locus-tag class description AAQM_RS00005 PF00308 Bacterial dnaA protein AAQM_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix AAQM_RS00005 PF11638 DnaA N-terminal domain AAQM_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AAQM_RS00010 PF02767 DNA polymerase III beta subunit, central domain AAQM_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AAQM_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus AAQM_RS00015 PF00204 DNA gyrase B AAQM_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS00015 PF01751 Toprim domain AAQM_RS00020 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_RS00025 PF14489 QueF-like protein AAQM_RS00045 PF00849 RNA pseudouridylate synthase AAQM_RS00050 PF10397 Adenylosuccinate lyase C-terminus AAQM_RS00050 PF00206 Lyase AAQM_RS00055 PF02867 Ribonucleotide reductase, barrel domain AAQM_RS00055 PF00317 Ribonucleotide reductase, all-alpha domain AAQM_RS00055 PF03477 ATP cone domain AAQM_RS00060 PF00268 Ribonucleotide reductase, small chain AAQM_RS00075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AAQM_RS00090 PF01928 CYTH domain AAQM_RS00095 PF03063 Prismane/CO dehydrogenase family AAQM_RS00105 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_RS00105 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AAQM_RS00110 PF00691 OmpA family AAQM_RS00110 PF05736 OprF membrane domain AAQM_RS00115 PF00318 Ribosomal protein S2 AAQM_RS00120 PF08240 Alcohol dehydrogenase GroES-like domain AAQM_RS00120 PF00107 Zinc-binding dehydrogenase AAQM_RS00125 PF01638 HxlR-like helix-turn-helix AAQM_RS00135 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AAQM_RS00135 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AAQM_RS00140 PF02637 GatB domain AAQM_RS00140 PF02934 GatB/GatE catalytic domain AAQM_RS00145 PF00639 PPIC-type PPIASE domain AAQM_RS00145 PF09312 SurA N-terminal domain AAQM_RS00155 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS00155 PF00072 Response regulator receiver domain AAQM_RS00160 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS00160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS00160 PF08447 PAS fold AAQM_RS00160 PF00989 PAS fold AAQM_RS00165 PF02589 LUD domain AAQM_RS00170 PF02589 LUD domain AAQM_RS00170 PF11870 Domain of unknown function (DUF3390) AAQM_RS00170 PF13183 4Fe-4S dicluster domain AAQM_RS00175 PF02754 Cysteine-rich domain AAQM_RS00185 PF01872 RibD C-terminal domain AAQM_RS00185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AAQM_RS00190 PF00364 Biotin-requiring enzyme AAQM_RS00195 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AAQM_RS00195 PF00289 Biotin carboxylase, N-terminal domain AAQM_RS00195 PF02785 Biotin carboxylase C-terminal domain AAQM_RS00200 PF00271 Helicase conserved C-terminal domain AAQM_RS00200 PF00270 DEAD/DEAH box helicase AAQM_RS00205 PF01384 Phosphate transporter family AAQM_RS00215 PF00733 Asparagine synthase AAQM_RS00215 PF13537 Glutamine amidotransferase domain AAQM_RS00225 PF00881 Nitroreductase family AAQM_RS00230 PF13085 2Fe-2S iron-sulfur cluster binding domain AAQM_RS00235 PF02910 Fumarate reductase flavoprotein C-term AAQM_RS00235 PF00890 FAD binding domain AAQM_RS00245 PF02562 PhoH-like protein AAQM_RS00245 PF13638 PIN domain AAQM_RS00255 PF16193 AAA C-terminal domain AAQM_RS00255 PF05496 Holliday junction DNA helicase RuvB P-loop domain AAQM_RS00255 PF12002 MgsA AAA+ ATPase C terminal AAQM_RS00255 PF01661 Macro domain AAQM_RS00260 PF01479 S4 domain AAQM_RS00260 PF00849 RNA pseudouridylate synthase AAQM_RS00265 PF01380 SIS domain AAQM_RS00265 PF00571 CBS domain AAQM_RS00270 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AAQM_RS00270 PF17770 Ribonuclease J C-terminal domain AAQM_RS00270 PF00753 Metallo-beta-lactamase superfamily AAQM_RS00275 PF00398 Ribosomal RNA adenine dimethylase AAQM_RS00280 PF00977 Histidine biosynthesis protein AAQM_RS00295 PF04055 Radical SAM superfamily AAQM_RS00300 PF00749 tRNA synthetases class I (E and Q), catalytic domain AAQM_RS00305 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AAQM_RS00310 PF00072 Response regulator receiver domain AAQM_RS00310 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS00335 PF00873 AcrB/AcrD/AcrF family AAQM_RS00340 PF04264 YceI-like domain AAQM_RS00350 PF01554 MatE AAQM_RS00355 PF01842 ACT domain AAQM_RS00355 PF00742 Homoserine dehydrogenase AAQM_RS00355 PF03447 Homoserine dehydrogenase, NAD binding domain AAQM_RS00360 PF00155 Aminotransferase class I and II AAQM_RS00370 PF00588 SpoU rRNA Methylase family AAQM_RS00370 PF08032 RNA 2'-O ribose methyltransferase substrate binding AAQM_RS00375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AAQM_RS00380 PF01197 Ribosomal protein L31 AAQM_RS00415 PF14659 Phage integrase, N-terminal SAM-like domain AAQM_RS00415 PF00589 Phage integrase family AAQM_RS00495 PF02222 ATP-grasp domain AAQM_RS00505 PF01678 Diaminopimelate epimerase AAQM_RS00510 PF01121 Dephospho-CoA kinase AAQM_RS00515 PF17284 Spermidine synthase tetramerisation domain AAQM_RS00520 PF02769 AIR synthase related protein, C-terminal domain AAQM_RS00520 PF00586 AIR synthase related protein, N-terminal domain AAQM_RS00525 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AAQM_RS00525 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AAQM_RS00530 PF02678 Pirin AAQM_RS00530 PF17954 Quercetinase C-terminal cupin domain AAQM_RS00535 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AAQM_RS00545 PF01047 MarR family AAQM_RS00550 PF00266 Aminotransferase class-V AAQM_RS00555 PF13393 Histidyl-tRNA synthetase AAQM_RS00560 PF00709 Adenylosuccinate synthetase AAQM_RS00570 PF00117 Glutamine amidotransferase class-I AAQM_RS00570 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AAQM_RS00590 PF02542 YgbB family AAQM_RS00590 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AAQM_RS00605 PF01964 Radical SAM ThiC family AAQM_RS00610 PF10609 NUBPL iron-transfer P-loop NTPase AAQM_RS00610 PF01883 Iron-sulfur cluster assembly protein AAQM_RS00620 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AAQM_RS00620 PF01502 Phosphoribosyl-AMP cyclohydrolase AAQM_RS00635 PF01063 Amino-transferase class IV AAQM_RS00645 PF00925 GTP cyclohydrolase II AAQM_RS00655 PF02310 B12 binding domain AAQM_RS00655 PF02607 B12 binding domain AAQM_RS00655 PF02965 Vitamin B12 dependent methionine synthase, activation domain AAQM_RS00655 PF00809 Pterin binding enzyme AAQM_RS00655 PF02574 Homocysteine S-methyltransferase AAQM_RS00660 PF10417 C-terminal domain of 1-Cys peroxiredoxin AAQM_RS00660 PF00578 AhpC/TSA family AAQM_RS00675 PF00465 Iron-containing alcohol dehydrogenase AAQM_RS00680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS00680 PF00497 Bacterial extracellular solute-binding proteins, family 3 AAQM_RS00680 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS00680 PF00072 Response regulator receiver domain AAQM_RS00680 PF01627 Hpt domain AAQM_RS00680 PF00989 PAS fold AAQM_RS00690 PF00768 D-alanyl-D-alanine carboxypeptidase AAQM_RS00690 PF07943 Penicillin-binding protein 5, C-terminal domain AAQM_RS00705 PF02664 S-Ribosylhomocysteinase (LuxS) AAQM_RS00725 PF07273 Protein of unknown function (DUF1439) AAQM_RS00730 PF02405 Permease MlaE AAQM_RS00735 PF09383 NIL domain AAQM_RS00735 PF00005 ABC transporter AAQM_RS00750 PF05145 Transition state regulatory protein AbrB AAQM_RS00755 PF01638 HxlR-like helix-turn-helix AAQM_RS00760 PF02525 Flavodoxin-like fold AAQM_RS00765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAQM_RS00770 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AAQM_RS00770 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AAQM_RS00780 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AAQM_RS00785 PF13419 Haloacid dehalogenase-like hydrolase AAQM_RS00790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AAQM_RS00795 PF00380 Ribosomal protein S9/S16 AAQM_RS00800 PF00572 Ribosomal protein L13 AAQM_RS00805 PF13493 Domain of unknown function (DUF4118) AAQM_RS00805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS00805 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS00805 PF02702 Osmosensitive K+ channel His kinase sensor domain AAQM_RS00810 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS00810 PF00072 Response regulator receiver domain AAQM_RS00820 PF01895 PhoU domain AAQM_RS00825 PF00005 ABC transporter AAQM_RS00830 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_RS00835 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_RS00840 PF12849 PBP superfamily domain AAQM_RS00850 PF00472 RF-1 domain AAQM_RS00850 PF03462 PCRF domain AAQM_RS00855 PF01649 Ribosomal protein S20 AAQM_RS00860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AAQM_RS00860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AAQM_RS00860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AAQM_RS00860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AAQM_RS00865 PF01252 Signal peptidase (SPase) II AAQM_RS00870 PF00330 Aconitase family (aconitate hydratase) AAQM_RS00875 PF12804 MobA-like NTP transferase domain AAQM_RS00880 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_RS00895 PF00453 Ribosomal protein L20 AAQM_RS00900 PF01632 Ribosomal protein L35 AAQM_RS00905 PF00707 Translation initiation factor IF-3, C-terminal domain AAQM_RS00905 PF05198 Translation initiation factor IF-3, N-terminal domain AAQM_RS00910 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AAQM_RS00910 PF03129 Anticodon binding domain AAQM_RS00910 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AAQM_RS00945 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AAQM_RS00945 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AAQM_RS00965 PF02801 Beta-ketoacyl synthase, C-terminal domain AAQM_RS00965 PF00668 Condensation domain AAQM_RS00965 PF08659 KR domain AAQM_RS00965 PF00550 Phosphopantetheine attachment site AAQM_RS00965 PF16197 Ketoacyl-synthetase C-terminal extension AAQM_RS00965 PF14765 Polyketide synthase dehydratase AAQM_RS00965 PF00501 AMP-binding enzyme AAQM_RS00965 PF13193 AMP-binding enzyme C-terminal domain AAQM_RS00965 PF00109 Beta-ketoacyl synthase, N-terminal domain AAQM_RS00970 PF00550 Phosphopantetheine attachment site AAQM_RS00980 PF00005 ABC transporter AAQM_RS01010 PF00221 Aromatic amino acid lyase AAQM_RS01030 PF04820 Tryptophan halogenase AAQM_RS01035 PF00550 Phosphopantetheine attachment site AAQM_RS01040 PF02801 Beta-ketoacyl synthase, C-terminal domain AAQM_RS01040 PF00109 Beta-ketoacyl synthase, N-terminal domain AAQM_RS01055 PF12697 Alpha/beta hydrolase family AAQM_RS01070 PF13288 DXP reductoisomerase C-terminal domain AAQM_RS01070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AAQM_RS01070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AAQM_RS01090 PF00814 Glycoprotease family AAQM_RS01100 PF01256 Carbohydrate kinase AAQM_RS01100 PF03853 YjeF-related protein N-terminus AAQM_RS01105 PF03091 CutA1 divalent ion tolerance protein AAQM_RS01110 PF05690 Thiazole biosynthesis protein ThiG AAQM_RS01150 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AAQM_RS01155 PF08502 LeuA allosteric (dimerisation) domain AAQM_RS01155 PF00682 HMGL-like AAQM_RS01170 PF01699 Sodium/calcium exchanger protein AAQM_RS01175 PF00672 HAMP domain AAQM_RS01175 PF02203 Tar ligand binding domain homologue AAQM_RS01175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS01190 PF08448 PAS fold AAQM_RS01190 PF08447 PAS fold AAQM_RS01190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS01195 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS01195 PF00072 Response regulator receiver domain AAQM_RS01205 PF03412 Peptidase C39 family AAQM_RS01205 PF00005 ABC transporter AAQM_RS01205 PF00664 ABC transporter transmembrane region AAQM_RS01220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS01220 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS01220 PF00989 PAS fold AAQM_RS01225 PF02780 Transketolase, C-terminal domain AAQM_RS01225 PF02779 Transketolase, pyrimidine binding domain AAQM_RS01225 PF00456 Transketolase, thiamine diphosphate binding domain AAQM_RS01240 PF03788 LrgA family AAQM_RS01245 PF04172 LrgB-like family AAQM_RS01255 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AAQM_RS01275 PF00916 Sulfate permease family AAQM_RS01275 PF01740 STAS domain AAQM_RS01280 PF00501 AMP-binding enzyme AAQM_RS01280 PF01553 Acyltransferase AAQM_RS01290 PF01966 HD domain AAQM_RS01290 PF08335 GlnD PII-uridylyltransferase AAQM_RS01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS01300 PF17203 Single cache domain 3 AAQM_RS01300 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AAQM_RS01300 PF00989 PAS fold AAQM_RS01315 PF00909 Ammonium Transporter Family AAQM_RS01320 PF00543 Nitrogen regulatory protein P-II AAQM_RS01325 PF00909 Ammonium Transporter Family AAQM_RS01330 PF00543 Nitrogen regulatory protein P-II AAQM_RS01340 PF02154 Flagellar motor switch protein FliM AAQM_RS01340 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AAQM_RS01345 PF02119 Flagellar P-ring protein AAQM_RS01355 PF01313 Bacterial export proteins, family 3 AAQM_RS01380 PF02107 Flagellar L-ring protein AAQM_RS01385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_RS01385 PF00460 Flagella basal body rod protein AAQM_RS01390 PF02465 Flagellar hook-associated protein 2 N-terminus AAQM_RS01390 PF07195 Flagellar hook-associated protein 2 C-terminus AAQM_RS01395 PF02561 Flagellar protein FliS AAQM_RS01405 PF01171 PP-loop family AAQM_RS01410 PF00919 Uncharacterized protein family UPF0004 AAQM_RS01410 PF18693 TRAM domain AAQM_RS01410 PF04055 Radical SAM superfamily AAQM_RS01415 PF02569 Pantoate-beta-alanine ligase AAQM_RS01420 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_RS01425 PF01648 4'-phosphopantetheinyl transferase superfamily AAQM_RS01430 PF03652 Holliday junction resolvase AAQM_RS01445 PF00923 Transaldolase/Fructose-6-phosphate aldolase AAQM_RS01450 PF01474 Class-II DAHP synthetase family AAQM_RS01455 PF03502 Nucleoside-specific channel-forming protein, Tsx AAQM_RS01460 PF03960 ArsC family AAQM_RS01465 PF02686 Glu-tRNAGln amidotransferase C subunit AAQM_RS01470 PF01702 Queuine tRNA-ribosyltransferase AAQM_RS01480 PF00155 Aminotransferase class I and II AAQM_RS01490 PF01225 Mur ligase family, catalytic domain AAQM_RS01490 PF02875 Mur ligase family, glutamate ligase domain AAQM_RS01490 PF08245 Mur ligase middle domain AAQM_RS01500 PF04748 Divergent polysaccharide deacetylase AAQM_RS01505 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AAQM_RS01505 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AAQM_RS01510 PF00773 RNB domain AAQM_RS01515 PF02623 FliW protein AAQM_RS01525 PF01250 Ribosomal protein S6 AAQM_RS01530 PF00436 Single-strand binding protein family AAQM_RS01535 PF01084 Ribosomal protein S18 AAQM_RS01545 PF01406 tRNA synthetases class I (C) catalytic domain AAQM_RS01545 PF09190 DALR domain AAQM_RS01550 PF13184 NusA-like KH domain AAQM_RS01550 PF08529 NusA N-terminal domain AAQM_RS01560 PF04055 Radical SAM superfamily AAQM_RS01560 PF00919 Uncharacterized protein family UPF0004 AAQM_RS01560 PF01938 TRAM domain AAQM_RS01565 PF04028 Domain of unknown function (DUF374) AAQM_RS01575 PF04055 Radical SAM superfamily AAQM_RS01585 PF00484 Carbonic anhydrase AAQM_RS01590 PF00155 Aminotransferase class I and II AAQM_RS01595 PF02021 Uncharacterised protein family UPF0102 AAQM_RS01610 PF00223 Photosystem I psaA/psaB protein AAQM_RS01610 PF00691 OmpA family AAQM_RS01615 PF00391 PEP-utilising enzyme, mobile domain AAQM_RS01615 PF02887 Pyruvate kinase, alpha/beta domain AAQM_RS01615 PF00224 Pyruvate kinase, barrel domain AAQM_RS01625 PF00202 Aminotransferase class-III AAQM_RS01635 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AAQM_RS01635 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AAQM_RS01640 PF00425 chorismate binding enzyme AAQM_RS01645 PF01063 Amino-transferase class IV AAQM_RS01660 PF03591 AzlC protein AAQM_RS01665 PF05437 Branched-chain amino acid transport protein (AzlD) AAQM_RS01670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AAQM_RS01670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AAQM_RS01675 PF02504 Fatty acid synthesis protein AAQM_RS01680 PF01783 Ribosomal L32p protein family AAQM_RS01690 PF00334 Nucleoside diphosphate kinase AAQM_RS01695 PF00037 4Fe-4S binding domain AAQM_RS01700 PF00578 AhpC/TSA family AAQM_RS01700 PF10417 C-terminal domain of 1-Cys peroxiredoxin AAQM_RS01705 PF07497 Rho termination factor, RNA-binding domain AAQM_RS01705 PF07498 Rho termination factor, N-terminal domain AAQM_RS01705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AAQM_RS01710 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AAQM_RS01710 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AAQM_RS01715 PF01177 Asp/Glu/Hydantoin racemase AAQM_RS01720 PF12170 DNA polymerase III tau subunit V interacting with alpha AAQM_RS01720 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AAQM_RS01720 PF12169 DNA polymerase III subunits gamma and tau domain III AAQM_RS01730 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AAQM_RS01730 PF03900 Porphobilinogen deaminase, C-terminal domain AAQM_RS01740 PF00072 Response regulator receiver domain AAQM_RS01740 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS01745 PF04303 PrpF protein AAQM_RS01750 PF00330 Aconitase family (aconitate hydratase) AAQM_RS01750 PF00694 Aconitase C-terminal domain AAQM_RS01755 PF00285 Citrate synthase, C-terminal domain AAQM_RS01770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AAQM_RS01770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AAQM_RS01795 PF00270 DEAD/DEAH box helicase AAQM_RS01795 PF00271 Helicase conserved C-terminal domain AAQM_RS01795 PF16124 RecQ zinc-binding AAQM_RS01795 PF09382 RQC domain AAQM_RS01795 PF00570 HRDC domain AAQM_RS01800 PF13649 Methyltransferase domain AAQM_RS01815 PF01863 Protein of unknown function DUF45 AAQM_RS01830 PF00350 Dynamin family AAQM_RS01835 PF00350 Dynamin family AAQM_RS01840 PF13183 4Fe-4S dicluster domain AAQM_RS01840 PF13085 2Fe-2S iron-sulfur cluster binding domain AAQM_RS01845 PF02910 Fumarate reductase flavoprotein C-term AAQM_RS01845 PF00890 FAD binding domain AAQM_RS01850 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AAQM_RS01855 PF00361 Proton-conducting membrane transporter AAQM_RS01860 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AAQM_RS01860 PF00361 Proton-conducting membrane transporter AAQM_RS01865 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AAQM_RS01865 PF00361 Proton-conducting membrane transporter AAQM_RS01870 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AAQM_RS01875 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AAQM_RS01880 PF12838 4Fe-4S dicluster domain AAQM_RS01885 PF00146 NADH dehydrogenase AAQM_RS01890 PF00384 Molybdopterin oxidoreductase AAQM_RS01890 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AAQM_RS01890 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AAQM_RS01895 PF00285 Citrate synthase, C-terminal domain AAQM_RS01900 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AAQM_RS01900 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AAQM_RS01900 PF10531 SLBB domain AAQM_RS01910 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AAQM_RS01910 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AAQM_RS01915 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AAQM_RS01920 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AAQM_RS01925 PF00155 Aminotransferase class I and II AAQM_RS01930 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AAQM_RS01935 PF12821 Threonine/Serine exporter, ThrE AAQM_RS01935 PF06738 Putative threonine/serine exporter AAQM_RS01940 PF06738 Putative threonine/serine exporter AAQM_RS01950 PF03309 Type III pantothenate kinase AAQM_RS01955 PF01634 ATP phosphoribosyltransferase AAQM_RS01965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS01965 PF02203 Tar ligand binding domain homologue AAQM_RS01965 PF00672 HAMP domain AAQM_RS01975 PF00579 tRNA synthetases class I (W and Y) AAQM_RS01990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AAQM_RS01990 PF02403 Seryl-tRNA synthetase N-terminal domain AAQM_RS02005 PF08447 PAS fold AAQM_RS02005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS02025 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AAQM_RS02030 PF00037 4Fe-4S binding domain AAQM_RS02030 PF12801 4Fe-4S binding domain AAQM_RS02035 PF12838 4Fe-4S dicluster domain AAQM_RS02035 PF12800 4Fe-4S binding domain AAQM_RS02040 PF10518 TAT (twin-arginine translocation) pathway signal sequence AAQM_RS02040 PF01568 Molydopterin dinucleotide binding domain AAQM_RS02040 PF00384 Molybdopterin oxidoreductase AAQM_RS02040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AAQM_RS02045 PF03480 Bacterial extracellular solute-binding protein, family 7 AAQM_RS02050 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AAQM_RS02055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AAQM_RS02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS02060 PF08447 PAS fold AAQM_RS02060 PF08448 PAS fold AAQM_RS02065 PF00072 Response regulator receiver domain AAQM_RS02070 PF03737 Aldolase/RraA AAQM_RS02075 PF10414 Sirohaem synthase dimerisation region AAQM_RS02075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AAQM_RS02090 PF00591 Glycosyl transferase family, a/b domain AAQM_RS02090 PF02885 Glycosyl transferase family, helical bundle domain AAQM_RS02095 PF06463 Molybdenum Cofactor Synthesis C AAQM_RS02095 PF04055 Radical SAM superfamily AAQM_RS02110 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AAQM_RS02110 PF02222 ATP-grasp domain AAQM_RS02115 PF00731 AIR carboxylase AAQM_RS02120 PF00312 Ribosomal protein S15 AAQM_RS02125 PF02082 Transcriptional regulator AAQM_RS02140 PF00672 HAMP domain AAQM_RS02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS02140 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS02145 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS02145 PF00072 Response regulator receiver domain AAQM_RS02155 PF01116 Fructose-bisphosphate aldolase class-II AAQM_RS02160 PF08402 TOBE domain AAQM_RS02160 PF00005 ABC transporter AAQM_RS02165 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_RS02170 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_RS02175 PF13416 Bacterial extracellular solute-binding protein AAQM_RS02180 PF00072 Response regulator receiver domain AAQM_RS02180 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS02190 PF00171 Aldehyde dehydrogenase family AAQM_RS02200 PF00313 'Cold-shock' DNA-binding domain AAQM_RS02205 PF02472 Biopolymer transport protein ExbD/TolR AAQM_RS02210 PF01618 MotA/TolQ/ExbB proton channel family AAQM_RS02220 PF08447 PAS fold AAQM_RS02220 PF00989 PAS fold AAQM_RS02220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS02220 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS02225 PF03707 Bacterial signalling protein N terminal repeat AAQM_RS02225 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS02225 PF00563 EAL domain AAQM_RS02230 PF01202 Shikimate kinase AAQM_RS02235 PF00815 Histidinol dehydrogenase AAQM_RS02245 PF00348 Polyprenyl synthetase AAQM_RS02250 PF01488 Shikimate / quinate 5-dehydrogenase AAQM_RS02250 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AAQM_RS02250 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AAQM_RS02255 PF04073 Aminoacyl-tRNA editing domain AAQM_RS02255 PF03129 Anticodon binding domain AAQM_RS02255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AAQM_RS02260 PF00924 Mechanosensitive ion channel AAQM_RS02260 PF05552 Conserved TM helix AAQM_RS02265 PF01966 HD domain AAQM_RS02265 PF01743 Poly A polymerase head domain AAQM_RS02265 PF12627 Probable RNA and SrmB- binding site of polymerase A AAQM_RS02285 PF02699 Preprotein translocase subunit AAQM_RS02290 PF02355 Protein export membrane protein AAQM_RS02295 PF07549 SecD/SecF GG Motif AAQM_RS02295 PF02355 Protein export membrane protein AAQM_RS02305 PF13603 Leucyl-tRNA synthetase, Domain 2 AAQM_RS02305 PF00133 tRNA synthetases class I (I, L, M and V) AAQM_RS02305 PF09334 tRNA synthetases class I (M) AAQM_RS02315 PF08245 Mur ligase middle domain AAQM_RS02325 PF00999 Sodium/hydrogen exchanger family AAQM_RS02325 PF02254 TrkA-N domain AAQM_RS02355 PF02559 CarD-like/TRCF domain AAQM_RS02355 PF00270 DEAD/DEAH box helicase AAQM_RS02355 PF00271 Helicase conserved C-terminal domain AAQM_RS02355 PF03461 TRCF domain AAQM_RS02355 PF17757 UvrB interaction domain AAQM_RS02365 PF00563 EAL domain AAQM_RS02365 PF00360 Phytochrome region AAQM_RS02365 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS02365 PF01590 GAF domain AAQM_RS02375 PF00072 Response regulator receiver domain AAQM_RS02375 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS02390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS02390 PF02743 Cache domain AAQM_RS02390 PF00672 HAMP domain AAQM_RS02395 PF02954 Bacterial regulatory protein, Fis family AAQM_RS02395 PF00072 Response regulator receiver domain AAQM_RS02395 PF00158 Sigma-54 interaction domain AAQM_RS02400 PF13426 PAS domain AAQM_RS02400 PF13581 Histidine kinase-like ATPase domain AAQM_RS02400 PF07536 HWE histidine kinase AAQM_RS02405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS02405 PF00672 HAMP domain AAQM_RS02405 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS02410 PF13277 YmdB-like protein AAQM_RS02425 PF01209 ubiE/COQ5 methyltransferase family AAQM_RS02430 PF13742 OB-fold nucleic acid binding domain AAQM_RS02430 PF02601 Exonuclease VII, large subunit AAQM_RS02435 PF01584 CheW-like domain AAQM_RS02440 PF00072 Response regulator receiver domain AAQM_RS02440 PF00158 Sigma-54 interaction domain AAQM_RS02440 PF02954 Bacterial regulatory protein, Fis family AAQM_RS02445 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AAQM_RS02455 PF02261 Aspartate decarboxylase AAQM_RS02460 PF02575 YbaB/EbfC DNA-binding family AAQM_RS02465 PF00348 Polyprenyl synthetase AAQM_RS02470 PF00166 Chaperonin 10 Kd subunit AAQM_RS02475 PF00118 TCP-1/cpn60 chaperonin family AAQM_RS02485 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS02485 PF00672 HAMP domain AAQM_RS02485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS02490 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS02490 PF00072 Response regulator receiver domain AAQM_RS02495 PF00149 Calcineurin-like phosphoesterase AAQM_RS02520 PF12704 MacB-like periplasmic core domain AAQM_RS02520 PF02687 FtsX-like permease family AAQM_RS02520 PF00005 ABC transporter AAQM_RS02525 PF02687 FtsX-like permease family AAQM_RS02525 PF00005 ABC transporter AAQM_RS02525 PF12704 MacB-like periplasmic core domain AAQM_RS02530 PF00459 Inositol monophosphatase family AAQM_RS02535 PF01380 SIS domain AAQM_RS02550 PF02772 S-adenosylmethionine synthetase, central domain AAQM_RS02550 PF00438 S-adenosylmethionine synthetase, N-terminal domain AAQM_RS02550 PF02773 S-adenosylmethionine synthetase, C-terminal domain AAQM_RS02555 PF01039 Carboxyl transferase domain AAQM_RS02555 PF17848 Acetyl-coA carboxylase zinc finger domain AAQM_RS02560 PF02581 Thiamine monophosphate synthase AAQM_RS02565 PF02590 Predicted SPOUT methyltransferase AAQM_RS02575 PF01207 Dihydrouridine synthase (Dus) AAQM_RS02585 PF01434 Peptidase family M41 AAQM_RS02585 PF17862 AAA+ lid domain AAQM_RS02585 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_RS02590 PF00682 HMGL-like AAQM_RS02590 PF08502 LeuA allosteric (dimerisation) domain AAQM_RS02605 PF05190 MutS family domain IV AAQM_RS02605 PF05192 MutS domain III AAQM_RS02605 PF05188 MutS domain II AAQM_RS02605 PF00488 MutS domain V AAQM_RS02605 PF01624 MutS domain I AAQM_RS02610 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS02615 PF00977 Histidine biosynthesis protein AAQM_RS02620 PF08338 Domain of unknown function (DUF1731) AAQM_RS02620 PF01370 NAD dependent epimerase/dehydratase family AAQM_RS02625 PF00117 Glutamine amidotransferase class-I AAQM_RS02640 PF06421 GTP-binding protein LepA C-terminus AAQM_RS02640 PF00679 Elongation factor G C-terminus AAQM_RS02640 PF00009 Elongation factor Tu GTP binding domain AAQM_RS02640 PF03144 Elongation factor Tu domain 2 AAQM_RS02645 PF00691 OmpA family AAQM_RS02645 PF05736 OprF membrane domain AAQM_RS02650 PF05736 OprF membrane domain AAQM_RS02650 PF00691 OmpA family AAQM_RS02655 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AAQM_RS02655 PF14572 Phosphoribosyl synthetase-associated domain AAQM_RS02675 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AAQM_RS02680 PF01321 Creatinase/Prolidase N-terminal domain AAQM_RS02680 PF00557 Metallopeptidase family M24 AAQM_RS02685 PF01220 Dehydroquinase class II AAQM_RS02690 PF01979 Amidohydrolase family AAQM_RS02695 PF01343 Peptidase family S49 AAQM_RS02700 PF00871 Acetokinase family AAQM_RS02705 PF01515 Phosphate acetyl/butaryl transferase AAQM_RS02710 PF00871 Acetokinase family AAQM_RS02720 PF00929 Exonuclease AAQM_RS02730 PF00474 Sodium:solute symporter family AAQM_RS02740 PF00929 Exonuclease AAQM_RS02750 PF00474 Sodium:solute symporter family AAQM_RS02760 PF00072 Response regulator receiver domain AAQM_RS02760 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS02765 PF13426 PAS domain AAQM_RS02765 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS02765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS02765 PF00672 HAMP domain AAQM_RS02810 PF00994 Probable molybdopterin binding domain AAQM_RS02810 PF18146 Damage-inducible protein CinA KH domain AAQM_RS02810 PF02464 Competence-damaged protein AAQM_RS02815 PF06039 Malate:quinone oxidoreductase (Mqo) AAQM_RS02820 PF08264 Anticodon-binding domain of tRNA AAQM_RS02820 PF00133 tRNA synthetases class I (I, L, M and V) AAQM_RS02835 PF02875 Mur ligase family, glutamate ligase domain AAQM_RS02835 PF08245 Mur ligase middle domain AAQM_RS02840 PF08448 PAS fold AAQM_RS02840 PF08447 PAS fold AAQM_RS02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS02855 PF01882 Protein of unknown function DUF58 AAQM_RS02860 PF17863 AAA lid domain AAQM_RS02860 PF07726 ATPase family associated with various cellular activities (AAA) AAQM_RS02865 PF00318 Ribosomal protein S2 AAQM_RS02870 PF00889 Elongation factor TS AAQM_RS02875 PF00005 ABC transporter AAQM_RS02885 PF00625 Guanylate kinase AAQM_RS02890 PF00563 EAL domain AAQM_RS02890 PF08448 PAS fold AAQM_RS02890 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS02895 PF00403 Heavy-metal-associated domain AAQM_RS02910 PF00005 ABC transporter AAQM_RS02910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AAQM_RS02915 PF00762 Ferrochelatase AAQM_RS02920 PF01871 AMMECR1 AAQM_RS02925 PF01875 Memo-like protein AAQM_RS02930 PF02698 DUF218 domain AAQM_RS02935 PF00005 ABC transporter AAQM_RS02940 PF00950 ABC 3 transport family AAQM_RS02945 PF02690 Na+/Pi-cotransporter AAQM_RS02970 PF13509 S1 domain AAQM_RS02970 PF17783 CvfB-like winged helix domain AAQM_RS02975 PF08534 Redoxin AAQM_RS02990 PF00174 Oxidoreductase molybdopterin binding domain AAQM_RS02995 PF01794 Ferric reductase like transmembrane component AAQM_RS03000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AAQM_RS03005 PF00873 AcrB/AcrD/AcrF family AAQM_RS03015 PF00589 Phage integrase family AAQM_RS03015 PF14659 Phage integrase, N-terminal SAM-like domain AAQM_RS03045 PF00580 UvrD/REP helicase N-terminal domain AAQM_RS03045 PF13361 UvrD-like helicase C-terminal domain AAQM_RS03050 PF02254 TrkA-N domain AAQM_RS03050 PF00999 Sodium/hydrogen exchanger family AAQM_RS03050 PF02080 TrkA-C domain AAQM_RS03055 PF00174 Oxidoreductase molybdopterin binding domain AAQM_RS03060 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AAQM_RS03115 PF00753 Metallo-beta-lactamase superfamily AAQM_RS03130 PF10458 Valyl tRNA synthetase tRNA binding arm AAQM_RS03130 PF00133 tRNA synthetases class I (I, L, M and V) AAQM_RS03130 PF08264 Anticodon-binding domain of tRNA AAQM_RS03135 PF01554 MatE AAQM_RS03140 PF00583 Acetyltransferase (GNAT) family AAQM_RS03150 PF09962 Uncharacterized conserved protein (DUF2196) AAQM_RS03155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AAQM_RS03165 PF00873 AcrB/AcrD/AcrF family AAQM_RS03170 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AAQM_RS03175 PF06339 Ectoine synthase AAQM_RS03180 PF00202 Aminotransferase class-III AAQM_RS03185 PF00583 Acetyltransferase (GNAT) family AAQM_RS03195 PF04225 Opacity-associated protein A LysM-like domain AAQM_RS03195 PF01551 Peptidase family M23 AAQM_RS03205 PF00586 AIR synthase related protein, N-terminal domain AAQM_RS03205 PF02769 AIR synthase related protein, C-terminal domain AAQM_RS03205 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AAQM_RS03210 PF01808 AICARFT/IMPCHase bienzyme AAQM_RS03210 PF02142 MGS-like domain AAQM_RS03215 PF08447 PAS fold AAQM_RS03215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS03215 PF08448 PAS fold AAQM_RS03220 PF00202 Aminotransferase class-III AAQM_RS03220 PF06968 Biotin and Thiamin Synthesis associated domain AAQM_RS03220 PF04055 Radical SAM superfamily AAQM_RS03235 PF01557 Fumarylacetoacetate (FAA) hydrolase family AAQM_RS03240 PF01641 SelR domain AAQM_RS03245 PF01625 Peptide methionine sulfoxide reductase AAQM_RS03260 PF01351 Ribonuclease HII AAQM_RS03270 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS03275 PF02861 Clp amino terminal domain, pathogenicity island component AAQM_RS03275 PF10431 C-terminal, D2-small domain, of ClpB protein AAQM_RS03275 PF07724 AAA domain (Cdc48 subfamily) AAQM_RS03275 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_RS03275 PF17871 AAA lid domain AAQM_RS03280 PF00468 Ribosomal protein L34 AAQM_RS03285 PF00825 Ribonuclease P AAQM_RS03290 PF01809 Putative membrane protein insertion efficiency factor AAQM_RS03295 PF02096 60Kd inner membrane protein AAQM_RS03295 PF14849 YidC periplasmic domain AAQM_RS03305 PF10396 GTP-binding protein TrmE N-terminus AAQM_RS03305 PF12631 MnmE helical domain AAQM_RS03305 PF01926 50S ribosome-binding GTPase AAQM_RS03315 PF00300 Histidine phosphatase superfamily (branch 1) AAQM_RS03320 PF01435 Peptidase family M48 AAQM_RS03325 PF01264 Chorismate synthase AAQM_RS03330 PF14622 Ribonuclease-III-like AAQM_RS03330 PF00035 Double-stranded RNA binding motif AAQM_RS03340 PF08275 DNA primase catalytic core, N-terminal domain AAQM_RS03340 PF13662 Toprim domain AAQM_RS03340 PF16730 DnaG-primase C-terminal, helicase-binding domain AAQM_RS03340 PF01807 CHC2 zinc finger AAQM_RS03345 PF01042 Endoribonuclease L-PSP AAQM_RS03350 PF00829 Ribosomal prokaryotic L21 protein AAQM_RS03355 PF01016 Ribosomal L27 protein AAQM_RS03360 PF01926 50S ribosome-binding GTPase AAQM_RS03360 PF01018 GTP1/OBG AAQM_RS03365 PF00696 Amino acid kinase family AAQM_RS03370 PF02911 Formyl transferase, C-terminal domain AAQM_RS03370 PF00551 Formyl transferase AAQM_RS03380 PF08279 HTH domain AAQM_RS03380 PF03099 Biotin/lipoate A/B protein ligase family AAQM_RS03380 PF02237 Biotin protein ligase C terminal domain AAQM_RS03385 PF13614 AAA domain AAQM_RS03390 PF17762 HTH domain found in ParB protein AAQM_RS03390 PF02195 ParB-like nuclease domain AAQM_RS03400 PF00430 ATP synthase B/B' CF(0) AAQM_RS03405 PF00213 ATP synthase delta (OSCP) subunit AAQM_RS03410 PF00306 ATP synthase alpha/beta chain, C terminal domain AAQM_RS03410 PF02874 ATP synthase alpha/beta family, beta-barrel domain AAQM_RS03410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AAQM_RS03415 PF00231 ATP synthase AAQM_RS03420 PF02874 ATP synthase alpha/beta family, beta-barrel domain AAQM_RS03420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AAQM_RS03425 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AAQM_RS03430 PF01618 MotA/TolQ/ExbB proton channel family AAQM_RS03435 PF02472 Biopolymer transport protein ExbD/TolR AAQM_RS03445 PF04052 TolB amino-terminal domain AAQM_RS03450 PF00210 Ferritin-like domain AAQM_RS03455 PF00691 OmpA family AAQM_RS03455 PF01389 OmpA-like transmembrane domain AAQM_RS03465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AAQM_RS03470 PF00698 Acyl transferase domain AAQM_RS03475 PF01048 Phosphorylase superfamily AAQM_RS03480 PF01235 Sodium:alanine symporter family AAQM_RS03485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS03485 PF02743 Cache domain AAQM_RS03485 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS03490 PF00072 Response regulator receiver domain AAQM_RS03490 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS03495 PF00206 Lyase AAQM_RS03495 PF10415 Fumarase C C-terminus AAQM_RS03505 PF01368 DHH family AAQM_RS03505 PF02833 DHHA2 domain AAQM_RS03510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AAQM_RS03510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AAQM_RS03515 PF00958 GMP synthase C terminal domain AAQM_RS03515 PF03352 Methyladenine glycosylase AAQM_RS03515 PF13302 Acetyltransferase (GNAT) domain AAQM_RS03515 PF13673 Acetyltransferase (GNAT) domain AAQM_RS03515 PF00117 Glutamine amidotransferase class-I AAQM_RS03520 PF12833 Helix-turn-helix domain AAQM_RS03520 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AAQM_RS03525 PF08502 LeuA allosteric (dimerisation) domain AAQM_RS03525 PF00682 HMGL-like AAQM_RS03530 PF00491 Arginase family AAQM_RS03545 PF07715 TonB-dependent Receptor Plug Domain AAQM_RS03545 PF00593 TonB dependent receptor AAQM_RS03550 PF05958 tRNA (Uracil-5-)-methyltransferase AAQM_RS03565 PF08713 DNA alkylation repair enzyme AAQM_RS03570 PF04073 Aminoacyl-tRNA editing domain AAQM_RS03575 PF05088 Bacterial NAD-glutamate dehydrogenase AAQM_RS03590 PF08448 PAS fold AAQM_RS03590 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS03590 PF00563 EAL domain AAQM_RS03605 PF04403 Paraquat-inducible protein A AAQM_RS03610 PF02470 MlaD protein AAQM_RS03620 PF00072 Response regulator receiver domain AAQM_RS03625 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS03625 PF00672 HAMP domain AAQM_RS03625 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AAQM_RS03625 PF00072 Response regulator receiver domain AAQM_RS03625 PF01627 Hpt domain AAQM_RS03625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS03630 PF00072 Response regulator receiver domain AAQM_RS03635 PF07568 Histidine kinase AAQM_RS03635 PF13426 PAS domain AAQM_RS03635 PF13581 Histidine kinase-like ATPase domain AAQM_RS03650 PF04076 Bacterial OB fold (BOF) protein AAQM_RS03655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS03655 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS03655 PF08521 Two-component sensor kinase N-terminal AAQM_RS03660 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS03660 PF00072 Response regulator receiver domain AAQM_RS03670 PF00141 Peroxidase AAQM_RS03675 PF00230 Major intrinsic protein AAQM_RS03680 PF00183 Hsp90 protein AAQM_RS03710 PF03746 LamB/YcsF family AAQM_RS03720 PF02626 Carboxyltransferase domain, subdomain A and B AAQM_RS03730 PF00563 EAL domain AAQM_RS03745 PF00270 DEAD/DEAH box helicase AAQM_RS03745 PF03880 DbpA RNA binding domain AAQM_RS03745 PF00271 Helicase conserved C-terminal domain AAQM_RS03750 PF00563 EAL domain AAQM_RS03750 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS03750 PF03707 Bacterial signalling protein N terminal repeat AAQM_RS03765 PF01243 Pyridoxamine 5'-phosphate oxidase AAQM_RS03765 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AAQM_RS03770 PF01966 HD domain AAQM_RS03775 PF01242 6-pyruvoyl tetrahydropterin synthase AAQM_RS03780 PF04909 Amidohydrolase AAQM_RS03785 PF01502 Phosphoribosyl-AMP cyclohydrolase AAQM_RS03785 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AAQM_RS03790 PF01258 Prokaryotic dksA/traR C4-type zinc finger AAQM_RS03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS03815 PF08447 PAS fold AAQM_RS03815 PF08448 PAS fold AAQM_RS03825 PF02421 Ferrous iron transport protein B AAQM_RS03825 PF07664 Ferrous iron transport protein B C terminus AAQM_RS03825 PF17910 FeoB cytosolic helical domain AAQM_RS03825 PF04023 FeoA domain AAQM_RS03825 PF07670 Nucleoside recognition AAQM_RS03830 PF04023 FeoA domain AAQM_RS03840 PF00005 ABC transporter AAQM_RS03850 PF10636 Hemin uptake protein hemP AAQM_RS03855 PF07715 TonB-dependent Receptor Plug Domain AAQM_RS03855 PF00593 TonB dependent receptor AAQM_RS03860 PF07568 Histidine kinase AAQM_RS03860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS03860 PF12282 Signal transduction histidine kinase AAQM_RS03865 PF00072 Response regulator receiver domain AAQM_RS03870 PF02321 Outer membrane efflux protein AAQM_RS03875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AAQM_RS03880 PF00873 AcrB/AcrD/AcrF family AAQM_RS03885 PF13847 Methyltransferase domain AAQM_RS03890 PF07715 TonB-dependent Receptor Plug Domain AAQM_RS03890 PF00593 TonB dependent receptor AAQM_RS03910 PF02769 AIR synthase related protein, C-terminal domain AAQM_RS03910 PF00586 AIR synthase related protein, N-terminal domain AAQM_RS03915 PF01142 tRNA pseudouridine synthase D (TruD) AAQM_RS03925 PF02203 Tar ligand binding domain homologue AAQM_RS03925 PF00672 HAMP domain AAQM_RS03925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS03930 PF07499 RuvA, C-terminal domain AAQM_RS03930 PF01330 RuvA N terminal domain AAQM_RS03935 PF01820 D-ala D-ala ligase N-terminus AAQM_RS03935 PF07478 D-ala D-ala ligase C-terminus AAQM_RS03940 PF00561 alpha/beta hydrolase fold AAQM_RS03945 PF01225 Mur ligase family, catalytic domain AAQM_RS03945 PF08245 Mur ligase middle domain AAQM_RS03945 PF02875 Mur ligase family, glutamate ligase domain AAQM_RS03960 PF01266 FAD dependent oxidoreductase AAQM_RS03965 PF00338 Ribosomal protein S10p/S20e AAQM_RS03970 PF00297 Ribosomal protein L3 AAQM_RS03975 PF00573 Ribosomal protein L4/L1 family AAQM_RS03980 PF00276 Ribosomal protein L23 AAQM_RS03985 PF00181 Ribosomal Proteins L2, RNA binding domain AAQM_RS03985 PF03947 Ribosomal Proteins L2, C-terminal domain AAQM_RS03990 PF00203 Ribosomal protein S19 AAQM_RS03995 PF00237 Ribosomal protein L22p/L17e AAQM_RS04000 PF00189 Ribosomal protein S3, C-terminal domain AAQM_RS04000 PF07650 KH domain AAQM_RS04005 PF00252 Ribosomal protein L16p/L10e AAQM_RS04010 PF00831 Ribosomal L29 protein AAQM_RS04015 PF00366 Ribosomal protein S17 AAQM_RS04020 PF00238 Ribosomal protein L14p/L23e AAQM_RS04025 PF00467 KOW motif AAQM_RS04025 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AAQM_RS04030 PF00281 Ribosomal protein L5 AAQM_RS04030 PF00673 ribosomal L5P family C-terminus AAQM_RS04035 PF00253 Ribosomal protein S14p/S29e AAQM_RS04040 PF00410 Ribosomal protein S8 AAQM_RS04045 PF00347 Ribosomal protein L6 AAQM_RS04050 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AAQM_RS04055 PF03719 Ribosomal protein S5, C-terminal domain AAQM_RS04055 PF00333 Ribosomal protein S5, N-terminal domain AAQM_RS04060 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AAQM_RS04065 PF00344 SecY translocase AAQM_RS04070 PF00557 Metallopeptidase family M24 AAQM_RS04075 PF01176 Translation initiation factor 1A / IF-1 AAQM_RS04085 PF03167 Uracil DNA glycosylase superfamily AAQM_RS04095 PF00152 tRNA synthetases class II (D, K and N) AAQM_RS04095 PF02938 GAD domain AAQM_RS04095 PF01336 OB-fold nucleic acid binding domain AAQM_RS04110 PF04055 Radical SAM superfamily AAQM_RS04110 PF08497 Radical SAM N-terminal AAQM_RS04115 PF01810 LysE type translocator AAQM_RS04120 PF05191 Adenylate kinase, active site lid AAQM_RS04135 PF13426 PAS domain AAQM_RS04135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS04135 PF08447 PAS fold AAQM_RS04145 PF01168 Alanine racemase, N-terminal domain AAQM_RS04145 PF00842 Alanine racemase, C-terminal domain AAQM_RS04150 PF01541 GIY-YIG catalytic domain AAQM_RS04150 PF02151 UvrB/uvrC motif AAQM_RS04150 PF08459 UvrC Helix-hairpin-helix N-terminal AAQM_RS04155 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS04155 PF17158 Membrane-associated sensor, integral membrane domain AAQM_RS04165 PF04973 Nicotinamide mononucleotide transporter AAQM_RS04170 PF00255 Glutathione peroxidase AAQM_RS04175 PF13426 PAS domain AAQM_RS04175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS04175 PF08447 PAS fold AAQM_RS04180 PF02203 Tar ligand binding domain homologue AAQM_RS04180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS04180 PF00672 HAMP domain AAQM_RS04185 PF02203 Tar ligand binding domain homologue AAQM_RS04185 PF00672 HAMP domain AAQM_RS04185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS04190 PF01522 Polysaccharide deacetylase AAQM_RS04200 PF08360 QacR-like protein, C-terminal region AAQM_RS04200 PF00440 Bacterial regulatory proteins, tetR family AAQM_RS04205 PF00873 AcrB/AcrD/AcrF family AAQM_RS04210 PF00529 HlyD membrane-fusion protein of T1SS AAQM_RS04210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AAQM_RS04230 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS04230 PF08448 PAS fold AAQM_RS04235 PF03372 Endonuclease/Exonuclease/phosphatase family AAQM_RS04265 PF00342 Phosphoglucose isomerase AAQM_RS04270 PF00483 Nucleotidyl transferase AAQM_RS04275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AAQM_RS04275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AAQM_RS04275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AAQM_RS04275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AAQM_RS04310 PF06865 Pyrimidine/purine nucleoside phosphorylase AAQM_RS04330 PF06071 Protein of unknown function (DUF933) AAQM_RS04330 PF01926 50S ribosome-binding GTPase AAQM_RS04335 PF00860 Permease family AAQM_RS04340 PF00156 Phosphoribosyl transferase domain AAQM_RS04345 PF04241 Protein of unknown function (DUF423) AAQM_RS04360 PF00860 Permease family AAQM_RS04365 PF04461 Protein of unknown function (DUF520) AAQM_RS04375 PF00072 Response regulator receiver domain AAQM_RS04375 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS04380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS04385 PF00293 NUDIX domain AAQM_RS04395 PF02253 Phospholipase A1 AAQM_RS04400 PF00834 Ribulose-phosphate 3 epimerase family AAQM_RS04405 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AAQM_RS04410 PF00929 Exonuclease AAQM_RS04410 PF02811 PHP domain AAQM_RS04410 PF14579 Helix-hairpin-helix motif AAQM_RS04410 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AAQM_RS04410 PF07733 Bacterial DNA polymerase III alpha NTPase domain AAQM_RS04410 PF11490 DNA polymerase III polC-type N-terminus II AAQM_RS04410 PF14480 DNA polymerase III polC-type N-terminus I AAQM_RS04415 PF02824 TGS domain AAQM_RS04415 PF04607 Region found in RelA / SpoT proteins AAQM_RS04415 PF13291 ACT domain AAQM_RS04425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAQM_RS04430 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AAQM_RS04430 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AAQM_RS04430 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AAQM_RS04440 PF05175 Methyltransferase small domain AAQM_RS04445 PF03692 Putative zinc- or iron-chelating domain AAQM_RS04455 PF00218 Indole-3-glycerol phosphate synthase AAQM_RS04460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AAQM_RS04460 PF03466 LysR substrate binding domain AAQM_RS04465 PF01361 Tautomerase enzyme AAQM_RS04470 PF01168 Alanine racemase, N-terminal domain AAQM_RS04475 PF02163 Peptidase family M50 AAQM_RS04475 PF17820 PDZ domain AAQM_RS04480 PF01066 CDP-alcohol phosphatidyltransferase AAQM_RS04490 PF00701 Dihydrodipicolinate synthetase family AAQM_RS04505 PF01180 Dihydroorotate dehydrogenase AAQM_RS04510 PF00664 ABC transporter transmembrane region AAQM_RS04510 PF00005 ABC transporter AAQM_RS04515 PF03023 Lipid II flippase MurJ AAQM_RS04525 PF02915 Rubrerythrin AAQM_RS04535 PF01699 Sodium/calcium exchanger protein AAQM_RS04540 PF02130 Uncharacterized protein family UPF0054 AAQM_RS04550 PF18073 Rubredoxin metal binding domain AAQM_RS04585 PF03150 Di-haem cytochrome c peroxidase AAQM_RS04585 PF00034 Cytochrome c AAQM_RS04590 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS04590 PF03707 Bacterial signalling protein N terminal repeat AAQM_RS04590 PF00563 EAL domain AAQM_RS04600 PF00448 SRP54-type protein, GTPase domain AAQM_RS04605 PF00578 AhpC/TSA family AAQM_RS04615 PF01966 HD domain AAQM_RS04615 PF00013 KH domain AAQM_RS04615 PF12072 Domain of unknown function (DUF3552) AAQM_RS04625 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_RS04625 PF12911 N-terminal TM domain of oligopeptide transport permease C AAQM_RS04635 PF00106 short chain dehydrogenase AAQM_RS04650 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AAQM_RS04660 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS04660 PF00072 Response regulator receiver domain AAQM_RS04665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS04675 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AAQM_RS04675 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AAQM_RS04680 PF17151 Periplasmic sensor domain AAQM_RS04680 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS04685 PF09424 Yqey-like protein AAQM_RS04695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS04695 PF08447 PAS fold AAQM_RS04700 PF00672 HAMP domain AAQM_RS04700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS04700 PF02203 Tar ligand binding domain homologue AAQM_RS04705 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS04705 PF00072 Response regulator receiver domain AAQM_RS04715 PF08447 PAS fold AAQM_RS04715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS04715 PF08448 PAS fold AAQM_RS04720 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS04720 PF00072 Response regulator receiver domain AAQM_RS04725 PF05736 OprF membrane domain AAQM_RS04725 PF00691 OmpA family AAQM_RS04730 PF03412 Peptidase C39 family AAQM_RS04730 PF00005 ABC transporter AAQM_RS04730 PF00664 ABC transporter transmembrane region AAQM_RS04740 PF17874 MalT-like TPR region AAQM_RS04740 PF00196 Bacterial regulatory proteins, luxR family AAQM_RS04765 PF01966 HD domain AAQM_RS04770 PF16916 Dimerisation domain of Zinc Transporter AAQM_RS04770 PF01545 Cation efflux family AAQM_RS04775 PF00155 Aminotransferase class I and II AAQM_RS04795 PF00890 FAD binding domain AAQM_RS04795 PF02910 Fumarate reductase flavoprotein C-term AAQM_RS04800 PF00117 Glutamine amidotransferase class-I AAQM_RS04800 PF02540 NAD synthase AAQM_RS04800 PF00958 GMP synthase C terminal domain AAQM_RS04810 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AAQM_RS04815 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AAQM_RS04825 PF00180 Isocitrate/isopropylmalate dehydrogenase AAQM_RS04830 PF00106 short chain dehydrogenase AAQM_RS04835 PF00158 Sigma-54 interaction domain AAQM_RS04835 PF02954 Bacterial regulatory protein, Fis family AAQM_RS04835 PF00072 Response regulator receiver domain AAQM_RS04840 PF07568 Histidine kinase AAQM_RS04840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS04840 PF12282 Signal transduction histidine kinase AAQM_RS04850 PF02332 Methane/Phenol/Toluene Hydroxylase AAQM_RS04855 PF02406 MmoB/DmpM family AAQM_RS04860 PF02332 Methane/Phenol/Toluene Hydroxylase AAQM_RS04860 PF04945 YHS domain AAQM_RS04870 PF00970 Oxidoreductase FAD-binding domain AAQM_RS04870 PF00175 Oxidoreductase NAD-binding domain AAQM_RS04870 PF00111 2Fe-2S iron-sulfur cluster binding domain AAQM_RS04875 PF01925 Sulfite exporter TauE/SafE AAQM_RS04880 PF00970 Oxidoreductase FAD-binding domain AAQM_RS04880 PF00175 Oxidoreductase NAD-binding domain AAQM_RS04880 PF00111 2Fe-2S iron-sulfur cluster binding domain AAQM_RS04885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AAQM_RS04890 PF03928 Haem-degrading AAQM_RS04895 PF00171 Aldehyde dehydrogenase family AAQM_RS04905 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AAQM_RS04905 PF01118 Semialdehyde dehydrogenase, NAD binding domain AAQM_RS04920 PF01361 Tautomerase enzyme AAQM_RS04925 PF00296 Luciferase-like monooxygenase AAQM_RS04930 PF00561 alpha/beta hydrolase fold AAQM_RS04935 PF08546 Ketopantoate reductase PanE/ApbA C terminal AAQM_RS04935 PF02558 Ketopantoate reductase PanE/ApbA AAQM_RS04950 PF01842 ACT domain AAQM_RS04950 PF01817 Chorismate mutase type II AAQM_RS04950 PF00800 Prephenate dehydratase AAQM_RS04955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS04955 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS04955 PF13493 Domain of unknown function (DUF4118) AAQM_RS04955 PF02702 Osmosensitive K+ channel His kinase sensor domain AAQM_RS04960 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS04960 PF00072 Response regulator receiver domain AAQM_RS04965 PF03707 Bacterial signalling protein N terminal repeat AAQM_RS04965 PF00563 EAL domain AAQM_RS04965 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS04990 PF10415 Fumarase C C-terminus AAQM_RS04990 PF00206 Lyase AAQM_RS05000 PF01545 Cation efflux family AAQM_RS05015 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AAQM_RS05025 PF05099 Tellurite resistance protein TerB AAQM_RS05025 PF00226 DnaJ domain AAQM_RS05035 PF00270 DEAD/DEAH box helicase AAQM_RS05035 PF08482 ATP-dependent helicase C-terminal AAQM_RS05035 PF00271 Helicase conserved C-terminal domain AAQM_RS05035 PF04408 Helicase associated domain (HA2) AAQM_RS05050 PF13286 Phosphohydrolase-associated domain AAQM_RS05050 PF01966 HD domain AAQM_RS05070 PF01042 Endoribonuclease L-PSP AAQM_RS05095 PF00561 alpha/beta hydrolase fold AAQM_RS05100 PF17746 SfsA N-terminal OB domain AAQM_RS05100 PF03749 Sugar fermentation stimulation protein RE domain AAQM_RS05115 PF03062 MBOAT, membrane-bound O-acyltransferase family AAQM_RS05120 PF00849 RNA pseudouridylate synthase AAQM_RS05125 PF03449 Transcription elongation factor, N-terminal AAQM_RS05125 PF01272 Transcription elongation factor, GreA/GreB, C-term AAQM_RS05130 PF10672 S-adenosylmethionine-dependent methyltransferase AAQM_RS05130 PF17785 PUA-like domain AAQM_RS05135 PF07690 Major Facilitator Superfamily AAQM_RS05155 PF00106 short chain dehydrogenase AAQM_RS05160 PF02540 NAD synthase AAQM_RS05160 PF00117 Glutamine amidotransferase class-I AAQM_RS05160 PF00958 GMP synthase C terminal domain AAQM_RS05205 PF00069 Protein kinase domain AAQM_RS05205 PF03793 PASTA domain AAQM_RS05210 PF07669 Eco57I restriction-modification methylase AAQM_RS05220 PF01595 Cyclin M transmembrane N-terminal domain AAQM_RS05220 PF03471 Transporter associated domain AAQM_RS05220 PF00571 CBS domain AAQM_RS05225 PF01471 Putative peptidoglycan binding domain AAQM_RS05225 PF03734 L,D-transpeptidase catalytic domain AAQM_RS05230 PF01594 AI-2E family transporter AAQM_RS05245 PF00571 CBS domain AAQM_RS05245 PF03471 Transporter associated domain AAQM_RS05245 PF01595 Cyclin M transmembrane N-terminal domain AAQM_RS05260 PF17760 UvrA interaction domain AAQM_RS05260 PF17755 UvrA DNA-binding domain AAQM_RS05270 PF00440 Bacterial regulatory proteins, tetR family AAQM_RS05270 PF17932 Tetracyclin repressor-like, C-terminal domain AAQM_RS05285 PF00271 Helicase conserved C-terminal domain AAQM_RS05285 PF00270 DEAD/DEAH box helicase AAQM_RS05295 PF06426 Serine acetyltransferase, N-terminal AAQM_RS05295 PF00132 Bacterial transferase hexapeptide (six repeats) AAQM_RS05300 PF17944 Arginine decarboxylase C-terminal helical extension AAQM_RS05300 PF17810 Arginine decarboxylase helical bundle domain AAQM_RS05300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AAQM_RS05305 PF13393 Histidyl-tRNA synthetase AAQM_RS05305 PF03129 Anticodon binding domain AAQM_RS05310 PF02223 Thymidylate kinase AAQM_RS05315 PF01467 Cytidylyltransferase-like AAQM_RS05320 PF02441 Flavoprotein AAQM_RS05330 PF01281 Ribosomal protein L9, N-terminal domain AAQM_RS05330 PF03948 Ribosomal protein L9, C-terminal domain AAQM_RS05335 PF00227 Proteasome subunit AAQM_RS05340 PF07724 AAA domain (Cdc48 subfamily) AAQM_RS05340 PF10431 C-terminal, D2-small domain, of ClpB protein AAQM_RS05350 PF01026 TatD related DNase AAQM_RS05360 PF05036 Sporulation related domain AAQM_RS05360 PF03330 Lytic transglycolase AAQM_RS05365 PF00475 Imidazoleglycerol-phosphate dehydratase AAQM_RS05385 PF01926 50S ribosome-binding GTPase AAQM_RS05390 PF00583 Acetyltransferase (GNAT) family AAQM_RS05395 PF00155 Aminotransferase class I and II AAQM_RS05395 PF00392 Bacterial regulatory proteins, gntR family AAQM_RS05400 PF01243 Pyridoxamine 5'-phosphate oxidase AAQM_RS05410 PF00873 AcrB/AcrD/AcrF family AAQM_RS05415 PF00873 AcrB/AcrD/AcrF family AAQM_RS05420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AAQM_RS05420 PF00529 HlyD membrane-fusion protein of T1SS AAQM_RS05430 PF00813 FliP family AAQM_RS05435 PF05223 NTF2-like N-terminal transpeptidase domain AAQM_RS05435 PF03717 Penicillin-binding Protein dimerisation domain AAQM_RS05435 PF00905 Penicillin binding protein transpeptidase domain AAQM_RS05460 PF05199 GMC oxidoreductase AAQM_RS05460 PF00732 GMC oxidoreductase AAQM_RS05485 PF02491 SHS2 domain inserted in FTSA AAQM_RS05490 PF12327 FtsZ family, C-terminal domain AAQM_RS05490 PF00091 Tubulin/FtsZ family, GTPase domain AAQM_RS05505 PF01218 Coproporphyrinogen III oxidase AAQM_RS05515 PF00561 alpha/beta hydrolase fold AAQM_RS05520 PF02609 Exonuclease VII small subunit AAQM_RS05525 PF00488 MutS domain V AAQM_RS05525 PF01713 Smr domain AAQM_RS05545 PF01546 Peptidase family M20/M25/M40 AAQM_RS05545 PF07687 Peptidase dimerisation domain AAQM_RS05555 PF00005 ABC transporter AAQM_RS05570 PF00800 Prephenate dehydratase AAQM_RS05570 PF01817 Chorismate mutase type II AAQM_RS05595 PF01381 Helix-turn-helix AAQM_RS05610 PF03831 PhnA domain AAQM_RS05610 PF08274 PhnA Zinc-Ribbon AAQM_RS05645 PF01161 Phosphatidylethanolamine-binding protein AAQM_RS05655 PF02203 Tar ligand binding domain homologue AAQM_RS05655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS05655 PF00672 HAMP domain AAQM_RS05660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS05660 PF08447 PAS fold AAQM_RS05660 PF08448 PAS fold AAQM_RS05670 PF02895 Signal transducing histidine kinase, homodimeric domain AAQM_RS05670 PF09078 CheY binding AAQM_RS05670 PF01584 CheW-like domain AAQM_RS05670 PF01627 Hpt domain AAQM_RS05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS05675 PF00196 Bacterial regulatory proteins, luxR family AAQM_RS05675 PF00072 Response regulator receiver domain AAQM_RS05685 PF01593 Flavin containing amine oxidoreductase AAQM_RS05690 PF03109 ABC1 family AAQM_RS05700 PF11849 Domain of unknown function (DUF3369) AAQM_RS05710 PF08212 Lipocalin-like domain AAQM_RS05725 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AAQM_RS05740 PF08495 FIST N domain AAQM_RS05740 PF00563 EAL domain AAQM_RS05740 PF10442 FIST C domain AAQM_RS05740 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS05760 PF01593 Flavin containing amine oxidoreductase AAQM_RS05765 PF08212 Lipocalin-like domain AAQM_RS05775 PF00106 short chain dehydrogenase AAQM_RS05785 PF00005 ABC transporter AAQM_RS05785 PF12848 ABC transporter AAQM_RS05790 PF03061 Thioesterase superfamily AAQM_RS05795 PF11849 Domain of unknown function (DUF3369) AAQM_RS05800 PF00672 HAMP domain AAQM_RS05800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS05800 PF02203 Tar ligand binding domain homologue AAQM_RS05805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS05805 PF08447 PAS fold AAQM_RS05810 PF03120 NAD-dependent DNA ligase OB-fold domain AAQM_RS05810 PF01653 NAD-dependent DNA ligase adenylation domain AAQM_RS05810 PF00533 BRCA1 C Terminus (BRCT) domain AAQM_RS05810 PF12826 Helix-hairpin-helix motif AAQM_RS05830 PF01638 HxlR-like helix-turn-helix AAQM_RS05835 PF02525 Flavodoxin-like fold AAQM_RS05845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AAQM_RS05850 PF00881 Nitroreductase family AAQM_RS05865 PF00989 PAS fold AAQM_RS05865 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS05865 PF08447 PAS fold AAQM_RS05865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS05875 PF00216 Bacterial DNA-binding protein AAQM_RS05885 PF01795 MraW methylase family AAQM_RS05895 PF00873 AcrB/AcrD/AcrF family AAQM_RS05915 PF00501 AMP-binding enzyme AAQM_RS05915 PF13193 AMP-binding enzyme C-terminal domain AAQM_RS05920 PF13941 MutL protein AAQM_RS05925 PF06368 Methylaspartate mutase E chain (MutE) AAQM_RS05930 PF02310 B12 binding domain AAQM_RS05940 PF00056 lactate/malate dehydrogenase, NAD binding domain AAQM_RS05940 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AAQM_RS05945 PF03971 Monomeric isocitrate dehydrogenase AAQM_RS05960 PF02687 FtsX-like permease family AAQM_RS05960 PF12704 MacB-like periplasmic core domain AAQM_RS05965 PF02810 SEC-C motif AAQM_RS05965 PF07516 SecA Wing and Scaffold domain AAQM_RS05965 PF01043 SecA preprotein cross-linking domain AAQM_RS05965 PF07517 SecA DEAD-like domain AAQM_RS05965 PF00271 Helicase conserved C-terminal domain AAQM_RS05970 PF03548 Outer membrane lipoprotein carrier protein LolA AAQM_RS05980 PF01966 HD domain AAQM_RS05985 PF13407 Periplasmic binding protein domain AAQM_RS05990 PF00497 Bacterial extracellular solute-binding proteins, family 3 AAQM_RS05990 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS05990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS05995 PF03738 Glutathionylspermidine synthase preATP-grasp AAQM_RS06005 PF01022 Bacterial regulatory protein, arsR family AAQM_RS06010 PF02040 Arsenical pump membrane protein AAQM_RS06020 PF02417 Chromate transporter AAQM_RS06035 PF00672 HAMP domain AAQM_RS06035 PF02203 Tar ligand binding domain homologue AAQM_RS06035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS06045 PF03061 Thioesterase superfamily AAQM_RS06055 PF01435 Peptidase family M48 AAQM_RS06055 PF16491 CAAX prenyl protease N-terminal, five membrane helices AAQM_RS06060 PF02646 RmuC family AAQM_RS06075 PF03453 MoeA N-terminal region (domain I and II) AAQM_RS06075 PF00994 Probable molybdopterin binding domain AAQM_RS06075 PF03454 MoeA C-terminal region (domain IV) AAQM_RS06085 PF01171 PP-loop family AAQM_RS06095 PF00085 Thioredoxin AAQM_RS06110 PF00563 EAL domain AAQM_RS06110 PF01590 GAF domain AAQM_RS06110 PF00360 Phytochrome region AAQM_RS06110 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS06120 PF02541 Ppx/GppA phosphatase family AAQM_RS06130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AAQM_RS06130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAQM_RS06130 PF00205 Thiamine pyrophosphate enzyme, central domain AAQM_RS06135 PF10369 Small subunit of acetolactate synthase AAQM_RS06140 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AAQM_RS06140 PF00132 Bacterial transferase hexapeptide (six repeats) AAQM_RS06145 PF17854 FtsK alpha domain AAQM_RS06145 PF09397 Ftsk gamma domain AAQM_RS06145 PF01580 FtsK/SpoIIIE family AAQM_RS06150 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AAQM_RS06150 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AAQM_RS06155 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AAQM_RS06155 PF01926 50S ribosome-binding GTPase AAQM_RS06160 PF01740 STAS domain AAQM_RS06160 PF00916 Sulfate permease family AAQM_RS06170 PF02844 Phosphoribosylglycinamide synthetase, N domain AAQM_RS06170 PF02843 Phosphoribosylglycinamide synthetase, C domain AAQM_RS06170 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AAQM_RS06180 PF03968 OstA-like protein AAQM_RS06180 PF04453 LPS transport system D AAQM_RS06190 PF00575 S1 RNA binding domain AAQM_RS06190 PF03725 3' exoribonuclease family, domain 2 AAQM_RS06190 PF01138 3' exoribonuclease family, domain 1 AAQM_RS06190 PF00013 KH domain AAQM_RS06190 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AAQM_RS06195 PF00072 Response regulator receiver domain AAQM_RS06200 PF09078 CheY binding AAQM_RS06200 PF01627 Hpt domain AAQM_RS06200 PF02895 Signal transducing histidine kinase, homodimeric domain AAQM_RS06200 PF01584 CheW-like domain AAQM_RS06200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS06205 PF03705 CheR methyltransferase, all-alpha domain AAQM_RS06205 PF01739 CheR methyltransferase, SAM binding domain AAQM_RS06210 PF03975 CheD chemotactic sensory transduction AAQM_RS06215 PF00072 Response regulator receiver domain AAQM_RS06215 PF01339 CheB methylesterase AAQM_RS06235 PF18644 Phage integrase SAM-like domain AAQM_RS06235 PF00589 Phage integrase family AAQM_RS06285 PF00271 Helicase conserved C-terminal domain AAQM_RS06285 PF00570 HRDC domain AAQM_RS06285 PF00270 DEAD/DEAH box helicase AAQM_RS06285 PF16124 RecQ zinc-binding AAQM_RS06285 PF09382 RQC domain AAQM_RS06290 PF00589 Phage integrase family AAQM_RS06290 PF18644 Phage integrase SAM-like domain AAQM_RS06295 PF08402 TOBE domain AAQM_RS06295 PF00005 ABC transporter AAQM_RS06300 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_RS06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AAQM_RS06315 PF03459 TOBE domain AAQM_RS06335 PF01432 Peptidase family M3 AAQM_RS06340 PF05175 Methyltransferase small domain AAQM_RS06340 PF17827 PrmC N-terminal domain AAQM_RS06345 PF06969 HemN C-terminal domain AAQM_RS06345 PF04055 Radical SAM superfamily AAQM_RS06350 PF00293 NUDIX domain AAQM_RS06355 PF00696 Amino acid kinase family AAQM_RS06355 PF13840 ACT domain AAQM_RS06355 PF01842 ACT domain AAQM_RS06370 PF00809 Pterin binding enzyme AAQM_RS06375 PF01842 ACT domain AAQM_RS06375 PF02153 Prephenate dehydrogenase AAQM_RS06380 PF07244 Surface antigen variable number repeat AAQM_RS06380 PF01103 Surface antigen AAQM_RS06385 PF04055 Radical SAM superfamily AAQM_RS06390 PF05193 Peptidase M16 inactive domain AAQM_RS06395 PF00749 tRNA synthetases class I (E and Q), catalytic domain AAQM_RS06400 PF02325 YGGT family AAQM_RS06425 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AAQM_RS06435 PF01588 Putative tRNA binding domain AAQM_RS06435 PF09334 tRNA synthetases class I (M) AAQM_RS06435 PF00133 tRNA synthetases class I (I, L, M and V) AAQM_RS06455 PF08502 LeuA allosteric (dimerisation) domain AAQM_RS06455 PF00682 HMGL-like AAQM_RS06460 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AAQM_RS06465 PF01293 Phosphoenolpyruvate carboxykinase AAQM_RS06475 PF00925 GTP cyclohydrolase II AAQM_RS06475 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AAQM_RS06600 PF00588 SpoU rRNA Methylase family AAQM_RS06605 PF00551 Formyl transferase AAQM_RS06605 PF01842 ACT domain AAQM_RS06610 PF03949 Malic enzyme, NAD binding domain AAQM_RS06610 PF00390 Malic enzyme, N-terminal domain AAQM_RS06610 PF01515 Phosphate acetyl/butaryl transferase AAQM_RS06620 PF01209 ubiE/COQ5 methyltransferase family AAQM_RS06625 PF08501 Shikimate dehydrogenase substrate binding domain AAQM_RS06655 PF18766 SWI2/SNF2 ATPase AAQM_RS06655 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AAQM_RS06655 PF12008 Type I restriction and modification enzyme - subunit R C terminal AAQM_RS06685 PF12161 HsdM N-terminal domain AAQM_RS06685 PF02384 N-6 DNA Methylase AAQM_RS06690 PF14659 Phage integrase, N-terminal SAM-like domain AAQM_RS06690 PF00589 Phage integrase family AAQM_RS06710 PF00248 Aldo/keto reductase family AAQM_RS06735 PF01032 FecCD transport family AAQM_RS06740 PF00005 ABC transporter AAQM_RS06750 PF00593 TonB dependent receptor AAQM_RS06750 PF07715 TonB-dependent Receptor Plug Domain AAQM_RS06775 PF13419 Haloacid dehalogenase-like hydrolase AAQM_RS06785 PF00849 RNA pseudouridylate synthase AAQM_RS06785 PF01479 S4 domain AAQM_RS06790 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AAQM_RS06795 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS06795 PF17158 Membrane-associated sensor, integral membrane domain AAQM_RS06810 PF05971 RNA methyltransferase AAQM_RS06815 PF03737 Aldolase/RraA AAQM_RS06835 PF01381 Helix-turn-helix AAQM_RS06850 PF13476 AAA domain AAQM_RS06865 PF02472 Biopolymer transport protein ExbD/TolR AAQM_RS06870 PF01618 MotA/TolQ/ExbB proton channel family AAQM_RS06880 PF00593 TonB dependent receptor AAQM_RS06880 PF07715 TonB-dependent Receptor Plug Domain AAQM_RS06910 PF01145 SPFH domain / Band 7 family AAQM_RS06910 PF16200 C-terminal region of band_7 AAQM_RS06920 PF00072 Response regulator receiver domain AAQM_RS06920 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS06935 PF02092 Glycyl-tRNA synthetase beta subunit AAQM_RS06955 PF02527 rRNA small subunit methyltransferase G AAQM_RS06960 PF00925 GTP cyclohydrolase II AAQM_RS06965 PF00490 Delta-aminolevulinic acid dehydratase AAQM_RS06970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS06970 PF08447 PAS fold AAQM_RS06970 PF08448 PAS fold AAQM_RS06975 PF00072 Response regulator receiver domain AAQM_RS06975 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS06990 PF00317 Ribonucleotide reductase, all-alpha domain AAQM_RS06990 PF02867 Ribonucleotide reductase, barrel domain AAQM_RS06990 PF03477 ATP cone domain AAQM_RS06995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AAQM_RS06995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AAQM_RS07000 PF06969 HemN C-terminal domain AAQM_RS07000 PF04055 Radical SAM superfamily AAQM_RS07010 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AAQM_RS07015 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AAQM_RS07020 PF02540 NAD synthase AAQM_RS07040 PF05099 Tellurite resistance protein TerB AAQM_RS07040 PF00226 DnaJ domain AAQM_RS07050 PF00902 Sec-independent protein translocase protein (TatC) AAQM_RS07055 PF02547 Queuosine biosynthesis protein AAQM_RS07085 PF02086 D12 class N6 adenine-specific DNA methyltransferase AAQM_RS07285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AAQM_RS07285 PF00005 ABC transporter AAQM_RS07340 PF03737 Aldolase/RraA AAQM_RS07350 PF02665 Nitrate reductase gamma subunit AAQM_RS07350 PF13183 4Fe-4S dicluster domain AAQM_RS07350 PF02754 Cysteine-rich domain AAQM_RS07355 PF01790 Prolipoprotein diacylglyceryl transferase AAQM_RS07375 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AAQM_RS07375 PF01367 5'-3' exonuclease, C-terminal SAM fold AAQM_RS07375 PF00476 DNA polymerase family A AAQM_RS07380 PF02348 Cytidylyltransferase AAQM_RS07385 PF00563 EAL domain AAQM_RS07385 PF08495 FIST N domain AAQM_RS07385 PF10442 FIST C domain AAQM_RS07385 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS07390 PF08448 PAS fold AAQM_RS07390 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS07395 PF00005 ABC transporter AAQM_RS07395 PF12399 Branched-chain amino acid ATP-binding cassette transporter AAQM_RS07400 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAQM_RS07405 PF00591 Glycosyl transferase family, a/b domain AAQM_RS07405 PF02885 Glycosyl transferase family, helical bundle domain AAQM_RS07415 PF00593 TonB dependent receptor AAQM_RS07415 PF07715 TonB-dependent Receptor Plug Domain AAQM_RS07420 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS07420 PF00072 Response regulator receiver domain AAQM_RS07425 PF00764 Arginosuccinate synthase AAQM_RS07430 PF00132 Bacterial transferase hexapeptide (six repeats) AAQM_RS07440 PF08448 PAS fold AAQM_RS07440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS07440 PF08447 PAS fold AAQM_RS07450 PF02132 RecR protein AAQM_RS07450 PF13662 Toprim domain AAQM_RS07455 PF01556 DnaJ C terminal domain AAQM_RS07455 PF00684 DnaJ central domain AAQM_RS07455 PF00226 DnaJ domain AAQM_RS07460 PF00291 Pyridoxal-phosphate dependent enzyme AAQM_RS07480 PF00753 Metallo-beta-lactamase superfamily AAQM_RS07485 PF08447 PAS fold AAQM_RS07485 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS07485 PF08448 PAS fold AAQM_RS07485 PF00563 EAL domain AAQM_RS07490 PF00563 EAL domain AAQM_RS07490 PF00360 Phytochrome region AAQM_RS07490 PF01590 GAF domain AAQM_RS07490 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS07495 PF08003 Protein of unknown function (DUF1698) AAQM_RS07500 PF05140 ResB-like family AAQM_RS07500 PF01578 Cytochrome C assembly protein AAQM_RS07505 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS07505 PF00072 Response regulator receiver domain AAQM_RS07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS07510 PF08448 PAS fold AAQM_RS07510 PF08447 PAS fold AAQM_RS07515 PF07687 Peptidase dimerisation domain AAQM_RS07515 PF01546 Peptidase family M20/M25/M40 AAQM_RS07525 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AAQM_RS07525 PF01266 FAD dependent oxidoreductase AAQM_RS07535 PF00072 Response regulator receiver domain AAQM_RS07545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS07545 PF08448 PAS fold AAQM_RS07545 PF08447 PAS fold AAQM_RS07550 PF00226 DnaJ domain AAQM_RS07550 PF01556 DnaJ C terminal domain AAQM_RS07555 PF13411 MerR HTH family regulatory protein AAQM_RS07570 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AAQM_RS07570 PF02142 MGS-like domain AAQM_RS07570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AAQM_RS07575 PF01810 LysE type translocator AAQM_RS07580 PF00899 ThiF family AAQM_RS07585 PF00563 EAL domain AAQM_RS07585 PF12792 CSS motif domain associated with EAL AAQM_RS07590 PF01522 Polysaccharide deacetylase AAQM_RS07595 PF00939 Sodium:sulfate symporter transmembrane region AAQM_RS07600 PF00994 Probable molybdopterin binding domain AAQM_RS07610 PF01434 Peptidase family M41 AAQM_RS07610 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_RS07610 PF17862 AAA+ lid domain AAQM_RS07615 PF04055 Radical SAM superfamily AAQM_RS07615 PF00919 Uncharacterized protein family UPF0004 AAQM_RS07625 PF01761 3-dehydroquinate synthase AAQM_RS07630 PF00270 DEAD/DEAH box helicase AAQM_RS07630 PF00271 Helicase conserved C-terminal domain AAQM_RS07635 PF00762 Ferrochelatase AAQM_RS07645 PF04397 LytTr DNA-binding domain AAQM_RS07645 PF00072 Response regulator receiver domain AAQM_RS07650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS07650 PF06580 Histidine kinase AAQM_RS07650 PF07694 5TMR of 5TMR-LYT AAQM_RS07680 PF00700 Bacterial flagellin C-terminal helical region AAQM_RS07680 PF07196 Flagellin hook IN motif AAQM_RS07680 PF00669 Bacterial flagellin N-terminal helical region AAQM_RS07680 PF07196 Flagellin hook IN motif AAQM_RS07680 PF00669 Bacterial flagellin N-terminal helical region AAQM_RS07680 PF00700 Bacterial flagellin C-terminal helical region AAQM_RS07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS07700 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS07700 PF00072 Response regulator receiver domain AAQM_RS07720 PF00005 ABC transporter AAQM_RS07720 PF00664 ABC transporter transmembrane region AAQM_RS07725 PF01594 AI-2E family transporter AAQM_RS07735 PF03707 Bacterial signalling protein N terminal repeat AAQM_RS07735 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS07735 PF00563 EAL domain AAQM_RS07740 PF00085 Thioredoxin AAQM_RS07745 PF00578 AhpC/TSA family AAQM_RS07745 PF10417 C-terminal domain of 1-Cys peroxiredoxin AAQM_RS07755 PF00072 Response regulator receiver domain AAQM_RS07755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS07755 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AAQM_RS07755 PF01627 Hpt domain AAQM_RS07755 PF00672 HAMP domain AAQM_RS07755 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS07765 PF01915 Glycosyl hydrolase family 3 C-terminal domain AAQM_RS07765 PF00933 Glycosyl hydrolase family 3 N terminal domain AAQM_RS07785 PF02652 L-lactate permease AAQM_RS07790 PF00684 DnaJ central domain AAQM_RS07790 PF00226 DnaJ domain AAQM_RS07790 PF01556 DnaJ C terminal domain AAQM_RS07820 PF00072 Response regulator receiver domain AAQM_RS07820 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS07835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AAQM_RS07840 PF00478 IMP dehydrogenase / GMP reductase domain AAQM_RS07840 PF00571 CBS domain AAQM_RS07845 PF01425 Amidase AAQM_RS07850 PF01196 Ribosomal protein L17 AAQM_RS07855 PF01000 RNA polymerase Rpb3/RpoA insert domain AAQM_RS07855 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AAQM_RS07855 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AAQM_RS07860 PF00163 Ribosomal protein S4/S9 N-terminal domain AAQM_RS07860 PF01479 S4 domain AAQM_RS07865 PF00411 Ribosomal protein S11 AAQM_RS07870 PF00416 Ribosomal protein S13/S18 AAQM_RS07875 PF00444 Ribosomal protein L36 AAQM_RS07890 PF00180 Isocitrate/isopropylmalate dehydrogenase AAQM_RS07895 PF00694 Aconitase C-terminal domain AAQM_RS07900 PF00140 Sigma-70 factor, region 1.2 AAQM_RS07900 PF04545 Sigma-70, region 4 AAQM_RS07900 PF04539 Sigma-70 region 3 AAQM_RS07900 PF04542 Sigma-70 region 2 AAQM_RS07920 PF06865 Pyrimidine/purine nucleoside phosphorylase AAQM_RS07925 PF00202 Aminotransferase class-III AAQM_RS07945 PF01098 Cell cycle protein AAQM_RS07950 PF01479 S4 domain AAQM_RS07950 PF00849 RNA pseudouridylate synthase AAQM_RS07955 PF00128 Alpha amylase, catalytic domain AAQM_RS07955 PF02903 Alpha amylase, N-terminal ig-like domain AAQM_RS07960 PF02390 Putative methyltransferase AAQM_RS07965 PF00005 ABC transporter AAQM_RS07980 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AAQM_RS07990 PF16326 ABC transporter C-terminal domain AAQM_RS07990 PF12848 ABC transporter AAQM_RS07990 PF00005 ABC transporter AAQM_RS08020 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AAQM_RS08020 PF14602 Hexapeptide repeat of succinyl-transferase AAQM_RS08025 PF00270 DEAD/DEAH box helicase AAQM_RS08025 PF00271 Helicase conserved C-terminal domain AAQM_RS08025 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AAQM_RS08025 PF18074 Primosomal protein N C-terminal domain AAQM_RS08050 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAQM_RS08055 PF02769 AIR synthase related protein, C-terminal domain AAQM_RS08055 PF00586 AIR synthase related protein, N-terminal domain AAQM_RS08065 PF07728 AAA domain (dynein-related subfamily) AAQM_RS08065 PF12102 Domain of unknown function (DUF3578) AAQM_RS08075 PF01924 Hydrogenase formation hypA family AAQM_RS08080 PF01455 HupF/HypC family AAQM_RS08085 PF02492 CobW/HypB/UreG, nucleotide-binding domain AAQM_RS08090 PF00005 ABC transporter AAQM_RS08105 PF01891 Cobalt uptake substrate-specific transmembrane region AAQM_RS08115 PF02203 Tar ligand binding domain homologue AAQM_RS08115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS08115 PF00672 HAMP domain AAQM_RS08140 PF12823 Domain of unknown function (DUF3817) AAQM_RS08150 PF02568 Thiamine biosynthesis protein (ThiI) AAQM_RS08150 PF02926 THUMP domain AAQM_RS08165 PF02080 TrkA-C domain AAQM_RS08165 PF00999 Sodium/hydrogen exchanger family AAQM_RS08165 PF03471 Transporter associated domain AAQM_RS08175 PF07556 Protein of unknown function (DUF1538) AAQM_RS08180 PF00571 CBS domain AAQM_RS08200 PF07503 HypF finger AAQM_RS08200 PF00708 Acylphosphatase AAQM_RS08200 PF17788 HypF Kae1-like domain AAQM_RS08200 PF01300 Telomere recombination AAQM_RS08210 PF01750 Hydrogenase maturation protease AAQM_RS08215 PF01292 Prokaryotic cytochrome b561 AAQM_RS08220 PF00374 Nickel-dependent hydrogenase AAQM_RS08225 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AAQM_RS08225 PF10518 TAT (twin-arginine translocation) pathway signal sequence AAQM_RS08225 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AAQM_RS08230 PF00374 Nickel-dependent hydrogenase AAQM_RS08235 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AAQM_RS08235 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AAQM_RS08245 PF11791 Aconitate B N-terminal domain AAQM_RS08245 PF06434 Aconitate hydratase 2 N-terminus AAQM_RS08245 PF00330 Aconitase family (aconitate hydratase) AAQM_RS08255 PF00360 Phytochrome region AAQM_RS08255 PF01590 GAF domain AAQM_RS08255 PF00563 EAL domain AAQM_RS08255 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS08265 PF00501 AMP-binding enzyme AAQM_RS08270 PF02803 Thiolase, C-terminal domain AAQM_RS08270 PF00108 Thiolase, N-terminal domain AAQM_RS08275 PF00378 Enoyl-CoA hydratase/isomerase AAQM_RS08275 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AAQM_RS08275 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AAQM_RS08280 PF02770 Acyl-CoA dehydrogenase, middle domain AAQM_RS08280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AAQM_RS08280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AAQM_RS08280 PF09317 Domain of unknown function (DUF1974) AAQM_RS08295 PF03707 Bacterial signalling protein N terminal repeat AAQM_RS08295 PF00563 EAL domain AAQM_RS08295 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS08315 PF01709 Transcriptional regulator AAQM_RS08320 PF01551 Peptidase family M23 AAQM_RS08325 PF04333 MlaA lipoprotein AAQM_RS08340 PF03641 Possible lysine decarboxylase AAQM_RS08345 PF13419 Haloacid dehalogenase-like hydrolase AAQM_RS08370 PF02600 Disulfide bond formation protein DsbB AAQM_RS08390 PF02028 BCCT, betaine/carnitine/choline family transporter AAQM_RS08395 PF07690 Major Facilitator Superfamily AAQM_RS08415 PF00464 Serine hydroxymethyltransferase AAQM_RS08420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AAQM_RS08420 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AAQM_RS08420 PF12833 Helix-turn-helix domain AAQM_RS08420 PF02805 Metal binding domain of Ada AAQM_RS08435 PF00464 Serine hydroxymethyltransferase AAQM_RS08440 PF00202 Aminotransferase class-III AAQM_RS08445 PF03473 MOSC domain AAQM_RS08455 PF01263 Aldose 1-epimerase AAQM_RS08460 PF00905 Penicillin binding protein transpeptidase domain AAQM_RS08465 PF00271 Helicase conserved C-terminal domain AAQM_RS08465 PF00270 DEAD/DEAH box helicase AAQM_RS08470 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AAQM_RS08470 PF18381 YcaO cyclodehydratase C-terminal domain AAQM_RS08490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS08490 PF00672 HAMP domain AAQM_RS08490 PF02203 Tar ligand binding domain homologue AAQM_RS08500 PF00075 RNase H AAQM_RS08505 PF00682 HMGL-like AAQM_RS08505 PF07836 DmpG-like communication domain AAQM_RS08515 PF11798 IMS family HHH motif AAQM_RS08515 PF11799 impB/mucB/samB family C-terminal domain AAQM_RS08515 PF00817 impB/mucB/samB family AAQM_RS08525 PF10518 TAT (twin-arginine translocation) pathway signal sequence AAQM_RS08525 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding AAQM_RS08525 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_RS08535 PF00266 Aminotransferase class-V AAQM_RS08545 PF02634 FdhD/NarQ family AAQM_RS08555 PF13247 4Fe-4S dicluster domain AAQM_RS08570 PF02613 Nitrate reductase delta subunit AAQM_RS08585 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS08585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS08590 PF00072 Response regulator receiver domain AAQM_RS08610 PF01841 Transglutaminase-like superfamily AAQM_RS08615 PF02769 AIR synthase related protein, C-terminal domain AAQM_RS08615 PF00586 AIR synthase related protein, N-terminal domain AAQM_RS08625 PF03841 L-seryl-tRNA selenium transferase AAQM_RS08630 PF09107 Elongation factor SelB, winged helix AAQM_RS08630 PF00009 Elongation factor Tu GTP binding domain AAQM_RS08630 PF03144 Elongation factor Tu domain 2 AAQM_RS08630 PF09105 Elongation factor SelB, winged helix AAQM_RS08630 PF09106 Elongation factor SelB, winged helix AAQM_RS08635 PF08447 PAS fold AAQM_RS08635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS08635 PF08448 PAS fold AAQM_RS08640 PF00580 UvrD/REP helicase N-terminal domain AAQM_RS08640 PF13361 UvrD-like helicase C-terminal domain AAQM_RS08660 PF00072 Response regulator receiver domain AAQM_RS08660 PF00158 Sigma-54 interaction domain AAQM_RS08665 PF00072 Response regulator receiver domain AAQM_RS08670 PF01627 Hpt domain AAQM_RS08670 PF00072 Response regulator receiver domain AAQM_RS08670 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS08670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AAQM_RS08670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS08670 PF00672 HAMP domain AAQM_RS08675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AAQM_RS08675 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS08675 PF00072 Response regulator receiver domain AAQM_RS08675 PF00672 HAMP domain AAQM_RS08675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS08675 PF01627 Hpt domain AAQM_RS08680 PF08447 PAS fold AAQM_RS08680 PF08448 PAS fold AAQM_RS08680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS08685 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS08685 PF09308 LuxQ, periplasmic AAQM_RS08685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS08685 PF00072 Response regulator receiver domain AAQM_RS08715 PF01475 Ferric uptake regulator family AAQM_RS08760 PF00005 ABC transporter AAQM_RS08760 PF02687 FtsX-like permease family AAQM_RS08760 PF12704 MacB-like periplasmic core domain AAQM_RS08765 PF12704 MacB-like periplasmic core domain AAQM_RS08765 PF02687 FtsX-like permease family AAQM_RS08765 PF00005 ABC transporter AAQM_RS08780 PF01618 MotA/TolQ/ExbB proton channel family AAQM_RS08785 PF02472 Biopolymer transport protein ExbD/TolR AAQM_RS08795 PF00883 Cytosol aminopeptidase family, catalytic domain AAQM_RS08795 PF02789 Cytosol aminopeptidase family, N-terminal domain AAQM_RS08805 PF00291 Pyridoxal-phosphate dependent enzyme AAQM_RS08810 PF00156 Phosphoribosyl transferase domain AAQM_RS08815 PF01068 ATP dependent DNA ligase domain AAQM_RS08815 PF14743 DNA ligase OB-like domain AAQM_RS08820 PF08334 Type II secretion system (T2SS), protein G AAQM_RS08820 PF07963 Prokaryotic N-terminal methylation motif AAQM_RS08825 PF03796 DnaB-like helicase C terminal domain AAQM_RS08825 PF00772 DnaB-like helicase N terminal domain AAQM_RS08830 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS08830 PF17151 Periplasmic sensor domain AAQM_RS08835 PF04551 GcpE protein AAQM_RS08840 PF08448 PAS fold AAQM_RS08840 PF08447 PAS fold AAQM_RS08840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS08850 PF01336 OB-fold nucleic acid binding domain AAQM_RS08850 PF00152 tRNA synthetases class II (D, K and N) AAQM_RS08855 PF00464 Serine hydroxymethyltransferase AAQM_RS08865 PF04715 Anthranilate synthase component I, N terminal region AAQM_RS08865 PF00425 chorismate binding enzyme AAQM_RS08870 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AAQM_RS08875 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AAQM_RS08885 PF00696 Amino acid kinase family AAQM_RS08890 PF01192 RNA polymerase Rpb6 AAQM_RS08895 PF02824 TGS domain AAQM_RS08895 PF04607 Region found in RelA / SpoT proteins AAQM_RS08895 PF13291 ACT domain AAQM_RS08900 PF01479 S4 domain AAQM_RS08900 PF00579 tRNA synthetases class I (W and Y) AAQM_RS08910 PF01520 N-acetylmuramoyl-L-alanine amidase AAQM_RS08925 PF01195 Peptidyl-tRNA hydrolase AAQM_RS08930 PF14693 Ribosomal protein TL5, C-terminal domain AAQM_RS08930 PF01386 Ribosomal L25p family AAQM_RS08935 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AAQM_RS08935 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AAQM_RS08940 PF10502 Signal peptidase, peptidase S26 AAQM_RS08945 PF02502 Ribose/Galactose Isomerase AAQM_RS08975 PF10576 Iron-sulfur binding domain of endonuclease III AAQM_RS08975 PF00730 HhH-GPD superfamily base excision DNA repair protein AAQM_RS08975 PF00633 Helix-hairpin-helix motif AAQM_RS08980 PF02151 UvrB/uvrC motif AAQM_RS08980 PF12344 Ultra-violet resistance protein B AAQM_RS08980 PF17757 UvrB interaction domain AAQM_RS08980 PF00271 Helicase conserved C-terminal domain AAQM_RS08980 PF04851 Type III restriction enzyme, res subunit AAQM_RS08995 PF02774 Semialdehyde dehydrogenase, dimerisation domain AAQM_RS08995 PF01118 Semialdehyde dehydrogenase, NAD binding domain AAQM_RS09000 PF03449 Transcription elongation factor, N-terminal AAQM_RS09000 PF01272 Transcription elongation factor, GreA/GreB, C-term AAQM_RS09005 PF00899 ThiF family AAQM_RS09010 PF01584 CheW-like domain AAQM_RS09010 PF00072 Response regulator receiver domain AAQM_RS09015 PF00206 Lyase AAQM_RS09015 PF14698 Argininosuccinate lyase C-terminal AAQM_RS09035 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS09035 PF07694 5TMR of 5TMR-LYT AAQM_RS09040 PF01925 Sulfite exporter TauE/SafE AAQM_RS09045 PF00571 CBS domain AAQM_RS09045 PF01769 Divalent cation transporter AAQM_RS09045 PF03448 MgtE intracellular N domain AAQM_RS09055 PF01106 NifU-like domain AAQM_RS09055 PF04324 BFD-like [2Fe-2S] binding domain AAQM_RS09055 PF01592 NifU-like N terminal domain AAQM_RS09060 PF00266 Aminotransferase class-V AAQM_RS09065 PF01458 Uncharacterized protein family (UPF0051) AAQM_RS09070 PF00005 ABC transporter AAQM_RS09080 PF00266 Aminotransferase class-V AAQM_RS09085 PF02657 Fe-S metabolism associated domain AAQM_RS09095 PF00892 EamA-like transporter family AAQM_RS09100 PF00672 HAMP domain AAQM_RS09100 PF02203 Tar ligand binding domain homologue AAQM_RS09100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS09110 PF02785 Biotin carboxylase C-terminal domain AAQM_RS09110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AAQM_RS09110 PF00289 Biotin carboxylase, N-terminal domain AAQM_RS09115 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS09115 PF08448 PAS fold AAQM_RS09125 PF00893 Small Multidrug Resistance protein AAQM_RS09135 PF00873 AcrB/AcrD/AcrF family AAQM_RS09140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AAQM_RS09140 PF00529 HlyD membrane-fusion protein of T1SS AAQM_RS09150 PF00440 Bacterial regulatory proteins, tetR family AAQM_RS09150 PF17932 Tetracyclin repressor-like, C-terminal domain AAQM_RS09155 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AAQM_RS09160 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS09165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS09165 PF00672 HAMP domain AAQM_RS09165 PF02203 Tar ligand binding domain homologue AAQM_RS09170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS09170 PF08447 PAS fold AAQM_RS09180 PF01451 Low molecular weight phosphotyrosine protein phosphatase AAQM_RS09200 PF05362 Lon protease (S16) C-terminal proteolytic domain AAQM_RS09200 PF02190 ATP-dependent protease La (LON) substrate-binding domain AAQM_RS09200 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_RS09205 PF13525 Outer membrane lipoprotein AAQM_RS09210 PF14748 Pyrroline-5-carboxylate reductase dimerisation AAQM_RS09210 PF03807 NADP oxidoreductase coenzyme F420-dependent AAQM_RS09230 PF01725 Ham1 family AAQM_RS09235 PF07690 Major Facilitator Superfamily AAQM_RS09245 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS09250 PF01227 GTP cyclohydrolase I AAQM_RS09255 PF01544 CorA-like Mg2+ transporter protein AAQM_RS09260 PF00482 Type II secretion system (T2SS), protein F AAQM_RS09265 PF00437 Type II/IV secretion system protein AAQM_RS09280 PF01926 50S ribosome-binding GTPase AAQM_RS09280 PF07650 KH domain AAQM_RS09285 PF13335 Magnesium chelatase, subunit ChlI C-terminal AAQM_RS09285 PF01078 Magnesium chelatase, subunit ChlI AAQM_RS09295 PF01327 Polypeptide deformylase AAQM_RS09300 PF00574 Clp protease AAQM_RS09305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AAQM_RS09305 PF05698 Bacterial trigger factor protein (TF) C-terminus AAQM_RS09305 PF05697 Bacterial trigger factor protein (TF) AAQM_RS09310 PF13519 von Willebrand factor type A domain AAQM_RS09315 PF03976 Polyphosphate kinase 2 (PPK2) AAQM_RS09320 PF03976 Polyphosphate kinase 2 (PPK2) AAQM_RS09325 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AAQM_RS09330 PF00301 Rubredoxin AAQM_RS09335 PF03435 Saccharopine dehydrogenase NADP binding domain AAQM_RS09335 PF16653 Saccharopine dehydrogenase C-terminal domain AAQM_RS09345 PF13356 Arm DNA-binding domain AAQM_RS09345 PF00589 Phage integrase family AAQM_RS09410 PF04221 RelB antitoxin AAQM_RS09425 PF00589 Phage integrase family AAQM_RS09425 PF02899 Phage integrase, N-terminal SAM-like domain AAQM_RS09430 PF02661 Fic/DOC family AAQM_RS09430 PF17841 BID domain of Bartonella effector protein (Bep) AAQM_RS09435 PF07152 YaeQ protein AAQM_RS09455 PF01053 Cys/Met metabolism PLP-dependent enzyme AAQM_RS09460 PF01053 Cys/Met metabolism PLP-dependent enzyme AAQM_RS09475 PF00072 Response regulator receiver domain AAQM_RS09475 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS09485 PF03824 High-affinity nickel-transport protein AAQM_RS09500 PF13244 Domain of unknown function (DUF4040) AAQM_RS09500 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AAQM_RS09500 PF00361 Proton-conducting membrane transporter AAQM_RS09500 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AAQM_RS09505 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AAQM_RS09510 PF00361 Proton-conducting membrane transporter AAQM_RS09515 PF01899 Na+/H+ ion antiporter subunit AAQM_RS09520 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AAQM_RS09525 PF03334 Na+/H+ antiporter subunit AAQM_RS09535 PF08448 PAS fold AAQM_RS09535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS09535 PF08447 PAS fold AAQM_RS09540 PF03150 Di-haem cytochrome c peroxidase AAQM_RS09545 PF04116 Fatty acid hydroxylase superfamily AAQM_RS09575 PF00137 ATP synthase subunit C AAQM_RS09585 PF00924 Mechanosensitive ion channel AAQM_RS09610 PF00171 Aldehyde dehydrogenase family AAQM_RS09625 PF13746 4Fe-4S dicluster domain AAQM_RS09625 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AAQM_RS09625 PF12801 4Fe-4S binding domain AAQM_RS09630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS09630 PF08447 PAS fold AAQM_RS09630 PF00989 PAS fold AAQM_RS09630 PF00512 His Kinase A (phospho-acceptor) domain AAQM_RS09635 PF00072 Response regulator receiver domain AAQM_RS09635 PF12833 Helix-turn-helix domain AAQM_RS09645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AAQM_RS09645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AAQM_RS09645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AAQM_RS09645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AAQM_RS09675 PF00258 Flavodoxin AAQM_RS09680 PF01475 Ferric uptake regulator family AAQM_RS09690 PF07670 Nucleoside recognition AAQM_RS09690 PF07664 Ferrous iron transport protein B C terminus AAQM_RS09690 PF02421 Ferrous iron transport protein B AAQM_RS09705 PF04377 Arginine-tRNA-protein transferase, C terminus AAQM_RS09705 PF04376 Arginine-tRNA-protein transferase, N terminus AAQM_RS09710 PF00290 Tryptophan synthase alpha chain AAQM_RS09715 PF02548 Ketopantoate hydroxymethyltransferase AAQM_RS09720 PF17864 RuvB AAA lid domain AAQM_RS09720 PF05491 RuvB C-terminal winged helix domain AAQM_RS09720 PF05496 Holliday junction DNA helicase RuvB P-loop domain AAQM_RS09725 PF01594 AI-2E family transporter AAQM_RS09735 PF09905 DNA-binding protein VF530 AAQM_RS09780 PF04055 Radical SAM superfamily AAQM_RS09785 PF01208 Uroporphyrinogen decarboxylase (URO-D) AAQM_RS09795 PF01118 Semialdehyde dehydrogenase, NAD binding domain AAQM_RS09795 PF02774 Semialdehyde dehydrogenase, dimerisation domain AAQM_RS09800 PF03989 DNA gyrase C-terminal domain, beta-propeller AAQM_RS09800 PF00521 DNA gyrase/topoisomerase IV, subunit A AAQM_RS09805 PF04325 Protein of unknown function (DUF465) AAQM_RS09810 PF01960 ArgJ family AAQM_RS09820 PF00830 Ribosomal L28 family AAQM_RS09830 PF08645 Polynucleotide kinase 3 phosphatase AAQM_RS09835 PF01370 NAD dependent epimerase/dehydratase family AAQM_RS09840 PF00294 pfkB family carbohydrate kinase AAQM_RS09840 PF01467 Cytidylyltransferase-like AAQM_RS09845 PF13580 SIS domain AAQM_RS09850 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AAQM_RS09865 PF00535 Glycosyl transferase family 2 AAQM_RS09880 PF00534 Glycosyl transferases group 1 AAQM_RS09880 PF13439 Glycosyltransferase Family 4 AAQM_RS09895 PF03062 MBOAT, membrane-bound O-acyltransferase family AAQM_RS09905 PF03062 MBOAT, membrane-bound O-acyltransferase family AAQM_RS09915 PF00535 Glycosyl transferase family 2 AAQM_RS09925 PF00535 Glycosyl transferase family 2 AAQM_RS09930 PF16363 GDP-mannose 4,6 dehydratase AAQM_RS09935 PF04321 RmlD substrate binding domain AAQM_RS09940 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AAQM_RS09945 PF00483 Nucleotidyl transferase AAQM_RS09965 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AAQM_RS09970 PF02541 Ppx/GppA phosphatase family AAQM_RS09975 PF00037 4Fe-4S binding domain AAQM_RS09985 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_RS09985 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AAQM_RS09990 PF01493 GXGXG motif AAQM_RS09990 PF00310 Glutamine amidotransferases class-II AAQM_RS09990 PF01645 Conserved region in glutamate synthase AAQM_RS09990 PF04898 Glutamate synthase central domain AAQM_RS09995 PF03009 Glycerophosphoryl diester phosphodiesterase family AAQM_RS10025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS10025 PF08447 PAS fold AAQM_RS10025 PF08448 PAS fold AAQM_RS10060 PF02719 Polysaccharide biosynthesis protein AAQM_RS10065 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AAQM_RS10070 PF00953 Glycosyl transferase family 4 AAQM_RS10085 PF01370 NAD dependent epimerase/dehydratase family AAQM_RS10090 PF13439 Glycosyltransferase Family 4 AAQM_RS10090 PF00534 Glycosyl transferases group 1 AAQM_RS10095 PF16363 GDP-mannose 4,6 dehydratase AAQM_RS10125 PF00535 Glycosyl transferase family 2 AAQM_RS10135 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AAQM_RS10145 PF01370 NAD dependent epimerase/dehydratase family AAQM_RS10150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAQM_RS10150 PF00205 Thiamine pyrophosphate enzyme, central domain AAQM_RS10150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AAQM_RS10155 PF16363 GDP-mannose 4,6 dehydratase AAQM_RS10160 PF00483 Nucleotidyl transferase AAQM_RS10165 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AAQM_RS10170 PF00132 Bacterial transferase hexapeptide (six repeats) AAQM_RS10175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AAQM_RS10175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AAQM_RS10180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AAQM_RS10180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AAQM_RS10180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AAQM_RS10185 PF00885 6,7-dimethyl-8-ribityllumazine synthase AAQM_RS10190 PF01029 NusB family AAQM_RS10195 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AAQM_RS10210 PF00793 DAHP synthetase I family AAQM_RS10235 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AAQM_RS10250 PF00263 Bacterial type II and III secretion system protein AAQM_RS10250 PF03958 Bacterial type II/III secretion system short domain AAQM_RS10255 PF01205 Uncharacterized protein family UPF0029 AAQM_RS10255 PF09186 Domain of unknown function (DUF1949) AAQM_RS10260 PF01728 FtsJ-like methyltransferase AAQM_RS10260 PF01479 S4 domain AAQM_RS10265 PF01687 Riboflavin kinase AAQM_RS10265 PF06574 FAD synthetase AAQM_RS10270 PF13649 Methyltransferase domain AAQM_RS10275 PF00578 AhpC/TSA family AAQM_RS10285 PF01565 FAD binding domain AAQM_RS10285 PF02913 FAD linked oxidases, C-terminal domain AAQM_RS10290 PF03631 Virulence factor BrkB AAQM_RS10295 PF01695 IstB-like ATP binding protein AAQM_RS10300 PF02796 Helix-turn-helix domain of resolvase AAQM_RS10300 PF00665 Integrase core domain AAQM_RS10305 PF00665 Integrase core domain AAQM_RS10345 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_RS10345 PF07724 AAA domain (Cdc48 subfamily) AAQM_RS10345 PF17871 AAA lid domain AAQM_RS10345 PF10431 C-terminal, D2-small domain, of ClpB protein AAQM_RS10345 PF02861 Clp amino terminal domain, pathogenicity island component AAQM_RS10350 PF02617 ATP-dependent Clp protease adaptor protein ClpS AAQM_RS10365 PF13193 AMP-binding enzyme C-terminal domain AAQM_RS10365 PF00501 AMP-binding enzyme AAQM_RS10370 PF01575 MaoC like domain AAQM_RS10390 PF00672 HAMP domain AAQM_RS10390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS10390 PF02203 Tar ligand binding domain homologue AAQM_RS10395 PF01741 Large-conductance mechanosensitive channel, MscL AAQM_RS10400 PF01613 Flavin reductase like domain AAQM_RS10430 PF00771 FHIPEP family AAQM_RS10435 PF00700 Bacterial flagellin C-terminal helical region AAQM_RS10435 PF00669 Bacterial flagellin N-terminal helical region AAQM_RS10440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AAQM_RS10440 PF18269 T3SS EscN ATPase C-terminal domain AAQM_RS10450 PF01312 FlhB HrpN YscU SpaS Family AAQM_RS10465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_RS10465 PF00460 Flagella basal body rod protein AAQM_RS10470 PF02049 Flagellar hook-basal body complex protein FliE AAQM_RS10480 PF10609 NUBPL iron-transfer P-loop NTPase AAQM_RS10485 PF00448 SRP54-type protein, GTPase domain AAQM_RS10510 PF01618 MotA/TolQ/ExbB proton channel family AAQM_RS10515 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AAQM_RS10535 PF07559 Flagellar basal body protein FlaE AAQM_RS10535 PF00460 Flagella basal body rod protein AAQM_RS10535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_RS10535 PF07196 Flagellin hook IN motif AAQM_RS10540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_RS10540 PF00460 Flagella basal body rod protein AAQM_RS10550 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AAQM_RS10560 PF01706 FliG C-terminal domain AAQM_RS10560 PF14841 FliG middle domain AAQM_RS10560 PF14842 FliG N-terminal domain AAQM_RS10565 PF01514 Secretory protein of YscJ/FliF family AAQM_RS10565 PF08345 Flagellar M-ring protein C-terminal AAQM_RS10570 PF00460 Flagella basal body rod protein AAQM_RS10575 PF00460 Flagella basal body rod protein AAQM_RS10575 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_RS10585 PF00072 Response regulator receiver domain AAQM_RS10590 PF00460 Flagella basal body rod protein AAQM_RS10590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AAQM_RS10605 PF01782 RimM N-terminal domain AAQM_RS10615 PF00886 Ribosomal protein S16 AAQM_RS10620 PF00448 SRP54-type protein, GTPase domain AAQM_RS10620 PF02978 Signal peptide binding domain AAQM_RS10620 PF02881 SRP54-type protein, helical bundle domain AAQM_RS10625 PF00849 RNA pseudouridylate synthase AAQM_RS10630 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AAQM_RS10640 PF01784 NIF3 (NGG1p interacting factor 3) AAQM_RS10645 PF02091 Glycyl-tRNA synthetase alpha subunit AAQM_RS10655 PF00731 AIR carboxylase AAQM_RS10670 PF00672 HAMP domain AAQM_RS10670 PF17200 Single Cache domain 2 AAQM_RS10670 PF00672 HAMP domain AAQM_RS10670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS10670 PF17200 Single Cache domain 2 AAQM_RS10670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS10675 PF13476 AAA domain AAQM_RS10680 PF01513 ATP-NAD kinase AAQM_RS10685 PF00009 Elongation factor Tu GTP binding domain AAQM_RS10685 PF14492 Elongation Factor G, domain II AAQM_RS10685 PF03144 Elongation factor Tu domain 2 AAQM_RS10685 PF03764 Elongation factor G, domain IV AAQM_RS10685 PF00679 Elongation factor G C-terminus AAQM_RS10690 PF00177 Ribosomal protein S7p/S5e AAQM_RS10695 PF00164 Ribosomal protein S12/S23 AAQM_RS10700 PF07690 Major Facilitator Superfamily AAQM_RS10745 PF04997 RNA polymerase Rpb1, domain 1 AAQM_RS10745 PF05000 RNA polymerase Rpb1, domain 4 AAQM_RS10745 PF00623 RNA polymerase Rpb1, domain 2 AAQM_RS10745 PF04983 RNA polymerase Rpb1, domain 3 AAQM_RS10745 PF04998 RNA polymerase Rpb1, domain 5 AAQM_RS10750 PF04565 RNA polymerase Rpb2, domain 3 AAQM_RS10750 PF04561 RNA polymerase Rpb2, domain 2 AAQM_RS10750 PF04563 RNA polymerase beta subunit AAQM_RS10750 PF04560 RNA polymerase Rpb2, domain 7 AAQM_RS10750 PF00562 RNA polymerase Rpb2, domain 6 AAQM_RS10750 PF10385 RNA polymerase beta subunit external 1 domain AAQM_RS10755 PF00542 Ribosomal protein L7/L12 C-terminal domain AAQM_RS10755 PF16320 Ribosomal protein L7/L12 dimerisation domain AAQM_RS10760 PF00466 Ribosomal protein L10 AAQM_RS10765 PF00687 Ribosomal protein L1p/L10e family AAQM_RS10770 PF03946 Ribosomal protein L11, N-terminal domain AAQM_RS10770 PF00298 Ribosomal protein L11, RNA binding domain AAQM_RS10775 PF02357 Transcription termination factor nusG AAQM_RS10790 PF00471 Ribosomal protein L33 AAQM_RS10795 PF00009 Elongation factor Tu GTP binding domain AAQM_RS10795 PF03144 Elongation factor Tu domain 2 AAQM_RS10795 PF03143 Elongation factor Tu C-terminal domain AAQM_RS10820 PF08245 Mur ligase middle domain AAQM_RS10825 PF00953 Glycosyl transferase family 4 AAQM_RS10825 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AAQM_RS10830 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AAQM_RS10830 PF01676 Metalloenzyme superfamily AAQM_RS10835 PF00005 ABC transporter AAQM_RS10835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AAQM_RS10840 PF17092 Penicillin-binding protein OB-like domain AAQM_RS10840 PF00912 Transglycosylase AAQM_RS10840 PF00905 Penicillin binding protein transpeptidase domain AAQM_RS10845 PF00120 Glutamine synthetase, catalytic domain AAQM_RS10845 PF03951 Glutamine synthetase, beta-Grasp domain AAQM_RS10855 PF00072 Response regulator receiver domain AAQM_RS10855 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS10860 PF02391 MoaE protein AAQM_RS10870 PF02621 Menaquinone biosynthesis AAQM_RS10880 PF03033 Glycosyltransferase family 28 N-terminal domain AAQM_RS10880 PF04101 Glycosyltransferase family 28 C-terminal domain AAQM_RS10885 PF01098 Cell cycle protein AAQM_RS10895 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AAQM_RS10935 PF00117 Glutamine amidotransferase class-I AAQM_RS10940 PF13416 Bacterial extracellular solute-binding protein AAQM_RS10945 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_RS10950 PF00005 ABC transporter AAQM_RS10955 PF03707 Bacterial signalling protein N terminal repeat AAQM_RS10955 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS10955 PF00563 EAL domain AAQM_RS10960 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AAQM_RS10960 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AAQM_RS10980 PF09371 Tex-like protein N-terminal domain AAQM_RS10980 PF00575 S1 RNA binding domain AAQM_RS10980 PF16921 Tex protein YqgF-like domain AAQM_RS10980 PF17674 HHH domain AAQM_RS10990 PF00563 EAL domain AAQM_RS10990 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS10990 PF08448 PAS fold AAQM_RS10995 PF01042 Endoribonuclease L-PSP AAQM_RS11010 PF00155 Aminotransferase class I and II AAQM_RS11025 PF01245 Ribosomal protein L19 AAQM_RS11030 PF01746 tRNA (Guanine-1)-methyltransferase AAQM_RS11040 PF01717 Cobalamin-independent synthase, Catalytic domain AAQM_RS11040 PF08267 Cobalamin-independent synthase, N-terminal domain AAQM_RS11045 PF13291 ACT domain AAQM_RS11045 PF00291 Pyridoxal-phosphate dependent enzyme AAQM_RS11050 PF00119 ATP synthase A chain AAQM_RS11055 PF02581 Thiamine monophosphate synthase AAQM_RS11060 PF13361 UvrD-like helicase C-terminal domain AAQM_RS11060 PF00580 UvrD/REP helicase N-terminal domain AAQM_RS11065 PF00696 Amino acid kinase family AAQM_RS11070 PF00291 Pyridoxal-phosphate dependent enzyme AAQM_RS11075 PF00355 Rieske [2Fe-2S] domain AAQM_RS11080 PF00032 Cytochrome b(C-terminal)/b6/petD AAQM_RS11080 PF00033 Cytochrome b/b6/petB AAQM_RS11085 PF00034 Cytochrome c AAQM_RS11095 PF04452 RNA methyltransferase AAQM_RS11105 PF03453 MoeA N-terminal region (domain I and II) AAQM_RS11105 PF03454 MoeA C-terminal region (domain IV) AAQM_RS11105 PF00994 Probable molybdopterin binding domain AAQM_RS11110 PF06508 Queuosine biosynthesis protein QueC AAQM_RS11120 PF04055 Radical SAM superfamily AAQM_RS11130 PF00550 Phosphopantetheine attachment site AAQM_RS11135 PF00109 Beta-ketoacyl synthase, N-terminal domain AAQM_RS11135 PF02801 Beta-ketoacyl synthase, C-terminal domain AAQM_RS11140 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AAQM_RS11145 PF01230 HIT domain AAQM_RS11150 PF01409 tRNA synthetases class II core domain (F) AAQM_RS11150 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AAQM_RS11155 PF03147 Ferredoxin-fold anticodon binding domain AAQM_RS11155 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AAQM_RS11155 PF03484 tRNA synthetase B5 domain AAQM_RS11155 PF01588 Putative tRNA binding domain AAQM_RS11160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AAQM_RS11165 PF02401 LytB protein AAQM_RS11170 PF00575 S1 RNA binding domain AAQM_RS11175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AAQM_RS11175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AAQM_RS11175 PF01842 ACT domain AAQM_RS11180 PF09285 Elongation factor P, C-terminal AAQM_RS11180 PF08207 Elongation factor P (EF-P) KOW-like domain AAQM_RS11180 PF01132 Elongation factor P (EF-P) OB domain AAQM_RS11185 PF01872 RibD C-terminal domain AAQM_RS11185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AAQM_RS11190 PF02576 RimP N-terminal domain AAQM_RS11195 PF02033 Ribosome-binding factor A AAQM_RS11200 PF04760 Translation initiation factor IF-2, N-terminal region AAQM_RS11200 PF11987 Translation-initiation factor 2 AAQM_RS11200 PF00009 Elongation factor Tu GTP binding domain AAQM_RS11210 PF00288 GHMP kinases N terminal domain AAQM_RS11210 PF08544 GHMP kinases C terminal AAQM_RS11220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AAQM_RS11235 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AAQM_RS11235 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AAQM_RS11240 PF02445 Quinolinate synthetase A protein AAQM_RS11245 PF02660 Glycerol-3-phosphate acyltransferase AAQM_RS11255 PF05538 Campylobacter major outer membrane protein AAQM_RS11265 PF00472 RF-1 domain AAQM_RS11265 PF03462 PCRF domain AAQM_RS11290 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AAQM_RS11290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AAQM_RS11305 PF00115 Cytochrome C and Quinol oxidase polypeptide I AAQM_RS11310 PF01668 SmpB protein AAQM_RS11315 PF00288 GHMP kinases N terminal domain AAQM_RS11320 PF01509 TruB family pseudouridylate synthase (N terminal domain) AAQM_RS11325 PF13361 UvrD-like helicase C-terminal domain AAQM_RS11325 PF00580 UvrD/REP helicase N-terminal domain AAQM_RS11330 PF03466 LysR substrate binding domain AAQM_RS11330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AAQM_RS11335 PF16199 Radical_SAM C-terminal domain AAQM_RS11335 PF04055 Radical SAM superfamily AAQM_RS11340 PF13537 Glutamine amidotransferase domain AAQM_RS11340 PF00156 Phosphoribosyl transferase domain AAQM_RS11345 PF05173 Dihydrodipicolinate reductase, C-terminus AAQM_RS11345 PF01113 Dihydrodipicolinate reductase, N-terminus AAQM_RS11350 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_RS11355 PF00085 Thioredoxin AAQM_RS11360 PF02272 DHHA1 domain AAQM_RS11360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AAQM_RS11360 PF01411 tRNA synthetases class II (A) AAQM_RS11385 PF00877 NlpC/P60 family AAQM_RS11390 PF00877 NlpC/P60 family AAQM_RS11400 PF00892 EamA-like transporter family AAQM_RS11405 PF02545 Maf-like protein AAQM_RS11410 PF03150 Di-haem cytochrome c peroxidase AAQM_RS11410 PF00034 Cytochrome c AAQM_RS11415 PF02779 Transketolase, pyrimidine binding domain AAQM_RS11415 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AAQM_RS11415 PF02780 Transketolase, C-terminal domain AAQM_RS11420 PF00155 Aminotransferase class I and II AAQM_RS11425 PF01842 ACT domain AAQM_RS11425 PF00800 Prephenate dehydratase AAQM_RS11425 PF01817 Chorismate mutase type II AAQM_RS11430 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AAQM_RS11430 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AAQM_RS11440 PF00121 Triosephosphate isomerase AAQM_RS11445 PF00162 Phosphoglycerate kinase AAQM_RS11450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AAQM_RS11450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AAQM_RS11455 PF01467 Cytidylyltransferase-like AAQM_RS11465 PF00750 tRNA synthetases class I (R) AAQM_RS11465 PF05746 DALR anticodon binding domain AAQM_RS11465 PF03485 Arginyl tRNA synthetase N terminal domain AAQM_RS11470 PF02416 mttA/Hcf106 family AAQM_RS11475 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AAQM_RS11480 PF01553 Acyltransferase AAQM_RS11495 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AAQM_RS11500 PF01259 SAICAR synthetase AAQM_RS11505 PF03572 Peptidase family S41 AAQM_RS11505 PF13180 PDZ domain AAQM_RS11520 PF01142 tRNA pseudouridine synthase D (TruD) AAQM_RS11535 PF02687 FtsX-like permease family AAQM_RS11535 PF00005 ABC transporter AAQM_RS11535 PF12704 MacB-like periplasmic core domain AAQM_RS11605 PF00920 Dehydratase family AAQM_RS11610 PF13180 PDZ domain AAQM_RS11610 PF17820 PDZ domain AAQM_RS11615 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS11615 PF00072 Response regulator receiver domain AAQM_RS11630 PF03186 CobD/Cbib protein AAQM_RS11635 PF11066 Protein of unknown function (DUF2867) AAQM_RS11635 PF13460 NAD(P)H-binding AAQM_RS11640 PF07685 CobB/CobQ-like glutamine amidotransferase domain AAQM_RS11640 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AAQM_RS11670 PF00155 Aminotransferase class I and II AAQM_RS11675 PF02654 Cobalamin-5-phosphate synthase AAQM_RS11685 PF01914 MarC family integral membrane protein AAQM_RS11690 PF13472 GDSL-like Lipase/Acylhydrolase family AAQM_RS11690 PF02348 Cytidylyltransferase AAQM_RS11695 PF02277 Phosphoribosyltransferase AAQM_RS11700 PF00939 Sodium:sulfate symporter transmembrane region AAQM_RS11710 PF11412 Disulphide bond corrector protein DsbC AAQM_RS11710 PF02683 Cytochrome C biogenesis protein transmembrane region AAQM_RS11715 PF00085 Thioredoxin AAQM_RS11720 PF00581 Rhodanese-like domain AAQM_RS11735 PF08443 RimK-like ATP-grasp domain AAQM_RS11735 PF18030 RimK PreATP-grasp domain AAQM_RS11750 PF00563 EAL domain AAQM_RS11750 PF08495 FIST N domain AAQM_RS11750 PF10442 FIST C domain AAQM_RS11750 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS11755 PF02666 Phosphatidylserine decarboxylase AAQM_RS11765 PF03562 MltA specific insert domain AAQM_RS11765 PF06725 3D domain AAQM_RS11775 PF00012 Hsp70 protein AAQM_RS11780 PF01025 GrpE AAQM_RS11785 PF01628 HrcA protein C terminal domain AAQM_RS11800 PF00158 Sigma-54 interaction domain AAQM_RS11800 PF00072 Response regulator receiver domain AAQM_RS11805 PF08448 PAS fold AAQM_RS11805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AAQM_RS11805 PF08447 PAS fold AAQM_RS11810 PF01416 tRNA pseudouridine synthase AAQM_RS11820 PF06750 Bacterial Peptidase A24 N-terminal domain AAQM_RS11820 PF01478 Type IV leader peptidase family AAQM_RS11825 PF01255 Putative undecaprenyl diphosphate synthase AAQM_RS11830 PF04127 DNA / pantothenate metabolism flavoprotein AAQM_RS11830 PF02441 Flavoprotein AAQM_RS11835 PF12804 MobA-like NTP transferase domain AAQM_RS11835 PF14602 Hexapeptide repeat of succinyl-transferase AAQM_RS11845 PF00270 DEAD/DEAH box helicase AAQM_RS11845 PF08148 DSHCT (NUC185) domain AAQM_RS11845 PF00271 Helicase conserved C-terminal domain AAQM_RS11850 PF05958 tRNA (Uracil-5-)-methyltransferase AAQM_RS11855 PF00700 Bacterial flagellin C-terminal helical region AAQM_RS11855 PF07196 Flagellin hook IN motif AAQM_RS11855 PF00669 Bacterial flagellin N-terminal helical region AAQM_RS11860 PF00669 Bacterial flagellin N-terminal helical region AAQM_RS11860 PF00700 Bacterial flagellin C-terminal helical region AAQM_RS11860 PF07196 Flagellin hook IN motif AAQM_RS11870 PF08666 SAF domain AAQM_RS11870 PF03102 NeuB family AAQM_RS11885 PF02348 Cytidylyltransferase AAQM_RS11890 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AAQM_RS11895 PF02719 Polysaccharide biosynthesis protein AAQM_RS11920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AAQM_RS11920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AAQM_RS11930 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AAQM_RS11935 PF16363 GDP-mannose 4,6 dehydratase AAQM_RS11945 PF00154 recA bacterial DNA recombination protein AAQM_RS11950 PF03952 Enolase, N-terminal domain AAQM_RS11950 PF00113 Enolase, C-terminal TIM barrel domain AAQM_RS11965 PF04055 Radical SAM superfamily AAQM_RS11965 PF06968 Biotin and Thiamin Synthesis associated domain AAQM_RS11975 PF01131 DNA topoisomerase AAQM_RS11975 PF01751 Toprim domain AAQM_RS11975 PF13368 Topoisomerase C-terminal repeat AAQM_RS11980 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AAQM_RS11985 PF02621 Menaquinone biosynthesis AAQM_RS11995 PF00361 Proton-conducting membrane transporter AAQM_RS12000 PF00361 Proton-conducting membrane transporter AAQM_RS12000 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AAQM_RS12005 PF00361 Proton-conducting membrane transporter AAQM_RS12005 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AAQM_RS12010 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AAQM_RS12015 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AAQM_RS12020 PF12838 4Fe-4S dicluster domain AAQM_RS12025 PF00146 NADH dehydrogenase AAQM_RS12030 PF00384 Molybdopterin oxidoreductase AAQM_RS12030 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AAQM_RS12030 PF01568 Molydopterin dinucleotide binding domain AAQM_RS12030 PF12838 4Fe-4S dicluster domain AAQM_RS12030 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AAQM_RS12045 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AAQM_RS12050 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AAQM_RS12055 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AAQM_RS12060 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AAQM_RS12065 PF00004 ATPase family associated with various cellular activities (AAA) AAQM_RS12065 PF16450 Proteasomal ATPase OB C-terminal domain AAQM_RS12065 PF17758 Proteasomal ATPase OB N-terminal domain AAQM_RS12090 PF01740 STAS domain AAQM_RS12090 PF00916 Sulfate permease family AAQM_RS12095 PF01261 Xylose isomerase-like TIM barrel AAQM_RS12100 PF07992 Pyridine nucleotide-disulphide oxidoreductase AAQM_RS12105 PF00209 Sodium:neurotransmitter symporter family AAQM_RS12115 PF02677 Epoxyqueuosine reductase QueH AAQM_RS12120 PF02684 Lipid-A-disaccharide synthetase AAQM_RS12125 PF07977 FabA-like domain AAQM_RS12130 PF00132 Bacterial transferase hexapeptide (six repeats) AAQM_RS12130 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AAQM_RS12135 PF07724 AAA domain (Cdc48 subfamily) AAQM_RS12135 PF10431 C-terminal, D2-small domain, of ClpB protein AAQM_RS12135 PF06689 ClpX C4-type zinc finger AAQM_RS12150 PF00677 Lumazine binding domain AAQM_RS12155 PF01134 Glucose inhibited division protein A AAQM_RS12155 PF13932 GidA associated domain AAQM_RS12165 PF03372 Endonuclease/Exonuclease/phosphatase family AAQM_RS12170 PF02086 D12 class N6 adenine-specific DNA methyltransferase AAQM_RS12175 PF00580 UvrD/REP helicase N-terminal domain AAQM_RS12175 PF13361 UvrD-like helicase C-terminal domain AAQM_RS12195 PF00665 Integrase core domain AAQM_RS12210 PF00709 Adenylosuccinate synthetase AAQM_RS12235 PF13746 4Fe-4S dicluster domain AAQM_RS12235 PF12801 4Fe-4S binding domain AAQM_RS12235 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AAQM_RS12240 PF06418 CTP synthase N-terminus AAQM_RS12240 PF00117 Glutamine amidotransferase class-I AAQM_RS12245 PF01368 DHH family AAQM_RS12245 PF02272 DHHA1 domain AAQM_RS12245 PF17768 RecJ OB domain AAQM_RS12245 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AAQM_RS12275 PF07733 Bacterial DNA polymerase III alpha NTPase domain AAQM_RS12275 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AAQM_RS12275 PF14579 Helix-hairpin-helix motif AAQM_RS12275 PF02811 PHP domain AAQM_RS12280 PF01975 Survival protein SurE AAQM_RS12290 PF01165 Ribosomal protein S21 AAQM_RS12295 PF01967 MoaC family AAQM_RS12330 PF01027 Inhibitor of apoptosis-promoting Bax1 AAQM_RS12335 PF02581 Thiamine monophosphate synthase AAQM_RS12335 PF17792 ThiD2 family AAQM_RS12345 PF03840 Preprotein translocase SecG subunit AAQM_RS12355 PF01765 Ribosome recycling factor AAQM_RS12360 PF00156 Phosphoribosyl transferase domain AAQM_RS12370 PF12832 MFS_1 like family AAQM_RS12375 PF12794 Mechanosensitive ion channel inner membrane domain 1 AAQM_RS12375 PF12795 Mechanosensitive ion channel porin domain AAQM_RS12375 PF00924 Mechanosensitive ion channel AAQM_RS12380 PF01544 CorA-like Mg2+ transporter protein AAQM_RS12385 PF03883 Peroxide stress protein YaaA AAQM_RS12390 PF02810 SEC-C motif AAQM_RS12415 PF03167 Uracil DNA glycosylase superfamily AAQM_RS12420 PF00171 Aldehyde dehydrogenase family AAQM_RS12425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AAQM_RS12425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AAQM_RS12425 PF00205 Thiamine pyrophosphate enzyme, central domain AAQM_RS12430 PF04011 LemA family AAQM_RS12445 PF13419 Haloacid dehalogenase-like hydrolase AAQM_RS12460 PF07690 Major Facilitator Superfamily AAQM_RS12465 PF00672 HAMP domain AAQM_RS12465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AAQM_RS12465 PF02203 Tar ligand binding domain homologue AAQM_RS12510 PF01053 Cys/Met metabolism PLP-dependent enzyme AAQM_RS12515 PF02082 Transcriptional regulator AAQM_RS12520 PF00291 Pyridoxal-phosphate dependent enzyme AAQM_RS12530 PF01507 Phosphoadenosine phosphosulfate reductase family AAQM_RS12535 PF01507 Phosphoadenosine phosphosulfate reductase family AAQM_RS12540 PF00009 Elongation factor Tu GTP binding domain AAQM_RS12545 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AAQM_RS12545 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AAQM_RS12565 PF00266 Aminotransferase class-V AAQM_RS12570 PF00149 Calcineurin-like phosphoesterase AAQM_RS12575 PF00011 Hsp20/alpha crystallin family AAQM_RS12585 PF04168 A predicted alpha-helical domain with a conserved ER motif. AAQM_RS12585 PF14403 Circularly permuted ATP-grasp type 2 AAQM_RS12590 PF01841 Transglutaminase-like superfamily AAQM_RS12590 PF08379 Bacterial transglutaminase-like N-terminal region AAQM_RS12595 PF12857 TOBE-like domain AAQM_RS12595 PF17850 CysA C-terminal regulatory domain AAQM_RS12595 PF00005 ABC transporter AAQM_RS12600 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_RS12605 PF00528 Binding-protein-dependent transport system inner membrane component AAQM_RS12610 PF00990 Diguanylate cyclase, GGDEF domain AAQM_RS12610 PF10442 FIST C domain AAQM_RS12610 PF08495 FIST N domain AAQM_RS12610 PF00563 EAL domain AAQM_RS12620 PF02082 Transcriptional regulator AAQM_RS12640 PF14403 Circularly permuted ATP-grasp type 2 AAQM_RS12650 PF00884 Sulfatase AAQM_RS12655 PF08019 Phosphoethanolamine transferase EptA/EptB AAQM_RS12655 PF00884 Sulfatase AAQM_RS12665 PF01219 Prokaryotic diacylglycerol kinase AAQM_RS12685 PF00072 Response regulator receiver domain AAQM_RS12685 PF00486 Transcriptional regulatory protein, C terminal AAQM_RS12695 PF04143 Sulphur transport AAQM_RS12700 PF01206 Sulfurtransferase TusA AAQM_RS12705 PF02511 Thymidylate synthase complementing protein AAQM_RS12710 PF04960 Glutaminase AAQM_RS12715 PF03458 UPF0126 domain AAQM_RS12725 PF02911 Formyl transferase, C-terminal domain AAQM_RS12725 PF00551 Formyl transferase AAQM_RS12730 PF02075 Crossover junction endodeoxyribonuclease RuvC