05885 1371697 .. 1371748 -  -2.6  -3.01924   CATCGTCGTCGAAGA TGCGCA-CGGGCGGGCAGGGAGGCC AGG GACGGCCGGGCACGCCCGGTCCGCT TCCCCGGTTGCCCTC  41 55
JRI60_RS05880 1370597 .. 1370609 -  -3.3  -3.54653   AGTGGGACGAGAGAA                CGGTG TCG CACGG                GCCCCTCCGTGGGGA  49 105
JRI60_RS05875 1370168 .. 1370181 -  -3.7  -3.56325   GGGGGAGAAGCACAA               GCTGC TGGC GCTGC                TGGATCGGGTGCAGC  50 293
        yedA 1367861 .. 1367913 -    -7  -2.75064   CTTCCCACCGAAGCA GGCACCGAAGCGGGTG-CG-GCCCG GGAGCG CGAGCTCATCGCCCACCTCGG-GCC CGAGTGCTTCTACGA  46 120
        glnA 1363526 .. 1363563 - -19.1  -2.71011   ACGCTCCCTGAACGA   CCACGGGGCGCCCCCGG TCTC CCGGAAACGCCCCGTGT    TGAACCCTGGGCTCT  87 108
JRI60_RS05845 1362133 .. 1362143 -  -8.2  -2.56747   CACGGAGCAGAAGAT                 CCGC TTC GCGG                 TGGGAGCCGCGGCGG  50 182
JRI60_RS05835 1361043 .. 1361085 -  -5.2   -3.7282   GCACGCGATGAACAA GGGCGGCACGGTGAGCGACG CCA CGCTGCGCGCGGTGCGGGCC TCCGGCATCCGGCGC  60 374
JRI60_RS05820 1357399 .. 1357413 -  -4.2  -3.04263   AGTGGACGGGCAACA               CGGC GCTGAAG GCCG               GTGACTGGAACACCA  45 203
JRI60_RS05810 NONE
JRI60_RS05805 NONE
JRI60_RS05800 1350186 .. 1350208 -  -7.7  -3.01712   TGCTGGTCGGGAAGA          GGCACGCGAGC CCC GC-CGCG-GCC          GAGCCCAAGCCGGAT  53 104
JRI60_RS05775 1343659 .. 1343669 -  -2.4  -3.45023   CCAGGAGCAGCAGAA                 GCTC AAG GTGC                 AGGTGGAGGTGGTGC  48 392
JRI60_RS05755 1341402 .. 1341421 -  -5.6  -3.44146   TCCGCCCAGAAGCAA            CCCGTGGCC GAG GGCC-CGGC            GGAGTTCGACCAGGC  53 343
JRI60_RS05730 1336607 .. 1336639 -  -3.3  -2.90075   CCCTCGTCAACCACA      CGGAGACGGAGTTCA CCC TGGACTTCATCCACG      TCCAGCCGCATCCGG  42 242
JRI60_RS05720 1335464 .. 1335489 -  -9.6  -3.20573   TGACCTATATGAAGA         CCCGCGCCGC GGAGTT GCTGCGCGAG          GAGGACCGCTCGCGC  59 180
JRI60_RS05710 NONE
JRI60_RS05705 NONE
JRI60_RS05700 NONE
JRI60_RS05695 NONE
JRI60_RS05690 1329683 .. 1329715 - -11.2  -3.21276   CGCTCGCCTACAACA     CGCGCCCGCTCGACG CGTA CGACGAGCCGGC-CG      AGCAGGCCTTCATGC  64 108
        glpK NONE
JRI60_RS05670 NONE
JRI60_RS05665 NONE
JRI60_RS05660 1323768 .. 1323796 - -13.1  -2.84276   ACGTTGAACCAATCA        TCACCCCTCTCCC TCC GGGAGAGGGACGG        GGTGAGGGTATCTCG  69 479
JRI60_RS05615 1310395 .. 1310418 -  -2.2  -3.28712   CGTCGCCTGCGACAA          CGTCCACCCG CTCT CGGGCCACCG           ATGGGTTCGCGGTCC  44 205
JRI60_RS05610 NONE
JRI60_RS05605 1308903 .. 1308915 -  -4.7  -3.53811   GGGAGCCCCTGGAAA                CGGGG ACG CCCCT                CCTACCAGTACCGGC  52 27
JRI60_RS05600 1308008 .. 1308030 -  -5.4  -3.21912   CTCGGAACCTAGGAA           CCGGATTCCC GAT GGGCACCTGG           GACAGGCGGTCGGTG  51 112
JRI60_RS05595 NONE
JRI60_RS05590 1305880 .. 1305902 -  -4.6  -3.06302   AGCATCCTCATCGAA           TCGGCCGTGC TGG GCGCGGCTGG           AGGGGTGCTGGGCGC  45 275
JRI60_RS05565 1301270 .. 1301291 -  -5.7  -3.29511   GGCACTCCTCTACAA           CGCCCCTCG CGCA CGAGGGCCC            GGCGACTGGCTCGTC  51 129
JRI60_RS05545 NONE
JRI60_RS05540 1295988 .. 1296012 -  -5.6  -3.31144   TGGCGAGGGCGAGAA          TCGTGAGCGA GAGCA CCGCCCCCGA          GCCTACCCGGGCTCC  51 166
JRI60_RS05535 1295057 .. 1295079 -  -6.2  -3.31144   GCTCGACGCGGACAA           CCAGATTCCC AAC GGGAAGCTGC           CGGGCAGCTCGCGGT  53 158
JRI60_RS05525 1293811 .. 1293825 -  -4.2  -2.72471   CTCGCATCAGATAAT               CGAGCA GCA TGCTGG               GAACTTTGGAGGCCT  41 79
JRI60_RS05520 1293432 .. 1293480 -  -5.2  -4.07568   CGTTCCTGGGGAAAA GA-CCCTCACCCCAGCCCTCTCCC AGA GGGAGAGGGA-GCGGCCAGTGCTC AACGCCCACTTGCAA  64 45
JRI60_RS05510 1291965 .. 1291986 -  -9.4  -2.74488   CAATCACTGGAACGA           GCGGACGG ACAAGA CCATCCGC            GTCCGCATCAACGGA  54 213
JRI60_RS05490 1287196 .. 1287225 - -25.1  -3.22409   GAACGATCAATTGAA       CGGGGCAGCGGGT TTCA ACCCGCTGCCCCG        ACAGGTCCCCCAGTC 100 81
JRI60_RS05470 NONE
JRI60_RS05465 1276301 .. 1276329 -  -9.4  -3.09635   ACGCCGAGGAGGGAA        GTGCGCCCGGCC CGTTC AGCCGGGCGGTC        TACCTCGGCTCGCTG  59 310
JRI60_RS05455 1275240 .. 1275261 -  -2.1  -3.50332   TAGCCAGACAATCAA           GCGCCTGAC TGAT GCCAGGTCC            CGAGGGTACGGGCCA  48 259
JRI60_RS05445 1271553 .. 1271574 -    -3  -3.35996   CAGGGCGATGGATAA          CGGCCTGACG CGAG CG-CAGGC-G           TCCGAGATGCTCACG  47 233
JRI60_RS05430 1268281 .. 1268296 -  -4.6  -3.90291   ACGCCGGGAAGTAAA              TGGGCT TTGA AGCCCT               GGTTGAGAATAGGCC  61 137
JRI60_RS05425 NONE
JRI60_RS05420 NONE
JRI60_RS05415 1266208 .. 1266257 - -10.8  -3.05384   GGCTGGCCGATCGAA CGGCGTCTGGACACAGCATGCGGAG CGG CGCCGCA-GCTGGG-C-AGACACCG TGCCATTCATGGGCT  62 122
JRI60_RS05410 NONE
JRI60_RS05405 1264525 .. 1264537 -  -9.1  -3.55622   CGGAACCTCTGGAAA                TGCGG CGT CCGCA                GATGTGCTTGATACG  64 403
JRI60_RS05395 NONE
JRI60_RS05390 NONE
        tnpB NONE
JRI60_RS05380 1260752 .. 1260764 -  -9.1  -3.06261   GCGTAAGCCTCAACA                CCAGG CGC CCTGG                GGTGGCGCTCGCGCC  57 218
JRI60_RS05365 1256991 .. 1257003 -  -9.1  -3.06261   GCGTAAGCCTCAACA                CCAGG CGC CCTGG                GGTGGCGCTCGCGCC  57 251
JRI60_RS05360 1252884 .. 1252915 -  -2.9  -3.22113   ATGCTGTCAGAAAAT      GGCGG-GAGCCGGA TATCC TCCAGGTGACCGCC      CGCACGAGGCGGATG  46 75
JRI60_RS05355 1251993 .. 1252004 -  -7.2  -2.50816   GCGTGACGCACGAAG                GCGC GGGC GCGC                 TCGGTGGATTCGAGG  47 184
JRI60_RS05350 1251450 .. 1251475 -  -2.3  -3.21099   GTCTGCCATTATGAA         GACCGCGCCCC ATCT GGCGAGTGGCC          AGAAGGCCATCTTTC  42 87
JRI60_RS05345 1250601 .. 1250621 -  -3.8  -3.88137   AGAAGGTGCCAGAAA            GGCCGGGG GGACG CCCAGTCC            ATGGAGATCATCAAC  57 46
JRI60_RS05340 1249841 .. 1249855 -  -4.9  -3.53012   TTTCTCCTCTGGAAA               GCGCG GTCAT CACGC               GGAGGAGGTCTCCCG  52 305
JRI60_RS05335 1249300 .. 1249350 -    -6  -2.62184   GCGTCGGCGAGACTA GCGCCCAGACTCCTGCCGCGCACC TGATG GGAGGGCGGCAGGGG--TAGGCGT GTACCCCAAAGTGGC  46 175
JRI60_RS05325 1247264 .. 1247295 - -12.2  -2.78384   TGGCGCGCGACGAGA      GCGCG-CCACGCGCG ATG CGGGAGTGGGCGCGC      AAGCTGGAGGCCAAG  60 367
JRI60_RS05305 1244504 .. 1244518 -    -7  -3.27298   GGCTCGAACGAGGAA               GCCCTG AAG CTGGGC               CCGGATCAGACCGTG  51 228
JRI60_RS05295 1241180 .. 1241202 - -11.3  -2.87344   GAGGCCGGGGAGATA           GACGTCGCG CTCGT CACGACGTC           GGTGGTCCCTCGCGG  59 510
JRI60_RS05285 1239704 .. 1239725 -  -5.7  -3.31817   AAGGACCAAATCGAA           CGGACGCGC TTGG ACTCGCCCG            GACAGATGGGAGCCC  51 287
JRI60_RS05265 1235985 .. 1236003 -  -5.8  -3.14132   CCCTCTTGGCAGGAA             GGGGCGGC TCA GTCGTCCC             GCTCGATCTGTCGGT  49 134
JRI60_RS05260 1234584 .. 1234613 - -19.3   -3.1978   ATTCTTATATGAAGA       CTGCCCGCCCCAG AGAA CTGGCGCGGGCAG        TTGTTGCTCAGGGAA 100 80
JRI60_RS05240 NONE
JRI60_RS05215 NONE
JRI60_RS05210 1218214 .. 1218239 -  -3.9  -3.64703   TCTGCCTGACGCAAA         TCGCCCGAC TGCTGAGT GACGAGCGA          ATCGTCTTCGGCCGC  54 154
JRI60_RS05190 1213758 .. 1213787 -  -2.7  -3.62597   GGGAGCCCGGAAGAA       TGCCGCGC-AACCG TAA CGGTTGGAGCGCCG       GGGAACAACCTTCAA  53 78
JRI60_RS05185 1213319 .. 1213347 -  -2.2  -2.71712   GGCGGGCGCGTAAAG       CGGTTGGGGGGCG GGAG CGTCCGCCG-CCG        TTCAGGCGATGCGAC  38 27
JRI60_RS05180 1212802 .. 1212816 -  -9.2  -3.61398   CCCTCCCCTCAATAA               CCCCGC TCG GCGAGG               TACAGGTCCACCAGT  64 4
JRI60_RS05175 1212157 .. 1212179 -  -3.2  -3.01712   GGGCGCGCTCGAACA           CTCAGCTCGC CTT GCGCGAGGAG           GCCTGCTTCGTCTTG  42 4
JRI60_RS05170 1211566 .. 1211583 -  -7.7  -3.13403   GCCGGGCGAGGAACA             CGAGGGT GACG ACCCTCA              CCCCCCGCCCTCTCC  54 99
JRI60_RS05160 1207719 .. 1207740 -  -7.1  -3.14132   CGGCCGGCGTACGAA           GCTGCAGGC GAAG GCCGGCGGC            GACTTCCTGGGCGGG  51 393
JRI60_RS05150 1204726 .. 1204744 - -10.2  -3.59979   CTCGGTGAGCGGAAA             CCCGGCTG ACT CAGGCGGG             CGGCTCCTCCTCCTT  67 17
JRI60_RS05115 1198526 .. 1198536 -  -8.2  -3.30124   CCGCATCCTCGAGAA                 GCCG GTG CGGC                 CCGAGGAGCTGCTGG  58 101
JRI60_RS05105 1195413 .. 1195435 -  -6.9  -3.71848   GGTGCTGAGCAACAA          GCCGGACGCG TCCA CCCG-CCGGC           TGGTGGAGGCCCTGC  59 332
JRI60_RS05080 1191550 .. 1191562 -  -9.1  -3.22223   GAACCTCATCACCAA                CGCGT GTC ACGCG                ATGCAGCCGGGCGGG  56 391
JRI60_RS05050 1184054 .. 1184081 -  -3.3  -2.83403   CGTGGTTCAGGAAAG        GGGGCGC-AGCC TAGAC GGCTCGCGTGCC        GGTTACGTGAACCAG  41 28
JRI60_RS05045 1183011 .. 1183056 -  -4.8  -3.31144   GTTCGAGGCCCACAA CGCGGGCG--TGGATGGTTCG GATGGCT CGA-CCACCCAGGCGGCCGCG GCCTCGCCGGGCGCG  49 320
JRI60_RS05030 NONE
JRI60_RS05025 NONE
JRI60_RS05020 1176574 .. 1176611 -    -4  -3.05844   TCGCCTACGCGAAGA  CGCTCTCC-GGGGCGCAG GCCT CTCCGCGCCAGGTG-GCG   GCGCTGGAGAAGAAG  45 84
JRI60_RS05010 NONE
JRI60_RS05005 NONE
JRI60_RS05000 1170460 .. 1170475 -  -4.7  -3.63782   GAACAGGACCGTAAA              GGTCA TTTCTT TGACC               CTATGTTTGAAGTCA  55 211
JRI60_RS04995 1169871 .. 1169888 -  -6.9  -3.18023   GGACCACCATCAACA             TCGCCGC GAGG GCGGCCA              TTCTTCGGGAAGGGT  52 164
        traA NONE
JRI60_RS04985 1165972 .. 1165997 - -11.3  -3.53091   ACCGGGTGGGCCAAA         TCCACTTCTCA CCGG TGAGAAGTGAA          ACCGGTCCTCCGTAG  70 127
JRI60_RS04975 1163779 .. 1163791 -  -2.6  -3.14132   GCTCTTCGCCATCAA                CCCC TTCCC GGAG                CACCCGCCGCGCTAT  44 204
JRI60_RS04965 NONE
JRI60_RS04960 1160716 .. 1160729 -  -3.7  -3.61398   GTGCGGGGTGAAGAA               CGGGG AGCT CGCCG                TGGTGCGGGGGCCCG  53 101
JRI60_RS04945 1157047 .. 1157075 - -19.6  -3.14344   CAGGCGCGTGACGAA       GGGCGGCCCGTGC GTGA GC-CGGGCCGCCC        GGGTGCTCTGACCGC 100 470
JRI60_RS04930 NONE
JRI60_RS04925 1152357 .. 1152378 -  -4.4  -3.21395   AGCCCGGCGAGAAGA           GCC-CCGAG GAGCG CTCGAAGGC           CTGAGCCGGGCGCCC  47 43
        kefC 1139653 .. 1139673 -  -9.7  -3.51329   CACGTGGAACGACAA            CTACCTCTG CTA CTGAGGTAG            GGCGGGGTTGACGGG  64 79
JRI60_RS04865 1137206 .. 1137221 -  -6.8  -3.16881   CATCCAGCTGAGGAA              CACGAG CGTT CCCGTG               AGAGTCGCGAGTCTG  52 109
JRI60_RS04860 1135999 .. 1136011 -  -6.9  -3.44622   GACCTCCACAATGAA                CCGCC CTC GACGG                TGGCTGTGAGCTATC  56 158
JRI60_RS04845 1133563 .. 1133578 -  -2.5  -3.64703   GTTTGTTTAGCGAAA              CCGTA AGAACG CACGG               GCCGCTTCTCGCCCG  51 1
JRI60_RS04840 NONE
JRI60_RS04835 NONE
JRI60_RS04830 1127175 .. 1127217 -  -9.1  -3.76767   GGAACAAGAGAAAGA CGCCCTGGACGCCCGCCGGTG CTG CACTGGTGGGT-TCCAGG-CG CAAGGAATTGAAGGC  67 501
JRI60_RS04810 NONE
JRI60_RS04805 NONE
JRI60_RS04800 1118224 .. 1118239 -  -5.4  -2.90075   CGCTCTTCAACGAGA              TCG-CCG ACC CGGCCGA              GCTGTTCGAGGTCTT  46 333
JRI60_RS04785 1115425 .. 1115436 -  -7.2  -3.09834   CACCCCATCATGGAA                CCGC CGAG GCGG                 TGGTGGCCACGCTCT  52 6
JRI60_RS04780 1114954 .. 1114977 -   -11  -3.23853   TCCGTTGAAGGAAGA          GGCGGCAG GATAGCGG CTGCCGCC           ACGAAGGGTGCCGGG  66 70
JRI60_RS04775 NONE
JRI60_RS04770 1111994 .. 1112009 -  -3.2  -3.53224   TACGGGGTTGGCAAA              CCCG TGGAAGTG CGGG               TGAACGCGGGGATGG  50 295
JRI60_RS04760 1107945 .. 1107963 -  -3.1  -3.34233   GTACAAGCTGGAGAA             CGGCA AGTACGTGG TGCCG             GTGCCCATCGAGCAG  47 445
JRI60_RS04685 NONE
JRI60_RS04680 1094408 .. 1094419 -  -5.8  -3.05384   GGCTGCCCGAGTCAA                CGGT GCGA ACCG                 GTTGGATTCCACGCA  47 72
JRI60_RS04675 NONE
JRI60_RS04670 1092699 .. 1092723 -  -9.9  -3.61398   GGCGGCGGCGAAGAA          GGCCCCCGC GAAGAAG GCGGCGGCC          AAGGCTCCGGCGAAG  67 238
JRI60_RS04660 NONE
JRI60_RS04655 1089776 .. 1089790 -  -3.4  -3.14211   ATGGCCCCTGACTAA               CGGCAC GCG GCGCCC               GCTTCAACCGGGGAA  44 70
JRI60_RS04650 1089141 .. 1089169 -  -7.3   -3.6968   CCACAACCCCAACAA        CCTGGTGCACATG CTG CAGGTGCACCTGT        CGATGAGCCTGGAGG  61 274
JRI60_RS04635 NONE
JRI60_RS04630 1083898 .. 1083944 -  -4.3  -3.64703   GTGGCGTGACCGAAA CCAGGCTTCGTGACGAGGCCGC ATCA GCGGCCTTGCCA-GAGGGATGA TCGACGGGTGAGACG  55 199
JRI60_RS04615 NONE
JRI60_RS04610 NONE
JRI60_RS04605 1079356 .. 1079372 - -10.1  -3.03124   TGGGATGGTGGAACA              CCCCCTG CGT CAAGGGG              TGCTCAGGATCGTGG  60 29
JRI60_RS04600 1078545 .. 1078572 - -14.2  -4.54727   GGGGGCAAAGGAAAA        GCCCAGCAACCC CGTG AGATTGCTGGGC         TTCCCAGGTTGTCCC 100 76
JRI60_RS04590 NONE
JRI60_RS04585 1076537 .. 1076584 - -21.4  -4.07568   GCCGGGGCCCGAAAA CACCAAGGCCGGAAACCCCTGA CGAA TCAGCGGCTTCCGGCCTCGGTC TGTGTGTCCCTTCTC 100 39
JRI60_RS04550 1068664 .. 1068703 - -13.5  -2.71731   GGTACGGGGGAAGCA  CGTCGGGAAGGGGCCGC TGGGGG GCGGCTCCTTCCCGATT   CTTTTTAGAAGTTGG  67 30
JRI60_RS04525 1064336 .. 1064350 -  -4.2  -2.62616   TGACCCGCGAGAGCA               CCAACC GGT GGTTGC               GCTTCTACGTGCGTG  41 182
JRI60_RS04515 1061862 .. 1061879 -  -2.5  -3.31144   CGGGCAGTGGCAGAA             GCTCGGG GTGG CGCGGGC              CTTCATGCGCGAGGA  45 325
JRI60_RS04470 1052850 .. 1052873 -  -6.6  -3.01712   GCCTGGGCGGGAAGA          GCACGCTGGA GTTC TCCCGTGTGC           GGCCAGGGGGCTTTG  49 505
JRI60_RS04460 1051285 .. 1051313 -  -4.4  -3.43676   CGGAGCAACGGAGAA       GGGCCGCGC-CAG TGGT CGGAGCAGGGCCC        CCGGTCCGCGGAGCA  51 371
JRI60_RS04445 NONE
JRI60_RS04440 NONE
JRI60_RS04435 NONE
JRI60_RS04430 NONE
JRI60_RS04425 NONE
        cheB NONE
JRI60_RS04415 1039069 .. 1039102 -  -6.5  -2.78384   TGTTCCTTCACCACA     GCGGGCAACTCGAGG CCTT CCGGGAGTGGCTCGC      TTCTCCTTCCACCGT  46 305
JRI60_RS04405 1036401 .. 1036430 -  -8.5   -3.7941   CATGGCCGACAAGAA       GGAGTCACCCCCGG TCT CCTCGGGTG-CTCC       CGATGGCACGAAAGA  67 522
JRI60_RS04395 NONE
JRI60_RS04390 NONE
JRI60_RS04385 NONE
JRI60_RS04380 1031151 .. 1031185 -  -6.9  -2.75481   CGTCAACTTGAACGA     CGAGCGCGGCTGGCC GGCGG GGCCCTTCGAGCTCG     TCTTCTGCCGCAACG  46 224
JRI60_RS04335 1021671 .. 1021701 -    -4  -2.52464   GTGCGCGTGAAGGGA      GT-GGCCC-GCGTG TCTAG CACGCCGGGACGAC      GTATCGGGGCGGGCG  40 74
JRI60_RS04330 1019565 .. 1019577 -  -4.7  -3.67597   GGGCCCAGGCAACAA                CCTGG GCA CCCGG                AGTGTCGTCGGCTCG  55 79
JRI60_RS04325 1018543 .. 1018563 -  -4.8  -4.13945   ATCCTGAGTGGAAAA           GAGGTCTCA CGCG TGA-ACCTC            TCCCCCCCGTCCTCC  62 11
JRI60_RS04290 NONE
JRI60_RS04285 1009337 .. 1009367 - -18.3  -2.84325   GCTCCGGAAAGACGA       GGGCCCGCTCCCC GGTGA GGGAAACGGGCCC       GCCGCGCCGCGTGTG  86 48
JRI60_RS04280 1008169 .. 1008213 -  -9.7  -3.05844   TCCTGGAGGCGAAGA CCCTCACCCCGACCCTCTCCC AGG GGGAGAGGGAGGGCGGGCGCG CGGGACTCAGTGGGT  57 32
JRI60_RS04255 1000871 .. 1000887 - -10.8  -3.52906   CAGAAGCGGACAGAA              GCCCCG GCTCG CGGGGC              CCTCCACCCCGGTTC  70 353
JRI60_RS04220  991989 ..  992032 -  -8.7  -2.70932   GGTGCCTTCCAAGGA GGGACAGGCGCTCGC-CCGC GATGT GCTGCGCGAGCTGCTGGCCC GCTCGGAGAACCCCG  51 324
JRI60_RS04210 NONE
JRI60_RS04205  989143 ..  989153 -  -8.2  -3.01712   TGGGGGCTCGCAACA                 CGCC CCA GGCG                 CGGCTGAGCGGGTTG  54 462
JRI60_RS04185  983770 ..  983788 -  -3.7  -3.51329   GAGCGCGAAGGAGAA             CCCCGGC GAGCA GGCGGAG             GCCGCGGTGACCAAC  50 165
        atpH  981233 ..  981247 -  -7.1   -2.9415   GAAAGGAGGGAGACA               CGGGT TGGGG ACCCG               CGCCGTCACCATAAC  50 132
JRI60_RS04170  979616 ..  979626 -  -2.4  -2.84528   AGAGAAACCTGAAAT                 GGCC GGG GCCC                 CCTTACCACGCGCCC  40 131
JRI60_RS04165  977945 ..  977984 - -16.5  -4.10925   ATACACGGGGGAAAA  CACGAAGCCCCGCGTTCC TCTTG GGAACACGGGGCT-CGGG  GTGAGGCTTCAGCTC  95 54
JRI60_RS04145  972442 ..  972469 - -11.4  -2.57132   TGGTTTTTCGAGAAG        TGACCATGCTCA TTTA TGAGCATGCTCA         GTTTTTCGGCGCGGC  61 79
JRI60_RS04140 NONE
JRI60_RS04135 NONE
JRI60_RS04130 NONE
JRI60_RS04125  969250 ..  969288 - -12.4  -3.01712   CCGGGGCGCGGAAGA   CCCTCACCCTTTCCCTCT CCC AGAGGGAGAGGGGGAGAT   GTCAGATGTTCAGGC  67 27
JRI60_RS04095 NONE
JRI60_RS04090  957781 ..  957821 - -12.6  -3.85698   CCTCTCCTGGAGAAA TGA-CGAGGCCCGGCACCCC TGG AGGG-GCCGGGCCCGGGTCA CCCGATGTTGCTCCC  81 57
JRI60_RS04085  956370 ..  956383 -  -3.8  -3.40522   ACCGGCGGAGCACAA               GCTC TCGCCG GAGC                AGGTGGAGCGGGAGC  47 124
JRI60_RS04070 NONE
JRI60_RS04065 NONE
JRI60_RS04060  950933 ..  950945 -  -7.7  -2.98823   CCGCTCCCAGACACA                GCCAT TTC ATGGC                GTCCCCCGCAGGATG  53 19
JRI60_RS04055  950216 ..  950235 -    -2  -3.28712   CGGGCTGTCCCAGAA            GTTAGGGA CGAT TCCCGATC             GCGGCATGGTCCTAG  44 37
JRI60_RS04050  949596 ..  949636 -  -4.6  -2.72344   TTCCACTCCGAAGTA GCGCATGGTGGCCCCGAGCA TAT CGCCCGGGGTC-C-ACGCGT GTATGCCGAACGTGT  43 42
JRI60_RS04045  949127 ..  949142 -  -4.6  -2.75064   CGGGGCATGGAACCA              CGGCTG GAGG CAGGCG               GGAGAGCAAGGCCCC  43 77
JRI60_RS04040  948409 ..  948429 - -11.1  -3.48276   TTCCTCCGGACAGAA            CCTTCCCCA AGG TGGGGATGG            GCGGCGCGTGAAGCG  68 58
JRI60_RS04035 NONE
JRI60_RS04030  946196 ..  946231 -  -8.9  -3.85704   CTAGGAACGAGGAAA    CGGGGCGTCACCGGGC ATGCG GCCAGGC-ACGTCCCG    AGGGTTGGCCGGTGC  68 415
JRI60_RS04020  945716 ..  945731 -  -3.9  -3.14132   GCTGGCCGGCAGGAA              GCCGG GGCGCA CCGAC               GCGGGGCAGGTCACC  45 161
JRI60_RS04010 NONE
JRI60_RS04005 NONE
JRI60_RS04000  940407 ..  940438 -  -6.6  -3.28924   CATCTCGCTCGACAA      CCTCGACG-CCAC CACCCGC ATGGTCGCCGAGG      CCCTCCACACGCTGG  53 94
JRI60_RS03980  935326 ..  935340 -    -7   -3.4252   CCCCACCTACCAGAA               GGTGGC CGT GCCTCC               GGAGATCCGCGCCGC  53 93
JRI60_RS03970  932872 ..  932885 -  -3.7  -2.91276   GGCCCGCTGAGAAAT               CCGTG CTAC CCCGG                GCCGGGAGGCCGAGG  43 67
JRI60_RS03965  932145 ..  932158 -  -2.3  -3.19522   CCACCGAAGACGGAA               CCCTT GGGC ATGGG                GTGGGTTTAACGCCG  42 54
JRI60_RS03960  931005 ..  931038 -  -9.5  -3.02461   GAACGCGGGTGAAGA     CCCTCACCCCCCG CCCTCTCC CAGAGGGAGAGGG      AGCATGCGCAACACT  57 39
JRI60_RS03945 NONE
JRI60_RS03940  923984 ..  924012 -  -8.9  -3.35679   CCGGGCCATCGAGAA        CCACGCCCA CAAGCACAACC TGGGCGTGG        TGCGCGCCTTCTGCG  58 275
JRI60_RS03930 NONE
JRI60_RS03925  920542 ..  920570 -  -3.2  -3.52009   AACGACAAACAGGAA       TGGGTGCTGGCGTG GGT CA-GCCAGCACG-A       GGCTCAGCCGTTTCG  49 13
JRI60_RS03920 NONE
JRI60_RS03915  919196 ..  919210 -  -8.6  -3.14132   GCGGTCTCGGACGAA               TCCATC GAG GATGGA               GGCGCGCTCAATCTC  56 398
JRI60_RS03900  916369 ..  916390 -  -2.9  -3.66018   CTACGACTGCAAGAA           GCCCGCAGGC TGC GCCTGCT-AC           TTGGTTAGTAGGGCG  53 30
JRI60_RS03895  915665 ..  915680 -  -7.5  -4.07568   GCTCCTCGGGCAAAA              GGGCG TCTACC CGCCC               CCGTCCTCCGTCCGC  69 50
JRI60_RS03890 NONE
JRI60_RS03885  913459 ..  913477 -  -6.6  -3.16668   GAACACGTGGACGAA             CCAGGCCC GGG AGGCCTTG             CTGCAGCGACGGAGC  51 388
JRI60_RS03875  912160 ..  912170 -  -2.4  -2.62735   ACACGCTGGAGATGA                 TCGC CCT GCGT                 GCCCTGCCCAGCCGC  38 213
JRI60_RS03860 NONE
JRI60_RS03845  905201 ..  905213 -  -6.2  -2.77899   CCTCGTGAGGAATGA                GCGC GTGTG GCGC                CGTCGTCATCCCCAG  47 85
JRI60_RS03840  904865 ..  904877 -  -4.7  -2.94099   CGGTCCCAGCATAGA                CCGCG AAT CGCGC                CTGTCCCCGTTTTGT  44 51
JRI60_RS03835  904125 ..  904155 -  -2.3  -2.75183   ACTCGGAGGTAAGGA       CGCCCGGGCGGTT TTTCC ATCCCCCCGCTCG       CTCGGGTGCCGGTCT  38 49
JRI60_RS03830 NONE
JRI60_RS03825 NONE
JRI60_RS03795  897482 ..  897499 -  -6.2  -2.78384   TCCGCCCGGAGGACA             GGCGCC GTTGGG AGCGCC              GGTTCCTCGACTGAC  47 54
JRI60_RS03785 NONE
JRI60_RS03780  893191 ..  893227 -  -7.2  -2.52896   TGAGTCTCCAAGCGA   CGCGGCGCTCGCTCTCCG GTC CGGGGAGCG-G-GCCTCA   CTGCTTCAGGTTGGG  47 23
JRI60_RS03775  888936 ..  888966 -  -5.2  -3.44051   GCCCCACGACGAGAA       CCAGCGCACCGCCA AGC TCGCCGCGCGCCTG       TTGTTGGAGGTGCTC  53 59
JRI60_RS03765  887271 ..  887283 - -10.5  -3.31144   TCCGGACCGGTACAA                CGCGG AGG CCGCG                GCCGCCGCCTGGGAG  64 93
JRI60_RS03750 NONE
JRI60_RS03745 NONE
JRI60_RS03740  880691 ..  880701 -  -8.2  -2.71731   TGTAGGCGGGAATGA                 CGCG GAC CGCG                 ACGAGGAGCCGGTGG  52 82
JRI60_RS03735  880243 ..  880281 - -21.1  -2.62184   GTCGCGCGGAGAGCA  CCCCACGGCACGCTCGGCG GAG CGCCG-G-GTGCCGCGGGG  CTCTCGACGACGTCA 100 54
JRI60_RS03730 NONE
JRI60_RS03725 NONE
JRI60_RS03720 NONE
JRI60_RS03715 NONE
JRI60_RS03710  874269 ..  874284 -  -2.4   -3.6682   CCGCACCGAGGGAAA              CACCTG CTTC CTGGCG               CTCCAGGAGGGCGAG  51 315
JRI60_RS03700  872355 ..  872392 -    -4  -2.80344   GCGTCATCGAAGAAT  GC-GCGAGCCCACATGGG TCAT CTCCTG-GGGCGCGCAGC   CTAGCCGACCGGTCC  41 78
JRI60_RS03695 NONE
JRI60_RS03690  869884 ..  869899 -  -4.6  -2.92463   GCTATCAGGGAGACA              TCCGTC ACCT GACGGG               GTCGGTCGGCTCGCT  44 258
JRI60_RS03680 NONE
JRI60_RS03675 NONE
JRI60_RS03670 NONE
JRI60_RS03665  864468 ..  864495 - -13.4  -3.05844   CCCCGCAGCGCAACA        CCCTGCGCGTGCG CAC CGCGCGCG-AGGG        CGAGCACGTGCGCAT  66 295
JRI60_RS03650  858201 ..  858211 -  -2.4  -2.69947   CAACTCGCAGATAAC                 GCCC ATT GGTC                 CCACCGACAGCCTCG  39 343
JRI60_RS03625  850758 ..  850776 -  -4.5  -2.83747   GAAGGGGGAGAAGTA            CGGCCACG ACGA CG-GGCCA             CGGGTAGGGGAATGC  44 205
JRI60_RS03620  848751 ..  848803 -    -4  -3.91281   GGAGATAAAAATCAA GGCGGACCTGCG-CACCTTCCGGCCC TCC GCGCCGG-AGGTGGCGGAGATGATCC GCGCGGTGCAGGAGT  61 352
JRI60_RS03595 NONE
JRI60_RS03590 NONE
JRI60_RS03585  842705 ..  842717 -  -3.3  -3.23216   CGTGACGAGCATCAA                GGTGC TGG GCAAC                GCGTGGTTCCCGGAC  45 173
JRI60_RS03555  836380 ..  836416 -  -3.6  -3.12351   CGGGCCGACAGGTAA   CGGTGGTTCGGGC-CTGA CCG TCAGTGCCCGTTGC-CCG   TGACGCGGCGGATGG  45 9
JRI60_RS03540  833066 ..  833077 -  -5.8  -2.67515   CCGAGGAGGAGACGA                CCTC GGCG GAGG                 TGCCCGCGCGGCCCA  43 187
JRI60_RS03525  829037 ..  829050 -  -3.7  -3.09491   CATACACGGATTCAA               CCCTG GAGG CTGGG                GGGGCCTTCCGGCGG  45 8
JRI60_RS03520 NONE
JRI60_RS03515 NONE
JRI60_RS03510 NONE
JRI60_RS03505 NONE
JRI60_RS03495  824203 ..  824233 - -10.3  -3.14132   CTTCGCCCGGACGAA       CGCCGCCAACGCG GAGCT CGGGCTGCCGGCG       GGGGTCTGCAAGGCG  62 407
JRI60_RS03480  819052 ..  819071 -  -9.2  -3.09516   GGCGGGAGGAGGCAA            TGGCCGCG CCCT CGCGGCAA             TTACACACGGTGGGG  59 70
JRI60_RS03465 NONE
JRI60_RS03460  813826 ..  813838 -  -3.3   -2.7094   CCGTACCCAGAGAAG                CGCGA GCG CCACG                GCGGAGGCCAATGCC  40 165
JRI60_RS03455 NONE
JRI60_RS03450 NONE
JRI60_RS03445 NONE
JRI60_RS03440 NONE
JRI60_RS03435  802346 ..  802357 -  -5.8  -2.70932   CCGCCCGTGCAACCA                CCCT GACC AGGG                 GCCCTCGGTGGCGCT  45 40
JRI60_RS03425  795344 ..  795391 -  -6.3  -3.14564   GCAGTTCGTCATCAA CGGTGGG-T-AGTCGCACC-CGGC CAT GACGTGACGCGTCTCAGCCCACCG CGCCCAGGATGGAGA  51 15
JRI60_RS03410  789547 ..  789564 -  -6.2  -3.40403   CCGGCTCGATGAGAA             CGGCGG TGCTCG CCACCG              TGCCGTCGTTCCACG  55 60
JRI60_RS03400 NONE
JRI60_RS03395 NONE
JRI60_RS03390  783755 ..  783778 -  -5.2  -2.73221   CGAAGAAGGAGAGGA          CGCCGCGA GTGGACTT TCGCGGAG           TTGCTGAGGAGGACG  44 138
JRI60_RS03375 NONE
JRI60_RS03370  779839 ..  779879 - -20.3  -3.55563   ACGGCACTCTCGAAA  GGACAGCGGGGGCCCCCCG AGC CGGTGGACCCCCGCTGGGC  ACTACCCGACGTTTC 100 47
JRI60_RS03365  779062 ..  779074 -  -4.1  -2.66435   ACGCGCATCACAGGA                CACCT CCC AGGTA                CAGCAGGCCCACCTG  40 5
JRI60_RS03360 NONE
JRI60_RS03355  777362 ..  777398 -  -7.2  -3.01712   GGTTGCCCGCCAATA   CCGGGAGGTGAG-GGCG GTAT CGCCCCCCACCTCTAGA    AGGCGAGGCCCAGCT  51 21
JRI60_RS03345  772760 ..  772770 -  -2.4  -3.86935   CAACGACGACAAGAA                 GCCC AAG GGCC                 GTTAGCGGTCCGCGC  54 43
JRI60_RS03325 NONE
JRI60_RS03320 NONE
JRI60_RS03315  766065 ..  766085 -  -5.3  -2.62184   TTCTTCGTCAGACCA            CGGTGACGG GTA CCCTCACCC            CGTCCCTCTCCCGGA  44 20
JRI60_RS03310  762938 ..  762948 -  -2.4  -2.72344   TGGCATCTCCAAGGA                 GGAG CTG CGCC                 ACCTCTTCGCGCCCT  39 265
JRI60_RS03265 NONE
JRI60_RS03255 NONE
JRI60_RS03250  747724 ..  747738 -  -3.4  -3.37354   GAGACTGAGTCAGAA               CGTCCC CGA GGAGCG               CCCGCCGAGCTCCGG  48 201
JRI60_RS03245 NONE
JRI60_RS03240  745674 ..  745701 - -11.9  -3.60627   TTAGGGCAGGGGAAA        GCCCCGGGGGC GAGAGG ACCACCGGGGC         TTCGTGTGTGACTCG  72 44
JRI60_RS03230  743563 ..  743613 -  -6.7  -2.58544   TTCGATCCGCAGAAG CTGCGCGAGCAGGTGCGCGACTGGG TGG CCAAGGCGCGCACC-G-TGGAGCCG GGCCAGGCGGCCTGA  47 56
JRI60_RS03215  738266 ..  738320 -  -9.1  -3.34398   CGCTCCCTTGAAAGA CGCTCGTGGGGTGCCCGGGCCGAGGA GCGC TCCGTTGCCCGCT-ACCGCACGAGCG GGCACGCGGGCGGTT  61 453
JRI60_RS03195 NONE
JRI60_RS03190  734602 ..  734622 - -15.5  -3.15544   CGCGAGCCGGACGAA            CTGGTCCGA TTG TCGGACCAG            TTGCTCCCGAGCGCG  78 95
JRI60_RS03180  732245 ..  732268 -  -4.4  -3.04322   TGTAACCCCGGAATA          CCGGGCGGGGC CAT GGCCC-CTCGG          AGAGGGTGGGTCGCT  45 66
JRI60_RS03175 NONE
JRI60_RS03130  722780 ..  722831 -  -7.4  -2.70932   TCCGTTCCCGAAGCA TGC-CG-GACGTC-CCGGGCGCG CGCATCTTT CGCGCCCGGAGAGGTCTCATGCA CGCGACCCTCTCACG  51 55
JRI60_RS03125  720102 ..  720112 -  -6.8  -3.14132   CTTCCTGGGCACGAA                 CGAG GAC CTCG                 CCAACCAGCTCGAGG  51 409
JRI60_RS03115 NONE
JRI60_RS03110  716444 ..  716492 -  -9.4  -3.68988   CTGGATCGAAGAGAA CCTGGGCCGCGTCCTGGCCGCACG CGC CGAGCGGC-AGGCC-CGGCGCGAG AAGGACTAGTGTTGC  68 287
JRI60_RS03100  715082 ..  715092 -  -4.6  -3.35679   CGGTTTCACGGACAA                 GGGC ATC ACCC                 TGCGCGTGTCCTGGA  51 52
JRI60_RS03070 NONE
JRI60_RS03065  706502 ..  706519 -  -5.5  -2.73875   CCTCCTCCAACAGGA             CGCGGAA CTTC TTCCTCG              GTGCGCTCCTTGCCT  45 175
JRI60_RS03060  702453 ..  702469 -  -2.1  -2.53263   TGGACGTGGAATTCA              TGCGCGC GGG GTGTGCA              CGGGGCGGGCCATGG  37 103
JRI60_RS03055 NONE
JRI60_RS03050  699474 ..  699484 -  -5.4  -3.16564   GCGGCACGGCATCAA                 GTGA GTC TCAC                 GCCGCGCGCCGGGTG  49 22
JRI60_RS03035  696024 ..  696060 -   -10  -2.80816   TCGCCATTCACGATA    CGCCGCGCGCCAACGA GACCT TCGCCGAGGCCCGGCG    GATGCAGTCGCGGCT  54 396
JRI60_RS03020 NONE
JRI60_RS03015  692847 ..  692868 -  -4.3  -3.94846   CGATGAAAATCCAAA           GGGGGCG GGTCCGAA CGACCCC            AGGGGAATAAGGGCC  61 42
JRI60_RS03010  692377 ..  692406 - -17.9  -5.07107   GAAAGGGTGAAAAAA       GAAGCCCAGCCTC AAGG GAGGCCGGGCCTC        GTGAATGAAAGGTAA 100 59
JRI60_RS03005  692107 ..  692133 - -15.8  -3.78022   CCCAGATGGACGAAA         GCCCGGAACCGC TTC GCGCTCCCGGGC         CCTGGACGCCAGTCT  90 59
JRI60_RS03000  691139 ..  691153 -  -4.2  -3.64599   GCACGACAGGCCAAA               GCCTTG GGG CAAGCC               GAAGACGGCTCCCAG  54 487
JRI60_RS02990 NONE
JRI60_RS02985  689052 ..  689062 -  -2.4  -3.35679   TCTCTTCAGCGAGAA                 CCTG CTG CGGG                 GATTGTCGGGCTTTC  45 475
JRI60_RS02950  676140 ..  676166 - -19.4  -4.19746   TCGATTCGAAAAGAA         CGCGGGCCGGAC AAT GTCCGGCCCGCT         TGCTCGCTGGTATGG 100 46
JRI60_RS02945 NONE
JRI60_RS02940  674673 ..  674728 -  -8.1  -4.07568   CGGTGCTCCGGAAAA CGC-GAGCGCCCCGGCTCACCGGCTGA CAGC TC-GCCGGGGGACCAGGGCACGGAGCG CTCGTCGTGGCGTCG  69 43
JRI60_RS02935 NONE
JRI60_RS02930  671717 ..  671755 - -20.9  -3.40597   GCGCGCACCCAAACA   CCACGGCCCCCGCTCGC GGAGT GCGCGCGGAGGCCGGGG   GAGTGCCGCTTTTTC 100 53
JRI60_RS02925 NONE
JRI60_RS02920  668464 ..  668476 -  -4.8  -3.65046   GCTGGAGCTCAACAA                CAGG TACTT CCTG                GATGGGCGGGACGCG  55 166
JRI60_RS02895  662842 ..  662867 -  -8.9  -3.00923   GGGCAACACCACACA         GGTGCTCGCCT GGGT AGGCGAGGGCC          GCGCCCCACTGGGCC  54 519
JRI60_RS02880 NONE
JRI60_RS02875  658161 ..  658171 -  -2.4  -2.52896   CGAGGGCTCAACGTA                 CGGG CAC CTCG                 TGGATGTCTGCCCCG  37 7
JRI60_RS02870  657448 ..  657459 -  -3.6  -3.17146   GTGTCCCAGAAGAGA                GGAG GCGG CCCC                 GTGGTGTGAGGCGTC  45 125
JRI60_RS02865  656970 ..  656981 -  -5.8  -2.98823   CCCTCCTTATACACA                CCGT CGTC ACGG                 AGTAGGTGAAGGACC  47 20
JRI60_RS02860  656065 ..  656097 -  -3.4  -3.83998   GGACTCTAGACGAAA     GCTCCG-GACCGA GACAGGAA CCGGCCGCGAAGC      CCCCGAGCCGGGCGG  56 76
JRI60_RS02855  654516 ..  654553 -    -7  -3.25088   GGTGAAACCGAGGAA  GAGGAG-CGCGACG-GGG AGCG CCCTCACCGGGTCTCCTC   CGAGGCCTGGAGCGC  54 11
JRI60_RS02850 NONE
JRI60_RS02845 NONE
JRI60_RS02840  650520 ..  650551 -  -9.3  -3.03124   GGCGATGCGCGAAGA      CTCCGTCCGGGTG GGGACA CTCCCGGTCAGAG       GACGTGCGCCACCTC  57 20
JRI60_RS02835  649635 ..  649645 -  -2.4  -3.32727   CGAACAGGACAGCAA                 CCGC GGC GGGG                 ACAATGGGCGAGTTC  44 136
        rsgA  648367 ..  648406 - -13.5  -2.88579   TGAATGTGTGACAGA  GGGCCCACTGCGCTGGC GGACCT GTCAGCGCAGTGGGTCA   CCGTCTAGTCTCCGC  69 30
JRI60_RS02820 NONE
JRI60_RS02815 NONE
JRI60_RS02810 NONE
JRI60_RS02805  642222 ..  642242 -  -2.4  -3.14693   GCGATGAGCAATACA            CTGCGCGC ATGAG GGGCTCAG            TCTTCCACGGAGGCG  42 120
JRI60_RS02800  640711 ..  640752 -  -6.5  -3.90316   ACTTTCCGAAAAAGA GGAGCCAGAGCGGATCGCGA CAC TGGCCATGCGC-CTGGTTCC AAGCGAAGAAGAGTC  65 398
JRI60_RS02780 NONE
JRI60_RS02775  636608 ..  636629 -  -5.7  -3.32647   CTCCAAGGACATGAA           GCGGCTGGC CAAG GCGAGCCTC            GTGTGGGGCGACGAG  51 108
JRI60_RS02755  631498 ..  631516 - -10.2  -3.53811   TGGACGTCCTCGAAA             CCCCCGAG GTC CCCGGGGA             CGGCGGCGGGAAGTA  64 425
JRI60_RS02740 NONE
JRI60_RS02735  626723 ..  626746 -  -6.6  -2.78384   CGTCCGGCCACGACA          TCGCGGAGGC GTTC GCCCCCATGA           TGAGCAGCATCGGAG  47 128
JRI60_RS02730  626288 ..  626303 -  -4.6  -4.91109   CTCGCAGCAGAAAAA              CGCGTT CGTC ACCGCG               CTCGTCGAGAAAGCG  85 90
JRI60_RS02720  624805 ..  624817 -  -4.7  -3.05384   GCCTCTCGTACCGAA                CCCTC CGC GCGGG                GTCTTGTGAGAATGC  45 68
JRI60_RS02715  623654 ..  623667 -  -4.5  -3.76492   GTCAAGTTCATCAAA               CCCAC GCCC ATGGG                AGTGCCGCTCACGCT  58 197
JRI60_RS02705  622498 ..  622512 -  -2.7  -3.53444   CCACGGCCGCTGAAA               GAGCC GAGGG GGCAC               ACCCGGGAGCCGCTG  49 45
JRI60_RS02690  619367 ..  619397 - -16.8  -2.72511   GGGAGTGGTGGAAAC       GGCAGCGGGGCGGA AGT TCCGCCCCGCTGGT       TCGGGCGGGGCAATC  80 440
JRI60_RS02685 NONE
JRI60_RS02680  617269 ..  617297 -   -11  -3.35679   GGCCCGGACGTACAA        GGTGCCCAAGGA GAACA TCCTCGGCCACC        GTGACGTGGCTCCGG  64 116
JRI60_RS02670  615830 ..  615842 -  -3.3  -3.28712   GCCCGGGTCTGACAA                CGGCA AGT TCCCG                GGCTGGAGGCCTCCC  46 50
         dgt  614175 ..  614220 -   -11  -3.01712   CTGGCGCCGCCAATA CGTTGTCCCTCGCGCCCGAC GTGCGT GTCCTGCGCGAGGGGCAGCA GGTGTCGCTGCGGAG  60 189
JRI60_RS02650 NONE
JRI60_RS02645  610333 ..  610353 -  -8.1   -3.6968   CGACAAGGTGAAGAA            CGTGCGCTC CCA GGGCGCTCG            CGCCGTCATCATCGG  61 503
JRI60_RS02625  605730 ..  605757 -  -2.1  -2.72344   GTGGATCTGCAAGCA       GATCGTCGACTCGC TCG GCG-G-CGAC-ATC       CGCGTCGAGAGTCTT  39 152
JRI60_RS02615 NONE
JRI60_RS02610 NONE
JRI60_RS02600 NONE
JRI60_RS02500  575474 ..  575494 -  -4.5  -3.28712   GGCGGCGTGCGAGAA            GCTGCGCGC GCG GCACGAGGC            GCACATCCAGGTGTA  49 474
JRI60_RS02490  572596 ..  572618 - -15.6   -3.6947   ACAACCCCAACACAA           CCCCTCTCCC TCT GGGAGAGGGA           CGGGGTGAGGGTATA  85 87
JRI60_RS02480  570540 ..  570570 -   -11  -4.13945   ACCCCCACTCCAAAA       CCACTCCCTCTCCC CCT GGGAGAGGGTCGGG       GTGAGGGTATACAGC  81 85
JRI60_RS02470  569303 ..  569324 - -11.6  -4.65895   GGCCCGAGCGAAAAA           CGGGAGAC GTCGGT GTCTCCCG            AGCATGCCTGACAGC 100 45
JRI60_RS02455  563923 ..  563964 -  -8.6  -2.91681   GGGGAACTCCATATA GGTGTCCC-CCGCCCTCCA TGCGT CGGAGGGCGGCGGGAGGCG CCTTGCGCGTCGGGC  54 48
JRI60_RS02450  562172 ..  562182 -  -2.4  -3.15579   GGAAGCGCTGAGGAA                 GGGG AGT CCGC                 GAGGTTGACAGTTGG  42 481
JRI60_RS02435  558590 ..  558617 -  -6.2  -2.71263   AAGGTGGTGGAAGGA        GGCCAGAGGC TACTCCAG GCCGCTGACC         CCTTTCGGTGCCGCA  47 59
JRI60_RS02430  557326 ..  557365 -  -2.7  -2.83271   CGAGCTGGAGAAGCA  GGGGCGCTACCTGGCCGA CGTGT TCGGCG-GGTAGTGGCCG  GCGCTTCACTGGCGC  41 31
JRI60_RS02415  551681 ..  551694 -  -5.9  -3.47078   GACGCCAGAGGAGAA               CAGGG AGGA CCCCG                AGATGGATCCGCGAA  55 500
JRI60_RS02390  546996 ..  547016 -  -4.7  -2.53015   AGAGCGCGGAACGTA           CGGCACTG CGCCTC CAG-GCCG            TCCTGCGTTTCTGGG  41 430
JRI60_RS02360  541321 ..  541336 -    -6  -3.05596   GACGGTGGCAGTGAA              GCGCCC GGAC GGGCGA               GTGGAGCAGGTGCGA  47 494
         tkt  538138 ..  538148 -  -4.6  -3.08679   CGCGCGGAGCGAACA                 CGCG CCG CGCA                 AGCTCAACGCCCTCT  47 88
JRI60_RS02335 NONE
JRI60_RS02330  535252 ..  535270 -  -8.1  -2.90075   CCTTCTCCAATGAGA             CGGTCCC TTCAT GAGACCG             GGGTGCATCCTGTGT  52 90
JRI60_RS02325  533773 ..  533788 - -10.4  -3.28712   CCCGGCCCTGGAGAA              GCGCTG GGGC CAGCGC               GCGGAGACCCTGCCG  64 342
JRI60_RS02310  531661 ..  531674 -  -4.5  -2.62184   CCCGGGTGGAGACGA               CGG-GC ACG GCGCCG               TCGCTGGAGTCCGAG  41 424
JRI60_RS02295  528653 ..  528666 -  -9.5  -3.61398   CCTGGCCGCCAAGAA               GCCCG AGAG CGGGC                TGCTGCCCACCGACG  67 473
JRI60_RS02285 NONE
JRI60_RS02280  523911 ..  523954 - -17.5  -3.14132   CCCGGGGGCCACGAA TG-CGAACGCCCCCTCCCCG GAACG CGGGGAAGGGGCGTCTGTCA CACCACTCGGCGGCC  84 75
JRI60_RS02275  522403 ..  522432 - -12.9  -3.05384   CGGCGTGCCATGGAA       GCTCCGGGTGG AAGAAAGG CCACCCGGAAC        CTTGTCAGACAGTGG  70 64
JRI60_RS02270  521313 ..  521348 -    -3  -3.36273   CCTCCTGAAGACCAA    CGGTCATGATGCCCCC GTCC GGCGGCAACGTGGCCC     GGGAGTCCGGCAGGA  48 80
JRI60_RS02265  520631 ..  520647 -  -4.3   -2.8294   GACGCGCGAGAACGA              GGACCCG GGG CGCATCC              GGTTCGACGCGCTCT  42 481
JRI60_RS02255  519192 ..  519213 -  -4.3  -3.14564   TCAGGGGCTCATCAA           GCCCCGG AGATGAAG CCGGGGT            CGGGCGGGTCCTTGC  47 0
JRI60_RS02235  515606 ..  515623 - -10.5  -2.57344   GATCGCTTCGACAAG             GAGGCCC ACGA GGGCCCC              ATGGAGTCCCCCATC  56 123
JRI60_RS02225  513313 ..  513357 -  -3.4  -3.46602   GCGGCCAGAGGATAA CGTTCCCGAGGCCGCACGGCAG GTC CT-CCGCGAGGCGG-GGGAGCG CATCCTGTCACTTGG  48 33
        dusA  511887 ..  511905 -  -3.1  -3.30124   GGCCACGGGCCAGAA            GCTGGGCGC GCT GCGCC--GC            AAGGGCCTCAAGTCC  47 350
JRI60_RS02205  509588 ..  509600 - -10.5  -2.70932   CGCGCGGCCGAAGCA                GGCCG TGA CGGCC                AGGTAGCGCGGGATG  57 428
JRI60_RS02200  509064 ..  509083 -  -4.2  -3.61398   CGCGGTGGGCAAGAA            CGGCCGCAC GCT GTTCG-CCG            GTGGCTTCCTGGTGG  55 242
JRI60_RS02190  504954 ..  504974 -  -9.7  -3.14132   CGCGTTTCGGACGAA            CTGGTCTGA CAG TCGGACCAG            TTGCTCCCGAGCGCG  59 80
JRI60_RS02160  498567 ..  498585 -  -2.4  -3.40403   CCGCCGTCACGAGAA            GGCTCCG GCCGTG CGGA-CC             TTCCTGGAGGTGGTC  45 64
JRI60_RS02150 NONE
JRI60_RS02145  495352 ..  495374 - -15.6  -4.00445   CACCACCAACAACAA           CCCCTCTCCC TCC GGGAGAGGGA           CGGGGTGAGGGTACC  91 288
JRI60_RS02140  494432 ..  494451 -  -4.9  -3.01712   CCTGGGCCTGTAACA            CGCTGGC GCGGGG GCGAGCG             GGTGGCTCGTTCGGG  45 278
JRI60_RS02115  489242 ..  489277 -  -6.6  -2.62616   CGACGGCGGAGACGA    CGAGGCGCCTTCCCCC TTCT GGGAGGACCCGCCGCG     CTCCGGTGGCCGCTG  46 52
JRI60_RS02105  487943 ..  487967 -    -5  -3.03124   GCGGAGGGTGGAACA         CGGGG-GAG CACGTACC CTCACCCCG          ACCCTCTCCCGGAGG  45 68
        mtnA NONE
JRI60_RS02095 NONE
JRI60_RS02090  485486 ..  485506 -  -6.7  -2.79023   GAACGCGATGAAGTA            CGGAGCGGG GCA CCCGGTGCG            GGTGAGGGTGGAGGG  46 378
JRI60_RS02080  483298 ..  483308 -  -2.4  -3.14881   CAATGCGTCCAGCAA                 GGCC GTC GCCC                 CTCCCAGTCGTGGTG  42 130
JRI60_RS02075 NONE
JRI60_RS02070  480789 ..  480813 -  -2.1  -2.78547   CGAGGGCATGAAGGA          GATGCCCTA CCTGCAC CAGGTCATC          CACGAGGCGCTGCGC  39 432
JRI60_RS02060  478327 ..  478349 - -15.6  -3.72027   ATCTCGTAGCAAGAA           CCCCTCTCCC TTC GGGAGAGGGA           CGGGGTGAGGGTACC  85 86
JRI60_RS02035  474236 ..  474246 -  -2.4  -3.79906   CGACCTGGAGAACAA                 CCCG ACG CGCG                 CCGCCGACCCGGACG  55 303
JRI60_RS02020  468600 ..  468634 -    -7  -3.40597   GCCGCGATGCAAACA     GGGGCGAGGAACACGA GGG TGACGACCCTCACCCC     CCGCCCTCTCCCAGA  56 102
JRI60_RS02010  466969 ..  466995 -  -2.9  -3.04792   GTATCACCGTGAAGA        GCTCCTC-CCGC ATGC GCAGCAAGGTGC         TCCCTCGCGCCACCG  41 231
JRI60_RS01945 NONE
JRI60_RS01940 NONE
JRI60_RS01935  451621 ..  451648 -  -6.9  -3.44051   CCGTGAGGACGAGAA        GCGGTAGGGCC TCCCGG GGTCCTACCCC         TTCAACAGGTTCTTC  56 19
JRI60_RS01905 NONE
JRI60_RS01900  446326 ..  446364 -  -7.3  -2.62263   ACCTGGGGGAGATCA  TCGACGACGAGCTGTGGG CGTC CCCACGGC-CGTCGACAT   GGAACCTGTGGGCCG  48 505
JRI60_RS01885  443616 ..  443641 - -11.1  -4.73388   AATCCCCAGGAAAAA         GGGCTG-CTGGC GCG GCCCGTCAGCCC         TTGCGCCACACCTCG 100 19
JRI60_RS01880 NONE
JRI60_RS01875 NONE
JRI60_RS01870  440541 ..  440555 -  -7.8  -3.10715   CCGAGCACCACGCAA               CGTCAC ACG GCGACG               CATCCCATCAGGGTC  54 110
JRI60_RS01865  440219 ..  440247 - -13.1  -3.53012   GCCCGCCTGTTCAAA        TCACCCCTCTCCC GCT GGGAGAGGGACGG        GGTGAGGGTATGGGG  77 90
JRI60_RS01860 NONE
JRI60_RS01855 NONE
        nrfD  434362 ..  434377 -  -3.2  -3.57144   GTGTCCAGCTCCAAA              TGGACC CCGA GCTCCA               AGGCGATTCGCTGGT  50 465
JRI60_RS01825  426022 ..  426033 -  -3.6  -2.71497   CCACCTCAAATCAAC                CGCC GGGA GACG                 TCATGCATCGGCGCT  41 26
JRI60_RS01820 NONE
JRI60_RS01815  420329 ..  420339 -  -2.4  -3.13522   ACGGGCTGAGCAAGA                 CGGC GGC GCTG                 GAGTTCGCGAAGGAG  41 360
JRI60_RS01805  417415 ..  417433 -  -2.3  -2.52464   CTTCGGGGGAATGGA             GACGACC CAGGC GGTGGCC             GCATTCGAGACCGGT  38 311
JRI60_RS01790 NONE
JRI60_RS01785  414516 ..  414540 -    -7  -2.64243   TGAGACTCGACACGA          TGGCGGGGGA GACGT TCCTCCGCCT          GGATGGGGCGGCGCG  45 502
JRI60_RS01775  412861 ..  412910 - -15.5  -2.57564   GGAGGCGGGGACAAG GCTACCCCCGGAAGACCCTCGCG CGCA CGGGGGGGTCCTCCGGGGGGTGG GGCGTGCGTCAGTCG  74 34
JRI60_RS01770  411514 ..  411532 -  -4.4  -3.62046   CGAGGCCTGGAAGAA             GCTCGAGG CCG CCTCGCCC             CTGGGCCGCATGGGC  55 246
JRI60_RS01740 NONE
        mobB NONE
        fdhD  400466 ..  400484 -  -6.6  -4.08216   CGATGCTTCTCAAAA             GCCAGGCC GAC AGCATGGC             GGAGTTCCTCAAGCT  67 481
JRI60_RS01700  393738 ..  393759 -  -5.8  -3.07816   TGTTCAGGGACTCAA           CCCGCC TCGGCCTGCT GGCGGG            TCACCCCGAAGCGAT  47 0
JRI60_RS01695 NONE
JRI60_RS01690  391730 ..  391754 -  -3.6  -3.31144   TGGTCATTTGGAGAA         CCCCCACA-TG AATT CAGTATAGGGG          GCATTCCATGAAAGG  47 86
        glgC  390401 ..  390436 -  -8.8  -3.53224   CACGGCGTCCTGAAA    GGCCCGCGGGCGGGCAG ACA CCCCACTCCCGCGG-CC    AGGAACATCCTCTTC  62 57
JRI60_RS01680  390075 ..  390085 -  -2.4  -3.93817   GACAGCTCAAAAACA                 CGAC AGG GACG                 GATGCAACGTGAAGA  56 6
JRI60_RS01675 NONE
JRI60_RS01670  386399 ..  386431 -  -4.7  -2.98823   CGGCTGCGAGACAGA      CAGCTCGCGCCGC ACCACCA GCGGGGTGACCTG      CTGTGCTTCACCCTC  44 465
JRI60_RS01650  383449 ..  383493 -  -2.5  -2.97747   GGGGTAGAGGACATA TGCCCGCCGGCCGTGGAGGTG TGT CCCTTCCCCGACGTGCAGCCA ATCCCTACCGGGCCC  41 30
JRI60_RS01645 NONE
JRI60_RS01640  381534 ..  381581 - -10.3  -2.73681   CAGGTACTCCAATCA GCCGGGCCGCGCCACCCCCCT CCCTAT ACGGTGGCGGCCCGCCCCGCC TCGTAGACGGGGGCC  57 1
JRI60_RS01635  380088 ..  380103 -  -4.6  -3.31144   GCCGCACCTCTACAA              CACGGC GGCG GACGTG               GACCGGCTGTTGGAG  49 45
JRI60_RS01605  371491 ..  371525 -  -4.9  -3.81146   CCGGCGAACCAACAA    GGCAGCCATCCGCTGGC CAG GCCAGGGG-CGGC-GCT    ATCCGGTGGAGGCCA  58 24
JRI60_RS01600  370835 ..  370849 -  -7.1  -3.15544   CGCGACGGTGAGGAA               GGAGC GCATG GCTCC               TTTCATAACGGCCCT  52 69
JRI60_RS01595  369977 ..  369987 -  -2.4  -2.62616   GCACGCGGGAGAGGA                 CGTG GTG CGCG                 CCGAGCCCTTCGACG  38 102
JRI60_RS01580  366702 ..  366725 -    -3  -2.88861   CAGGACCCGGAGAGA          CTCTCGCCGCC CCG GGCC-CGGGAG          TATCACGCACTACTT  41 35
JRI60_RS01575  366155 ..  366175 - -14.1  -3.14132   CGCGCTCTTCACGAA            CTGGTCTGA CAG TCAGACCAG            TTGCTCGCGAGCGCG  73 61
JRI60_RS01570  364901 ..  364913 -  -3.3  -3.66139   CACACAGAGTCGAAA                CAGGC GCG GGCTG                GCGTACTCGCCCGGC  53 150
JRI60_RS01565  363642 ..  363670 -  -5.9  -2.60075   TCGCCCGGAACGAAC        TGTGAGCTCGTGG TTT CCATGAACCCACT        CTAACGGCTGCGTCT  46 26
JRI60_RS01560 NONE
JRI60_RS01555  362836 ..  362847 -  -2.2  -2.73067   GTCAACCAGACATCA                GCAG TGGT CTAC                 TTTGATAGGAAGTAT  38 22
JRI60_RS01550 NONE
JRI60_RS01545 NONE
JRI60_RS01540  360727 ..  360742 -  -6.1  -3.14344   CACCGTGGTGATGAA              GACGG ATGGCA CCGTC               TGGACCTGGGGCTTC  51 139
JRI60_RS01525 NONE
JRI60_RS01490  349909 ..  349943 - -12.8  -3.05384   GCCCCGGTGACTCAA     CTCCCCCTCTCCCTCT GGG AGAGGGACGGGGTGAG     GGTATAAGTGTCCGT  67 73
JRI60_RS01480  347565 ..  347587 -  -9.9  -3.14132   GCTGCTCGTGAGCAA          CG-GGCGCAT CCAC ATGCGCCTCG           TCGAGGCCATGGAGC  59 72
JRI60_RS01465  345431 ..  345469 -  -6.4  -3.05384   CGCCTTCCGAGTCAA   GGCATTCGCCGGGCACGG GGC CCGCTCACGGCGTGTGCG   TCTGGGCCCAGTAGG  49 12
JRI60_RS01460 NONE
        cglB NONE
JRI60_RS01450  340474 ..  340498 -  -8.6  -2.81547   CGTGGACATCAACCA         GCCCG-G-CGCT CAG AGCGACACGGGC         GTCTACCAGGATGGG  51 426
JRI60_RS01435  337520 ..  337569 -  -7.7  -3.16564   CGGTGATGGCACGAA CCTGACGTGAGGGAGGCC-GGTTG ACA CACCCTGGCTTCCCTCCCCTCCAG CGAACCTGGCGCTCA  54 38
JRI60_RS01420  334738 ..  334752 -  -7.1  -3.10164   TCACGGACCATGGAA               TCGGC ATCGA GCCGA               GCCAGCGTGCCCGGA  49 213
JRI60_RS01400  326281 ..  326309 -  -2.3  -3.15544   CCTCATCCTCATCAA       CCCGCTGCTCAC CTTCGT GTG-GCTGCGGT        TCGACATCGAGACCG  44 250
JRI60_RS01380  323469 ..  323487 - -10.3  -3.22298   GGCATCGATGAGGAA             GTCCTCC AGGCG GGAGGAC             GGCACGGACACTGGG  62 237
JRI60_RS01370 NONE
JRI60_RS01365 NONE
JRI60_RS01360  312478 ..  312499 -  -5.1  -2.79183   GCGAGGCGGATCACA           GCCTTCGTGG ATG CCAGG-AGGC           GCGTGGATGCGGGCT  45 39
JRI60_RS01355  310858 ..  310894 -  -5.8  -3.57039   GACCGACAAGCACAA   GACGCTGATGATCCTGG TCAA CCTGG-TCAGCAACGCC    AAGTACGCCCTGGAC  53 376
JRI60_RS01345  307268 ..  307302 -  -2.6  -2.71268   CTTGACGATACAGGA     GGTTCAGGCGGGACGT GAG ACGCCCCCACCGATGC     GACGAGCGGAGACCT  38 71
JRI60_RS01340 NONE
JRI60_RS01335  300049 ..  300069 -  -8.2  -3.14132   GTTCGGCGGGACGAA            GTGGCGCG TGGTG CTCGCCAC            GGGGCACGCGGTGAA  56 419
JRI60_RS01325 NONE
JRI60_RS01320 NONE
JRI60_RS01315  296890 ..  296910 -  -9.7  -3.14132   CGCGCTCGGGAGCAA            CTGGTCTGA CAG TCGGACCAG            TTCGTCCGAAGTGCG  59 113
JRI60_RS01290  290181 ..  290204 -    -6  -3.33815   AGGCTGCGGAAGGAA          CAGCGCGCGAA GGG CTCACG-GCTG          CCCGATGAACTTGTC  53 17
JRI60_RS01285  289419 ..  289445 - -10.8  -3.79787   CCAGAGGAACCCAAA         GCCCCCTCTCCC TCC GGGAGAGGGAAA         GGGTGAGGGTAGCCG  77 118
JRI60_RS01265  284830 ..  284884 -  -7.8   -3.2963   ATCATCGGTGGAGAA GCCGGGCCTCGCCGGACCCGCGTGGT TCTCG ACCACG-GGGTCGGGTCAGGGC-AGC TCCTCCAAGTAGCCT  56 39
JRI60_RS01255  283205 ..  283219 -  -2.1  -3.21099   CCTCTGCACGACCAA              CAC-CG TCTC CGCGTG               GTTCCTCTATCCGTA  42 126
JRI60_RS01245  279101 ..  279121 -  -4.5  -3.05463   AGCGGGCTTACTCAA            CCCCTCCGG ATT CCGGCGCAG            CTCATCCGGGACGTC  45 277
JRI60_RS01210 NONE
JRI60_RS01205  271544 ..  271558 -  -4.9  -3.14132   GCCTTGGTGCAGGAA               GGCCC GGAGG GAGCC               GAGCATCTGGTGGTG  47 376
JRI60_RS01185  267917 ..  267934 -  -9.1  -4.07568   GGCGCCGGGCGAAAA             GCGTGCG CTTC CGCACAC              TGCGGCGTGCAGTCG  75 74
JRI60_RS01180 NONE
JRI60_RS01175  266580 ..  266593 -  -2.3  -3.53811   GCGACTTCTGGGAAA               CTGGG ACCT CTCAG                ACGGCGGTGTAACCG  48 22
JRI60_RS01170 NONE
JRI60_RS01165  262494 ..  262517 - -10.2  -2.50816   CCCGGAGGGAGGAAT          CCCACCCCGG CGGA CCAGCGTGGG           CGTCAGCTTCCCTGG  56 28
JRI60_RS01160 NONE
JRI60_RS01155 NONE
JRI60_RS01150 NONE
JRI60_RS01145  256481 ..  256526 -  -5.4  -3.61398   TGGTGCCTTCAACAA CGCCGGCA--TCCCCG-GCCCGC TCG GCAAGCTCGCGGACCTCCCGGCG GCCGAGTACCGCCAG  57 482
JRI60_RS01110  249062 ..  249078 -  -9.4  -2.86164   GGGGGAAGGAGGACA              GAGGCG GCACA CGCCTC              CCCCGTGAGCGCGCC  56 67
JRI60_RS01105  245877 ..  245905 -  -5.1  -2.63596   GCCCATCGTAGAGGA        GGACCCCAGAGCT GTC AGCCCGGAGAGCC        CGGAAAGAGGCGAGT  44 49
JRI60_RS01100  244424 ..  244436 -  -4.7  -2.84051   CCATTCCCAGCAAAT                GCCTG GGT CTGGC                GCACTGTCGCTCCCT  44 40
JRI60_RS01080  238488 ..  238499 -  -7.2  -3.16191   GGACACCTTCACCAA                CGCG GTGG CGCG                 TCCGGCGAAGGTGAC  54 256
JRI60_RS01065  232128 ..  232141 -  -9.5  -2.71731   CCGAGCGTGGAAGGA               CCCGG AGTA CCGGG                CGAGACTGTCGGCCG  54 333
JRI60_RS01055 NONE
JRI60_RS01050  228827 ..  228839 -  -3.3  -4.77759   AGAACGCACGAAAAA                GTGGG GGA CTCAC                CAGAAGGTAAGGGCG  75 408
JRI60_RS01040  227544 ..  227565 -  -3.6  -3.35813   GGTGAGGCGAAGCAA           CGCGTAGC GTGGTG GCTCCACG            GACACCGTGGTTCGC  49 147
JRI60_RS01025  226138 ..  226160 -  -2.6  -2.90496   GGTGCGTCGAAATCA          CGCC-GGCC GATCGA GGCCAGGCC           CCTCCCCACCACGGG  40 107
JRI60_RS01020  222328 ..  222339 -  -5.8  -3.14344   TACGGGGGCGAGGAA                GAGG CCTT CCTC                 TTCGCGCTGGGCCGT  49 413
JRI60_RS00995 NONE
JRI60_RS00990 NONE
JRI60_RS00985  213465 ..  213486 -  -5.8  -3.61398   GGCGGGCTGGAACAA           GGTGCAGC TGAGCC GCTGGACC            ACGGCGGGCTATTAC  57 116
JRI60_RS00975 NONE
JRI60_RS00965  207995 ..  208029 -  -6.2  -3.28712   CGTCCCCTCCCAGAA     CAGGTGCGGGAGGGGT GTT ACCCCAAGCACCCCTG     GCCGGATGAGCCGCT  53 47
JRI60_RS00960 NONE
JRI60_RS00955  206614 ..  206632 -  -8.1  -3.03338   AGAAGCTCCGCAAGA            CGGCC-CG GTTA CGTGGCCG             GCTGTGTCACCGCTC  53 32
JRI60_RS00940  204909 ..  204940 -   -10  -2.95388   GACTGAAGGGAGAGA      GGGGGCCTGCTGCG TCAG CGCAGCACGCGGCC       GGGAAGGCTCAGGTC  60 8
JRI60_RS00935  204122 ..  204160 - -12.3  -2.74012   GCAGCACGGCAACCA  GCGCCGCGAGGG-GGGGC CACG GCCGAGCCCTCGCGGGGC   ACCTTCGTGTCCGCC  65 131
JRI60_RS00930 NONE
JRI60_RS00925  202679 ..  202710 -  -5.1  -2.72144   CCACTTCTCCGAAAT     CCAGACGCGGCTAGC GCGC GCT-GCC-CGCCGGG      GCCCCGAGGCGCTGC  45 4
JRI60_RS00915  200904 ..  200935 -  -9.4  -3.28712   CCGCGTGGTGCACAA      CCTCGACCCGGAG GCGGACA CGCCGGG-CGAGG      GATGAAGCGTCGAGC  61 40
JRI60_RS00910  199809 ..  199821 -  -6.9  -2.87132   CGCGGCCCGGAGAGA                GCACG GCG CGCGC                ACGCAAGCTGTTCCG  48 43
JRI60_RS00900 NONE
JRI60_RS00895  197054 ..  197070 - -12.3  -2.62184   TGCGCCTGGAGATGA              TGCGGCT CAC AGCCGCA              CGAGCAGCCTACCGT  64 34
JRI60_RS00875  192125 ..  192139 -  -5.6  -2.92613   TCCGAGGGCAAAGGA               GTCTCG CAA CGAGCC               CTATGCCCGAACGGA  46 49
JRI60_RS00870  190110 ..  190122 -  -5.5  -4.07568   CCCTCGGCGCGAAAA                CGGAG GCA CTCCA                GCGGTTCGGAGACGT  65 452
JRI60_RS00840 NONE
JRI60_RS00835  182256 ..  182276 - -12.5  -2.52896   TGAGCCTGTAATGGA            GGCTGCTGG AAC CCGGCAGCC            GCACCCGCAGTCACG  63 360
JRI60_RS00815 NONE
JRI60_RS00810  176354 ..  176392 - -12.4  -2.62184   CGTGCGGGCACAGCA   CCGCATACTTGGCCTGAG CGC CTCAAGCGCAGTCTGCGG   CCATTGGGGCATGCC  64 407
JRI60_RS00795 NONE
JRI60_RS00790  173061 ..  173104 -  -2.5  -3.22858   TGAACGACATGAATA GCCTGAAG-TCGTCGGC-GCAC TTG ATGCAGCCGAAGAACTTC-GTC TTTCCGTTTCTCGCG  44 390
JRI60_RS00770  169187 ..  169211 -  -4.2  -3.09015   CCCACATCCACCCAA          CGGAAACGCG CCGGC CGCCCTTCCA          CCTCCACCGAGGCCT  45 461
JRI60_RS00760  166308 ..  166338 -  -2.5  -3.25823   CCCCGGGCAGATCAA      CGCCTGGGACAACG AGGA CTTCGTCA-AGGCG       GTGAAGGCCACCGGC  44 447
JRI60_RS00745  161826 ..  161840 -  -5.6  -3.13522   ACCCTGGCACGAACA               CCTGGA CGA TCCTGG               GCGGCCTGAGGACGA  47 511
JRI60_RS00730  158588 ..  158612 -    -7  -3.15544   GCGCACGTTGACCAA          CGTCACCGGC CAGAT GCTGGTGCCG          GTCCTGGTGGCCAGG  51 109
        zigA  155567 ..  155579 -  -4.7  -3.47227   CGTCAACGAGCAGAA                CCCCG GTG CGCGG                GCCTTCTACGCCCGT  51 214
JRI60_RS00695  147341 ..  147362 -  -3.6  -3.14132   GGCCGCCTGCACCAA           CTGCACGA CGGACT TCGCGCGG            TTCCCCGCGTACCTG  45 350
JRI60_RS00685  144917 ..  144939 -  -7.6  -2.98823   CCGGCTCCACAGAGA           GGAGGCGCAG GCT CTCCGCGTCC           GCCTTCCAGCAAATG  53 249
JRI60_RS00680 NONE
JRI60_RS00675  141908 ..  141924 -  -9.3  -3.61398   TGCCCTGGTGAAGAA              GGCCGCC CCC GGCGCCC              GCGAGTCCATGAAGT  67 369
JRI60_RS00665 NONE
JRI60_RS00655 NONE
JRI60_RS00650 NONE
JRI60_RS00645  137162 ..  137172 -  -8.2  -2.62616   TGAGGCCCGACAGCA                 GGCC AAT GGCC                 GCGAACTCCGAGGCC  52 271
JRI60_RS00630  132917 ..  132930 -  -2.3    -3.889   TTCAAGGACATCAAA               GATCC GGGA GGAAC                GACCACGGGGCTCGC  54 268
JRI60_RS00615  127676 ..  127719 -  -8.1  -3.53012   GCTCTCCGCGCCAAA CCGGCGC-TCGCGGCACGT-GC GCG GCGACA-GCCGCGTCGCGGCGG AAGCCGTTGACGCAC  60 58
JRI60_RS00605  123664 ..  123674 -  -2.4   -3.0263   ACGAGTCGTCTAACA                 CCTG AGG CCGG                 AGGCCAGTTCCTCAC  41 37
JRI60_RS00600  122812 ..  122855 -  -9.7  -3.01712   CCGCGGGTCGGAAGA TCGGACGACCACCACCGTC GAGCAGGT GACGG-GGCGGCC-TCCGA GGGAGCTCGCGGACT  57 158
JRI60_RS00585  120778 ..  120810 -  -3.4  -3.34398   GCGGGTGTGGAAATA      CCCTCACCCT AGCCCTCTCCCAG AGGGAGAGGG      GACATCCACGGGCCC  46 75
JRI60_RS00580 NONE
JRI60_RS00575 NONE
JRI60_RS00570 NONE
JRI60_RS00565 NONE
JRI60_RS00560  113589 ..  113604 -  -6.1  -2.70932   GCTGTCGGGCAAGTA              CACGC GCGAGG GCGTG               GGGGCGAAGGGGGAC  46 457
JRI60_RS00550  111710 ..  111739 -  -4.9  -2.90496   GTCGTCTCGAAATCA       CCCGGGGAAGCAGC AGC GC-ACTTCGCCTGG       CTCGCGCGCTTCTTC  44 186
JRI60_RS00540  109466 ..  109478 -  -4.7  -3.61398   CCGGCCCTGGAACAA                CGTGC TCT GCGCG                AGCCGCGACTATGTG  55 439
JRI60_RS00530  107875 ..  107897 -  -5.4  -3.14881   CAAGCTGTTGACGAA           GCGGGGACGC AAG GCATACGCGC           GACGCAAGGTGACGG  49 355
JRI60_RS00510  104657 ..  104680 -  -3.8  -3.02263   ACACCCTTCGCAAGA          CCCTGACG ACGGTAAA CGTGAGGG           GGCCAGGGACTCATC  44 199
JRI60_RS00505  103492 ..  103520 -  -9.4  -3.65224   ATGTGATCGGAACAA        GACCCCGGGCAC TGGTC GGGCCCGGGAGC        GTGGAGATCACGAAC  68 33
JRI60_RS00495  100347 ..  100369 -  -6.8  -3.35679   GCTCGCGACGGAGAA           CCGGGGGCAG CGG CCGTCCACGG           AGGTGCTGCAGCGCG  53 53
JRI60_RS00485   98064 ..   98113 -    -7  -5.00616   TCCCCGCGCAAAAAA GGGACCCGGCCGGCAAGGGCCCGC GCCT GGGGGTCATCGCC--CCGGGTTCC GAGGGGCATCGAGCA  87 9
JRI60_RS00480   94931 ..   94943 -  -4.7  -3.63515   GGGCACCGGCAAGAA                CCGGC TCG GGCGG                ATCCTCATGGAGGTT  55 73
JRI60_RS00465   93286 ..   93324 -  -2.9  -2.62184   GTGCCCGCGACAGTA  CCTCCCCAG-GCGCTCCG GAGT CAGAGCGTTCGGGGGTCG   TAGTCGTGGTCGGAC  39 7
JRI60_RS00460   92749 ..   92763 -  -4.2  -3.21099   TGCTTGGAGGACGAA               CCATAC GCG GTGTGG               TGTGGCATTGCCTAG  45 37
JRI60_RS00455   92135 ..   92153 -  -2.2  -3.67597   CCCCGGACCCAACAA             CACCCTGC GAA GCGGGAAG             ACGTCAGGGTTTCCC  51 332
JRI60_RS00445   90673 ..   90693 -  -3.9   -3.0568   CAATGTAAATGAAAC            GTGGACGTT TTC ATCTTCCAC            CCTCCCAACAGGGGA  44 160
JRI60_RS00440   89561 ..   89597 -  -2.1  -3.66018   TCAGGATGGCAACAA    CCCGCGCGGGATGAT GGTGCAG ATGCTCCAGAGCGGG    CACTGGCATTCGGCG  51 473
JRI60_RS00430 NONE
JRI60_RS00425   87508 ..   87520 -  -3.3  -3.55071   GGAGACGGTGTCAAA                GAGAC CGA GCCCC                GAGCCACTCACTGCC  49 33
JRI60_RS00420   86377 ..   86429 -  -5.3  -4.25104   CCCCGCCGATGAAAA GGTGGCGGGGACGC-CGAGCCGAG GTAGCG CGCGGCTCCTACGCCGCCGTCTCC AGGCGGGTGACGTAG  69 10
JRI60_RS00400   79863 ..   79882 -  -5.6  -3.39018   GGAGCACGGCAAAGA            CATCTGCC AGCG GGCGGACG             TACGCATGACCATGA  53 192
JRI60_RS00395 NONE
JRI60_RS00390   76780 ..   76793 -  -3.8  -3.56643   GGGAGATTGCTCAAA               CGCA ATTGAA TGCG                TTGGGGGAGTAGACG  51 72
JRI60_RS00380   74760 ..   74786 -  -9.4  -2.58663   ATCGACCTCGACAAG        CGCGGCG-GCA TCTGGG CGCACGCCGCG         TCGACGCTGTGGCGC  54 114
JRI60_RS00375   74144 ..   74168 - -11.3  -2.89793   CGACGGAGAGAACGA          GCCCCGGGGAG GAT CTTCCCGGGGG          ATTTTCCGGAGCAAT  61 57
JRI60_RS00370 NONE
JRI60_RS00365   72000 ..   72042 - -15.4  -4.57073   CAGCCTTCGGAAAAA GAACCGCCCCGCGCCCGG TGTGGAG CCGGGGGCAGGGCGGGGC TCACCGCGAGCGCGG 100 52
JRI60_RS00360   70982 ..   71007 -  -6.7  -3.25823   GGTGCGGCAGACGAA         CGGCGCGTACG TCAA CGTGGGCACCG          ACAGCATCACCAATG  51 437
JRI60_RS00345 NONE
JRI60_RS00340   65726 ..   65753 -  -8.4  -2.70143   ACGTCAACGACACCA        TCCACCTGCCCA CGGC CGAGGAGGTGGA         GCGGGGCCTGCGAAT  51 473
JRI60_RS00320   62185 ..   62206 -  -2.9  -2.57931   GGGACGTGCGAGAAC           TGGCACTCC CCCG GAAGCGTCA            AGTGGGGATACGCGC  38 377
JRI60_RS00285   56743 ..   56756 -  -3.7  -3.90112   GCCTTGCCAAGGAAA               GCGCC CCAG GGCTC                CTTGGAGTCCGGCTT  59 262
JRI60_RS00280 NONE
JRI60_RS00275   55138 ..   55149 -  -3.6  -3.61715   CATCTGGGGGAAGAA                GACC GGGC GGCC                 CGCGATCGACGCCTA  53 133
JRI60_RS00265 NONE
JRI60_RS00260   51572 ..   51589 -  -8.3  -3.03007   AACAGCGCTTCAACA             TGGGGGC GGTT GCCCCCG              CGGGCTATCAGGCGA  54 511
JRI60_RS00160   31799 ..   31812 -  -3.7  -2.53581   CAGATGGCGAAGGGA               GTGGG AGGG CCCGC                GGCTCAGTGGAGCTG  40 29
JRI60_RS00155 NONE
JRI60_RS00150   29122 ..   29132 -  -2.4  -3.63515   GCTCATCGGCAACAA                 CCTG GGC CGGG                 TGAATGGCTGGGTGA  51 101
JRI60_RS00140 NONE
JRI60_RS00135   25942 ..   25971 - -12.8  -3.28712   CGGCTCCGTTGAGAA       GCCGTGCACGCG AGGGCG CGCGCTCACGGC        CAGCGCTTGACGGCT  71 19
JRI60_RS00130   24697 ..   24707 -  -3.2  -2.80016   CTCGACGAGGAAGTA                 GAGC TTC ACTC                 CATCCCCTCCTCGAA  40 20
JRI60_RS00125   23759 ..   23775 -  -3.6  -3.28924   GACGGCGGCGGAGAA              CGTCGC GGCGG GCTACG              CGACCCCGAGCGCGG  47 233
JRI60_RS00085   17357 ..   17381 -  -4.9  -3.92602   CGAAGAGGCCAGAAA          CACCAGAGC CACCAGC GCTCAGGCG          GGAGCGACCCACTGG  61 19
JRI60_RS00080 NONE
JRI60_RS00075   14942 ..   14969 -  -2.4   -3.1247   ACCCTCGAGAGGGAA        CCCGAGCCCACG TGGA CGGTGGCGCGCG         CCTTCGCCCGGTGTG  41 493
         ggt   12772 ..   12817 - -10.9  -2.87132   GCCGCCCGTGAGACA GCGCACGTCCCGGAC-GGGGGC GGC GCCCGGTGGACGGGACGGGCGC GTGCCCTCGCGTTGG  61 82
        egtB NONE
        egtD   10168 ..   10202 -  -4.9  -2.87931   TCCAGCTTCGAGACA    GCGTGCCC--CGGATTC GAG GACCCCGCCGGGCGCGC    GCGGCGCGAACTGGT  44 170
JRI60_RS00050    8900 ..    8952 -   -20  -3.01712   CCGGGGCCCGCAAGA CATCGGGCGCCACACTCCGAGGG CCCGTCTT CCCCCGGACTGCG-CGCCCGATG AATCCCCCCTTCGGA 100 366
JRI60_RS00025    4817 ..    4854 - -11.4  -3.04144   GTTCCACGTGGAACA  CGGG-T-GGGCACGTTCC ACGT GGAACACGCCCGAGCCCG   CTACCGGCGGCGGCG  65 26
JRI60_RS00020    4350 ..    4380 -  -3.9  -3.04144   GTTCCACGTGGAACA      CCGGATGGGCGCGA GCCC CCGCGTC-ACCCGA       GTCCGAGCCCGAGCC   0 18
