locus-tag class description ABED_RS00005 PF00308 Bacterial dnaA protein ABED_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix ABED_RS00005 PF11638 DnaA N-terminal domain ABED_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ABED_RS00010 PF02767 DNA polymerase III beta subunit, central domain ABED_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ABED_RS00015 PF00204 DNA gyrase B ABED_RS00015 PF01751 Toprim domain ABED_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus ABED_RS00020 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_RS00025 PF14489 QueF-like protein ABED_RS00035 PF09335 SNARE associated Golgi protein ABED_RS00040 PF13649 Methyltransferase domain ABED_RS00045 PF08402 TOBE domain ABED_RS00045 PF00005 ABC transporter ABED_RS00050 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_RS00065 PF03459 TOBE domain ABED_RS00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_RS00075 PF03466 LysR substrate binding domain ABED_RS00090 PF00849 RNA pseudouridylate synthase ABED_RS00095 PF10397 Adenylosuccinate lyase C-terminus ABED_RS00095 PF00206 Lyase ABED_RS00100 PF02867 Ribonucleotide reductase, barrel domain ABED_RS00100 PF03477 ATP cone domain ABED_RS00100 PF00317 Ribonucleotide reductase, all-alpha domain ABED_RS00105 PF00268 Ribonucleotide reductase, small chain ABED_RS00125 PF18393 MotY N-terminal domain ABED_RS00125 PF00691 OmpA family ABED_RS00135 PF00107 Zinc-binding dehydrogenase ABED_RS00135 PF08240 Alcohol dehydrogenase GroES-like domain ABED_RS00140 PF01638 HxlR-like helix-turn-helix ABED_RS00145 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ABED_RS00145 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ABED_RS00150 PF02637 GatB domain ABED_RS00150 PF02934 GatB/GatE catalytic domain ABED_RS00165 PF02652 L-lactate permease ABED_RS00170 PF00072 Response regulator receiver domain ABED_RS00170 PF00486 Transcriptional regulatory protein, C terminal ABED_RS00175 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS00175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS00175 PF00989 PAS fold ABED_RS00180 PF02589 LUD domain ABED_RS00185 PF11870 Domain of unknown function (DUF3390) ABED_RS00185 PF13183 4Fe-4S dicluster domain ABED_RS00185 PF02589 LUD domain ABED_RS00190 PF02754 Cysteine-rich domain ABED_RS00195 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABED_RS00200 PF00364 Biotin-requiring enzyme ABED_RS00205 PF02785 Biotin carboxylase C-terminal domain ABED_RS00205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABED_RS00205 PF00289 Biotin carboxylase, N-terminal domain ABED_RS00210 PF00270 DEAD/DEAH box helicase ABED_RS00210 PF00271 Helicase conserved C-terminal domain ABED_RS00215 PF01384 Phosphate transporter family ABED_RS00225 PF13537 Glutamine amidotransferase domain ABED_RS00225 PF00733 Asparagine synthase ABED_RS00235 PF13638 PIN domain ABED_RS00235 PF02562 PhoH-like protein ABED_RS00240 PF03653 Uncharacterised protein family (UPF0093) ABED_RS00245 PF12002 MgsA AAA+ ATPase C terminal ABED_RS00245 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABED_RS00245 PF01661 Macro domain ABED_RS00245 PF16193 AAA C-terminal domain ABED_RS00250 PF00849 RNA pseudouridylate synthase ABED_RS00250 PF01479 S4 domain ABED_RS00255 PF00571 CBS domain ABED_RS00255 PF01380 SIS domain ABED_RS00260 PF00753 Metallo-beta-lactamase superfamily ABED_RS00260 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ABED_RS00260 PF17770 Ribonuclease J C-terminal domain ABED_RS00265 PF00398 Ribosomal RNA adenine dimethylase ABED_RS00270 PF00977 Histidine biosynthesis protein ABED_RS00285 PF04055 Radical SAM superfamily ABED_RS00290 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABED_RS00295 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ABED_RS00300 PF00486 Transcriptional regulatory protein, C terminal ABED_RS00300 PF00072 Response regulator receiver domain ABED_RS00305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS00325 PF00873 AcrB/AcrD/AcrF family ABED_RS00330 PF04264 YceI-like domain ABED_RS00355 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABED_RS00355 PF03129 Anticodon binding domain ABED_RS00355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABED_RS00360 PF00707 Translation initiation factor IF-3, C-terminal domain ABED_RS00360 PF05198 Translation initiation factor IF-3, N-terminal domain ABED_RS00365 PF01632 Ribosomal protein L35 ABED_RS00370 PF00453 Ribosomal protein L20 ABED_RS00385 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_RS00390 PF12804 MobA-like NTP transferase domain ABED_RS00395 PF00330 Aconitase family (aconitate hydratase) ABED_RS00400 PF01252 Signal peptidase (SPase) II ABED_RS00405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABED_RS00405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABED_RS00405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABED_RS00405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABED_RS00410 PF01649 Ribosomal protein S20 ABED_RS00415 PF00472 RF-1 domain ABED_RS00415 PF03462 PCRF domain ABED_RS00425 PF12849 PBP superfamily domain ABED_RS00430 PF00563 EAL domain ABED_RS00430 PF12792 CSS motif domain associated with EAL ABED_RS00435 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS00440 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS00445 PF00005 ABC transporter ABED_RS00450 PF01895 PhoU domain ABED_RS00460 PF00072 Response regulator receiver domain ABED_RS00460 PF00486 Transcriptional regulatory protein, C terminal ABED_RS00465 PF16736 Single Cache-like ABED_RS00465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS00465 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS00465 PF00989 PAS fold ABED_RS00470 PF00572 Ribosomal protein L13 ABED_RS00475 PF00380 Ribosomal protein S9/S16 ABED_RS00480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABED_RS00485 PF13419 Haloacid dehalogenase-like hydrolase ABED_RS00505 PF00005 ABC transporter ABED_RS00505 PF09383 NIL domain ABED_RS00510 PF02405 Permease MlaE ABED_RS00515 PF02664 S-Ribosylhomocysteinase (LuxS) ABED_RS00530 PF00768 D-alanyl-D-alanine carboxypeptidase ABED_RS00530 PF07943 Penicillin-binding protein 5, C-terminal domain ABED_RS00545 PF00809 Pterin binding enzyme ABED_RS00545 PF02310 B12 binding domain ABED_RS00545 PF02607 B12 binding domain ABED_RS00545 PF02574 Homocysteine S-methyltransferase ABED_RS00545 PF02965 Vitamin B12 dependent methionine synthase, activation domain ABED_RS00550 PF01063 Amino-transferase class IV ABED_RS00565 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ABED_RS00565 PF01502 Phosphoribosyl-AMP cyclohydrolase ABED_RS00575 PF10609 NUBPL iron-transfer P-loop NTPase ABED_RS00575 PF01883 Iron-sulfur cluster assembly protein ABED_RS00580 PF01964 Radical SAM ThiC family ABED_RS00590 PF02542 YgbB family ABED_RS00590 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ABED_RS00600 PF04608 Phosphatidylglycerophosphatase A ABED_RS00610 PF00117 Glutamine amidotransferase class-I ABED_RS00610 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABED_RS00620 PF00709 Adenylosuccinate synthetase ABED_RS00625 PF13393 Histidyl-tRNA synthetase ABED_RS00630 PF00266 Aminotransferase class-V ABED_RS00635 PF04264 YceI-like domain ABED_RS00640 PF01047 MarR family ABED_RS00645 PF04264 YceI-like domain ABED_RS00660 PF02678 Pirin ABED_RS00660 PF17954 Quercetinase C-terminal cupin domain ABED_RS00665 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABED_RS00665 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABED_RS00670 PF02769 AIR synthase related protein, C-terminal domain ABED_RS00670 PF00586 AIR synthase related protein, N-terminal domain ABED_RS00675 PF17284 Spermidine synthase tetramerisation domain ABED_RS00680 PF01121 Dephospho-CoA kinase ABED_RS00685 PF01678 Diaminopimelate epimerase ABED_RS00690 PF02222 ATP-grasp domain ABED_RS00695 PF00583 Acetyltransferase (GNAT) family ABED_RS00705 PF02705 K+ potassium transporter ABED_RS00730 PF01197 Ribosomal protein L31 ABED_RS00735 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABED_RS00740 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABED_RS00740 PF00588 SpoU rRNA Methylase family ABED_RS00750 PF00155 Aminotransferase class I and II ABED_RS00755 PF03447 Homoserine dehydrogenase, NAD binding domain ABED_RS00755 PF01842 ACT domain ABED_RS00755 PF00742 Homoserine dehydrogenase ABED_RS00770 PF13288 DXP reductoisomerase C-terminal domain ABED_RS00770 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ABED_RS00770 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABED_RS00785 PF00814 Glycoprotease family ABED_RS00790 PF01253 Translation initiation factor SUI1 ABED_RS00795 PF03853 YjeF-related protein N-terminus ABED_RS00795 PF01256 Carbohydrate kinase ABED_RS00800 PF03091 CutA1 divalent ion tolerance protein ABED_RS00805 PF05690 Thiazole biosynthesis protein ThiG ABED_RS00845 PF02436 Conserved carboxylase domain ABED_RS00845 PF00682 HMGL-like ABED_RS00855 PF12833 Helix-turn-helix domain ABED_RS00860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS00860 PF12729 Four helix bundle sensory module for signal transduction ABED_RS00860 PF00672 HAMP domain ABED_RS00880 PF02780 Transketolase, C-terminal domain ABED_RS00880 PF02779 Transketolase, pyrimidine binding domain ABED_RS00880 PF00456 Transketolase, thiamine diphosphate binding domain ABED_RS00885 PF03788 LrgA family ABED_RS00890 PF04172 LrgB-like family ABED_RS00900 PF03994 Domain of Unknown Function (DUF350) ABED_RS00905 PF00375 Sodium:dicarboxylate symporter family ABED_RS00935 PF00501 AMP-binding enzyme ABED_RS00935 PF01553 Acyltransferase ABED_RS00935 PF13193 AMP-binding enzyme C-terminal domain ABED_RS00940 PF08335 GlnD PII-uridylyltransferase ABED_RS00940 PF01966 HD domain ABED_RS00955 PF12796 Ankyrin repeats (3 copies) ABED_RS00960 PF00543 Nitrogen regulatory protein P-II ABED_RS00970 PF02154 Flagellar motor switch protein FliM ABED_RS00970 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABED_RS00975 PF02119 Flagellar P-ring protein ABED_RS00985 PF01313 Bacterial export proteins, family 3 ABED_RS01010 PF02107 Flagellar L-ring protein ABED_RS01015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_RS01015 PF00460 Flagella basal body rod protein ABED_RS01015 PF07559 Flagellar basal body protein FlaE ABED_RS01020 PF07196 Flagellin hook IN motif ABED_RS01020 PF07195 Flagellar hook-associated protein 2 C-terminus ABED_RS01020 PF02465 Flagellar hook-associated protein 2 N-terminus ABED_RS01025 PF02561 Flagellar protein FliS ABED_RS01035 PF01171 PP-loop family ABED_RS01040 PF00919 Uncharacterized protein family UPF0004 ABED_RS01040 PF18693 TRAM domain ABED_RS01040 PF04055 Radical SAM superfamily ABED_RS01045 PF02569 Pantoate-beta-alanine ligase ABED_RS01050 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS01055 PF01648 4'-phosphopantetheinyl transferase superfamily ABED_RS01060 PF03616 Sodium/glutamate symporter ABED_RS01065 PF03652 Holliday junction resolvase ABED_RS01080 PF00923 Transaldolase/Fructose-6-phosphate aldolase ABED_RS01085 PF01474 Class-II DAHP synthetase family ABED_RS01090 PF03502 Nucleoside-specific channel-forming protein, Tsx ABED_RS01095 PF03960 ArsC family ABED_RS01100 PF02686 Glu-tRNAGln amidotransferase C subunit ABED_RS01105 PF01702 Queuine tRNA-ribosyltransferase ABED_RS01115 PF00155 Aminotransferase class I and II ABED_RS01125 PF02875 Mur ligase family, glutamate ligase domain ABED_RS01125 PF01225 Mur ligase family, catalytic domain ABED_RS01125 PF08245 Mur ligase middle domain ABED_RS01135 PF04748 Divergent polysaccharide deacetylase ABED_RS01140 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ABED_RS01140 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ABED_RS01145 PF00773 RNB domain ABED_RS01150 PF02623 FliW protein ABED_RS01160 PF01250 Ribosomal protein S6 ABED_RS01165 PF00436 Single-strand binding protein family ABED_RS01170 PF01084 Ribosomal protein S18 ABED_RS01180 PF09190 DALR domain ABED_RS01180 PF01406 tRNA synthetases class I (C) catalytic domain ABED_RS01185 PF13184 NusA-like KH domain ABED_RS01185 PF08529 NusA N-terminal domain ABED_RS01195 PF01938 TRAM domain ABED_RS01195 PF00919 Uncharacterized protein family UPF0004 ABED_RS01195 PF04055 Radical SAM superfamily ABED_RS01200 PF04028 Domain of unknown function (DUF374) ABED_RS01215 PF04055 Radical SAM superfamily ABED_RS01225 PF00484 Carbonic anhydrase ABED_RS01230 PF00155 Aminotransferase class I and II ABED_RS01235 PF02021 Uncharacterised protein family UPF0102 ABED_RS01240 PF05690 Thiazole biosynthesis protein ThiG ABED_RS01240 PF02597 ThiS family ABED_RS01250 PF00224 Pyruvate kinase, barrel domain ABED_RS01250 PF00391 PEP-utilising enzyme, mobile domain ABED_RS01250 PF02887 Pyruvate kinase, alpha/beta domain ABED_RS01255 PF00202 Aminotransferase class-III ABED_RS01265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABED_RS01265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABED_RS01270 PF00425 chorismate binding enzyme ABED_RS01290 PF03831 PhnA domain ABED_RS01290 PF08274 PhnA Zinc-Ribbon ABED_RS01295 PF01863 Protein of unknown function DUF45 ABED_RS01300 PF01925 Sulfite exporter TauE/SafE ABED_RS01325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABED_RS01325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABED_RS01340 PF00285 Citrate synthase, C-terminal domain ABED_RS01345 PF00694 Aconitase C-terminal domain ABED_RS01345 PF00330 Aconitase family (aconitate hydratase) ABED_RS01350 PF04303 PrpF protein ABED_RS01360 PF00857 Isochorismatase family ABED_RS01370 PF03900 Porphobilinogen deaminase, C-terminal domain ABED_RS01370 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ABED_RS01380 PF12169 DNA polymerase III subunits gamma and tau domain III ABED_RS01380 PF12170 DNA polymerase III tau subunit V interacting with alpha ABED_RS01385 PF01177 Asp/Glu/Hydantoin racemase ABED_RS01390 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABED_RS01390 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABED_RS01395 PF07497 Rho termination factor, RNA-binding domain ABED_RS01395 PF07498 Rho termination factor, N-terminal domain ABED_RS01395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_RS01400 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABED_RS01400 PF00578 AhpC/TSA family ABED_RS01405 PF00037 4Fe-4S binding domain ABED_RS01410 PF00334 Nucleoside diphosphate kinase ABED_RS01420 PF01783 Ribosomal L32p protein family ABED_RS01425 PF02504 Fatty acid synthesis protein ABED_RS01430 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABED_RS01430 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABED_RS01440 PF00350 Dynamin family ABED_RS01445 PF00350 Dynamin family ABED_RS01450 PF13085 2Fe-2S iron-sulfur cluster binding domain ABED_RS01450 PF13183 4Fe-4S dicluster domain ABED_RS01455 PF00890 FAD binding domain ABED_RS01455 PF02910 Fumarate reductase flavoprotein C-term ABED_RS01460 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABED_RS01465 PF00361 Proton-conducting membrane transporter ABED_RS01470 PF00361 Proton-conducting membrane transporter ABED_RS01470 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ABED_RS01475 PF00361 Proton-conducting membrane transporter ABED_RS01475 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABED_RS01480 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABED_RS01485 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABED_RS01490 PF12838 4Fe-4S dicluster domain ABED_RS01495 PF00146 NADH dehydrogenase ABED_RS01500 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABED_RS01500 PF00384 Molybdopterin oxidoreductase ABED_RS01500 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ABED_RS01505 PF00285 Citrate synthase, C-terminal domain ABED_RS01510 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ABED_RS01510 PF10531 SLBB domain ABED_RS01510 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABED_RS01520 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ABED_RS01520 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ABED_RS01525 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_RS01530 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABED_RS01535 PF00155 Aminotransferase class I and II ABED_RS01540 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ABED_RS01545 PF12821 Threonine/Serine exporter, ThrE ABED_RS01545 PF06738 Putative threonine/serine exporter ABED_RS01550 PF06738 Putative threonine/serine exporter ABED_RS01560 PF03309 Type III pantothenate kinase ABED_RS01565 PF01634 ATP phosphoribosyltransferase ABED_RS01575 PF02203 Tar ligand binding domain homologue ABED_RS01575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS01575 PF00672 HAMP domain ABED_RS01585 PF00579 tRNA synthetases class I (W and Y) ABED_RS01590 PF00593 TonB dependent receptor ABED_RS01605 PF13649 Methyltransferase domain ABED_RS01610 PF07715 TonB-dependent Receptor Plug Domain ABED_RS01610 PF00593 TonB dependent receptor ABED_RS01620 PF02659 Putative manganese efflux pump ABED_RS01635 PF16916 Dimerisation domain of Zinc Transporter ABED_RS01635 PF01545 Cation efflux family ABED_RS01640 PF02403 Seryl-tRNA synthetase N-terminal domain ABED_RS01640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABED_RS01645 PF05140 ResB-like family ABED_RS01645 PF01578 Cytochrome C assembly protein ABED_RS01650 PF02335 Cytochrome c552 ABED_RS01655 PF03264 NapC/NirT cytochrome c family, N-terminal region ABED_RS01665 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS01665 PF08495 FIST N domain ABED_RS01665 PF00563 EAL domain ABED_RS01665 PF10442 FIST C domain ABED_RS01670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS01670 PF08447 PAS fold ABED_RS01690 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ABED_RS01695 PF12801 4Fe-4S binding domain ABED_RS01695 PF00037 4Fe-4S binding domain ABED_RS01700 PF12838 4Fe-4S dicluster domain ABED_RS01700 PF12800 4Fe-4S binding domain ABED_RS01705 PF01568 Molydopterin dinucleotide binding domain ABED_RS01705 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABED_RS01705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_RS01705 PF00384 Molybdopterin oxidoreductase ABED_RS01710 PF03480 Bacterial extracellular solute-binding protein, family 7 ABED_RS01715 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ABED_RS01720 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABED_RS01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS01725 PF08447 PAS fold ABED_RS01725 PF08448 PAS fold ABED_RS01730 PF00072 Response regulator receiver domain ABED_RS01730 PF12833 Helix-turn-helix domain ABED_RS01735 PF03737 Aldolase/RraA ABED_RS01740 PF14824 Sirohaem biosynthesis protein central ABED_RS01740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABED_RS01740 PF10414 Sirohaem synthase dimerisation region ABED_RS01750 PF00027 Cyclic nucleotide-binding domain ABED_RS01750 PF13545 Crp-like helix-turn-helix domain ABED_RS01755 PF00591 Glycosyl transferase family, a/b domain ABED_RS01755 PF02885 Glycosyl transferase family, helical bundle domain ABED_RS01760 PF04055 Radical SAM superfamily ABED_RS01760 PF06463 Molybdenum Cofactor Synthesis C ABED_RS01765 PF00312 Ribosomal protein S15 ABED_RS01780 PF13380 CoA binding domain ABED_RS01785 PF08521 Two-component sensor kinase N-terminal ABED_RS01785 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS01785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS01790 PF00486 Transcriptional regulatory protein, C terminal ABED_RS01790 PF00072 Response regulator receiver domain ABED_RS01795 PF00639 PPIC-type PPIASE domain ABED_RS01800 PF01116 Fructose-bisphosphate aldolase class-II ABED_RS01805 PF00171 Aldehyde dehydrogenase family ABED_RS01815 PF02472 Biopolymer transport protein ExbD/TolR ABED_RS01820 PF01618 MotA/TolQ/ExbB proton channel family ABED_RS01830 PF01202 Shikimate kinase ABED_RS01835 PF00815 Histidinol dehydrogenase ABED_RS01845 PF00348 Polyprenyl synthetase ABED_RS01850 PF01488 Shikimate / quinate 5-dehydrogenase ABED_RS01850 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ABED_RS01850 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ABED_RS01855 PF04073 Aminoacyl-tRNA editing domain ABED_RS01855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABED_RS01855 PF03129 Anticodon binding domain ABED_RS01860 PF00924 Mechanosensitive ion channel ABED_RS01860 PF05552 Conserved TM helix ABED_RS01865 PF01743 Poly A polymerase head domain ABED_RS01865 PF12627 Probable RNA and SrmB- binding site of polymerase A ABED_RS01865 PF01966 HD domain ABED_RS01885 PF02699 Preprotein translocase subunit ABED_RS01890 PF02355 Protein export membrane protein ABED_RS01895 PF02355 Protein export membrane protein ABED_RS01895 PF07549 SecD/SecF GG Motif ABED_RS01910 PF00691 OmpA family ABED_RS01910 PF13677 Membrane MotB of proton-channel complex MotA/MotB ABED_RS01915 PF01618 MotA/TolQ/ExbB proton channel family ABED_RS01925 PF09334 tRNA synthetases class I (M) ABED_RS01925 PF13603 Leucyl-tRNA synthetase, Domain 2 ABED_RS01925 PF00133 tRNA synthetases class I (I, L, M and V) ABED_RS01935 PF08245 Mur ligase middle domain ABED_RS01965 PF17757 UvrB interaction domain ABED_RS01965 PF03461 TRCF domain ABED_RS01965 PF00270 DEAD/DEAH box helicase ABED_RS01965 PF02559 CarD-like/TRCF domain ABED_RS01965 PF00271 Helicase conserved C-terminal domain ABED_RS01985 PF00072 Response regulator receiver domain ABED_RS01985 PF00486 Transcriptional regulatory protein, C terminal ABED_RS02000 PF02743 Cache domain ABED_RS02000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS02000 PF00672 HAMP domain ABED_RS02005 PF02954 Bacterial regulatory protein, Fis family ABED_RS02005 PF00072 Response regulator receiver domain ABED_RS02005 PF00158 Sigma-54 interaction domain ABED_RS02015 PF13426 PAS domain ABED_RS02015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS02015 PF00672 HAMP domain ABED_RS02015 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS02020 PF13277 YmdB-like protein ABED_RS02035 PF01209 ubiE/COQ5 methyltransferase family ABED_RS02040 PF02601 Exonuclease VII, large subunit ABED_RS02040 PF13742 OB-fold nucleic acid binding domain ABED_RS02045 PF01584 CheW-like domain ABED_RS02050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABED_RS02055 PF02261 Aspartate decarboxylase ABED_RS02060 PF02575 YbaB/EbfC DNA-binding family ABED_RS02065 PF00348 Polyprenyl synthetase ABED_RS02070 PF00166 Chaperonin 10 Kd subunit ABED_RS02075 PF00118 TCP-1/cpn60 chaperonin family ABED_RS02080 PF00672 HAMP domain ABED_RS02080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS02080 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS02085 PF00072 Response regulator receiver domain ABED_RS02085 PF00486 Transcriptional regulatory protein, C terminal ABED_RS02090 PF00149 Calcineurin-like phosphoesterase ABED_RS02115 PF00005 ABC transporter ABED_RS02130 PF00459 Inositol monophosphatase family ABED_RS02135 PF01380 SIS domain ABED_RS02140 PF00438 S-adenosylmethionine synthetase, N-terminal domain ABED_RS02140 PF02773 S-adenosylmethionine synthetase, C-terminal domain ABED_RS02140 PF02772 S-adenosylmethionine synthetase, central domain ABED_RS02145 PF17848 Acetyl-coA carboxylase zinc finger domain ABED_RS02145 PF01039 Carboxyl transferase domain ABED_RS02150 PF02581 Thiamine monophosphate synthase ABED_RS02155 PF02590 Predicted SPOUT methyltransferase ABED_RS02165 PF01207 Dihydrouridine synthase (Dus) ABED_RS02175 PF17862 AAA+ lid domain ABED_RS02175 PF01434 Peptidase family M41 ABED_RS02175 PF00004 ATPase family associated with various cellular activities (AAA) ABED_RS02180 PF11849 Domain of unknown function (DUF3369) ABED_RS02185 PF00486 Transcriptional regulatory protein, C terminal ABED_RS02185 PF00072 Response regulator receiver domain ABED_RS02190 PF08447 PAS fold ABED_RS02190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS02190 PF08448 PAS fold ABED_RS02195 PF00682 HMGL-like ABED_RS02195 PF08502 LeuA allosteric (dimerisation) domain ABED_RS02200 PF00085 Thioredoxin ABED_RS02210 PF05190 MutS family domain IV ABED_RS02210 PF05192 MutS domain III ABED_RS02210 PF00488 MutS domain V ABED_RS02210 PF05188 MutS domain II ABED_RS02210 PF01624 MutS domain I ABED_RS02215 PF00873 AcrB/AcrD/AcrF family ABED_RS02220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_RS02250 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit ABED_RS02260 PF00664 ABC transporter transmembrane region ABED_RS02260 PF00005 ABC transporter ABED_RS02270 PF01266 FAD dependent oxidoreductase ABED_RS02275 PF00563 EAL domain ABED_RS02275 PF03707 Bacterial signalling protein N terminal repeat ABED_RS02275 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS02280 PF00977 Histidine biosynthesis protein ABED_RS02285 PF01370 NAD dependent epimerase/dehydratase family ABED_RS02285 PF08338 Domain of unknown function (DUF1731) ABED_RS02290 PF00117 Glutamine amidotransferase class-I ABED_RS02310 PF00679 Elongation factor G C-terminus ABED_RS02310 PF06421 GTP-binding protein LepA C-terminus ABED_RS02310 PF03144 Elongation factor Tu domain 2 ABED_RS02310 PF00009 Elongation factor Tu GTP binding domain ABED_RS02315 PF02583 Metal-sensitive transcriptional repressor ABED_RS02320 PF00403 Heavy-metal-associated domain ABED_RS02325 PF05736 OprF membrane domain ABED_RS02325 PF00691 OmpA family ABED_RS02330 PF14572 Phosphoribosyl synthetase-associated domain ABED_RS02330 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABED_RS02350 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ABED_RS02355 PF00557 Metallopeptidase family M24 ABED_RS02355 PF01321 Creatinase/Prolidase N-terminal domain ABED_RS02360 PF01220 Dehydroquinase class II ABED_RS02365 PF01979 Amidohydrolase family ABED_RS02370 PF01343 Peptidase family S49 ABED_RS02375 PF00871 Acetokinase family ABED_RS02380 PF01515 Phosphate acetyl/butaryl transferase ABED_RS02385 PF00871 Acetokinase family ABED_RS02395 PF00871 Acetokinase family ABED_RS02400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABED_RS02400 PF14579 Helix-hairpin-helix motif ABED_RS02400 PF02811 PHP domain ABED_RS02400 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABED_RS02400 PF11490 DNA polymerase III polC-type N-terminus II ABED_RS02400 PF14480 DNA polymerase III polC-type N-terminus I ABED_RS02400 PF00929 Exonuclease ABED_RS02410 PF00474 Sodium:solute symporter family ABED_RS02420 PF00474 Sodium:solute symporter family ABED_RS02430 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABED_RS02430 PF02811 PHP domain ABED_RS02430 PF14579 Helix-hairpin-helix motif ABED_RS02430 PF00929 Exonuclease ABED_RS02430 PF11490 DNA polymerase III polC-type N-terminus II ABED_RS02430 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABED_RS02440 PF00474 Sodium:solute symporter family ABED_RS02450 PF00486 Transcriptional regulatory protein, C terminal ABED_RS02450 PF00072 Response regulator receiver domain ABED_RS02455 PF00672 HAMP domain ABED_RS02455 PF13426 PAS domain ABED_RS02455 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS02455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS02500 PF02464 Competence-damaged protein ABED_RS02500 PF00994 Probable molybdopterin binding domain ABED_RS02500 PF18146 Damage-inducible protein CinA KH domain ABED_RS02505 PF06039 Malate:quinone oxidoreductase (Mqo) ABED_RS02510 PF08264 Anticodon-binding domain of tRNA ABED_RS02510 PF00133 tRNA synthetases class I (I, L, M and V) ABED_RS02525 PF02875 Mur ligase family, glutamate ligase domain ABED_RS02525 PF08245 Mur ligase middle domain ABED_RS02545 PF00486 Transcriptional regulatory protein, C terminal ABED_RS02545 PF00072 Response regulator receiver domain ABED_RS02550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS02550 PF07730 Histidine kinase ABED_RS02565 PF00248 Aldo/keto reductase family ABED_RS02570 PF01384 Phosphate transporter family ABED_RS02575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS02575 PF02203 Tar ligand binding domain homologue ABED_RS02575 PF00672 HAMP domain ABED_RS02585 PF00672 HAMP domain ABED_RS02585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS02585 PF02203 Tar ligand binding domain homologue ABED_RS02590 PF03061 Thioesterase superfamily ABED_RS02600 PF01435 Peptidase family M48 ABED_RS02600 PF16491 CAAX prenyl protease N-terminal, five membrane helices ABED_RS02605 PF02646 RmuC family ABED_RS02615 PF03454 MoeA C-terminal region (domain IV) ABED_RS02615 PF03453 MoeA N-terminal region (domain I and II) ABED_RS02615 PF00994 Probable molybdopterin binding domain ABED_RS02625 PF01171 PP-loop family ABED_RS02645 PF00318 Ribosomal protein S2 ABED_RS02650 PF00889 Elongation factor TS ABED_RS02655 PF00005 ABC transporter ABED_RS02665 PF00625 Guanylate kinase ABED_RS02670 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS02670 PF00563 EAL domain ABED_RS02670 PF08448 PAS fold ABED_RS02675 PF00403 Heavy-metal-associated domain ABED_RS02690 PF00005 ABC transporter ABED_RS02690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABED_RS02695 PF00762 Ferrochelatase ABED_RS02700 PF02421 Ferrous iron transport protein B ABED_RS02700 PF07664 Ferrous iron transport protein B C terminus ABED_RS02700 PF07670 Nucleoside recognition ABED_RS02710 PF02698 DUF218 domain ABED_RS02715 PF00005 ABC transporter ABED_RS02720 PF00950 ABC 3 transport family ABED_RS02725 PF13509 S1 domain ABED_RS02725 PF17783 CvfB-like winged helix domain ABED_RS02730 PF08534 Redoxin ABED_RS02750 PF13361 UvrD-like helicase C-terminal domain ABED_RS02750 PF00580 UvrD/REP helicase N-terminal domain ABED_RS02755 PF02080 TrkA-C domain ABED_RS02755 PF00999 Sodium/hydrogen exchanger family ABED_RS02755 PF02254 TrkA-N domain ABED_RS02760 PF08264 Anticodon-binding domain of tRNA ABED_RS02760 PF00133 tRNA synthetases class I (I, L, M and V) ABED_RS02760 PF10458 Valyl tRNA synthetase tRNA binding arm ABED_RS02765 PF09962 Uncharacterized conserved protein (DUF2196) ABED_RS02775 PF07690 Major Facilitator Superfamily ABED_RS02780 PF01725 Ham1 family ABED_RS02800 PF03807 NADP oxidoreductase coenzyme F420-dependent ABED_RS02800 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABED_RS02805 PF13525 Outer membrane lipoprotein ABED_RS02810 PF00004 ATPase family associated with various cellular activities (AAA) ABED_RS02810 PF02190 ATP-dependent protease La (LON) substrate-binding domain ABED_RS02810 PF05362 Lon protease (S16) C-terminal proteolytic domain ABED_RS02820 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABED_RS02835 PF01047 MarR family ABED_RS02850 PF08447 PAS fold ABED_RS02850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS02855 PF02203 Tar ligand binding domain homologue ABED_RS02855 PF00672 HAMP domain ABED_RS02855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS02860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS02860 PF13426 PAS domain ABED_RS02860 PF08447 PAS fold ABED_RS02880 PF02785 Biotin carboxylase C-terminal domain ABED_RS02880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABED_RS02880 PF00289 Biotin carboxylase, N-terminal domain ABED_RS02885 PF01883 Iron-sulfur cluster assembly protein ABED_RS02890 PF02657 Fe-S metabolism associated domain ABED_RS02895 PF00266 Aminotransferase class-V ABED_RS02905 PF00005 ABC transporter ABED_RS02910 PF01458 Uncharacterized protein family (UPF0051) ABED_RS02915 PF00266 Aminotransferase class-V ABED_RS02920 PF01592 NifU-like N terminal domain ABED_RS02920 PF04324 BFD-like [2Fe-2S] binding domain ABED_RS02920 PF01106 NifU-like domain ABED_RS02925 PF01769 Divalent cation transporter ABED_RS02925 PF03448 MgtE intracellular N domain ABED_RS02925 PF00571 CBS domain ABED_RS02930 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS02930 PF07694 5TMR of 5TMR-LYT ABED_RS02935 PF14698 Argininosuccinate lyase C-terminal ABED_RS02935 PF00206 Lyase ABED_RS02940 PF01584 CheW-like domain ABED_RS02940 PF00072 Response regulator receiver domain ABED_RS02945 PF00899 ThiF family ABED_RS02950 PF01272 Transcription elongation factor, GreA/GreB, C-term ABED_RS02950 PF03449 Transcription elongation factor, N-terminal ABED_RS02960 PF04851 Type III restriction enzyme, res subunit ABED_RS02960 PF02151 UvrB/uvrC motif ABED_RS02960 PF12344 Ultra-violet resistance protein B ABED_RS02960 PF17757 UvrB interaction domain ABED_RS02960 PF00271 Helicase conserved C-terminal domain ABED_RS02965 PF00672 HAMP domain ABED_RS02965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS02965 PF02203 Tar ligand binding domain homologue ABED_RS02970 PF00730 HhH-GPD superfamily base excision DNA repair protein ABED_RS02970 PF10576 Iron-sulfur binding domain of endonuclease III ABED_RS02970 PF00633 Helix-hairpin-helix motif ABED_RS02990 PF02203 Tar ligand binding domain homologue ABED_RS02990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS02990 PF00672 HAMP domain ABED_RS03005 PF00072 Response regulator receiver domain ABED_RS03005 PF00486 Transcriptional regulatory protein, C terminal ABED_RS03005 PF01627 Hpt domain ABED_RS03010 PF00989 PAS fold ABED_RS03010 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS03010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS03015 PF00672 HAMP domain ABED_RS03015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS03015 PF02203 Tar ligand binding domain homologue ABED_RS03035 PF02502 Ribose/Galactose Isomerase ABED_RS03040 PF10502 Signal peptidase, peptidase S26 ABED_RS03045 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABED_RS03045 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABED_RS03050 PF14693 Ribosomal protein TL5, C-terminal domain ABED_RS03050 PF01386 Ribosomal L25p family ABED_RS03055 PF01195 Peptidyl-tRNA hydrolase ABED_RS03070 PF01520 N-acetylmuramoyl-L-alanine amidase ABED_RS03080 PF00579 tRNA synthetases class I (W and Y) ABED_RS03080 PF01479 S4 domain ABED_RS03085 PF13291 ACT domain ABED_RS03085 PF04607 Region found in RelA / SpoT proteins ABED_RS03085 PF02824 TGS domain ABED_RS03090 PF01192 RNA polymerase Rpb6 ABED_RS03095 PF00696 Amino acid kinase family ABED_RS03105 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABED_RS03110 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ABED_RS03115 PF04715 Anthranilate synthase component I, N terminal region ABED_RS03115 PF00425 chorismate binding enzyme ABED_RS03125 PF00464 Serine hydroxymethyltransferase ABED_RS03130 PF00152 tRNA synthetases class II (D, K and N) ABED_RS03130 PF01336 OB-fold nucleic acid binding domain ABED_RS03140 PF04551 GcpE protein ABED_RS03145 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS03150 PF03796 DnaB-like helicase C terminal domain ABED_RS03150 PF00772 DnaB-like helicase N terminal domain ABED_RS03160 PF02719 Polysaccharide biosynthesis protein ABED_RS03165 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABED_RS03175 PF08666 SAF domain ABED_RS03175 PF03102 NeuB family ABED_RS03180 PF02350 UDP-N-acetylglucosamine 2-epimerase ABED_RS03185 PF00483 Nucleotidyl transferase ABED_RS03190 PF02348 Cytidylyltransferase ABED_RS03195 PF00202 Aminotransferase class-III ABED_RS03205 PF00117 Glutamine amidotransferase class-I ABED_RS03210 PF00977 Histidine biosynthesis protein ABED_RS03220 PF00795 Carbon-nitrogen hydrolase ABED_RS03240 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_RS03245 PF01370 NAD dependent epimerase/dehydratase family ABED_RS03260 PF01370 NAD dependent epimerase/dehydratase family ABED_RS03270 PF08485 Polysaccharide biosynthesis protein C-terminal ABED_RS03270 PF02719 Polysaccharide biosynthesis protein ABED_RS03275 PF02350 UDP-N-acetylglucosamine 2-epimerase ABED_RS03280 PF04321 RmlD substrate binding domain ABED_RS03290 PF01370 NAD dependent epimerase/dehydratase family ABED_RS03295 PF00953 Glycosyl transferase family 4 ABED_RS03300 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ABED_RS03305 PF02719 Polysaccharide biosynthesis protein ABED_RS03315 PF14743 DNA ligase OB-like domain ABED_RS03315 PF01068 ATP dependent DNA ligase domain ABED_RS03320 PF00156 Phosphoribosyl transferase domain ABED_RS03325 PF00291 Pyridoxal-phosphate dependent enzyme ABED_RS03335 PF00883 Cytosol aminopeptidase family, catalytic domain ABED_RS03335 PF02789 Cytosol aminopeptidase family, N-terminal domain ABED_RS03345 PF02472 Biopolymer transport protein ExbD/TolR ABED_RS03350 PF01618 MotA/TolQ/ExbB proton channel family ABED_RS03365 PF02687 FtsX-like permease family ABED_RS03365 PF12704 MacB-like periplasmic core domain ABED_RS03365 PF00005 ABC transporter ABED_RS03370 PF12704 MacB-like periplasmic core domain ABED_RS03370 PF02687 FtsX-like permease family ABED_RS03370 PF00005 ABC transporter ABED_RS03415 PF01475 Ferric uptake regulator family ABED_RS03425 PF00206 Lyase ABED_RS03425 PF10415 Fumarase C C-terminus ABED_RS03435 PF13426 PAS domain ABED_RS03435 PF07568 Histidine kinase ABED_RS03435 PF13581 Histidine kinase-like ATPase domain ABED_RS03440 PF00072 Response regulator receiver domain ABED_RS03445 PF07715 TonB-dependent Receptor Plug Domain ABED_RS03445 PF00593 TonB dependent receptor ABED_RS03450 PF13640 2OG-Fe(II) oxygenase superfamily ABED_RS03450 PF18331 PKHD-type hydroxylase C-terminal domain ABED_RS03455 PF01070 FMN-dependent dehydrogenase ABED_RS03460 PF00593 TonB dependent receptor ABED_RS03460 PF07715 TonB-dependent Receptor Plug Domain ABED_RS03480 PF13722 5TM C-terminal transporter carbon starvation CstA ABED_RS03480 PF02554 Carbon starvation protein CstA ABED_RS03485 PF06071 Protein of unknown function (DUF933) ABED_RS03485 PF01926 50S ribosome-binding GTPase ABED_RS03505 PF06865 Pyrimidine/purine nucleoside phosphorylase ABED_RS03515 PF00586 AIR synthase related protein, N-terminal domain ABED_RS03515 PF02769 AIR synthase related protein, C-terminal domain ABED_RS03520 PF01142 tRNA pseudouridine synthase D (TruD) ABED_RS03530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS03530 PF00672 HAMP domain ABED_RS03530 PF02203 Tar ligand binding domain homologue ABED_RS03535 PF01330 RuvA N terminal domain ABED_RS03535 PF07499 RuvA, C-terminal domain ABED_RS03540 PF01820 D-ala D-ala ligase N-terminus ABED_RS03540 PF07478 D-ala D-ala ligase C-terminus ABED_RS03550 PF08245 Mur ligase middle domain ABED_RS03550 PF02875 Mur ligase family, glutamate ligase domain ABED_RS03555 PF01230 HIT domain ABED_RS03565 PF00338 Ribosomal protein S10p/S20e ABED_RS03570 PF00297 Ribosomal protein L3 ABED_RS03575 PF00573 Ribosomal protein L4/L1 family ABED_RS03580 PF00276 Ribosomal protein L23 ABED_RS03585 PF03947 Ribosomal Proteins L2, C-terminal domain ABED_RS03585 PF00181 Ribosomal Proteins L2, RNA binding domain ABED_RS03590 PF00203 Ribosomal protein S19 ABED_RS03595 PF00237 Ribosomal protein L22p/L17e ABED_RS03600 PF07650 KH domain ABED_RS03600 PF00189 Ribosomal protein S3, C-terminal domain ABED_RS03605 PF00252 Ribosomal protein L16p/L10e ABED_RS03610 PF00831 Ribosomal L29 protein ABED_RS03615 PF00366 Ribosomal protein S17 ABED_RS03620 PF00238 Ribosomal protein L14p/L23e ABED_RS03625 PF00467 KOW motif ABED_RS03625 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ABED_RS03630 PF00673 ribosomal L5P family C-terminus ABED_RS03630 PF00281 Ribosomal protein L5 ABED_RS03635 PF00253 Ribosomal protein S14p/S29e ABED_RS03640 PF00410 Ribosomal protein S8 ABED_RS03645 PF00347 Ribosomal protein L6 ABED_RS03650 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ABED_RS03655 PF00333 Ribosomal protein S5, N-terminal domain ABED_RS03655 PF03719 Ribosomal protein S5, C-terminal domain ABED_RS03660 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ABED_RS03665 PF00344 SecY translocase ABED_RS03670 PF00557 Metallopeptidase family M24 ABED_RS03675 PF01176 Translation initiation factor 1A / IF-1 ABED_RS03680 PF03167 Uracil DNA glycosylase superfamily ABED_RS03690 PF01336 OB-fold nucleic acid binding domain ABED_RS03690 PF02938 GAD domain ABED_RS03690 PF00152 tRNA synthetases class II (D, K and N) ABED_RS03700 PF04055 Radical SAM superfamily ABED_RS03700 PF08497 Radical SAM N-terminal ABED_RS03705 PF05191 Adenylate kinase, active site lid ABED_RS03720 PF00302 Chloramphenicol acetyltransferase ABED_RS03730 PF00107 Zinc-binding dehydrogenase ABED_RS03730 PF08240 Alcohol dehydrogenase GroES-like domain ABED_RS03735 PF00465 Iron-containing alcohol dehydrogenase ABED_RS03740 PF00672 HAMP domain ABED_RS03740 PF02203 Tar ligand binding domain homologue ABED_RS03740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS03745 PF01168 Alanine racemase, N-terminal domain ABED_RS03745 PF00842 Alanine racemase, C-terminal domain ABED_RS03750 PF01541 GIY-YIG catalytic domain ABED_RS03750 PF02151 UvrB/uvrC motif ABED_RS03750 PF08459 UvrC Helix-hairpin-helix N-terminal ABED_RS03755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS03755 PF02203 Tar ligand binding domain homologue ABED_RS03755 PF00672 HAMP domain ABED_RS03760 PF12729 Four helix bundle sensory module for signal transduction ABED_RS03760 PF00672 HAMP domain ABED_RS03760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS03765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS03765 PF02203 Tar ligand binding domain homologue ABED_RS03765 PF00672 HAMP domain ABED_RS03770 PF02203 Tar ligand binding domain homologue ABED_RS03770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS03770 PF00672 HAMP domain ABED_RS03785 PF08360 QacR-like protein, C-terminal region ABED_RS03785 PF00440 Bacterial regulatory proteins, tetR family ABED_RS03790 PF00873 AcrB/AcrD/AcrF family ABED_RS03795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_RS03795 PF00529 HlyD membrane-fusion protein of T1SS ABED_RS03820 PF08448 PAS fold ABED_RS03820 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS03825 PF03372 Endonuclease/Exonuclease/phosphatase family ABED_RS03845 PF08212 Lipocalin-like domain ABED_RS03860 PF03109 ABC1 family ABED_RS03870 PF00563 EAL domain ABED_RS03870 PF12792 CSS motif domain associated with EAL ABED_RS03875 PF00072 Response regulator receiver domain ABED_RS03875 PF04397 LytTr DNA-binding domain ABED_RS03880 PF06580 Histidine kinase ABED_RS03880 PF07694 5TMR of 5TMR-LYT ABED_RS03880 PF13492 GAF domain ABED_RS03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS03885 PF01593 Flavin containing amine oxidoreductase ABED_RS03890 PF03441 FAD binding domain of DNA photolyase ABED_RS03890 PF00875 DNA photolyase ABED_RS03910 PF00342 Phosphoglucose isomerase ABED_RS03915 PF00483 Nucleotidyl transferase ABED_RS03920 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABED_RS03920 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABED_RS03920 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABED_RS03920 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABED_RS03950 PF02203 Tar ligand binding domain homologue ABED_RS03950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS03950 PF00672 HAMP domain ABED_RS03955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS03955 PF08447 PAS fold ABED_RS03960 PF01361 Tautomerase enzyme ABED_RS03965 PF03466 LysR substrate binding domain ABED_RS03965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_RS03970 PF00218 Indole-3-glycerol phosphate synthase ABED_RS03980 PF03692 Putative zinc- or iron-chelating domain ABED_RS03985 PF05175 Methyltransferase small domain ABED_RS03995 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ABED_RS03995 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ABED_RS03995 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ABED_RS04000 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABED_RS04010 PF14480 DNA polymerase III polC-type N-terminus I ABED_RS04010 PF11490 DNA polymerase III polC-type N-terminus II ABED_RS04010 PF02811 PHP domain ABED_RS04010 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABED_RS04010 PF14579 Helix-hairpin-helix motif ABED_RS04010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABED_RS04010 PF00929 Exonuclease ABED_RS04015 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ABED_RS04020 PF00834 Ribulose-phosphate 3 epimerase family ABED_RS04025 PF02253 Phospholipase A1 ABED_RS04035 PF00293 NUDIX domain ABED_RS04040 PF04461 Protein of unknown function (DUF520) ABED_RS04050 PF04241 Protein of unknown function (DUF423) ABED_RS04055 PF00156 Phosphoribosyl transferase domain ABED_RS04070 PF01168 Alanine racemase, N-terminal domain ABED_RS04135 PF01420 Type I restriction modification DNA specificity domain ABED_RS04160 PF11867 Domain of unknown function (DUF3387) ABED_RS04160 PF18766 SWI2/SNF2 ATPase ABED_RS04160 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ABED_RS04195 PF07804 HipA-like C-terminal domain ABED_RS04195 PF13657 HipA N-terminal domain ABED_RS04205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS04205 PF08447 PAS fold ABED_RS04210 PF00672 HAMP domain ABED_RS04210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS04210 PF02203 Tar ligand binding domain homologue ABED_RS04215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS04215 PF02203 Tar ligand binding domain homologue ABED_RS04215 PF00672 HAMP domain ABED_RS04225 PF02163 Peptidase family M50 ABED_RS04225 PF17820 PDZ domain ABED_RS04230 PF01066 CDP-alcohol phosphatidyltransferase ABED_RS04240 PF00701 Dihydrodipicolinate synthetase family ABED_RS04250 PF01180 Dihydroorotate dehydrogenase ABED_RS04255 PF00664 ABC transporter transmembrane region ABED_RS04255 PF00005 ABC transporter ABED_RS04260 PF03023 Lipid II flippase MurJ ABED_RS04275 PF02130 Uncharacterized protein family UPF0054 ABED_RS04285 PF03575 Peptidase family S51 ABED_RS04290 PF18073 Rubredoxin metal binding domain ABED_RS04295 PF05728 Uncharacterised protein family (UPF0227) ABED_RS04300 PF14376 Haem-binding domain ABED_RS04300 PF00034 Cytochrome c ABED_RS04300 PF03150 Di-haem cytochrome c peroxidase ABED_RS04305 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS04305 PF00563 EAL domain ABED_RS04305 PF03707 Bacterial signalling protein N terminal repeat ABED_RS04315 PF00448 SRP54-type protein, GTPase domain ABED_RS04320 PF00578 AhpC/TSA family ABED_RS04325 PF01812 5-formyltetrahydrofolate cyclo-ligase family ABED_RS04330 PF00013 KH domain ABED_RS04330 PF12072 Domain of unknown function (DUF3552) ABED_RS04330 PF01966 HD domain ABED_RS04340 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS04340 PF12911 N-terminal TM domain of oligopeptide transport permease C ABED_RS04345 PF00106 short chain dehydrogenase ABED_RS04360 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_RS04370 PF00072 Response regulator receiver domain ABED_RS04370 PF00486 Transcriptional regulatory protein, C terminal ABED_RS04375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS04380 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABED_RS04380 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABED_RS04385 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS04390 PF09424 Yqey-like protein ABED_RS04395 PF00005 ABC transporter ABED_RS04395 PF16326 ABC transporter C-terminal domain ABED_RS04395 PF12848 ABC transporter ABED_RS04405 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_RS04410 PF00561 alpha/beta hydrolase fold ABED_RS04425 PF01042 Endoribonuclease L-PSP ABED_RS04440 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ABED_RS04450 PF00117 Glutamine amidotransferase class-I ABED_RS04450 PF00958 GMP synthase C terminal domain ABED_RS04450 PF02540 NAD synthase ABED_RS04455 PF00890 FAD binding domain ABED_RS04465 PF01863 Protein of unknown function DUF45 ABED_RS04470 PF00155 Aminotransferase class I and II ABED_RS04475 PF01545 Cation efflux family ABED_RS04475 PF16916 Dimerisation domain of Zinc Transporter ABED_RS04480 PF01966 HD domain ABED_RS04480 PF00072 Response regulator receiver domain ABED_RS04485 PF00211 Adenylate and Guanylate cyclase catalytic domain ABED_RS04510 PF03062 MBOAT, membrane-bound O-acyltransferase family ABED_RS04520 PF07690 Major Facilitator Superfamily ABED_RS04530 PF01891 Cobalt uptake substrate-specific transmembrane region ABED_RS04530 PF13190 PDGLE domain ABED_RS04545 PF00005 ABC transporter ABED_RS04550 PF17287 POTRA domain ABED_RS04550 PF08479 POTRA domain, ShlB-type ABED_RS04550 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ABED_RS04555 PF05594 Haemagluttinin repeat ABED_RS04555 PF13332 Hemagglutinin repeat ABED_RS04555 PF05860 haemagglutination activity domain ABED_RS04555 PF15526 Novel toxin 21 ABED_RS04555 PF05594 Haemagluttinin repeat ABED_RS04555 PF13332 Hemagglutinin repeat ABED_RS04555 PF05860 haemagglutination activity domain ABED_RS04555 PF15526 Novel toxin 21 ABED_RS04555 PF04829 Pre-toxin domain with VENN motif ABED_RS04555 PF04829 Pre-toxin domain with VENN motif ABED_RS04590 PF03793 PASTA domain ABED_RS04590 PF00069 Protein kinase domain ABED_RS04600 PF01594 AI-2E family transporter ABED_RS04625 PF17760 UvrA interaction domain ABED_RS04625 PF17755 UvrA DNA-binding domain ABED_RS04635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS04635 PF08447 PAS fold ABED_RS04640 PF01925 Sulfite exporter TauE/SafE ABED_RS04645 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_RS04645 PF06426 Serine acetyltransferase, N-terminal ABED_RS04650 PF17810 Arginine decarboxylase helical bundle domain ABED_RS04650 PF17944 Arginine decarboxylase C-terminal helical extension ABED_RS04650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABED_RS04655 PF03129 Anticodon binding domain ABED_RS04655 PF13393 Histidyl-tRNA synthetase ABED_RS04660 PF02223 Thymidylate kinase ABED_RS04665 PF01467 Cytidylyltransferase-like ABED_RS04670 PF02441 Flavoprotein ABED_RS04680 PF01281 Ribosomal protein L9, N-terminal domain ABED_RS04680 PF03948 Ribosomal protein L9, C-terminal domain ABED_RS04685 PF00227 Proteasome subunit ABED_RS04690 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_RS04690 PF07724 AAA domain (Cdc48 subfamily) ABED_RS04700 PF01026 TatD related DNase ABED_RS04710 PF03330 Lytic transglycolase ABED_RS04710 PF05036 Sporulation related domain ABED_RS04715 PF00475 Imidazoleglycerol-phosphate dehydratase ABED_RS04735 PF01926 50S ribosome-binding GTPase ABED_RS04740 PF00583 Acetyltransferase (GNAT) family ABED_RS04760 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABED_RS04765 PF00392 Bacterial regulatory proteins, gntR family ABED_RS04765 PF00155 Aminotransferase class I and II ABED_RS04780 PF00873 AcrB/AcrD/AcrF family ABED_RS04785 PF00873 AcrB/AcrD/AcrF family ABED_RS04790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_RS04800 PF11849 Domain of unknown function (DUF3369) ABED_RS04805 PF00813 FliP family ABED_RS04810 PF03717 Penicillin-binding Protein dimerisation domain ABED_RS04810 PF00905 Penicillin binding protein transpeptidase domain ABED_RS04830 PF00005 ABC transporter ABED_RS04835 PF02390 Putative methyltransferase ABED_RS04845 PF00849 RNA pseudouridylate synthase ABED_RS04845 PF01479 S4 domain ABED_RS04850 PF01098 Cell cycle protein ABED_RS04860 PF00202 Aminotransferase class-III ABED_RS04865 PF06865 Pyrimidine/purine nucleoside phosphorylase ABED_RS04885 PF04539 Sigma-70 region 3 ABED_RS04885 PF04542 Sigma-70 region 2 ABED_RS04885 PF00140 Sigma-70 factor, region 1.2 ABED_RS04885 PF04545 Sigma-70, region 4 ABED_RS04890 PF00694 Aconitase C-terminal domain ABED_RS04895 PF00180 Isocitrate/isopropylmalate dehydrogenase ABED_RS04910 PF00444 Ribosomal protein L36 ABED_RS04915 PF00416 Ribosomal protein S13/S18 ABED_RS04920 PF00411 Ribosomal protein S11 ABED_RS04925 PF01479 S4 domain ABED_RS04925 PF00163 Ribosomal protein S4/S9 N-terminal domain ABED_RS04930 PF01000 RNA polymerase Rpb3/RpoA insert domain ABED_RS04930 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ABED_RS04930 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ABED_RS04935 PF01196 Ribosomal protein L17 ABED_RS04940 PF01425 Amidase ABED_RS04945 PF00571 CBS domain ABED_RS04945 PF00478 IMP dehydrogenase / GMP reductase domain ABED_RS04965 PF00486 Transcriptional regulatory protein, C terminal ABED_RS04965 PF00072 Response regulator receiver domain ABED_RS04995 PF00684 DnaJ central domain ABED_RS04995 PF01556 DnaJ C terminal domain ABED_RS04995 PF00226 DnaJ domain ABED_RS05005 PF00933 Glycosyl hydrolase family 3 N terminal domain ABED_RS05010 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ABED_RS05010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS05010 PF17203 Single cache domain 3 ABED_RS05015 PF00072 Response regulator receiver domain ABED_RS05015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS05015 PF09456 RcsC Alpha-Beta-Loop (ABL) ABED_RS05015 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS05035 PF00005 ABC transporter ABED_RS05050 PF00107 Zinc-binding dehydrogenase ABED_RS05050 PF08240 Alcohol dehydrogenase GroES-like domain ABED_RS05070 PF01638 HxlR-like helix-turn-helix ABED_RS05075 PF02525 Flavodoxin-like fold ABED_RS05085 PF00893 Small Multidrug Resistance protein ABED_RS05100 PF01161 Phosphatidylethanolamine-binding protein ABED_RS05105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_RS05105 PF03466 LysR substrate binding domain ABED_RS05110 PF03601 Conserved hypothetical protein 698 ABED_RS05120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABED_RS05120 PF02770 Acyl-CoA dehydrogenase, middle domain ABED_RS05120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABED_RS05140 PF01638 HxlR-like helix-turn-helix ABED_RS05145 PF02525 Flavodoxin-like fold ABED_RS05155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABED_RS05165 PF00881 Nitroreductase family ABED_RS05175 PF00005 ABC transporter ABED_RS05175 PF12848 ABC transporter ABED_RS05180 PF03061 Thioesterase superfamily ABED_RS05185 PF02203 Tar ligand binding domain homologue ABED_RS05185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS05185 PF00672 HAMP domain ABED_RS05190 PF00533 BRCA1 C Terminus (BRCT) domain ABED_RS05190 PF01653 NAD-dependent DNA ligase adenylation domain ABED_RS05190 PF12826 Helix-hairpin-helix motif ABED_RS05190 PF03120 NAD-dependent DNA ligase OB-fold domain ABED_RS05195 PF03738 Glutathionylspermidine synthase preATP-grasp ABED_RS05205 PF01966 HD domain ABED_RS05210 PF08501 Shikimate dehydrogenase substrate binding domain ABED_RS05220 PF02578 Multi-copper polyphenol oxidoreductase laccase ABED_RS05225 PF00390 Malic enzyme, N-terminal domain ABED_RS05225 PF03949 Malic enzyme, NAD binding domain ABED_RS05225 PF01515 Phosphate acetyl/butaryl transferase ABED_RS05230 PF01842 ACT domain ABED_RS05230 PF00551 Formyl transferase ABED_RS05235 PF00588 SpoU rRNA Methylase family ABED_RS05260 PF00072 Response regulator receiver domain ABED_RS05260 PF00486 Transcriptional regulatory protein, C terminal ABED_RS05270 PF16200 C-terminal region of band_7 ABED_RS05270 PF01145 SPFH domain / Band 7 family ABED_RS05295 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ABED_RS05300 PF00849 RNA pseudouridylate synthase ABED_RS05300 PF01479 S4 domain ABED_RS05305 PF13419 Haloacid dehalogenase-like hydrolase ABED_RS05325 PF00593 TonB dependent receptor ABED_RS05325 PF07715 TonB-dependent Receptor Plug Domain ABED_RS05335 PF00005 ABC transporter ABED_RS05340 PF01032 FecCD transport family ABED_RS05345 PF00999 Sodium/hydrogen exchanger family ABED_RS05350 PF00300 Histidine phosphatase superfamily (branch 1) ABED_RS05355 PF00005 ABC transporter ABED_RS05355 PF00664 ABC transporter transmembrane region ABED_RS05365 PF00486 Transcriptional regulatory protein, C terminal ABED_RS05365 PF00072 Response regulator receiver domain ABED_RS05370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS05395 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS05405 PF00270 DEAD/DEAH box helicase ABED_RS05405 PF00271 Helicase conserved C-terminal domain ABED_RS05410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS05410 PF08447 PAS fold ABED_RS05410 PF08448 PAS fold ABED_RS05415 PF00486 Transcriptional regulatory protein, C terminal ABED_RS05415 PF00072 Response regulator receiver domain ABED_RS05420 PF00691 OmpA family ABED_RS05420 PF05736 OprF membrane domain ABED_RS05425 PF00005 ABC transporter ABED_RS05425 PF00664 ABC transporter transmembrane region ABED_RS05425 PF03412 Peptidase C39 family ABED_RS05435 PF00196 Bacterial regulatory proteins, luxR family ABED_RS05435 PF00072 Response regulator receiver domain ABED_RS05450 PF01761 3-dehydroquinate synthase ABED_RS05460 PF04055 Radical SAM superfamily ABED_RS05460 PF00919 Uncharacterized protein family UPF0004 ABED_RS05465 PF01434 Peptidase family M41 ABED_RS05465 PF00004 ATPase family associated with various cellular activities (AAA) ABED_RS05465 PF17862 AAA+ lid domain ABED_RS05465 PF06480 FtsH Extracellular ABED_RS05475 PF00994 Probable molybdopterin binding domain ABED_RS05480 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABED_RS05525 PF01568 Molydopterin dinucleotide binding domain ABED_RS05525 PF00384 Molybdopterin oxidoreductase ABED_RS05525 PF18364 Molybdopterin oxidoreductase N-terminal domain ABED_RS05530 PF00561 alpha/beta hydrolase fold ABED_RS05535 PF16925 Tetracyclin repressor-like, C-terminal domain ABED_RS05535 PF00440 Bacterial regulatory proteins, tetR family ABED_RS05540 PF01713 Smr domain ABED_RS05540 PF00488 MutS domain V ABED_RS05545 PF01595 Cyclin M transmembrane N-terminal domain ABED_RS05545 PF00571 CBS domain ABED_RS05545 PF03471 Transporter associated domain ABED_RS05555 PF01546 Peptidase family M20/M25/M40 ABED_RS05555 PF07687 Peptidase dimerisation domain ABED_RS05560 PF00909 Ammonium Transporter Family ABED_RS05565 PF00543 Nitrogen regulatory protein P-II ABED_RS05575 PF02541 Ppx/GppA phosphatase family ABED_RS05585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABED_RS05585 PF00205 Thiamine pyrophosphate enzyme, central domain ABED_RS05585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABED_RS05590 PF10369 Small subunit of acetolactate synthase ABED_RS05595 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_RS05595 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ABED_RS05600 PF01580 FtsK/SpoIIIE family ABED_RS05600 PF09397 Ftsk gamma domain ABED_RS05600 PF17854 FtsK alpha domain ABED_RS05615 PF02810 SEC-C motif ABED_RS05620 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ABED_RS05625 PF01926 50S ribosome-binding GTPase ABED_RS05625 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABED_RS05630 PF01740 STAS domain ABED_RS05630 PF00916 Sulfate permease family ABED_RS05640 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ABED_RS05640 PF02843 Phosphoribosylglycinamide synthetase, C domain ABED_RS05640 PF02844 Phosphoribosylglycinamide synthetase, N domain ABED_RS05650 PF03968 OstA-like protein ABED_RS05650 PF04453 LPS transport system D ABED_RS05660 PF00575 S1 RNA binding domain ABED_RS05660 PF03725 3' exoribonuclease family, domain 2 ABED_RS05660 PF01138 3' exoribonuclease family, domain 1 ABED_RS05660 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABED_RS05660 PF00013 KH domain ABED_RS05665 PF00072 Response regulator receiver domain ABED_RS05670 PF01627 Hpt domain ABED_RS05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS05670 PF02895 Signal transducing histidine kinase, homodimeric domain ABED_RS05670 PF09078 CheY binding ABED_RS05670 PF01584 CheW-like domain ABED_RS05675 PF03705 CheR methyltransferase, all-alpha domain ABED_RS05675 PF01739 CheR methyltransferase, SAM binding domain ABED_RS05680 PF03975 CheD chemotactic sensory transduction ABED_RS05685 PF01339 CheB methylesterase ABED_RS05685 PF00072 Response regulator receiver domain ABED_RS05695 PF07690 Major Facilitator Superfamily ABED_RS05700 PF18644 Phage integrase SAM-like domain ABED_RS05700 PF00589 Phage integrase family ABED_RS05720 PF01432 Peptidase family M3 ABED_RS05725 PF05175 Methyltransferase small domain ABED_RS05725 PF17827 PrmC N-terminal domain ABED_RS05730 PF06969 HemN C-terminal domain ABED_RS05730 PF04055 Radical SAM superfamily ABED_RS05735 PF00293 NUDIX domain ABED_RS05740 PF13840 ACT domain ABED_RS05740 PF01842 ACT domain ABED_RS05740 PF00696 Amino acid kinase family ABED_RS05755 PF00809 Pterin binding enzyme ABED_RS05760 PF02153 Prephenate dehydrogenase ABED_RS05760 PF01842 ACT domain ABED_RS05765 PF07244 Surface antigen variable number repeat ABED_RS05765 PF01103 Surface antigen ABED_RS05770 PF04055 Radical SAM superfamily ABED_RS05775 PF05193 Peptidase M16 inactive domain ABED_RS05780 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABED_RS05805 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ABED_RS05815 PF00133 tRNA synthetases class I (I, L, M and V) ABED_RS05815 PF09334 tRNA synthetases class I (M) ABED_RS05815 PF01588 Putative tRNA binding domain ABED_RS05835 PF00682 HMGL-like ABED_RS05835 PF02436 Conserved carboxylase domain ABED_RS05840 PF01293 Phosphoenolpyruvate carboxykinase ABED_RS05845 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABED_RS05845 PF00925 GTP cyclohydrolase II ABED_RS05865 PF02092 Glycyl-tRNA synthetase beta subunit ABED_RS05875 PF02069 Prokaryotic metallothionein ABED_RS05880 PF02527 rRNA small subunit methyltransferase G ABED_RS05885 PF00925 GTP cyclohydrolase II ABED_RS05890 PF00490 Delta-aminolevulinic acid dehydratase ABED_RS05895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS05895 PF00072 Response regulator receiver domain ABED_RS05895 PF13426 PAS domain ABED_RS05900 PF00486 Transcriptional regulatory protein, C terminal ABED_RS05900 PF00072 Response regulator receiver domain ABED_RS05910 PF03477 ATP cone domain ABED_RS05910 PF02867 Ribonucleotide reductase, barrel domain ABED_RS05910 PF00317 Ribonucleotide reductase, all-alpha domain ABED_RS05915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABED_RS05915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABED_RS05920 PF04055 Radical SAM superfamily ABED_RS05920 PF06969 HemN C-terminal domain ABED_RS05935 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ABED_RS05940 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABED_RS05945 PF02540 NAD synthase ABED_RS05960 PF05099 Tellurite resistance protein TerB ABED_RS05960 PF00226 DnaJ domain ABED_RS05975 PF00902 Sec-independent protein translocase protein (TatC) ABED_RS05980 PF02547 Queuosine biosynthesis protein ABED_RS05985 PF00929 Exonuclease ABED_RS06000 PF03781 Sulfatase-modifying factor enzyme 1 ABED_RS06000 PF12867 DinB superfamily ABED_RS06020 PF13183 4Fe-4S dicluster domain ABED_RS06020 PF02665 Nitrate reductase gamma subunit ABED_RS06020 PF02754 Cysteine-rich domain ABED_RS06025 PF01790 Prolipoprotein diacylglyceryl transferase ABED_RS06040 PF01367 5'-3' exonuclease, C-terminal SAM fold ABED_RS06040 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABED_RS06040 PF00476 DNA polymerase family A ABED_RS06040 PF01612 3'-5' exonuclease ABED_RS06050 PF02348 Cytidylyltransferase ABED_RS06055 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS06055 PF10442 FIST C domain ABED_RS06055 PF00563 EAL domain ABED_RS06055 PF08495 FIST N domain ABED_RS06060 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABED_RS06060 PF00005 ABC transporter ABED_RS06065 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABED_RS06070 PF00591 Glycosyl transferase family, a/b domain ABED_RS06070 PF02885 Glycosyl transferase family, helical bundle domain ABED_RS06085 PF00764 Arginosuccinate synthase ABED_RS06090 PF13193 AMP-binding enzyme C-terminal domain ABED_RS06090 PF00501 AMP-binding enzyme ABED_RS06095 PF03062 MBOAT, membrane-bound O-acyltransferase family ABED_RS06105 PF00550 Phosphopantetheine attachment site ABED_RS06110 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_RS06115 PF02080 TrkA-C domain ABED_RS06115 PF02254 TrkA-N domain ABED_RS06120 PF02386 Cation transport protein ABED_RS06125 PF00072 Response regulator receiver domain ABED_RS06125 PF00486 Transcriptional regulatory protein, C terminal ABED_RS06130 PF13493 Domain of unknown function (DUF4118) ABED_RS06130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS06130 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS06130 PF02702 Osmosensitive K+ channel His kinase sensor domain ABED_RS06145 PF13662 Toprim domain ABED_RS06145 PF02132 RecR protein ABED_RS06150 PF00684 DnaJ central domain ABED_RS06150 PF01556 DnaJ C terminal domain ABED_RS06150 PF00226 DnaJ domain ABED_RS06155 PF00291 Pyridoxal-phosphate dependent enzyme ABED_RS06175 PF00753 Metallo-beta-lactamase superfamily ABED_RS06185 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS06190 PF08003 Protein of unknown function (DUF1698) ABED_RS06200 PF01578 Cytochrome C assembly protein ABED_RS06200 PF05140 ResB-like family ABED_RS06205 PF07687 Peptidase dimerisation domain ABED_RS06205 PF01546 Peptidase family M20/M25/M40 ABED_RS06215 PF02203 Tar ligand binding domain homologue ABED_RS06215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS06215 PF00672 HAMP domain ABED_RS06225 PF02810 SEC-C motif ABED_RS06225 PF07517 SecA DEAD-like domain ABED_RS06225 PF07516 SecA Wing and Scaffold domain ABED_RS06225 PF01043 SecA preprotein cross-linking domain ABED_RS06225 PF00271 Helicase conserved C-terminal domain ABED_RS06230 PF12704 MacB-like periplasmic core domain ABED_RS06230 PF02687 FtsX-like permease family ABED_RS06240 PF02618 YceG-like family ABED_RS06245 PF03971 Monomeric isocitrate dehydrogenase ABED_RS06250 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABED_RS06250 PF00056 lactate/malate dehydrogenase, NAD binding domain ABED_RS06275 PF01795 MraW methylase family ABED_RS06285 PF00216 Bacterial DNA-binding protein ABED_RS06325 PF02661 Fic/DOC family ABED_RS06325 PF17841 BID domain of Bartonella effector protein (Bep) ABED_RS06405 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ABED_RS06415 PF00589 Phage integrase family ABED_RS06415 PF02899 Phage integrase, N-terminal SAM-like domain ABED_RS06420 PF02082 Transcriptional regulator ABED_RS06425 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABED_RS06435 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ABED_RS06435 PF01266 FAD dependent oxidoreductase ABED_RS06445 PF00072 Response regulator receiver domain ABED_RS06455 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS06455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS06460 PF01556 DnaJ C terminal domain ABED_RS06460 PF00226 DnaJ domain ABED_RS06465 PF13411 MerR HTH family regulatory protein ABED_RS06470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_RS06475 PF00005 ABC transporter ABED_RS06490 PF03741 Integral membrane protein TerC family ABED_RS06495 PF05525 Branched-chain amino acid transport protein ABED_RS06515 PF02142 MGS-like domain ABED_RS06515 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABED_RS06515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABED_RS06525 PF06965 Na+/H+ antiporter 1 ABED_RS06535 PF00561 alpha/beta hydrolase fold ABED_RS06540 PF00593 TonB dependent receptor ABED_RS06540 PF07715 TonB-dependent Receptor Plug Domain ABED_RS06550 PF12327 FtsZ family, C-terminal domain ABED_RS06550 PF00091 Tubulin/FtsZ family, GTPase domain ABED_RS06555 PF02491 SHS2 domain inserted in FTSA ABED_RS06575 PF03960 ArsC family ABED_RS06595 PF12848 ABC transporter ABED_RS06595 PF16326 ABC transporter C-terminal domain ABED_RS06595 PF00005 ABC transporter ABED_RS06605 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ABED_RS06605 PF14602 Hexapeptide repeat of succinyl-transferase ABED_RS06610 PF13419 Haloacid dehalogenase-like hydrolase ABED_RS06620 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ABED_RS06620 PF18074 Primosomal protein N C-terminal domain ABED_RS06620 PF17764 3′ DNA-binding domain (3′BD) ABED_RS06620 PF00271 Helicase conserved C-terminal domain ABED_RS06620 PF00270 DEAD/DEAH box helicase ABED_RS06645 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ABED_RS06650 PF02769 AIR synthase related protein, C-terminal domain ABED_RS06650 PF00586 AIR synthase related protein, N-terminal domain ABED_RS06660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABED_RS06660 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABED_RS06670 PF01924 Hydrogenase formation hypA family ABED_RS06675 PF01455 HupF/HypC family ABED_RS06680 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABED_RS06690 PF00672 HAMP domain ABED_RS06690 PF02203 Tar ligand binding domain homologue ABED_RS06690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS06705 PF05661 Protein of unknown function (DUF808) ABED_RS06720 PF12823 Domain of unknown function (DUF3817) ABED_RS06730 PF02568 Thiamine biosynthesis protein (ThiI) ABED_RS06730 PF02926 THUMP domain ABED_RS06750 PF17788 HypF Kae1-like domain ABED_RS06750 PF07503 HypF finger ABED_RS06750 PF00708 Acylphosphatase ABED_RS06750 PF01300 Telomere recombination ABED_RS06760 PF01750 Hydrogenase maturation protease ABED_RS06765 PF01292 Prokaryotic cytochrome b561 ABED_RS06770 PF00374 Nickel-dependent hydrogenase ABED_RS06775 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_RS06775 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABED_RS06775 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ABED_RS06795 PF01750 Hydrogenase maturation protease ABED_RS06800 PF01292 Prokaryotic cytochrome b561 ABED_RS06805 PF00374 Nickel-dependent hydrogenase ABED_RS06810 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABED_RS06810 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_RS06810 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ABED_RS06820 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABED_RS06820 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ABED_RS06830 PF06434 Aconitate hydratase 2 N-terminus ABED_RS06830 PF11791 Aconitate B N-terminal domain ABED_RS06830 PF00330 Aconitase family (aconitate hydratase) ABED_RS06840 PF01590 GAF domain ABED_RS06840 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS06840 PF00563 EAL domain ABED_RS06840 PF00360 Phytochrome region ABED_RS06845 PF01709 Transcriptional regulator ABED_RS06850 PF04333 MlaA lipoprotein ABED_RS06865 PF03641 Possible lysine decarboxylase ABED_RS06870 PF13419 Haloacid dehalogenase-like hydrolase ABED_RS06875 PF08534 Redoxin ABED_RS06885 PF02600 Disulfide bond formation protein DsbB ABED_RS06905 PF07715 TonB-dependent Receptor Plug Domain ABED_RS06905 PF00593 TonB dependent receptor ABED_RS06910 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS06925 PF00999 Sodium/hydrogen exchanger family ABED_RS06925 PF02254 TrkA-N domain ABED_RS06935 PF00464 Serine hydroxymethyltransferase ABED_RS06940 PF12833 Helix-turn-helix domain ABED_RS06940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABED_RS06940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABED_RS06940 PF02805 Metal binding domain of Ada ABED_RS06960 PF00202 Aminotransferase class-III ABED_RS06965 PF03473 MOSC domain ABED_RS06970 PF04055 Radical SAM superfamily ABED_RS06975 PF03099 Biotin/lipoate A/B protein ligase family ABED_RS06975 PF10437 Bacterial lipoate protein ligase C-terminus ABED_RS06980 PF17831 Pyruvate dehydrogenase E1 component middle domain ABED_RS06980 PF00456 Transketolase, thiamine diphosphate binding domain ABED_RS06985 PF00364 Biotin-requiring enzyme ABED_RS06985 PF02817 e3 binding domain ABED_RS06985 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABED_RS06990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABED_RS06990 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_RS06995 PF07685 CobB/CobQ-like glutamine amidotransferase domain ABED_RS07000 PF07715 TonB-dependent Receptor Plug Domain ABED_RS07000 PF07660 Secretin and TonB N terminus short domain ABED_RS07000 PF00593 TonB dependent receptor ABED_RS07005 PF01263 Aldose 1-epimerase ABED_RS07010 PF00905 Penicillin binding protein transpeptidase domain ABED_RS07015 PF00271 Helicase conserved C-terminal domain ABED_RS07015 PF00270 DEAD/DEAH box helicase ABED_RS07020 PF18381 YcaO cyclodehydratase C-terminal domain ABED_RS07020 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ABED_RS07035 PF02203 Tar ligand binding domain homologue ABED_RS07035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS07035 PF00672 HAMP domain ABED_RS07040 PF00075 RNase H ABED_RS07045 PF00682 HMGL-like ABED_RS07060 PF00817 impB/mucB/samB family ABED_RS07060 PF11798 IMS family HHH motif ABED_RS07060 PF11799 impB/mucB/samB family C-terminal domain ABED_RS07065 PF03453 MoeA N-terminal region (domain I and II) ABED_RS07065 PF00994 Probable molybdopterin binding domain ABED_RS07065 PF03454 MoeA C-terminal region (domain IV) ABED_RS07070 PF00266 Aminotransferase class-V ABED_RS07075 PF02634 FdhD/NarQ family ABED_RS07085 PF13247 4Fe-4S dicluster domain ABED_RS07090 PF01568 Molydopterin dinucleotide binding domain ABED_RS07090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_RS07090 PF00384 Molybdopterin oxidoreductase ABED_RS07095 PF00384 Molybdopterin oxidoreductase ABED_RS07095 PF01568 Molydopterin dinucleotide binding domain ABED_RS07095 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_RS07120 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS07120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS07145 PF01841 Transglutaminase-like superfamily ABED_RS07155 PF13247 4Fe-4S dicluster domain ABED_RS07160 PF00384 Molybdopterin oxidoreductase ABED_RS07160 PF01568 Molydopterin dinucleotide binding domain ABED_RS07160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABED_RS07170 PF02769 AIR synthase related protein, C-terminal domain ABED_RS07170 PF00586 AIR synthase related protein, N-terminal domain ABED_RS07225 PF03841 L-seryl-tRNA selenium transferase ABED_RS07230 PF09106 Elongation factor SelB, winged helix ABED_RS07230 PF03144 Elongation factor Tu domain 2 ABED_RS07230 PF09107 Elongation factor SelB, winged helix ABED_RS07230 PF00009 Elongation factor Tu GTP binding domain ABED_RS07230 PF09105 Elongation factor SelB, winged helix ABED_RS07275 PF08447 PAS fold ABED_RS07275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS07275 PF08448 PAS fold ABED_RS07280 PF03358 NADPH-dependent FMN reductase ABED_RS07290 PF01966 HD domain ABED_RS07295 PF00563 EAL domain ABED_RS07295 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS07295 PF08448 PAS fold ABED_RS07300 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ABED_RS07300 PF01243 Pyridoxamine 5'-phosphate oxidase ABED_RS07305 PF00563 EAL domain ABED_RS07305 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS07305 PF03707 Bacterial signalling protein N terminal repeat ABED_RS07310 PF00271 Helicase conserved C-terminal domain ABED_RS07310 PF00270 DEAD/DEAH box helicase ABED_RS07310 PF03880 DbpA RNA binding domain ABED_RS07330 PF00183 Hsp90 protein ABED_RS07335 PF00141 Peroxidase ABED_RS07355 PF04403 Paraquat-inducible protein A ABED_RS07370 PF00563 EAL domain ABED_RS07370 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS07370 PF08448 PAS fold ABED_RS07390 PF04073 Aminoacyl-tRNA editing domain ABED_RS07400 PF08713 DNA alkylation repair enzyme ABED_RS07405 PF03992 Antibiotic biosynthesis monooxygenase ABED_RS07415 PF01965 DJ-1/PfpI family ABED_RS07420 PF05175 Methyltransferase small domain ABED_RS07420 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus ABED_RS07425 PF07715 TonB-dependent Receptor Plug Domain ABED_RS07425 PF00593 TonB dependent receptor ABED_RS07435 PF04542 Sigma-70 region 2 ABED_RS07435 PF08281 Sigma-70, region 4 ABED_RS07440 PF00491 Arginase family ABED_RS07445 PF00682 HMGL-like ABED_RS07445 PF08502 LeuA allosteric (dimerisation) domain ABED_RS07450 PF12833 Helix-turn-helix domain ABED_RS07450 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABED_RS07455 PF00958 GMP synthase C terminal domain ABED_RS07455 PF00117 Glutamine amidotransferase class-I ABED_RS07455 PF03352 Methyladenine glycosylase ABED_RS07455 PF13302 Acetyltransferase (GNAT) domain ABED_RS07455 PF13673 Acetyltransferase (GNAT) domain ABED_RS07460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABED_RS07460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABED_RS07465 PF00924 Mechanosensitive ion channel ABED_RS07470 PF02833 DHHA2 domain ABED_RS07470 PF01368 DHH family ABED_RS07485 PF10415 Fumarase C C-terminus ABED_RS07485 PF00206 Lyase ABED_RS07490 PF01048 Phosphorylase superfamily ABED_RS07495 PF00698 Acyl transferase domain ABED_RS07500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABED_RS07515 PF04052 TolB amino-terminal domain ABED_RS07525 PF02472 Biopolymer transport protein ExbD/TolR ABED_RS07530 PF01618 MotA/TolQ/ExbB proton channel family ABED_RS07535 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ABED_RS07540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_RS07540 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABED_RS07545 PF00231 ATP synthase ABED_RS07550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_RS07550 PF00306 ATP synthase alpha/beta chain, C terminal domain ABED_RS07550 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABED_RS07555 PF00213 ATP synthase delta (OSCP) subunit ABED_RS07560 PF00430 ATP synthase B/B' CF(0) ABED_RS07570 PF17762 HTH domain found in ParB protein ABED_RS07570 PF02195 ParB-like nuclease domain ABED_RS07575 PF13614 AAA domain ABED_RS07590 PF02911 Formyl transferase, C-terminal domain ABED_RS07590 PF00551 Formyl transferase ABED_RS07595 PF00696 Amino acid kinase family ABED_RS07600 PF01018 GTP1/OBG ABED_RS07600 PF01926 50S ribosome-binding GTPase ABED_RS07605 PF01016 Ribosomal L27 protein ABED_RS07610 PF00829 Ribosomal prokaryotic L21 protein ABED_RS07615 PF16730 DnaG-primase C-terminal, helicase-binding domain ABED_RS07615 PF01807 CHC2 zinc finger ABED_RS07615 PF13662 Toprim domain ABED_RS07615 PF08275 DNA primase catalytic core, N-terminal domain ABED_RS07625 PF14622 Ribonuclease-III-like ABED_RS07625 PF00035 Double-stranded RNA binding motif ABED_RS07630 PF01264 Chorismate synthase ABED_RS07640 PF01435 Peptidase family M48 ABED_RS07650 PF00300 Histidine phosphatase superfamily (branch 1) ABED_RS07660 PF10396 GTP-binding protein TrmE N-terminus ABED_RS07660 PF12631 MnmE helical domain ABED_RS07660 PF01926 50S ribosome-binding GTPase ABED_RS07670 PF14849 YidC periplasmic domain ABED_RS07670 PF02096 60Kd inner membrane protein ABED_RS07675 PF01809 Putative membrane protein insertion efficiency factor ABED_RS07685 PF00468 Ribosomal protein L34 ABED_RS07690 PF07724 AAA domain (Cdc48 subfamily) ABED_RS07690 PF00004 ATPase family associated with various cellular activities (AAA) ABED_RS07690 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_RS07690 PF02861 Clp amino terminal domain, pathogenicity island component ABED_RS07690 PF17871 AAA lid domain ABED_RS07695 PF01351 Ribonuclease HII ABED_RS07705 PF03976 Polyphosphate kinase 2 (PPK2) ABED_RS07715 PF01625 Peptide methionine sulfoxide reductase ABED_RS07720 PF01641 SelR domain ABED_RS07725 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABED_RS07740 PF00202 Aminotransferase class-III ABED_RS07740 PF06968 Biotin and Thiamin Synthesis associated domain ABED_RS07740 PF04055 Radical SAM superfamily ABED_RS07745 PF08448 PAS fold ABED_RS07745 PF08447 PAS fold ABED_RS07745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS07750 PF02142 MGS-like domain ABED_RS07750 PF01808 AICARFT/IMPCHase bienzyme ABED_RS07755 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ABED_RS07755 PF02769 AIR synthase related protein, C-terminal domain ABED_RS07755 PF00586 AIR synthase related protein, N-terminal domain ABED_RS07765 PF01476 LysM domain ABED_RS07765 PF08525 Opacity-associated protein A N-terminal motif ABED_RS07765 PF01551 Peptidase family M23 ABED_RS07770 PF01227 GTP cyclohydrolase I ABED_RS07775 PF01544 CorA-like Mg2+ transporter protein ABED_RS07780 PF00482 Type II secretion system (T2SS), protein F ABED_RS07785 PF00437 Type II/IV secretion system protein ABED_RS07800 PF01926 50S ribosome-binding GTPase ABED_RS07800 PF07650 KH domain ABED_RS07810 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABED_RS07810 PF01078 Magnesium chelatase, subunit ChlI ABED_RS07835 PF13361 UvrD-like helicase C-terminal domain ABED_RS07835 PF00580 UvrD/REP helicase N-terminal domain ABED_RS07845 PF13476 AAA domain ABED_RS07885 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABED_RS07885 PF01078 Magnesium chelatase, subunit ChlI ABED_RS07890 PF00672 HAMP domain ABED_RS07890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS07890 PF02203 Tar ligand binding domain homologue ABED_RS07905 PF01327 Polypeptide deformylase ABED_RS07910 PF00574 Clp protease ABED_RS07915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABED_RS07915 PF05698 Bacterial trigger factor protein (TF) C-terminus ABED_RS07915 PF05697 Bacterial trigger factor protein (TF) ABED_RS07920 PF03976 Polyphosphate kinase 2 (PPK2) ABED_RS07925 PF03976 Polyphosphate kinase 2 (PPK2) ABED_RS07930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABED_RS07935 PF16653 Saccharopine dehydrogenase C-terminal domain ABED_RS07935 PF03435 Saccharopine dehydrogenase NADP binding domain ABED_RS07950 PF01053 Cys/Met metabolism PLP-dependent enzyme ABED_RS07955 PF01053 Cys/Met metabolism PLP-dependent enzyme ABED_RS07960 PF00072 Response regulator receiver domain ABED_RS07960 PF00486 Transcriptional regulatory protein, C terminal ABED_RS07965 PF00672 HAMP domain ABED_RS07965 PF02203 Tar ligand binding domain homologue ABED_RS07965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS07975 PF11849 Domain of unknown function (DUF3369) ABED_RS07980 PF00672 HAMP domain ABED_RS07980 PF02203 Tar ligand binding domain homologue ABED_RS07980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS07985 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS07985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS08005 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_RS08015 PF00072 Response regulator receiver domain ABED_RS08015 PF00486 Transcriptional regulatory protein, C terminal ABED_RS08025 PF03824 High-affinity nickel-transport protein ABED_RS08040 PF06965 Na+/H+ antiporter 1 ABED_RS08045 PF03150 Di-haem cytochrome c peroxidase ABED_RS08050 PF04116 Fatty acid hydroxylase superfamily ABED_RS08075 PF00137 ATP synthase subunit C ABED_RS08100 PF08543 Phosphomethylpyrimidine kinase ABED_RS08105 PF00171 Aldehyde dehydrogenase family ABED_RS08120 PF12801 4Fe-4S binding domain ABED_RS08120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ABED_RS08120 PF13746 4Fe-4S dicluster domain ABED_RS08125 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS08125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS08130 PF00072 Response regulator receiver domain ABED_RS08130 PF12833 Helix-turn-helix domain ABED_RS08140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABED_RS08140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABED_RS08140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABED_RS08140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABED_RS08145 PF00795 Carbon-nitrogen hydrolase ABED_RS08165 PF00258 Flavodoxin ABED_RS08170 PF01475 Ferric uptake regulator family ABED_RS08180 PF04377 Arginine-tRNA-protein transferase, C terminus ABED_RS08180 PF04376 Arginine-tRNA-protein transferase, N terminus ABED_RS08185 PF00290 Tryptophan synthase alpha chain ABED_RS08190 PF02548 Ketopantoate hydroxymethyltransferase ABED_RS08195 PF17864 RuvB AAA lid domain ABED_RS08195 PF05491 RuvB C-terminal winged helix domain ABED_RS08195 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABED_RS08200 PF01594 AI-2E family transporter ABED_RS08240 PF04055 Radical SAM superfamily ABED_RS08245 PF01208 Uroporphyrinogen decarboxylase (URO-D) ABED_RS08255 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABED_RS08255 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABED_RS08260 PF03989 DNA gyrase C-terminal domain, beta-propeller ABED_RS08260 PF00521 DNA gyrase/topoisomerase IV, subunit A ABED_RS08270 PF01960 ArgJ family ABED_RS08280 PF00830 Ribosomal L28 family ABED_RS08290 PF08645 Polynucleotide kinase 3 phosphatase ABED_RS08295 PF01370 NAD dependent epimerase/dehydratase family ABED_RS08300 PF01467 Cytidylyltransferase-like ABED_RS08300 PF00294 pfkB family carbohydrate kinase ABED_RS08305 PF13580 SIS domain ABED_RS08310 PF00884 Sulfatase ABED_RS08315 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_RS08325 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_RS08330 PF00535 Glycosyl transferase family 2 ABED_RS08345 PF13439 Glycosyltransferase Family 4 ABED_RS08345 PF00534 Glycosyl transferases group 1 ABED_RS08365 PF03062 MBOAT, membrane-bound O-acyltransferase family ABED_RS08375 PF03062 MBOAT, membrane-bound O-acyltransferase family ABED_RS08385 PF03062 MBOAT, membrane-bound O-acyltransferase family ABED_RS08405 PF16363 GDP-mannose 4,6 dehydratase ABED_RS08410 PF04321 RmlD substrate binding domain ABED_RS08415 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ABED_RS08420 PF00483 Nucleotidyl transferase ABED_RS08440 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ABED_RS08450 PF00037 4Fe-4S binding domain ABED_RS08460 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_RS08460 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABED_RS08465 PF01645 Conserved region in glutamate synthase ABED_RS08465 PF04898 Glutamate synthase central domain ABED_RS08465 PF01493 GXGXG motif ABED_RS08465 PF00310 Glutamine amidotransferases class-II ABED_RS08480 PF02203 Tar ligand binding domain homologue ABED_RS08480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS08480 PF00672 HAMP domain ABED_RS08485 PF00672 HAMP domain ABED_RS08485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS08485 PF02203 Tar ligand binding domain homologue ABED_RS08490 PF03958 Bacterial type II/III secretion system short domain ABED_RS08490 PF00263 Bacterial type II and III secretion system protein ABED_RS08495 PF01205 Uncharacterized protein family UPF0029 ABED_RS08495 PF09186 Domain of unknown function (DUF1949) ABED_RS08500 PF01479 S4 domain ABED_RS08500 PF01728 FtsJ-like methyltransferase ABED_RS08505 PF01687 Riboflavin kinase ABED_RS08505 PF06574 FAD synthetase ABED_RS08510 PF13649 Methyltransferase domain ABED_RS08515 PF00578 AhpC/TSA family ABED_RS08525 PF01565 FAD binding domain ABED_RS08525 PF02913 FAD linked oxidases, C-terminal domain ABED_RS08530 PF03631 Virulence factor BrkB ABED_RS08540 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABED_RS08550 PF00793 DAHP synthetase I family ABED_RS08555 PF00885 6,7-dimethyl-8-ribityllumazine synthase ABED_RS08560 PF01029 NusB family ABED_RS08565 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ABED_RS08580 PF00005 ABC transporter ABED_RS08590 PF04023 FeoA domain ABED_RS08595 PF07670 Nucleoside recognition ABED_RS08595 PF02421 Ferrous iron transport protein B ABED_RS08595 PF07664 Ferrous iron transport protein B C terminus ABED_RS08595 PF04023 FeoA domain ABED_RS08595 PF17910 FeoB cytosolic helical domain ABED_RS08620 PF00403 Heavy-metal-associated domain ABED_RS08625 PF01022 Bacterial regulatory protein, arsR family ABED_RS08630 PF07715 TonB-dependent Receptor Plug Domain ABED_RS08630 PF00593 TonB dependent receptor ABED_RS08640 PF00873 AcrB/AcrD/AcrF family ABED_RS08655 PF00313 'Cold-shock' DNA-binding domain ABED_RS08660 PF12833 Helix-turn-helix domain ABED_RS08660 PF00072 Response regulator receiver domain ABED_RS08665 PF00512 His Kinase A (phospho-acceptor) domain ABED_RS08665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABED_RS08665 PF00989 PAS fold ABED_RS08695 PF03594 Benzoate membrane transport protein ABED_RS08710 PF00623 RNA polymerase Rpb1, domain 2 ABED_RS08710 PF04983 RNA polymerase Rpb1, domain 3 ABED_RS08710 PF05000 RNA polymerase Rpb1, domain 4 ABED_RS08710 PF04997 RNA polymerase Rpb1, domain 1 ABED_RS08710 PF04998 RNA polymerase Rpb1, domain 5 ABED_RS08715 PF04563 RNA polymerase beta subunit ABED_RS08715 PF00562 RNA polymerase Rpb2, domain 6 ABED_RS08715 PF04560 RNA polymerase Rpb2, domain 7 ABED_RS08715 PF04561 RNA polymerase Rpb2, domain 2 ABED_RS08715 PF04565 RNA polymerase Rpb2, domain 3 ABED_RS08715 PF10385 RNA polymerase beta subunit external 1 domain ABED_RS08720 PF16320 Ribosomal protein L7/L12 dimerisation domain ABED_RS08720 PF00542 Ribosomal protein L7/L12 C-terminal domain ABED_RS08725 PF00466 Ribosomal protein L10 ABED_RS08730 PF00687 Ribosomal protein L1p/L10e family ABED_RS08735 PF00298 Ribosomal protein L11, RNA binding domain ABED_RS08735 PF03946 Ribosomal protein L11, N-terminal domain ABED_RS08740 PF02357 Transcription termination factor nusG ABED_RS08755 PF00471 Ribosomal protein L33 ABED_RS08760 PF03143 Elongation factor Tu C-terminal domain ABED_RS08760 PF03144 Elongation factor Tu domain 2 ABED_RS08760 PF00009 Elongation factor Tu GTP binding domain ABED_RS08785 PF08245 Mur ligase middle domain ABED_RS08790 PF00953 Glycosyl transferase family 4 ABED_RS08790 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ABED_RS08795 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ABED_RS08795 PF01676 Metalloenzyme superfamily ABED_RS08800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABED_RS08800 PF00005 ABC transporter ABED_RS08805 PF00912 Transglycosylase ABED_RS08805 PF00905 Penicillin binding protein transpeptidase domain ABED_RS08810 PF00120 Glutamine synthetase, catalytic domain ABED_RS08810 PF03951 Glutamine synthetase, beta-Grasp domain ABED_RS08820 PF02391 MoaE protein ABED_RS08830 PF02621 Menaquinone biosynthesis ABED_RS08835 PF02673 Bacitracin resistance protein BacA ABED_RS08840 PF03033 Glycosyltransferase family 28 N-terminal domain ABED_RS08840 PF04101 Glycosyltransferase family 28 C-terminal domain ABED_RS08845 PF01098 Cell cycle protein ABED_RS08850 PF00905 Penicillin binding protein transpeptidase domain ABED_RS08850 PF03717 Penicillin-binding Protein dimerisation domain ABED_RS08855 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABED_RS08895 PF07724 AAA domain (Cdc48 subfamily) ABED_RS08895 PF17871 AAA lid domain ABED_RS08895 PF02861 Clp amino terminal domain, pathogenicity island component ABED_RS08895 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_RS08895 PF00004 ATPase family associated with various cellular activities (AAA) ABED_RS08900 PF02617 ATP-dependent Clp protease adaptor protein ClpS ABED_RS08915 PF13193 AMP-binding enzyme C-terminal domain ABED_RS08915 PF00501 AMP-binding enzyme ABED_RS08920 PF01575 MaoC like domain ABED_RS08940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS08940 PF02203 Tar ligand binding domain homologue ABED_RS08940 PF00672 HAMP domain ABED_RS08945 PF02040 Arsenical pump membrane protein ABED_RS08965 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABED_RS08970 PF01613 Flavin reductase like domain ABED_RS08980 PF00771 FHIPEP family ABED_RS08985 PF00669 Bacterial flagellin N-terminal helical region ABED_RS08985 PF00700 Bacterial flagellin C-terminal helical region ABED_RS08990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABED_RS08990 PF18269 T3SS EscN ATPase C-terminal domain ABED_RS09000 PF01312 FlhB HrpN YscU SpaS Family ABED_RS09015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_RS09015 PF00460 Flagella basal body rod protein ABED_RS09020 PF02049 Flagellar hook-basal body complex protein FliE ABED_RS09030 PF10609 NUBPL iron-transfer P-loop NTPase ABED_RS09035 PF00448 SRP54-type protein, GTPase domain ABED_RS09055 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABED_RS09075 PF07559 Flagellar basal body protein FlaE ABED_RS09075 PF00460 Flagella basal body rod protein ABED_RS09075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_RS09075 PF07196 Flagellin hook IN motif ABED_RS09090 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABED_RS09100 PF14842 FliG N-terminal domain ABED_RS09100 PF14841 FliG middle domain ABED_RS09100 PF01706 FliG C-terminal domain ABED_RS09105 PF08345 Flagellar M-ring protein C-terminal ABED_RS09105 PF01514 Secretory protein of YscJ/FliF family ABED_RS09110 PF00460 Flagella basal body rod protein ABED_RS09115 PF00460 Flagella basal body rod protein ABED_RS09115 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_RS09125 PF00072 Response regulator receiver domain ABED_RS09130 PF00460 Flagella basal body rod protein ABED_RS09130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABED_RS09145 PF01782 RimM N-terminal domain ABED_RS09155 PF00886 Ribosomal protein S16 ABED_RS09160 PF00448 SRP54-type protein, GTPase domain ABED_RS09160 PF02978 Signal peptide binding domain ABED_RS09160 PF02881 SRP54-type protein, helical bundle domain ABED_RS09165 PF00849 RNA pseudouridylate synthase ABED_RS09170 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ABED_RS09170 PF00534 Glycosyl transferases group 1 ABED_RS09180 PF01784 NIF3 (NGG1p interacting factor 3) ABED_RS09185 PF02091 Glycyl-tRNA synthetase alpha subunit ABED_RS09195 PF00731 AIR carboxylase ABED_RS09205 PF01136 Peptidase family U32 ABED_RS09210 PF17200 Single Cache domain 2 ABED_RS09210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS09210 PF00672 HAMP domain ABED_RS09215 PF13476 AAA domain ABED_RS09220 PF01513 ATP-NAD kinase ABED_RS09225 PF14492 Elongation Factor G, domain II ABED_RS09225 PF03764 Elongation factor G, domain IV ABED_RS09225 PF00009 Elongation factor Tu GTP binding domain ABED_RS09225 PF03144 Elongation factor Tu domain 2 ABED_RS09225 PF00679 Elongation factor G C-terminus ABED_RS09230 PF00177 Ribosomal protein S7p/S5e ABED_RS09235 PF00164 Ribosomal protein S12/S23 ABED_RS09245 PF07690 Major Facilitator Superfamily ABED_RS09250 PF07715 TonB-dependent Receptor Plug Domain ABED_RS09250 PF00593 TonB dependent receptor ABED_RS09265 PF00005 ABC transporter ABED_RS09270 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS09310 PF00117 Glutamine amidotransferase class-I ABED_RS09315 PF00440 Bacterial regulatory proteins, tetR family ABED_RS09320 PF00106 short chain dehydrogenase ABED_RS09325 PF12706 Beta-lactamase superfamily domain ABED_RS09330 PF13416 Bacterial extracellular solute-binding protein ABED_RS09335 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS09340 PF08402 TOBE domain ABED_RS09340 PF00005 ABC transporter ABED_RS09350 PF07715 TonB-dependent Receptor Plug Domain ABED_RS09350 PF00593 TonB dependent receptor ABED_RS09370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABED_RS09370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABED_RS09390 PF16921 Tex protein YqgF-like domain ABED_RS09390 PF17674 HHH domain ABED_RS09390 PF00575 S1 RNA binding domain ABED_RS09390 PF09371 Tex-like protein N-terminal domain ABED_RS09400 PF01042 Endoribonuclease L-PSP ABED_RS09415 PF00155 Aminotransferase class I and II ABED_RS09425 PF09335 SNARE associated Golgi protein ABED_RS09430 PF01245 Ribosomal protein L19 ABED_RS09435 PF01746 tRNA (Guanine-1)-methyltransferase ABED_RS09445 PF08267 Cobalamin-independent synthase, N-terminal domain ABED_RS09445 PF01717 Cobalamin-independent synthase, Catalytic domain ABED_RS09450 PF13291 ACT domain ABED_RS09450 PF00291 Pyridoxal-phosphate dependent enzyme ABED_RS09455 PF00119 ATP synthase A chain ABED_RS09465 PF05538 Campylobacter major outer membrane protein ABED_RS09475 PF02660 Glycerol-3-phosphate acyltransferase ABED_RS09480 PF02445 Quinolinate synthetase A protein ABED_RS09485 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABED_RS09485 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABED_RS09500 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ABED_RS09510 PF00288 GHMP kinases N terminal domain ABED_RS09510 PF08544 GHMP kinases C terminal ABED_RS09520 PF11987 Translation-initiation factor 2 ABED_RS09520 PF04760 Translation initiation factor IF-2, N-terminal region ABED_RS09520 PF00009 Elongation factor Tu GTP binding domain ABED_RS09525 PF02033 Ribosome-binding factor A ABED_RS09530 PF02576 RimP N-terminal domain ABED_RS09535 PF01872 RibD C-terminal domain ABED_RS09535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABED_RS09540 PF01132 Elongation factor P (EF-P) OB domain ABED_RS09540 PF08207 Elongation factor P (EF-P) KOW-like domain ABED_RS09540 PF09285 Elongation factor P, C-terminal ABED_RS09545 PF01842 ACT domain ABED_RS09545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABED_RS09545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABED_RS09550 PF00575 S1 RNA binding domain ABED_RS09555 PF02401 LytB protein ABED_RS09560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABED_RS09565 PF03484 tRNA synthetase B5 domain ABED_RS09565 PF03147 Ferredoxin-fold anticodon binding domain ABED_RS09565 PF01588 Putative tRNA binding domain ABED_RS09565 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ABED_RS09570 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ABED_RS09570 PF01409 tRNA synthetases class II core domain (F) ABED_RS09575 PF01230 HIT domain ABED_RS09580 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABED_RS09585 PF00109 Beta-ketoacyl synthase, N-terminal domain ABED_RS09585 PF02801 Beta-ketoacyl synthase, C-terminal domain ABED_RS09590 PF00550 Phosphopantetheine attachment site ABED_RS09600 PF04055 Radical SAM superfamily ABED_RS09610 PF06508 Queuosine biosynthesis protein QueC ABED_RS09620 PF04452 RNA methyltransferase ABED_RS09630 PF00032 Cytochrome b(C-terminal)/b6/petD ABED_RS09630 PF00033 Cytochrome b/b6/petB ABED_RS09635 PF00355 Rieske [2Fe-2S] domain ABED_RS09640 PF00291 Pyridoxal-phosphate dependent enzyme ABED_RS09645 PF00696 Amino acid kinase family ABED_RS09650 PF00580 UvrD/REP helicase N-terminal domain ABED_RS09650 PF13361 UvrD-like helicase C-terminal domain ABED_RS09660 PF00472 RF-1 domain ABED_RS09660 PF03462 PCRF domain ABED_RS09665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABED_RS09690 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ABED_RS09690 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABED_RS09705 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABED_RS09710 PF01668 SmpB protein ABED_RS09715 PF00288 GHMP kinases N terminal domain ABED_RS09720 PF01509 TruB family pseudouridylate synthase (N terminal domain) ABED_RS09725 PF00580 UvrD/REP helicase N-terminal domain ABED_RS09725 PF13361 UvrD-like helicase C-terminal domain ABED_RS09730 PF03466 LysR substrate binding domain ABED_RS09730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABED_RS09735 PF04055 Radical SAM superfamily ABED_RS09735 PF16199 Radical_SAM C-terminal domain ABED_RS09740 PF00156 Phosphoribosyl transferase domain ABED_RS09740 PF13537 Glutamine amidotransferase domain ABED_RS09745 PF01113 Dihydrodipicolinate reductase, N-terminus ABED_RS09745 PF05173 Dihydrodipicolinate reductase, C-terminus ABED_RS09750 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_RS09755 PF00085 Thioredoxin ABED_RS09760 PF02272 DHHA1 domain ABED_RS09760 PF01411 tRNA synthetases class II (A) ABED_RS09760 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABED_RS09790 PF00072 Response regulator receiver domain ABED_RS09790 PF00486 Transcriptional regulatory protein, C terminal ABED_RS09795 PF17820 PDZ domain ABED_RS09795 PF13180 PDZ domain ABED_RS09800 PF00920 Dehydratase family ABED_RS09830 PF00005 ABC transporter ABED_RS09830 PF09383 NIL domain ABED_RS09845 PF01142 tRNA pseudouridine synthase D (TruD) ABED_RS09850 PF15437 Plasminogen-binding protein pgbA C-terminal ABED_RS09860 PF13180 PDZ domain ABED_RS09860 PF03572 Peptidase family S41 ABED_RS09865 PF01259 SAICAR synthetase ABED_RS09870 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ABED_RS09885 PF01553 Acyltransferase ABED_RS09890 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ABED_RS09895 PF02416 mttA/Hcf106 family ABED_RS09900 PF02416 mttA/Hcf106 family ABED_RS09905 PF00750 tRNA synthetases class I (R) ABED_RS09905 PF05746 DALR anticodon binding domain ABED_RS09905 PF03485 Arginyl tRNA synthetase N terminal domain ABED_RS09915 PF01467 Cytidylyltransferase-like ABED_RS09920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABED_RS09920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABED_RS09925 PF00162 Phosphoglycerate kinase ABED_RS09930 PF00121 Triosephosphate isomerase ABED_RS09940 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABED_RS09940 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABED_RS09945 PF01842 ACT domain ABED_RS09945 PF01817 Chorismate mutase type II ABED_RS09945 PF00800 Prephenate dehydratase ABED_RS09950 PF00155 Aminotransferase class I and II ABED_RS09955 PF02780 Transketolase, C-terminal domain ABED_RS09955 PF02779 Transketolase, pyrimidine binding domain ABED_RS09955 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABED_RS09960 PF03150 Di-haem cytochrome c peroxidase ABED_RS09960 PF00034 Cytochrome c ABED_RS09965 PF02545 Maf-like protein ABED_RS09980 PF00877 NlpC/P60 family ABED_RS09995 PF03167 Uracil DNA glycosylase superfamily ABED_RS10000 PF00171 Aldehyde dehydrogenase family ABED_RS10005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABED_RS10005 PF00205 Thiamine pyrophosphate enzyme, central domain ABED_RS10005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABED_RS10010 PF04011 LemA family ABED_RS10025 PF13419 Haloacid dehalogenase-like hydrolase ABED_RS10030 PF00210 Ferritin-like domain ABED_RS10045 PF07690 Major Facilitator Superfamily ABED_RS10055 PF00072 Response regulator receiver domain ABED_RS10055 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS10060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_RS10060 PF00529 HlyD membrane-fusion protein of T1SS ABED_RS10065 PF00873 AcrB/AcrD/AcrF family ABED_RS10070 PF02321 Outer membrane efflux protein ABED_RS10075 PF00593 TonB dependent receptor ABED_RS10075 PF07715 TonB-dependent Receptor Plug Domain ABED_RS10085 PF04542 Sigma-70 region 2 ABED_RS10085 PF08281 Sigma-70, region 4 ABED_RS10105 PF01053 Cys/Met metabolism PLP-dependent enzyme ABED_RS10110 PF02082 Transcriptional regulator ABED_RS10115 PF00291 Pyridoxal-phosphate dependent enzyme ABED_RS10125 PF01507 Phosphoadenosine phosphosulfate reductase family ABED_RS10130 PF01507 Phosphoadenosine phosphosulfate reductase family ABED_RS10135 PF00009 Elongation factor Tu GTP binding domain ABED_RS10140 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABED_RS10140 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABED_RS10150 PF02347 Glycine cleavage system P-protein ABED_RS10185 PF00939 Sodium:sulfate symporter transmembrane region ABED_RS10195 PF11412 Disulphide bond corrector protein DsbC ABED_RS10195 PF02683 Cytochrome C biogenesis protein transmembrane region ABED_RS10200 PF18030 RimK PreATP-grasp domain ABED_RS10200 PF08443 RimK-like ATP-grasp domain ABED_RS10215 PF00563 EAL domain ABED_RS10215 PF08495 FIST N domain ABED_RS10215 PF10442 FIST C domain ABED_RS10215 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS10220 PF02666 Phosphatidylserine decarboxylase ABED_RS10230 PF06725 3D domain ABED_RS10230 PF03562 MltA specific insert domain ABED_RS10235 PF00012 Hsp70 protein ABED_RS10240 PF01025 GrpE ABED_RS10245 PF01628 HrcA protein C terminal domain ABED_RS10255 PF01416 tRNA pseudouridine synthase ABED_RS10270 PF01255 Putative undecaprenyl diphosphate synthase ABED_RS10275 PF04127 DNA / pantothenate metabolism flavoprotein ABED_RS10275 PF02441 Flavoprotein ABED_RS10280 PF12804 MobA-like NTP transferase domain ABED_RS10280 PF14602 Hexapeptide repeat of succinyl-transferase ABED_RS10290 PF08148 DSHCT (NUC185) domain ABED_RS10290 PF00270 DEAD/DEAH box helicase ABED_RS10290 PF00271 Helicase conserved C-terminal domain ABED_RS10295 PF05958 tRNA (Uracil-5-)-methyltransferase ABED_RS10300 PF00293 NUDIX domain ABED_RS10315 PF06508 Queuosine biosynthesis protein QueC ABED_RS10360 PF00665 Integrase core domain ABED_RS10380 PF02899 Phage integrase, N-terminal SAM-like domain ABED_RS10380 PF00589 Phage integrase family ABED_RS10390 PF01134 Glucose inhibited division protein A ABED_RS10390 PF13932 GidA associated domain ABED_RS10395 PF00677 Lumazine binding domain ABED_RS10410 PF07724 AAA domain (Cdc48 subfamily) ABED_RS10410 PF10431 C-terminal, D2-small domain, of ClpB protein ABED_RS10410 PF06689 ClpX C4-type zinc finger ABED_RS10415 PF00132 Bacterial transferase hexapeptide (six repeats) ABED_RS10415 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABED_RS10420 PF07977 FabA-like domain ABED_RS10425 PF02684 Lipid-A-disaccharide synthetase ABED_RS10430 PF02677 Epoxyqueuosine reductase QueH ABED_RS10440 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABED_RS10445 PF01261 Xylose isomerase-like TIM barrel ABED_RS10450 PF02321 Outer membrane efflux protein ABED_RS10455 PF00873 AcrB/AcrD/AcrF family ABED_RS10460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABED_RS10460 PF00529 HlyD membrane-fusion protein of T1SS ABED_RS10470 PF07690 Major Facilitator Superfamily ABED_RS10475 PF01740 STAS domain ABED_RS10475 PF00916 Sulfate permease family ABED_RS10495 PF16450 Proteasomal ATPase OB C-terminal domain ABED_RS10495 PF00004 ATPase family associated with various cellular activities (AAA) ABED_RS10495 PF17758 Proteasomal ATPase OB N-terminal domain ABED_RS10500 PF08308 PEGA domain ABED_RS10500 PF03781 Sulfatase-modifying factor enzyme 1 ABED_RS10505 PF02621 Menaquinone biosynthesis ABED_RS10510 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ABED_RS10515 PF13368 Topoisomerase C-terminal repeat ABED_RS10515 PF01751 Toprim domain ABED_RS10515 PF01131 DNA topoisomerase ABED_RS10525 PF04055 Radical SAM superfamily ABED_RS10525 PF06968 Biotin and Thiamin Synthesis associated domain ABED_RS10540 PF03952 Enolase, N-terminal domain ABED_RS10540 PF00113 Enolase, C-terminal TIM barrel domain ABED_RS10545 PF00154 recA bacterial DNA recombination protein ABED_RS10555 PF02719 Polysaccharide biosynthesis protein ABED_RS10560 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABED_RS10565 PF02348 Cytidylyltransferase ABED_RS10570 PF03102 NeuB family ABED_RS10570 PF08666 SAF domain ABED_RS10590 PF02222 ATP-grasp domain ABED_RS10610 PF00669 Bacterial flagellin N-terminal helical region ABED_RS10610 PF07196 Flagellin hook IN motif ABED_RS10610 PF00700 Bacterial flagellin C-terminal helical region ABED_RS10615 PF00669 Bacterial flagellin N-terminal helical region ABED_RS10615 PF00700 Bacterial flagellin C-terminal helical region ABED_RS10615 PF07196 Flagellin hook IN motif ABED_RS10620 PF12801 4Fe-4S binding domain ABED_RS10620 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ABED_RS10620 PF13746 4Fe-4S dicluster domain ABED_RS10625 PF06418 CTP synthase N-terminus ABED_RS10625 PF00117 Glutamine amidotransferase class-I ABED_RS10630 PF17768 RecJ OB domain ABED_RS10630 PF01368 DHH family ABED_RS10630 PF02272 DHHA1 domain ABED_RS10655 PF14579 Helix-hairpin-helix motif ABED_RS10655 PF02811 PHP domain ABED_RS10655 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABED_RS10655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABED_RS10660 PF01975 Survival protein SurE ABED_RS10675 PF01967 MoaC family ABED_RS10680 PF01165 Ribosomal protein S21 ABED_RS10710 PF01027 Inhibitor of apoptosis-promoting Bax1 ABED_RS10715 PF17792 ThiD2 family ABED_RS10715 PF02581 Thiamine monophosphate synthase ABED_RS10725 PF03840 Preprotein translocase SecG subunit ABED_RS10730 PF01765 Ribosome recycling factor ABED_RS10735 PF00156 Phosphoribosyl transferase domain ABED_RS10750 PF01544 CorA-like Mg2+ transporter protein ABED_RS10755 PF03883 Peroxide stress protein YaaA ABED_RS10785 PF02796 Helix-turn-helix domain of resolvase ABED_RS10785 PF00239 Resolvase, N terminal domain ABED_RS10790 PF03883 Peroxide stress protein YaaA ABED_RS10810 PF03883 Peroxide stress protein YaaA ABED_RS10825 PF00149 Calcineurin-like phosphoesterase ABED_RS10830 PF00011 Hsp20/alpha crystallin family ABED_RS10835 PF01814 Hemerythrin HHE cation binding domain ABED_RS10840 PF00672 HAMP domain ABED_RS10840 PF02743 Cache domain ABED_RS10840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABED_RS10845 PF00581 Rhodanese-like domain ABED_RS10845 PF00899 ThiF family ABED_RS10855 PF14403 Circularly permuted ATP-grasp type 2 ABED_RS10860 PF08379 Bacterial transglutaminase-like N-terminal region ABED_RS10860 PF01841 Transglutaminase-like superfamily ABED_RS10865 PF00005 ABC transporter ABED_RS10865 PF17850 CysA C-terminal regulatory domain ABED_RS10865 PF12857 TOBE-like domain ABED_RS10870 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS10875 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS10880 PF00291 Pyridoxal-phosphate dependent enzyme ABED_RS10885 PF10442 FIST C domain ABED_RS10885 PF08495 FIST N domain ABED_RS10885 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS10885 PF00563 EAL domain ABED_RS10890 PF02597 ThiS family ABED_RS10900 PF00291 Pyridoxal-phosphate dependent enzyme ABED_RS10905 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS10910 PF00005 ABC transporter ABED_RS10920 PF00296 Luciferase-like monooxygenase ABED_RS10925 PF09084 NMT1/THI5 like ABED_RS10935 PF00005 ABC transporter ABED_RS10940 PF00528 Binding-protein-dependent transport system inner membrane component ABED_RS10945 PF00296 Luciferase-like monooxygenase ABED_RS10950 PF09084 NMT1/THI5 like ABED_RS10975 PF14403 Circularly permuted ATP-grasp type 2 ABED_RS10980 PF00009 Elongation factor Tu GTP binding domain ABED_RS10980 PF03144 Elongation factor Tu domain 2 ABED_RS10980 PF00679 Elongation factor G C-terminus ABED_RS10985 PF04143 Sulphur transport ABED_RS10990 PF01206 Sulfurtransferase TusA ABED_RS11010 PF00593 TonB dependent receptor ABED_RS11010 PF07715 TonB-dependent Receptor Plug Domain ABED_RS11025 PF08448 PAS fold ABED_RS11025 PF00990 Diguanylate cyclase, GGDEF domain ABED_RS11030 PF08019 Phosphoethanolamine transferase EptA/EptB ABED_RS11030 PF00884 Sulfatase ABED_RS11040 PF01219 Prokaryotic diacylglycerol kinase ABED_RS11070 PF00486 Transcriptional regulatory protein, C terminal ABED_RS11070 PF00072 Response regulator receiver domain ABED_RS11080 PF08241 Methyltransferase domain ABED_RS11085 PF12833 Helix-turn-helix domain ABED_RS11090 PF11849 Domain of unknown function (DUF3369) ABED_RS11095 PF02511 Thymidylate synthase complementing protein ABED_RS11110 PF02911 Formyl transferase, C-terminal domain ABED_RS11110 PF00551 Formyl transferase ABED_RS11115 PF02075 Crossover junction endodeoxyribonuclease RuvC