locus-tag	class	description
FFA29_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
FFA29_RS00010	COG0592	DNA-directed DNA polymerase activity
FFA29_RS00015	COG0187	DNA topoisomerase II activity
FFA29_RS00020	COG0492	ferredoxin-NADP+ reductase activity
FFA29_RS00025	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
FFA29_RS00035	COG1238	metal cluster binding
FFA29_RS00040	COG0500	methyltransferase
FFA29_RS00045	COG3842	ATPase activity
FFA29_RS00075	COG2249	NAD(P)H dehydrogenase (quinone) activity
FFA29_RS00080	COG1733	regulation of RNA biosynthetic process
FFA29_RS00100	COG0564	pseudouridine synthase activity
FFA29_RS00105	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FFA29_RS00110	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FFA29_RS00115	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FFA29_RS00145	COG0604	alcohol dehydrogenase
FFA29_RS00150	COG1733	regulation of RNA biosynthetic process
FFA29_RS00155	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
FFA29_RS00160	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
FFA29_RS00175	COG1620	l-lactate permease
FFA29_RS00180	COG0745	RESPONSE REGULATOR receiver
FFA29_RS00185	COG3852	Histidine kinase
FFA29_RS00190	COG1556	Lactate utilization protein
FFA29_RS00195	COG1139	Iron-sulfur cluster binding protein
FFA29_RS00200	COG0247	lactate metabolic process
FFA29_RS00205	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FFA29_RS00210	COG0511	ligase activity, forming carbon-carbon bonds
FFA29_RS00215	COG0439	Biotin carboxylase
FFA29_RS00220	COG0513	Belongs to the DEAD box helicase family
FFA29_RS00225	COG0306	phosphate transporter
FFA29_RS00235	COG0367	asparagine synthase
FFA29_RS00245	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
FFA29_RS00250	COG1981	membrane
FFA29_RS00255	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
FFA29_RS00255	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FFA29_RS00260	COG1187	pseudouridine synthase activity
FFA29_RS00265	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
FFA29_RS00265	COG0517	IMP dehydrogenase activity
FFA29_RS00270	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
FFA29_RS00275	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
FFA29_RS00280	COG0107	imidazoleglycerol-phosphate synthase activity
FFA29_RS00295	COG0820	rRNA (adenine-C2-)-methyltransferase activity
FFA29_RS00300	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FFA29_RS00305	COG0724	RNA recognition motif
FFA29_RS00310	COG0745	RESPONSE REGULATOR receiver
FFA29_RS00315	COG0642	Histidine kinase
FFA29_RS00335	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FFA29_RS00375	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
FFA29_RS00380	COG0291	Belongs to the bacterial ribosomal protein bL35 family
FFA29_RS00385	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
FFA29_RS00400	COG0446	pyridine nucleotide-disulphide oxidoreductase
FFA29_RS00405	COG0746	molybdenum cofactor guanylyltransferase activity
FFA29_RS00410	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FFA29_RS00425	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
FFA29_RS00430	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FFA29_RS00435	COG0268	Binds directly to 16S ribosomal RNA
FFA29_RS00440	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
FFA29_RS00450	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FFA29_RS00455	COG4943	cyclic-guanylate-specific phosphodiesterase activity
FFA29_RS00460	COG0573	inorganic phosphate transmembrane transporter activity
FFA29_RS00465	COG0581	inorganic phosphate transmembrane transporter activity
FFA29_RS00470	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FFA29_RS00475	COG0704	Plays a role in the regulation of phosphate uptake
FFA29_RS00485	COG0745	RESPONSE REGULATOR receiver
FFA29_RS00490	COG2205	protein histidine kinase activity
FFA29_RS00495	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
FFA29_RS00500	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
FFA29_RS00510	COG0546	phosphoglycolate phosphatase activity
FFA29_RS00530	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FFA29_RS00535	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FFA29_RS00550	COG1854	S-ribosylhomocysteine lyase activity
FFA29_RS00565	COG1686	Belongs to the peptidase S11 family
FFA29_RS00580	COG1410	methionine synthase
FFA29_RS00580	COG0646	methionine synthase
FFA29_RS00600	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
FFA29_RS00600	COG0140	phosphoribosyl-ATP diphosphatase activity
FFA29_RS00610	COG0489	protein tyrosine kinase activity
FFA29_RS00615	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
FFA29_RS00625	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
FFA29_RS00625	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
FFA29_RS00635	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FFA29_RS00640	COG0505	Belongs to the CarA family
FFA29_RS00650	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
FFA29_RS00655	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
FFA29_RS00660	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FFA29_RS00665	COG2353	YceI-like domain
FFA29_RS00670	COG1846	Transcriptional regulator
FFA29_RS00675	COG2353	YceI-like domain
FFA29_RS00695	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FFA29_RS00700	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
FFA29_RS00705	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
FFA29_RS00710	COG0237	dephospho-CoA kinase activity
FFA29_RS00715	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
FFA29_RS00720	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
FFA29_RS00725	COG0456	acetyltransferase
FFA29_RS00750	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
FFA29_RS00755	COG0254	rRNA binding
FFA29_RS00760	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
FFA29_RS00775	COG0436	Aminotransferase
FFA29_RS00780	COG0460	homoserine dehydrogenase
FFA29_RS00785	COG1335	isochorismatase
FFA29_RS00790	COG0789	Transcriptional regulator
FFA29_RS00810	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FFA29_RS00830	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FFA29_RS00845	COG1131	(ABC) transporter
FFA29_RS00870	COG1028	Short-chain dehydrogenase reductase Sdr
FFA29_RS00875	COG2986	histidine ammonia-lyase
FFA29_RS00895	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FFA29_RS00900	COG2081	HI0933 family
FFA29_RS00905	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FFA29_RS00925	COG0575	Belongs to the CDS family
FFA29_RS00930	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
FFA29_RS00945	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
FFA29_RS00955	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
FFA29_RS00955	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FFA29_RS00960	COG1324	tolerance protein
FFA29_RS00965	COG2022	thiamine diphosphate biosynthetic process
FFA29_RS01030	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FFA29_RS01040	COG1346	cytolysis
FFA29_RS01050	COG3766	membrane
FFA29_RS01055	COG1301	dicarboxylic acid transport
FFA29_RS01075	COG4589	Belongs to the CDS family
FFA29_RS01085	COG0318	PFAM AMP-dependent synthetase and ligase
FFA29_RS01085	COG0204	Acyl-transferase
FFA29_RS01090	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
FFA29_RS01105	COG0666	response to abiotic stimulus
FFA29_RS01115	COG0418	dihydroorotase activity
FFA29_RS01125	COG1706	bacterial-type flagellum-dependent cell motility
FFA29_RS01160	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
FFA29_RS01190	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FFA29_RS01195	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
FFA29_RS01200	COG0601	transmembrane transport
FFA29_RS01205	COG0736	holo-[acyl-carrier-protein] synthase activity
FFA29_RS01210	COG0786	glutamate:sodium symporter activity
FFA29_RS01215	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
FFA29_RS01225	COG0560	Phosphoserine phosphatase
FFA29_RS01235	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
FFA29_RS01240	COG3248	Nucleoside-binding outer membrane protein
FFA29_RS01245	COG1393	Belongs to the ArsC family
FFA29_RS01250	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
FFA29_RS01255	COG0343	queuine tRNA-ribosyltransferase activity
FFA29_RS01265	COG0436	Aminotransferase
FFA29_RS01285	COG2861	carbohydrate metabolic process
FFA29_RS01290	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
FFA29_RS01295	COG0557	exoribonuclease II activity
FFA29_RS01300	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
FFA29_RS01310	COG0360	Binds together with S18 to 16S ribosomal RNA
FFA29_RS01315	COG0629	single-stranded DNA binding
FFA29_RS01320	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
FFA29_RS01330	COG0215	cysteine-tRNA ligase activity
FFA29_RS01335	COG0195	Participates in both transcription termination and antitermination
FFA29_RS01345	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FFA29_RS01350	COG2121	Domain of unknown function (DUF374)
FFA29_RS01360	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
FFA29_RS01370	COG0288	reversible hydration of carbon dioxide
FFA29_RS01375	COG0156	8-amino-7-oxononanoate synthase activity
FFA29_RS01380	COG0792	nuclease activity
FFA29_RS01400	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FFA29_RS01410	COG0540	Belongs to the ATCase OTCase family
FFA29_RS01415	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FFA29_RS01435	COG2824	Alkylphosphonate utilization operon protein PhnA
FFA29_RS01440	COG1451	nucleotide metabolic process
FFA29_RS01445	COG0730	response to heat
FFA29_RS01470	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FFA29_RS01480	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
FFA29_RS01485	COG0372	Belongs to the citrate synthase family
FFA29_RS01490	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FFA29_RS01495	COG2828	Protein conserved in bacteria
FFA29_RS01520	COG0181	hydroxymethylbilane synthase activity
FFA29_RS01530	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FFA29_RS01535	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
FFA29_RS01540	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FFA29_RS01545	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FFA29_RS01550	COG0450	alkyl hydroperoxide reductase
FFA29_RS01560	COG0105	UTP biosynthetic process
FFA29_RS01570	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FFA29_RS01575	COG0416	fatty acid biosynthetic process
FFA29_RS01580	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FFA29_RS01600	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FFA29_RS01605	COG1053	succinate dehydrogenase
FFA29_RS01615	COG1007	ATP synthesis coupled electron transport
FFA29_RS01625	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FFA29_RS01630	COG0713	ATP synthesis coupled electron transport
FFA29_RS01635	COG0839	Belongs to the complex I subunit 6 family
FFA29_RS01640	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FFA29_RS01645	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
FFA29_RS01650	COG1034	ATP synthesis coupled electron transport
FFA29_RS01655	COG0372	Belongs to the citrate synthase family
FFA29_RS01670	COG0649	NAD binding
FFA29_RS01670	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FFA29_RS01675	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FFA29_RS01680	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FFA29_RS01685	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
FFA29_RS01690	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
FFA29_RS01695	COG3610	response to peptide
FFA29_RS01700	COG2966	Psort location CytoplasmicMembrane, score
FFA29_RS01715	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
FFA29_RS01765	COG4771	TonB-dependent receptor
FFA29_RS01775	COG1971	Probably functions as a manganese efflux pump
FFA29_RS01790	COG1132	(ABC) transporter
FFA29_RS01795	COG1132	(ABC) transporter
FFA29_RS01795	COG2375	cellular response to nickel ion
FFA29_RS01800	COG4771	TonB-dependent receptor
FFA29_RS01820	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
FFA29_RS01825	COG1333	cytochrome c biogenesis protein
FFA29_RS01825	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FFA29_RS01830	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
FFA29_RS01835	COG3005	denitrification pathway
FFA29_RS01845	COG2199	diguanylate cyclase activity
FFA29_RS01845	COG2200	EAL domain
FFA29_RS01845	COG3287	FIST C domain
FFA29_RS01850	COG0840	transmembrane signaling receptor activity
FFA29_RS01870	COG3043	anaerobic respiration
FFA29_RS01875	COG0348	domain, Protein
FFA29_RS01880	COG0437	4 iron, 4 sulfur cluster binding
FFA29_RS01885	COG0243	molybdopterin cofactor binding
FFA29_RS01895	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FFA29_RS01900	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FFA29_RS01910	COG2204	response regulator
FFA29_RS01915	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FFA29_RS01920	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FFA29_RS01920	COG1648	precorrin-2 dehydrogenase activity
FFA29_RS01935	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FFA29_RS01940	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FFA29_RS01945	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
FFA29_RS01955	COG2404	hydrolase activity, acting on ester bonds
FFA29_RS01960	COG1832	CoA-binding protein
FFA29_RS01965	COG0642	Histidine kinase
FFA29_RS01970	COG0745	RESPONSE REGULATOR receiver
FFA29_RS01975	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FFA29_RS01980	COG0191	fructose-bisphosphate aldolase activity
FFA29_RS02000	COG0811	peptide transport
FFA29_RS02010	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
FFA29_RS02015	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FFA29_RS02025	COG0142	geranyltranstransferase activity
FFA29_RS02030	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
FFA29_RS02035	COG0442	prolyl-tRNA aminoacylation
FFA29_RS02040	COG0668	transmembrane transport
FFA29_RS02045	COG0617	tRNA 3'-terminal CCA addition
FFA29_RS02060	COG0815	Transfers the fatty acyl group on membrane lipoproteins
FFA29_RS02065	COG1862	Preprotein translocase
FFA29_RS02070	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FFA29_RS02075	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FFA29_RS02090	COG1360	Flagellar Motor Protein
FFA29_RS02095	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
FFA29_RS02105	COG0495	leucyl-tRNA aminoacylation
FFA29_RS02115	COG0285	dihydrofolate synthase activity
FFA29_RS02145	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FFA29_RS02170	COG0745	RESPONSE REGULATOR receiver
FFA29_RS02175	COG0642	Histidine kinase
FFA29_RS02180	COG2081	HI0933 family
FFA29_RS02185	COG0840	transmembrane signaling receptor activity
FFA29_RS02200	COG5002	protein histidine kinase activity
FFA29_RS02205	COG1692	metallophosphoesterase
FFA29_RS02220	COG2226	methyltransferase
FFA29_RS02225	COG1570	exodeoxyribonuclease VII activity
FFA29_RS02230	COG0835	chemotaxis
FFA29_RS02235	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
FFA29_RS02240	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
FFA29_RS02245	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
FFA29_RS02255	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
FFA29_RS02260	COG0459	protein refolding
FFA29_RS02270	COG0745	RESPONSE REGULATOR receiver
FFA29_RS02275	COG1408	metallophosphoesterase
FFA29_RS02300	COG1136	(ABC) transporter
FFA29_RS02320	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
FFA29_RS02325	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
FFA29_RS02330	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
FFA29_RS02335	COG0352	thiamine-phosphate diphosphorylase activity
FFA29_RS02340	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
FFA29_RS02350	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FFA29_RS02355	COG2264	protein methyltransferase activity
FFA29_RS02360	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FFA29_RS02370	COG0784	Response regulator, receiver
FFA29_RS02370	COG3437	response regulator, receiver
FFA29_RS02385	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FFA29_RS02400	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
FFA29_RS02410	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FFA29_RS02450	COG2274	protein secretion by the type I secretion system
FFA29_RS02470	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
FFA29_RS02475	COG1090	epimerase
FFA29_RS02480	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
FFA29_RS02495	COG0481	GTPase activity
FFA29_RS02500	COG1937	Protein conserved in bacteria
FFA29_RS02515	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
FFA29_RS02525	COG0482	sulfurtransferase activity
FFA29_RS02530	COG0482	sulfurtransferase activity
FFA29_RS02535	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
FFA29_RS02540	COG0006	proline dipeptidase activity
FFA29_RS02545	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
FFA29_RS02550	COG0402	S-adenosylhomocysteine deaminase activity
FFA29_RS02555	COG0616	signal peptide processing
FFA29_RS02565	COG0280	phosphate acetyltransferase
FFA29_RS02570	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FFA29_RS02580	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FFA29_RS02585	COG2176	DNA-directed DNA polymerase activity
FFA29_RS02615	COG2176	DNA-directed DNA polymerase activity
FFA29_RS02625	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FFA29_RS02640	COG5002	protein histidine kinase activity
FFA29_RS02685	COG1546	Belongs to the CinA family
FFA29_RS02685	COG1058	Belongs to the CinA family
FFA29_RS02690	COG0579	oxidoreductase
FFA29_RS02695	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
FFA29_RS02710	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FFA29_RS02725	COG0667	Aldo Keto reductase
FFA29_RS02730	COG0306	phosphate transporter
FFA29_RS02735	COG0840	transmembrane signaling receptor activity
FFA29_RS02745	COG0840	transmembrane signaling receptor activity
FFA29_RS02750	COG0824	Thioesterase
FFA29_RS02760	COG0501	Belongs to the peptidase M48B family
FFA29_RS02765	COG1322	Protein conserved in bacteria
FFA29_RS02785	COG0037	tRNA processing
FFA29_RS02805	COG0052	Belongs to the universal ribosomal protein uS2 family
FFA29_RS02810	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
FFA29_RS02815	COG1136	(ABC) transporter
FFA29_RS02825	COG0194	GDP metabolic process
FFA29_RS02830	COG5002	protein histidine kinase activity
FFA29_RS02830	COG5001	Diguanylate cyclase
FFA29_RS02835	COG2217	Heavy metal translocating P-type atpase
FFA29_RS02850	COG4608	Belongs to the ABC transporter superfamily
FFA29_RS02855	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
FFA29_RS02860	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
FFA29_RS02870	COG1434	Gram-negative-bacterium-type cell wall biogenesis
FFA29_RS02875	COG1121	(ABC) transporter
FFA29_RS02880	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FFA29_RS02885	COG2996	Protein conserved in bacteria
FFA29_RS02890	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
FFA29_RS02910	COG0210	DNA helicase
FFA29_RS02915	COG0569	domain protein
FFA29_RS02915	COG0475	glutathione-regulated potassium exporter activity
FFA29_RS02920	COG0525	valine-tRNA ligase activity
FFA29_RS02925	COG5290	Psort location Cytoplasmic, score
FFA29_RS02930	COG4895	conserved protein (DUF2196)
FFA29_RS02950	COG2814	Major facilitator Superfamily
FFA29_RS02955	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
FFA29_RS02975	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FFA29_RS02980	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FFA29_RS02985	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FFA29_RS02995	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FFA29_RS03030	COG0439	Biotin carboxylase
FFA29_RS03040	COG2151	metal-sulfur cluster biosynthetic enzyme
FFA29_RS03045	COG2166	iron-sulfur cluster assembly
FFA29_RS03050	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FFA29_RS03060	COG0396	ATPase activity
FFA29_RS03065	COG0719	Fe-S assembly protein
FFA29_RS03075	COG0822	iron-sulfur transferase activity
FFA29_RS03075	COG2906	2 iron, 2 sulfur cluster binding
FFA29_RS03075	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
FFA29_RS03080	COG2239	Acts as a magnesium transporter
FFA29_RS03085	COG3706	GGDEF domain
FFA29_RS03090	COG0165	Argininosuccinate lyase
FFA29_RS03095	COG0784	Response regulator, receiver
FFA29_RS03095	COG0835	chemotaxis
FFA29_RS03100	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FFA29_RS03105	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FFA29_RS03115	COG0556	nucleotide-excision repair
FFA29_RS03120	COG0840	transmembrane signaling receptor activity
FFA29_RS03125	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FFA29_RS03145	COG0840	transmembrane signaling receptor activity
FFA29_RS03165	COG4191	Histidine kinase
FFA29_RS03170	COG0840	transmembrane signaling receptor activity
FFA29_RS03175	COG0840	transmembrane signaling receptor activity
FFA29_RS03195	COG0698	ribose 5-phosphate isomerase
FFA29_RS03200	COG0681	Belongs to the peptidase S26 family
FFA29_RS03205	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
FFA29_RS03210	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
FFA29_RS03215	COG0193	aminoacyl-tRNA hydrolase activity
FFA29_RS03230	COG0860	N-Acetylmuramoyl-L-alanine amidase
FFA29_RS03240	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
FFA29_RS03245	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FFA29_RS03255	COG0528	UMP kinase activity
FFA29_RS03265	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FFA29_RS03270	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
FFA29_RS03275	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FFA29_RS03285	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
FFA29_RS03290	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
FFA29_RS03300	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
FFA29_RS03310	COG0305	Participates in initiation and elongation during chromosome replication
FFA29_RS03315	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
FFA29_RS03325	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FFA29_RS03345	COG0579	oxidoreductase
FFA29_RS03350	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FFA29_RS03355	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FFA29_RS03360	COG0367	asparagine synthase
FFA29_RS03365	COG1078	dGTPase activity
FFA29_RS03375	COG0588	phosphoglycerate mutase activity
FFA29_RS03380	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FFA29_RS03410	COG1696	Membrane protein involved in D-alanine export
FFA29_RS03420	COG1132	(ABC) transporter
FFA29_RS03425	COG2755	lipolytic protein G-D-S-L family
FFA29_RS03425	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
FFA29_RS03430	COG0438	transferase activity, transferring glycosyl groups
FFA29_RS03435	COG0367	asparagine synthase
FFA29_RS03465	COG0110	maltose O-acetyltransferase activity
FFA29_RS03480	COG0438	transferase activity, transferring glycosyl groups
FFA29_RS03485	COG0518	GMP synthase (glutamine-hydrolyzing) activity
FFA29_RS03485	COG0519	Catalyzes the synthesis of GMP from XMP
FFA29_RS03510	COG0463	Glycosyl transferase, family 2
FFA29_RS03515	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FFA29_RS03520	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
FFA29_RS03525	COG1086	Polysaccharide biosynthesis protein
FFA29_RS03535	COG1793	dna ligase
FFA29_RS03540	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
FFA29_RS03545	COG0133	tryptophan synthase activity
FFA29_RS03555	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
FFA29_RS03565	COG0848	biopolymer transport protein
FFA29_RS03585	COG0577	efflux transmembrane transporter activity
FFA29_RS03585	COG1136	(ABC) transporter
FFA29_RS03590	COG1136	(ABC) transporter
FFA29_RS03590	COG0577	efflux transmembrane transporter activity
FFA29_RS03635	COG0735	belongs to the Fur family
FFA29_RS03645	COG0114	fumarate hydratase activity
FFA29_RS03655	COG3920	Histidine kinase
FFA29_RS03660	COG0784	Response regulator, receiver
FFA29_RS03670	COG3128	pkhd-type hydroxylase
FFA29_RS03695	COG1966	Carbon starvation protein
FFA29_RS03700	COG0012	GTP binding
FFA29_RS03720	COG3123	guanosine phosphorylase activity
FFA29_RS03735	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
FFA29_RS03740	COG0585	pseudouridine synthase activity
FFA29_RS03750	COG0840	transmembrane signaling receptor activity
FFA29_RS03755	COG0632	four-way junction helicase activity
FFA29_RS03760	COG1181	Belongs to the D-alanine--D-alanine ligase family
FFA29_RS03785	COG0051	transcription antitermination factor activity, RNA binding
FFA29_RS03790	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
FFA29_RS03795	COG0088	Forms part of the polypeptide exit tunnel
FFA29_RS03800	COG0089	rRNA binding
FFA29_RS03805	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
FFA29_RS03810	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
FFA29_RS03815	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
FFA29_RS03820	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
FFA29_RS03825	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
FFA29_RS03830	COG0255	Belongs to the universal ribosomal protein uL29 family
FFA29_RS03835	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
FFA29_RS03840	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
FFA29_RS03845	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
FFA29_RS03850	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
FFA29_RS03855	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
FFA29_RS03860	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
FFA29_RS03865	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
FFA29_RS03870	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
FFA29_RS03875	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
FFA29_RS03880	COG0200	Binds to the 23S rRNA
FFA29_RS03885	COG0201	protein transport
FFA29_RS03890	COG0024	Methionine aminopeptidase
FFA29_RS03895	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FFA29_RS03900	COG1573	uracil-dna glycosylase
FFA29_RS03910	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
FFA29_RS03920	COG1032	radical SAM domain protein
FFA29_RS03930	COG0563	adenylate kinase activity
FFA29_RS03945	COG1064	alcohol dehydrogenase
FFA29_RS03950	COG1979	alcohol dehydrogenase
FFA29_RS03955	COG0840	transmembrane signaling receptor activity
FFA29_RS03960	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FFA29_RS03965	COG0322	excinuclease ABC activity
FFA29_RS03970	COG0840	transmembrane signaling receptor activity
FFA29_RS03980	COG0840	transmembrane signaling receptor activity
FFA29_RS03985	COG0840	transmembrane signaling receptor activity
FFA29_RS04030	COG0708	Exodeoxyribonuclease III
FFA29_RS04050	COG3040	lipid binding
FFA29_RS04065	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
FFA29_RS04075	COG3279	Response regulator of the LytR AlgR family
FFA29_RS04080	COG3275	phosphorelay sensor kinase activity
FFA29_RS04085	COG1233	COG1233 Phytoene dehydrogenase and related
FFA29_RS04090	COG0415	Belongs to the DNA photolyase family
FFA29_RS04110	COG0166	Belongs to the GPI family
FFA29_RS04155	COG0628	permease
FFA29_RS04160	COG2255	four-way junction helicase activity
FFA29_RS04165	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
FFA29_RS04170	COG0038	chloride channel
FFA29_RS04175	COG0159	tryptophan synthase activity
FFA29_RS04180	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
FFA29_RS04195	COG0716	FMN binding
FFA29_RS04215	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FFA29_RS04230	COG4753	response regulator
FFA29_RS04230	COG2207	Transcriptional regulator
FFA29_RS04240	COG0348	domain, Protein
FFA29_RS04255	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
FFA29_RS04260	COG0351	phosphomethylpyrimidine kinase
FFA29_RS04325	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FFA29_RS04355	COG1858	cytochrome C peroxidase
FFA29_RS04360	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
FFA29_RS04375	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
FFA29_RS04385	COG0745	RESPONSE REGULATOR receiver
FFA29_RS04420	COG0840	transmembrane signaling receptor activity
FFA29_RS04430	COG0840	transmembrane signaling receptor activity
FFA29_RS04445	COG0626	cystathionine gamma-synthase activity
FFA29_RS04470	COG0745	RESPONSE REGULATOR receiver
FFA29_RS04475	COG0784	Response regulator, receiver
FFA29_RS04475	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FFA29_RS04480	COG0582	viral genome integration into host DNA
FFA29_RS04510	COG0544	peptidyl-prolyl cis-trans isomerase activity
FFA29_RS04515	COG0740	serine-type endopeptidase activity
FFA29_RS04520	COG0242	peptide deformylase activity
FFA29_RS04535	COG0840	transmembrane signaling receptor activity
FFA29_RS04540	COG0606	chelatase, subunit chli
FFA29_RS04545	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FFA29_RS04570	COG0598	Magnesium transport protein CorA
FFA29_RS04575	COG0302	gtp cyclohydrolase
FFA29_RS04580	COG0739	heme binding
FFA29_RS04590	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FFA29_RS04595	COG0138	bifunctional purine biosynthesis protein purh
FFA29_RS04620	COG0179	Fumarylacetoacetate (FAA) hydrolase
FFA29_RS04625	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FFA29_RS04630	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FFA29_RS04640	COG2326	polyphosphate kinase activity
FFA29_RS04650	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FFA29_RS04655	COG0542	response to heat
FFA29_RS04660	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FFA29_RS04665	COG0594	ribonuclease P activity
FFA29_RS04670	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
FFA29_RS04675	COG0706	membrane insertase activity
FFA29_RS04685	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
FFA29_RS04705	COG0501	Belongs to the peptidase M48B family
FFA29_RS04715	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
FFA29_RS04720	COG0571	ribonuclease III activity
FFA29_RS04730	COG0358	DNA primase activity
FFA29_RS04735	COG0261	This protein binds to 23S rRNA in the presence of protein L20
FFA29_RS04740	COG0211	Belongs to the bacterial ribosomal protein bL27 family
FFA29_RS04745	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
FFA29_RS04750	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
FFA29_RS04755	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FFA29_RS04770	COG1192	Involved in chromosome partitioning
FFA29_RS04775	COG1475	DNA binding
FFA29_RS04785	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
FFA29_RS04790	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FFA29_RS04795	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
FFA29_RS04800	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
FFA29_RS04805	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
FFA29_RS04810	COG0355	proton-transporting ATP synthase activity, rotational mechanism
FFA29_RS04815	COG0811	peptide transport
FFA29_RS04820	COG0848	biopolymer transport protein
FFA29_RS04830	COG0823	Involved in the tonB-independent uptake of proteins
FFA29_RS04845	COG1047	Peptidyl-prolyl cis-trans
FFA29_RS04850	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FFA29_RS04855	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FFA29_RS04860	COG1115	amino acid carrier protein
FFA29_RS04870	COG0745	RESPONSE REGULATOR receiver
FFA29_RS04875	COG1027	Aspartate ammonia-lyase
FFA29_RS04890	COG1227	inorganic diphosphatase activity
FFA29_RS04895	COG0668	transmembrane transport
FFA29_RS04900	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FFA29_RS04915	COG0519	Catalyzes the synthesis of GMP from XMP
FFA29_RS04920	COG2207	Transcriptional regulator
FFA29_RS04925	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FFA29_RS04930	COG0010	Belongs to the arginase family
FFA29_RS04935	COG1595	DNA-templated transcription, initiation
FFA29_RS04970	COG4335	DNA alkylation repair
FFA29_RS05000	COG5001	Diguanylate cyclase
FFA29_RS05000	COG5002	protein histidine kinase activity
FFA29_RS05015	COG2995	paraquat-inducible protein a
FFA29_RS05055	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
FFA29_RS05060	COG0326	Molecular chaperone. Has ATPase activity
FFA29_RS05090	COG0513	Belongs to the DEAD box helicase family
FFA29_RS05100	COG0259	pyridoxamine-phosphate oxidase activity
FFA29_RS05105	COG5001	Diguanylate cyclase
FFA29_RS05105	COG5002	protein histidine kinase activity
FFA29_RS05110	COG1078	dGTPase activity
FFA29_RS05195	COG1921	L-seryl-tRNASec selenium transferase activity
FFA29_RS05215	COG0709	Synthesizes selenophosphate from selenide and ATP
FFA29_RS05225	COG3383	formate dehydrogenase (NAD+) activity
FFA29_RS05225	COG0243	molybdopterin cofactor binding
FFA29_RS05230	COG0437	4 iron, 4 sulfur cluster binding
FFA29_RS05240	COG1305	Transglutaminase-like
FFA29_RS05295	COG0437	4 iron, 4 sulfur cluster binding
FFA29_RS05305	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
FFA29_RS05310	COG1104	cysteine desulfurase activity
FFA29_RS05335	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FFA29_RS05340	COG0328	RNA-DNA hybrid ribonuclease activity
FFA29_RS05345	COG0840	transmembrane signaling receptor activity
FFA29_RS05360	COG1944	ATP diphosphatase activity
FFA29_RS05385	COG0513	Belongs to the DEAD box helicase family
FFA29_RS05405	COG1492	cobalamin metabolic process
FFA29_RS05410	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FFA29_RS05415	COG0508	dehydrogenase complex catalyzes the overall conversion of
FFA29_RS05420	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
FFA29_RS05425	COG0095	Lipoate-protein ligase
FFA29_RS05430	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
FFA29_RS05435	COG2258	MOSC domain
FFA29_RS05440	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FFA29_RS05465	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
FFA29_RS05480	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FFA29_RS05515	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FFA29_RS05530	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FFA29_RS05535	COG1611	Belongs to the LOG family
FFA29_RS05550	COG2853	Lipoprotein
FFA29_RS05555	COG0217	transcriptional regulatory protein
FFA29_RS05560	COG3706	GGDEF domain
FFA29_RS05560	COG4251	negative regulation of phosphorylation
FFA29_RS05560	COG5001	Diguanylate cyclase
FFA29_RS05560	COG2203	Gaf domain
FFA29_RS05570	COG1049	propionate catabolic process, 2-methylcitrate cycle
FFA29_RS05575	COG1309	transcriptional regulator
FFA29_RS05590	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
FFA29_RS05595	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
FFA29_RS05610	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
FFA29_RS05625	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
FFA29_RS05630	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
FFA29_RS05635	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
FFA29_RS05640	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
FFA29_RS05645	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
FFA29_RS05650	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
FFA29_RS05670	COG0301	tRNA thio-modification
FFA29_RS05670	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FFA29_RS05680	COG2814	Major facilitator Superfamily
FFA29_RS05695	COG2354	Protein conserved in bacteria
FFA29_RS05700	COG2081	HI0933 family
FFA29_RS05710	COG0840	transmembrane signaling receptor activity
FFA29_RS05725	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
FFA29_RS05730	COG0298	carbon dioxide binding
FFA29_RS05735	COG0409	Hydrogenase expression formation protein
FFA29_RS05745	COG2084	Dehydrogenase
FFA29_RS05755	COG0309	Hydrogenase expression formation protein (HypE)
FFA29_RS05785	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FFA29_RS05795	COG2171	N-acyltransferase activity
FFA29_RS05805	COG0488	(ABC) transporter
FFA29_RS05820	COG1393	Belongs to the ArsC family
FFA29_RS05845	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FFA29_RS05855	COG4773	Receptor
FFA29_RS05860	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FFA29_RS05870	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
FFA29_RS05880	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FFA29_RS05945	COG4974	Belongs to the 'phage' integrase family
FFA29_RS05955	COG1114	Component of the transport system for branched-chain amino acids
FFA29_RS05960	COG0861	Integral membrane protein TerC family
FFA29_RS05965	COG0842	Transport permease protein
FFA29_RS05970	COG0842	Transport permease protein
FFA29_RS05975	COG1131	(ABC) transporter
FFA29_RS05985	COG0789	Transcriptional regulator
FFA29_RS05990	COG0484	heat shock protein binding
FFA29_RS06005	COG2201	protein-glutamate methylesterase activity
FFA29_RS06015	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
FFA29_RS06015	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FFA29_RS06030	COG2207	Transcriptional regulator
FFA29_RS06030	COG4753	response regulator
FFA29_RS06035	COG3278	Belongs to the heme-copper respiratory oxidase family
FFA29_RS06065	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FFA29_RS06080	COG0776	regulation of translation
FFA29_RS06090	COG0275	rRNA processing
FFA29_RS06115	COG0039	L-malate dehydrogenase activity
FFA29_RS06125	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FFA29_RS06135	COG4591	ABC-type transport system involved in lipoprotein release permease component
FFA29_RS06140	COG0653	protein targeting
FFA29_RS06155	COG0840	transmembrane signaling receptor activity
FFA29_RS06165	COG2195	Cleaves the N-terminal amino acid of tripeptides
FFA29_RS06170	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FFA29_RS06170	COG1333	cytochrome c biogenesis protein
FFA29_RS06180	COG0500	methyltransferase
FFA29_RS06185	COG2199	diguanylate cyclase activity
FFA29_RS06195	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FFA29_RS06215	COG0133	tryptophan synthase activity
FFA29_RS06220	COG0484	heat shock protein binding
FFA29_RS06225	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
FFA29_RS06240	COG2205	protein histidine kinase activity
FFA29_RS06245	COG0745	RESPONSE REGULATOR receiver
FFA29_RS06250	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FFA29_RS06255	COG0569	domain protein
FFA29_RS06265	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FFA29_RS06275	COG1696	Membrane protein involved in D-alanine export
FFA29_RS06280	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FFA29_RS06285	COG0137	argininosuccinate synthase activity
FFA29_RS06300	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FFA29_RS06305	COG0802	atpase or kinase
FFA29_RS06310	COG1137	ATPase activity
FFA29_RS06315	COG2200	EAL domain
FFA29_RS06315	COG3287	FIST C domain
FFA29_RS06315	COG2199	diguanylate cyclase activity
FFA29_RS06320	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
FFA29_RS06345	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
FFA29_RS06350	COG0247	lactate metabolic process
FFA29_RS06350	COG2181	nitrate reductase activity
FFA29_RS06635	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FFA29_RS06640	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
FFA29_RS06645	COG0805	protein transport
FFA29_RS06650	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FFA29_RS06670	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
FFA29_RS06680	COG1663	tetraacyldisaccharide 4'-kinase activity
FFA29_RS06690	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FFA29_RS06695	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FFA29_RS06700	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FFA29_RS06700	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
FFA29_RS06715	COG0745	RESPONSE REGULATOR receiver
FFA29_RS06720	COG4191	Histidine kinase
FFA29_RS06720	COG0784	Response regulator, receiver
FFA29_RS06725	COG0113	porphobilinogen synthase activity
FFA29_RS06730	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
FFA29_RS06735	COG0357	Ribosomal RNA small subunit methyltransferase G
FFA29_RS06750	COG0751	glycine-tRNA ligase activity
FFA29_RS06775	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
FFA29_RS06800	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FFA29_RS06800	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FFA29_RS06810	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
FFA29_RS06835	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FFA29_RS06840	COG0612	Peptidase, M16
FFA29_RS06845	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
FFA29_RS06850	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FFA29_RS06855	COG0287	Prephenate dehydrogenase
FFA29_RS06860	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
FFA29_RS06875	COG0527	aspartate kinase activity
FFA29_RS06880	COG0494	nUDIX hydrolase
FFA29_RS06885	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FFA29_RS06890	COG2890	protein-(glutamine-N5) methyltransferase activity
FFA29_RS06895	COG0339	signal peptide processing
FFA29_RS06915	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FFA29_RS06920	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FFA29_RS06950	COG0582	viral genome integration into host DNA
FFA29_RS06955	COG2223	nitrite transmembrane transporter activity
FFA29_RS06965	COG2201	protein-glutamate methylesterase activity
FFA29_RS06970	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
FFA29_RS06975	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FFA29_RS06990	COG1185	polyribonucleotide nucleotidyltransferase activity
FFA29_RS07000	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
FFA29_RS07020	COG0659	secondary active sulfate transmembrane transporter activity
FFA29_RS07025	COG1160	GTP binding
FFA29_RS07035	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
FFA29_RS07050	COG0419	ATPase involved in DNA repair
FFA29_RS07055	COG0420	3'-5' exonuclease activity
FFA29_RS07060	COG3012	SEC-C Motif Domain Protein
FFA29_RS07110	COG0745	RESPONSE REGULATOR receiver
FFA29_RS07125	COG0642	Histidine kinase
FFA29_RS07130	COG0745	RESPONSE REGULATOR receiver
FFA29_RS07135	COG1196	nuclear chromosome segregation
FFA29_RS07135	COG1674	ftsk spoiiie
FFA29_RS07140	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FFA29_RS07145	COG0440	acetolactate synthase activity
FFA29_RS07150	COG0028	Belongs to the TPP enzyme family
FFA29_RS07160	COG0248	Ppx GppA phosphatase
FFA29_RS07175	COG0004	ammonium transporteR
FFA29_RS07180	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FFA29_RS07190	COG1253	flavin adenine dinucleotide binding
FFA29_RS07195	COG1193	negative regulation of DNA recombination
FFA29_RS07210	COG0243	molybdopterin cofactor binding
FFA29_RS07225	COG0488	(ABC) transporter
FFA29_RS07230	COG0488	(ABC) transporter
FFA29_RS07270	COG0521	Mo-molybdopterin cofactor biosynthetic process
FFA29_RS07280	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FFA29_RS07285	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FFA29_RS07295	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
FFA29_RS07330	COG0745	RESPONSE REGULATOR receiver
FFA29_RS07340	COG0513	Belongs to the DEAD box helicase family
FFA29_RS07365	COG0642	Histidine kinase
FFA29_RS07370	COG0745	RESPONSE REGULATOR receiver
FFA29_RS07380	COG1132	(ABC) transporter
FFA29_RS07400	COG1122	ATPase activity
FFA29_RS07410	COG4771	TonB-dependent receptor
FFA29_RS07430	COG0546	phosphoglycolate phosphatase activity
FFA29_RS07440	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
FFA29_RS07465	COG0330	HflC and HflK could
FFA29_RS07475	COG0745	RESPONSE REGULATOR receiver
FFA29_RS07500	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
FFA29_RS07505	COG0788	formyltetrahydrofolate deformylase activity
FFA29_RS07510	COG0280	phosphate acetyltransferase
FFA29_RS07510	COG0281	malic enzyme
FFA29_RS07525	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
FFA29_RS07540	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
FFA29_RS07545	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
FFA29_RS07565	COG0754	glutathionylspermidine amidase activity
FFA29_RS07570	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
FFA29_RS07580	COG1607	acyl-coa hydrolase
FFA29_RS07585	COG0488	(ABC) transporter
FFA29_RS07595	COG0778	Nitroreductase
FFA29_RS07615	COG2249	NAD(P)H dehydrogenase (quinone) activity
FFA29_RS07620	COG1733	regulation of RNA biosynthetic process
FFA29_RS07650	COG2855	membrane
FFA29_RS07655	COG0583	DNA-binding transcription factor activity
FFA29_RS07660	COG1881	PFAM PEBP family protein
FFA29_RS07680	COG2076	Multidrug Resistance protein
FFA29_RS07690	COG2249	NAD(P)H dehydrogenase (quinone) activity
FFA29_RS07695	COG1733	regulation of RNA biosynthetic process
FFA29_RS07730	COG1119	ATPase activity
FFA29_RS07745	COG0484	heat shock protein binding
FFA29_RS07760	COG0517	IMP dehydrogenase activity
FFA29_RS07760	COG0516	GMP reductase activity
FFA29_RS07765	COG0154	amidase activity
FFA29_RS07770	COG0203	ribosomal protein L17
FFA29_RS07775	COG0202	RNA polymerase activity
FFA29_RS07780	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
FFA29_RS07785	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
FFA29_RS07790	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
FFA29_RS07795	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FFA29_RS07810	COG0473	3-isopropylmalate dehydrogenase activity
FFA29_RS07815	COG0066	3-isopropylmalate dehydratase activity
FFA29_RS07820	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FFA29_RS07840	COG3123	guanosine phosphorylase activity
FFA29_RS07845	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
FFA29_RS07855	COG0772	Belongs to the SEDS family
FFA29_RS07860	COG0564	pseudouridine synthase activity
FFA29_RS07870	COG0220	tRNA (guanine-N7-)-methyltransferase activity
FFA29_RS07875	COG2884	Cell division ATP-binding protein ftsE
FFA29_RS07895	COG0768	penicillin binding
FFA29_RS07905	COG0784	Response regulator, receiver
FFA29_RS07905	COG3437	response regulator, receiver
FFA29_RS07915	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FFA29_RS07940	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FFA29_RS07945	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
FFA29_RS07960	COG1595	DNA-templated transcription, initiation
FFA29_RS07965	COG0456	acetyltransferase
FFA29_RS07970	COG0218	Necessary for normal cell division and for the maintenance of normal septation
FFA29_RS07985	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
FFA29_RS07990	COG0131	Imidazoleglycerol-phosphate dehydratase
FFA29_RS07995	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
FFA29_RS08005	COG0084	hydrolase, TatD family'
FFA29_RS08015	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
FFA29_RS08020	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
FFA29_RS08025	COG0359	binds to the 23S rRNA
FFA29_RS08035	COG0163	prenyltransferase activity
FFA29_RS08040	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
FFA29_RS08045	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FFA29_RS08050	COG0124	histidyl-tRNA synthetase
FFA29_RS08055	COG1166	arginine decarboxylase activity
FFA29_RS08060	COG1045	serine acetyltransferase
FFA29_RS08065	COG0730	response to heat
FFA29_RS08070	COG0840	transmembrane signaling receptor activity
FFA29_RS08080	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FFA29_RS08105	COG0628	permease
FFA29_RS08120	COG3077	Addiction module antitoxin, RelB DinJ family
FFA29_RS08185	COG0310	cobalt ion transport
FFA29_RS08195	COG2223	nitrite transmembrane transporter activity
FFA29_RS08205	COG1696	Membrane protein involved in D-alanine export
FFA29_RS08240	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FFA29_RS08245	COG0436	Aminotransferase
FFA29_RS08250	COG1451	nucleotide metabolic process
FFA29_RS08260	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
FFA29_RS08265	COG0519	Catalyzes the synthesis of GMP from XMP
FFA29_RS08265	COG0518	GMP synthase (glutamine-hydrolyzing) activity
FFA29_RS08310	COG0251	oxidation-reduction process
FFA29_RS08325	COG0596	Alpha beta hydrolase
FFA29_RS08330	COG0492	ferredoxin-NADP+ reductase activity
FFA29_RS08340	COG0488	(ABC) transporter
FFA29_RS08345	COG1610	YqeY-like protein
FFA29_RS08355	COG0157	Belongs to the NadC ModD family
FFA29_RS08360	COG0642	Histidine kinase
FFA29_RS08365	COG0745	RESPONSE REGULATOR receiver
FFA29_RS08375	COG3258	Cytochrome c
FFA29_RS08390	COG0300	oxidoreductase activity
FFA29_RS08395	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FFA29_RS08400	COG0742	ribosomal rna small subunit methyltransferase
FFA29_RS08405	COG1418	mRNA catabolic process
FFA29_RS08410	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
FFA29_RS08415	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FFA29_RS08420	COG0552	protein localization to endoplasmic reticulum
FFA29_RS08430	COG3150	esterase
FFA29_RS08435	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
FFA29_RS08440	COG3340	Belongs to the peptidase S51 family
FFA29_RS08450	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
FFA29_RS08465	COG0728	peptidoglycan biosynthetic process
FFA29_RS08470	COG1132	(ABC) transporter
FFA29_RS08475	COG0167	dihydroorotate dehydrogenase activity
FFA29_RS08485	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FFA29_RS08490	COG1028	Short-chain dehydrogenase reductase Sdr
FFA29_RS08495	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FFA29_RS08500	COG0750	zinc metalloprotease
FFA29_RS08515	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
FFA29_RS08630	COG2337	Toxic component of a toxin-antitoxin (TA) module
FFA29_RS08640	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FFA29_RS08655	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
FFA29_RS08660	COG2363	Small membrane protein
FFA29_RS08670	COG1666	GTP binding
FFA29_RS08690	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FFA29_RS08695	COG0135	phosphoribosylanthranilate isomerase activity
FFA29_RS08700	COG2176	DNA-directed DNA polymerase activity
FFA29_RS08710	COG1013	pyruvate-flavodoxin oxidoreductase activity
FFA29_RS08715	COG0674	pyruvate-flavodoxin oxidoreductase activity
FFA29_RS08715	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
FFA29_RS08725	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FFA29_RS08730	COG0727	PFAM Uncharacterised protein family (UPF0153)
FFA29_RS08740	COG0134	indole-3-glycerol-phosphate synthase activity
FFA29_RS08745	COG0583	DNA-binding transcription factor activity
FFA29_RS08750	COG1942	4-Oxalocrotonate Tautomerase
FFA29_RS08755	COG0840	transmembrane signaling receptor activity
FFA29_RS08795	COG0731	radical SAM domain protein
FFA29_RS08800	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
FFA29_RS08810	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FFA29_RS08825	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
FFA29_RS08835	COG0227	Belongs to the bacterial ribosomal protein bL28 family
FFA29_RS08845	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FFA29_RS08855	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
FFA29_RS08855	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
FFA29_RS08860	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
FFA29_RS08865	COG1368	sulfuric ester hydrolase activity
FFA29_RS08870	COG0859	PFAM glycosyl transferase family 9
FFA29_RS08880	COG0859	PFAM glycosyl transferase family 9
FFA29_RS08890	COG2194	sulfuric ester hydrolase activity
FFA29_RS08905	COG1696	Membrane protein involved in D-alanine export
FFA29_RS08910	COG0297	glycogen (starch) synthase activity
FFA29_RS08915	COG0463	Glycosyl transferase, family 2
FFA29_RS08920	COG0438	transferase activity, transferring glycosyl groups
FFA29_RS08965	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
FFA29_RS08980	COG0859	PFAM glycosyl transferase family 9
FFA29_RS08990	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FFA29_RS09000	COG0493	'glutamate synthase
FFA29_RS09005	COG0067	glutamate synthase
FFA29_RS09005	COG0070	glutamate synthase
FFA29_RS09005	COG0069	glutamate synthase activity
FFA29_RS09020	COG0840	transmembrane signaling receptor activity
FFA29_RS09025	COG0840	transmembrane signaling receptor activity
FFA29_RS09035	COG1739	Uncharacterized protein family UPF0029
FFA29_RS09045	COG0196	riboflavin kinase activity
FFA29_RS09050	COG2226	methyltransferase
FFA29_RS09055	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FFA29_RS09065	COG0277	FAD linked oxidase domain protein
FFA29_RS09070	COG1295	ribonuclease BN
FFA29_RS09080	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FFA29_RS09090	COG2877	3-deoxy-8-phosphooctulonate synthase activity
FFA29_RS09095	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
FFA29_RS09100	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FFA29_RS09105	COG0284	orotidine-5'-phosphate decarboxylase activity
FFA29_RS09135	COG1918	ferrous iron import across plasma membrane
FFA29_RS09140	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
FFA29_RS09140	COG1918	ferrous iron import across plasma membrane
FFA29_RS09165	COG2217	Heavy metal translocating P-type atpase
FFA29_RS09175	COG4773	Receptor
FFA29_RS09185	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FFA29_RS09200	COG1278	Cold shock
FFA29_RS09205	COG2207	Transcriptional regulator
FFA29_RS09205	COG4753	response regulator
FFA29_RS09210	COG3852	Histidine kinase
FFA29_RS09240	COG3135	benzoate transporter
FFA29_RS09255	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
FFA29_RS09260	COG0085	RNA polymerase activity
FFA29_RS09265	COG0222	ribosome binding
FFA29_RS09270	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
FFA29_RS09275	COG0081	regulation of translation
FFA29_RS09280	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
FFA29_RS09285	COG0250	Participates in transcription elongation, termination and antitermination
FFA29_RS09300	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FFA29_RS09305	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FFA29_RS09335	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FFA29_RS09340	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
FFA29_RS09345	COG0444	Belongs to the ABC transporter superfamily
FFA29_RS09350	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
FFA29_RS09355	COG0174	glutamine synthetase
FFA29_RS09365	COG0314	molybdopterin synthase activity
FFA29_RS09375	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
FFA29_RS09380	COG1968	undecaprenyl-diphosphatase activity
FFA29_RS09385	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
FFA29_RS09390	COG0772	Belongs to the SEDS family
FFA29_RS09400	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
FFA29_RS09440	COG0542	response to heat
FFA29_RS09445	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
FFA29_RS09450	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FFA29_RS09465	COG2030	dehydratase
FFA29_RS09485	COG0840	transmembrane signaling receptor activity
FFA29_RS09490	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FFA29_RS09510	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FFA29_RS09515	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FFA29_RS09525	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FFA29_RS09530	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FFA29_RS09535	COG1157	protein secretion by the type III secretion system
FFA29_RS09545	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FFA29_RS09565	COG1677	Flagellar hook-basal body complex protein FliE
FFA29_RS09575	COG0455	bacterial-type flagellum organization
FFA29_RS09580	COG1419	protein localization to endoplasmic reticulum
FFA29_RS09595	COG3951	Flagellar rod assembly protein muramidase FlgJ
FFA29_RS09600	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FFA29_RS09620	COG1749	Flagellar hook protein flgE
FFA29_RS09625	COG4786	Flagellar basal body rod
FFA29_RS09635	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FFA29_RS09645	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FFA29_RS09650	COG1766	The M ring may be actively involved in energy transduction
FFA29_RS09655	COG1815	bacterial-type flagellum-dependent cell motility
FFA29_RS09660	COG4786	Flagellar basal body rod
FFA29_RS09670	COG0745	RESPONSE REGULATOR receiver
FFA29_RS09690	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
FFA29_RS09700	COG0228	four-way junction DNA binding
FFA29_RS09705	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FFA29_RS09710	COG0564	pseudouridine synthase activity
FFA29_RS09715	COG1519	Transferase
FFA29_RS09725	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FFA29_RS09730	COG0752	glycyl-tRNA synthetase alpha subunit
FFA29_RS09740	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FFA29_RS09750	COG0826	peptidase U32
FFA29_RS09755	COG0840	transmembrane signaling receptor activity
FFA29_RS09760	COG0497	DNA recombination
FFA29_RS09765	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
FFA29_RS09770	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
FFA29_RS09775	COG0049	tRNA binding
FFA29_RS09780	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
FFA29_RS09790	COG2814	Major facilitator Superfamily
FFA29_RS09795	COG4771	TonB-dependent receptor
FFA29_RS09810	COG1116	anion transmembrane transporter activity
FFA29_RS09815	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FFA29_RS09855	COG0512	Glutamine amidotransferase of anthranilate synthase
FFA29_RS09860	COG1840	ABC-type Fe3 transport system, periplasmic component
FFA29_RS09865	COG1178	ABC-type Fe3 transport system permease component
FFA29_RS09880	COG4774	siderophore transport
FFA29_RS09920	COG2183	response to ionizing radiation
FFA29_RS09935	COG0251	oxidation-reduction process
FFA29_RS09950	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FFA29_RS09960	COG0586	Pfam SNARE associated Golgi protein
FFA29_RS09965	COG0335	large ribosomal subunit rRNA binding
FFA29_RS09970	COG0336	Belongs to the RNA methyltransferase TrmD family
FFA29_RS09980	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
FFA29_RS09985	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FFA29_RS09990	COG0356	it plays a direct role in the translocation of protons across the membrane
FFA29_RS10000	COG4773	Receptor
FFA29_RS10010	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
FFA29_RS10020	COG0157	Belongs to the NadC ModD family
FFA29_RS10035	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
FFA29_RS10045	COG0083	homoserine kinase activity
FFA29_RS10055	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
FFA29_RS10060	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
FFA29_RS10065	COG0779	Required for maturation of 30S ribosomal subunits
FFA29_RS10070	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FFA29_RS10070	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FFA29_RS10075	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
FFA29_RS10080	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FFA29_RS10085	COG1185	polyribonucleotide nucleotidyltransferase activity
FFA29_RS10085	COG0539	negative regulation of cytoplasmic translation
FFA29_RS10090	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
FFA29_RS10095	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
FFA29_RS10100	COG0072	phenylalanine-tRNA ligase activity
FFA29_RS10100	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FFA29_RS10105	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
FFA29_RS10110	COG0537	adenosine 5'-monophosphoramidase activity
FFA29_RS10115	COG0825	malonyl-CoA metabolic process
FFA29_RS10120	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FFA29_RS10125	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FFA29_RS10135	COG0602	queuosine metabolic process
FFA29_RS10145	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
FFA29_RS10155	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FFA29_RS10165	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FFA29_RS10175	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FFA29_RS10180	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FFA29_RS10185	COG1074	ATP-dependent DNA helicase activity
FFA29_RS10195	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
FFA29_RS10240	COG3278	Belongs to the heme-copper respiratory oxidase family
FFA29_RS10245	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
FFA29_RS10250	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
FFA29_RS10255	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
FFA29_RS10270	COG1242	4 iron, 4 sulfur cluster binding
FFA29_RS10275	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
FFA29_RS10280	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
FFA29_RS10285	COG0492	ferredoxin-NADP+ reductase activity
FFA29_RS10290	COG3118	belongs to the thioredoxin family
FFA29_RS10295	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
FFA29_RS10320	COG0642	Histidine kinase
FFA29_RS10325	COG0745	RESPONSE REGULATOR receiver
FFA29_RS10335	COG0129	dihydroxy-acid dehydratase activity
FFA29_RS10370	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FFA29_RS10385	COG0585	pseudouridine synthase activity
FFA29_RS10400	COG0793	Belongs to the peptidase S41A family
FFA29_RS10405	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
FFA29_RS10410	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FFA29_RS10415	COG0047	phosphoribosylformylglycinamidine synthase activity
FFA29_RS10425	COG0204	Acyl-transferase
FFA29_RS10430	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
FFA29_RS10435	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FFA29_RS10440	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FFA29_RS10445	COG0018	arginyl-trna synthetase
FFA29_RS10455	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
FFA29_RS10465	COG0126	phosphoglycerate kinase activity
FFA29_RS10470	COG0149	triose-phosphate isomerase activity
FFA29_RS10475	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FFA29_RS10480	COG0019	diaminopimelate decarboxylase activity
FFA29_RS10485	COG1605	Chorismate mutase
FFA29_RS10485	COG0077	Prephenate dehydratase
FFA29_RS10490	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FFA29_RS10495	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
FFA29_RS10505	COG0424	maF-like protein
FFA29_RS10520	COG0791	NLP P60 protein
FFA29_RS10535	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
FFA29_RS10540	COG1012	belongs to the aldehyde dehydrogenase family
FFA29_RS10550	COG1704	LemA family
FFA29_RS10565	COG0546	phosphoglycolate phosphatase activity
FFA29_RS10570	COG0783	Belongs to the Dps family
FFA29_RS10575	COG2814	Major facilitator Superfamily
FFA29_RS10590	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FFA29_RS10595	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FFA29_RS10615	COG1595	DNA-templated transcription, initiation
FFA29_RS10630	COG2081	HI0933 family
FFA29_RS10645	COG1959	2 iron, 2 sulfur cluster binding
FFA29_RS10660	COG0175	sulfate reduction
FFA29_RS10665	COG0175	sulfate reduction
FFA29_RS10670	COG2895	sulfate adenylyltransferase (ATP) activity
FFA29_RS10685	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
FFA29_RS10715	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
FFA29_RS10730	COG4232	protein-disulfide reductase activity
FFA29_RS10735	COG0189	ligase activity
FFA29_RS10750	COG3287	FIST C domain
FFA29_RS10750	COG2200	EAL domain
FFA29_RS10750	COG2199	diguanylate cyclase activity
FFA29_RS10755	COG0688	phosphatidylethanolamine metabolic process
FFA29_RS10765	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
FFA29_RS10770	COG0443	Heat shock 70 kDa protein
FFA29_RS10775	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
FFA29_RS10790	COG0101	tRNA pseudouridine synthase activity
FFA29_RS10805	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FFA29_RS10815	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
FFA29_RS10830	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FFA29_RS10845	COG0445	tRNA wobble uridine modification
FFA29_RS10865	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
FFA29_RS10870	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FFA29_RS10875	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FFA29_RS10885	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FFA29_RS10895	COG1252	NADH dehydrogenase
FFA29_RS10900	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
FFA29_RS10910	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FFA29_RS10925	COG2814	Major facilitator Superfamily
FFA29_RS10930	COG0659	secondary active sulfate transmembrane transporter activity
FFA29_RS10950	COG1222	aaa ATPase
FFA29_RS10960	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
FFA29_RS10965	COG0812	UDP-N-acetylmuramate dehydrogenase activity
FFA29_RS10980	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
FFA29_RS10995	COG0148	phosphopyruvate hydratase activity
FFA29_RS11000	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
FFA29_RS11010	COG1086	Polysaccharide biosynthesis protein
FFA29_RS11015	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FFA29_RS11020	COG1083	cytidylyl-transferase
FFA29_RS11025	COG2089	acid synthase
FFA29_RS11045	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
FFA29_RS11065	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FFA29_RS11075	COG0348	domain, Protein
FFA29_RS11080	COG0504	CTP synthase activity
FFA29_RS11085	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FFA29_RS11105	COG0587	DNA-directed DNA polymerase activity
FFA29_RS11110	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
FFA29_RS11125	COG0315	cyclic pyranopterin monophosphate synthase activity
FFA29_RS11130	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FFA29_RS11170	COG0670	Belongs to the BI1 family
FFA29_RS11175	COG0352	thiamine-phosphate diphosphorylase activity
FFA29_RS11185	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FFA29_RS11190	COG0233	cytoplasmic translational termination
FFA29_RS11195	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
FFA29_RS11220	COG3022	response to hydroperoxide
FFA29_RS11235	COG1408	metallophosphoesterase
FFA29_RS11240	COG0071	Belongs to the small heat shock protein (HSP20) family
FFA29_RS11245	COG2703	oxygen carrier activity
FFA29_RS11250	COG0840	transmembrane signaling receptor activity
FFA29_RS11265	COG2308	Evidence 4 Homologs of previously reported genes of
FFA29_RS11270	COG1305	Transglutaminase-like
FFA29_RS11280	COG4208	sulfate ABC transporter
FFA29_RS11285	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
FFA29_RS11295	COG3287	FIST C domain
FFA29_RS11295	COG2199	diguanylate cyclase activity
FFA29_RS11295	COG2200	EAL domain
FFA29_RS11320	COG1116	anion transmembrane transporter activity
FFA29_RS11325	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FFA29_RS11340	COG1116	anion transmembrane transporter activity
FFA29_RS11345	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FFA29_RS11350	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FFA29_RS11355	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FFA29_RS11380	COG2308	Evidence 4 Homologs of previously reported genes of
FFA29_RS11385	COG1217	gtp-binding protein TYPA
FFA29_RS11390	COG2391	methyltransferase activity
FFA29_RS11395	COG0425	Belongs to the sulfur carrier protein TusA family
FFA29_RS11430	COG3706	GGDEF domain
FFA29_RS11470	COG0745	RESPONSE REGULATOR receiver
FFA29_RS11475	COG2205	protein histidine kinase activity
FFA29_RS11475	COG2770	Histidine kinase
FFA29_RS11480	COG2226	methyltransferase
FFA29_RS11485	COG2207	Transcriptional regulator
FFA29_RS11490	COG3437	response regulator, receiver
FFA29_RS11490	COG0784	Response regulator, receiver
FFA29_RS11495	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
FFA29_RS11500	COG2066	Belongs to the glutaminase family
FFA29_RS11520	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group