locus-tag class description APAC_RS00005 PF11638 DnaA N-terminal domain APAC_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix APAC_RS00005 PF00308 Bacterial dnaA protein APAC_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain APAC_RS00010 PF02767 DNA polymerase III beta subunit, central domain APAC_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain APAC_RS00015 PF01751 Toprim domain APAC_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus APAC_RS00015 PF00204 DNA gyrase B APAC_RS00020 PF07992 Pyridine nucleotide-disulphide oxidoreductase APAC_RS00025 PF14489 QueF-like protein APAC_RS00050 PF00872 Transposase, Mutator family APAC_RS00080 PF00589 Phage integrase family APAC_RS00080 PF13356 Arm DNA-binding domain APAC_RS00090 PF09335 SNARE associated Golgi protein APAC_RS00100 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS00100 PF08448 PAS fold APAC_RS00100 PF00563 EAL domain APAC_RS00105 PF08402 TOBE domain APAC_RS00105 PF00005 ABC transporter APAC_RS00115 PF00528 Binding-protein-dependent transport system inner membrane component APAC_RS00130 PF03459 TOBE domain APAC_RS00130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APAC_RS00135 PF01925 Sulfite exporter TauE/SafE APAC_RS00140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS00140 PF13426 PAS domain APAC_RS00140 PF08447 PAS fold APAC_RS00145 PF03466 LysR substrate binding domain APAC_RS00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APAC_RS00155 PF18267 Rubredoxin NAD+ reductase C-terminal domain APAC_RS00155 PF07992 Pyridine nucleotide-disulphide oxidoreductase APAC_RS00155 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APAC_RS00155 PF04324 BFD-like [2Fe-2S] binding domain APAC_RS00170 PF13276 HTH-like domain APAC_RS00170 PF00665 Integrase core domain APAC_RS00170 PF13333 Integrase core domain APAC_RS00175 PF01527 Transposase APAC_RS00180 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APAC_RS00180 PF10518 TAT (twin-arginine translocation) pathway signal sequence APAC_RS00180 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal APAC_RS00185 PF00374 Nickel-dependent hydrogenase APAC_RS00190 PF00849 RNA pseudouridylate synthase APAC_RS00195 PF10397 Adenylosuccinate lyase C-terminus APAC_RS00195 PF00206 Lyase APAC_RS00200 PF02867 Ribonucleotide reductase, barrel domain APAC_RS00200 PF00317 Ribonucleotide reductase, all-alpha domain APAC_RS00200 PF03477 ATP cone domain APAC_RS00205 PF00268 Ribonucleotide reductase, small chain APAC_RS00210 PF00291 Pyridoxal-phosphate dependent enzyme APAC_RS00230 PF01389 OmpA-like transmembrane domain APAC_RS00230 PF00691 OmpA family APAC_RS00240 PF00107 Zinc-binding dehydrogenase APAC_RS00240 PF08240 Alcohol dehydrogenase GroES-like domain APAC_RS00245 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APAC_RS00245 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APAC_RS00250 PF02934 GatB/GatE catalytic domain APAC_RS00250 PF02637 GatB domain APAC_RS00255 PF09312 SurA N-terminal domain APAC_RS00255 PF00639 PPIC-type PPIASE domain APAC_RS00260 PF01565 FAD binding domain APAC_RS00260 PF02913 FAD linked oxidases, C-terminal domain APAC_RS00265 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APAC_RS00275 PF03480 Bacterial extracellular solute-binding protein, family 7 APAC_RS00280 PF00486 Transcriptional regulatory protein, C terminal APAC_RS00280 PF00072 Response regulator receiver domain APAC_RS00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS00285 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS00285 PF00989 PAS fold APAC_RS00285 PF08447 PAS fold APAC_RS00290 PF02589 LUD domain APAC_RS00295 PF11870 Domain of unknown function (DUF3390) APAC_RS00295 PF02589 LUD domain APAC_RS00295 PF13183 4Fe-4S dicluster domain APAC_RS00300 PF02754 Cysteine-rich domain APAC_RS00310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APAC_RS00315 PF00364 Biotin-requiring enzyme APAC_RS00320 PF02785 Biotin carboxylase C-terminal domain APAC_RS00320 PF00289 Biotin carboxylase, N-terminal domain APAC_RS00320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APAC_RS00325 PF00271 Helicase conserved C-terminal domain APAC_RS00325 PF00270 DEAD/DEAH box helicase APAC_RS00330 PF01384 Phosphate transporter family APAC_RS00340 PF00733 Asparagine synthase APAC_RS00340 PF13537 Glutamine amidotransferase domain APAC_RS00350 PF00881 Nitroreductase family APAC_RS00355 PF03480 Bacterial extracellular solute-binding protein, family 7 APAC_RS00365 PF13638 PIN domain APAC_RS00365 PF02562 PhoH-like protein APAC_RS00370 PF03653 Uncharacterised protein family (UPF0093) APAC_RS00375 PF12002 MgsA AAA+ ATPase C terminal APAC_RS00375 PF01661 Macro domain APAC_RS00375 PF16193 AAA C-terminal domain APAC_RS00375 PF05496 Holliday junction DNA helicase RuvB P-loop domain APAC_RS00380 PF00849 RNA pseudouridylate synthase APAC_RS00380 PF01479 S4 domain APAC_RS00385 PF00571 CBS domain APAC_RS00385 PF01380 SIS domain APAC_RS00390 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APAC_RS00390 PF00753 Metallo-beta-lactamase superfamily APAC_RS00390 PF17770 Ribonuclease J C-terminal domain APAC_RS00395 PF00398 Ribosomal RNA adenine dimethylase APAC_RS00400 PF00977 Histidine biosynthesis protein APAC_RS00415 PF04055 Radical SAM superfamily APAC_RS00420 PF00749 tRNA synthetases class I (E and Q), catalytic domain APAC_RS00425 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APAC_RS00430 PF00072 Response regulator receiver domain APAC_RS00430 PF00486 Transcriptional regulatory protein, C terminal APAC_RS00435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS00445 PF02371 Transposase IS116/IS110/IS902 family APAC_RS00445 PF01548 Transposase APAC_RS00460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APAC_RS00465 PF00873 AcrB/AcrD/AcrF family APAC_RS00470 PF04264 YceI-like domain APAC_RS00480 PF05114 Protein of unknown function (DUF692) APAC_RS00490 PF01554 MatE APAC_RS00495 PF01842 ACT domain APAC_RS00495 PF00742 Homoserine dehydrogenase APAC_RS00495 PF03447 Homoserine dehydrogenase, NAD binding domain APAC_RS00500 PF00155 Aminotransferase class I and II APAC_RS00510 PF08032 RNA 2'-O ribose methyltransferase substrate binding APAC_RS00510 PF00588 SpoU rRNA Methylase family APAC_RS00515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS00515 PF00672 HAMP domain APAC_RS00520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APAC_RS00525 PF01197 Ribosomal protein L31 APAC_RS00550 PF01040 UbiA prenyltransferase family APAC_RS00600 PF00437 Type II/IV secretion system protein APAC_RS00600 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APAC_RS00630 PF02222 ATP-grasp domain APAC_RS00635 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APAC_RS00640 PF01678 Diaminopimelate epimerase APAC_RS00645 PF01121 Dephospho-CoA kinase APAC_RS00650 PF17284 Spermidine synthase tetramerisation domain APAC_RS00655 PF02769 AIR synthase related protein, C-terminal domain APAC_RS00655 PF00586 AIR synthase related protein, N-terminal domain APAC_RS00660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APAC_RS00660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APAC_RS00665 PF17954 Quercetinase C-terminal cupin domain APAC_RS00665 PF02678 Pirin APAC_RS00670 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APAC_RS00675 PF04264 YceI-like domain APAC_RS00685 PF00266 Aminotransferase class-V APAC_RS00690 PF13393 Histidyl-tRNA synthetase APAC_RS00695 PF00709 Adenylosuccinate synthetase APAC_RS00705 PF00117 Glutamine amidotransferase class-I APAC_RS00705 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APAC_RS00710 PF04608 Phosphatidylglycerophosphatase A APAC_RS00715 PF00486 Transcriptional regulatory protein, C terminal APAC_RS00715 PF00072 Response regulator receiver domain APAC_RS00720 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APAC_RS00720 PF02542 YgbB family APAC_RS00735 PF01964 Radical SAM ThiC family APAC_RS00740 PF01883 Iron-sulfur cluster assembly protein APAC_RS00740 PF10609 NUBPL iron-transfer P-loop NTPase APAC_RS00750 PF01502 Phosphoribosyl-AMP cyclohydrolase APAC_RS00750 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APAC_RS00765 PF01063 Amino-transferase class IV APAC_RS00780 PF02310 B12 binding domain APAC_RS00780 PF02607 B12 binding domain APAC_RS00780 PF02965 Vitamin B12 dependent methionine synthase, activation domain APAC_RS00780 PF00809 Pterin binding enzyme APAC_RS00780 PF02574 Homocysteine S-methyltransferase APAC_RS00795 PF08447 PAS fold APAC_RS00795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS00795 PF08448 PAS fold APAC_RS00820 PF02664 S-Ribosylhomocysteinase (LuxS) APAC_RS00825 PF00072 Response regulator receiver domain APAC_RS00830 PF00857 Isochorismatase family APAC_RS00840 PF01219 Prokaryotic diacylglycerol kinase APAC_RS00850 PF00884 Sulfatase APAC_RS00850 PF08019 Phosphoethanolamine transferase EptA/EptB APAC_RS00855 PF05145 Transition state regulatory protein AbrB APAC_RS00860 PF00905 Penicillin binding protein transpeptidase domain APAC_RS00865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APAC_RS00870 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II APAC_RS00870 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg APAC_RS00880 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APAC_RS00885 PF13419 Haloacid dehalogenase-like hydrolase APAC_RS00890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APAC_RS00895 PF00380 Ribosomal protein S9/S16 APAC_RS00900 PF00572 Ribosomal protein L13 APAC_RS00905 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS00905 PF00989 PAS fold APAC_RS00905 PF11808 Phosphate regulon sensor protein PhoR APAC_RS00910 PF00486 Transcriptional regulatory protein, C terminal APAC_RS00910 PF00072 Response regulator receiver domain APAC_RS00925 PF00005 ABC transporter APAC_RS00930 PF00528 Binding-protein-dependent transport system inner membrane component APAC_RS00935 PF00528 Binding-protein-dependent transport system inner membrane component APAC_RS00940 PF00563 EAL domain APAC_RS00940 PF01590 GAF domain APAC_RS00940 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS00940 PF00989 PAS fold APAC_RS00955 PF03462 PCRF domain APAC_RS00955 PF00472 RF-1 domain APAC_RS00960 PF01649 Ribosomal protein S20 APAC_RS00965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APAC_RS00965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APAC_RS00965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APAC_RS00965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APAC_RS00970 PF01252 Signal peptidase (SPase) II APAC_RS00975 PF00330 Aconitase family (aconitate hydratase) APAC_RS00980 PF12804 MobA-like NTP transferase domain APAC_RS01005 PF00453 Ribosomal protein L20 APAC_RS01010 PF01632 Ribosomal protein L35 APAC_RS01015 PF00707 Translation initiation factor IF-3, C-terminal domain APAC_RS01015 PF05198 Translation initiation factor IF-3, N-terminal domain APAC_RS01020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APAC_RS01020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APAC_RS01020 PF03129 Anticodon binding domain APAC_RS01055 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APAC_RS01055 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APAC_RS01055 PF13288 DXP reductoisomerase C-terminal domain APAC_RS01075 PF00814 Glycoprotease family APAC_RS01080 PF01253 Translation initiation factor SUI1 APAC_RS01085 PF01256 Carbohydrate kinase APAC_RS01085 PF03853 YjeF-related protein N-terminus APAC_RS01095 PF05690 Thiazole biosynthesis protein ThiG APAC_RS01135 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APAC_RS01145 PF08463 EcoEI R protein C-terminal APAC_RS01145 PF00271 Helicase conserved C-terminal domain APAC_RS01145 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) APAC_RS01145 PF04851 Type III restriction enzyme, res subunit APAC_RS01160 PF09383 NIL domain APAC_RS01160 PF00005 ABC transporter APAC_RS01175 PF01258 Prokaryotic dksA/traR C4-type zinc finger APAC_RS01180 PF01142 tRNA pseudouridine synthase D (TruD) APAC_RS01195 PF13180 PDZ domain APAC_RS01195 PF03572 Peptidase family S41 APAC_RS01200 PF01259 SAICAR synthetase APAC_RS01205 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase APAC_RS01220 PF01553 Acyltransferase APAC_RS01225 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APAC_RS01230 PF02416 mttA/Hcf106 family APAC_RS01235 PF00750 tRNA synthetases class I (R) APAC_RS01235 PF05746 DALR anticodon binding domain APAC_RS01235 PF03485 Arginyl tRNA synthetase N terminal domain APAC_RS01245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APAC_RS01245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APAC_RS01250 PF00162 Phosphoglycerate kinase APAC_RS01255 PF00121 Triosephosphate isomerase APAC_RS01265 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APAC_RS01265 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APAC_RS01270 PF01842 ACT domain APAC_RS01270 PF01817 Chorismate mutase type II APAC_RS01270 PF00800 Prephenate dehydratase APAC_RS01275 PF00155 Aminotransferase class I and II APAC_RS01280 PF02779 Transketolase, pyrimidine binding domain APAC_RS01280 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APAC_RS01280 PF02780 Transketolase, C-terminal domain APAC_RS01285 PF00034 Cytochrome c APAC_RS01285 PF03150 Di-haem cytochrome c peroxidase APAC_RS01290 PF02545 Maf-like protein APAC_RS01310 PF00877 NlpC/P60 family APAC_RS01315 PF00877 NlpC/P60 family APAC_RS01330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APAC_RS01330 PF02272 DHHA1 domain APAC_RS01330 PF01411 tRNA synthetases class II (A) APAC_RS01335 PF00085 Thioredoxin APAC_RS01340 PF00085 Thioredoxin APAC_RS01345 PF00939 Sodium:sulfate symporter transmembrane region APAC_RS01350 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS01350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS01355 PF00486 Transcriptional regulatory protein, C terminal APAC_RS01355 PF00072 Response regulator receiver domain APAC_RS01360 PF07992 Pyridine nucleotide-disulphide oxidoreductase APAC_RS01365 PF05173 Dihydrodipicolinate reductase, C-terminus APAC_RS01365 PF01113 Dihydrodipicolinate reductase, N-terminus APAC_RS01370 PF13537 Glutamine amidotransferase domain APAC_RS01370 PF00156 Phosphoribosyl transferase domain APAC_RS01375 PF04055 Radical SAM superfamily APAC_RS01375 PF16199 Radical_SAM C-terminal domain APAC_RS01380 PF03466 LysR substrate binding domain APAC_RS01380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APAC_RS01385 PF00580 UvrD/REP helicase N-terminal domain APAC_RS01385 PF13361 UvrD-like helicase C-terminal domain APAC_RS01390 PF01509 TruB family pseudouridylate synthase (N terminal domain) APAC_RS01395 PF00288 GHMP kinases N terminal domain APAC_RS01400 PF01668 SmpB protein APAC_RS01405 PF00115 Cytochrome C and Quinol oxidase polypeptide I APAC_RS01420 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP APAC_RS01420 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APAC_RS01450 PF00472 RF-1 domain APAC_RS01450 PF03462 PCRF domain APAC_RS01475 PF02660 Glycerol-3-phosphate acyltransferase APAC_RS01480 PF02445 Quinolinate synthetase A protein APAC_RS01485 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APAC_RS01485 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APAC_RS01500 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APAC_RS01510 PF00288 GHMP kinases N terminal domain APAC_RS01510 PF08544 GHMP kinases C terminal APAC_RS01520 PF04760 Translation initiation factor IF-2, N-terminal region APAC_RS01520 PF11987 Translation-initiation factor 2 APAC_RS01520 PF00009 Elongation factor Tu GTP binding domain APAC_RS01525 PF02033 Ribosome-binding factor A APAC_RS01530 PF02576 RimP N-terminal domain APAC_RS01535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APAC_RS01535 PF01872 RibD C-terminal domain APAC_RS01540 PF09285 Elongation factor P, C-terminal APAC_RS01540 PF08207 Elongation factor P (EF-P) KOW-like domain APAC_RS01540 PF01132 Elongation factor P (EF-P) OB domain APAC_RS01545 PF01842 ACT domain APAC_RS01545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APAC_RS01545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APAC_RS01550 PF00575 S1 RNA binding domain APAC_RS01555 PF02401 LytB protein APAC_RS01560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APAC_RS01565 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APAC_RS01565 PF03484 tRNA synthetase B5 domain APAC_RS01565 PF03147 Ferredoxin-fold anticodon binding domain APAC_RS01565 PF01588 Putative tRNA binding domain APAC_RS01570 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APAC_RS01570 PF01409 tRNA synthetases class II core domain (F) APAC_RS01575 PF01230 HIT domain APAC_RS01580 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APAC_RS01585 PF00109 Beta-ketoacyl synthase, N-terminal domain APAC_RS01585 PF02801 Beta-ketoacyl synthase, C-terminal domain APAC_RS01590 PF00550 Phosphopantetheine attachment site APAC_RS01600 PF04055 Radical SAM superfamily APAC_RS01610 PF06508 Queuosine biosynthesis protein QueC APAC_RS01615 PF00994 Probable molybdopterin binding domain APAC_RS01615 PF03454 MoeA C-terminal region (domain IV) APAC_RS01615 PF03453 MoeA N-terminal region (domain I and II) APAC_RS01625 PF04452 RNA methyltransferase APAC_RS01640 PF00032 Cytochrome b(C-terminal)/b6/petD APAC_RS01640 PF00033 Cytochrome b/b6/petB APAC_RS01645 PF00355 Rieske [2Fe-2S] domain APAC_RS01645 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APAC_RS01650 PF00291 Pyridoxal-phosphate dependent enzyme APAC_RS01655 PF00696 Amino acid kinase family APAC_RS01660 PF13361 UvrD-like helicase C-terminal domain APAC_RS01660 PF12705 PD-(D/E)XK nuclease superfamily APAC_RS01660 PF00580 UvrD/REP helicase N-terminal domain APAC_RS01665 PF02581 Thiamine monophosphate synthase APAC_RS01670 PF00119 ATP synthase A chain APAC_RS01675 PF00291 Pyridoxal-phosphate dependent enzyme APAC_RS01675 PF13291 ACT domain APAC_RS01680 PF01717 Cobalamin-independent synthase, Catalytic domain APAC_RS01680 PF08267 Cobalamin-independent synthase, N-terminal domain APAC_RS01690 PF01746 tRNA (Guanine-1)-methyltransferase APAC_RS01695 PF01245 Ribosomal protein L19 APAC_RS01705 PF12821 Threonine/Serine exporter, ThrE APAC_RS01705 PF06738 Putative threonine/serine exporter APAC_RS01710 PF06738 Putative threonine/serine exporter APAC_RS01720 PF03309 Type III pantothenate kinase APAC_RS01725 PF01634 ATP phosphoribosyltransferase APAC_RS01735 PF02203 Tar ligand binding domain homologue APAC_RS01735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS01735 PF00672 HAMP domain APAC_RS01740 PF00579 tRNA synthetases class I (W and Y) APAC_RS01755 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APAC_RS01755 PF02403 Seryl-tRNA synthetase N-terminal domain APAC_RS01765 PF10414 Sirohaem synthase dimerisation region APAC_RS01765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APAC_RS01765 PF14824 Sirohaem biosynthesis protein central APAC_RS01770 PF10414 Sirohaem synthase dimerisation region APAC_RS01770 PF14824 Sirohaem biosynthesis protein central APAC_RS01770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APAC_RS01780 PF04055 Radical SAM superfamily APAC_RS01780 PF06463 Molybdenum Cofactor Synthesis C APAC_RS01785 PF00005 ABC transporter APAC_RS01790 PF00312 Ribosomal protein S15 APAC_RS01805 PF13380 CoA binding domain APAC_RS01810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS01810 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS01810 PF00672 HAMP domain APAC_RS01815 PF00486 Transcriptional regulatory protein, C terminal APAC_RS01815 PF00072 Response regulator receiver domain APAC_RS01820 PF00639 PPIC-type PPIASE domain APAC_RS01825 PF01116 Fructose-bisphosphate aldolase class-II APAC_RS01830 PF00883 Cytosol aminopeptidase family, catalytic domain APAC_RS01830 PF02789 Cytosol aminopeptidase family, N-terminal domain APAC_RS01845 PF01527 Transposase APAC_RS01850 PF13333 Integrase core domain APAC_RS01850 PF00665 Integrase core domain APAC_RS01850 PF13276 HTH-like domain APAC_RS01855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS01855 PF00672 HAMP domain APAC_RS01855 PF02203 Tar ligand binding domain homologue APAC_RS01870 PF00497 Bacterial extracellular solute-binding proteins, family 3 APAC_RS01875 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APAC_RS01885 PF00528 Binding-protein-dependent transport system inner membrane component APAC_RS01890 PF00005 ABC transporter APAC_RS01900 PF02203 Tar ligand binding domain homologue APAC_RS01900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS01900 PF00672 HAMP domain APAC_RS01905 PF01638 HxlR-like helix-turn-helix APAC_RS01910 PF08240 Alcohol dehydrogenase GroES-like domain APAC_RS01910 PF00107 Zinc-binding dehydrogenase APAC_RS01935 PF01011 PQQ enzyme repeat APAC_RS01935 PF13360 PQQ-like domain APAC_RS01945 PF08042 PqqA family APAC_RS01950 PF00005 ABC transporter APAC_RS01960 PF13360 PQQ-like domain APAC_RS01960 PF01011 PQQ enzyme repeat APAC_RS01970 PF12706 Beta-lactamase superfamily domain APAC_RS01975 PF03070 TENA/THI-4/PQQC family APAC_RS01980 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APAC_RS01985 PF04055 Radical SAM superfamily APAC_RS01985 PF13186 Iron-sulfur cluster-binding domain APAC_RS01995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APAC_RS01995 PF00289 Biotin carboxylase, N-terminal domain APAC_RS01995 PF02785 Biotin carboxylase C-terminal domain APAC_RS02000 PF12833 Helix-turn-helix domain APAC_RS02010 PF00486 Transcriptional regulatory protein, C terminal APAC_RS02010 PF00072 Response regulator receiver domain APAC_RS02015 PF13493 Domain of unknown function (DUF4118) APAC_RS02015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS02015 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS02015 PF02702 Osmosensitive K+ channel His kinase sensor domain APAC_RS02020 PF00171 Aldehyde dehydrogenase family APAC_RS02030 PF02472 Biopolymer transport protein ExbD/TolR APAC_RS02035 PF01618 MotA/TolQ/ExbB proton channel family APAC_RS02045 PF03707 Bacterial signalling protein N terminal repeat APAC_RS02045 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS02045 PF00563 EAL domain APAC_RS02050 PF01202 Shikimate kinase APAC_RS02055 PF00815 Histidinol dehydrogenase APAC_RS02065 PF00348 Polyprenyl synthetase APAC_RS02070 PF01488 Shikimate / quinate 5-dehydrogenase APAC_RS02070 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APAC_RS02070 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APAC_RS02075 PF03129 Anticodon binding domain APAC_RS02075 PF04073 Aminoacyl-tRNA editing domain APAC_RS02075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APAC_RS02080 PF00924 Mechanosensitive ion channel APAC_RS02080 PF05552 Conserved TM helix APAC_RS02085 PF12627 Probable RNA and SrmB- binding site of polymerase A APAC_RS02085 PF01966 HD domain APAC_RS02085 PF01743 Poly A polymerase head domain APAC_RS02105 PF02699 Preprotein translocase subunit APAC_RS02110 PF02355 Protein export membrane protein APAC_RS02115 PF02355 Protein export membrane protein APAC_RS02115 PF07549 SecD/SecF GG Motif APAC_RS02135 PF09334 tRNA synthetases class I (M) APAC_RS02135 PF13603 Leucyl-tRNA synthetase, Domain 2 APAC_RS02135 PF00133 tRNA synthetases class I (I, L, M and V) APAC_RS02145 PF08245 Mur ligase middle domain APAC_RS02150 PF01551 Peptidase family M23 APAC_RS02165 PF02254 TrkA-N domain APAC_RS02165 PF00999 Sodium/hydrogen exchanger family APAC_RS02180 PF02371 Transposase IS116/IS110/IS902 family APAC_RS02180 PF01548 Transposase APAC_RS02190 PF03824 High-affinity nickel-transport protein APAC_RS02205 PF02872 5'-nucleotidase, C-terminal domain APAC_RS02205 PF00149 Calcineurin-like phosphoesterase APAC_RS02235 PF00183 Hsp90 protein APAC_RS02260 PF00270 DEAD/DEAH box helicase APAC_RS02260 PF03461 TRCF domain APAC_RS02260 PF02559 CarD-like/TRCF domain APAC_RS02260 PF00271 Helicase conserved C-terminal domain APAC_RS02260 PF17757 UvrB interaction domain APAC_RS02265 PF00563 EAL domain APAC_RS02265 PF01590 GAF domain APAC_RS02265 PF00360 Phytochrome region APAC_RS02265 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS02270 PF07813 LTXXQ motif family protein APAC_RS02275 PF00072 Response regulator receiver domain APAC_RS02275 PF00486 Transcriptional regulatory protein, C terminal APAC_RS02305 PF00672 HAMP domain APAC_RS02305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS02305 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS02310 PF13277 YmdB-like protein APAC_RS02330 PF01209 ubiE/COQ5 methyltransferase family APAC_RS02335 PF13742 OB-fold nucleic acid binding domain APAC_RS02335 PF02601 Exonuclease VII, large subunit APAC_RS02340 PF01584 CheW-like domain APAC_RS02345 PF00072 Response regulator receiver domain APAC_RS02350 PF00158 Sigma-54 interaction domain APAC_RS02350 PF00072 Response regulator receiver domain APAC_RS02350 PF02954 Bacterial regulatory protein, Fis family APAC_RS02355 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APAC_RS02360 PF02261 Aspartate decarboxylase APAC_RS02365 PF02575 YbaB/EbfC DNA-binding family APAC_RS02370 PF00348 Polyprenyl synthetase APAC_RS02375 PF00166 Chaperonin 10 Kd subunit APAC_RS02380 PF00118 TCP-1/cpn60 chaperonin family APAC_RS02385 PF00893 Small Multidrug Resistance protein APAC_RS02390 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS02390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS02390 PF00672 HAMP domain APAC_RS02395 PF00072 Response regulator receiver domain APAC_RS02395 PF00486 Transcriptional regulatory protein, C terminal APAC_RS02400 PF00149 Calcineurin-like phosphoesterase APAC_RS02420 PF00005 ABC transporter APAC_RS02425 PF02687 FtsX-like permease family APAC_RS02425 PF12704 MacB-like periplasmic core domain APAC_RS02425 PF00005 ABC transporter APAC_RS02430 PF00459 Inositol monophosphatase family APAC_RS02435 PF01380 SIS domain APAC_RS02440 PF00438 S-adenosylmethionine synthetase, N-terminal domain APAC_RS02440 PF02772 S-adenosylmethionine synthetase, central domain APAC_RS02440 PF02773 S-adenosylmethionine synthetase, C-terminal domain APAC_RS02445 PF17848 Acetyl-coA carboxylase zinc finger domain APAC_RS02445 PF01039 Carboxyl transferase domain APAC_RS02450 PF02581 Thiamine monophosphate synthase APAC_RS02455 PF02590 Predicted SPOUT methyltransferase APAC_RS02460 PF01258 Prokaryotic dksA/traR C4-type zinc finger APAC_RS02470 PF01207 Dihydrouridine synthase (Dus) APAC_RS02480 PF17862 AAA+ lid domain APAC_RS02480 PF01434 Peptidase family M41 APAC_RS02480 PF00004 ATPase family associated with various cellular activities (AAA) APAC_RS02505 PF08447 PAS fold APAC_RS02505 PF08448 PAS fold APAC_RS02505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS02510 PF11849 Domain of unknown function (DUF3369) APAC_RS02515 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS02515 PF17158 Membrane-associated sensor, integral membrane domain APAC_RS02520 PF00682 HMGL-like APAC_RS02520 PF08502 LeuA allosteric (dimerisation) domain APAC_RS02525 PF07556 Protein of unknown function (DUF1538) APAC_RS02540 PF05190 MutS family domain IV APAC_RS02540 PF00488 MutS domain V APAC_RS02540 PF05192 MutS domain III APAC_RS02540 PF05188 MutS domain II APAC_RS02540 PF01624 MutS domain I APAC_RS02545 PF01595 Cyclin M transmembrane N-terminal domain APAC_RS02545 PF00571 CBS domain APAC_RS02550 PF07694 5TMR of 5TMR-LYT APAC_RS02550 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS02555 PF00977 Histidine biosynthesis protein APAC_RS02560 PF08338 Domain of unknown function (DUF1731) APAC_RS02560 PF01370 NAD dependent epimerase/dehydratase family APAC_RS02565 PF00117 Glutamine amidotransferase class-I APAC_RS02575 PF00009 Elongation factor Tu GTP binding domain APAC_RS02575 PF06421 GTP-binding protein LepA C-terminus APAC_RS02575 PF03144 Elongation factor Tu domain 2 APAC_RS02575 PF00679 Elongation factor G C-terminus APAC_RS02580 PF00691 OmpA family APAC_RS02580 PF05736 OprF membrane domain APAC_RS02585 PF05736 OprF membrane domain APAC_RS02585 PF00691 OmpA family APAC_RS02590 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APAC_RS02590 PF14572 Phosphoribosyl synthetase-associated domain APAC_RS02605 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APAC_RS02610 PF01321 Creatinase/Prolidase N-terminal domain APAC_RS02610 PF00557 Metallopeptidase family M24 APAC_RS02615 PF01220 Dehydroquinase class II APAC_RS02620 PF01979 Amidohydrolase family APAC_RS02625 PF01343 Peptidase family S49 APAC_RS02630 PF00871 Acetokinase family APAC_RS02635 PF01515 Phosphate acetyl/butaryl transferase APAC_RS02640 PF00929 Exonuclease APAC_RS02650 PF00474 Sodium:solute symporter family APAC_RS02660 PF00474 Sodium:solute symporter family APAC_RS02670 PF00929 Exonuclease APAC_RS02670 PF02811 PHP domain APAC_RS02670 PF14579 Helix-hairpin-helix motif APAC_RS02670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APAC_RS02670 PF11490 DNA polymerase III polC-type N-terminus II APAC_RS02670 PF07733 Bacterial DNA polymerase III alpha NTPase domain APAC_RS02680 PF00474 Sodium:solute symporter family APAC_RS02690 PF00486 Transcriptional regulatory protein, C terminal APAC_RS02690 PF00072 Response regulator receiver domain APAC_RS02695 PF08269 Cache domain APAC_RS02695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS02740 PF00994 Probable molybdopterin binding domain APAC_RS02740 PF02464 Competence-damaged protein APAC_RS02740 PF18146 Damage-inducible protein CinA KH domain APAC_RS02745 PF06039 Malate:quinone oxidoreductase (Mqo) APAC_RS02750 PF08264 Anticodon-binding domain of tRNA APAC_RS02750 PF00133 tRNA synthetases class I (I, L, M and V) APAC_RS02765 PF02875 Mur ligase family, glutamate ligase domain APAC_RS02765 PF08245 Mur ligase middle domain APAC_RS02790 PF01882 Protein of unknown function DUF58 APAC_RS02795 PF07726 ATPase family associated with various cellular activities (AAA) APAC_RS02795 PF17863 AAA lid domain APAC_RS02800 PF00318 Ribosomal protein S2 APAC_RS02805 PF00889 Elongation factor TS APAC_RS02810 PF00005 ABC transporter APAC_RS02820 PF00625 Guanylate kinase APAC_RS02825 PF00563 EAL domain APAC_RS02825 PF08448 PAS fold APAC_RS02825 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS02830 PF00403 Heavy-metal-associated domain APAC_RS02845 PF08447 PAS fold APAC_RS02845 PF00989 PAS fold APAC_RS02845 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS02845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS02850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APAC_RS02850 PF00005 ABC transporter APAC_RS02855 PF00762 Ferrochelatase APAC_RS02865 PF01875 Memo-like protein APAC_RS02875 PF00005 ABC transporter APAC_RS02880 PF00950 ABC 3 transport family APAC_RS02915 PF17783 CvfB-like winged helix domain APAC_RS02915 PF13509 S1 domain APAC_RS02920 PF08534 Redoxin APAC_RS02925 PF00174 Oxidoreductase molybdopterin binding domain APAC_RS02930 PF01794 Ferric reductase like transmembrane component APAC_RS02935 PF00580 UvrD/REP helicase N-terminal domain APAC_RS02935 PF13361 UvrD-like helicase C-terminal domain APAC_RS02940 PF00174 Oxidoreductase molybdopterin binding domain APAC_RS03010 PF16123 Hydroxyacylglutathione hydrolase C-terminus APAC_RS03010 PF00753 Metallo-beta-lactamase superfamily APAC_RS03025 PF08264 Anticodon-binding domain of tRNA APAC_RS03025 PF00133 tRNA synthetases class I (I, L, M and V) APAC_RS03025 PF10458 Valyl tRNA synthetase tRNA binding arm APAC_RS03035 PF00873 AcrB/AcrD/AcrF family APAC_RS03050 PF07690 Major Facilitator Superfamily APAC_RS03055 PF01725 Ham1 family APAC_RS03080 PF13525 Outer membrane lipoprotein APAC_RS03085 PF00004 ATPase family associated with various cellular activities (AAA) APAC_RS03085 PF05362 Lon protease (S16) C-terminal proteolytic domain APAC_RS03085 PF02190 ATP-dependent protease La (LON) substrate-binding domain APAC_RS03115 PF00072 Response regulator receiver domain APAC_RS03115 PF09308 LuxQ, periplasmic APAC_RS03115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS03115 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS03120 PF11798 IMS family HHH motif APAC_RS03120 PF11799 impB/mucB/samB family C-terminal domain APAC_RS03120 PF00817 impB/mucB/samB family APAC_RS03130 PF02253 Phospholipase A1 APAC_RS03145 PF00924 Mechanosensitive ion channel APAC_RS03155 PF00137 ATP synthase subunit C APAC_RS03195 PF03150 Di-haem cytochrome c peroxidase APAC_RS03210 PF00672 HAMP domain APAC_RS03210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS03210 PF02203 Tar ligand binding domain homologue APAC_RS03230 PF00873 AcrB/AcrD/AcrF family APAC_RS03235 PF00375 Sodium:dicarboxylate symporter family APAC_RS03240 PF01734 Patatin-like phospholipase APAC_RS03245 PF06965 Na+/H+ antiporter 1 APAC_RS03260 PF03824 High-affinity nickel-transport protein APAC_RS03270 PF01053 Cys/Met metabolism PLP-dependent enzyme APAC_RS03275 PF01053 Cys/Met metabolism PLP-dependent enzyme APAC_RS03285 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APAC_RS03290 PF00578 AhpC/TSA family APAC_RS03290 PF10417 C-terminal domain of 1-Cys peroxiredoxin APAC_RS03295 PF17932 Tetracyclin repressor-like, C-terminal domain APAC_RS03295 PF00440 Bacterial regulatory proteins, tetR family APAC_RS03305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APAC_RS03310 PF00873 AcrB/AcrD/AcrF family APAC_RS03330 PF02371 Transposase IS116/IS110/IS902 family APAC_RS03330 PF01548 Transposase APAC_RS03335 PF03737 Aldolase/RraA APAC_RS03340 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS03340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS03340 PF00989 PAS fold APAC_RS03345 PF06965 Na+/H+ antiporter 1 APAC_RS03350 PF00072 Response regulator receiver domain APAC_RS03350 PF00486 Transcriptional regulatory protein, C terminal APAC_RS03370 PF03448 MgtE intracellular N domain APAC_RS03370 PF00571 CBS domain APAC_RS03370 PF01769 Divalent cation transporter APAC_RS03375 PF00892 EamA-like transporter family APAC_RS03380 PF00563 EAL domain APAC_RS03380 PF05231 MASE1 APAC_RS03385 PF01883 Iron-sulfur cluster assembly protein APAC_RS03390 PF02657 Fe-S metabolism associated domain APAC_RS03395 PF00266 Aminotransferase class-V APAC_RS03400 PF01458 Uncharacterized protein family (UPF0051) APAC_RS03405 PF00005 ABC transporter APAC_RS03410 PF01458 Uncharacterized protein family (UPF0051) APAC_RS03415 PF00266 Aminotransferase class-V APAC_RS03420 PF01106 NifU-like domain APAC_RS03420 PF01592 NifU-like N terminal domain APAC_RS03420 PF04324 BFD-like [2Fe-2S] binding domain APAC_RS03430 PF17158 Membrane-associated sensor, integral membrane domain APAC_RS03430 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS03450 PF00206 Lyase APAC_RS03450 PF14698 Argininosuccinate lyase C-terminal APAC_RS03455 PF01584 CheW-like domain APAC_RS03455 PF00072 Response regulator receiver domain APAC_RS03460 PF00899 ThiF family APAC_RS03465 PF03449 Transcription elongation factor, N-terminal APAC_RS03465 PF01272 Transcription elongation factor, GreA/GreB, C-term APAC_RS03470 PF02774 Semialdehyde dehydrogenase, dimerisation domain APAC_RS03470 PF01118 Semialdehyde dehydrogenase, NAD binding domain APAC_RS03485 PF05973 Phage derived protein Gp49-like (DUF891) APAC_RS03490 PF01381 Helix-turn-helix APAC_RS03495 PF12344 Ultra-violet resistance protein B APAC_RS03495 PF02151 UvrB/uvrC motif APAC_RS03495 PF00271 Helicase conserved C-terminal domain APAC_RS03495 PF17757 UvrB interaction domain APAC_RS03495 PF04851 Type III restriction enzyme, res subunit APAC_RS03500 PF00271 Helicase conserved C-terminal domain APAC_RS03500 PF04851 Type III restriction enzyme, res subunit APAC_RS03500 PF02151 UvrB/uvrC motif APAC_RS03500 PF17757 UvrB interaction domain APAC_RS03500 PF12344 Ultra-violet resistance protein B APAC_RS03515 PF10576 Iron-sulfur binding domain of endonuclease III APAC_RS03515 PF00633 Helix-hairpin-helix motif APAC_RS03515 PF00730 HhH-GPD superfamily base excision DNA repair protein APAC_RS03540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APAC_RS03540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APAC_RS03540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APAC_RS03545 PF01050 Mannose-6-phosphate isomerase APAC_RS03545 PF00483 Nucleotidyl transferase APAC_RS03550 PF02350 UDP-N-acetylglucosamine 2-epimerase APAC_RS03555 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APAC_RS03555 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APAC_RS03555 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APAC_RS03585 PF00534 Glycosyl transferases group 1 APAC_RS03585 PF13439 Glycosyltransferase Family 4 APAC_RS03590 PF03808 Glycosyl transferase WecB/TagA/CpsF family APAC_RS03595 PF00953 Glycosyl transferase family 4 APAC_RS03610 PF06082 Exopolysaccharide biosynthesis protein YbjH APAC_RS03630 PF13657 HipA N-terminal domain APAC_RS03630 PF07804 HipA-like C-terminal domain APAC_RS03655 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system APAC_RS03675 PF02502 Ribose/Galactose Isomerase APAC_RS03680 PF10502 Signal peptidase, peptidase S26 APAC_RS03685 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APAC_RS03685 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APAC_RS03690 PF14693 Ribosomal protein TL5, C-terminal domain APAC_RS03690 PF01386 Ribosomal L25p family APAC_RS03695 PF01195 Peptidyl-tRNA hydrolase APAC_RS03710 PF01520 N-acetylmuramoyl-L-alanine amidase APAC_RS03720 PF00579 tRNA synthetases class I (W and Y) APAC_RS03720 PF01479 S4 domain APAC_RS03725 PF13291 ACT domain APAC_RS03725 PF04607 Region found in RelA / SpoT proteins APAC_RS03725 PF02824 TGS domain APAC_RS03730 PF01192 RNA polymerase Rpb6 APAC_RS03735 PF00696 Amino acid kinase family APAC_RS03745 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APAC_RS03750 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APAC_RS03755 PF00425 chorismate binding enzyme APAC_RS03755 PF04715 Anthranilate synthase component I, N terminal region APAC_RS03765 PF00464 Serine hydroxymethyltransferase APAC_RS03770 PF01336 OB-fold nucleic acid binding domain APAC_RS03770 PF00152 tRNA synthetases class II (D, K and N) APAC_RS03780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS03780 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS03780 PF00989 PAS fold APAC_RS03780 PF08447 PAS fold APAC_RS03785 PF04551 GcpE protein APAC_RS03790 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS03795 PF00772 DnaB-like helicase N terminal domain APAC_RS03795 PF03796 DnaB-like helicase C terminal domain APAC_RS03800 PF07963 Prokaryotic N-terminal methylation motif APAC_RS03800 PF08334 Type II secretion system (T2SS), protein G APAC_RS03805 PF01068 ATP dependent DNA ligase domain APAC_RS03805 PF14743 DNA ligase OB-like domain APAC_RS03810 PF00156 Phosphoribosyl transferase domain APAC_RS03815 PF00291 Pyridoxal-phosphate dependent enzyme APAC_RS03825 PF00883 Cytosol aminopeptidase family, catalytic domain APAC_RS03825 PF02789 Cytosol aminopeptidase family, N-terminal domain APAC_RS03845 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APAC_RS03845 PF00672 HAMP domain APAC_RS03845 PF00072 Response regulator receiver domain APAC_RS03845 PF01627 Hpt domain APAC_RS03845 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS03845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS03850 PF06071 Protein of unknown function (DUF933) APAC_RS03850 PF01926 50S ribosome-binding GTPase APAC_RS03870 PF06865 Pyrimidine/purine nucleoside phosphorylase APAC_RS03880 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS03890 PF02769 AIR synthase related protein, C-terminal domain APAC_RS03890 PF00586 AIR synthase related protein, N-terminal domain APAC_RS03895 PF01142 tRNA pseudouridine synthase D (TruD) APAC_RS03910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS03910 PF02203 Tar ligand binding domain homologue APAC_RS03910 PF00672 HAMP domain APAC_RS03915 PF01330 RuvA N terminal domain APAC_RS03915 PF07499 RuvA, C-terminal domain APAC_RS03920 PF07478 D-ala D-ala ligase C-terminus APAC_RS03920 PF01820 D-ala D-ala ligase N-terminus APAC_RS03930 PF02875 Mur ligase family, glutamate ligase domain APAC_RS03930 PF08245 Mur ligase middle domain APAC_RS03930 PF01225 Mur ligase family, catalytic domain APAC_RS03940 PF01266 FAD dependent oxidoreductase APAC_RS03950 PF00338 Ribosomal protein S10p/S20e APAC_RS03955 PF00297 Ribosomal protein L3 APAC_RS03960 PF00573 Ribosomal protein L4/L1 family APAC_RS03965 PF00276 Ribosomal protein L23 APAC_RS03970 PF00181 Ribosomal Proteins L2, RNA binding domain APAC_RS03970 PF03947 Ribosomal Proteins L2, C-terminal domain APAC_RS03975 PF00203 Ribosomal protein S19 APAC_RS03980 PF00237 Ribosomal protein L22p/L17e APAC_RS03985 PF07650 KH domain APAC_RS03985 PF00189 Ribosomal protein S3, C-terminal domain APAC_RS03990 PF00252 Ribosomal protein L16p/L10e APAC_RS03995 PF00831 Ribosomal L29 protein APAC_RS04000 PF00366 Ribosomal protein S17 APAC_RS04005 PF00238 Ribosomal protein L14p/L23e APAC_RS04010 PF00467 KOW motif APAC_RS04010 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APAC_RS04015 PF00281 Ribosomal protein L5 APAC_RS04015 PF00673 ribosomal L5P family C-terminus APAC_RS04020 PF00253 Ribosomal protein S14p/S29e APAC_RS04025 PF00410 Ribosomal protein S8 APAC_RS04030 PF00347 Ribosomal protein L6 APAC_RS04035 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APAC_RS04040 PF00333 Ribosomal protein S5, N-terminal domain APAC_RS04040 PF03719 Ribosomal protein S5, C-terminal domain APAC_RS04045 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APAC_RS04050 PF00344 SecY translocase APAC_RS04055 PF00557 Metallopeptidase family M24 APAC_RS04060 PF01176 Translation initiation factor 1A / IF-1 APAC_RS04070 PF03167 Uracil DNA glycosylase superfamily APAC_RS04080 PF00152 tRNA synthetases class II (D, K and N) APAC_RS04080 PF02938 GAD domain APAC_RS04080 PF01336 OB-fold nucleic acid binding domain APAC_RS04105 PF04055 Radical SAM superfamily APAC_RS04105 PF08497 Radical SAM N-terminal APAC_RS04130 PF00842 Alanine racemase, C-terminal domain APAC_RS04130 PF01168 Alanine racemase, N-terminal domain APAC_RS04135 PF08459 UvrC Helix-hairpin-helix N-terminal APAC_RS04135 PF02151 UvrB/uvrC motif APAC_RS04135 PF01541 GIY-YIG catalytic domain APAC_RS04145 PF00255 Glutathione peroxidase APAC_RS04155 PF13840 ACT domain APAC_RS04155 PF00696 Amino acid kinase family APAC_RS04160 PF00486 Transcriptional regulatory protein, C terminal APAC_RS04160 PF00072 Response regulator receiver domain APAC_RS04165 PF06339 Ectoine synthase APAC_RS04170 PF00202 Aminotransferase class-III APAC_RS04175 PF00583 Acetyltransferase (GNAT) family APAC_RS04180 PF00005 ABC transporter APAC_RS04180 PF00571 CBS domain APAC_RS04185 PF00528 Binding-protein-dependent transport system inner membrane component APAC_RS04200 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APAC_RS04220 PF01556 DnaJ C terminal domain APAC_RS04220 PF00684 DnaJ central domain APAC_RS04220 PF00226 DnaJ domain APAC_RS04225 PF02652 L-lactate permease APAC_RS04230 PF00226 DnaJ domain APAC_RS04230 PF00684 DnaJ central domain APAC_RS04230 PF01556 DnaJ C terminal domain APAC_RS04250 PF01915 Glycosyl hydrolase family 3 C-terminal domain APAC_RS04250 PF00933 Glycosyl hydrolase family 3 N terminal domain APAC_RS04260 PF07992 Pyridine nucleotide-disulphide oxidoreductase APAC_RS04260 PF10518 TAT (twin-arginine translocation) pathway signal sequence APAC_RS04260 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding APAC_RS04265 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS04265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS04265 PF00072 Response regulator receiver domain APAC_RS04265 PF09308 LuxQ, periplasmic APAC_RS04270 PF00486 Transcriptional regulatory protein, C terminal APAC_RS04270 PF00072 Response regulator receiver domain APAC_RS04275 PF00072 Response regulator receiver domain APAC_RS04280 PF09308 LuxQ, periplasmic APAC_RS04280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS04280 PF00072 Response regulator receiver domain APAC_RS04280 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS04295 PF01022 Bacterial regulatory protein, arsR family APAC_RS04300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS04300 PF08447 PAS fold APAC_RS04305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS04305 PF00672 HAMP domain APAC_RS04305 PF02203 Tar ligand binding domain homologue APAC_RS04350 PF02653 Branched-chain amino acid transport system / permease component APAC_RS04360 PF12399 Branched-chain amino acid ATP-binding cassette transporter APAC_RS04360 PF00005 ABC transporter APAC_RS04365 PF00005 ABC transporter APAC_RS04375 PF05016 ParE toxin of type II toxin-antitoxin system, parDE APAC_RS04385 PF01774 UreD urease accessory protein APAC_RS04390 PF00699 Urease beta subunit APAC_RS04390 PF00547 Urease, gamma subunit APAC_RS04395 PF00449 Urease alpha-subunit, N-terminal domain APAC_RS04395 PF01979 Amidohydrolase family APAC_RS04400 PF05194 UreE urease accessory protein, C-terminal domain APAC_RS04410 PF02492 CobW/HypB/UreG, nucleotide-binding domain APAC_RS04415 PF08448 PAS fold APAC_RS04415 PF08447 PAS fold APAC_RS04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS04430 PF03372 Endonuclease/Exonuclease/phosphatase family APAC_RS04450 PF00583 Acetyltransferase (GNAT) family APAC_RS04455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS04455 PF08448 PAS fold APAC_RS04455 PF08447 PAS fold APAC_RS04460 PF00072 Response regulator receiver domain APAC_RS04460 PF00486 Transcriptional regulatory protein, C terminal APAC_RS04485 PF01235 Sodium:alanine symporter family APAC_RS04490 PF02743 Cache domain APAC_RS04490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS04490 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS04495 PF00072 Response regulator receiver domain APAC_RS04495 PF00196 Bacterial regulatory proteins, luxR family APAC_RS04500 PF00206 Lyase APAC_RS04500 PF10415 Fumarase C C-terminus APAC_RS04510 PF00210 Ferritin-like domain APAC_RS04515 PF01368 DHH family APAC_RS04515 PF02833 DHHA2 domain APAC_RS04520 PF08448 PAS fold APAC_RS04520 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS04530 PF00491 Arginase family APAC_RS04535 PF04073 Aminoacyl-tRNA editing domain APAC_RS04540 PF05088 Bacterial NAD-glutamate dehydrogenase APAC_RS04560 PF04403 Paraquat-inducible protein A APAC_RS04565 PF04403 Paraquat-inducible protein A APAC_RS04570 PF02470 MlaD protein APAC_RS04580 PF12282 Signal transduction histidine kinase APAC_RS04580 PF07568 Histidine kinase APAC_RS04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS04585 PF00196 Bacterial regulatory proteins, luxR family APAC_RS04585 PF00072 Response regulator receiver domain APAC_RS04645 PF18273 Type III R-M EcoP15I C-terminal domain APAC_RS04645 PF01555 DNA methylase APAC_RS04655 PF00183 Hsp90 protein APAC_RS04675 PF03746 LamB/YcsF family APAC_RS04685 PF02626 Carboxyltransferase domain, subdomain A and B APAC_RS04695 PF08495 FIST N domain APAC_RS04695 PF10442 FIST C domain APAC_RS04695 PF00563 EAL domain APAC_RS04695 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS04710 PF00563 EAL domain APAC_RS04710 PF03707 Bacterial signalling protein N terminal repeat APAC_RS04710 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS04725 PF01243 Pyridoxamine 5'-phosphate oxidase APAC_RS04725 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APAC_RS04730 PF01966 HD domain APAC_RS04740 PF00563 EAL domain APAC_RS04740 PF08495 FIST N domain APAC_RS04740 PF10442 FIST C domain APAC_RS04740 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS04750 PF08447 PAS fold APAC_RS04750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS04750 PF08448 PAS fold APAC_RS04775 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APAC_RS04775 PF00072 Response regulator receiver domain APAC_RS04775 PF01627 Hpt domain APAC_RS04775 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS04775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS04775 PF00672 HAMP domain APAC_RS04780 PF08447 PAS fold APAC_RS04780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS04780 PF08448 PAS fold APAC_RS04785 PF00072 Response regulator receiver domain APAC_RS04795 PF13361 UvrD-like helicase C-terminal domain APAC_RS04795 PF00580 UvrD/REP helicase N-terminal domain APAC_RS04805 PF02203 Tar ligand binding domain homologue APAC_RS04805 PF00672 HAMP domain APAC_RS04805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS04820 PF00009 Elongation factor Tu GTP binding domain APAC_RS04820 PF09107 Elongation factor SelB, winged helix APAC_RS04820 PF09106 Elongation factor SelB, winged helix APAC_RS04820 PF09105 Elongation factor SelB, winged helix APAC_RS04820 PF03144 Elongation factor Tu domain 2 APAC_RS04825 PF03841 L-seryl-tRNA selenium transferase APAC_RS04855 PF03880 DbpA RNA binding domain APAC_RS04855 PF00270 DEAD/DEAH box helicase APAC_RS04855 PF00271 Helicase conserved C-terminal domain APAC_RS04860 PF02540 NAD synthase APAC_RS04860 PF00958 GMP synthase C terminal domain APAC_RS04860 PF00117 Glutamine amidotransferase class-I APAC_RS04870 PF01841 Transglutaminase-like superfamily APAC_RS04880 PF00403 Heavy-metal-associated domain APAC_RS04885 PF00158 Sigma-54 interaction domain APAC_RS04885 PF00072 Response regulator receiver domain APAC_RS04890 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS04890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS04915 PF01568 Molydopterin dinucleotide binding domain APAC_RS04915 PF00384 Molybdopterin oxidoreductase APAC_RS04915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APAC_RS04920 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APAC_RS04920 PF00384 Molybdopterin oxidoreductase APAC_RS04920 PF01568 Molydopterin dinucleotide binding domain APAC_RS04925 PF13247 4Fe-4S dicluster domain APAC_RS04935 PF02634 FdhD/NarQ family APAC_RS04955 PF00994 Probable molybdopterin binding domain APAC_RS04955 PF03453 MoeA N-terminal region (domain I and II) APAC_RS04955 PF03454 MoeA C-terminal region (domain IV) APAC_RS04960 PF12849 PBP superfamily domain APAC_RS04965 PF00528 Binding-protein-dependent transport system inner membrane component APAC_RS04970 PF00005 ABC transporter APAC_RS04980 PF02371 Transposase IS116/IS110/IS902 family APAC_RS04980 PF01548 Transposase APAC_RS04990 PF00682 HMGL-like APAC_RS04995 PF00072 Response regulator receiver domain APAC_RS04995 PF12833 Helix-turn-helix domain APAC_RS05000 PF00072 Response regulator receiver domain APAC_RS05015 PF00999 Sodium/hydrogen exchanger family APAC_RS05015 PF02254 TrkA-N domain APAC_RS05020 PF07694 5TMR of 5TMR-LYT APAC_RS05020 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS05025 PF03737 Aldolase/RraA APAC_RS05045 PF02600 Disulfide bond formation protein DsbB APAC_RS05070 PF13419 Haloacid dehalogenase-like hydrolase APAC_RS05075 PF03641 Possible lysine decarboxylase APAC_RS05095 PF04225 Opacity-associated protein A LysM-like domain APAC_RS05095 PF01551 Peptidase family M23 APAC_RS05100 PF01709 Transcriptional regulator APAC_RS05105 PF13181 Tetratricopeptide repeat APAC_RS05105 PF01435 Peptidase family M48 APAC_RS05120 PF01548 Transposase APAC_RS05120 PF02371 Transposase IS116/IS110/IS902 family APAC_RS05125 PF00330 Aconitase family (aconitate hydratase) APAC_RS05125 PF06434 Aconitate hydratase 2 N-terminus APAC_RS05125 PF11791 Aconitate B N-terminal domain APAC_RS05130 PF18665 Tetracyclin repressor-like, C-terminal domain APAC_RS05130 PF00440 Bacterial regulatory proteins, tetR family APAC_RS05135 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APAC_RS05135 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal APAC_RS05145 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APAC_RS05145 PF10518 TAT (twin-arginine translocation) pathway signal sequence APAC_RS05145 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal APAC_RS05150 PF00374 Nickel-dependent hydrogenase APAC_RS05155 PF01292 Prokaryotic cytochrome b561 APAC_RS05160 PF01750 Hydrogenase maturation protease APAC_RS05175 PF17788 HypF Kae1-like domain APAC_RS05175 PF07503 HypF finger APAC_RS05175 PF01300 Telomere recombination APAC_RS05175 PF00708 Acylphosphatase APAC_RS05225 PF02926 THUMP domain APAC_RS05225 PF02568 Thiamine biosynthesis protein (ThiI) APAC_RS05235 PF12823 Domain of unknown function (DUF3817) APAC_RS05240 PF05661 Protein of unknown function (DUF808) APAC_RS05250 PF08212 Lipocalin-like domain APAC_RS05270 PF01891 Cobalt uptake substrate-specific transmembrane region APAC_RS05285 PF00005 ABC transporter APAC_RS05295 PF02492 CobW/HypB/UreG, nucleotide-binding domain APAC_RS05300 PF01455 HupF/HypC family APAC_RS05305 PF01924 Hydrogenase formation hypA family APAC_RS05315 PF02769 AIR synthase related protein, C-terminal domain APAC_RS05315 PF00586 AIR synthase related protein, N-terminal domain APAC_RS05320 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA APAC_RS05325 PF00872 Transposase, Mutator family APAC_RS05330 PF00989 PAS fold APAC_RS05350 PF02653 Branched-chain amino acid transport system / permease component APAC_RS05355 PF11862 Domain of unknown function (DUF3382) APAC_RS05355 PF02653 Branched-chain amino acid transport system / permease component APAC_RS05360 PF00005 ABC transporter APAC_RS05360 PF12399 Branched-chain amino acid ATP-binding cassette transporter APAC_RS05365 PF00005 ABC transporter APAC_RS05370 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APAC_RS05395 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APAC_RS05395 PF18074 Primosomal protein N C-terminal domain APAC_RS05395 PF17764 3′ DNA-binding domain (3′BD) APAC_RS05395 PF00271 Helicase conserved C-terminal domain APAC_RS05395 PF00270 DEAD/DEAH box helicase APAC_RS05400 PF14602 Hexapeptide repeat of succinyl-transferase APAC_RS05400 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle APAC_RS05405 PF12848 ABC transporter APAC_RS05405 PF16326 ABC transporter C-terminal domain APAC_RS05405 PF00005 ABC transporter APAC_RS05410 PF00270 DEAD/DEAH box helicase APAC_RS05410 PF00271 Helicase conserved C-terminal domain APAC_RS05420 PF00005 ABC transporter APAC_RS05420 PF12848 ABC transporter APAC_RS05445 PF00005 ABC transporter APAC_RS05450 PF02390 Putative methyltransferase APAC_RS05460 PF00849 RNA pseudouridylate synthase APAC_RS05460 PF01479 S4 domain APAC_RS05465 PF01098 Cell cycle protein APAC_RS05480 PF00202 Aminotransferase class-III APAC_RS05485 PF06865 Pyrimidine/purine nucleoside phosphorylase APAC_RS05505 PF04545 Sigma-70, region 4 APAC_RS05505 PF04539 Sigma-70 region 3 APAC_RS05505 PF04542 Sigma-70 region 2 APAC_RS05505 PF00140 Sigma-70 factor, region 1.2 APAC_RS05510 PF00694 Aconitase C-terminal domain APAC_RS05515 PF00180 Isocitrate/isopropylmalate dehydrogenase APAC_RS05530 PF00444 Ribosomal protein L36 APAC_RS05535 PF00416 Ribosomal protein S13/S18 APAC_RS05540 PF00411 Ribosomal protein S11 APAC_RS05545 PF00163 Ribosomal protein S4/S9 N-terminal domain APAC_RS05545 PF01479 S4 domain APAC_RS05550 PF01000 RNA polymerase Rpb3/RpoA insert domain APAC_RS05550 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APAC_RS05550 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APAC_RS05555 PF01196 Ribosomal protein L17 APAC_RS05560 PF01425 Amidase APAC_RS05565 PF00478 IMP dehydrogenase / GMP reductase domain APAC_RS05565 PF00571 CBS domain APAC_RS05595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APAC_RS05620 PF04143 Sulphur transport APAC_RS05645 PF00561 alpha/beta hydrolase fold APAC_RS05650 PF02609 Exonuclease VII small subunit APAC_RS05655 PF01522 Polysaccharide deacetylase APAC_RS05660 PF00899 ThiF family APAC_RS05665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APAC_RS05665 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APAC_RS05665 PF02142 MGS-like domain APAC_RS05675 PF00072 Response regulator receiver domain APAC_RS05675 PF00196 Bacterial regulatory proteins, luxR family APAC_RS05690 PF00664 ABC transporter transmembrane region APAC_RS05690 PF00005 ABC transporter APAC_RS05690 PF03412 Peptidase C39 family APAC_RS05700 PF02661 Fic/DOC family APAC_RS05700 PF13784 Fic/DOC family N-terminal APAC_RS05720 PF01761 3-dehydroquinate synthase APAC_RS05730 PF04055 Radical SAM superfamily APAC_RS05730 PF00919 Uncharacterized protein family UPF0004 APAC_RS05735 PF06480 FtsH Extracellular APAC_RS05735 PF01434 Peptidase family M41 APAC_RS05735 PF00004 ATPase family associated with various cellular activities (AAA) APAC_RS05735 PF17862 AAA+ lid domain APAC_RS05745 PF00994 Probable molybdopterin binding domain APAC_RS05750 PF00939 Sodium:sulfate symporter transmembrane region APAC_RS05755 PF01713 Smr domain APAC_RS05755 PF00488 MutS domain V APAC_RS05765 PF00989 PAS fold APAC_RS05765 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS05765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS05770 PF00497 Bacterial extracellular solute-binding proteins, family 3 APAC_RS05780 PF07536 HWE histidine kinase APAC_RS05780 PF13581 Histidine kinase-like ATPase domain APAC_RS05780 PF13426 PAS domain APAC_RS05790 PF17158 Membrane-associated sensor, integral membrane domain APAC_RS05790 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS05795 PF00072 Response regulator receiver domain APAC_RS05795 PF00158 Sigma-54 interaction domain APAC_RS05795 PF02954 Bacterial regulatory protein, Fis family APAC_RS05800 PF00072 Response regulator receiver domain APAC_RS05800 PF13188 PAS domain APAC_RS05800 PF08448 PAS fold APAC_RS05800 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS05800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS05805 PF00672 HAMP domain APAC_RS05805 PF02203 Tar ligand binding domain homologue APAC_RS05805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS05810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS05810 PF08447 PAS fold APAC_RS05835 PF01546 Peptidase family M20/M25/M40 APAC_RS05835 PF07687 Peptidase dimerisation domain APAC_RS05850 PF01161 Phosphatidylethanolamine-binding protein APAC_RS05860 PF08274 PhnA Zinc-Ribbon APAC_RS05860 PF03831 PhnA domain APAC_RS05865 PF00248 Aldo/keto reductase family APAC_RS05885 PF01638 HxlR-like helix-turn-helix APAC_RS05890 PF00881 Nitroreductase family APAC_RS05895 PF00881 Nitroreductase family APAC_RS05905 PF00672 HAMP domain APAC_RS05905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS05905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APAC_RS05905 PF00072 Response regulator receiver domain APAC_RS05905 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS05905 PF01627 Hpt domain APAC_RS05910 PF00072 Response regulator receiver domain APAC_RS05915 PF00486 Transcriptional regulatory protein, C terminal APAC_RS05920 PF08447 PAS fold APAC_RS05920 PF08448 PAS fold APAC_RS05920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS05925 PF01627 Hpt domain APAC_RS05925 PF00072 Response regulator receiver domain APAC_RS05925 PF00486 Transcriptional regulatory protein, C terminal APAC_RS05930 PF02954 Bacterial regulatory protein, Fis family APAC_RS05930 PF00072 Response regulator receiver domain APAC_RS05930 PF00158 Sigma-54 interaction domain APAC_RS05945 PF02954 Bacterial regulatory protein, Fis family APAC_RS05945 PF00072 Response regulator receiver domain APAC_RS05945 PF00158 Sigma-54 interaction domain APAC_RS05950 PF01593 Flavin containing amine oxidoreductase APAC_RS05955 PF03109 ABC1 family APAC_RS05965 PF11849 Domain of unknown function (DUF3369) APAC_RS05975 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS05995 PF04244 Deoxyribodipyrimidine photo-lyase-related protein APAC_RS06000 PF08447 PAS fold APAC_RS06000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS06000 PF08448 PAS fold APAC_RS06010 PF00072 Response regulator receiver domain APAC_RS06020 PF00563 EAL domain APAC_RS06020 PF10442 FIST C domain APAC_RS06020 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS06020 PF08495 FIST N domain APAC_RS06040 PF01593 Flavin containing amine oxidoreductase APAC_RS06045 PF08212 Lipocalin-like domain APAC_RS06060 PF08543 Phosphomethylpyrimidine kinase APAC_RS06060 PF02581 Thiamine monophosphate synthase APAC_RS06070 PF12848 ABC transporter APAC_RS06070 PF00005 ABC transporter APAC_RS06075 PF03061 Thioesterase superfamily APAC_RS06085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS06085 PF00672 HAMP domain APAC_RS06085 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS06100 PF13520 Amino acid permease APAC_RS06105 PF00849 RNA pseudouridylate synthase APAC_RS06120 PF01645 Conserved region in glutamate synthase APAC_RS06125 PF10672 S-adenosylmethionine-dependent methyltransferase APAC_RS06125 PF17785 PUA-like domain APAC_RS06130 PF07690 Major Facilitator Superfamily APAC_RS06145 PF01471 Putative peptidoglycan binding domain APAC_RS06145 PF03734 L,D-transpeptidase catalytic domain APAC_RS06160 PF01594 AI-2E family transporter APAC_RS06165 PF09055 Nickel-containing superoxide dismutase APAC_RS06175 PF01243 Pyridoxamine 5'-phosphate oxidase APAC_RS06175 PF10615 Protein of unknown function (DUF2470) APAC_RS06185 PF07411 Domain of unknown function (DUF1508) APAC_RS06190 PF00194 Eukaryotic-type carbonic anhydrase APAC_RS06195 PF01595 Cyclin M transmembrane N-terminal domain APAC_RS06195 PF00571 CBS domain APAC_RS06195 PF03471 Transporter associated domain APAC_RS06205 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS06215 PF17760 UvrA interaction domain APAC_RS06215 PF17755 UvrA DNA-binding domain APAC_RS06220 PF00694 Aconitase C-terminal domain APAC_RS06220 PF00330 Aconitase family (aconitate hydratase) APAC_RS06230 PF00132 Bacterial transferase hexapeptide (six repeats) APAC_RS06230 PF06426 Serine acetyltransferase, N-terminal APAC_RS06235 PF17810 Arginine decarboxylase helical bundle domain APAC_RS06235 PF17944 Arginine decarboxylase C-terminal helical extension APAC_RS06235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APAC_RS06240 PF03129 Anticodon binding domain APAC_RS06240 PF13393 Histidyl-tRNA synthetase APAC_RS06245 PF02223 Thymidylate kinase APAC_RS06250 PF01467 Cytidylyltransferase-like APAC_RS06255 PF02441 Flavoprotein APAC_RS06260 PF02796 Helix-turn-helix domain of resolvase APAC_RS06260 PF00239 Resolvase, N terminal domain APAC_RS06265 PF03601 Conserved hypothetical protein 698 APAC_RS06270 PF01281 Ribosomal protein L9, N-terminal domain APAC_RS06270 PF03948 Ribosomal protein L9, C-terminal domain APAC_RS06275 PF00227 Proteasome subunit APAC_RS06280 PF07724 AAA domain (Cdc48 subfamily) APAC_RS06280 PF10431 C-terminal, D2-small domain, of ClpB protein APAC_RS06290 PF01026 TatD related DNase APAC_RS06295 PF05036 Sporulation related domain APAC_RS06295 PF03330 Lytic transglycolase APAC_RS06300 PF00475 Imidazoleglycerol-phosphate dehydratase APAC_RS06320 PF01926 50S ribosome-binding GTPase APAC_RS06325 PF00583 Acetyltransferase (GNAT) family APAC_RS06335 PF00578 AhpC/TSA family APAC_RS06340 PF00873 AcrB/AcrD/AcrF family APAC_RS06345 PF00873 AcrB/AcrD/AcrF family APAC_RS06375 PF00813 FliP family APAC_RS06380 PF03717 Penicillin-binding Protein dimerisation domain APAC_RS06380 PF00905 Penicillin binding protein transpeptidase domain APAC_RS06390 PF01312 FlhB HrpN YscU SpaS Family APAC_RS06400 PF02623 FliW protein APAC_RS06410 PF03960 ArsC family APAC_RS06420 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain APAC_RS06420 PF14490 Helix-hairpin-helix containing domain APAC_RS06420 PF13538 UvrD-like helicase C-terminal domain APAC_RS06430 PF02491 SHS2 domain inserted in FTSA APAC_RS06435 PF00091 Tubulin/FtsZ family, GTPase domain APAC_RS06435 PF12327 FtsZ family, C-terminal domain APAC_RS06440 PF13411 MerR HTH family regulatory protein APAC_RS06445 PF01556 DnaJ C terminal domain APAC_RS06445 PF00226 DnaJ domain APAC_RS06455 PF01266 FAD dependent oxidoreductase APAC_RS06455 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APAC_RS06470 PF03971 Monomeric isocitrate dehydrogenase APAC_RS06485 PF12704 MacB-like periplasmic core domain APAC_RS06485 PF02687 FtsX-like permease family APAC_RS06490 PF07516 SecA Wing and Scaffold domain APAC_RS06490 PF01043 SecA preprotein cross-linking domain APAC_RS06490 PF02810 SEC-C motif APAC_RS06490 PF00271 Helicase conserved C-terminal domain APAC_RS06490 PF07517 SecA DEAD-like domain APAC_RS06500 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS06500 PF00563 EAL domain APAC_RS06500 PF03707 Bacterial signalling protein N terminal repeat APAC_RS06505 PF01527 Transposase APAC_RS06510 PF13276 HTH-like domain APAC_RS06510 PF00665 Integrase core domain APAC_RS06510 PF13333 Integrase core domain APAC_RS06515 PF00563 EAL domain APAC_RS06515 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS06515 PF03707 Bacterial signalling protein N terminal repeat APAC_RS06540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS06540 PF08447 PAS fold APAC_RS06545 PF00672 HAMP domain APAC_RS06545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS06545 PF02203 Tar ligand binding domain homologue APAC_RS06550 PF01594 AI-2E family transporter APAC_RS06555 PF00664 ABC transporter transmembrane region APAC_RS06555 PF00005 ABC transporter APAC_RS06580 PF00486 Transcriptional regulatory protein, C terminal APAC_RS06580 PF00072 Response regulator receiver domain APAC_RS06585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS06595 PF00669 Bacterial flagellin N-terminal helical region APAC_RS06595 PF07196 Flagellin hook IN motif APAC_RS06595 PF00700 Bacterial flagellin C-terminal helical region APAC_RS06595 PF00669 Bacterial flagellin N-terminal helical region APAC_RS06595 PF07196 Flagellin hook IN motif APAC_RS06595 PF00700 Bacterial flagellin C-terminal helical region APAC_RS06615 PF03441 FAD binding domain of DNA photolyase APAC_RS06615 PF00875 DNA photolyase APAC_RS06630 PF06580 Histidine kinase APAC_RS06630 PF07694 5TMR of 5TMR-LYT APAC_RS06635 PF04397 LytTr DNA-binding domain APAC_RS06635 PF00072 Response regulator receiver domain APAC_RS06645 PF00762 Ferrochelatase APAC_RS06650 PF12804 MobA-like NTP transferase domain APAC_RS06650 PF00132 Bacterial transferase hexapeptide (six repeats) APAC_RS06660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APAC_RS06660 PF00034 Cytochrome c APAC_RS06660 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APAC_RS06665 PF00111 2Fe-2S iron-sulfur cluster binding domain APAC_RS06665 PF01799 [2Fe-2S] binding domain APAC_RS06670 PF12706 Beta-lactamase superfamily domain APAC_RS06675 PF00106 short chain dehydrogenase APAC_RS06680 PF00107 Zinc-binding dehydrogenase APAC_RS06680 PF08240 Alcohol dehydrogenase GroES-like domain APAC_RS06685 PF00465 Iron-containing alcohol dehydrogenase APAC_RS06700 PF00296 Luciferase-like monooxygenase APAC_RS06725 PF03793 PASTA domain APAC_RS06725 PF00069 Protein kinase domain APAC_RS06755 PF06719 AraC-type transcriptional regulator N-terminus APAC_RS06755 PF12833 Helix-turn-helix domain APAC_RS06760 PF00270 DEAD/DEAH box helicase APAC_RS06760 PF00271 Helicase conserved C-terminal domain APAC_RS06765 PF00989 PAS fold APAC_RS06765 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS06765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS06765 PF08447 PAS fold APAC_RS06780 PF02472 Biopolymer transport protein ExbD/TolR APAC_RS06785 PF01618 MotA/TolQ/ExbB proton channel family APAC_RS06805 PF00005 ABC transporter APAC_RS06810 PF12704 MacB-like periplasmic core domain APAC_RS06810 PF02687 FtsX-like permease family APAC_RS06810 PF00005 ABC transporter APAC_RS06825 PF01475 Ferric uptake regulator family APAC_RS06835 PF07715 TonB-dependent Receptor Plug Domain APAC_RS06835 PF00593 TonB dependent receptor APAC_RS06865 PF02384 N-6 DNA Methylase APAC_RS06865 PF12161 HsdM N-terminal domain APAC_RS06880 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APAC_RS06880 PF18766 SWI2/SNF2 ATPase APAC_RS06880 PF12008 Type I restriction and modification enzyme - subunit R C terminal APAC_RS06950 PF00216 Bacterial DNA-binding protein APAC_RS06960 PF01795 MraW methylase family APAC_RS06970 PF00873 AcrB/AcrD/AcrF family APAC_RS06975 PF00072 Response regulator receiver domain APAC_RS06975 PF00486 Transcriptional regulatory protein, C terminal APAC_RS06980 PF13460 NAD(P)H-binding APAC_RS06980 PF11066 Protein of unknown function (DUF2867) APAC_RS07000 PF17156 Gammaproteobacterial periplasmic sensor domain APAC_RS07000 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS07010 PF00668 Condensation domain APAC_RS07010 PF13193 AMP-binding enzyme C-terminal domain APAC_RS07010 PF00501 AMP-binding enzyme APAC_RS07010 PF00550 Phosphopantetheine attachment site APAC_RS07015 PF13941 MutL protein APAC_RS07020 PF06368 Methylaspartate mutase E chain (MutE) APAC_RS07025 PF02310 B12 binding domain APAC_RS07030 PF04055 Radical SAM superfamily APAC_RS07030 PF06969 HemN C-terminal domain APAC_RS07035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APAC_RS07035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APAC_RS07040 PF00490 Delta-aminolevulinic acid dehydratase APAC_RS07045 PF00925 GTP cyclohydrolase II APAC_RS07050 PF02527 rRNA small subunit methyltransferase G APAC_RS07065 PF02092 Glycyl-tRNA synthetase beta subunit APAC_RS07095 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APAC_RS07095 PF00925 GTP cyclohydrolase II APAC_RS07105 PF01293 Phosphoenolpyruvate carboxykinase APAC_RS07110 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit APAC_RS07115 PF00682 HMGL-like APAC_RS07115 PF00364 Biotin-requiring enzyme APAC_RS07115 PF02436 Conserved carboxylase domain APAC_RS07125 PF00367 phosphotransferase system, EIIB APAC_RS07125 PF02378 Phosphotransferase system, EIIC APAC_RS07135 PF00133 tRNA synthetases class I (I, L, M and V) APAC_RS07135 PF09334 tRNA synthetases class I (M) APAC_RS07135 PF01588 Putative tRNA binding domain APAC_RS07145 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APAC_RS07170 PF00749 tRNA synthetases class I (E and Q), catalytic domain APAC_RS07175 PF05193 Peptidase M16 inactive domain APAC_RS07180 PF04055 Radical SAM superfamily APAC_RS07185 PF07244 Surface antigen variable number repeat APAC_RS07185 PF01103 Surface antigen APAC_RS07190 PF01842 ACT domain APAC_RS07190 PF02153 Prephenate dehydrogenase APAC_RS07210 PF00696 Amino acid kinase family APAC_RS07210 PF13840 ACT domain APAC_RS07210 PF01842 ACT domain APAC_RS07215 PF00293 NUDIX domain APAC_RS07220 PF06969 HemN C-terminal domain APAC_RS07220 PF04055 Radical SAM superfamily APAC_RS07225 PF05175 Methyltransferase small domain APAC_RS07225 PF17827 PrmC N-terminal domain APAC_RS07230 PF01432 Peptidase family M3 APAC_RS07250 PF00589 Phage integrase family APAC_RS07250 PF18644 Phage integrase SAM-like domain APAC_RS07255 PF01339 CheB methylesterase APAC_RS07255 PF00072 Response regulator receiver domain APAC_RS07260 PF03975 CheD chemotactic sensory transduction APAC_RS07265 PF03705 CheR methyltransferase, all-alpha domain APAC_RS07265 PF01739 CheR methyltransferase, SAM binding domain APAC_RS07270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS07270 PF01584 CheW-like domain APAC_RS07270 PF09078 CheY binding APAC_RS07270 PF02895 Signal transducing histidine kinase, homodimeric domain APAC_RS07270 PF01627 Hpt domain APAC_RS07275 PF00072 Response regulator receiver domain APAC_RS07280 PF00013 KH domain APAC_RS07280 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APAC_RS07280 PF00575 S1 RNA binding domain APAC_RS07280 PF03725 3' exoribonuclease family, domain 2 APAC_RS07280 PF01138 3' exoribonuclease family, domain 1 APAC_RS07290 PF03968 OstA-like protein APAC_RS07290 PF04453 LPS transport system D APAC_RS07300 PF02843 Phosphoribosylglycinamide synthetase, C domain APAC_RS07300 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APAC_RS07300 PF02844 Phosphoribosylglycinamide synthetase, N domain APAC_RS07305 PF11638 DnaA N-terminal domain APAC_RS07305 PF08299 Bacterial dnaA protein helix-turn-helix APAC_RS07305 PF00308 Bacterial dnaA protein APAC_RS07310 PF01740 STAS domain APAC_RS07310 PF00916 Sulfate permease family APAC_RS07315 PF01926 50S ribosome-binding GTPase APAC_RS07315 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APAC_RS07320 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus APAC_RS07320 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APAC_RS07325 PF01580 FtsK/SpoIIIE family APAC_RS07325 PF09397 Ftsk gamma domain APAC_RS07325 PF17854 FtsK alpha domain APAC_RS07330 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APAC_RS07330 PF00132 Bacterial transferase hexapeptide (six repeats) APAC_RS07335 PF10369 Small subunit of acetolactate synthase APAC_RS07340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APAC_RS07340 PF00205 Thiamine pyrophosphate enzyme, central domain APAC_RS07340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APAC_RS07350 PF02541 Ppx/GppA phosphatase family APAC_RS07360 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS07375 PF00085 Thioredoxin APAC_RS07385 PF04463 Protein of unknown function (DUF523) APAC_RS07390 PF01171 PP-loop family APAC_RS07405 PF03454 MoeA C-terminal region (domain IV) APAC_RS07405 PF03453 MoeA N-terminal region (domain I and II) APAC_RS07405 PF00994 Probable molybdopterin binding domain APAC_RS07420 PF02646 RmuC family APAC_RS07425 PF01435 Peptidase family M48 APAC_RS07425 PF16491 CAAX prenyl protease N-terminal, five membrane helices APAC_RS07430 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS07430 PF00072 Response regulator receiver domain APAC_RS07440 PF03061 Thioesterase superfamily APAC_RS07445 PF09962 Uncharacterized conserved protein (DUF2196) APAC_RS07455 PF02203 Tar ligand binding domain homologue APAC_RS07455 PF00672 HAMP domain APAC_RS07455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS07460 PF00248 Aldo/keto reductase family APAC_RS07480 PF01032 FecCD transport family APAC_RS07485 PF00005 ABC transporter APAC_RS07495 PF00593 TonB dependent receptor APAC_RS07495 PF07715 TonB-dependent Receptor Plug Domain APAC_RS07515 PF13419 Haloacid dehalogenase-like hydrolase APAC_RS07520 PF01479 S4 domain APAC_RS07520 PF00849 RNA pseudouridylate synthase APAC_RS07525 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APAC_RS07530 PF00672 HAMP domain APAC_RS07530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS07530 PF02203 Tar ligand binding domain homologue APAC_RS07535 PF02698 DUF218 domain APAC_RS07545 PF02472 Biopolymer transport protein ExbD/TolR APAC_RS07550 PF01618 MotA/TolQ/ExbB proton channel family APAC_RS07565 PF07715 TonB-dependent Receptor Plug Domain APAC_RS07565 PF00593 TonB dependent receptor APAC_RS07575 PF00486 Transcriptional regulatory protein, C terminal APAC_RS07575 PF00072 Response regulator receiver domain APAC_RS07580 PF02690 Na+/Pi-cotransporter APAC_RS07595 PF00588 SpoU rRNA Methylase family APAC_RS07600 PF00551 Formyl transferase APAC_RS07600 PF01842 ACT domain APAC_RS07605 PF02578 Multi-copper polyphenol oxidoreductase laccase APAC_RS07610 PF01209 ubiE/COQ5 methyltransferase family APAC_RS07615 PF08501 Shikimate dehydrogenase substrate binding domain APAC_RS07640 PF03738 Glutathionylspermidine synthase preATP-grasp APAC_RS07650 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APAC_RS07655 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APAC_RS07660 PF02540 NAD synthase APAC_RS07680 PF00226 DnaJ domain APAC_RS07680 PF05099 Tellurite resistance protein TerB APAC_RS07690 PF00902 Sec-independent protein translocase protein (TatC) APAC_RS07695 PF02547 Queuosine biosynthesis protein APAC_RS07705 PF00132 Bacterial transferase hexapeptide (six repeats) APAC_RS07715 PF01467 Cytidylyltransferase-like APAC_RS07730 PF12867 DinB superfamily APAC_RS07730 PF03781 Sulfatase-modifying factor enzyme 1 APAC_RS07745 PF03737 Aldolase/RraA APAC_RS07755 PF02754 Cysteine-rich domain APAC_RS07755 PF02665 Nitrate reductase gamma subunit APAC_RS07755 PF13183 4Fe-4S dicluster domain APAC_RS07760 PF01790 Prolipoprotein diacylglyceryl transferase APAC_RS07780 PF00476 DNA polymerase family A APAC_RS07780 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APAC_RS07780 PF01367 5'-3' exonuclease, C-terminal SAM fold APAC_RS07785 PF02348 Cytidylyltransferase APAC_RS07790 PF00563 EAL domain APAC_RS07790 PF08495 FIST N domain APAC_RS07790 PF10442 FIST C domain APAC_RS07790 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS07795 PF12399 Branched-chain amino acid ATP-binding cassette transporter APAC_RS07795 PF00005 ABC transporter APAC_RS07800 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APAC_RS07805 PF02885 Glycosyl transferase family, helical bundle domain APAC_RS07805 PF00591 Glycosyl transferase family, a/b domain APAC_RS07815 PF00764 Arginosuccinate synthase APAC_RS07820 PF07687 Peptidase dimerisation domain APAC_RS07820 PF01546 Peptidase family M20/M25/M40 APAC_RS07825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APAC_RS07825 PF00289 Biotin carboxylase, N-terminal domain APAC_RS07825 PF02785 Biotin carboxylase C-terminal domain APAC_RS07840 PF00132 Bacterial transferase hexapeptide (six repeats) APAC_RS07850 PF08448 PAS fold APAC_RS07850 PF08447 PAS fold APAC_RS07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS07860 PF13662 Toprim domain APAC_RS07860 PF02132 RecR protein APAC_RS07865 PF01556 DnaJ C terminal domain APAC_RS07865 PF00684 DnaJ central domain APAC_RS07865 PF00226 DnaJ domain APAC_RS07880 PF00753 Metallo-beta-lactamase superfamily APAC_RS07885 PF00563 EAL domain APAC_RS07885 PF08447 PAS fold APAC_RS07885 PF08448 PAS fold APAC_RS07885 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS07890 PF00360 Phytochrome region APAC_RS07890 PF01590 GAF domain APAC_RS07890 PF00563 EAL domain APAC_RS07890 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS07895 PF08003 Protein of unknown function (DUF1698) APAC_RS07900 PF05140 ResB-like family APAC_RS07900 PF01578 Cytochrome C assembly protein APAC_RS07905 PF00072 Response regulator receiver domain APAC_RS07905 PF01627 Hpt domain APAC_RS07905 PF00486 Transcriptional regulatory protein, C terminal APAC_RS07920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS07920 PF00989 PAS fold APAC_RS07920 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS07925 PF00072 Response regulator receiver domain APAC_RS07925 PF00196 Bacterial regulatory proteins, luxR family APAC_RS07930 PF07687 Peptidase dimerisation domain APAC_RS07930 PF01546 Peptidase family M20/M25/M40 APAC_RS07950 PF00196 Bacterial regulatory proteins, luxR family APAC_RS07950 PF00072 Response regulator receiver domain APAC_RS07960 PF03412 Peptidase C39 family APAC_RS07960 PF00005 ABC transporter APAC_RS07960 PF00664 ABC transporter transmembrane region APAC_RS07965 PF12792 CSS motif domain associated with EAL APAC_RS07965 PF00563 EAL domain APAC_RS07990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS07990 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS08005 PF00691 OmpA family APAC_RS08025 PF00672 HAMP domain APAC_RS08025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS08025 PF02203 Tar ligand binding domain homologue APAC_RS08030 PF00533 BRCA1 C Terminus (BRCT) domain APAC_RS08030 PF12826 Helix-hairpin-helix motif APAC_RS08030 PF03120 NAD-dependent DNA ligase OB-fold domain APAC_RS08030 PF01653 NAD-dependent DNA ligase adenylation domain APAC_RS08035 PF00072 Response regulator receiver domain APAC_RS08035 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS08035 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APAC_RS08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS08035 PF01627 Hpt domain APAC_RS08035 PF00672 HAMP domain APAC_RS08045 PF13276 HTH-like domain APAC_RS08045 PF00665 Integrase core domain APAC_RS08045 PF13333 Integrase core domain APAC_RS08050 PF01527 Transposase APAC_RS08095 PF03749 Sugar fermentation stimulation protein RE domain APAC_RS08095 PF17746 SfsA N-terminal OB domain APAC_RS08110 PF07995 Glucose / Sorbosone dehydrogenase APAC_RS08125 PF00561 alpha/beta hydrolase fold APAC_RS08135 PF08241 Methyltransferase domain APAC_RS08135 PF12697 Alpha/beta hydrolase family APAC_RS08160 PF01527 Transposase APAC_RS08165 PF13276 HTH-like domain APAC_RS08165 PF00665 Integrase core domain APAC_RS08165 PF13333 Integrase core domain APAC_RS08195 PF04973 Nicotinamide mononucleotide transporter APAC_RS08215 PF00849 RNA pseudouridylate synthase APAC_RS08220 PF00958 GMP synthase C terminal domain APAC_RS08220 PF02540 NAD synthase APAC_RS08220 PF00117 Glutamine amidotransferase class-I APAC_RS08225 PF03600 Citrate transporter APAC_RS08230 PF00890 FAD binding domain APAC_RS08230 PF02910 Fumarate reductase flavoprotein C-term APAC_RS08245 PF00155 Aminotransferase class I and II APAC_RS08250 PF01545 Cation efflux family APAC_RS08250 PF16916 Dimerisation domain of Zinc Transporter APAC_RS08260 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APAC_RS08260 PF00056 lactate/malate dehydrogenase, NAD binding domain APAC_RS08295 PF02371 Transposase IS116/IS110/IS902 family APAC_RS08295 PF01548 Transposase APAC_RS08335 PF00005 ABC transporter APAC_RS08335 PF12848 ABC transporter APAC_RS08335 PF16326 ABC transporter C-terminal domain APAC_RS08340 PF09424 Yqey-like protein APAC_RS08345 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS08360 PF00106 short chain dehydrogenase APAC_RS08365 PF12911 N-terminal TM domain of oligopeptide transport permease C APAC_RS08365 PF00528 Binding-protein-dependent transport system inner membrane component APAC_RS08375 PF00013 KH domain APAC_RS08375 PF01966 HD domain APAC_RS08375 PF12072 Domain of unknown function (DUF3552) APAC_RS08385 PF00578 AhpC/TSA family APAC_RS08390 PF00448 SRP54-type protein, GTPase domain APAC_RS08395 PF05728 Uncharacterised protein family (UPF0227) APAC_RS08420 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system APAC_RS08435 PF04851 Type III restriction enzyme, res subunit APAC_RS08435 PF00271 Helicase conserved C-terminal domain APAC_RS08445 PF18073 Rubredoxin metal binding domain APAC_RS08455 PF02130 Uncharacterized protein family UPF0054 APAC_RS08460 PF01699 Sodium/calcium exchanger protein APAC_RS08470 PF02915 Rubrerythrin APAC_RS08475 PF02915 Rubrerythrin APAC_RS08485 PF03023 Lipid II flippase MurJ APAC_RS08490 PF00664 ABC transporter transmembrane region APAC_RS08490 PF00005 ABC transporter APAC_RS08495 PF01180 Dihydroorotate dehydrogenase APAC_RS08505 PF00701 Dihydrodipicolinate synthetase family APAC_RS08515 PF01066 CDP-alcohol phosphatidyltransferase APAC_RS08520 PF17820 PDZ domain APAC_RS08520 PF02163 Peptidase family M50 APAC_RS08525 PF01168 Alanine racemase, N-terminal domain APAC_RS08530 PF00795 Carbon-nitrogen hydrolase APAC_RS08530 PF00583 Acetyltransferase (GNAT) family APAC_RS08535 PF00218 Indole-3-glycerol phosphate synthase APAC_RS08545 PF03692 Putative zinc- or iron-chelating domain APAC_RS08550 PF05175 Methyltransferase small domain APAC_RS08560 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II APAC_RS08560 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg APAC_RS08560 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APAC_RS08565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APAC_RS08580 PF14579 Helix-hairpin-helix motif APAC_RS08580 PF07733 Bacterial DNA polymerase III alpha NTPase domain APAC_RS08580 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APAC_RS08580 PF14480 DNA polymerase III polC-type N-terminus I APAC_RS08580 PF02811 PHP domain APAC_RS08580 PF00929 Exonuclease APAC_RS08580 PF11490 DNA polymerase III polC-type N-terminus II APAC_RS08585 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APAC_RS08590 PF00834 Ribulose-phosphate 3 epimerase family APAC_RS08600 PF00293 NUDIX domain APAC_RS08605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS08610 PF00486 Transcriptional regulatory protein, C terminal APAC_RS08610 PF00072 Response regulator receiver domain APAC_RS08620 PF04461 Protein of unknown function (DUF520) APAC_RS08630 PF04241 Protein of unknown function (DUF423) APAC_RS08640 PF00156 Phosphoribosyl transferase domain APAC_RS08645 PF00860 Permease family APAC_RS08675 PF01590 GAF domain APAC_RS08675 PF00563 EAL domain APAC_RS08675 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS08675 PF00360 Phytochrome region APAC_RS08695 PF04055 Radical SAM superfamily APAC_RS08700 PF01208 Uroporphyrinogen decarboxylase (URO-D) APAC_RS08710 PF01118 Semialdehyde dehydrogenase, NAD binding domain APAC_RS08710 PF02774 Semialdehyde dehydrogenase, dimerisation domain APAC_RS08715 PF03989 DNA gyrase C-terminal domain, beta-propeller APAC_RS08715 PF00521 DNA gyrase/topoisomerase IV, subunit A APAC_RS08725 PF01960 ArgJ family APAC_RS08735 PF00830 Ribosomal L28 family APAC_RS08755 PF00535 Glycosyl transferase family 2 APAC_RS08760 PF00535 Glycosyl transferase family 2 APAC_RS08765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APAC_RS08785 PF05523 WxcM-like, C-terminal APAC_RS08790 PF16363 GDP-mannose 4,6 dehydratase APAC_RS08795 PF04321 RmlD substrate binding domain APAC_RS08800 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APAC_RS08805 PF00483 Nucleotidyl transferase APAC_RS08820 PF13439 Glycosyltransferase Family 4 APAC_RS08820 PF00534 Glycosyl transferases group 1 APAC_RS08825 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APAC_RS08825 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APAC_RS08825 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APAC_RS08845 PF00037 4Fe-4S binding domain APAC_RS08850 PF00459 Inositol monophosphatase family APAC_RS08855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APAC_RS08855 PF07992 Pyridine nucleotide-disulphide oxidoreductase APAC_RS08860 PF01645 Conserved region in glutamate synthase APAC_RS08860 PF00310 Glutamine amidotransferases class-II APAC_RS08860 PF04898 Glutamate synthase central domain APAC_RS08860 PF01493 GXGXG motif APAC_RS08865 PF03480 Bacterial extracellular solute-binding protein, family 7 APAC_RS08875 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APAC_RS08885 PF13472 GDSL-like Lipase/Acylhydrolase family APAC_RS08890 PF00005 ABC transporter APAC_RS08925 PF00075 RNase H APAC_RS08940 PF15935 RNase LS, bacterial toxin APAC_RS08945 PF13476 AAA domain APAC_RS08950 PF12320 Type 5 capsule protein repressor C-terminal domain APAC_RS08950 PF00149 Calcineurin-like phosphoesterase APAC_RS08965 PF01966 HD domain APAC_RS08980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS08980 PF08448 PAS fold APAC_RS08980 PF08447 PAS fold APAC_RS08985 PF00486 Transcriptional regulatory protein, C terminal APAC_RS08985 PF00072 Response regulator receiver domain APAC_RS08995 PF00082 Subtilase family APAC_RS09045 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS09045 PF00072 Response regulator receiver domain APAC_RS09060 PF00873 AcrB/AcrD/AcrF family APAC_RS09065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APAC_RS09070 PF13333 Integrase core domain APAC_RS09070 PF00665 Integrase core domain APAC_RS09070 PF13276 HTH-like domain APAC_RS09075 PF01527 Transposase APAC_RS09105 PF02796 Helix-turn-helix domain of resolvase APAC_RS09105 PF00239 Resolvase, N terminal domain APAC_RS09120 PF18766 SWI2/SNF2 ATPase APAC_RS09120 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APAC_RS09120 PF11867 Domain of unknown function (DUF3387) APAC_RS09170 PF00263 Bacterial type II and III secretion system protein APAC_RS09170 PF03958 Bacterial type II/III secretion system short domain APAC_RS09230 PF13356 Arm DNA-binding domain APAC_RS09230 PF00589 Phage integrase family APAC_RS09245 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APAC_RS09250 PF01029 NusB family APAC_RS09255 PF00885 6,7-dimethyl-8-ribityllumazine synthase APAC_RS09260 PF00793 DAHP synthetase I family APAC_RS09285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APAC_RS09315 PF00437 Type II/IV secretion system protein APAC_RS09320 PF00263 Bacterial type II and III secretion system protein APAC_RS09320 PF03958 Bacterial type II/III secretion system short domain APAC_RS09350 PF00482 Type II secretion system (T2SS), protein F APAC_RS09360 PF07963 Prokaryotic N-terminal methylation motif APAC_RS09360 PF08334 Type II secretion system (T2SS), protein G APAC_RS09365 PF01205 Uncharacterized protein family UPF0029 APAC_RS09365 PF09186 Domain of unknown function (DUF1949) APAC_RS09370 PF01728 FtsJ-like methyltransferase APAC_RS09370 PF01479 S4 domain APAC_RS09375 PF01687 Riboflavin kinase APAC_RS09375 PF06574 FAD synthetase APAC_RS09385 PF13649 Methyltransferase domain APAC_RS09390 PF00578 AhpC/TSA family APAC_RS09400 PF01565 FAD binding domain APAC_RS09400 PF02913 FAD linked oxidases, C-terminal domain APAC_RS09425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APAC_RS09425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APAC_RS09425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APAC_RS09425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APAC_RS09430 PF00483 Nucleotidyl transferase APAC_RS09435 PF00342 Phosphoglucose isomerase APAC_RS09440 PF01048 Phosphorylase superfamily APAC_RS09445 PF00698 Acyl transferase domain APAC_RS09450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APAC_RS09465 PF04052 TolB amino-terminal domain APAC_RS09475 PF02472 Biopolymer transport protein ExbD/TolR APAC_RS09480 PF01618 MotA/TolQ/ExbB proton channel family APAC_RS09485 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APAC_RS09490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APAC_RS09490 PF02874 ATP synthase alpha/beta family, beta-barrel domain APAC_RS09495 PF00231 ATP synthase APAC_RS09500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APAC_RS09500 PF00306 ATP synthase alpha/beta chain, C terminal domain APAC_RS09500 PF02874 ATP synthase alpha/beta family, beta-barrel domain APAC_RS09505 PF00213 ATP synthase delta (OSCP) subunit APAC_RS09510 PF00430 ATP synthase B/B' CF(0) APAC_RS09520 PF17762 HTH domain found in ParB protein APAC_RS09520 PF02195 ParB-like nuclease domain APAC_RS09525 PF13614 AAA domain APAC_RS09530 PF08279 HTH domain APAC_RS09530 PF02237 Biotin protein ligase C terminal domain APAC_RS09530 PF03099 Biotin/lipoate A/B protein ligase family APAC_RS09540 PF02911 Formyl transferase, C-terminal domain APAC_RS09540 PF00551 Formyl transferase APAC_RS09545 PF00696 Amino acid kinase family APAC_RS09550 PF01926 50S ribosome-binding GTPase APAC_RS09550 PF01018 GTP1/OBG APAC_RS09555 PF01016 Ribosomal L27 protein APAC_RS09560 PF00829 Ribosomal prokaryotic L21 protein APAC_RS09565 PF01042 Endoribonuclease L-PSP APAC_RS09570 PF13662 Toprim domain APAC_RS09570 PF16730 DnaG-primase C-terminal, helicase-binding domain APAC_RS09570 PF08275 DNA primase catalytic core, N-terminal domain APAC_RS09570 PF01807 CHC2 zinc finger APAC_RS09575 PF18073 Rubredoxin metal binding domain APAC_RS09580 PF00075 RNase H APAC_RS09585 PF00035 Double-stranded RNA binding motif APAC_RS09585 PF14622 Ribonuclease-III-like APAC_RS09590 PF01264 Chorismate synthase APAC_RS09600 PF00731 AIR carboxylase APAC_RS09605 PF02222 ATP-grasp domain APAC_RS09605 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APAC_RS09620 PF01435 Peptidase family M48 APAC_RS09625 PF00300 Histidine phosphatase superfamily (branch 1) APAC_RS09630 PF12631 MnmE helical domain APAC_RS09630 PF10396 GTP-binding protein TrmE N-terminus APAC_RS09630 PF01926 50S ribosome-binding GTPase APAC_RS09640 PF14849 YidC periplasmic domain APAC_RS09640 PF02096 60Kd inner membrane protein APAC_RS09645 PF01809 Putative membrane protein insertion efficiency factor APAC_RS09650 PF00825 Ribonuclease P APAC_RS09655 PF00468 Ribosomal protein L34 APAC_RS09660 PF00004 ATPase family associated with various cellular activities (AAA) APAC_RS09660 PF10431 C-terminal, D2-small domain, of ClpB protein APAC_RS09660 PF17871 AAA lid domain APAC_RS09660 PF07724 AAA domain (Cdc48 subfamily) APAC_RS09660 PF02861 Clp amino terminal domain, pathogenicity island component APAC_RS09665 PF01351 Ribonuclease HII APAC_RS09695 PF01625 Peptide methionine sulfoxide reductase APAC_RS09700 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS09700 PF00989 PAS fold APAC_RS09700 PF08447 PAS fold APAC_RS09700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS09725 PF01641 SelR domain APAC_RS09730 PF01557 Fumarylacetoacetate (FAA) hydrolase family APAC_RS09745 PF00202 Aminotransferase class-III APAC_RS09750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS09750 PF08447 PAS fold APAC_RS09750 PF08448 PAS fold APAC_RS09755 PF01808 AICARFT/IMPCHase bienzyme APAC_RS09755 PF02142 MGS-like domain APAC_RS09760 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APAC_RS09760 PF00586 AIR synthase related protein, N-terminal domain APAC_RS09760 PF02769 AIR synthase related protein, C-terminal domain APAC_RS09770 PF01464 Transglycosylase SLT domain APAC_RS09770 PF01551 Peptidase family M23 APAC_RS09770 PF10145 Phage-related minor tail protein APAC_RS09775 PF00571 CBS domain APAC_RS09775 PF01769 Divalent cation transporter APAC_RS09775 PF03448 MgtE intracellular N domain APAC_RS09780 PF01227 GTP cyclohydrolase I APAC_RS09785 PF00482 Type II secretion system (T2SS), protein F APAC_RS09790 PF00437 Type II/IV secretion system protein APAC_RS09810 PF01926 50S ribosome-binding GTPase APAC_RS09810 PF07650 KH domain APAC_RS09815 PF01078 Magnesium chelatase, subunit ChlI APAC_RS09815 PF13335 Magnesium chelatase, subunit ChlI C-terminal APAC_RS09825 PF01327 Polypeptide deformylase APAC_RS09830 PF00574 Clp protease APAC_RS09835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APAC_RS09835 PF05698 Bacterial trigger factor protein (TF) C-terminus APAC_RS09835 PF05697 Bacterial trigger factor protein (TF) APAC_RS09840 PF13519 von Willebrand factor type A domain APAC_RS09840 PF07584 Aerotolerance regulator N-terminal APAC_RS09865 PF02384 N-6 DNA Methylase APAC_RS09875 PF03976 Polyphosphate kinase 2 (PPK2) APAC_RS09880 PF03976 Polyphosphate kinase 2 (PPK2) APAC_RS09885 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APAC_RS09890 PF00301 Rubredoxin APAC_RS09895 PF16653 Saccharopine dehydrogenase C-terminal domain APAC_RS09895 PF03435 Saccharopine dehydrogenase NADP binding domain APAC_RS09905 PF14659 Phage integrase, N-terminal SAM-like domain APAC_RS09905 PF00589 Phage integrase family APAC_RS09905 PF13356 Arm DNA-binding domain APAC_RS09920 PF00075 RNase H APAC_RS10000 PF08448 PAS fold APAC_RS10000 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS10005 PF00749 tRNA synthetases class I (E and Q), catalytic domain APAC_RS10005 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain APAC_RS10015 PF13344 Haloacid dehalogenase-like hydrolase APAC_RS10015 PF00293 NUDIX domain APAC_RS10025 PF00171 Aldehyde dehydrogenase family APAC_RS10035 PF01810 LysE type translocator APAC_RS10045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APAC_RS10045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APAC_RS10045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APAC_RS10045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APAC_RS10055 PF01451 Low molecular weight phosphotyrosine protein phosphatase APAC_RS10085 PF00258 Flavodoxin APAC_RS10090 PF01475 Ferric uptake regulator family APAC_RS10100 PF07664 Ferrous iron transport protein B C terminus APAC_RS10100 PF07670 Nucleoside recognition APAC_RS10100 PF02421 Ferrous iron transport protein B APAC_RS10115 PF04377 Arginine-tRNA-protein transferase, C terminus APAC_RS10115 PF04376 Arginine-tRNA-protein transferase, N terminus APAC_RS10120 PF00290 Tryptophan synthase alpha chain APAC_RS10125 PF01081 KDPG and KHG aldolase APAC_RS10130 PF00920 Dehydratase family APAC_RS10135 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APAC_RS10140 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APAC_RS10140 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APAC_RS10145 PF00128 Alpha amylase, catalytic domain APAC_RS10155 PF13660 Domain of unknown function (DUF4147) APAC_RS10155 PF05161 MOFRL family APAC_RS10165 PF02548 Ketopantoate hydroxymethyltransferase APAC_RS10170 PF17864 RuvB AAA lid domain APAC_RS10170 PF05491 RuvB C-terminal winged helix domain APAC_RS10170 PF05496 Holliday junction DNA helicase RuvB P-loop domain APAC_RS10175 PF01594 AI-2E family transporter APAC_RS10190 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APAC_RS10200 PF02861 Clp amino terminal domain, pathogenicity island component APAC_RS10200 PF10431 C-terminal, D2-small domain, of ClpB protein APAC_RS10200 PF00004 ATPase family associated with various cellular activities (AAA) APAC_RS10200 PF07724 AAA domain (Cdc48 subfamily) APAC_RS10200 PF17871 AAA lid domain APAC_RS10205 PF02617 ATP-dependent Clp protease adaptor protein ClpS APAC_RS10220 PF00501 AMP-binding enzyme APAC_RS10220 PF13193 AMP-binding enzyme C-terminal domain APAC_RS10225 PF01575 MaoC like domain APAC_RS10245 PF01613 Flavin reductase like domain APAC_RS10275 PF00771 FHIPEP family APAC_RS10280 PF00700 Bacterial flagellin C-terminal helical region APAC_RS10280 PF00669 Bacterial flagellin N-terminal helical region APAC_RS10285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APAC_RS10285 PF18269 T3SS EscN ATPase C-terminal domain APAC_RS10295 PF01312 FlhB HrpN YscU SpaS Family APAC_RS10310 PF00460 Flagella basal body rod protein APAC_RS10310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APAC_RS10315 PF02049 Flagellar hook-basal body complex protein FliE APAC_RS10325 PF10609 NUBPL iron-transfer P-loop NTPase APAC_RS10330 PF00448 SRP54-type protein, GTPase domain APAC_RS10355 PF01618 MotA/TolQ/ExbB proton channel family APAC_RS10360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APAC_RS10380 PF00460 Flagella basal body rod protein APAC_RS10380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APAC_RS10380 PF07559 Flagellar basal body protein FlaE APAC_RS10380 PF07196 Flagellin hook IN motif APAC_RS10385 PF07559 Flagellar basal body protein FlaE APAC_RS10385 PF00460 Flagella basal body rod protein APAC_RS10385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APAC_RS10395 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APAC_RS10405 PF01706 FliG C-terminal domain APAC_RS10405 PF14841 FliG middle domain APAC_RS10405 PF14842 FliG N-terminal domain APAC_RS10410 PF08345 Flagellar M-ring protein C-terminal APAC_RS10410 PF01514 Secretory protein of YscJ/FliF family APAC_RS10415 PF00460 Flagella basal body rod protein APAC_RS10420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APAC_RS10420 PF00460 Flagella basal body rod protein APAC_RS10430 PF00072 Response regulator receiver domain APAC_RS10435 PF00460 Flagella basal body rod protein APAC_RS10435 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APAC_RS10450 PF01782 RimM N-terminal domain APAC_RS10460 PF00886 Ribosomal protein S16 APAC_RS10465 PF00448 SRP54-type protein, GTPase domain APAC_RS10465 PF02978 Signal peptide binding domain APAC_RS10465 PF02881 SRP54-type protein, helical bundle domain APAC_RS10470 PF00849 RNA pseudouridylate synthase APAC_RS10470 PF01479 S4 domain APAC_RS10475 PF02390 Putative methyltransferase APAC_RS10475 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APAC_RS10485 PF01784 NIF3 (NGG1p interacting factor 3) APAC_RS10490 PF02091 Glycyl-tRNA synthetase alpha subunit APAC_RS10500 PF00731 AIR carboxylase APAC_RS10510 PF01136 Peptidase family U32 APAC_RS10515 PF00672 HAMP domain APAC_RS10515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS10515 PF17200 Single Cache domain 2 APAC_RS10515 PF00672 HAMP domain APAC_RS10515 PF17200 Single Cache domain 2 APAC_RS10515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS10520 PF13476 AAA domain APAC_RS10525 PF01513 ATP-NAD kinase APAC_RS10530 PF03144 Elongation factor Tu domain 2 APAC_RS10530 PF03764 Elongation factor G, domain IV APAC_RS10530 PF14492 Elongation Factor G, domain II APAC_RS10530 PF00679 Elongation factor G C-terminus APAC_RS10530 PF00009 Elongation factor Tu GTP binding domain APAC_RS10535 PF00177 Ribosomal protein S7p/S5e APAC_RS10540 PF00164 Ribosomal protein S12/S23 APAC_RS10545 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 APAC_RS10640 PF00149 Calcineurin-like phosphoesterase APAC_RS10670 PF13676 TIR domain APAC_RS10685 PF00872 Transposase, Mutator family APAC_RS10695 PF00989 PAS fold APAC_RS10695 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS10695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS10725 PF00589 Phage integrase family APAC_RS10725 PF13356 Arm DNA-binding domain APAC_RS10740 PF00623 RNA polymerase Rpb1, domain 2 APAC_RS10740 PF05000 RNA polymerase Rpb1, domain 4 APAC_RS10740 PF04998 RNA polymerase Rpb1, domain 5 APAC_RS10740 PF04997 RNA polymerase Rpb1, domain 1 APAC_RS10740 PF04983 RNA polymerase Rpb1, domain 3 APAC_RS10745 PF04565 RNA polymerase Rpb2, domain 3 APAC_RS10745 PF00562 RNA polymerase Rpb2, domain 6 APAC_RS10745 PF10385 RNA polymerase beta subunit external 1 domain APAC_RS10745 PF04563 RNA polymerase beta subunit APAC_RS10745 PF04561 RNA polymerase Rpb2, domain 2 APAC_RS10745 PF04560 RNA polymerase Rpb2, domain 7 APAC_RS10750 PF00542 Ribosomal protein L7/L12 C-terminal domain APAC_RS10750 PF16320 Ribosomal protein L7/L12 dimerisation domain APAC_RS10755 PF00466 Ribosomal protein L10 APAC_RS10760 PF00687 Ribosomal protein L1p/L10e family APAC_RS10765 PF03946 Ribosomal protein L11, N-terminal domain APAC_RS10765 PF00298 Ribosomal protein L11, RNA binding domain APAC_RS10770 PF02357 Transcription termination factor nusG APAC_RS10785 PF00471 Ribosomal protein L33 APAC_RS10790 PF03144 Elongation factor Tu domain 2 APAC_RS10790 PF03143 Elongation factor Tu C-terminal domain APAC_RS10790 PF00009 Elongation factor Tu GTP binding domain APAC_RS10815 PF08245 Mur ligase middle domain APAC_RS10820 PF00953 Glycosyl transferase family 4 APAC_RS10820 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APAC_RS10825 PF01676 Metalloenzyme superfamily APAC_RS10825 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APAC_RS10830 PF00005 ABC transporter APAC_RS10830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APAC_RS10835 PF00912 Transglycosylase APAC_RS10835 PF00905 Penicillin binding protein transpeptidase domain APAC_RS10840 PF00120 Glutamine synthetase, catalytic domain APAC_RS10840 PF03951 Glutamine synthetase, beta-Grasp domain APAC_RS10850 PF07694 5TMR of 5TMR-LYT APAC_RS10850 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS10855 PF02391 MoaE protein APAC_RS10865 PF02621 Menaquinone biosynthesis APAC_RS10870 PF02673 Bacitracin resistance protein BacA APAC_RS10875 PF04101 Glycosyltransferase family 28 C-terminal domain APAC_RS10875 PF03033 Glycosyltransferase family 28 N-terminal domain APAC_RS10880 PF01098 Cell cycle protein APAC_RS10885 PF03717 Penicillin-binding Protein dimerisation domain APAC_RS10885 PF03793 PASTA domain APAC_RS10885 PF00905 Penicillin binding protein transpeptidase domain APAC_RS10890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APAC_RS10930 PF00117 Glutamine amidotransferase class-I APAC_RS10935 PF13416 Bacterial extracellular solute-binding protein APAC_RS10945 PF00005 ABC transporter APAC_RS10945 PF08402 TOBE domain APAC_RS10950 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APAC_RS10955 PF00155 Aminotransferase class I and II APAC_RS10960 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APAC_RS10965 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APAC_RS10970 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APAC_RS10970 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APAC_RS10980 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APAC_RS10980 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APAC_RS10980 PF10531 SLBB domain APAC_RS10985 PF00285 Citrate synthase, C-terminal domain APAC_RS10990 PF00384 Molybdopterin oxidoreductase APAC_RS10990 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APAC_RS10990 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APAC_RS10995 PF00146 NADH dehydrogenase APAC_RS11000 PF12838 4Fe-4S dicluster domain APAC_RS11005 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APAC_RS11010 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APAC_RS11015 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APAC_RS11015 PF00361 Proton-conducting membrane transporter APAC_RS11020 PF00361 Proton-conducting membrane transporter APAC_RS11020 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APAC_RS11025 PF00361 Proton-conducting membrane transporter APAC_RS11030 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APAC_RS11035 PF00890 FAD binding domain APAC_RS11035 PF02910 Fumarate reductase flavoprotein C-term APAC_RS11040 PF13183 4Fe-4S dicluster domain APAC_RS11040 PF13085 2Fe-2S iron-sulfur cluster binding domain APAC_RS11045 PF00350 Dynamin family APAC_RS11050 PF00350 Dynamin family APAC_RS11055 PF01863 Protein of unknown function DUF45 APAC_RS11065 PF00155 Aminotransferase class I and II APAC_RS11070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APAC_RS11070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APAC_RS11110 PF09371 Tex-like protein N-terminal domain APAC_RS11110 PF16921 Tex protein YqgF-like domain APAC_RS11110 PF17674 HHH domain APAC_RS11110 PF00575 S1 RNA binding domain APAC_RS11120 PF00872 Transposase, Mutator family APAC_RS11125 PF09827 CRISPR associated protein Cas2 APAC_RS11130 PF01867 CRISPR associated protein Cas1 APAC_RS11135 PF18541 RuvC endonuclease subdomain 3 APAC_RS11135 PF13395 HNH endonuclease APAC_RS11140 PF01042 Endoribonuclease L-PSP APAC_RS11145 PF00691 OmpA family APAC_RS11145 PF13488 Glycine zipper APAC_RS11160 PF00672 HAMP domain APAC_RS11160 PF02203 Tar ligand binding domain homologue APAC_RS11160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APAC_RS11170 PF13649 Methyltransferase domain APAC_RS11175 PF09382 RQC domain APAC_RS11175 PF16124 RecQ zinc-binding APAC_RS11175 PF00570 HRDC domain APAC_RS11175 PF00271 Helicase conserved C-terminal domain APAC_RS11175 PF00270 DEAD/DEAH box helicase APAC_RS11200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APAC_RS11200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APAC_RS11205 PF00186 Dihydrofolate reductase APAC_RS11210 PF00303 Thymidylate synthase APAC_RS11230 PF00285 Citrate synthase, C-terminal domain APAC_RS11235 PF00330 Aconitase family (aconitate hydratase) APAC_RS11235 PF00694 Aconitase C-terminal domain APAC_RS11240 PF04303 PrpF protein APAC_RS11245 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS11245 PF05230 MASE2 domain APAC_RS11255 PF03900 Porphobilinogen deaminase, C-terminal domain APAC_RS11255 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APAC_RS11265 PF12170 DNA polymerase III tau subunit V interacting with alpha APAC_RS11265 PF12169 DNA polymerase III subunits gamma and tau domain III APAC_RS11270 PF01177 Asp/Glu/Hydantoin racemase APAC_RS11280 PF07497 Rho termination factor, RNA-binding domain APAC_RS11280 PF07498 Rho termination factor, N-terminal domain APAC_RS11280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APAC_RS11285 PF10417 C-terminal domain of 1-Cys peroxiredoxin APAC_RS11285 PF00578 AhpC/TSA family APAC_RS11290 PF00037 4Fe-4S binding domain APAC_RS11295 PF00334 Nucleoside diphosphate kinase APAC_RS11305 PF01783 Ribosomal L32p protein family APAC_RS11310 PF02504 Fatty acid synthesis protein APAC_RS11315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APAC_RS11315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APAC_RS11330 PF01063 Amino-transferase class IV APAC_RS11340 PF00425 chorismate binding enzyme APAC_RS11345 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APAC_RS11345 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APAC_RS11355 PF00202 Aminotransferase class-III APAC_RS11365 PF00224 Pyruvate kinase, barrel domain APAC_RS11365 PF02887 Pyruvate kinase, alpha/beta domain APAC_RS11365 PF00391 PEP-utilising enzyme, mobile domain APAC_RS11385 PF02021 Uncharacterised protein family UPF0102 APAC_RS11390 PF06779 Uncharacterised MFS-type transporter YbfB APAC_RS11395 PF00155 Aminotransferase class I and II APAC_RS11400 PF00484 Carbonic anhydrase APAC_RS11410 PF04055 Radical SAM superfamily APAC_RS11420 PF04028 Domain of unknown function (DUF374) APAC_RS11425 PF04055 Radical SAM superfamily APAC_RS11425 PF00919 Uncharacterized protein family UPF0004 APAC_RS11425 PF01938 TRAM domain APAC_RS11435 PF13184 NusA-like KH domain APAC_RS11435 PF08529 NusA N-terminal domain APAC_RS11440 PF01406 tRNA synthetases class I (C) catalytic domain APAC_RS11440 PF09190 DALR domain APAC_RS11445 PF02028 BCCT, betaine/carnitine/choline family transporter APAC_RS11455 PF01084 Ribosomal protein S18 APAC_RS11460 PF00436 Single-strand binding protein family APAC_RS11465 PF01250 Ribosomal protein S6 APAC_RS11475 PF02623 FliW protein APAC_RS11480 PF00773 RNB domain APAC_RS11485 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APAC_RS11485 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APAC_RS11500 PF06965 Na+/H+ antiporter 1 APAC_RS11505 PF08245 Mur ligase middle domain APAC_RS11505 PF02875 Mur ligase family, glutamate ligase domain APAC_RS11505 PF01225 Mur ligase family, catalytic domain APAC_RS11515 PF00155 Aminotransferase class I and II APAC_RS11540 PF01702 Queuine tRNA-ribosyltransferase APAC_RS11545 PF07992 Pyridine nucleotide-disulphide oxidoreductase APAC_RS11545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APAC_RS11550 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APAC_RS11550 PF00364 Biotin-requiring enzyme APAC_RS11550 PF02817 e3 binding domain APAC_RS11555 PF17831 Pyruvate dehydrogenase E1 component middle domain APAC_RS11555 PF00456 Transketolase, thiamine diphosphate binding domain APAC_RS11560 PF03099 Biotin/lipoate A/B protein ligase family APAC_RS11565 PF04055 Radical SAM superfamily APAC_RS11570 PF02686 Glu-tRNAGln amidotransferase C subunit APAC_RS11575 PF03960 ArsC family APAC_RS11600 PF01474 Class-II DAHP synthetase family APAC_RS11605 PF00923 Transaldolase/Fructose-6-phosphate aldolase APAC_RS11620 PF03652 Holliday junction resolvase APAC_RS11625 PF01648 4'-phosphopantetheinyl transferase superfamily APAC_RS11630 PF00528 Binding-protein-dependent transport system inner membrane component APAC_RS11635 PF02569 Pantoate-beta-alanine ligase APAC_RS11640 PF00919 Uncharacterized protein family UPF0004 APAC_RS11640 PF04055 Radical SAM superfamily APAC_RS11640 PF18693 TRAM domain APAC_RS11645 PF01171 PP-loop family APAC_RS11655 PF02561 Flagellar protein FliS APAC_RS11660 PF07195 Flagellar hook-associated protein 2 C-terminus APAC_RS11660 PF02465 Flagellar hook-associated protein 2 N-terminus APAC_RS11660 PF07196 Flagellin hook IN motif APAC_RS11670 PF02107 Flagellar L-ring protein APAC_RS11695 PF01313 Bacterial export proteins, family 3 APAC_RS11705 PF02119 Flagellar P-ring protein APAC_RS11710 PF02154 Flagellar motor switch protein FliM APAC_RS11710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APAC_RS11720 PF00543 Nitrogen regulatory protein P-II APAC_RS11725 PF00909 Ammonium Transporter Family APAC_RS11730 PF00543 Nitrogen regulatory protein P-II APAC_RS11735 PF00909 Ammonium Transporter Family APAC_RS11745 PF00005 ABC transporter APAC_RS11750 PF00528 Binding-protein-dependent transport system inner membrane component APAC_RS11755 PF00005 ABC transporter APAC_RS11760 PF01568 Molydopterin dinucleotide binding domain APAC_RS11760 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APAC_RS11760 PF00384 Molybdopterin oxidoreductase APAC_RS11765 PF00072 Response regulator receiver domain APAC_RS11765 PF00486 Transcriptional regulatory protein, C terminal APAC_RS11770 PF08447 PAS fold APAC_RS11770 PF00989 PAS fold APAC_RS11770 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS11770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS11780 PF00069 Protein kinase domain APAC_RS11785 PF18267 Rubredoxin NAD+ reductase C-terminal domain APAC_RS11785 PF04324 BFD-like [2Fe-2S] binding domain APAC_RS11785 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APAC_RS11785 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APAC_RS11785 PF07992 Pyridine nucleotide-disulphide oxidoreductase APAC_RS11810 PF00486 Transcriptional regulatory protein, C terminal APAC_RS11810 PF00072 Response regulator receiver domain APAC_RS11830 PF01966 HD domain APAC_RS11830 PF08335 GlnD PII-uridylyltransferase APAC_RS11835 PF00501 AMP-binding enzyme APAC_RS11835 PF01553 Acyltransferase APAC_RS11835 PF13193 AMP-binding enzyme C-terminal domain APAC_RS11845 PF01740 STAS domain APAC_RS11845 PF00916 Sulfate permease family APAC_RS11860 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase APAC_RS11860 PF13746 4Fe-4S dicluster domain APAC_RS11860 PF12801 4Fe-4S binding domain APAC_RS11865 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS11865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS11870 PF00072 Response regulator receiver domain APAC_RS11870 PF04397 LytTr DNA-binding domain APAC_RS11885 PF02417 Chromate transporter APAC_RS11890 PF01451 Low molecular weight phosphotyrosine protein phosphatase APAC_RS11900 PF02659 Putative manganese efflux pump APAC_RS11905 PF02040 Arsenical pump membrane protein APAC_RS11915 PF01022 Bacterial regulatory protein, arsR family APAC_RS11930 PF02779 Transketolase, pyrimidine binding domain APAC_RS11930 PF02780 Transketolase, C-terminal domain APAC_RS11930 PF00456 Transketolase, thiamine diphosphate binding domain APAC_RS11935 PF13493 Domain of unknown function (DUF4118) APAC_RS11935 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS11935 PF02702 Osmosensitive K+ channel His kinase sensor domain APAC_RS11935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS11945 PF13533 Biotin-lipoyl like APAC_RS11950 PF00664 ABC transporter transmembrane region APAC_RS11950 PF00005 ABC transporter APAC_RS11950 PF03412 Peptidase C39 family APAC_RS11960 PF00072 Response regulator receiver domain APAC_RS11960 PF00486 Transcriptional regulatory protein, C terminal APAC_RS11965 PF13333 Integrase core domain APAC_RS11965 PF13276 HTH-like domain APAC_RS11965 PF00665 Integrase core domain APAC_RS11970 PF01527 Transposase APAC_RS11980 PF01734 Patatin-like phospholipase APAC_RS11990 PF01594 AI-2E family transporter APAC_RS11995 PF02405 Permease MlaE APAC_RS12000 PF09383 NIL domain APAC_RS12000 PF00005 ABC transporter APAC_RS12015 PF07690 Major Facilitator Superfamily APAC_RS12025 PF01734 Patatin-like phospholipase APAC_RS12035 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS12040 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APAC_RS12045 PF00313 'Cold-shock' DNA-binding domain APAC_RS12065 PF00920 Dehydratase family APAC_RS12070 PF13180 PDZ domain APAC_RS12070 PF17820 PDZ domain APAC_RS12075 PF00072 Response regulator receiver domain APAC_RS12075 PF00486 Transcriptional regulatory protein, C terminal APAC_RS12090 PF03186 CobD/Cbib protein APAC_RS12095 PF07685 CobB/CobQ-like glutamine amidotransferase domain APAC_RS12095 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APAC_RS12110 PF00672 HAMP domain APAC_RS12110 PF13755 Sensor N-terminal transmembrane domain APAC_RS12110 PF00512 His Kinase A (phospho-acceptor) domain APAC_RS12110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS12110 PF13756 Stimulus-sensing domain APAC_RS12130 PF00155 Aminotransferase class I and II APAC_RS12145 PF01914 MarC family integral membrane protein APAC_RS12150 PF02277 Phosphoribosyltransferase APAC_RS12155 PF02683 Cytochrome C biogenesis protein transmembrane region APAC_RS12155 PF11412 Disulphide bond corrector protein DsbC APAC_RS12160 PF00085 Thioredoxin APAC_RS12170 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APAC_RS12175 PF18030 RimK PreATP-grasp domain APAC_RS12175 PF08443 RimK-like ATP-grasp domain APAC_RS12190 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS12190 PF10442 FIST C domain APAC_RS12190 PF00563 EAL domain APAC_RS12190 PF08495 FIST N domain APAC_RS12195 PF02666 Phosphatidylserine decarboxylase APAC_RS12215 PF00012 Hsp70 protein APAC_RS12220 PF01025 GrpE APAC_RS12225 PF01628 HrcA protein C terminal domain APAC_RS12240 PF00072 Response regulator receiver domain APAC_RS12240 PF00158 Sigma-54 interaction domain APAC_RS12245 PF08448 PAS fold APAC_RS12245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APAC_RS12245 PF08447 PAS fold APAC_RS12250 PF01416 tRNA pseudouridine synthase APAC_RS12260 PF01478 Type IV leader peptidase family APAC_RS12260 PF06750 Bacterial Peptidase A24 N-terminal domain APAC_RS12265 PF01255 Putative undecaprenyl diphosphate synthase APAC_RS12270 PF02441 Flavoprotein APAC_RS12270 PF04127 DNA / pantothenate metabolism flavoprotein APAC_RS12275 PF12804 MobA-like NTP transferase domain APAC_RS12275 PF14602 Hexapeptide repeat of succinyl-transferase APAC_RS12285 PF00270 DEAD/DEAH box helicase APAC_RS12285 PF00271 Helicase conserved C-terminal domain APAC_RS12285 PF17191 RecG wedge domain APAC_RS12290 PF05958 tRNA (Uracil-5-)-methyltransferase APAC_RS12295 PF00669 Bacterial flagellin N-terminal helical region APAC_RS12295 PF07196 Flagellin hook IN motif APAC_RS12295 PF00700 Bacterial flagellin C-terminal helical region APAC_RS12300 PF00700 Bacterial flagellin C-terminal helical region APAC_RS12300 PF00669 Bacterial flagellin N-terminal helical region APAC_RS12300 PF07196 Flagellin hook IN motif APAC_RS12315 PF13472 GDSL-like Lipase/Acylhydrolase family APAC_RS12315 PF02348 Cytidylyltransferase APAC_RS12320 PF00483 Nucleotidyl transferase APAC_RS12325 PF02350 UDP-N-acetylglucosamine 2-epimerase APAC_RS12330 PF03102 NeuB family APAC_RS12330 PF08666 SAF domain APAC_RS12340 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APAC_RS12345 PF02719 Polysaccharide biosynthesis protein APAC_RS12355 PF00154 recA bacterial DNA recombination protein APAC_RS12360 PF03952 Enolase, N-terminal domain APAC_RS12360 PF00113 Enolase, C-terminal TIM barrel domain APAC_RS12375 PF00999 Sodium/hydrogen exchanger family APAC_RS12375 PF02080 TrkA-C domain APAC_RS12375 PF02254 TrkA-N domain APAC_RS12380 PF04055 Radical SAM superfamily APAC_RS12380 PF06968 Biotin and Thiamin Synthesis associated domain APAC_RS12390 PF01131 DNA topoisomerase APAC_RS12390 PF01751 Toprim domain APAC_RS12390 PF13368 Topoisomerase C-terminal repeat APAC_RS12395 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APAC_RS12400 PF02621 Menaquinone biosynthesis APAC_RS12410 PF00361 Proton-conducting membrane transporter APAC_RS12415 PF00361 Proton-conducting membrane transporter APAC_RS12415 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APAC_RS12420 PF00361 Proton-conducting membrane transporter APAC_RS12420 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APAC_RS12425 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APAC_RS12430 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APAC_RS12435 PF12838 4Fe-4S dicluster domain APAC_RS12440 PF00146 NADH dehydrogenase APAC_RS12445 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APAC_RS12445 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APAC_RS12445 PF13237 4Fe-4S dicluster domain APAC_RS12445 PF00384 Molybdopterin oxidoreductase APAC_RS12445 PF01568 Molydopterin dinucleotide binding domain APAC_RS12460 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APAC_RS12465 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APAC_RS12470 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APAC_RS12475 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APAC_RS12485 PF17758 Proteasomal ATPase OB N-terminal domain APAC_RS12485 PF00004 ATPase family associated with various cellular activities (AAA) APAC_RS12485 PF16450 Proteasomal ATPase OB C-terminal domain APAC_RS12500 PF01261 Xylose isomerase-like TIM barrel APAC_RS12505 PF07992 Pyridine nucleotide-disulphide oxidoreductase APAC_RS12510 PF10442 FIST C domain APAC_RS12510 PF00990 Diguanylate cyclase, GGDEF domain APAC_RS12510 PF08495 FIST N domain APAC_RS12510 PF00563 EAL domain APAC_RS12520 PF02677 Epoxyqueuosine reductase QueH APAC_RS12525 PF02684 Lipid-A-disaccharide synthetase APAC_RS12530 PF07977 FabA-like domain APAC_RS12535 PF00132 Bacterial transferase hexapeptide (six repeats) APAC_RS12535 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APAC_RS12540 PF10431 C-terminal, D2-small domain, of ClpB protein APAC_RS12540 PF06689 ClpX C4-type zinc finger APAC_RS12540 PF07724 AAA domain (Cdc48 subfamily) APAC_RS12555 PF00677 Lumazine binding domain APAC_RS12560 PF13932 GidA associated domain APAC_RS12560 PF01134 Glucose inhibited division protein A APAC_RS12585 PF00872 Transposase, Mutator family APAC_RS12590 PF13333 Integrase core domain APAC_RS12590 PF13276 HTH-like domain APAC_RS12590 PF00665 Integrase core domain APAC_RS12595 PF01527 Transposase APAC_RS12600 PF00239 Resolvase, N terminal domain APAC_RS12600 PF02796 Helix-turn-helix domain of resolvase APAC_RS12610 PF01654 Cytochrome bd terminal oxidase subunit I APAC_RS12625 PF00578 AhpC/TSA family APAC_RS12630 PF01545 Cation efflux family APAC_RS12635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APAC_RS12635 PF03466 LysR substrate binding domain APAC_RS12645 PF00872 Transposase, Mutator family APAC_RS12675 PF06418 CTP synthase N-terminus APAC_RS12675 PF00117 Glutamine amidotransferase class-I APAC_RS12680 PF01368 DHH family APAC_RS12680 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APAC_RS12680 PF02272 DHHA1 domain APAC_RS12680 PF17768 RecJ OB domain APAC_RS12710 PF02811 PHP domain APAC_RS12710 PF14579 Helix-hairpin-helix motif APAC_RS12710 PF07733 Bacterial DNA polymerase III alpha NTPase domain APAC_RS12710 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APAC_RS12715 PF01975 Survival protein SurE APAC_RS12730 PF01967 MoaC family APAC_RS12735 PF01165 Ribosomal protein S21 APAC_RS12740 PF01695 IstB-like ATP binding protein APAC_RS12745 PF00665 Integrase core domain APAC_RS12790 PF01027 Inhibitor of apoptosis-promoting Bax1 APAC_RS12795 PF17792 ThiD2 family APAC_RS12795 PF02581 Thiamine monophosphate synthase APAC_RS12805 PF03840 Preprotein translocase SecG subunit APAC_RS12810 PF01765 Ribosome recycling factor APAC_RS12815 PF00156 Phosphoribosyl transferase domain APAC_RS12845 PF00924 Mechanosensitive ion channel APAC_RS12845 PF12795 Mechanosensitive ion channel porin domain APAC_RS12845 PF12794 Mechanosensitive ion channel inner membrane domain 1 APAC_RS12850 PF00571 CBS domain APAC_RS12850 PF03448 MgtE intracellular N domain APAC_RS12850 PF01769 Divalent cation transporter APAC_RS12855 PF01544 CorA-like Mg2+ transporter protein APAC_RS12860 PF03883 Peroxide stress protein YaaA APAC_RS12865 PF02810 SEC-C motif APAC_RS12880 PF01979 Amidohydrolase family APAC_RS12885 PF01625 Peptide methionine sulfoxide reductase APAC_RS12890 PF01641 SelR domain APAC_RS12905 PF03167 Uracil DNA glycosylase superfamily APAC_RS12910 PF00171 Aldehyde dehydrogenase family APAC_RS12915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APAC_RS12915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APAC_RS12915 PF00205 Thiamine pyrophosphate enzyme, central domain APAC_RS12920 PF04011 LemA family APAC_RS12935 PF13419 Haloacid dehalogenase-like hydrolase APAC_RS12955 PF07690 Major Facilitator Superfamily APAC_RS12960 PF07690 Major Facilitator Superfamily APAC_RS12965 PF03600 Citrate transporter APAC_RS12975 PF00875 DNA photolyase APAC_RS12975 PF03441 FAD binding domain of DNA photolyase APAC_RS12995 PF00313 'Cold-shock' DNA-binding domain APAC_RS13005 PF00313 'Cold-shock' DNA-binding domain APAC_RS13025 PF01053 Cys/Met metabolism PLP-dependent enzyme APAC_RS13030 PF02082 Transcriptional regulator APAC_RS13035 PF00291 Pyridoxal-phosphate dependent enzyme APAC_RS13045 PF01507 Phosphoadenosine phosphosulfate reductase family APAC_RS13050 PF01507 Phosphoadenosine phosphosulfate reductase family APAC_RS13055 PF00009 Elongation factor Tu GTP binding domain APAC_RS13065 PF00266 Aminotransferase class-V APAC_RS13070 PF00149 Calcineurin-like phosphoesterase APAC_RS13085 PF00011 Hsp20/alpha crystallin family APAC_RS13095 PF14403 Circularly permuted ATP-grasp type 2 APAC_RS13100 PF01841 Transglutaminase-like superfamily APAC_RS13100 PF08379 Bacterial transglutaminase-like N-terminal region APAC_RS13110 PF14403 Circularly permuted ATP-grasp type 2 APAC_RS13115 PF03144 Elongation factor Tu domain 2 APAC_RS13115 PF00679 Elongation factor G C-terminus APAC_RS13115 PF00009 Elongation factor Tu GTP binding domain APAC_RS13145 PF00486 Transcriptional regulatory protein, C terminal APAC_RS13145 PF00072 Response regulator receiver domain APAC_RS13160 PF04960 Glutaminase APAC_RS13180 PF07992 Pyridine nucleotide-disulphide oxidoreductase APAC_RS13180 PF10518 TAT (twin-arginine translocation) pathway signal sequence APAC_RS13180 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding APAC_RS13190 PF03458 UPF0126 domain APAC_RS13200 PF00551 Formyl transferase APAC_RS13205 PF02075 Crossover junction endodeoxyribonuclease RuvC