locus-tag class description ACRYD_RS00005 PF00308 Bacterial dnaA protein ACRYD_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix ACRYD_RS00005 PF11638 DnaA N-terminal domain ACRYD_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ACRYD_RS00010 PF02767 DNA polymerase III beta subunit, central domain ACRYD_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ACRYD_RS00015 PF00204 DNA gyrase B ACRYD_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus ACRYD_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS00015 PF01751 Toprim domain ACRYD_RS00020 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYD_RS00025 PF14489 QueF-like protein ACRYD_RS00050 PF13649 Methyltransferase domain ACRYD_RS00055 PF00005 ABC transporter ACRYD_RS00055 PF08402 TOBE domain ACRYD_RS00060 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_RS00075 PF03459 TOBE domain ACRYD_RS00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYD_RS00085 PF03466 LysR substrate binding domain ACRYD_RS00085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYD_RS00105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACRYD_RS00105 PF00529 HlyD membrane-fusion protein of T1SS ACRYD_RS00110 PF00873 AcrB/AcrD/AcrF family ACRYD_RS00115 PF02321 Outer membrane efflux protein ACRYD_RS00120 PF00672 HAMP domain ACRYD_RS00120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS00140 PF01053 Cys/Met metabolism PLP-dependent enzyme ACRYD_RS00145 PF02082 Transcriptional regulator ACRYD_RS00150 PF00291 Pyridoxal-phosphate dependent enzyme ACRYD_RS00160 PF01507 Phosphoadenosine phosphosulfate reductase family ACRYD_RS00165 PF01507 Phosphoadenosine phosphosulfate reductase family ACRYD_RS00170 PF00009 Elongation factor Tu GTP binding domain ACRYD_RS00180 PF07690 Major Facilitator Superfamily ACRYD_RS00185 PF00210 Ferritin-like domain ACRYD_RS00190 PF13419 Haloacid dehalogenase-like hydrolase ACRYD_RS00195 PF00205 Thiamine pyrophosphate enzyme, central domain ACRYD_RS00195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACRYD_RS00195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACRYD_RS00200 PF00171 Aldehyde dehydrogenase family ACRYD_RS00205 PF03167 Uracil DNA glycosylase superfamily ACRYD_RS00220 PF03883 Peroxide stress protein YaaA ACRYD_RS00225 PF01544 CorA-like Mg2+ transporter protein ACRYD_RS00240 PF00156 Phosphoribosyl transferase domain ACRYD_RS00245 PF01765 Ribosome recycling factor ACRYD_RS00250 PF03840 Preprotein translocase SecG subunit ACRYD_RS00260 PF17792 ThiD2 family ACRYD_RS00260 PF02581 Thiamine monophosphate synthase ACRYD_RS00265 PF01027 Inhibitor of apoptosis-promoting Bax1 ACRYD_RS00295 PF07650 KH domain ACRYD_RS00295 PF01926 50S ribosome-binding GTPase ACRYD_RS00315 PF00482 Type II secretion system (T2SS), protein F ACRYD_RS00320 PF01544 CorA-like Mg2+ transporter protein ACRYD_RS00325 PF01227 GTP cyclohydrolase I ACRYD_RS00330 PF08402 TOBE domain ACRYD_RS00330 PF00005 ABC transporter ACRYD_RS00335 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_RS00340 PF13416 Bacterial extracellular solute-binding protein ACRYD_RS00350 PF00117 Glutamine amidotransferase class-I ACRYD_RS00400 PF02677 Epoxyqueuosine reductase QueH ACRYD_RS00405 PF02684 Lipid-A-disaccharide synthetase ACRYD_RS00410 PF07977 FabA-like domain ACRYD_RS00415 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ACRYD_RS00415 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_RS00420 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYD_RS00420 PF06689 ClpX C4-type zinc finger ACRYD_RS00420 PF07724 AAA domain (Cdc48 subfamily) ACRYD_RS00435 PF00677 Lumazine binding domain ACRYD_RS00440 PF01134 Glucose inhibited division protein A ACRYD_RS00440 PF13932 GidA associated domain ACRYD_RS00445 PF01261 Xylose isomerase-like TIM barrel ACRYD_RS00450 PF00106 short chain dehydrogenase ACRYD_RS00455 PF00916 Sulfate permease family ACRYD_RS00455 PF01740 STAS domain ACRYD_RS00470 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_RS00470 PF16450 Proteasomal ATPase OB C-terminal domain ACRYD_RS00470 PF17758 Proteasomal ATPase OB N-terminal domain ACRYD_RS00480 PF02621 Menaquinone biosynthesis ACRYD_RS00485 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACRYD_RS00495 PF13368 Topoisomerase C-terminal repeat ACRYD_RS00495 PF01131 DNA topoisomerase ACRYD_RS00495 PF01751 Toprim domain ACRYD_RS00505 PF04055 Radical SAM superfamily ACRYD_RS00505 PF06968 Biotin and Thiamin Synthesis associated domain ACRYD_RS00510 PF00154 recA bacterial DNA recombination protein ACRYD_RS00570 PF01555 DNA methylase ACRYD_RS00585 PF02719 Polysaccharide biosynthesis protein ACRYD_RS00590 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_RS00595 PF02348 Cytidylyltransferase ACRYD_RS00605 PF08666 SAF domain ACRYD_RS00605 PF03102 NeuB family ACRYD_RS00625 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ACRYD_RS00635 PF13193 AMP-binding enzyme C-terminal domain ACRYD_RS00635 PF00501 AMP-binding enzyme ACRYD_RS00635 PF01553 Acyltransferase ACRYD_RS00640 PF01467 Cytidylyltransferase-like ACRYD_RS00660 PF00535 Glycosyl transferase family 2 ACRYD_RS00670 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACRYD_RS00670 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACRYD_RS00670 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACRYD_RS00695 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_RS00700 PF08889 WbqC-like protein family ACRYD_RS00725 PF13649 Methyltransferase domain ACRYD_RS00745 PF02719 Polysaccharide biosynthesis protein ACRYD_RS00750 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_RS00765 PF03102 NeuB family ACRYD_RS00765 PF08666 SAF domain ACRYD_RS00770 PF02350 UDP-N-acetylglucosamine 2-epimerase ACRYD_RS00775 PF00483 Nucleotidyl transferase ACRYD_RS00780 PF13472 GDSL-like Lipase/Acylhydrolase family ACRYD_RS00780 PF02348 Cytidylyltransferase ACRYD_RS00790 PF00483 Nucleotidyl transferase ACRYD_RS00795 PF16363 GDP-mannose 4,6 dehydratase ACRYD_RS00800 PF01370 NAD dependent epimerase/dehydratase family ACRYD_RS00815 PF07196 Flagellin hook IN motif ACRYD_RS00815 PF00700 Bacterial flagellin C-terminal helical region ACRYD_RS00815 PF00669 Bacterial flagellin N-terminal helical region ACRYD_RS00820 PF00669 Bacterial flagellin N-terminal helical region ACRYD_RS00820 PF00700 Bacterial flagellin C-terminal helical region ACRYD_RS00820 PF07196 Flagellin hook IN motif ACRYD_RS00835 PF05958 tRNA (Uracil-5-)-methyltransferase ACRYD_RS00850 PF00270 DEAD/DEAH box helicase ACRYD_RS00850 PF00271 Helicase conserved C-terminal domain ACRYD_RS00850 PF17191 RecG wedge domain ACRYD_RS00860 PF14602 Hexapeptide repeat of succinyl-transferase ACRYD_RS00860 PF12804 MobA-like NTP transferase domain ACRYD_RS00865 PF02441 Flavoprotein ACRYD_RS00865 PF04127 DNA / pantothenate metabolism flavoprotein ACRYD_RS00870 PF01255 Putative undecaprenyl diphosphate synthase ACRYD_RS00885 PF01416 tRNA pseudouridine synthase ACRYD_RS00895 PF01628 HrcA protein C terminal domain ACRYD_RS00900 PF01025 GrpE ACRYD_RS00905 PF00012 Hsp70 protein ACRYD_RS00925 PF04028 Domain of unknown function (DUF374) ACRYD_RS00930 PF04055 Radical SAM superfamily ACRYD_RS00930 PF01938 TRAM domain ACRYD_RS00930 PF00919 Uncharacterized protein family UPF0004 ACRYD_RS00940 PF08529 NusA N-terminal domain ACRYD_RS00940 PF13184 NusA-like KH domain ACRYD_RS00945 PF09190 DALR domain ACRYD_RS00945 PF01406 tRNA synthetases class I (C) catalytic domain ACRYD_RS00950 PF03960 ArsC family ACRYD_RS00955 PF02686 Glu-tRNAGln amidotransferase C subunit ACRYD_RS00960 PF01702 Queuine tRNA-ribosyltransferase ACRYD_RS00975 PF02875 Mur ligase family, glutamate ligase domain ACRYD_RS00975 PF01225 Mur ligase family, catalytic domain ACRYD_RS00975 PF08245 Mur ligase middle domain ACRYD_RS00990 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACRYD_RS00990 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACRYD_RS00995 PF00773 RNB domain ACRYD_RS01005 PF06144 DNA polymerase III, delta subunit ACRYD_RS01010 PF01250 Ribosomal protein S6 ACRYD_RS01015 PF00436 Single-strand binding protein family ACRYD_RS01020 PF01084 Ribosomal protein S18 ACRYD_RS01025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACRYD_RS01030 PF00472 RF-1 domain ACRYD_RS01030 PF03462 PCRF domain ACRYD_RS01045 PF02660 Glycerol-3-phosphate acyltransferase ACRYD_RS01050 PF02445 Quinolinate synthetase A protein ACRYD_RS01055 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACRYD_RS01055 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACRYD_RS01070 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ACRYD_RS01080 PF00288 GHMP kinases N terminal domain ACRYD_RS01080 PF08544 GHMP kinases C terminal ACRYD_RS01090 PF00009 Elongation factor Tu GTP binding domain ACRYD_RS01090 PF04760 Translation initiation factor IF-2, N-terminal region ACRYD_RS01090 PF11987 Translation-initiation factor 2 ACRYD_RS01095 PF02033 Ribosome-binding factor A ACRYD_RS01100 PF02576 RimP N-terminal domain ACRYD_RS01105 PF01872 RibD C-terminal domain ACRYD_RS01105 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACRYD_RS01110 PF08207 Elongation factor P (EF-P) KOW-like domain ACRYD_RS01110 PF01132 Elongation factor P (EF-P) OB domain ACRYD_RS01110 PF09285 Elongation factor P, C-terminal ACRYD_RS01115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACRYD_RS01115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACRYD_RS01115 PF01842 ACT domain ACRYD_RS01120 PF00575 S1 RNA binding domain ACRYD_RS01125 PF02401 LytB protein ACRYD_RS01130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACRYD_RS01135 PF03484 tRNA synthetase B5 domain ACRYD_RS01135 PF03147 Ferredoxin-fold anticodon binding domain ACRYD_RS01135 PF01588 Putative tRNA binding domain ACRYD_RS01135 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACRYD_RS01140 PF01409 tRNA synthetases class II core domain (F) ACRYD_RS01140 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACRYD_RS01145 PF01230 HIT domain ACRYD_RS01150 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACRYD_RS01155 PF02801 Beta-ketoacyl synthase, C-terminal domain ACRYD_RS01155 PF00109 Beta-ketoacyl synthase, N-terminal domain ACRYD_RS01160 PF00550 Phosphopantetheine attachment site ACRYD_RS01180 PF06508 Queuosine biosynthesis protein QueC ACRYD_RS01200 PF00032 Cytochrome b(C-terminal)/b6/petD ACRYD_RS01200 PF00033 Cytochrome b/b6/petB ACRYD_RS01210 PF00291 Pyridoxal-phosphate dependent enzyme ACRYD_RS01215 PF00696 Amino acid kinase family ACRYD_RS01220 PF00580 UvrD/REP helicase N-terminal domain ACRYD_RS01220 PF13361 UvrD-like helicase C-terminal domain ACRYD_RS01230 PF00119 ATP synthase A chain ACRYD_RS01235 PF13291 ACT domain ACRYD_RS01235 PF00291 Pyridoxal-phosphate dependent enzyme ACRYD_RS01240 PF01116 Fructose-bisphosphate aldolase class-II ACRYD_RS01250 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS01250 PF00072 Response regulator receiver domain ACRYD_RS01255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS01255 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS01260 PF16916 Dimerisation domain of Zinc Transporter ACRYD_RS01260 PF01545 Cation efflux family ACRYD_RS01280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACRYD_RS01280 PF02403 Seryl-tRNA synthetase N-terminal domain ACRYD_RS01290 PF08495 FIST N domain ACRYD_RS01290 PF10442 FIST C domain ACRYD_RS01290 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS01290 PF00563 EAL domain ACRYD_RS01310 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ACRYD_RS01315 PF12801 4Fe-4S binding domain ACRYD_RS01315 PF13237 4Fe-4S dicluster domain ACRYD_RS01320 PF12838 4Fe-4S dicluster domain ACRYD_RS01320 PF12800 4Fe-4S binding domain ACRYD_RS01325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACRYD_RS01325 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACRYD_RS01325 PF00384 Molybdopterin oxidoreductase ACRYD_RS01325 PF01568 Molydopterin dinucleotide binding domain ACRYD_RS01340 PF00591 Glycosyl transferase family, a/b domain ACRYD_RS01340 PF02885 Glycosyl transferase family, helical bundle domain ACRYD_RS01345 PF06463 Molybdenum Cofactor Synthesis C ACRYD_RS01345 PF04055 Radical SAM superfamily ACRYD_RS01350 PF00312 Ribosomal protein S15 ACRYD_RS01370 PF02203 Tar ligand binding domain homologue ACRYD_RS01370 PF00672 HAMP domain ACRYD_RS01370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS01395 PF01575 MaoC like domain ACRYD_RS01400 PF13193 AMP-binding enzyme C-terminal domain ACRYD_RS01400 PF00501 AMP-binding enzyme ACRYD_RS01420 PF02617 ATP-dependent Clp protease adaptor protein ClpS ACRYD_RS01425 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYD_RS01425 PF17871 AAA lid domain ACRYD_RS01425 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_RS01425 PF02861 Clp amino terminal domain, pathogenicity island component ACRYD_RS01425 PF07724 AAA domain (Cdc48 subfamily) ACRYD_RS01465 PF03952 Enolase, N-terminal domain ACRYD_RS01465 PF00113 Enolase, C-terminal TIM barrel domain ACRYD_RS01480 PF07690 Major Facilitator Superfamily ACRYD_RS01490 PF00164 Ribosomal protein S12/S23 ACRYD_RS01495 PF00177 Ribosomal protein S7p/S5e ACRYD_RS01500 PF00679 Elongation factor G C-terminus ACRYD_RS01500 PF03764 Elongation factor G, domain IV ACRYD_RS01500 PF14492 Elongation Factor G, domain II ACRYD_RS01500 PF03144 Elongation factor Tu domain 2 ACRYD_RS01500 PF00009 Elongation factor Tu GTP binding domain ACRYD_RS01505 PF01513 ATP-NAD kinase ACRYD_RS01510 PF13476 AAA domain ACRYD_RS01515 PF00672 HAMP domain ACRYD_RS01515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS01515 PF17200 Single Cache domain 2 ACRYD_RS01520 PF01136 Peptidase family U32 ACRYD_RS01530 PF00731 AIR carboxylase ACRYD_RS01540 PF02091 Glycyl-tRNA synthetase alpha subunit ACRYD_RS01545 PF01784 NIF3 (NGG1p interacting factor 3) ACRYD_RS01555 PF02390 Putative methyltransferase ACRYD_RS01555 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ACRYD_RS01560 PF00849 RNA pseudouridylate synthase ACRYD_RS01565 PF02881 SRP54-type protein, helical bundle domain ACRYD_RS01565 PF00448 SRP54-type protein, GTPase domain ACRYD_RS01565 PF02978 Signal peptide binding domain ACRYD_RS01570 PF00886 Ribosomal protein S16 ACRYD_RS01580 PF01782 RimM N-terminal domain ACRYD_RS01595 PF00460 Flagella basal body rod protein ACRYD_RS01595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYD_RS01600 PF00072 Response regulator receiver domain ACRYD_RS01610 PF00460 Flagella basal body rod protein ACRYD_RS01610 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYD_RS01615 PF00460 Flagella basal body rod protein ACRYD_RS01620 PF08345 Flagellar M-ring protein C-terminal ACRYD_RS01620 PF01514 Secretory protein of YscJ/FliF family ACRYD_RS01625 PF14842 FliG N-terminal domain ACRYD_RS01625 PF14841 FliG middle domain ACRYD_RS01625 PF01706 FliG C-terminal domain ACRYD_RS01635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACRYD_RS01645 PF07559 Flagellar basal body protein FlaE ACRYD_RS01645 PF07196 Flagellin hook IN motif ACRYD_RS01645 PF00460 Flagella basal body rod protein ACRYD_RS01645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYD_RS01650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYD_RS01650 PF00460 Flagella basal body rod protein ACRYD_RS01650 PF07196 Flagellin hook IN motif ACRYD_RS01650 PF07559 Flagellar basal body protein FlaE ACRYD_RS01670 PF16973 Flagellar motor switch protein FliN N-terminal ACRYD_RS01670 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACRYD_RS01690 PF00448 SRP54-type protein, GTPase domain ACRYD_RS01695 PF10609 NUBPL iron-transfer P-loop NTPase ACRYD_RS01705 PF02049 Flagellar hook-basal body complex protein FliE ACRYD_RS01710 PF00460 Flagella basal body rod protein ACRYD_RS01710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYD_RS01725 PF01312 FlhB HrpN YscU SpaS Family ACRYD_RS01735 PF18269 T3SS EscN ATPase C-terminal domain ACRYD_RS01735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYD_RS01745 PF00771 FHIPEP family ACRYD_RS01755 PF01613 Flavin reductase like domain ACRYD_RS01765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS01765 PF00672 HAMP domain ACRYD_RS01765 PF02203 Tar ligand binding domain homologue ACRYD_RS01770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS01770 PF02203 Tar ligand binding domain homologue ACRYD_RS01770 PF00672 HAMP domain ACRYD_RS01775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS01775 PF08447 PAS fold ACRYD_RS01780 PF02203 Tar ligand binding domain homologue ACRYD_RS01780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS01780 PF00672 HAMP domain ACRYD_RS01790 PF03707 Bacterial signalling protein N terminal repeat ACRYD_RS01790 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS01790 PF00563 EAL domain ACRYD_RS01795 PF01717 Cobalamin-independent synthase, Catalytic domain ACRYD_RS01795 PF08267 Cobalamin-independent synthase, N-terminal domain ACRYD_RS01805 PF01746 tRNA (Guanine-1)-methyltransferase ACRYD_RS01810 PF01245 Ribosomal protein L19 ACRYD_RS01815 PF09335 SNARE associated Golgi protein ACRYD_RS01820 PF00155 Aminotransferase class I and II ACRYD_RS01825 PF12833 Helix-turn-helix domain ACRYD_RS01835 PF01042 Endoribonuclease L-PSP ACRYD_RS01840 PF12821 Threonine/Serine exporter, ThrE ACRYD_RS01840 PF06738 Putative threonine/serine exporter ACRYD_RS01845 PF06738 Putative threonine/serine exporter ACRYD_RS01860 PF01618 MotA/TolQ/ExbB proton channel family ACRYD_RS01865 PF02472 Biopolymer transport protein ExbD/TolR ACRYD_RS01870 PF00171 Aldehyde dehydrogenase family ACRYD_RS01875 PF02659 Putative manganese efflux pump ACRYD_RS01880 PF00579 tRNA synthetases class I (W and Y) ACRYD_RS01890 PF01594 AI-2E family transporter ACRYD_RS01900 PF01634 ATP phosphoribosyltransferase ACRYD_RS01905 PF03309 Type III pantothenate kinase ACRYD_RS01920 PF05538 Campylobacter major outer membrane protein ACRYD_RS01925 PF01202 Shikimate kinase ACRYD_RS01930 PF00815 Histidinol dehydrogenase ACRYD_RS01940 PF00348 Polyprenyl synthetase ACRYD_RS01945 PF01488 Shikimate / quinate 5-dehydrogenase ACRYD_RS01945 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ACRYD_RS01945 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ACRYD_RS01950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACRYD_RS01950 PF04073 Aminoacyl-tRNA editing domain ACRYD_RS01950 PF03129 Anticodon binding domain ACRYD_RS01955 PF00924 Mechanosensitive ion channel ACRYD_RS01955 PF05552 Conserved TM helix ACRYD_RS01960 PF01966 HD domain ACRYD_RS01960 PF12627 Probable RNA and SrmB- binding site of polymerase A ACRYD_RS01960 PF01743 Poly A polymerase head domain ACRYD_RS01970 PF02699 Preprotein translocase subunit ACRYD_RS01975 PF02355 Protein export membrane protein ACRYD_RS01980 PF02355 Protein export membrane protein ACRYD_RS01980 PF07549 SecD/SecF GG Motif ACRYD_RS01990 PF13677 Membrane MotB of proton-channel complex MotA/MotB ACRYD_RS01990 PF00691 OmpA family ACRYD_RS01995 PF01618 MotA/TolQ/ExbB proton channel family ACRYD_RS02005 PF00133 tRNA synthetases class I (I, L, M and V) ACRYD_RS02005 PF13603 Leucyl-tRNA synthetase, Domain 2 ACRYD_RS02005 PF09334 tRNA synthetases class I (M) ACRYD_RS02015 PF08245 Mur ligase middle domain ACRYD_RS02040 PF00271 Helicase conserved C-terminal domain ACRYD_RS02040 PF00270 DEAD/DEAH box helicase ACRYD_RS02040 PF02559 CarD-like/TRCF domain ACRYD_RS02040 PF17757 UvrB interaction domain ACRYD_RS02040 PF03461 TRCF domain ACRYD_RS02050 PF13302 Acetyltransferase (GNAT) domain ACRYD_RS02060 PF01817 Chorismate mutase type II ACRYD_RS02060 PF00800 Prephenate dehydratase ACRYD_RS02080 PF01381 Helix-turn-helix ACRYD_RS02100 PF00905 Penicillin binding protein transpeptidase domain ACRYD_RS02100 PF00912 Transglycosylase ACRYD_RS02105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACRYD_RS02105 PF00005 ABC transporter ACRYD_RS02110 PF01676 Metalloenzyme superfamily ACRYD_RS02110 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACRYD_RS02115 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ACRYD_RS02115 PF00953 Glycosyl transferase family 4 ACRYD_RS02120 PF08245 Mur ligase middle domain ACRYD_RS02145 PF03144 Elongation factor Tu domain 2 ACRYD_RS02145 PF00009 Elongation factor Tu GTP binding domain ACRYD_RS02145 PF03143 Elongation factor Tu C-terminal domain ACRYD_RS02150 PF00471 Ribosomal protein L33 ACRYD_RS02165 PF02357 Transcription termination factor nusG ACRYD_RS02170 PF03946 Ribosomal protein L11, N-terminal domain ACRYD_RS02170 PF00298 Ribosomal protein L11, RNA binding domain ACRYD_RS02175 PF00687 Ribosomal protein L1p/L10e family ACRYD_RS02180 PF00466 Ribosomal protein L10 ACRYD_RS02185 PF00542 Ribosomal protein L7/L12 C-terminal domain ACRYD_RS02185 PF16320 Ribosomal protein L7/L12 dimerisation domain ACRYD_RS02190 PF04561 RNA polymerase Rpb2, domain 2 ACRYD_RS02190 PF04563 RNA polymerase beta subunit ACRYD_RS02190 PF04565 RNA polymerase Rpb2, domain 3 ACRYD_RS02190 PF10385 RNA polymerase beta subunit external 1 domain ACRYD_RS02190 PF00562 RNA polymerase Rpb2, domain 6 ACRYD_RS02190 PF04560 RNA polymerase Rpb2, domain 7 ACRYD_RS02195 PF04997 RNA polymerase Rpb1, domain 1 ACRYD_RS02195 PF04983 RNA polymerase Rpb1, domain 3 ACRYD_RS02195 PF05000 RNA polymerase Rpb1, domain 4 ACRYD_RS02195 PF04998 RNA polymerase Rpb1, domain 5 ACRYD_RS02195 PF00623 RNA polymerase Rpb1, domain 2 ACRYD_RS02215 PF00255 Glutathione peroxidase ACRYD_RS02220 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ACRYD_RS02220 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACRYD_RS02220 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACRYD_RS02225 PF00374 Nickel-dependent hydrogenase ACRYD_RS02230 PF01292 Prokaryotic cytochrome b561 ACRYD_RS02235 PF01750 Hydrogenase maturation protease ACRYD_RS02245 PF01300 Telomere recombination ACRYD_RS02245 PF17788 HypF Kae1-like domain ACRYD_RS02245 PF00708 Acylphosphatase ACRYD_RS02245 PF07503 HypF finger ACRYD_RS02260 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACRYD_RS02265 PF01455 HupF/HypC family ACRYD_RS02270 PF01924 Hydrogenase formation hypA family ACRYD_RS02275 PF17761 DUF1016 N-terminal domain ACRYD_RS02275 PF06250 YhcG PDDEXK nuclease domain ACRYD_RS02285 PF00586 AIR synthase related protein, N-terminal domain ACRYD_RS02285 PF02769 AIR synthase related protein, C-terminal domain ACRYD_RS02290 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ACRYD_RS02300 PF01891 Cobalt uptake substrate-specific transmembrane region ACRYD_RS02300 PF13190 PDGLE domain ACRYD_RS02315 PF00005 ABC transporter ACRYD_RS02320 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS02320 PF00072 Response regulator receiver domain ACRYD_RS02335 PF00069 Protein kinase domain ACRYD_RS02335 PF03793 PASTA domain ACRYD_RS02345 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS02345 PF00563 EAL domain ACRYD_RS02345 PF03707 Bacterial signalling protein N terminal repeat ACRYD_RS02355 PF00793 DAHP synthetase I family ACRYD_RS02365 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACRYD_RS02375 PF03631 Virulence factor BrkB ACRYD_RS02380 PF01565 FAD binding domain ACRYD_RS02380 PF02913 FAD linked oxidases, C-terminal domain ACRYD_RS02390 PF00578 AhpC/TSA family ACRYD_RS02395 PF13649 Methyltransferase domain ACRYD_RS02400 PF06574 FAD synthetase ACRYD_RS02400 PF01687 Riboflavin kinase ACRYD_RS02405 PF01728 FtsJ-like methyltransferase ACRYD_RS02405 PF01479 S4 domain ACRYD_RS02415 PF01205 Uncharacterized protein family UPF0029 ACRYD_RS02415 PF09186 Domain of unknown function (DUF1949) ACRYD_RS02435 PF00459 Inositol monophosphatase family ACRYD_RS02440 PF00037 4Fe-4S binding domain ACRYD_RS02450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACRYD_RS02470 PF00483 Nucleotidyl transferase ACRYD_RS02475 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACRYD_RS02480 PF04321 RmlD substrate binding domain ACRYD_RS02485 PF16363 GDP-mannose 4,6 dehydratase ACRYD_RS02505 PF03062 MBOAT, membrane-bound O-acyltransferase family ACRYD_RS02515 PF03062 MBOAT, membrane-bound O-acyltransferase family ACRYD_RS02535 PF13439 Glycosyltransferase Family 4 ACRYD_RS02535 PF00534 Glycosyl transferases group 1 ACRYD_RS02550 PF00535 Glycosyl transferase family 2 ACRYD_RS02555 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACRYD_RS02570 PF13580 SIS domain ACRYD_RS02575 PF01467 Cytidylyltransferase-like ACRYD_RS02575 PF00294 pfkB family carbohydrate kinase ACRYD_RS02580 PF01370 NAD dependent epimerase/dehydratase family ACRYD_RS02595 PF00830 Ribosomal L28 family ACRYD_RS02605 PF01960 ArgJ family ACRYD_RS02615 PF03989 DNA gyrase C-terminal domain, beta-propeller ACRYD_RS02615 PF00521 DNA gyrase/topoisomerase IV, subunit A ACRYD_RS02620 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACRYD_RS02620 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACRYD_RS02630 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACRYD_RS02680 PF00005 ABC transporter ACRYD_RS02695 PF04264 YceI-like domain ACRYD_RS02705 PF00149 Calcineurin-like phosphoesterase ACRYD_RS02710 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS02710 PF00072 Response regulator receiver domain ACRYD_RS02715 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS02715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS02715 PF00672 HAMP domain ACRYD_RS02720 PF00005 ABC transporter ACRYD_RS02725 PF00950 ABC 3 transport family ACRYD_RS02730 PF13509 S1 domain ACRYD_RS02730 PF17783 CvfB-like winged helix domain ACRYD_RS02735 PF08534 Redoxin ACRYD_RS02755 PF08264 Anticodon-binding domain of tRNA ACRYD_RS02755 PF10458 Valyl tRNA synthetase tRNA binding arm ACRYD_RS02755 PF00133 tRNA synthetases class I (I, L, M and V) ACRYD_RS02765 PF08447 PAS fold ACRYD_RS02765 PF13426 PAS domain ACRYD_RS02765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS02775 PF07690 Major Facilitator Superfamily ACRYD_RS02780 PF01725 Ham1 family ACRYD_RS02800 PF14748 Pyrroline-5-carboxylate reductase dimerisation ACRYD_RS02800 PF03807 NADP oxidoreductase coenzyme F420-dependent ACRYD_RS02810 PF13525 Outer membrane lipoprotein ACRYD_RS02815 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACRYD_RS02815 PF05362 Lon protease (S16) C-terminal proteolytic domain ACRYD_RS02815 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_RS02825 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACRYD_RS02845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACRYD_RS02845 PF00289 Biotin carboxylase, N-terminal domain ACRYD_RS02845 PF02785 Biotin carboxylase C-terminal domain ACRYD_RS02855 PF02657 Fe-S metabolism associated domain ACRYD_RS02860 PF00266 Aminotransferase class-V ACRYD_RS02870 PF00005 ABC transporter ACRYD_RS02875 PF01458 Uncharacterized protein family (UPF0051) ACRYD_RS02880 PF01592 NifU-like N terminal domain ACRYD_RS02880 PF04324 BFD-like [2Fe-2S] binding domain ACRYD_RS02880 PF01106 NifU-like domain ACRYD_RS02890 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS02890 PF07694 5TMR of 5TMR-LYT ACRYD_RS02895 PF14698 Argininosuccinate lyase C-terminal ACRYD_RS02895 PF00206 Lyase ACRYD_RS02900 PF04851 Type III restriction enzyme, res subunit ACRYD_RS02900 PF17757 UvrB interaction domain ACRYD_RS02900 PF02151 UvrB/uvrC motif ACRYD_RS02900 PF12344 Ultra-violet resistance protein B ACRYD_RS02900 PF00271 Helicase conserved C-terminal domain ACRYD_RS02910 PF01272 Transcription elongation factor, GreA/GreB, C-term ACRYD_RS02910 PF03449 Transcription elongation factor, N-terminal ACRYD_RS02915 PF00899 ThiF family ACRYD_RS02920 PF00072 Response regulator receiver domain ACRYD_RS02920 PF01584 CheW-like domain ACRYD_RS02935 PF00730 HhH-GPD superfamily base excision DNA repair protein ACRYD_RS02935 PF00633 Helix-hairpin-helix motif ACRYD_RS02935 PF10576 Iron-sulfur binding domain of endonuclease III ACRYD_RS02940 PF00586 AIR synthase related protein, N-terminal domain ACRYD_RS02940 PF02769 AIR synthase related protein, C-terminal domain ACRYD_RS02945 PF01142 tRNA pseudouridine synthase D (TruD) ACRYD_RS02955 PF00672 HAMP domain ACRYD_RS02955 PF02203 Tar ligand binding domain homologue ACRYD_RS02955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS02960 PF07499 RuvA, C-terminal domain ACRYD_RS02960 PF01330 RuvA N terminal domain ACRYD_RS02965 PF01820 D-ala D-ala ligase N-terminus ACRYD_RS02965 PF07478 D-ala D-ala ligase C-terminus ACRYD_RS02975 PF02875 Mur ligase family, glutamate ligase domain ACRYD_RS02975 PF08245 Mur ligase middle domain ACRYD_RS03050 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ ACRYD_RS03070 PF13195 Protein of unknown function (DUF4011) ACRYD_RS03070 PF13087 AAA domain ACRYD_RS03070 PF13086 AAA domain ACRYD_RS03090 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACRYD_RS03095 PF01029 NusB family ACRYD_RS03100 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACRYD_RS03105 PF03951 Glutamine synthetase, beta-Grasp domain ACRYD_RS03105 PF00120 Glutamine synthetase, catalytic domain ACRYD_RS03115 PF02391 MoaE protein ACRYD_RS03125 PF02621 Menaquinone biosynthesis ACRYD_RS03130 PF02673 Bacitracin resistance protein BacA ACRYD_RS03135 PF04101 Glycosyltransferase family 28 C-terminal domain ACRYD_RS03135 PF03033 Glycosyltransferase family 28 N-terminal domain ACRYD_RS03140 PF01098 Cell cycle protein ACRYD_RS03145 PF03717 Penicillin-binding Protein dimerisation domain ACRYD_RS03145 PF00905 Penicillin binding protein transpeptidase domain ACRYD_RS03145 PF03793 PASTA domain ACRYD_RS03150 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACRYD_RS03155 PF03150 Di-haem cytochrome c peroxidase ACRYD_RS03160 PF04116 Fatty acid hydroxylase superfamily ACRYD_RS03185 PF00137 ATP synthase subunit C ACRYD_RS03200 PF00005 ABC transporter ACRYD_RS03205 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_RS03210 PF03480 Bacterial extracellular solute-binding protein, family 7 ACRYD_RS03215 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ACRYD_RS03220 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ACRYD_RS03225 PF08447 PAS fold ACRYD_RS03225 PF08448 PAS fold ACRYD_RS03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS03230 PF00072 Response regulator receiver domain ACRYD_RS03240 PF00563 EAL domain ACRYD_RS03240 PF01590 GAF domain ACRYD_RS03240 PF00360 Phytochrome region ACRYD_RS03240 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS03250 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS03250 PF00072 Response regulator receiver domain ACRYD_RS03265 PF02203 Tar ligand binding domain homologue ACRYD_RS03265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS03265 PF00672 HAMP domain ACRYD_RS03270 PF00072 Response regulator receiver domain ACRYD_RS03270 PF00158 Sigma-54 interaction domain ACRYD_RS03270 PF02954 Bacterial regulatory protein, Fis family ACRYD_RS03275 PF13426 PAS domain ACRYD_RS03275 PF13581 Histidine kinase-like ATPase domain ACRYD_RS03275 PF07536 HWE histidine kinase ACRYD_RS03280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS03280 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS03280 PF00989 PAS fold ACRYD_RS03280 PF13188 PAS domain ACRYD_RS03280 PF13426 PAS domain ACRYD_RS03285 PF13277 YmdB-like protein ACRYD_RS03300 PF01209 ubiE/COQ5 methyltransferase family ACRYD_RS03305 PF02601 Exonuclease VII, large subunit ACRYD_RS03305 PF13742 OB-fold nucleic acid binding domain ACRYD_RS03310 PF01584 CheW-like domain ACRYD_RS03315 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACRYD_RS03320 PF02261 Aspartate decarboxylase ACRYD_RS03325 PF02575 YbaB/EbfC DNA-binding family ACRYD_RS03330 PF00348 Polyprenyl synthetase ACRYD_RS03335 PF00166 Chaperonin 10 Kd subunit ACRYD_RS03340 PF00118 TCP-1/cpn60 chaperonin family ACRYD_RS03345 PF07943 Penicillin-binding protein 5, C-terminal domain ACRYD_RS03345 PF00768 D-alanyl-D-alanine carboxypeptidase ACRYD_RS03350 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS03360 PF02472 Biopolymer transport protein ExbD/TolR ACRYD_RS03365 PF01618 MotA/TolQ/ExbB proton channel family ACRYD_RS03380 PF12704 MacB-like periplasmic core domain ACRYD_RS03380 PF02687 FtsX-like permease family ACRYD_RS03380 PF00005 ABC transporter ACRYD_RS03385 PF02687 FtsX-like permease family ACRYD_RS03385 PF12704 MacB-like periplasmic core domain ACRYD_RS03385 PF00005 ABC transporter ACRYD_RS03390 PF01351 Ribonuclease HII ACRYD_RS03395 PF02861 Clp amino terminal domain, pathogenicity island component ACRYD_RS03395 PF17871 AAA lid domain ACRYD_RS03395 PF07724 AAA domain (Cdc48 subfamily) ACRYD_RS03395 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_RS03395 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYD_RS03400 PF00468 Ribosomal protein L34 ACRYD_RS03405 PF00825 Ribonuclease P ACRYD_RS03410 PF01809 Putative membrane protein insertion efficiency factor ACRYD_RS03415 PF14849 YidC periplasmic domain ACRYD_RS03415 PF02096 60Kd inner membrane protein ACRYD_RS03425 PF01926 50S ribosome-binding GTPase ACRYD_RS03425 PF10396 GTP-binding protein TrmE N-terminus ACRYD_RS03425 PF12631 MnmE helical domain ACRYD_RS03435 PF00300 Histidine phosphatase superfamily (branch 1) ACRYD_RS03445 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS03445 PF17158 Membrane-associated sensor, integral membrane domain ACRYD_RS03455 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ACRYD_RS03460 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ACRYD_RS03465 PF04715 Anthranilate synthase component I, N terminal region ACRYD_RS03465 PF00425 chorismate binding enzyme ACRYD_RS03475 PF00464 Serine hydroxymethyltransferase ACRYD_RS03480 PF01336 OB-fold nucleic acid binding domain ACRYD_RS03480 PF00152 tRNA synthetases class II (D, K and N) ACRYD_RS03490 PF08448 PAS fold ACRYD_RS03490 PF08447 PAS fold ACRYD_RS03490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS03495 PF04551 GcpE protein ACRYD_RS03500 PF03796 DnaB-like helicase C terminal domain ACRYD_RS03500 PF00772 DnaB-like helicase N terminal domain ACRYD_RS03505 PF07963 Prokaryotic N-terminal methylation motif ACRYD_RS03505 PF08334 Type II secretion system (T2SS), protein G ACRYD_RS03510 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_RS03515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACRYD_RS03515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACRYD_RS03520 PF07715 TonB-dependent Receptor Plug Domain ACRYD_RS03520 PF00593 TonB dependent receptor ACRYD_RS03540 PF13722 5TM C-terminal transporter carbon starvation CstA ACRYD_RS03540 PF02554 Carbon starvation protein CstA ACRYD_RS03545 PF05191 Adenylate kinase, active site lid ACRYD_RS03560 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS03560 PF17158 Membrane-associated sensor, integral membrane domain ACRYD_RS03565 PF00155 Aminotransferase class I and II ACRYD_RS03570 PF00465 Iron-containing alcohol dehydrogenase ACRYD_RS03575 PF02203 Tar ligand binding domain homologue ACRYD_RS03575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS03575 PF00672 HAMP domain ACRYD_RS03580 PF00842 Alanine racemase, C-terminal domain ACRYD_RS03580 PF01168 Alanine racemase, N-terminal domain ACRYD_RS03585 PF02151 UvrB/uvrC motif ACRYD_RS03585 PF08459 UvrC Helix-hairpin-helix N-terminal ACRYD_RS03585 PF01541 GIY-YIG catalytic domain ACRYD_RS03590 PF02203 Tar ligand binding domain homologue ACRYD_RS03590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS03590 PF00672 HAMP domain ACRYD_RS03595 PF00873 AcrB/AcrD/AcrF family ACRYD_RS03600 PF00529 HlyD membrane-fusion protein of T1SS ACRYD_RS03600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACRYD_RS03615 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS03615 PF00072 Response regulator receiver domain ACRYD_RS03620 PF08447 PAS fold ACRYD_RS03620 PF08448 PAS fold ACRYD_RS03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS03625 PF08534 Redoxin ACRYD_RS03625 PF01625 Peptide methionine sulfoxide reductase ACRYD_RS03625 PF01641 SelR domain ACRYD_RS03630 PF00873 AcrB/AcrD/AcrF family ACRYD_RS03635 PF00873 AcrB/AcrD/AcrF family ACRYD_RS03640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACRYD_RS03650 PF11849 Domain of unknown function (DUF3369) ACRYD_RS03655 PF00813 FliP family ACRYD_RS03660 PF00905 Penicillin binding protein transpeptidase domain ACRYD_RS03660 PF03717 Penicillin-binding Protein dimerisation domain ACRYD_RS03680 PF00005 ABC transporter ACRYD_RS03685 PF02390 Putative methyltransferase ACRYD_RS03695 PF01479 S4 domain ACRYD_RS03695 PF00849 RNA pseudouridylate synthase ACRYD_RS03700 PF01098 Cell cycle protein ACRYD_RS03710 PF00202 Aminotransferase class-III ACRYD_RS03715 PF06865 Pyrimidine/purine nucleoside phosphorylase ACRYD_RS03735 PF16123 Hydroxyacylglutathione hydrolase C-terminus ACRYD_RS03735 PF00753 Metallo-beta-lactamase superfamily ACRYD_RS03795 PF00174 Oxidoreductase molybdopterin binding domain ACRYD_RS03800 PF02254 TrkA-N domain ACRYD_RS03800 PF02080 TrkA-C domain ACRYD_RS03800 PF00999 Sodium/hydrogen exchanger family ACRYD_RS03805 PF00580 UvrD/REP helicase N-terminal domain ACRYD_RS03805 PF13361 UvrD-like helicase C-terminal domain ACRYD_RS03810 PF00586 AIR synthase related protein, N-terminal domain ACRYD_RS03810 PF02769 AIR synthase related protein, C-terminal domain ACRYD_RS03815 PF01841 Transglutaminase-like superfamily ACRYD_RS03835 PF00072 Response regulator receiver domain ACRYD_RS03835 PF00158 Sigma-54 interaction domain ACRYD_RS03840 PF08447 PAS fold ACRYD_RS03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS03840 PF08448 PAS fold ACRYD_RS03865 PF01568 Molydopterin dinucleotide binding domain ACRYD_RS03865 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACRYD_RS03865 PF12838 4Fe-4S dicluster domain ACRYD_RS03865 PF00384 Molybdopterin oxidoreductase ACRYD_RS03865 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACRYD_RS03870 PF01568 Molydopterin dinucleotide binding domain ACRYD_RS03870 PF00384 Molybdopterin oxidoreductase ACRYD_RS03870 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACRYD_RS03875 PF13247 4Fe-4S dicluster domain ACRYD_RS03885 PF02634 FdhD/NarQ family ACRYD_RS03905 PF00994 Probable molybdopterin binding domain ACRYD_RS03905 PF03454 MoeA C-terminal region (domain IV) ACRYD_RS03905 PF03453 MoeA N-terminal region (domain I and II) ACRYD_RS03910 PF12849 PBP superfamily domain ACRYD_RS03915 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_RS03920 PF00005 ABC transporter ACRYD_RS03935 PF12823 Domain of unknown function (DUF3817) ACRYD_RS03945 PF05661 Protein of unknown function (DUF808) ACRYD_RS03950 PF01522 Polysaccharide deacetylase ACRYD_RS03960 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ACRYD_RS03960 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ACRYD_RS03985 PF00271 Helicase conserved C-terminal domain ACRYD_RS03985 PF17764 3′ DNA-binding domain (3′BD) ACRYD_RS03985 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACRYD_RS03985 PF00270 DEAD/DEAH box helicase ACRYD_RS03985 PF18074 Primosomal protein N C-terminal domain ACRYD_RS03990 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ACRYD_RS03990 PF14602 Hexapeptide repeat of succinyl-transferase ACRYD_RS03995 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ACRYD_RS03995 PF18381 YcaO cyclodehydratase C-terminal domain ACRYD_RS04000 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACRYD_RS04000 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACRYD_RS04000 PF12833 Helix-turn-helix domain ACRYD_RS04000 PF02805 Metal binding domain of Ada ACRYD_RS04005 PF00464 Serine hydroxymethyltransferase ACRYD_RS04020 PF03471 Transporter associated domain ACRYD_RS04020 PF00571 CBS domain ACRYD_RS04025 PF01594 AI-2E family transporter ACRYD_RS04050 PF01594 AI-2E family transporter ACRYD_RS04055 PF05491 RuvB C-terminal winged helix domain ACRYD_RS04055 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACRYD_RS04055 PF17864 RuvB AAA lid domain ACRYD_RS04060 PF02548 Ketopantoate hydroxymethyltransferase ACRYD_RS04065 PF00290 Tryptophan synthase alpha chain ACRYD_RS04070 PF04377 Arginine-tRNA-protein transferase, C terminus ACRYD_RS04070 PF04376 Arginine-tRNA-protein transferase, N terminus ACRYD_RS04080 PF07664 Ferrous iron transport protein B C terminus ACRYD_RS04080 PF02421 Ferrous iron transport protein B ACRYD_RS04080 PF07670 Nucleoside recognition ACRYD_RS04090 PF01475 Ferric uptake regulator family ACRYD_RS04095 PF00764 Arginosuccinate synthase ACRYD_RS04100 PF12911 N-terminal TM domain of oligopeptide transport permease C ACRYD_RS04100 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_RS04110 PF00013 KH domain ACRYD_RS04110 PF01966 HD domain ACRYD_RS04110 PF12072 Domain of unknown function (DUF3552) ACRYD_RS04115 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACRYD_RS04125 PF00448 SRP54-type protein, GTPase domain ACRYD_RS04145 PF01638 HxlR-like helix-turn-helix ACRYD_RS04150 PF02525 Flavodoxin-like fold ACRYD_RS04155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACRYD_RS04160 PF00881 Nitroreductase family ACRYD_RS04170 PF12848 ABC transporter ACRYD_RS04170 PF00005 ABC transporter ACRYD_RS04175 PF00533 BRCA1 C Terminus (BRCT) domain ACRYD_RS04175 PF01653 NAD-dependent DNA ligase adenylation domain ACRYD_RS04175 PF12826 Helix-hairpin-helix motif ACRYD_RS04175 PF03120 NAD-dependent DNA ligase OB-fold domain ACRYD_RS04180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS04180 PF00672 HAMP domain ACRYD_RS04180 PF02203 Tar ligand binding domain homologue ACRYD_RS04185 PF00672 HAMP domain ACRYD_RS04185 PF02203 Tar ligand binding domain homologue ACRYD_RS04185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS04190 PF03738 Glutathionylspermidine synthase preATP-grasp ACRYD_RS04200 PF00271 Helicase conserved C-terminal domain ACRYD_RS04200 PF00270 DEAD/DEAH box helicase ACRYD_RS04210 PF00005 ABC transporter ACRYD_RS04210 PF03412 Peptidase C39 family ACRYD_RS04210 PF00664 ABC transporter transmembrane region ACRYD_RS04215 PF13533 Biotin-lipoyl like ACRYD_RS04220 PF17874 MalT-like TPR region ACRYD_RS04220 PF00196 Bacterial regulatory proteins, luxR family ACRYD_RS04225 PF08501 Shikimate dehydrogenase substrate binding domain ACRYD_RS04235 PF02578 Multi-copper polyphenol oxidoreductase laccase ACRYD_RS04240 PF00551 Formyl transferase ACRYD_RS04240 PF01842 ACT domain ACRYD_RS04245 PF00588 SpoU rRNA Methylase family ACRYD_RS04250 PF05525 Branched-chain amino acid transport protein ACRYD_RS04275 PF00072 Response regulator receiver domain ACRYD_RS04275 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS04280 PF00672 HAMP domain ACRYD_RS04280 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS04280 PF13426 PAS domain ACRYD_RS04280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS04300 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_RS04305 PF00550 Phosphopantetheine attachment site ACRYD_RS04315 PF03062 MBOAT, membrane-bound O-acyltransferase family ACRYD_RS04320 PF13193 AMP-binding enzyme C-terminal domain ACRYD_RS04320 PF00501 AMP-binding enzyme ACRYD_RS04335 PF00795 Carbon-nitrogen hydrolase ACRYD_RS04340 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACRYD_RS04355 PF00171 Aldehyde dehydrogenase family ACRYD_RS04360 PF08543 Phosphomethylpyrimidine kinase ACRYD_RS04360 PF02581 Thiamine monophosphate synthase ACRYD_RS04380 PF13419 Haloacid dehalogenase-like hydrolase ACRYD_RS04385 PF03641 Possible lysine decarboxylase ACRYD_RS04405 PF01709 Transcriptional regulator ACRYD_RS04410 PF00664 ABC transporter transmembrane region ACRYD_RS04410 PF00005 ABC transporter ACRYD_RS04420 PF00072 Response regulator receiver domain ACRYD_RS04420 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS04425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS04435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS04435 PF08447 PAS fold ACRYD_RS04440 PF00672 HAMP domain ACRYD_RS04440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS04440 PF02203 Tar ligand binding domain homologue ACRYD_RS04445 PF01168 Alanine racemase, N-terminal domain ACRYD_RS04450 PF02163 Peptidase family M50 ACRYD_RS04450 PF17820 PDZ domain ACRYD_RS04455 PF01066 CDP-alcohol phosphatidyltransferase ACRYD_RS04465 PF00701 Dihydrodipicolinate synthetase family ACRYD_RS04470 PF05193 Peptidase M16 inactive domain ACRYD_RS04470 PF00675 Insulinase (Peptidase family M16) ACRYD_RS04475 PF01180 Dihydroorotate dehydrogenase ACRYD_RS04480 PF00005 ABC transporter ACRYD_RS04480 PF00664 ABC transporter transmembrane region ACRYD_RS04485 PF03023 Lipid II flippase MurJ ACRYD_RS04495 PF01475 Ferric uptake regulator family ACRYD_RS04500 PF02130 Uncharacterized protein family UPF0054 ACRYD_RS04510 PF18073 Rubredoxin metal binding domain ACRYD_RS04515 PF00476 DNA polymerase family A ACRYD_RS04515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACRYD_RS04515 PF01367 5'-3' exonuclease, C-terminal SAM fold ACRYD_RS04520 PF01699 Sodium/calcium exchanger protein ACRYD_RS04540 PF06580 Histidine kinase ACRYD_RS04540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS04540 PF13492 GAF domain ACRYD_RS04540 PF07694 5TMR of 5TMR-LYT ACRYD_RS04545 PF00072 Response regulator receiver domain ACRYD_RS04545 PF04397 LytTr DNA-binding domain ACRYD_RS04550 PF00563 EAL domain ACRYD_RS04550 PF12792 CSS motif domain associated with EAL ACRYD_RS04560 PF03109 ABC1 family ACRYD_RS04575 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ACRYD_RS04585 PF00762 Ferrochelatase ACRYD_RS04590 PF08212 Lipocalin-like domain ACRYD_RS04600 PF01370 NAD dependent epimerase/dehydratase family ACRYD_RS04600 PF08338 Domain of unknown function (DUF1731) ACRYD_RS04605 PF03441 FAD binding domain of DNA photolyase ACRYD_RS04605 PF00875 DNA photolyase ACRYD_RS04610 PF00271 Helicase conserved C-terminal domain ACRYD_RS04610 PF08463 EcoEI R protein C-terminal ACRYD_RS04610 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) ACRYD_RS04610 PF04851 Type III restriction enzyme, res subunit ACRYD_RS04620 PF13784 Fic/DOC family N-terminal ACRYD_RS04620 PF02661 Fic/DOC family ACRYD_RS04625 PF02384 N-6 DNA Methylase ACRYD_RS04625 PF12161 HsdM N-terminal domain ACRYD_RS04630 PF01420 Type I restriction modification DNA specificity domain ACRYD_RS04640 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACRYD_RS04645 PF17760 UvrA interaction domain ACRYD_RS04645 PF17755 UvrA DNA-binding domain ACRYD_RS04645 PF00005 ABC transporter ACRYD_RS04650 PF00563 EAL domain ACRYD_RS04650 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS04650 PF08448 PAS fold ACRYD_RS04665 PF00561 alpha/beta hydrolase fold ACRYD_RS04680 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ACRYD_RS04690 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ACRYD_RS04710 PF02540 NAD synthase ACRYD_RS04710 PF00117 Glutamine amidotransferase class-I ACRYD_RS04710 PF00958 GMP synthase C terminal domain ACRYD_RS04715 PF02910 Fumarate reductase flavoprotein C-term ACRYD_RS04715 PF00890 FAD binding domain ACRYD_RS04725 PF01863 Protein of unknown function DUF45 ACRYD_RS04730 PF00155 Aminotransferase class I and II ACRYD_RS04735 PF01966 HD domain ACRYD_RS04735 PF00072 Response regulator receiver domain ACRYD_RS04740 PF00211 Adenylate and Guanylate cyclase catalytic domain ACRYD_RS04765 PF00999 Sodium/hydrogen exchanger family ACRYD_RS04765 PF02254 TrkA-N domain ACRYD_RS04775 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS04775 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACRYD_RS04775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS04785 PF02600 Disulfide bond formation protein DsbB ACRYD_RS04800 PF08534 Redoxin ACRYD_RS04810 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACRYD_RS04815 PF01479 S4 domain ACRYD_RS04815 PF00849 RNA pseudouridylate synthase ACRYD_RS04820 PF13419 Haloacid dehalogenase-like hydrolase ACRYD_RS04835 PF07715 TonB-dependent Receptor Plug Domain ACRYD_RS04835 PF00593 TonB dependent receptor ACRYD_RS04840 PF01497 Periplasmic binding protein ACRYD_RS04845 PF00005 ABC transporter ACRYD_RS04850 PF01032 FecCD transport family ACRYD_RS04870 PF01761 3-dehydroquinate synthase ACRYD_RS04880 PF04055 Radical SAM superfamily ACRYD_RS04880 PF00919 Uncharacterized protein family UPF0004 ACRYD_RS04885 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_RS04885 PF17862 AAA+ lid domain ACRYD_RS04885 PF06480 FtsH Extracellular ACRYD_RS04885 PF01434 Peptidase family M41 ACRYD_RS04895 PF00994 Probable molybdopterin binding domain ACRYD_RS04900 PF12704 MacB-like periplasmic core domain ACRYD_RS04900 PF02687 FtsX-like permease family ACRYD_RS04905 PF07517 SecA DEAD-like domain ACRYD_RS04905 PF02810 SEC-C motif ACRYD_RS04905 PF07516 SecA Wing and Scaffold domain ACRYD_RS04905 PF01043 SecA preprotein cross-linking domain ACRYD_RS04905 PF00271 Helicase conserved C-terminal domain ACRYD_RS04910 PF03548 Outer membrane lipoprotein carrier protein LolA ACRYD_RS04920 PF17200 Single Cache domain 2 ACRYD_RS04920 PF07730 Histidine kinase ACRYD_RS04925 PF01546 Peptidase family M20/M25/M40 ACRYD_RS04925 PF07687 Peptidase dimerisation domain ACRYD_RS04930 PF01578 Cytochrome C assembly protein ACRYD_RS04930 PF05140 ResB-like family ACRYD_RS04935 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS04935 PF00072 Response regulator receiver domain ACRYD_RS04940 PF08003 Protein of unknown function (DUF1698) ACRYD_RS04945 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS04945 PF00360 Phytochrome region ACRYD_RS04945 PF01590 GAF domain ACRYD_RS04945 PF00563 EAL domain ACRYD_RS04955 PF00753 Metallo-beta-lactamase superfamily ACRYD_RS04980 PF00226 DnaJ domain ACRYD_RS04980 PF01556 DnaJ C terminal domain ACRYD_RS04980 PF00684 DnaJ central domain ACRYD_RS04985 PF00589 Phage integrase family ACRYD_RS04985 PF18644 Phage integrase SAM-like domain ACRYD_RS04990 PF00072 Response regulator receiver domain ACRYD_RS04990 PF01339 CheB methylesterase ACRYD_RS04995 PF03975 CheD chemotactic sensory transduction ACRYD_RS05000 PF03705 CheR methyltransferase, all-alpha domain ACRYD_RS05000 PF01739 CheR methyltransferase, SAM binding domain ACRYD_RS05005 PF01627 Hpt domain ACRYD_RS05005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS05005 PF02895 Signal transducing histidine kinase, homodimeric domain ACRYD_RS05005 PF09078 CheY binding ACRYD_RS05005 PF01584 CheW-like domain ACRYD_RS05010 PF00072 Response regulator receiver domain ACRYD_RS05015 PF00575 S1 RNA binding domain ACRYD_RS05015 PF03725 3' exoribonuclease family, domain 2 ACRYD_RS05015 PF01138 3' exoribonuclease family, domain 1 ACRYD_RS05015 PF00013 KH domain ACRYD_RS05015 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACRYD_RS05025 PF03968 OstA-like protein ACRYD_RS05025 PF04453 LPS transport system D ACRYD_RS05035 PF02844 Phosphoribosylglycinamide synthetase, N domain ACRYD_RS05035 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACRYD_RS05035 PF02843 Phosphoribosylglycinamide synthetase, C domain ACRYD_RS05045 PF01740 STAS domain ACRYD_RS05045 PF00916 Sulfate permease family ACRYD_RS05050 PF01926 50S ribosome-binding GTPase ACRYD_RS05050 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACRYD_RS05055 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ACRYD_RS05055 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ACRYD_RS05065 PF01580 FtsK/SpoIIIE family ACRYD_RS05065 PF17854 FtsK alpha domain ACRYD_RS05065 PF09397 Ftsk gamma domain ACRYD_RS05070 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACRYD_RS05070 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_RS05075 PF10369 Small subunit of acetolactate synthase ACRYD_RS05080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACRYD_RS05080 PF00205 Thiamine pyrophosphate enzyme, central domain ACRYD_RS05080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACRYD_RS05090 PF02541 Ppx/GppA phosphatase family ACRYD_RS05095 PF01066 CDP-alcohol phosphatidyltransferase ACRYD_RS05115 PF01171 PP-loop family ACRYD_RS05125 PF00994 Probable molybdopterin binding domain ACRYD_RS05125 PF03453 MoeA N-terminal region (domain I and II) ACRYD_RS05125 PF03454 MoeA C-terminal region (domain IV) ACRYD_RS05135 PF04228 Putative neutral zinc metallopeptidase ACRYD_RS05140 PF02646 RmuC family ACRYD_RS05145 PF16491 CAAX prenyl protease N-terminal, five membrane helices ACRYD_RS05145 PF01435 Peptidase family M48 ACRYD_RS05150 PF13091 PLD-like domain ACRYD_RS05155 PF03061 Thioesterase superfamily ACRYD_RS05160 PF00589 Phage integrase family ACRYD_RS05250 PF01381 Helix-turn-helix ACRYD_RS05250 PF00145 C-5 cytosine-specific DNA methylase ACRYD_RS05265 PF01432 Peptidase family M3 ACRYD_RS05270 PF17827 PrmC N-terminal domain ACRYD_RS05270 PF05175 Methyltransferase small domain ACRYD_RS05275 PF04055 Radical SAM superfamily ACRYD_RS05275 PF06969 HemN C-terminal domain ACRYD_RS05280 PF00293 NUDIX domain ACRYD_RS05285 PF13840 ACT domain ACRYD_RS05285 PF00696 Amino acid kinase family ACRYD_RS05285 PF01842 ACT domain ACRYD_RS05300 PF00809 Pterin binding enzyme ACRYD_RS05315 PF00317 Ribonucleotide reductase, all-alpha domain ACRYD_RS05315 PF02867 Ribonucleotide reductase, barrel domain ACRYD_RS05315 PF03477 ATP cone domain ACRYD_RS05340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS05340 PF07568 Histidine kinase ACRYD_RS05340 PF12282 Signal transduction histidine kinase ACRYD_RS05350 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACRYD_RS05350 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACRYD_RS05355 PF06969 HemN C-terminal domain ACRYD_RS05355 PF04055 Radical SAM superfamily ACRYD_RS05365 PF03594 Benzoate membrane transport protein ACRYD_RS05375 PF00202 Aminotransferase class-III ACRYD_RS05380 PF03473 MOSC domain ACRYD_RS05385 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ACRYD_RS05385 PF01113 Dihydrodipicolinate reductase, N-terminus ACRYD_RS05390 PF00005 ABC transporter ACRYD_RS05400 PF01595 Cyclin M transmembrane N-terminal domain ACRYD_RS05400 PF03471 Transporter associated domain ACRYD_RS05400 PF00571 CBS domain ACRYD_RS05405 PF00488 MutS domain V ACRYD_RS05405 PF01713 Smr domain ACRYD_RS05415 PF02618 YceG-like family ACRYD_RS05420 PF03971 Monomeric isocitrate dehydrogenase ACRYD_RS05425 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACRYD_RS05425 PF00056 lactate/malate dehydrogenase, NAD binding domain ACRYD_RS05455 PF01795 MraW methylase family ACRYD_RS05465 PF00216 Bacterial DNA-binding protein ACRYD_RS05515 PF01555 DNA methylase ACRYD_RS05545 PF00072 Response regulator receiver domain ACRYD_RS05555 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS05555 PF08447 PAS fold ACRYD_RS05555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS05555 PF00989 PAS fold ACRYD_RS05560 PF00226 DnaJ domain ACRYD_RS05560 PF01556 DnaJ C terminal domain ACRYD_RS05565 PF13411 MerR HTH family regulatory protein ACRYD_RS05570 PF03741 Integral membrane protein TerC family ACRYD_RS05575 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ACRYD_RS05580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_RS05585 PF02540 NAD synthase ACRYD_RS05600 PF00226 DnaJ domain ACRYD_RS05600 PF05099 Tellurite resistance protein TerB ACRYD_RS05605 PF13307 Helicase C-terminal domain ACRYD_RS05605 PF00929 Exonuclease ACRYD_RS05610 PF02547 Queuosine biosynthesis protein ACRYD_RS05615 PF00902 Sec-independent protein translocase protein (TatC) ACRYD_RS05620 PF02416 mttA/Hcf106 family ACRYD_RS05625 PF00248 Aldo/keto reductase family ACRYD_RS05645 PF02132 RecR protein ACRYD_RS05645 PF13662 Toprim domain ACRYD_RS05650 PF16326 ABC transporter C-terminal domain ACRYD_RS05650 PF00005 ABC transporter ACRYD_RS05650 PF12848 ABC transporter ACRYD_RS05655 PF09424 Yqey-like protein ACRYD_RS05660 PF04225 Opacity-associated protein A LysM-like domain ACRYD_RS05660 PF01551 Peptidase family M23 ACRYD_RS05670 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS05675 PF01361 Tautomerase enzyme ACRYD_RS05680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYD_RS05680 PF03466 LysR substrate binding domain ACRYD_RS05685 PF00218 Indole-3-glycerol phosphate synthase ACRYD_RS05695 PF03692 Putative zinc- or iron-chelating domain ACRYD_RS05700 PF05175 Methyltransferase small domain ACRYD_RS05710 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACRYD_RS05710 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ACRYD_RS05710 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ACRYD_RS05715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACRYD_RS05725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYD_RS05725 PF00929 Exonuclease ACRYD_RS05725 PF11490 DNA polymerase III polC-type N-terminus II ACRYD_RS05725 PF14579 Helix-hairpin-helix motif ACRYD_RS05725 PF02811 PHP domain ACRYD_RS05725 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYD_RS05725 PF14480 DNA polymerase III polC-type N-terminus I ACRYD_RS05730 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ACRYD_RS05735 PF00834 Ribulose-phosphate 3 epimerase family ACRYD_RS05740 PF02253 Phospholipase A1 ACRYD_RS05750 PF03841 L-seryl-tRNA selenium transferase ACRYD_RS05755 PF00009 Elongation factor Tu GTP binding domain ACRYD_RS05755 PF03144 Elongation factor Tu domain 2 ACRYD_RS05755 PF09105 Elongation factor SelB, winged helix ACRYD_RS05755 PF09107 Elongation factor SelB, winged helix ACRYD_RS05755 PF09106 Elongation factor SelB, winged helix ACRYD_RS05760 PF18364 Molybdopterin oxidoreductase N-terminal domain ACRYD_RS05760 PF00384 Molybdopterin oxidoreductase ACRYD_RS05760 PF01568 Molydopterin dinucleotide binding domain ACRYD_RS05775 PF02153 Prephenate dehydrogenase ACRYD_RS05775 PF01842 ACT domain ACRYD_RS05780 PF07244 Surface antigen variable number repeat ACRYD_RS05780 PF01103 Surface antigen ACRYD_RS05785 PF04055 Radical SAM superfamily ACRYD_RS05790 PF05193 Peptidase M16 inactive domain ACRYD_RS05795 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACRYD_RS05820 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ACRYD_RS05830 PF00133 tRNA synthetases class I (I, L, M and V) ACRYD_RS05830 PF09334 tRNA synthetases class I (M) ACRYD_RS05830 PF01588 Putative tRNA binding domain ACRYD_RS05845 PF01293 Phosphoenolpyruvate carboxykinase ACRYD_RS05855 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACRYD_RS05855 PF00925 GTP cyclohydrolase II ACRYD_RS05880 PF00293 NUDIX domain ACRYD_RS05885 PF04461 Protein of unknown function (DUF520) ACRYD_RS05890 PF04241 Protein of unknown function (DUF423) ACRYD_RS05895 PF00156 Phosphoribosyl transferase domain ACRYD_RS05900 PF06434 Aconitate hydratase 2 N-terminus ACRYD_RS05900 PF11791 Aconitate B N-terminal domain ACRYD_RS05900 PF00330 Aconitase family (aconitate hydratase) ACRYD_RS05910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYD_RS05920 PF00072 Response regulator receiver domain ACRYD_RS05920 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS05925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS05930 PF00893 Small Multidrug Resistance protein ACRYD_RS05970 PF01790 Prolipoprotein diacylglyceryl transferase ACRYD_RS05975 PF09411 Lipid A 3-O-deacylase (PagL) ACRYD_RS05985 PF01339 CheB methylesterase ACRYD_RS05985 PF00072 Response regulator receiver domain ACRYD_RS05995 PF02348 Cytidylyltransferase ACRYD_RS06000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS06000 PF00072 Response regulator receiver domain ACRYD_RS06020 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACRYD_RS06020 PF00005 ABC transporter ACRYD_RS06025 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACRYD_RS06030 PF02885 Glycosyl transferase family, helical bundle domain ACRYD_RS06030 PF00591 Glycosyl transferase family, a/b domain ACRYD_RS06040 PF00106 short chain dehydrogenase ACRYD_RS06055 PF00933 Glycosyl hydrolase family 3 N terminal domain ACRYD_RS06060 PF00684 DnaJ central domain ACRYD_RS06060 PF01556 DnaJ C terminal domain ACRYD_RS06060 PF00226 DnaJ domain ACRYD_RS06065 PF01556 DnaJ C terminal domain ACRYD_RS06065 PF00226 DnaJ domain ACRYD_RS06065 PF00684 DnaJ central domain ACRYD_RS06075 PF02203 Tar ligand binding domain homologue ACRYD_RS06075 PF00672 HAMP domain ACRYD_RS06075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS06080 PF03061 Thioesterase superfamily ACRYD_RS06085 PF00571 CBS domain ACRYD_RS06085 PF00478 IMP dehydrogenase / GMP reductase domain ACRYD_RS06090 PF01425 Amidase ACRYD_RS06095 PF01196 Ribosomal protein L17 ACRYD_RS06100 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACRYD_RS06100 PF01000 RNA polymerase Rpb3/RpoA insert domain ACRYD_RS06100 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACRYD_RS06105 PF00163 Ribosomal protein S4/S9 N-terminal domain ACRYD_RS06105 PF01479 S4 domain ACRYD_RS06110 PF00411 Ribosomal protein S11 ACRYD_RS06115 PF00416 Ribosomal protein S13/S18 ACRYD_RS06120 PF00444 Ribosomal protein L36 ACRYD_RS06135 PF00180 Isocitrate/isopropylmalate dehydrogenase ACRYD_RS06140 PF00694 Aconitase C-terminal domain ACRYD_RS06145 PF00140 Sigma-70 factor, region 1.2 ACRYD_RS06145 PF04545 Sigma-70, region 4 ACRYD_RS06145 PF04539 Sigma-70 region 3 ACRYD_RS06145 PF04542 Sigma-70 region 2 ACRYD_RS06150 PF02092 Glycyl-tRNA synthetase beta subunit ACRYD_RS06165 PF02527 rRNA small subunit methyltransferase G ACRYD_RS06170 PF00925 GTP cyclohydrolase II ACRYD_RS06175 PF00490 Delta-aminolevulinic acid dehydratase ACRYD_RS06205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACRYD_RS06205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACRYD_RS06205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACRYD_RS06205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACRYD_RS06210 PF00483 Nucleotidyl transferase ACRYD_RS06215 PF00342 Phosphoglucose isomerase ACRYD_RS06230 PF02719 Polysaccharide biosynthesis protein ACRYD_RS06235 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ACRYD_RS06245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_RS06250 PF17836 PglD N-terminal domain ACRYD_RS06250 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_RS06255 PF02397 Bacterial sugar transferase ACRYD_RS06270 PF02350 UDP-N-acetylglucosamine 2-epimerase ACRYD_RS06280 PF00977 Histidine biosynthesis protein ACRYD_RS06285 PF00117 Glutamine amidotransferase class-I ACRYD_RS06290 PF13537 Glutamine amidotransferase domain ACRYD_RS06290 PF00733 Asparagine synthase ACRYD_RS06295 PF00117 Glutamine amidotransferase class-I ACRYD_RS06295 PF00958 GMP synthase C terminal domain ACRYD_RS06295 PF02540 NAD synthase ACRYD_RS06320 PF13537 Glutamine amidotransferase domain ACRYD_RS06320 PF00733 Asparagine synthase ACRYD_RS06330 PF00459 Inositol monophosphatase family ACRYD_RS06340 PF02080 TrkA-C domain ACRYD_RS06340 PF03600 Citrate transporter ACRYD_RS06345 PF00009 Elongation factor Tu GTP binding domain ACRYD_RS06350 PF01507 Phosphoadenosine phosphosulfate reductase family ACRYD_RS06355 PF01757 Acyltransferase family ACRYD_RS06360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYD_RS06365 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_RS06375 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACRYD_RS06375 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACRYD_RS06380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACRYD_RS06380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACRYD_RS06380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACRYD_RS06405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACRYD_RS06405 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACRYD_RS06405 PF02142 MGS-like domain ACRYD_RS06415 PF00561 alpha/beta hydrolase fold ACRYD_RS06425 PF04143 Sulphur transport ACRYD_RS06430 PF00091 Tubulin/FtsZ family, GTPase domain ACRYD_RS06430 PF12327 FtsZ family, C-terminal domain ACRYD_RS06435 PF02491 SHS2 domain inserted in FTSA ACRYD_RS06445 PF14490 Helix-hairpin-helix containing domain ACRYD_RS06445 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain ACRYD_RS06445 PF13538 UvrD-like helicase C-terminal domain ACRYD_RS06455 PF11798 IMS family HHH motif ACRYD_RS06455 PF11799 impB/mucB/samB family C-terminal domain ACRYD_RS06455 PF00817 impB/mucB/samB family ACRYD_RS06465 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYD_RS06465 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ACRYD_RS06465 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACRYD_RS06470 PF16326 ABC transporter C-terminal domain ACRYD_RS06470 PF12848 ABC transporter ACRYD_RS06470 PF00005 ABC transporter ACRYD_RS06475 PF04055 Radical SAM superfamily ACRYD_RS06480 PF10437 Bacterial lipoate protein ligase C-terminus ACRYD_RS06480 PF03099 Biotin/lipoate A/B protein ligase family ACRYD_RS06485 PF17831 Pyruvate dehydrogenase E1 component middle domain ACRYD_RS06485 PF00456 Transketolase, thiamine diphosphate binding domain ACRYD_RS06490 PF02817 e3 binding domain ACRYD_RS06490 PF00364 Biotin-requiring enzyme ACRYD_RS06490 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACRYD_RS06495 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYD_RS06495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACRYD_RS06505 PF00905 Penicillin binding protein transpeptidase domain ACRYD_RS06510 PF00403 Heavy-metal-associated domain ACRYD_RS06515 PF00270 DEAD/DEAH box helicase ACRYD_RS06515 PF00271 Helicase conserved C-terminal domain ACRYD_RS06530 PF02203 Tar ligand binding domain homologue ACRYD_RS06530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS06530 PF00672 HAMP domain ACRYD_RS06535 PF00075 RNase H ACRYD_RS06540 PF00682 HMGL-like ACRYD_RS06550 PF01312 FlhB HrpN YscU SpaS Family ACRYD_RS06560 PF00583 Acetyltransferase (GNAT) family ACRYD_RS06565 PF01926 50S ribosome-binding GTPase ACRYD_RS06585 PF00475 Imidazoleglycerol-phosphate dehydratase ACRYD_RS06590 PF03330 Lytic transglycolase ACRYD_RS06590 PF05036 Sporulation related domain ACRYD_RS06600 PF01026 TatD related DNase ACRYD_RS06610 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYD_RS06610 PF07724 AAA domain (Cdc48 subfamily) ACRYD_RS06615 PF00227 Proteasome subunit ACRYD_RS06620 PF03948 Ribosomal protein L9, C-terminal domain ACRYD_RS06620 PF01281 Ribosomal protein L9, N-terminal domain ACRYD_RS06630 PF02441 Flavoprotein ACRYD_RS06635 PF01467 Cytidylyltransferase-like ACRYD_RS06640 PF02223 Thymidylate kinase ACRYD_RS06645 PF13393 Histidyl-tRNA synthetase ACRYD_RS06645 PF03129 Anticodon binding domain ACRYD_RS06650 PF17810 Arginine decarboxylase helical bundle domain ACRYD_RS06650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACRYD_RS06650 PF17944 Arginine decarboxylase C-terminal helical extension ACRYD_RS06655 PF06426 Serine acetyltransferase, N-terminal ACRYD_RS06655 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYD_RS06660 PF01925 Sulfite exporter TauE/SafE ACRYD_RS06675 PF06865 Pyrimidine/purine nucleoside phosphorylase ACRYD_RS06690 PF08668 HDOD domain ACRYD_RS06695 PF06071 Protein of unknown function (DUF933) ACRYD_RS06695 PF01926 50S ribosome-binding GTPase ACRYD_RS06710 PF00085 Thioredoxin ACRYD_RS06715 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACRYD_RS06715 PF00578 AhpC/TSA family ACRYD_RS06720 PF02203 Tar ligand binding domain homologue ACRYD_RS06720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS06720 PF00672 HAMP domain ACRYD_RS06725 PF00672 HAMP domain ACRYD_RS06725 PF00072 Response regulator receiver domain ACRYD_RS06725 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACRYD_RS06725 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS06725 PF01627 Hpt domain ACRYD_RS06725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS06730 PF00072 Response regulator receiver domain ACRYD_RS06735 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS06740 PF01627 Hpt domain ACRYD_RS06740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACRYD_RS06740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS06740 PF00672 HAMP domain ACRYD_RS06740 PF00072 Response regulator receiver domain ACRYD_RS06740 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS06745 PF03601 Conserved hypothetical protein 698 ACRYD_RS06750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYD_RS06750 PF03466 LysR substrate binding domain ACRYD_RS06755 PF00891 O-methyltransferase domain ACRYD_RS06760 PF08386 TAP-like protein ACRYD_RS06760 PF00561 alpha/beta hydrolase fold ACRYD_RS06775 PF02801 Beta-ketoacyl synthase, C-terminal domain ACRYD_RS06775 PF00109 Beta-ketoacyl synthase, N-terminal domain ACRYD_RS06780 PF01494 FAD binding domain ACRYD_RS06785 PF00550 Phosphopantetheine attachment site ACRYD_RS06805 PF00221 Aromatic amino acid lyase ACRYD_RS06835 PF00005 ABC transporter ACRYD_RS06850 PF02801 Beta-ketoacyl synthase, C-terminal domain ACRYD_RS06850 PF00109 Beta-ketoacyl synthase, N-terminal domain ACRYD_RS06870 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACRYD_RS06870 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACRYD_RS06885 PF08497 Radical SAM N-terminal ACRYD_RS06885 PF04055 Radical SAM superfamily ACRYD_RS06895 PF00152 tRNA synthetases class II (D, K and N) ACRYD_RS06895 PF01336 OB-fold nucleic acid binding domain ACRYD_RS06895 PF02938 GAD domain ACRYD_RS06905 PF03167 Uracil DNA glycosylase superfamily ACRYD_RS06910 PF01176 Translation initiation factor 1A / IF-1 ACRYD_RS06915 PF00557 Metallopeptidase family M24 ACRYD_RS06920 PF00344 SecY translocase ACRYD_RS06925 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACRYD_RS06930 PF00333 Ribosomal protein S5, N-terminal domain ACRYD_RS06930 PF03719 Ribosomal protein S5, C-terminal domain ACRYD_RS06935 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACRYD_RS06940 PF00347 Ribosomal protein L6 ACRYD_RS06945 PF00410 Ribosomal protein S8 ACRYD_RS06950 PF00253 Ribosomal protein S14p/S29e ACRYD_RS06955 PF00673 ribosomal L5P family C-terminus ACRYD_RS06955 PF00281 Ribosomal protein L5 ACRYD_RS06960 PF00467 KOW motif ACRYD_RS06960 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACRYD_RS06965 PF00238 Ribosomal protein L14p/L23e ACRYD_RS06970 PF00366 Ribosomal protein S17 ACRYD_RS06975 PF00831 Ribosomal L29 protein ACRYD_RS06980 PF00252 Ribosomal protein L16p/L10e ACRYD_RS06985 PF07650 KH domain ACRYD_RS06985 PF00189 Ribosomal protein S3, C-terminal domain ACRYD_RS06990 PF00237 Ribosomal protein L22p/L17e ACRYD_RS06995 PF00203 Ribosomal protein S19 ACRYD_RS07000 PF00181 Ribosomal Proteins L2, RNA binding domain ACRYD_RS07000 PF03947 Ribosomal Proteins L2, C-terminal domain ACRYD_RS07005 PF00276 Ribosomal protein L23 ACRYD_RS07010 PF00573 Ribosomal protein L4/L1 family ACRYD_RS07015 PF00297 Ribosomal protein L3 ACRYD_RS07020 PF00338 Ribosomal protein S10p/S20e ACRYD_RS07040 PF03372 Endonuclease/Exonuclease/phosphatase family ACRYD_RS07045 PF02568 Thiamine biosynthesis protein (ThiI) ACRYD_RS07045 PF02926 THUMP domain ACRYD_RS07075 PF00665 Integrase core domain ACRYD_RS07095 PF04760 Translation initiation factor IF-2, N-terminal region ACRYD_RS07095 PF11987 Translation-initiation factor 2 ACRYD_RS07095 PF00009 Elongation factor Tu GTP binding domain ACRYD_RS07100 PF18766 SWI2/SNF2 ATPase ACRYD_RS07100 PF12008 Type I restriction and modification enzyme - subunit R C terminal ACRYD_RS07100 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACRYD_RS07110 PF00912 Transglycosylase ACRYD_RS07125 PF02384 N-6 DNA Methylase ACRYD_RS07125 PF12161 HsdM N-terminal domain ACRYD_RS07175 PF02086 D12 class N6 adenine-specific DNA methyltransferase ACRYD_RS07200 PF01078 Magnesium chelatase, subunit ChlI ACRYD_RS07200 PF13335 Magnesium chelatase, subunit ChlI C-terminal ACRYD_RS07205 PF00672 HAMP domain ACRYD_RS07205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS07205 PF02203 Tar ligand binding domain homologue ACRYD_RS07210 PF08447 PAS fold ACRYD_RS07210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS07220 PF01327 Polypeptide deformylase ACRYD_RS07225 PF00574 Clp protease ACRYD_RS07230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACRYD_RS07230 PF05698 Bacterial trigger factor protein (TF) C-terminus ACRYD_RS07230 PF05697 Bacterial trigger factor protein (TF) ACRYD_RS07235 PF03976 Polyphosphate kinase 2 (PPK2) ACRYD_RS07240 PF03976 Polyphosphate kinase 2 (PPK2) ACRYD_RS07245 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACRYD_RS07250 PF16653 Saccharopine dehydrogenase C-terminal domain ACRYD_RS07250 PF03435 Saccharopine dehydrogenase NADP binding domain ACRYD_RS07260 PF02698 DUF218 domain ACRYD_RS07265 PF01875 Memo-like protein ACRYD_RS07280 PF00034 Cytochrome c ACRYD_RS07285 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACRYD_RS07290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYD_RS07295 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYD_RS07310 PF13186 Iron-sulfur cluster-binding domain ACRYD_RS07310 PF04055 Radical SAM superfamily ACRYD_RS07320 PF10414 Sirohaem synthase dimerisation region ACRYD_RS07320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACRYD_RS07320 PF14824 Sirohaem biosynthesis protein central ACRYD_RS07330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACRYD_RS07330 PF14824 Sirohaem biosynthesis protein central ACRYD_RS07330 PF10414 Sirohaem synthase dimerisation region ACRYD_RS07335 PF17805 AsnC-like ligand binding domain ACRYD_RS07350 PF00762 Ferrochelatase ACRYD_RS07355 PF00005 ABC transporter ACRYD_RS07360 PF00313 'Cold-shock' DNA-binding domain ACRYD_RS07365 PF00149 Calcineurin-like phosphoesterase ACRYD_RS07375 PF02770 Acyl-CoA dehydrogenase, middle domain ACRYD_RS07375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACRYD_RS07375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACRYD_RS07405 PF00403 Heavy-metal-associated domain ACRYD_RS07410 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS07410 PF08495 FIST N domain ACRYD_RS07410 PF10442 FIST C domain ACRYD_RS07410 PF00563 EAL domain ACRYD_RS07415 PF00625 Guanylate kinase ACRYD_RS07425 PF00005 ABC transporter ACRYD_RS07430 PF00889 Elongation factor TS ACRYD_RS07435 PF00318 Ribosomal protein S2 ACRYD_RS07440 PF08245 Mur ligase middle domain ACRYD_RS07440 PF02875 Mur ligase family, glutamate ligase domain ACRYD_RS07455 PF00133 tRNA synthetases class I (I, L, M and V) ACRYD_RS07455 PF08264 Anticodon-binding domain of tRNA ACRYD_RS07460 PF06039 Malate:quinone oxidoreductase (Mqo) ACRYD_RS07465 PF02464 Competence-damaged protein ACRYD_RS07465 PF18146 Damage-inducible protein CinA KH domain ACRYD_RS07465 PF00994 Probable molybdopterin binding domain ACRYD_RS07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS07510 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS07515 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS07515 PF00072 Response regulator receiver domain ACRYD_RS07525 PF00474 Sodium:solute symporter family ACRYD_RS07535 PF11490 DNA polymerase III polC-type N-terminus II ACRYD_RS07535 PF02811 PHP domain ACRYD_RS07535 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYD_RS07535 PF00929 Exonuclease ACRYD_RS07535 PF14579 Helix-hairpin-helix motif ACRYD_RS07535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYD_RS07545 PF00474 Sodium:solute symporter family ACRYD_RS07555 PF00474 Sodium:solute symporter family ACRYD_RS07565 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYD_RS07565 PF02811 PHP domain ACRYD_RS07565 PF14579 Helix-hairpin-helix motif ACRYD_RS07565 PF00929 Exonuclease ACRYD_RS07565 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYD_RS07575 PF00871 Acetokinase family ACRYD_RS07580 PF01515 Phosphate acetyl/butaryl transferase ACRYD_RS07585 PF00871 Acetokinase family ACRYD_RS07590 PF01343 Peptidase family S49 ACRYD_RS07595 PF01979 Amidohydrolase family ACRYD_RS07600 PF01220 Dehydroquinase class II ACRYD_RS07605 PF01321 Creatinase/Prolidase N-terminal domain ACRYD_RS07605 PF00557 Metallopeptidase family M24 ACRYD_RS07610 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACRYD_RS07630 PF14572 Phosphoribosyl synthetase-associated domain ACRYD_RS07630 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACRYD_RS07635 PF00691 OmpA family ACRYD_RS07635 PF05736 OprF membrane domain ACRYD_RS07640 PF06421 GTP-binding protein LepA C-terminus ACRYD_RS07640 PF03144 Elongation factor Tu domain 2 ACRYD_RS07640 PF00009 Elongation factor Tu GTP binding domain ACRYD_RS07640 PF00679 Elongation factor G C-terminus ACRYD_RS07645 PF00156 Phosphoribosyl transferase domain ACRYD_RS07650 PF00117 Glutamine amidotransferase class-I ACRYD_RS07655 PF00977 Histidine biosynthesis protein ACRYD_RS07660 PF00072 Response regulator receiver domain ACRYD_RS07660 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS07670 PF01914 MarC family integral membrane protein ACRYD_RS07675 PF05188 MutS domain II ACRYD_RS07675 PF05192 MutS domain III ACRYD_RS07675 PF01624 MutS domain I ACRYD_RS07675 PF05190 MutS family domain IV ACRYD_RS07675 PF00488 MutS domain V ACRYD_RS07690 PF08502 LeuA allosteric (dimerisation) domain ACRYD_RS07690 PF00682 HMGL-like ACRYD_RS07695 PF17862 AAA+ lid domain ACRYD_RS07695 PF00004 ATPase family associated with various cellular activities (AAA) ACRYD_RS07695 PF01434 Peptidase family M41 ACRYD_RS07705 PF01207 Dihydrouridine synthase (Dus) ACRYD_RS07715 PF02590 Predicted SPOUT methyltransferase ACRYD_RS07720 PF02581 Thiamine monophosphate synthase ACRYD_RS07725 PF01039 Carboxyl transferase domain ACRYD_RS07725 PF17848 Acetyl-coA carboxylase zinc finger domain ACRYD_RS07730 PF02772 S-adenosylmethionine synthetase, central domain ACRYD_RS07730 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACRYD_RS07730 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACRYD_RS07735 PF01380 SIS domain ACRYD_RS07740 PF00459 Inositol monophosphatase family ACRYD_RS07750 PF00672 HAMP domain ACRYD_RS07750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS07750 PF02203 Tar ligand binding domain homologue ACRYD_RS07790 PF02789 Cytosol aminopeptidase family, N-terminal domain ACRYD_RS07790 PF00883 Cytosol aminopeptidase family, catalytic domain ACRYD_RS07800 PF00291 Pyridoxal-phosphate dependent enzyme ACRYD_RS07805 PF00156 Phosphoribosyl transferase domain ACRYD_RS07810 PF14743 DNA ligase OB-like domain ACRYD_RS07810 PF01068 ATP dependent DNA ligase domain ACRYD_RS07815 PF01053 Cys/Met metabolism PLP-dependent enzyme ACRYD_RS07820 PF01053 Cys/Met metabolism PLP-dependent enzyme ACRYD_RS07845 PF06965 Na+/H+ antiporter 1 ACRYD_RS07885 PF00696 Amino acid kinase family ACRYD_RS07890 PF01192 RNA polymerase Rpb6 ACRYD_RS07895 PF04607 Region found in RelA / SpoT proteins ACRYD_RS07895 PF02824 TGS domain ACRYD_RS07895 PF13291 ACT domain ACRYD_RS07900 PF01479 S4 domain ACRYD_RS07900 PF00579 tRNA synthetases class I (W and Y) ACRYD_RS07910 PF01520 N-acetylmuramoyl-L-alanine amidase ACRYD_RS07925 PF01195 Peptidyl-tRNA hydrolase ACRYD_RS07930 PF14693 Ribosomal protein TL5, C-terminal domain ACRYD_RS07930 PF01386 Ribosomal L25p family ACRYD_RS07935 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACRYD_RS07935 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACRYD_RS07940 PF10502 Signal peptidase, peptidase S26 ACRYD_RS07945 PF02502 Ribose/Galactose Isomerase ACRYD_RS07985 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS07985 PF08495 FIST N domain ACRYD_RS07985 PF00563 EAL domain ACRYD_RS07985 PF10442 FIST C domain ACRYD_RS07990 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ACRYD_RS07990 PF01243 Pyridoxamine 5'-phosphate oxidase ACRYD_RS07995 PF01545 Cation efflux family ACRYD_RS07995 PF16916 Dimerisation domain of Zinc Transporter ACRYD_RS08000 PF03707 Bacterial signalling protein N terminal repeat ACRYD_RS08000 PF00563 EAL domain ACRYD_RS08000 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS08005 PF00271 Helicase conserved C-terminal domain ACRYD_RS08005 PF00270 DEAD/DEAH box helicase ACRYD_RS08005 PF03880 DbpA RNA binding domain ACRYD_RS08025 PF00183 Hsp90 protein ACRYD_RS08030 PF00360 Phytochrome region ACRYD_RS08030 PF01590 GAF domain ACRYD_RS08030 PF00563 EAL domain ACRYD_RS08030 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS08035 PF01627 Hpt domain ACRYD_RS08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS08035 PF00072 Response regulator receiver domain ACRYD_RS08035 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACRYD_RS08035 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS08035 PF00672 HAMP domain ACRYD_RS08050 PF00491 Arginase family ACRYD_RS08060 PF08713 DNA alkylation repair enzyme ACRYD_RS08065 PF04073 Aminoacyl-tRNA editing domain ACRYD_RS08100 PF04403 Paraquat-inducible protein A ACRYD_RS08105 PF02470 MlaD protein ACRYD_RS08110 PF00199 Catalase ACRYD_RS08110 PF06628 Catalase-related immune-responsive ACRYD_RS08115 PF00023 Ankyrin repeat ACRYD_RS08115 PF12796 Ankyrin repeats (3 copies) ACRYD_RS08125 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACRYD_RS08125 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACRYD_RS08130 PF08502 LeuA allosteric (dimerisation) domain ACRYD_RS08130 PF00682 HMGL-like ACRYD_RS08135 PF12833 Helix-turn-helix domain ACRYD_RS08140 PF13302 Acetyltransferase (GNAT) domain ACRYD_RS08140 PF03352 Methyladenine glycosylase ACRYD_RS08140 PF00117 Glutamine amidotransferase class-I ACRYD_RS08140 PF00958 GMP synthase C terminal domain ACRYD_RS08140 PF13673 Acetyltransferase (GNAT) domain ACRYD_RS08145 PF00924 Mechanosensitive ion channel ACRYD_RS08150 PF02833 DHHA2 domain ACRYD_RS08150 PF01368 DHH family ACRYD_RS08165 PF10415 Fumarase C C-terminus ACRYD_RS08165 PF00206 Lyase ACRYD_RS08170 PF01048 Phosphorylase superfamily ACRYD_RS08175 PF00698 Acyl transferase domain ACRYD_RS08180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACRYD_RS08195 PF04052 TolB amino-terminal domain ACRYD_RS08205 PF02472 Biopolymer transport protein ExbD/TolR ACRYD_RS08210 PF01618 MotA/TolQ/ExbB proton channel family ACRYD_RS08215 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACRYD_RS08220 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACRYD_RS08220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYD_RS08225 PF00231 ATP synthase ACRYD_RS08230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYD_RS08230 PF00306 ATP synthase alpha/beta chain, C terminal domain ACRYD_RS08230 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACRYD_RS08235 PF00213 ATP synthase delta (OSCP) subunit ACRYD_RS08240 PF00430 ATP synthase B/B' CF(0) ACRYD_RS08250 PF17762 HTH domain found in ParB protein ACRYD_RS08250 PF02195 ParB-like nuclease domain ACRYD_RS08255 PF13614 AAA domain ACRYD_RS08270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS08270 PF08447 PAS fold ACRYD_RS08275 PF02911 Formyl transferase, C-terminal domain ACRYD_RS08275 PF00551 Formyl transferase ACRYD_RS08280 PF00696 Amino acid kinase family ACRYD_RS08285 PF01018 GTP1/OBG ACRYD_RS08285 PF01926 50S ribosome-binding GTPase ACRYD_RS08290 PF01016 Ribosomal L27 protein ACRYD_RS08295 PF00829 Ribosomal prokaryotic L21 protein ACRYD_RS08300 PF01807 CHC2 zinc finger ACRYD_RS08300 PF16730 DnaG-primase C-terminal, helicase-binding domain ACRYD_RS08300 PF08275 DNA primase catalytic core, N-terminal domain ACRYD_RS08300 PF13662 Toprim domain ACRYD_RS08310 PF00035 Double-stranded RNA binding motif ACRYD_RS08310 PF14622 Ribonuclease-III-like ACRYD_RS08315 PF01264 Chorismate synthase ACRYD_RS08325 PF03976 Polyphosphate kinase 2 (PPK2) ACRYD_RS08340 PF01625 Peptide methionine sulfoxide reductase ACRYD_RS08350 PF00202 Aminotransferase class-III ACRYD_RS08355 PF08447 PAS fold ACRYD_RS08355 PF08448 PAS fold ACRYD_RS08355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS08360 PF01808 AICARFT/IMPCHase bienzyme ACRYD_RS08360 PF02142 MGS-like domain ACRYD_RS08365 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACRYD_RS08365 PF02769 AIR synthase related protein, C-terminal domain ACRYD_RS08365 PF00586 AIR synthase related protein, N-terminal domain ACRYD_RS08375 PF01464 Transglycosylase SLT domain ACRYD_RS08375 PF10145 Phage-related minor tail protein ACRYD_RS08375 PF01551 Peptidase family M23 ACRYD_RS08380 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACRYD_RS08380 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACRYD_RS08395 PF16921 Tex protein YqgF-like domain ACRYD_RS08395 PF09371 Tex-like protein N-terminal domain ACRYD_RS08395 PF00575 S1 RNA binding domain ACRYD_RS08395 PF17674 HHH domain ACRYD_RS08400 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ACRYD_RS08405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACRYD_RS08410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACRYD_RS08415 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACRYD_RS08415 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACRYD_RS08425 PF10531 SLBB domain ACRYD_RS08425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACRYD_RS08425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACRYD_RS08430 PF00285 Citrate synthase, C-terminal domain ACRYD_RS08435 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ACRYD_RS08435 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACRYD_RS08435 PF00384 Molybdopterin oxidoreductase ACRYD_RS08440 PF00146 NADH dehydrogenase ACRYD_RS08445 PF12838 4Fe-4S dicluster domain ACRYD_RS08450 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACRYD_RS08455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACRYD_RS08460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACRYD_RS08460 PF00361 Proton-conducting membrane transporter ACRYD_RS08465 PF00361 Proton-conducting membrane transporter ACRYD_RS08465 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ACRYD_RS08470 PF00361 Proton-conducting membrane transporter ACRYD_RS08475 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACRYD_RS08480 PF02910 Fumarate reductase flavoprotein C-term ACRYD_RS08480 PF00890 FAD binding domain ACRYD_RS08485 PF13183 4Fe-4S dicluster domain ACRYD_RS08485 PF13085 2Fe-2S iron-sulfur cluster binding domain ACRYD_RS08490 PF00350 Dynamin family ACRYD_RS08495 PF00350 Dynamin family ACRYD_RS08505 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACRYD_RS08505 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACRYD_RS08510 PF02504 Fatty acid synthesis protein ACRYD_RS08515 PF01783 Ribosomal L32p protein family ACRYD_RS08525 PF00334 Nucleoside diphosphate kinase ACRYD_RS08535 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACRYD_RS08535 PF00578 AhpC/TSA family ACRYD_RS08540 PF07497 Rho termination factor, RNA-binding domain ACRYD_RS08540 PF07498 Rho termination factor, N-terminal domain ACRYD_RS08540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYD_RS08545 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACRYD_RS08545 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACRYD_RS08550 PF01177 Asp/Glu/Hydantoin racemase ACRYD_RS08555 PF12169 DNA polymerase III subunits gamma and tau domain III ACRYD_RS08555 PF12170 DNA polymerase III tau subunit V interacting with alpha ACRYD_RS08565 PF03900 Porphobilinogen deaminase, C-terminal domain ACRYD_RS08565 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACRYD_RS08570 PF00857 Isochorismatase family ACRYD_RS08595 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ACRYD_RS08595 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYD_RS08610 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACRYD_RS08615 PF01668 SmpB protein ACRYD_RS08620 PF00288 GHMP kinases N terminal domain ACRYD_RS08625 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACRYD_RS08630 PF13361 UvrD-like helicase C-terminal domain ACRYD_RS08630 PF00580 UvrD/REP helicase N-terminal domain ACRYD_RS08635 PF03466 LysR substrate binding domain ACRYD_RS08635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYD_RS08640 PF04055 Radical SAM superfamily ACRYD_RS08640 PF16199 Radical_SAM C-terminal domain ACRYD_RS08645 PF13537 Glutamine amidotransferase domain ACRYD_RS08645 PF00156 Phosphoribosyl transferase domain ACRYD_RS08650 PF05173 Dihydrodipicolinate reductase, C-terminus ACRYD_RS08650 PF01113 Dihydrodipicolinate reductase, N-terminus ACRYD_RS08655 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYD_RS08660 PF00085 Thioredoxin ACRYD_RS08665 PF01411 tRNA synthetases class II (A) ACRYD_RS08665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACRYD_RS08665 PF02272 DHHA1 domain ACRYD_RS08695 PF00072 Response regulator receiver domain ACRYD_RS08695 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS08700 PF17820 PDZ domain ACRYD_RS08700 PF13180 PDZ domain ACRYD_RS08705 PF00920 Dehydratase family ACRYD_RS08730 PF09383 NIL domain ACRYD_RS08730 PF00005 ABC transporter ACRYD_RS08750 PF01142 tRNA pseudouridine synthase D (TruD) ACRYD_RS08765 PF13180 PDZ domain ACRYD_RS08765 PF03572 Peptidase family S41 ACRYD_RS08770 PF01259 SAICAR synthetase ACRYD_RS08775 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ACRYD_RS08790 PF01553 Acyltransferase ACRYD_RS08795 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ACRYD_RS08800 PF02416 mttA/Hcf106 family ACRYD_RS08805 PF02416 mttA/Hcf106 family ACRYD_RS08810 PF05746 DALR anticodon binding domain ACRYD_RS08810 PF00750 tRNA synthetases class I (R) ACRYD_RS08810 PF03485 Arginyl tRNA synthetase N terminal domain ACRYD_RS08820 PF01467 Cytidylyltransferase-like ACRYD_RS08825 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACRYD_RS08825 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACRYD_RS08830 PF00162 Phosphoglycerate kinase ACRYD_RS08835 PF00121 Triosephosphate isomerase ACRYD_RS08845 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACRYD_RS08845 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACRYD_RS08850 PF00800 Prephenate dehydratase ACRYD_RS08850 PF01842 ACT domain ACRYD_RS08850 PF01817 Chorismate mutase type II ACRYD_RS08855 PF00155 Aminotransferase class I and II ACRYD_RS08860 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ACRYD_RS08860 PF02779 Transketolase, pyrimidine binding domain ACRYD_RS08860 PF02780 Transketolase, C-terminal domain ACRYD_RS08865 PF00034 Cytochrome c ACRYD_RS08865 PF03150 Di-haem cytochrome c peroxidase ACRYD_RS08875 PF02545 Maf-like protein ACRYD_RS08885 PF00877 NlpC/P60 family ACRYD_RS08895 PF00939 Sodium:sulfate symporter transmembrane region ACRYD_RS08905 PF00085 Thioredoxin ACRYD_RS08905 PF02683 Cytochrome C biogenesis protein transmembrane region ACRYD_RS08905 PF11412 Disulphide bond corrector protein DsbC ACRYD_RS08910 PF00085 Thioredoxin ACRYD_RS08915 PF18030 RimK PreATP-grasp domain ACRYD_RS08915 PF08443 RimK-like ATP-grasp domain ACRYD_RS08930 PF10442 FIST C domain ACRYD_RS08930 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS08930 PF00563 EAL domain ACRYD_RS08930 PF08495 FIST N domain ACRYD_RS08935 PF02666 Phosphatidylserine decarboxylase ACRYD_RS08945 PF04055 Radical SAM superfamily ACRYD_RS08955 PF00484 Carbonic anhydrase ACRYD_RS08960 PF00155 Aminotransferase class I and II ACRYD_RS08965 PF02021 Uncharacterised protein family UPF0102 ACRYD_RS08975 PF02887 Pyruvate kinase, alpha/beta domain ACRYD_RS08975 PF00224 Pyruvate kinase, barrel domain ACRYD_RS08975 PF00391 PEP-utilising enzyme, mobile domain ACRYD_RS08985 PF00672 HAMP domain ACRYD_RS08985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS08985 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS08985 PF13426 PAS domain ACRYD_RS08990 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS08990 PF00072 Response regulator receiver domain ACRYD_RS09000 PF02561 Flagellar protein FliS ACRYD_RS09005 PF07196 Flagellin hook IN motif ACRYD_RS09005 PF07195 Flagellar hook-associated protein 2 C-terminus ACRYD_RS09005 PF02465 Flagellar hook-associated protein 2 N-terminus ACRYD_RS09015 PF02107 Flagellar L-ring protein ACRYD_RS09040 PF01313 Bacterial export proteins, family 3 ACRYD_RS09050 PF02119 Flagellar P-ring protein ACRYD_RS09055 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACRYD_RS09055 PF02154 Flagellar motor switch protein FliM ACRYD_RS09065 PF00543 Nitrogen regulatory protein P-II ACRYD_RS09070 PF00909 Ammonium Transporter Family ACRYD_RS09075 PF12796 Ankyrin repeats (3 copies) ACRYD_RS09075 PF13606 Ankyrin repeat ACRYD_RS09080 PF08335 GlnD PII-uridylyltransferase ACRYD_RS09080 PF01966 HD domain ACRYD_RS09090 PF02040 Arsenical pump membrane protein ACRYD_RS09105 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ACRYD_RS09120 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACRYD_RS09130 PF00456 Transketolase, thiamine diphosphate binding domain ACRYD_RS09130 PF02780 Transketolase, C-terminal domain ACRYD_RS09130 PF02779 Transketolase, pyrimidine binding domain ACRYD_RS09140 PF08447 PAS fold ACRYD_RS09140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS09140 PF08448 PAS fold ACRYD_RS09145 PF02203 Tar ligand binding domain homologue ACRYD_RS09145 PF00672 HAMP domain ACRYD_RS09145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS09150 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACRYD_RS09165 PF00682 HMGL-like ACRYD_RS09165 PF02436 Conserved carboxylase domain ACRYD_RS09195 PF05690 Thiazole biosynthesis protein ThiG ACRYD_RS09200 PF03091 CutA1 divalent ion tolerance protein ACRYD_RS09205 PF03853 YjeF-related protein N-terminus ACRYD_RS09205 PF01256 Carbohydrate kinase ACRYD_RS09215 PF00814 Glycoprotease family ACRYD_RS09230 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACRYD_RS09230 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACRYD_RS09230 PF13288 DXP reductoisomerase C-terminal domain ACRYD_RS09260 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACRYD_RS09260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACRYD_RS09260 PF03129 Anticodon binding domain ACRYD_RS09265 PF00707 Translation initiation factor IF-3, C-terminal domain ACRYD_RS09265 PF05198 Translation initiation factor IF-3, N-terminal domain ACRYD_RS09270 PF01632 Ribosomal protein L35 ACRYD_RS09275 PF00453 Ribosomal protein L20 ACRYD_RS09285 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYD_RS09290 PF12804 MobA-like NTP transferase domain ACRYD_RS09295 PF00330 Aconitase family (aconitate hydratase) ACRYD_RS09300 PF03960 ArsC family ACRYD_RS09310 PF04303 PrpF protein ACRYD_RS09315 PF00330 Aconitase family (aconitate hydratase) ACRYD_RS09315 PF00694 Aconitase C-terminal domain ACRYD_RS09320 PF00285 Citrate synthase, C-terminal domain ACRYD_RS09335 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACRYD_RS09335 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACRYD_RS09340 PF01474 Class-II DAHP synthetase family ACRYD_RS09345 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACRYD_RS09360 PF03652 Holliday junction resolvase ACRYD_RS09365 PF03616 Sodium/glutamate symporter ACRYD_RS09385 PF01648 4'-phosphopantetheinyl transferase superfamily ACRYD_RS09390 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_RS09395 PF02569 Pantoate-beta-alanine ligase ACRYD_RS09405 PF04055 Radical SAM superfamily ACRYD_RS09405 PF00919 Uncharacterized protein family UPF0004 ACRYD_RS09405 PF18693 TRAM domain ACRYD_RS09410 PF01171 PP-loop family ACRYD_RS09425 PF03734 L,D-transpeptidase catalytic domain ACRYD_RS09425 PF17969 L,D-transpeptidase C-terminal domain ACRYD_RS09435 PF08274 PhnA Zinc-Ribbon ACRYD_RS09435 PF03831 PhnA domain ACRYD_RS09440 PF12849 PBP superfamily domain ACRYD_RS09445 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS09445 PF00563 EAL domain ACRYD_RS09445 PF03707 Bacterial signalling protein N terminal repeat ACRYD_RS09450 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_RS09455 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_RS09460 PF00005 ABC transporter ACRYD_RS09465 PF01895 PhoU domain ACRYD_RS09475 PF00072 Response regulator receiver domain ACRYD_RS09475 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS09480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS09480 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS09480 PF00989 PAS fold ACRYD_RS09480 PF16736 Single Cache-like ACRYD_RS09485 PF00572 Ribosomal protein L13 ACRYD_RS09490 PF00380 Ribosomal protein S9/S16 ACRYD_RS09495 PF03070 TENA/THI-4/PQQC family ACRYD_RS09500 PF02110 Hydroxyethylthiazole kinase family ACRYD_RS09505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACRYD_RS09510 PF13419 Haloacid dehalogenase-like hydrolase ACRYD_RS09530 PF09383 NIL domain ACRYD_RS09530 PF00005 ABC transporter ACRYD_RS09535 PF02405 Permease MlaE ACRYD_RS09540 PF02664 S-Ribosylhomocysteinase (LuxS) ACRYD_RS09545 PF01266 FAD dependent oxidoreductase ACRYD_RS09545 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ACRYD_RS09550 PF00768 D-alanyl-D-alanine carboxypeptidase ACRYD_RS09550 PF07943 Penicillin-binding protein 5, C-terminal domain ACRYD_RS09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS09560 PF13188 PAS domain ACRYD_RS09560 PF00512 His Kinase A (phospho-acceptor) domain ACRYD_RS09560 PF00989 PAS fold ACRYD_RS09560 PF13426 PAS domain ACRYD_RS09565 PF02310 B12 binding domain ACRYD_RS09565 PF02574 Homocysteine S-methyltransferase ACRYD_RS09565 PF00809 Pterin binding enzyme ACRYD_RS09565 PF02965 Vitamin B12 dependent methionine synthase, activation domain ACRYD_RS09565 PF02607 B12 binding domain ACRYD_RS09575 PF01063 Amino-transferase class IV ACRYD_RS09590 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ACRYD_RS09590 PF01502 Phosphoribosyl-AMP cyclohydrolase ACRYD_RS09600 PF01883 Iron-sulfur cluster assembly protein ACRYD_RS09600 PF10609 NUBPL iron-transfer P-loop NTPase ACRYD_RS09605 PF01964 Radical SAM ThiC family ACRYD_RS09615 PF02542 YgbB family ACRYD_RS09615 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACRYD_RS09625 PF04608 Phosphatidylglycerophosphatase A ACRYD_RS09630 PF00472 RF-1 domain ACRYD_RS09630 PF03462 PCRF domain ACRYD_RS09635 PF01649 Ribosomal protein S20 ACRYD_RS09640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACRYD_RS09640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACRYD_RS09640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACRYD_RS09640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACRYD_RS09645 PF01252 Signal peptidase (SPase) II ACRYD_RS09650 PF00202 Aminotransferase class-III ACRYD_RS09660 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACRYD_RS09660 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACRYD_RS09665 PF00425 chorismate binding enzyme ACRYD_RS09670 PF01063 Amino-transferase class IV ACRYD_RS09675 PF00117 Glutamine amidotransferase class-I ACRYD_RS09675 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACRYD_RS09685 PF00709 Adenylosuccinate synthetase ACRYD_RS09690 PF13393 Histidyl-tRNA synthetase ACRYD_RS09695 PF00266 Aminotransferase class-V ACRYD_RS09720 PF02678 Pirin ACRYD_RS09720 PF17954 Quercetinase C-terminal cupin domain ACRYD_RS09735 PF09962 Uncharacterized conserved protein (DUF2196) ACRYD_RS09740 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACRYD_RS09740 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACRYD_RS09745 PF00586 AIR synthase related protein, N-terminal domain ACRYD_RS09745 PF02769 AIR synthase related protein, C-terminal domain ACRYD_RS09750 PF17284 Spermidine synthase tetramerisation domain ACRYD_RS09755 PF01121 Dephospho-CoA kinase ACRYD_RS09765 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ACRYD_RS09765 PF12801 4Fe-4S binding domain ACRYD_RS09765 PF13746 4Fe-4S dicluster domain ACRYD_RS09770 PF00117 Glutamine amidotransferase class-I ACRYD_RS09770 PF06418 CTP synthase N-terminus ACRYD_RS09775 PF17768 RecJ OB domain ACRYD_RS09775 PF02272 DHHA1 domain ACRYD_RS09775 PF01368 DHH family ACRYD_RS09775 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ACRYD_RS09790 PF01965 DJ-1/PfpI family ACRYD_RS09795 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYD_RS09795 PF02811 PHP domain ACRYD_RS09795 PF14579 Helix-hairpin-helix motif ACRYD_RS09795 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYD_RS09800 PF01975 Survival protein SurE ACRYD_RS09815 PF01967 MoaC family ACRYD_RS09820 PF01165 Ribosomal protein S21 ACRYD_RS09825 PF02535 ZIP Zinc transporter ACRYD_RS09865 PF07669 Eco57I restriction-modification methylase ACRYD_RS09875 PF01040 UbiA prenyltransferase family ACRYD_RS09890 PF01197 Ribosomal protein L31 ACRYD_RS09895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACRYD_RS09900 PF00588 SpoU rRNA Methylase family ACRYD_RS09900 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACRYD_RS09910 PF00155 Aminotransferase class I and II ACRYD_RS09915 PF03447 Homoserine dehydrogenase, NAD binding domain ACRYD_RS09915 PF00742 Homoserine dehydrogenase ACRYD_RS09915 PF01842 ACT domain ACRYD_RS09920 PF00849 RNA pseudouridylate synthase ACRYD_RS09925 PF00206 Lyase ACRYD_RS09925 PF10397 Adenylosuccinate lyase C-terminus ACRYD_RS09930 PF03477 ATP cone domain ACRYD_RS09930 PF02867 Ribonucleotide reductase, barrel domain ACRYD_RS09930 PF00317 Ribonucleotide reductase, all-alpha domain ACRYD_RS09935 PF00268 Ribonucleotide reductase, small chain ACRYD_RS09950 PF00593 TonB dependent receptor ACRYD_RS09950 PF07715 TonB-dependent Receptor Plug Domain ACRYD_RS09960 PF08448 PAS fold ACRYD_RS09960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS09960 PF08447 PAS fold ACRYD_RS09965 PF00072 Response regulator receiver domain ACRYD_RS09965 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS09985 PF00107 Zinc-binding dehydrogenase ACRYD_RS09985 PF08240 Alcohol dehydrogenase GroES-like domain ACRYD_RS09990 PF01638 HxlR-like helix-turn-helix ACRYD_RS09995 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACRYD_RS09995 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACRYD_RS10000 PF02934 GatB/GatE catalytic domain ACRYD_RS10000 PF02637 GatB domain ACRYD_RS10010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACRYD_RS10010 PF01872 RibD C-terminal domain ACRYD_RS10015 PF00364 Biotin-requiring enzyme ACRYD_RS10020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACRYD_RS10020 PF02785 Biotin carboxylase C-terminal domain ACRYD_RS10020 PF00289 Biotin carboxylase, N-terminal domain ACRYD_RS10025 PF00270 DEAD/DEAH box helicase ACRYD_RS10025 PF00271 Helicase conserved C-terminal domain ACRYD_RS10030 PF00313 'Cold-shock' DNA-binding domain ACRYD_RS10040 PF01384 Phosphate transporter family ACRYD_RS10050 PF00733 Asparagine synthase ACRYD_RS10050 PF13537 Glutamine amidotransferase domain ACRYD_RS10065 PF13638 PIN domain ACRYD_RS10065 PF02562 PhoH-like protein ACRYD_RS10070 PF03653 Uncharacterised protein family (UPF0093) ACRYD_RS10075 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACRYD_RS10075 PF12002 MgsA AAA+ ATPase C terminal ACRYD_RS10075 PF01661 Macro domain ACRYD_RS10075 PF16193 AAA C-terminal domain ACRYD_RS10080 PF00849 RNA pseudouridylate synthase ACRYD_RS10080 PF01479 S4 domain ACRYD_RS10085 PF01380 SIS domain ACRYD_RS10085 PF00571 CBS domain ACRYD_RS10090 PF17770 Ribonuclease J C-terminal domain ACRYD_RS10090 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ACRYD_RS10090 PF00753 Metallo-beta-lactamase superfamily ACRYD_RS10095 PF00398 Ribosomal RNA adenine dimethylase ACRYD_RS10100 PF00977 Histidine biosynthesis protein ACRYD_RS10115 PF04055 Radical SAM superfamily ACRYD_RS10120 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACRYD_RS10125 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ACRYD_RS10130 PF00072 Response regulator receiver domain ACRYD_RS10130 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS10135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYD_RS10155 PF00873 AcrB/AcrD/AcrF family ACRYD_RS10160 PF04264 YceI-like domain ACRYD_RS10165 PF00291 Pyridoxal-phosphate dependent enzyme ACRYD_RS10180 PF00149 Calcineurin-like phosphoesterase ACRYD_RS10185 PF00011 Hsp20/alpha crystallin family ACRYD_RS10195 PF00005 ABC transporter ACRYD_RS10195 PF17850 CysA C-terminal regulatory domain ACRYD_RS10195 PF12857 TOBE-like domain ACRYD_RS10200 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_RS10205 PF00528 Binding-protein-dependent transport system inner membrane component ACRYD_RS10210 PF00672 HAMP domain ACRYD_RS10210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYD_RS10210 PF02203 Tar ligand binding domain homologue ACRYD_RS10215 PF08495 FIST N domain ACRYD_RS10215 PF10442 FIST C domain ACRYD_RS10215 PF00563 EAL domain ACRYD_RS10215 PF00990 Diguanylate cyclase, GGDEF domain ACRYD_RS10220 PF00899 ThiF family ACRYD_RS10220 PF00581 Rhodanese-like domain ACRYD_RS10235 PF02082 Transcriptional regulator ACRYD_RS10240 PF00679 Elongation factor G C-terminus ACRYD_RS10240 PF03144 Elongation factor Tu domain 2 ACRYD_RS10240 PF00009 Elongation factor Tu GTP binding domain ACRYD_RS10245 PF04143 Sulphur transport ACRYD_RS10250 PF01206 Sulfurtransferase TusA ACRYD_RS10255 PF08019 Phosphoethanolamine transferase EptA/EptB ACRYD_RS10255 PF00884 Sulfatase ACRYD_RS10265 PF01219 Prokaryotic diacylglycerol kinase ACRYD_RS10295 PF00486 Transcriptional regulatory protein, C terminal ACRYD_RS10295 PF00072 Response regulator receiver domain ACRYD_RS10305 PF11849 Domain of unknown function (DUF3369) ACRYD_RS10310 PF02511 Thymidylate synthase complementing protein ACRYD_RS10315 PF03458 UPF0126 domain ACRYD_RS10325 PF02911 Formyl transferase, C-terminal domain ACRYD_RS10325 PF00551 Formyl transferase ACRYD_RS10330 PF02075 Crossover junction endodeoxyribonuclease RuvC