locus-tag	class	description
ABU_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
ABU_RS00010	COG0592	DNA-directed DNA polymerase activity
ABU_RS00015	COG0187	DNA topoisomerase II activity
ABU_RS00020	COG0492	ferredoxin-NADP+ reductase activity
ABU_RS00025	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
ABU_RS00035	COG1238	metal cluster binding
ABU_RS00040	COG0500	methyltransferase
ABU_RS00045	COG3842	ATPase activity
ABU_RS00090	COG0564	pseudouridine synthase activity
ABU_RS00095	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ABU_RS00100	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABU_RS00105	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABU_RS00135	COG0604	alcohol dehydrogenase
ABU_RS00140	COG1733	regulation of RNA biosynthetic process
ABU_RS00145	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
ABU_RS00150	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABU_RS00165	COG1620	l-lactate permease
ABU_RS00170	COG0745	RESPONSE REGULATOR receiver
ABU_RS00175	COG3852	Histidine kinase
ABU_RS00180	COG1556	Lactate utilization protein
ABU_RS00185	COG1139	Iron-sulfur cluster binding protein
ABU_RS00190	COG0247	lactate metabolic process
ABU_RS00195	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABU_RS00200	COG0511	ligase activity, forming carbon-carbon bonds
ABU_RS00205	COG0439	Biotin carboxylase
ABU_RS00210	COG0513	Belongs to the DEAD box helicase family
ABU_RS00215	COG0306	phosphate transporter
ABU_RS00225	COG0367	asparagine synthase
ABU_RS00235	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ABU_RS00240	COG1981	membrane
ABU_RS00245	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ABU_RS00245	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
ABU_RS00250	COG1187	pseudouridine synthase activity
ABU_RS00255	COG0517	IMP dehydrogenase activity
ABU_RS00255	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
ABU_RS00260	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
ABU_RS00265	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
ABU_RS00270	COG0107	imidazoleglycerol-phosphate synthase activity
ABU_RS00285	COG0820	rRNA (adenine-C2-)-methyltransferase activity
ABU_RS00290	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ABU_RS00295	COG0724	RNA recognition motif
ABU_RS00300	COG0745	RESPONSE REGULATOR receiver
ABU_RS00305	COG0642	Histidine kinase
ABU_RS00360	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ABU_RS00365	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ABU_RS00370	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ABU_RS00385	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABU_RS00390	COG0746	molybdenum cofactor guanylyltransferase activity
ABU_RS00395	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
ABU_RS00400	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
ABU_RS00405	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABU_RS00410	COG0268	Binds directly to 16S ribosomal RNA
ABU_RS00415	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
ABU_RS00425	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ABU_RS00430	COG4943	cyclic-guanylate-specific phosphodiesterase activity
ABU_RS00435	COG0573	inorganic phosphate transmembrane transporter activity
ABU_RS00440	COG0581	inorganic phosphate transmembrane transporter activity
ABU_RS00445	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
ABU_RS00450	COG0704	Plays a role in the regulation of phosphate uptake
ABU_RS00460	COG0745	RESPONSE REGULATOR receiver
ABU_RS00465	COG5002	protein histidine kinase activity
ABU_RS00470	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
ABU_RS00475	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ABU_RS00485	COG0546	phosphoglycolate phosphatase activity
ABU_RS00520	COG0288	reversible hydration of carbon dioxide
ABU_RS00540	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABU_RS00545	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ABU_RS00560	COG1854	S-ribosylhomocysteine lyase activity
ABU_RS00575	COG1686	Belongs to the peptidase S11 family
ABU_RS00590	COG0646	methionine synthase
ABU_RS00590	COG1410	methionine synthase
ABU_RS00610	COG0140	phosphoribosyl-ATP diphosphatase activity
ABU_RS00610	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ABU_RS00620	COG0489	protein tyrosine kinase activity
ABU_RS00625	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
ABU_RS00635	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
ABU_RS00635	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
ABU_RS00645	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ABU_RS00655	COG0505	Belongs to the CarA family
ABU_RS00665	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ABU_RS00670	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
ABU_RS00675	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ABU_RS00680	COG2353	YceI-like domain
ABU_RS00685	COG1846	Transcriptional regulator
ABU_RS00690	COG2353	YceI-like domain
ABU_RS00705	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ABU_RS00710	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
ABU_RS00715	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
ABU_RS00720	COG0237	dephospho-CoA kinase activity
ABU_RS00725	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
ABU_RS00730	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
ABU_RS00735	COG0456	acetyltransferase
ABU_RS00765	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ABU_RS00770	COG0254	rRNA binding
ABU_RS00775	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
ABU_RS00790	COG0436	Aminotransferase
ABU_RS00795	COG0460	homoserine dehydrogenase
ABU_RS00805	COG0575	Belongs to the CDS family
ABU_RS00810	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
ABU_RS00825	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
ABU_RS00830	COG0023	Translation Initiation Factor
ABU_RS00835	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ABU_RS00835	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ABU_RS00840	COG1324	tolerance protein
ABU_RS00845	COG2022	thiamine diphosphate biosynthetic process
ABU_RS00915	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ABU_RS00925	COG1346	cytolysis
ABU_RS00935	COG3766	membrane
ABU_RS00940	COG1301	dicarboxylic acid transport
ABU_RS00960	COG4589	Belongs to the CDS family
ABU_RS00970	COG0204	Acyl-transferase
ABU_RS00970	COG0318	PFAM AMP-dependent synthetase and ligase
ABU_RS00975	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
ABU_RS00990	COG0666	response to abiotic stimulus
ABU_RS01000	COG0418	dihydroorotase activity
ABU_RS01010	COG1706	bacterial-type flagellum-dependent cell motility
ABU_RS01045	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
ABU_RS01075	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ABU_RS01080	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
ABU_RS01085	COG0601	transmembrane transport
ABU_RS01090	COG0736	holo-[acyl-carrier-protein] synthase activity
ABU_RS01095	COG0786	glutamate:sodium symporter activity
ABU_RS01100	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ABU_RS01110	COG0560	Phosphoserine phosphatase
ABU_RS01120	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
ABU_RS01125	COG3248	Nucleoside-binding outer membrane protein
ABU_RS01145	COG1393	Belongs to the ArsC family
ABU_RS01150	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABU_RS01155	COG0343	queuine tRNA-ribosyltransferase activity
ABU_RS01165	COG0436	Aminotransferase
ABU_RS01185	COG2861	carbohydrate metabolic process
ABU_RS01190	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
ABU_RS01195	COG0557	exoribonuclease II activity
ABU_RS01200	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
ABU_RS01210	COG0360	Binds together with S18 to 16S ribosomal RNA
ABU_RS01215	COG0629	single-stranded DNA binding
ABU_RS01220	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
ABU_RS01230	COG0215	cysteine-tRNA ligase activity
ABU_RS01235	COG0195	Participates in both transcription termination and antitermination
ABU_RS01245	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ABU_RS01250	COG2121	Domain of unknown function (DUF374)
ABU_RS01260	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
ABU_RS01270	COG0288	reversible hydration of carbon dioxide
ABU_RS01275	COG0156	8-amino-7-oxononanoate synthase activity
ABU_RS01280	COG0792	nuclease activity
ABU_RS01300	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ABU_RS01310	COG0540	Belongs to the ATCase OTCase family
ABU_RS01315	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ABU_RS01330	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ABU_RS01335	COG2824	Alkylphosphonate utilization operon protein PhnA
ABU_RS01340	COG1451	nucleotide metabolic process
ABU_RS01345	COG0730	response to heat
ABU_RS01370	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ABU_RS01380	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
ABU_RS01385	COG0372	Belongs to the citrate synthase family
ABU_RS01390	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
ABU_RS01395	COG2828	Protein conserved in bacteria
ABU_RS01415	COG0181	hydroxymethylbilane synthase activity
ABU_RS01425	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ABU_RS01430	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
ABU_RS01435	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABU_RS01440	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ABU_RS01445	COG0450	alkyl hydroperoxide reductase
ABU_RS01455	COG0105	UTP biosynthetic process
ABU_RS01465	COG0333	Belongs to the bacterial ribosomal protein bL32 family
ABU_RS01470	COG0416	fatty acid biosynthetic process
ABU_RS01475	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ABU_RS01495	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ABU_RS01500	COG1053	succinate dehydrogenase
ABU_RS01510	COG1007	ATP synthesis coupled electron transport
ABU_RS01520	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ABU_RS01525	COG0713	ATP synthesis coupled electron transport
ABU_RS01530	COG0839	Belongs to the complex I subunit 6 family
ABU_RS01535	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABU_RS01540	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
ABU_RS01545	COG1034	ATP synthesis coupled electron transport
ABU_RS01550	COG0372	Belongs to the citrate synthase family
ABU_RS01565	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABU_RS01565	COG0649	NAD binding
ABU_RS01570	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABU_RS01575	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABU_RS01580	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
ABU_RS01585	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
ABU_RS01590	COG3610	response to peptide
ABU_RS01595	COG2966	Psort location CytoplasmicMembrane, score
ABU_RS01610	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
ABU_RS01640	COG4774	siderophore transport
ABU_RS01665	COG4771	TonB-dependent receptor
ABU_RS01675	COG1971	Probably functions as a manganese efflux pump
ABU_RS01690	COG1132	(ABC) transporter
ABU_RS01695	COG2375	cellular response to nickel ion
ABU_RS01695	COG1132	(ABC) transporter
ABU_RS01700	COG4771	TonB-dependent receptor
ABU_RS01725	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
ABU_RS01730	COG1333	cytochrome c biogenesis protein
ABU_RS01730	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ABU_RS01735	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
ABU_RS01740	COG3005	denitrification pathway
ABU_RS01750	COG3287	FIST C domain
ABU_RS01750	COG2200	EAL domain
ABU_RS01750	COG2199	diguanylate cyclase activity
ABU_RS01755	COG0840	transmembrane signaling receptor activity
ABU_RS01775	COG3043	anaerobic respiration
ABU_RS01780	COG0348	domain, Protein
ABU_RS01785	COG0437	4 iron, 4 sulfur cluster binding
ABU_RS01790	COG0243	molybdopterin cofactor binding
ABU_RS01800	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
ABU_RS01805	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
ABU_RS01815	COG2204	response regulator
ABU_RS01820	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ABU_RS01825	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ABU_RS01825	COG1648	precorrin-2 dehydrogenase activity
ABU_RS01840	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ABU_RS01845	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ABU_RS01850	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ABU_RS01860	COG2404	hydrolase activity, acting on ester bonds
ABU_RS01865	COG1832	CoA-binding protein
ABU_RS01870	COG0642	Histidine kinase
ABU_RS01875	COG0745	RESPONSE REGULATOR receiver
ABU_RS01880	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABU_RS01885	COG0191	fructose-bisphosphate aldolase activity
ABU_RS01905	COG0811	peptide transport
ABU_RS01915	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
ABU_RS01920	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
ABU_RS01930	COG0142	geranyltranstransferase activity
ABU_RS01935	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
ABU_RS01940	COG0442	prolyl-tRNA aminoacylation
ABU_RS01945	COG0668	transmembrane transport
ABU_RS01950	COG0617	tRNA 3'-terminal CCA addition
ABU_RS01965	COG0815	Transfers the fatty acyl group on membrane lipoproteins
ABU_RS01970	COG1862	Preprotein translocase
ABU_RS01975	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ABU_RS01980	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ABU_RS01995	COG1360	Flagellar Motor Protein
ABU_RS02000	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ABU_RS02010	COG0495	leucyl-tRNA aminoacylation
ABU_RS02020	COG0285	dihydrofolate synthase activity
ABU_RS02050	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ABU_RS02070	COG0745	RESPONSE REGULATOR receiver
ABU_RS02075	COG0642	Histidine kinase
ABU_RS02080	COG2081	HI0933 family
ABU_RS02085	COG0840	transmembrane signaling receptor activity
ABU_RS02100	COG5002	protein histidine kinase activity
ABU_RS02105	COG1692	metallophosphoesterase
ABU_RS02120	COG2226	methyltransferase
ABU_RS02125	COG1570	exodeoxyribonuclease VII activity
ABU_RS02130	COG0835	chemotaxis
ABU_RS02135	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ABU_RS02140	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
ABU_RS02145	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
ABU_RS02155	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
ABU_RS02160	COG0459	protein refolding
ABU_RS02165	COG5002	protein histidine kinase activity
ABU_RS02170	COG0745	RESPONSE REGULATOR receiver
ABU_RS02175	COG1408	metallophosphoesterase
ABU_RS02200	COG1136	(ABC) transporter
ABU_RS02220	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ABU_RS02225	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ABU_RS02230	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
ABU_RS02235	COG0352	thiamine-phosphate diphosphorylase activity
ABU_RS02240	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
ABU_RS02250	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ABU_RS02255	COG2264	protein methyltransferase activity
ABU_RS02260	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ABU_RS02265	COG3437	response regulator, receiver
ABU_RS02265	COG0784	Response regulator, receiver
ABU_RS02280	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ABU_RS02295	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
ABU_RS02305	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABU_RS02345	COG2274	protein secretion by the type I secretion system
ABU_RS02365	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
ABU_RS02370	COG1090	epimerase
ABU_RS02375	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
ABU_RS02390	COG0481	GTPase activity
ABU_RS02395	COG1937	Protein conserved in bacteria
ABU_RS02410	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ABU_RS02420	COG0482	sulfurtransferase activity
ABU_RS02425	COG0482	sulfurtransferase activity
ABU_RS02430	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ABU_RS02435	COG0006	proline dipeptidase activity
ABU_RS02440	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
ABU_RS02445	COG0402	S-adenosylhomocysteine deaminase activity
ABU_RS02450	COG0616	signal peptide processing
ABU_RS02465	COG0280	phosphate acetyltransferase
ABU_RS02470	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ABU_RS02480	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ABU_RS02485	COG2176	DNA-directed DNA polymerase activity
ABU_RS02515	COG2176	DNA-directed DNA polymerase activity
ABU_RS02525	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABU_RS02540	COG5002	protein histidine kinase activity
ABU_RS02585	COG1546	Belongs to the CinA family
ABU_RS02585	COG1058	Belongs to the CinA family
ABU_RS02590	COG0579	oxidoreductase
ABU_RS02595	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
ABU_RS02610	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ABU_RS02625	COG0667	Aldo Keto reductase
ABU_RS02630	COG0306	phosphate transporter
ABU_RS02645	COG0840	transmembrane signaling receptor activity
ABU_RS02650	COG0824	Thioesterase
ABU_RS02660	COG0501	Belongs to the peptidase M48B family
ABU_RS02665	COG1322	Protein conserved in bacteria
ABU_RS02685	COG0037	tRNA processing
ABU_RS02705	COG0052	Belongs to the universal ribosomal protein uS2 family
ABU_RS02710	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
ABU_RS02715	COG1136	(ABC) transporter
ABU_RS02725	COG0194	GDP metabolic process
ABU_RS02730	COG5001	Diguanylate cyclase
ABU_RS02730	COG5002	protein histidine kinase activity
ABU_RS02735	COG2217	Heavy metal translocating P-type atpase
ABU_RS02750	COG4608	Belongs to the ABC transporter superfamily
ABU_RS02755	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ABU_RS02760	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
ABU_RS02770	COG1434	Gram-negative-bacterium-type cell wall biogenesis
ABU_RS02775	COG1121	(ABC) transporter
ABU_RS02780	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ABU_RS02785	COG2996	Protein conserved in bacteria
ABU_RS02790	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
ABU_RS02810	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ABU_RS02820	COG0210	DNA helicase
ABU_RS02825	COG0569	domain protein
ABU_RS02825	COG0475	glutathione-regulated potassium exporter activity
ABU_RS02830	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ABU_RS02870	COG1331	Highly conserved protein containing a thioredoxin domain
ABU_RS02910	COG0525	valine-tRNA ligase activity
ABU_RS02920	COG4895	conserved protein (DUF2196)
ABU_RS02930	COG2814	Major facilitator Superfamily
ABU_RS02935	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
ABU_RS02955	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
ABU_RS02960	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ABU_RS02965	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
ABU_RS02975	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ABU_RS03005	COG0840	transmembrane signaling receptor activity
ABU_RS03010	COG0840	transmembrane signaling receptor activity
ABU_RS03030	COG0439	Biotin carboxylase
ABU_RS03035	COG2151	metal-sulfur cluster biosynthetic enzyme
ABU_RS03040	COG2166	iron-sulfur cluster assembly
ABU_RS03045	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ABU_RS03055	COG0396	ATPase activity
ABU_RS03060	COG0719	Fe-S assembly protein
ABU_RS03070	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
ABU_RS03070	COG2906	2 iron, 2 sulfur cluster binding
ABU_RS03070	COG0822	iron-sulfur transferase activity
ABU_RS03075	COG2239	Acts as a magnesium transporter
ABU_RS03080	COG3706	GGDEF domain
ABU_RS03085	COG0165	Argininosuccinate lyase
ABU_RS03090	COG0784	Response regulator, receiver
ABU_RS03090	COG0835	chemotaxis
ABU_RS03095	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ABU_RS03100	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ABU_RS03110	COG0556	nucleotide-excision repair
ABU_RS03120	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ABU_RS03140	COG0840	transmembrane signaling receptor activity
ABU_RS03160	COG4191	Histidine kinase
ABU_RS03165	COG0840	transmembrane signaling receptor activity
ABU_RS03170	COG0840	transmembrane signaling receptor activity
ABU_RS03180	COG0698	ribose 5-phosphate isomerase
ABU_RS03185	COG0681	Belongs to the peptidase S26 family
ABU_RS03190	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
ABU_RS03195	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
ABU_RS03200	COG0193	aminoacyl-tRNA hydrolase activity
ABU_RS03215	COG0860	N-Acetylmuramoyl-L-alanine amidase
ABU_RS03225	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
ABU_RS03240	COG0528	UMP kinase activity
ABU_RS03250	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ABU_RS03255	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ABU_RS03260	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ABU_RS03270	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
ABU_RS03275	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
ABU_RS03285	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
ABU_RS03295	COG0305	Participates in initiation and elongation during chromosome replication
ABU_RS03300	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
ABU_RS03310	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ABU_RS03330	COG0579	oxidoreductase
ABU_RS03335	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ABU_RS03340	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ABU_RS03345	COG0367	asparagine synthase
ABU_RS03380	COG1132	(ABC) transporter
ABU_RS03385	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
ABU_RS03385	COG2755	lipolytic protein G-D-S-L family
ABU_RS03390	COG0438	transferase activity, transferring glycosyl groups
ABU_RS03395	COG0367	asparagine synthase
ABU_RS03415	COG0482	sulfurtransferase activity
ABU_RS03420	COG0110	maltose O-acetyltransferase activity
ABU_RS03435	COG0438	transferase activity, transferring glycosyl groups
ABU_RS03440	COG0519	Catalyzes the synthesis of GMP from XMP
ABU_RS03440	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ABU_RS03465	COG0463	Glycosyl transferase, family 2
ABU_RS03470	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ABU_RS03475	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
ABU_RS03480	COG1086	Polysaccharide biosynthesis protein
ABU_RS03490	COG1793	dna ligase
ABU_RS03495	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ABU_RS03500	COG0133	tryptophan synthase activity
ABU_RS03510	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ABU_RS03520	COG0848	biopolymer transport protein
ABU_RS03540	COG1136	(ABC) transporter
ABU_RS03540	COG0577	efflux transmembrane transporter activity
ABU_RS03545	COG1136	(ABC) transporter
ABU_RS03545	COG0577	efflux transmembrane transporter activity
ABU_RS03590	COG0735	belongs to the Fur family
ABU_RS03600	COG0114	fumarate hydratase activity
ABU_RS03610	COG3920	Histidine kinase
ABU_RS03615	COG0784	Response regulator, receiver
ABU_RS03620	COG4774	siderophore transport
ABU_RS03625	COG3128	pkhd-type hydroxylase
ABU_RS03635	COG4771	TonB-dependent receptor
ABU_RS03640	COG2819	hydrolase of the alpha beta superfamily
ABU_RS03645	COG0500	methyltransferase
ABU_RS03665	COG1966	Carbon starvation protein
ABU_RS03670	COG0012	GTP binding
ABU_RS03690	COG3123	guanosine phosphorylase activity
ABU_RS03705	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ABU_RS03710	COG0585	pseudouridine synthase activity
ABU_RS03720	COG0840	transmembrane signaling receptor activity
ABU_RS03725	COG0632	four-way junction helicase activity
ABU_RS03730	COG1181	Belongs to the D-alanine--D-alanine ligase family
ABU_RS03760	COG0051	transcription antitermination factor activity, RNA binding
ABU_RS03765	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
ABU_RS03770	COG0088	Forms part of the polypeptide exit tunnel
ABU_RS03775	COG0089	rRNA binding
ABU_RS03780	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
ABU_RS03785	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
ABU_RS03790	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
ABU_RS03795	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
ABU_RS03800	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ABU_RS03805	COG0255	Belongs to the universal ribosomal protein uL29 family
ABU_RS03810	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ABU_RS03815	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
ABU_RS03820	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
ABU_RS03825	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
ABU_RS03830	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ABU_RS03835	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
ABU_RS03840	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
ABU_RS03845	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
ABU_RS03850	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ABU_RS03855	COG0200	Binds to the 23S rRNA
ABU_RS03860	COG0201	protein transport
ABU_RS03865	COG0024	Methionine aminopeptidase
ABU_RS03870	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ABU_RS03875	COG1573	uracil-dna glycosylase
ABU_RS03885	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
ABU_RS03895	COG1032	radical SAM domain protein
ABU_RS03905	COG0563	adenylate kinase activity
ABU_RS03920	COG1064	alcohol dehydrogenase
ABU_RS03925	COG1979	alcohol dehydrogenase
ABU_RS03930	COG0840	transmembrane signaling receptor activity
ABU_RS03935	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
ABU_RS03940	COG0322	excinuclease ABC activity
ABU_RS03945	COG0840	transmembrane signaling receptor activity
ABU_RS03955	COG0840	transmembrane signaling receptor activity
ABU_RS03960	COG0840	transmembrane signaling receptor activity
ABU_RS03965	COG0745	RESPONSE REGULATOR receiver
ABU_RS03975	COG0784	Response regulator, receiver
ABU_RS03975	COG2205	protein histidine kinase activity
ABU_RS04030	COG0829	nickel cation binding
ABU_RS04035	COG0831	urea catabolic process
ABU_RS04035	COG0832	Belongs to the urease beta subunit family
ABU_RS04040	COG0804	urea catabolic process
ABU_RS04045	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
ABU_RS04055	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
ABU_RS04105	COG3706	GGDEF domain
ABU_RS04110	COG0708	Exodeoxyribonuclease III
ABU_RS04130	COG3040	lipid binding
ABU_RS04145	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ABU_RS04155	COG2200	EAL domain
ABU_RS04160	COG3279	Response regulator of the LytR AlgR family
ABU_RS04165	COG3275	phosphorelay sensor kinase activity
ABU_RS04170	COG1233	COG1233 Phytoene dehydrogenase and related
ABU_RS04175	COG0415	Belongs to the DNA photolyase family
ABU_RS04195	COG0166	Belongs to the GPI family
ABU_RS04240	COG0840	transmembrane signaling receptor activity
ABU_RS04245	COG1942	4-Oxalocrotonate Tautomerase
ABU_RS04250	COG0583	DNA-binding transcription factor activity
ABU_RS04255	COG0134	indole-3-glycerol-phosphate synthase activity
ABU_RS04265	COG0727	PFAM Uncharacterised protein family (UPF0153)
ABU_RS04270	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
ABU_RS04280	COG0674	pyruvate-flavodoxin oxidoreductase activity
ABU_RS04280	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
ABU_RS04285	COG1013	pyruvate-flavodoxin oxidoreductase activity
ABU_RS04295	COG2176	DNA-directed DNA polymerase activity
ABU_RS04300	COG0135	phosphoribosylanthranilate isomerase activity
ABU_RS04305	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ABU_RS04325	COG1666	GTP binding
ABU_RS04335	COG2363	Small membrane protein
ABU_RS04340	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
ABU_RS04355	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ABU_RS04360	COG0750	zinc metalloprotease
ABU_RS04365	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ABU_RS04370	COG1028	Short-chain dehydrogenase reductase Sdr
ABU_RS04375	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABU_RS04385	COG0167	dihydroorotate dehydrogenase activity
ABU_RS04390	COG1132	(ABC) transporter
ABU_RS04395	COG0728	peptidoglycan biosynthetic process
ABU_RS04410	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
ABU_RS04420	COG3340	Belongs to the peptidase S51 family
ABU_RS04425	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
ABU_RS04430	COG3150	esterase
ABU_RS04435	COG1858	cytochrome C peroxidase
ABU_RS04450	COG0552	protein localization to endoplasmic reticulum
ABU_RS04455	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ABU_RS04460	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ABU_RS04465	COG1418	mRNA catabolic process
ABU_RS04470	COG0742	ribosomal rna small subunit methyltransferase
ABU_RS04475	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABU_RS04500	COG0300	oxidoreductase activity
ABU_RS04515	COG3258	Cytochrome c
ABU_RS04530	COG5002	protein histidine kinase activity
ABU_RS04535	COG0157	Belongs to the NadC ModD family
ABU_RS04545	COG1610	YqeY-like protein
ABU_RS04550	COG0488	(ABC) transporter
ABU_RS04560	COG0492	ferredoxin-NADP+ reductase activity
ABU_RS04565	COG0596	Alpha beta hydrolase
ABU_RS04615	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ABU_RS04615	COG0519	Catalyzes the synthesis of GMP from XMP
ABU_RS04620	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
ABU_RS04635	COG0436	Aminotransferase
ABU_RS04640	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
ABU_RS04675	COG2223	nitrite transmembrane transporter activity
ABU_RS04685	COG0310	cobalt ion transport
ABU_RS04705	COG2831	hemolysin activation secretion protein
ABU_RS04710	COG3210	domain, Protein
ABU_RS04710	COG3210	domain, Protein
ABU_RS04775	COG0628	permease
ABU_RS04800	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ABU_RS04810	COG0840	transmembrane signaling receptor activity
ABU_RS04815	COG0405	Gamma-glutamyltransferase
ABU_RS04820	COG0730	response to heat
ABU_RS04825	COG1045	serine acetyltransferase
ABU_RS04830	COG1166	arginine decarboxylase activity
ABU_RS04835	COG0124	histidyl-tRNA synthetase
ABU_RS04840	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
ABU_RS04845	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
ABU_RS04850	COG0163	prenyltransferase activity
ABU_RS04860	COG0359	binds to the 23S rRNA
ABU_RS04865	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
ABU_RS04870	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
ABU_RS04880	COG0084	hydrolase, TatD family'
ABU_RS04890	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ABU_RS04895	COG0131	Imidazoleglycerol-phosphate dehydratase
ABU_RS04900	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ABU_RS04915	COG0218	Necessary for normal cell division and for the maintenance of normal septation
ABU_RS04920	COG0456	acetyltransferase
ABU_RS04940	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
ABU_RS04945	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABU_RS04970	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABU_RS04980	COG3437	response regulator, receiver
ABU_RS04980	COG0784	Response regulator, receiver
ABU_RS04990	COG0768	penicillin binding
ABU_RS05010	COG2884	Cell division ATP-binding protein ftsE
ABU_RS05015	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ABU_RS05025	COG0564	pseudouridine synthase activity
ABU_RS05030	COG0772	Belongs to the SEDS family
ABU_RS05040	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ABU_RS05045	COG3123	guanosine phosphorylase activity
ABU_RS05065	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ABU_RS05070	COG0066	3-isopropylmalate dehydratase activity
ABU_RS05075	COG0473	3-isopropylmalate dehydrogenase activity
ABU_RS05090	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ABU_RS05095	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ABU_RS05100	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
ABU_RS05105	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
ABU_RS05110	COG0202	RNA polymerase activity
ABU_RS05115	COG0203	ribosomal protein L17
ABU_RS05120	COG0154	amidase activity
ABU_RS05125	COG0517	IMP dehydrogenase activity
ABU_RS05125	COG0516	GMP reductase activity
ABU_RS05175	COG0484	heat shock protein binding
ABU_RS05190	COG3290	protein histidine kinase activity
ABU_RS05195	COG0784	Response regulator, receiver
ABU_RS05195	COG2205	protein histidine kinase activity
ABU_RS05205	COG1119	ATPase activity
ABU_RS05240	COG1733	regulation of RNA biosynthetic process
ABU_RS05245	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABU_RS05255	COG2076	Multidrug Resistance protein
ABU_RS05270	COG1881	PFAM PEBP family protein
ABU_RS05275	COG0583	DNA-binding transcription factor activity
ABU_RS05280	COG2855	membrane
ABU_RS05295	COG1733	regulation of RNA biosynthetic process
ABU_RS05300	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABU_RS05310	COG1902	pentaerythritol trinitrate reductase activity
ABU_RS05320	COG0778	Nitroreductase
ABU_RS05330	COG0488	(ABC) transporter
ABU_RS05335	COG1607	acyl-coa hydrolase
ABU_RS05345	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ABU_RS05350	COG0754	glutathionylspermidine amidase activity
ABU_RS05365	COG3177	Filamentation induced by cAMP protein fic
ABU_RS05370	COG3177	Filamentation induced by cAMP protein fic
ABU_RS05375	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
ABU_RS05385	COG1496	oxidoreductase activity
ABU_RS05390	COG0281	malic enzyme
ABU_RS05390	COG0280	phosphate acetyltransferase
ABU_RS05395	COG0788	formyltetrahydrofolate deformylase activity
ABU_RS05400	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ABU_RS05425	COG0745	RESPONSE REGULATOR receiver
ABU_RS05435	COG0330	HflC and HflK could
ABU_RS05455	COG1271	oxidase subunit
ABU_RS05485	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
ABU_RS05495	COG0546	phosphoglycolate phosphatase activity
ABU_RS05515	COG4771	TonB-dependent receptor
ABU_RS05525	COG1122	ATPase activity
ABU_RS05535	COG0406	alpha-ribazole phosphatase activity
ABU_RS05540	COG1132	(ABC) transporter
ABU_RS05550	COG0745	RESPONSE REGULATOR receiver
ABU_RS05555	COG0642	Histidine kinase
ABU_RS05590	COG0513	Belongs to the DEAD box helicase family
ABU_RS05600	COG0745	RESPONSE REGULATOR receiver
ABU_RS05635	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ABU_RS05645	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ABU_RS05650	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ABU_RS05660	COG0521	Mo-molybdopterin cofactor biosynthetic process
ABU_RS05665	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
ABU_RS05710	COG0488	(ABC) transporter
ABU_RS05725	COG0243	molybdopterin cofactor binding
ABU_RS05740	COG1193	negative regulation of DNA recombination
ABU_RS05745	COG1253	flavin adenine dinucleotide binding
ABU_RS05760	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ABU_RS05765	COG0004	ammonium transporteR
ABU_RS05780	COG0248	Ppx GppA phosphatase
ABU_RS05790	COG0028	Belongs to the TPP enzyme family
ABU_RS05795	COG0440	acetolactate synthase activity
ABU_RS05800	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABU_RS05805	COG1674	ftsk spoiiie
ABU_RS05805	COG1196	nuclear chromosome segregation
ABU_RS05810	COG0745	RESPONSE REGULATOR receiver
ABU_RS05815	COG0642	Histidine kinase
ABU_RS05860	COG3012	SEC-C Motif Domain Protein
ABU_RS05865	COG0420	3'-5' exonuclease activity
ABU_RS05870	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
ABU_RS05880	COG1160	GTP binding
ABU_RS05885	COG0659	secondary active sulfate transmembrane transporter activity
ABU_RS05905	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
ABU_RS05915	COG1185	polyribonucleotide nucleotidyltransferase activity
ABU_RS05925	COG2198	Histidine kinase
ABU_RS05925	COG0643	Histidine kinase
ABU_RS05930	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ABU_RS05935	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
ABU_RS05940	COG2201	protein-glutamate methylesterase activity
ABU_RS05950	COG2223	nitrite transmembrane transporter activity
ABU_RS05955	COG0582	viral genome integration into host DNA
ABU_RS05975	COG0339	signal peptide processing
ABU_RS05980	COG2890	protein-(glutamine-N5) methyltransferase activity
ABU_RS05985	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ABU_RS05990	COG0494	nUDIX hydrolase
ABU_RS05995	COG0527	aspartate kinase activity
ABU_RS06010	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ABU_RS06020	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ABU_RS06035	COG3040	lipid binding
ABU_RS06045	COG4221	oxidoreductase activity
ABU_RS06050	COG0287	Prephenate dehydrogenase
ABU_RS06055	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ABU_RS06060	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
ABU_RS06065	COG0612	Peptidase, M16
ABU_RS06070	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ABU_RS06095	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
ABU_RS06105	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABU_RS06105	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABU_RS06130	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
ABU_RS06155	COG0751	glycine-tRNA ligase activity
ABU_RS06170	COG0357	Ribosomal RNA small subunit methyltransferase G
ABU_RS06175	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
ABU_RS06180	COG0113	porphobilinogen synthase activity
ABU_RS06185	COG0784	Response regulator, receiver
ABU_RS06185	COG4191	Histidine kinase
ABU_RS06190	COG0745	RESPONSE REGULATOR receiver
ABU_RS06200	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABU_RS06200	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
ABU_RS06205	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ABU_RS06210	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ABU_RS06225	COG1663	tetraacyldisaccharide 4'-kinase activity
ABU_RS06235	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ABU_RS06260	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ABU_RS06265	COG0805	protein transport
ABU_RS06270	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
ABU_RS06275	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ABU_RS06315	COG0247	lactate metabolic process
ABU_RS06315	COG2181	nitrate reductase activity
ABU_RS06320	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
ABU_RS06345	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
ABU_RS06350	COG2200	EAL domain
ABU_RS06350	COG2199	diguanylate cyclase activity
ABU_RS06350	COG3287	FIST C domain
ABU_RS06355	COG1137	ATPase activity
ABU_RS06360	COG0802	atpase or kinase
ABU_RS06365	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ABU_RS06380	COG0137	argininosuccinate synthase activity
ABU_RS06385	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABU_RS06390	COG1696	Membrane protein involved in D-alanine export
ABU_RS06400	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABU_RS06410	COG0659	secondary active sulfate transmembrane transporter activity
ABU_RS06425	COG0569	domain protein
ABU_RS06430	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ABU_RS06435	COG0745	RESPONSE REGULATOR receiver
ABU_RS06440	COG2205	protein histidine kinase activity
ABU_RS06455	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ABU_RS06460	COG0484	heat shock protein binding
ABU_RS06465	COG0133	tryptophan synthase activity
ABU_RS06485	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABU_RS06495	COG2199	diguanylate cyclase activity
ABU_RS06500	COG0500	methyltransferase
ABU_RS06510	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ABU_RS06510	COG1333	cytochrome c biogenesis protein
ABU_RS06515	COG2195	Cleaves the N-terminal amino acid of tripeptides
ABU_RS06525	COG0840	transmembrane signaling receptor activity
ABU_RS06535	COG0653	protein targeting
ABU_RS06540	COG4591	ABC-type transport system involved in lipoprotein release permease component
ABU_RS06550	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ABU_RS06560	COG0039	L-malate dehydrogenase activity
ABU_RS06585	COG0275	rRNA processing
ABU_RS06595	COG0776	regulation of translation
ABU_RS06605	COG0582	viral genome integration into host DNA
ABU_RS06640	COG1204	response to ionizing radiation
ABU_RS06750	COG1959	2 iron, 2 sulfur cluster binding
ABU_RS06765	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
ABU_RS06765	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ABU_RS06775	COG2201	protein-glutamate methylesterase activity
ABU_RS06790	COG0484	heat shock protein binding
ABU_RS06795	COG0789	Transcriptional regulator
ABU_RS06805	COG1131	(ABC) transporter
ABU_RS06810	COG0842	Transport permease protein
ABU_RS06815	COG0842	Transport permease protein
ABU_RS06820	COG0861	Integral membrane protein TerC family
ABU_RS06825	COG1114	Component of the transport system for branched-chain amino acids
ABU_RS06845	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ABU_RS06855	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
ABU_RS06865	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABU_RS06870	COG4773	Receptor
ABU_RS06880	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
ABU_RS06905	COG1393	Belongs to the ArsC family
ABU_RS06935	COG0488	(ABC) transporter
ABU_RS06945	COG2171	N-acyltransferase activity
ABU_RS06950	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ABU_RS06960	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ABU_RS06990	COG0309	Hydrogenase expression formation protein (HypE)
ABU_RS07000	COG2084	Dehydrogenase
ABU_RS07005	COG1401	restriction endodeoxyribonuclease activity
ABU_RS07015	COG0409	Hydrogenase expression formation protein
ABU_RS07020	COG0298	carbon dioxide binding
ABU_RS07025	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
ABU_RS07035	COG0840	transmembrane signaling receptor activity
ABU_RS07045	COG2081	HI0933 family
ABU_RS07050	COG2354	Protein conserved in bacteria
ABU_RS07070	COG2814	Major facilitator Superfamily
ABU_RS07080	COG0301	tRNA thio-modification
ABU_RS07080	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ABU_RS07100	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
ABU_RS07105	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
ABU_RS07110	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
ABU_RS07115	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
ABU_RS07120	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
ABU_RS07125	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
ABU_RS07140	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
ABU_RS07155	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
ABU_RS07160	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
ABU_RS07180	COG1049	propionate catabolic process, 2-methylcitrate cycle
ABU_RS07190	COG4251	negative regulation of phosphorylation
ABU_RS07190	COG3706	GGDEF domain
ABU_RS07190	COG2203	Gaf domain
ABU_RS07190	COG5001	Diguanylate cyclase
ABU_RS07195	COG0217	transcriptional regulatory protein
ABU_RS07200	COG2853	Lipoprotein
ABU_RS07215	COG1611	Belongs to the LOG family
ABU_RS07220	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ABU_RS07235	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
ABU_RS07270	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABU_RS07285	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
ABU_RS07320	COG3135	benzoate transporter
ABU_RS07325	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ABU_RS07330	COG2258	MOSC domain
ABU_RS07335	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ABU_RS07340	COG0095	Lipoate-protein ligase
ABU_RS07345	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
ABU_RS07350	COG0508	dehydrogenase complex catalyzes the overall conversion of
ABU_RS07355	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABU_RS07360	COG1492	cobalamin metabolic process
ABU_RS07365	COG4773	Receptor
ABU_RS07380	COG0513	Belongs to the DEAD box helicase family
ABU_RS07405	COG1944	ATP diphosphatase activity
ABU_RS07420	COG0840	transmembrane signaling receptor activity
ABU_RS07425	COG0328	RNA-DNA hybrid ribonuclease activity
ABU_RS07430	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ABU_RS07460	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
ABU_RS07470	COG0437	4 iron, 4 sulfur cluster binding
ABU_RS07475	COG3383	formate dehydrogenase (NAD+) activity
ABU_RS07480	COG3383	formate dehydrogenase (NAD+) activity
ABU_RS07480	COG0243	molybdopterin cofactor binding
ABU_RS07530	COG1305	Transglutaminase-like
ABU_RS07540	COG0437	4 iron, 4 sulfur cluster binding
ABU_RS07545	COG3383	formate dehydrogenase (NAD+) activity
ABU_RS07545	COG0243	molybdopterin cofactor binding
ABU_RS07555	COG0709	Synthesizes selenophosphate from selenide and ATP
ABU_RS07610	COG1921	L-seryl-tRNASec selenium transferase activity
ABU_RS07685	COG1078	dGTPase activity
ABU_RS07690	COG5001	Diguanylate cyclase
ABU_RS07690	COG5002	protein histidine kinase activity
ABU_RS07695	COG0259	pyridoxamine-phosphate oxidase activity
ABU_RS07705	COG0513	Belongs to the DEAD box helicase family
ABU_RS07725	COG0326	Molecular chaperone. Has ATPase activity
ABU_RS07730	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
ABU_RS07750	COG2995	paraquat-inducible protein a
ABU_RS07765	COG5002	protein histidine kinase activity
ABU_RS07765	COG5001	Diguanylate cyclase
ABU_RS07795	COG4335	DNA alkylation repair
ABU_RS07840	COG1595	DNA-templated transcription, initiation
ABU_RS07845	COG0010	Belongs to the arginase family
ABU_RS07850	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ABU_RS07855	COG2207	Transcriptional regulator
ABU_RS07880	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ABU_RS07885	COG0668	transmembrane transport
ABU_RS07890	COG1227	inorganic diphosphatase activity
ABU_RS07905	COG1027	Aspartate ammonia-lyase
ABU_RS07910	COG0745	RESPONSE REGULATOR receiver
ABU_RS07920	COG1115	amino acid carrier protein
ABU_RS07925	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ABU_RS07930	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
ABU_RS07935	COG1047	Peptidyl-prolyl cis-trans
ABU_RS07950	COG0823	Involved in the tonB-independent uptake of proteins
ABU_RS07960	COG0848	biopolymer transport protein
ABU_RS07965	COG0811	peptide transport
ABU_RS07970	COG0355	proton-transporting ATP synthase activity, rotational mechanism
ABU_RS07975	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
ABU_RS07980	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
ABU_RS07985	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
ABU_RS07990	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
ABU_RS07995	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
ABU_RS08005	COG1475	DNA binding
ABU_RS08010	COG1192	Involved in chromosome partitioning
ABU_RS08030	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
ABU_RS08035	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
ABU_RS08040	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
ABU_RS08045	COG0211	Belongs to the bacterial ribosomal protein bL27 family
ABU_RS08050	COG0261	This protein binds to 23S rRNA in the presence of protein L20
ABU_RS08055	COG0358	DNA primase activity
ABU_RS08065	COG0571	ribonuclease III activity
ABU_RS08070	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
ABU_RS08080	COG0501	Belongs to the peptidase M48B family
ABU_RS08100	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
ABU_RS08110	COG0706	membrane insertase activity
ABU_RS08115	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
ABU_RS08125	COG0230	Belongs to the bacterial ribosomal protein bL34 family
ABU_RS08130	COG0542	response to heat
ABU_RS08135	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
ABU_RS08145	COG2326	polyphosphate kinase activity
ABU_RS08155	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ABU_RS08160	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ABU_RS08165	COG0179	Fumarylacetoacetate (FAA) hydrolase
ABU_RS08190	COG0138	bifunctional purine biosynthesis protein purh
ABU_RS08195	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ABU_RS08205	COG0739	heme binding
ABU_RS08210	COG0302	gtp cyclohydrolase
ABU_RS08215	COG0598	Magnesium transport protein CorA
ABU_RS08485	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ABU_RS08495	COG0606	chelatase, subunit chli
ABU_RS08505	COG0242	peptide deformylase activity
ABU_RS08510	COG0740	serine-type endopeptidase activity
ABU_RS08515	COG0544	peptidyl-prolyl cis-trans isomerase activity
ABU_RS08540	COG4974	Belongs to the 'phage' integrase family
ABU_RS08580	COG1196	nuclear chromosome segregation
ABU_RS08590	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ABU_RS08615	COG0626	cystathionine gamma-synthase activity
ABU_RS08630	COG0840	transmembrane signaling receptor activity
ABU_RS08640	COG0784	Response regulator, receiver
ABU_RS08640	COG3437	response regulator, receiver
ABU_RS08645	COG0840	transmembrane signaling receptor activity
ABU_RS08680	COG0745	RESPONSE REGULATOR receiver
ABU_RS08690	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
ABU_RS08705	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
ABU_RS08710	COG1858	cytochrome C peroxidase
ABU_RS08740	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
ABU_RS08745	COG0840	transmembrane signaling receptor activity
ABU_RS08755	COG0628	permease
ABU_RS08780	COG0351	phosphomethylpyrimidine kinase
ABU_RS08785	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
ABU_RS08800	COG0348	domain, Protein
ABU_RS08810	COG2207	Transcriptional regulator
ABU_RS08810	COG4753	response regulator
ABU_RS08825	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ABU_RS08845	COG0716	FMN binding
ABU_RS08860	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
ABU_RS08865	COG0159	tryptophan synthase activity
ABU_RS08870	COG0038	chloride channel
ABU_RS08875	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
ABU_RS08880	COG2255	four-way junction helicase activity
ABU_RS08885	COG0628	permease
ABU_RS08925	COG0731	radical SAM domain protein
ABU_RS08930	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ABU_RS08940	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ABU_RS08955	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
ABU_RS08965	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ABU_RS08975	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
ABU_RS08985	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
ABU_RS08985	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
ABU_RS08990	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
ABU_RS08995	COG1368	sulfuric ester hydrolase activity
ABU_RS09000	COG0859	PFAM glycosyl transferase family 9
ABU_RS09010	COG0859	PFAM glycosyl transferase family 9
ABU_RS09020	COG2194	sulfuric ester hydrolase activity
ABU_RS09035	COG1696	Membrane protein involved in D-alanine export
ABU_RS09040	COG0297	glycogen (starch) synthase activity
ABU_RS09045	COG0463	Glycosyl transferase, family 2
ABU_RS09050	COG0438	transferase activity, transferring glycosyl groups
ABU_RS09085	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
ABU_RS09095	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ABU_RS09110	COG0859	PFAM glycosyl transferase family 9
ABU_RS09120	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ABU_RS09130	COG0493	'glutamate synthase
ABU_RS09135	COG0069	glutamate synthase activity
ABU_RS09135	COG0067	glutamate synthase
ABU_RS09135	COG0070	glutamate synthase
ABU_RS09150	COG0840	transmembrane signaling receptor activity
ABU_RS09155	COG0840	transmembrane signaling receptor activity
ABU_RS09165	COG1739	Uncharacterized protein family UPF0029
ABU_RS09175	COG0196	riboflavin kinase activity
ABU_RS09180	COG2226	methyltransferase
ABU_RS09185	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ABU_RS09195	COG0277	FAD linked oxidase domain protein
ABU_RS09200	COG1295	ribonuclease BN
ABU_RS09210	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
ABU_RS09220	COG2877	3-deoxy-8-phosphooctulonate synthase activity
ABU_RS09225	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
ABU_RS09230	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ABU_RS09235	COG0284	orotidine-5'-phosphate decarboxylase activity
ABU_RS09260	COG1918	ferrous iron import across plasma membrane
ABU_RS09265	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
ABU_RS09265	COG1918	ferrous iron import across plasma membrane
ABU_RS09290	COG2217	Heavy metal translocating P-type atpase
ABU_RS09300	COG4773	Receptor
ABU_RS09310	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABU_RS09325	COG1278	Cold shock
ABU_RS09330	COG2207	Transcriptional regulator
ABU_RS09330	COG4753	response regulator
ABU_RS09335	COG3852	Histidine kinase
ABU_RS09385	COG0450	alkyl hydroperoxide reductase
ABU_RS09390	COG3118	belongs to the thioredoxin family
ABU_RS09405	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
ABU_RS09410	COG0085	RNA polymerase activity
ABU_RS09415	COG0222	ribosome binding
ABU_RS09420	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
ABU_RS09425	COG0081	regulation of translation
ABU_RS09430	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
ABU_RS09435	COG0250	Participates in transcription elongation, termination and antitermination
ABU_RS09450	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ABU_RS09455	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
ABU_RS09485	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ABU_RS09490	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
ABU_RS09495	COG0444	Belongs to the ABC transporter superfamily
ABU_RS09500	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ABU_RS09505	COG0174	glutamine synthetase
ABU_RS09515	COG0314	molybdopterin synthase activity
ABU_RS09525	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
ABU_RS09530	COG1968	undecaprenyl-diphosphatase activity
ABU_RS09535	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
ABU_RS09540	COG0772	Belongs to the SEDS family
ABU_RS09550	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ABU_RS09590	COG0542	response to heat
ABU_RS09595	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ABU_RS09600	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
ABU_RS09615	COG2030	dehydratase
ABU_RS09635	COG0840	transmembrane signaling receptor activity
ABU_RS09640	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
ABU_RS09665	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABU_RS09675	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ABU_RS09680	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ABU_RS09685	COG1157	protein secretion by the type III secretion system
ABU_RS09695	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ABU_RS09715	COG1677	Flagellar hook-basal body complex protein FliE
ABU_RS09725	COG0455	bacterial-type flagellum organization
ABU_RS09730	COG1419	protein localization to endoplasmic reticulum
ABU_RS09745	COG3951	Flagellar rod assembly protein muramidase FlgJ
ABU_RS09770	COG1749	Flagellar hook protein flgE
ABU_RS09775	COG4786	Flagellar basal body rod
ABU_RS09785	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ABU_RS09795	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ABU_RS09800	COG1766	The M ring may be actively involved in energy transduction
ABU_RS09805	COG1815	bacterial-type flagellum-dependent cell motility
ABU_RS09810	COG4786	Flagellar basal body rod
ABU_RS09820	COG0745	RESPONSE REGULATOR receiver
ABU_RS09840	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ABU_RS09850	COG0228	four-way junction DNA binding
ABU_RS09855	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ABU_RS09860	COG0564	pseudouridine synthase activity
ABU_RS09865	COG1519	Transferase
ABU_RS09875	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ABU_RS09880	COG0752	glycyl-tRNA synthetase alpha subunit
ABU_RS09890	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
ABU_RS09900	COG0826	peptidase U32
ABU_RS09905	COG0840	transmembrane signaling receptor activity
ABU_RS09910	COG0497	DNA recombination
ABU_RS09915	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ABU_RS09920	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
ABU_RS09925	COG0049	tRNA binding
ABU_RS09930	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ABU_RS09940	COG2814	Major facilitator Superfamily
ABU_RS09945	COG4771	TonB-dependent receptor
ABU_RS09960	COG1116	anion transmembrane transporter activity
ABU_RS09965	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABU_RS10005	COG0512	Glutamine amidotransferase of anthranilate synthase
ABU_RS10010	COG1840	ABC-type Fe3 transport system, periplasmic component
ABU_RS10015	COG1178	ABC-type Fe3 transport system permease component
ABU_RS10030	COG4774	siderophore transport
ABU_RS10070	COG2183	response to ionizing radiation
ABU_RS10080	COG0251	oxidation-reduction process
ABU_RS10095	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABU_RS10105	COG0586	Pfam SNARE associated Golgi protein
ABU_RS10110	COG0335	large ribosomal subunit rRNA binding
ABU_RS10115	COG0336	Belongs to the RNA methyltransferase TrmD family
ABU_RS10125	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
ABU_RS10130	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ABU_RS10135	COG0356	it plays a direct role in the translocation of protons across the membrane
ABU_RS10145	COG4773	Receptor
ABU_RS10155	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
ABU_RS10165	COG0157	Belongs to the NadC ModD family
ABU_RS10180	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
ABU_RS10190	COG0083	homoserine kinase activity
ABU_RS10200	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
ABU_RS10205	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
ABU_RS10210	COG0779	Required for maturation of 30S ribosomal subunits
ABU_RS10215	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABU_RS10215	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABU_RS10220	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
ABU_RS10225	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ABU_RS10230	COG0539	negative regulation of cytoplasmic translation
ABU_RS10230	COG1185	polyribonucleotide nucleotidyltransferase activity
ABU_RS10235	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
ABU_RS10240	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ABU_RS10245	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABU_RS10245	COG0072	phenylalanine-tRNA ligase activity
ABU_RS10250	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
ABU_RS10255	COG0537	adenosine 5'-monophosphoramidase activity
ABU_RS10260	COG0825	malonyl-CoA metabolic process
ABU_RS10265	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ABU_RS10270	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABU_RS10280	COG0602	queuosine metabolic process
ABU_RS10290	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
ABU_RS10300	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ABU_RS10310	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ABU_RS10320	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ABU_RS10325	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ABU_RS10330	COG1074	ATP-dependent DNA helicase activity
ABU_RS10340	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ABU_RS10385	COG3278	Belongs to the heme-copper respiratory oxidase family
ABU_RS10390	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
ABU_RS10395	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
ABU_RS10400	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
ABU_RS10415	COG1242	4 iron, 4 sulfur cluster binding
ABU_RS10420	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
ABU_RS10425	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ABU_RS10430	COG0492	ferredoxin-NADP+ reductase activity
ABU_RS10435	COG3118	belongs to the thioredoxin family
ABU_RS10440	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
ABU_RS10465	COG0642	Histidine kinase
ABU_RS10470	COG0745	RESPONSE REGULATOR receiver
ABU_RS10480	COG0129	dihydroxy-acid dehydratase activity
ABU_RS10540	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABU_RS10555	COG0585	pseudouridine synthase activity
ABU_RS10570	COG0793	Belongs to the peptidase S41A family
ABU_RS10575	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
ABU_RS10580	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ABU_RS10585	COG0047	phosphoribosylformylglycinamidine synthase activity
ABU_RS10595	COG0204	Acyl-transferase
ABU_RS10600	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
ABU_RS10605	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ABU_RS10610	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ABU_RS10615	COG0018	arginyl-trna synthetase
ABU_RS10625	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ABU_RS10635	COG0126	phosphoglycerate kinase activity
ABU_RS10640	COG0149	triose-phosphate isomerase activity
ABU_RS10645	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
ABU_RS10650	COG0019	diaminopimelate decarboxylase activity
ABU_RS10655	COG0077	Prephenate dehydratase
ABU_RS10655	COG1605	Chorismate mutase
ABU_RS10660	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ABU_RS10665	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
ABU_RS10675	COG0424	maF-like protein
ABU_RS10690	COG0791	NLP P60 protein
ABU_RS10705	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
ABU_RS10710	COG1012	belongs to the aldehyde dehydrogenase family
ABU_RS10720	COG1704	LemA family
ABU_RS10735	COG0546	phosphoglycolate phosphatase activity
ABU_RS10740	COG0783	Belongs to the Dps family
ABU_RS10755	COG2814	Major facilitator Superfamily
ABU_RS10770	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABU_RS10775	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABU_RS10795	COG1595	DNA-templated transcription, initiation
ABU_RS10805	COG2081	HI0933 family
ABU_RS10820	COG1959	2 iron, 2 sulfur cluster binding
ABU_RS10835	COG0175	sulfate reduction
ABU_RS10840	COG0175	sulfate reduction
ABU_RS10845	COG2895	sulfate adenylyltransferase (ATP) activity
ABU_RS10860	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
ABU_RS10890	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
ABU_RS10905	COG4232	protein-disulfide reductase activity
ABU_RS10910	COG0189	ligase activity
ABU_RS10925	COG2199	diguanylate cyclase activity
ABU_RS10925	COG2200	EAL domain
ABU_RS10925	COG3287	FIST C domain
ABU_RS10930	COG0688	phosphatidylethanolamine metabolic process
ABU_RS10940	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
ABU_RS10945	COG0443	Heat shock 70 kDa protein
ABU_RS10950	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
ABU_RS10965	COG0101	tRNA pseudouridine synthase activity
ABU_RS10980	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
ABU_RS10985	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ABU_RS10990	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
ABU_RS11005	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
ABU_RS11025	COG0445	tRNA wobble uridine modification
ABU_RS11045	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
ABU_RS11050	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABU_RS11055	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ABU_RS11060	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABU_RS11065	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ABU_RS11075	COG1252	NADH dehydrogenase
ABU_RS11080	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
ABU_RS11090	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABU_RS11105	COG2814	Major facilitator Superfamily
ABU_RS11110	COG0659	secondary active sulfate transmembrane transporter activity
ABU_RS11130	COG1222	aaa ATPase
ABU_RS11140	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
ABU_RS11145	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ABU_RS11160	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
ABU_RS11175	COG0148	phosphopyruvate hydratase activity
ABU_RS11180	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
ABU_RS11190	COG1086	Polysaccharide biosynthesis protein
ABU_RS11195	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ABU_RS11200	COG1083	cytidylyl-transferase
ABU_RS11205	COG2089	acid synthase
ABU_RS11225	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
ABU_RS11245	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ABU_RS11255	COG0348	domain, Protein
ABU_RS11260	COG0504	CTP synthase activity
ABU_RS11265	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ABU_RS11285	COG0587	DNA-directed DNA polymerase activity
ABU_RS11290	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
ABU_RS11305	COG0315	cyclic pyranopterin monophosphate synthase activity
ABU_RS11310	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ABU_RS11340	COG0670	Belongs to the BI1 family
ABU_RS11345	COG0352	thiamine-phosphate diphosphorylase activity
ABU_RS11355	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ABU_RS11360	COG0233	cytoplasmic translational termination
ABU_RS11365	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
ABU_RS11385	COG3022	response to hydroperoxide
ABU_RS11400	COG1408	metallophosphoesterase
ABU_RS11410	COG4774	siderophore transport
ABU_RS11415	COG2207	Transcriptional regulator
ABU_RS11415	COG1609	Transcriptional regulator
ABU_RS11420	COG0071	Belongs to the small heat shock protein (HSP20) family
ABU_RS11425	COG2703	oxygen carrier activity
ABU_RS11430	COG0840	transmembrane signaling receptor activity
ABU_RS11450	COG1305	Transglutaminase-like
ABU_RS11460	COG4208	sulfate ABC transporter
ABU_RS11465	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ABU_RS11475	COG3287	FIST C domain
ABU_RS11475	COG2200	EAL domain
ABU_RS11475	COG2199	diguanylate cyclase activity
ABU_RS11510	COG2308	Evidence 4 Homologs of previously reported genes of
ABU_RS11515	COG1217	gtp-binding protein TYPA
ABU_RS11520	COG2391	methyltransferase activity
ABU_RS11525	COG0425	Belongs to the sulfur carrier protein TusA family
ABU_RS11560	COG3706	GGDEF domain
ABU_RS11600	COG0745	RESPONSE REGULATOR receiver
ABU_RS11605	COG2205	protein histidine kinase activity
ABU_RS11605	COG2770	Histidine kinase
ABU_RS11610	COG2226	methyltransferase
ABU_RS11620	COG0784	Response regulator, receiver
ABU_RS11620	COG3437	response regulator, receiver
ABU_RS11625	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
ABU_RS11630	COG2066	Belongs to the glutaminase family
ABU_RS11650	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
ABU_RS11670	COG1609	Transcriptional regulator
ABU_RS11670	COG2207	Transcriptional regulator