locus-tag class description AFL94_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix AFL94_RS00005 PF00308 Bacterial dnaA protein AFL94_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AFL94_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AFL94_RS00010 PF02767 DNA polymerase III beta subunit, central domain AFL94_RS00015 PF02463 RecF/RecN/SMC N terminal domain AFL94_RS00020 PF05258 Dna[CI] antecedent, DciA AFL94_RS00025 PF00204 DNA gyrase B AFL94_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus AFL94_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS00025 PF01751 Toprim domain AFL94_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller AFL94_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A AFL94_RS00035 PF12089 Transmembrane domain of unknown function (DUF3566) AFL94_RS00055 PF13439 Glycosyltransferase Family 4 AFL94_RS00055 PF00534 Glycosyl transferases group 1 AFL94_RS00060 PF01758 Sodium Bile acid symporter family AFL94_RS00075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFL94_RS00080 PF01694 Rhomboid family AFL94_RS00085 PF01810 LysE type translocator AFL94_RS00090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS00090 PF03466 LysR substrate binding domain AFL94_RS00095 PF00893 Small Multidrug Resistance protein AFL94_RS00100 PF06781 Cell division protein CrgA AFL94_RS00105 PF04203 Sortase domain AFL94_RS00110 PF00117 Glutamine amidotransferase class-I AFL94_RS00115 PF03793 PASTA domain AFL94_RS00115 PF00069 Protein kinase domain AFL94_RS00120 PF00069 Protein kinase domain AFL94_RS00125 PF00905 Penicillin binding protein transpeptidase domain AFL94_RS00130 PF01098 Cell cycle protein AFL94_RS00140 PF16697 Inner membrane component of T3SS, cytoplasmic domain AFL94_RS00165 PF00356 Bacterial regulatory proteins, lacI family AFL94_RS00170 PF01156 Inosine-uridine preferring nucleoside hydrolase AFL94_RS00175 PF01738 Dienelactone hydrolase family AFL94_RS00190 PF00378 Enoyl-CoA hydratase/isomerase AFL94_RS00200 PF00294 pfkB family carbohydrate kinase AFL94_RS00220 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFL94_RS00220 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFL94_RS00220 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFL94_RS00225 PF00083 Sugar (and other) transporter AFL94_RS00230 PF00860 Permease family AFL94_RS00235 PF08543 Phosphomethylpyrimidine kinase AFL94_RS00235 PF03070 TENA/THI-4/PQQC family AFL94_RS00235 PF02581 Thiamine monophosphate synthase AFL94_RS00240 PF02581 Thiamine monophosphate synthase AFL94_RS00245 PF02110 Hydroxyethylthiazole kinase family AFL94_RS00260 PF00171 Aldehyde dehydrogenase family AFL94_RS00265 PF00324 Amino acid permease AFL94_RS00270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_RS00270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_RS00270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_RS00270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_RS00285 PF13443 Cro/C1-type HTH DNA-binding domain AFL94_RS00290 PF00854 POT family AFL94_RS00295 PF01425 Amidase AFL94_RS00305 PF00800 Prephenate dehydratase AFL94_RS00305 PF01842 ACT domain AFL94_RS00310 PF00781 Diacylglycerol kinase catalytic domain AFL94_RS00315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_RS00315 PF02403 Seryl-tRNA synthetase N-terminal domain AFL94_RS00345 PF01470 Pyroglutamyl peptidase AFL94_RS00350 PF02646 RmuC family AFL94_RS00360 PF00719 Inorganic pyrophosphatase AFL94_RS00365 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AFL94_RS00375 PF09179 TilS substrate binding domain AFL94_RS00375 PF01171 PP-loop family AFL94_RS00380 PF00156 Phosphoribosyl transferase domain AFL94_RS00385 PF17862 AAA+ lid domain AFL94_RS00385 PF01434 Peptidase family M41 AFL94_RS00385 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_RS00390 PF01227 GTP cyclohydrolase I AFL94_RS00395 PF00809 Pterin binding enzyme AFL94_RS00400 PF02152 Dihydroneopterin aldolase AFL94_RS00425 PF02569 Pantoate-beta-alanine ligase AFL94_RS00450 PF01381 Helix-turn-helix AFL94_RS00475 PF00106 short chain dehydrogenase AFL94_RS00480 PF05649 Peptidase family M13 AFL94_RS00480 PF01431 Peptidase family M13 AFL94_RS00485 PF00152 tRNA synthetases class II (D, K and N) AFL94_RS00485 PF01336 OB-fold nucleic acid binding domain AFL94_RS00490 PF11774 Lsr2 AFL94_RS00495 PF07724 AAA domain (Cdc48 subfamily) AFL94_RS00495 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_RS00495 PF02861 Clp amino terminal domain, pathogenicity island component AFL94_RS00495 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_RS00495 PF17871 AAA lid domain AFL94_RS00515 PF01965 DJ-1/PfpI family AFL94_RS00515 PF12833 Helix-turn-helix domain AFL94_RS00525 PF00583 Acetyltransferase (GNAT) family AFL94_RS00535 PF00730 HhH-GPD superfamily base excision DNA repair protein AFL94_RS00535 PF00633 Helix-hairpin-helix motif AFL94_RS00535 PF10576 Iron-sulfur binding domain of endonuclease III AFL94_RS00545 PF00633 Helix-hairpin-helix motif AFL94_RS00545 PF02457 DisA bacterial checkpoint controller nucleotide-binding AFL94_RS00545 PF10635 DisA bacterial checkpoint controller linker region AFL94_RS00550 PF06745 KaiC AFL94_RS00550 PF18073 Rubredoxin metal binding domain AFL94_RS00560 PF12849 PBP superfamily domain AFL94_RS00565 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS00570 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS00575 PF00005 ABC transporter AFL94_RS00590 PF01384 Phosphate transporter family AFL94_RS00620 PF00561 alpha/beta hydrolase fold AFL94_RS00640 PF00005 ABC transporter AFL94_RS00640 PF16326 ABC transporter C-terminal domain AFL94_RS00640 PF12848 ABC transporter AFL94_RS00645 PF01209 ubiE/COQ5 methyltransferase family AFL94_RS00665 PF00171 Aldehyde dehydrogenase family AFL94_RS00670 PF00107 Zinc-binding dehydrogenase AFL94_RS00670 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_RS00680 PF06441 Epoxide hydrolase N terminus AFL94_RS00700 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain AFL94_RS00700 PF01113 Dihydrodipicolinate reductase, N-terminus AFL94_RS00705 PF02583 Metal-sensitive transcriptional repressor AFL94_RS00710 PF00085 Thioredoxin AFL94_RS00725 PF00753 Metallo-beta-lactamase superfamily AFL94_RS00725 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFL94_RS00745 PF01565 FAD binding domain AFL94_RS00745 PF02913 FAD linked oxidases, C-terminal domain AFL94_RS00755 PF01475 Ferric uptake regulator family AFL94_RS00765 PF08338 Domain of unknown function (DUF1731) AFL94_RS00765 PF01370 NAD dependent epimerase/dehydratase family AFL94_RS00785 PF04030 D-arabinono-1,4-lactone oxidase AFL94_RS00785 PF01565 FAD binding domain AFL94_RS00820 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFL94_RS00820 PF02272 DHHA1 domain AFL94_RS00820 PF01411 tRNA synthetases class II (A) AFL94_RS00840 PF01910 Thiamine-binding protein AFL94_RS00845 PF01596 O-methyltransferase AFL94_RS00870 PF00860 Permease family AFL94_RS00875 PF00582 Universal stress protein family AFL94_RS00880 PF00877 NlpC/P60 family AFL94_RS00880 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AFL94_RS00920 PF00378 Enoyl-CoA hydratase/isomerase AFL94_RS00925 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_RS00925 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFL94_RS00935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS00935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS00935 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS00960 PF02540 NAD synthase AFL94_RS00970 PF00156 Phosphoribosyl transferase domain AFL94_RS00985 PF00005 ABC transporter AFL94_RS00995 PF13344 Haloacid dehalogenase-like hydrolase AFL94_RS01000 PF00588 SpoU rRNA Methylase family AFL94_RS01000 PF02527 rRNA small subunit methyltransferase G AFL94_RS01005 PF01551 Peptidase family M23 AFL94_RS01010 PF01116 Fructose-bisphosphate aldolase class-II AFL94_RS01020 PF00069 Protein kinase domain AFL94_RS01075 PF00072 Response regulator receiver domain AFL94_RS01075 PF00486 Transcriptional regulatory protein, C terminal AFL94_RS01080 PF00512 His Kinase A (phospho-acceptor) domain AFL94_RS01080 PF18719 ArlS sensor domain AFL94_RS01080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS01090 PF01037 Lrp/AsnC ligand binding domain AFL94_RS01095 PF00266 Aminotransferase class-V AFL94_RS01100 PF00324 Amino acid permease AFL94_RS01110 PF00265 Thymidine kinase AFL94_RS01120 PF07722 Peptidase C26 AFL94_RS01125 PF00909 Ammonium Transporter Family AFL94_RS01130 PF00543 Nitrogen regulatory protein P-II AFL94_RS01145 PF01546 Peptidase family M20/M25/M40 AFL94_RS01150 PF01266 FAD dependent oxidoreductase AFL94_RS01155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS01155 PF03466 LysR substrate binding domain AFL94_RS01165 PF00892 EamA-like transporter family AFL94_RS01180 PF00709 Adenylosuccinate synthetase AFL94_RS01190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_RS01190 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_RS01190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS01195 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_RS01195 PF01434 Peptidase family M41 AFL94_RS01195 PF06480 FtsH Extracellular AFL94_RS01195 PF17862 AAA+ lid domain AFL94_RS01215 PF01522 Polysaccharide deacetylase AFL94_RS01215 PF11738 Protein of unknown function (DUF3298) AFL94_RS01215 PF13739 Deacetylase PdaC AFL94_RS01230 PF02896 PEP-utilising enzyme, TIM barrel domain AFL94_RS01230 PF05524 PEP-utilising enzyme, N-terminal AFL94_RS01230 PF00391 PEP-utilising enzyme, mobile domain AFL94_RS01235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFL94_RS01235 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFL94_RS01240 PF00294 pfkB family carbohydrate kinase AFL94_RS01245 PF08220 DeoR-like helix-turn-helix domain AFL94_RS01245 PF00455 DeoR C terminal sensor domain AFL94_RS01250 PF01522 Polysaccharide deacetylase AFL94_RS01255 PF01032 FecCD transport family AFL94_RS01260 PF01032 FecCD transport family AFL94_RS01265 PF01497 Periplasmic binding protein AFL94_RS01270 PF13380 CoA binding domain AFL94_RS01275 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_RS01280 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_RS01285 PF04545 Sigma-70, region 4 AFL94_RS01285 PF04542 Sigma-70 region 2 AFL94_RS01290 PF12833 Helix-turn-helix domain AFL94_RS01290 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFL94_RS01290 PF02805 Metal binding domain of Ada AFL94_RS01290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFL94_RS01295 PF00141 Peroxidase AFL94_RS01300 PF01475 Ferric uptake regulator family AFL94_RS01305 PF02028 BCCT, betaine/carnitine/choline family transporter AFL94_RS01310 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS01310 PF16177 Acetyl-coenzyme A synthetase N-terminus AFL94_RS01310 PF00501 AMP-binding enzyme AFL94_RS01325 PF00005 ABC transporter AFL94_RS01335 PF00296 Luciferase-like monooxygenase AFL94_RS01360 PF04545 Sigma-70, region 4 AFL94_RS01360 PF04542 Sigma-70 region 2 AFL94_RS01365 PF05368 NmrA-like family AFL94_RS01370 PF01126 Heme oxygenase AFL94_RS01375 PF00005 ABC transporter AFL94_RS01375 PF09383 NIL domain AFL94_RS01380 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS01385 PF03180 NLPA lipoprotein AFL94_RS01390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS01390 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS01390 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS01395 PF00296 Luciferase-like monooxygenase AFL94_RS01400 PF13380 CoA binding domain AFL94_RS01405 PF04237 YjbR AFL94_RS01420 PF17936 Bacterial Ig domain AFL94_RS01420 PF00149 Calcineurin-like phosphoesterase AFL94_RS01420 PF02872 5'-nucleotidase, C-terminal domain AFL94_RS01450 PF00296 Luciferase-like monooxygenase AFL94_RS01460 PF08274 PhnA Zinc-Ribbon AFL94_RS01460 PF03831 PhnA domain AFL94_RS01475 PF00586 AIR synthase related protein, N-terminal domain AFL94_RS01475 PF02769 AIR synthase related protein, C-terminal domain AFL94_RS01475 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFL94_RS01485 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AFL94_RS01500 PF05958 tRNA (Uracil-5-)-methyltransferase AFL94_RS01505 PF00999 Sodium/hydrogen exchanger family AFL94_RS01520 PF04978 Protein of unknown function (DUF664) AFL94_RS01525 PF03600 Citrate transporter AFL94_RS01530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS01530 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFL94_RS01530 PF00989 PAS fold AFL94_RS01530 PF17203 Single cache domain 3 AFL94_RS01535 PF00072 Response regulator receiver domain AFL94_RS01535 PF12431 Transcriptional regulator AFL94_RS01545 PF13840 ACT domain AFL94_RS01545 PF01842 ACT domain AFL94_RS01545 PF00696 Amino acid kinase family AFL94_RS01560 PF07690 Major Facilitator Superfamily AFL94_RS01565 PF13662 Toprim domain AFL94_RS01565 PF02132 RecR protein AFL94_RS01570 PF12169 DNA polymerase III subunits gamma and tau domain III AFL94_RS01575 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFL94_RS01595 PF00072 Response regulator receiver domain AFL94_RS01595 PF00486 Transcriptional regulatory protein, C terminal AFL94_RS01620 PF06912 Protein of unknown function (DUF1275) AFL94_RS01625 PF00324 Amino acid permease AFL94_RS01630 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_RS01640 PF01274 Malate synthase AFL94_RS01645 PF00463 Isocitrate lyase family AFL94_RS01650 PF07690 Major Facilitator Superfamily AFL94_RS01655 PF07969 Amidohydrolase family AFL94_RS01660 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFL94_RS01660 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFL94_RS01665 PF01381 Helix-turn-helix AFL94_RS01670 PF00582 Universal stress protein family AFL94_RS01675 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS01675 PF00155 Aminotransferase class I and II AFL94_RS01680 PF00842 Alanine racemase, C-terminal domain AFL94_RS01680 PF01168 Alanine racemase, N-terminal domain AFL94_RS01685 PF00202 Aminotransferase class-III AFL94_RS01690 PF01515 Phosphate acetyl/butaryl transferase AFL94_RS01695 PF13520 Amino acid permease AFL94_RS01705 PF07728 AAA domain (dynein-related subfamily) AFL94_RS01705 PF08406 CbbQ/NirQ/NorQ C-terminal AFL94_RS01705 PF12556 Cobaltochelatase CobS subunit N terminal AFL94_RS01710 PF01614 Bacterial transcriptional regulator AFL94_RS01710 PF09339 IclR helix-turn-helix domain AFL94_RS01715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_RS01715 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_RS01715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS01745 PF07724 AAA domain (Cdc48 subfamily) AFL94_RS01745 PF17871 AAA lid domain AFL94_RS01745 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_RS01745 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_RS01745 PF02861 Clp amino terminal domain, pathogenicity island component AFL94_RS01750 PF00072 Response regulator receiver domain AFL94_RS01750 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS01755 PF07730 Histidine kinase AFL94_RS01760 PF00881 Nitroreductase family AFL94_RS01770 PF01266 FAD dependent oxidoreductase AFL94_RS01785 PF13438 Domain of unknown function (DUF4113) AFL94_RS01785 PF11799 impB/mucB/samB family C-terminal domain AFL94_RS01785 PF00817 impB/mucB/samB family AFL94_RS01790 PF00933 Glycosyl hydrolase family 3 N terminal domain AFL94_RS01795 PF00082 Subtilase family AFL94_RS01795 PF00746 LPXTG cell wall anchor motif AFL94_RS01795 PF06280 Fn3-like domain AFL94_RS01795 PF02225 PA domain AFL94_RS01805 PF08543 Phosphomethylpyrimidine kinase AFL94_RS01825 PF00005 ABC transporter AFL94_RS01835 PF01702 Queuine tRNA-ribosyltransferase AFL94_RS01850 PF07690 Major Facilitator Superfamily AFL94_RS01855 PF00106 short chain dehydrogenase AFL94_RS01865 PF00849 RNA pseudouridylate synthase AFL94_RS01870 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFL94_RS01870 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFL94_RS01875 PF00270 DEAD/DEAH box helicase AFL94_RS01875 PF00271 Helicase conserved C-terminal domain AFL94_RS01875 PF08494 DEAD/H associated AFL94_RS01880 PF02590 Predicted SPOUT methyltransferase AFL94_RS01885 PF01569 PAP2 superfamily AFL94_RS01890 PF01614 Bacterial transcriptional regulator AFL94_RS01890 PF09339 IclR helix-turn-helix domain AFL94_RS01895 PF00491 Arginase family AFL94_RS01900 PF03616 Sodium/glutamate symporter AFL94_RS01905 PF01842 ACT domain AFL94_RS01905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_RS01905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFL94_RS01920 PF00005 ABC transporter AFL94_RS01945 PF02627 Carboxymuconolactone decarboxylase family AFL94_RS01955 PF00206 Lyase AFL94_RS01955 PF10397 Adenylosuccinate lyase C-terminus AFL94_RS01965 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AFL94_RS01965 PF00775 Dioxygenase AFL94_RS01970 PF01494 FAD binding domain AFL94_RS01975 PF03447 Homoserine dehydrogenase, NAD binding domain AFL94_RS01975 PF01958 Domain of unknown function DUF108 AFL94_RS01985 PF07690 Major Facilitator Superfamily AFL94_RS01990 PF00108 Thiolase, N-terminal domain AFL94_RS01990 PF02803 Thiolase, C-terminal domain AFL94_RS01995 PF01144 Coenzyme A transferase AFL94_RS02000 PF01144 Coenzyme A transferase AFL94_RS02005 PF01614 Bacterial transcriptional regulator AFL94_RS02005 PF09339 IclR helix-turn-helix domain AFL94_RS02030 PF03009 Glycerophosphoryl diester phosphodiesterase family AFL94_RS02035 PF00994 Probable molybdopterin binding domain AFL94_RS02035 PF01967 MoaC family AFL94_RS02040 PF01967 MoaC family AFL94_RS02045 PF03454 MoeA C-terminal region (domain IV) AFL94_RS02045 PF03453 MoeA N-terminal region (domain I and II) AFL94_RS02045 PF00994 Probable molybdopterin binding domain AFL94_RS02055 PF00899 ThiF family AFL94_RS02055 PF00581 Rhodanese-like domain AFL94_RS02060 PF02391 MoaE protein AFL94_RS02070 PF04978 Protein of unknown function (DUF664) AFL94_RS02080 PF06463 Molybdenum Cofactor Synthesis C AFL94_RS02080 PF04055 Radical SAM superfamily AFL94_RS02090 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS02095 PF03459 TOBE domain AFL94_RS02095 PF00005 ABC transporter AFL94_RS02100 PF00994 Probable molybdopterin binding domain AFL94_RS02100 PF03454 MoeA C-terminal region (domain IV) AFL94_RS02100 PF03453 MoeA N-terminal region (domain I and II) AFL94_RS02105 PF12804 MobA-like NTP transferase domain AFL94_RS02120 PF02665 Nitrate reductase gamma subunit AFL94_RS02120 PF02613 Nitrate reductase delta subunit AFL94_RS02120 PF00384 Molybdopterin oxidoreductase AFL94_RS02125 PF00384 Molybdopterin oxidoreductase AFL94_RS02125 PF02665 Nitrate reductase gamma subunit AFL94_RS02125 PF02613 Nitrate reductase delta subunit AFL94_RS02130 PF14711 Respiratory nitrate reductase beta C-terminal AFL94_RS02130 PF13247 4Fe-4S dicluster domain AFL94_RS02135 PF00384 Molybdopterin oxidoreductase AFL94_RS02135 PF01568 Molydopterin dinucleotide binding domain AFL94_RS02140 PF07690 Major Facilitator Superfamily AFL94_RS02145 PF00293 NUDIX domain AFL94_RS02160 PF04226 Transglycosylase associated protein AFL94_RS02170 PF14437 MafB19-like deaminase AFL94_RS02180 PF00512 His Kinase A (phospho-acceptor) domain AFL94_RS02180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS02180 PF00672 HAMP domain AFL94_RS02185 PF00486 Transcriptional regulatory protein, C terminal AFL94_RS02185 PF00072 Response regulator receiver domain AFL94_RS02190 PF00486 Transcriptional regulatory protein, C terminal AFL94_RS02190 PF00072 Response regulator receiver domain AFL94_RS02205 PF00005 ABC transporter AFL94_RS02205 PF00664 ABC transporter transmembrane region AFL94_RS02205 PF03412 Peptidase C39 family AFL94_RS02210 PF08361 MAATS-type transcriptional repressor, C-terminal region AFL94_RS02210 PF00440 Bacterial regulatory proteins, tetR family AFL94_RS02235 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS02240 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS02245 PF00232 Glycosyl hydrolase family 1 AFL94_RS02250 PF00356 Bacterial regulatory proteins, lacI family AFL94_RS02270 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AFL94_RS02270 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AFL94_RS02275 PF07690 Major Facilitator Superfamily AFL94_RS02285 PF12697 Alpha/beta hydrolase family AFL94_RS02290 PF00970 Oxidoreductase FAD-binding domain AFL94_RS02290 PF00042 Globin AFL94_RS02290 PF00175 Oxidoreductase NAD-binding domain AFL94_RS02295 PF02082 Transcriptional regulator AFL94_RS02305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_RS02305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_RS02305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_RS02305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_RS02310 PF00270 DEAD/DEAH box helicase AFL94_RS02310 PF16124 RecQ zinc-binding AFL94_RS02310 PF00271 Helicase conserved C-terminal domain AFL94_RS02310 PF00570 HRDC domain AFL94_RS02310 PF09382 RQC domain AFL94_RS02325 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AFL94_RS02325 PF00326 Prolyl oligopeptidase family AFL94_RS02340 PF00107 Zinc-binding dehydrogenase AFL94_RS02340 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_RS02345 PF02554 Carbon starvation protein CstA AFL94_RS02345 PF13722 5TM C-terminal transporter carbon starvation CstA AFL94_RS02360 PF00248 Aldo/keto reductase family AFL94_RS02380 PF00561 alpha/beta hydrolase fold AFL94_RS02385 PF12170 DNA polymerase III tau subunit V interacting with alpha AFL94_RS02385 PF12169 DNA polymerase III subunits gamma and tau domain III AFL94_RS02385 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AFL94_RS02390 PF02223 Thymidylate kinase AFL94_RS02395 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_RS02405 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_RS02415 PF01895 PhoU domain AFL94_RS02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS02420 PF00512 His Kinase A (phospho-acceptor) domain AFL94_RS02425 PF00486 Transcriptional regulatory protein, C terminal AFL94_RS02425 PF00072 Response regulator receiver domain AFL94_RS02435 PF02559 CarD-like/TRCF domain AFL94_RS02440 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFL94_RS02440 PF02542 YgbB family AFL94_RS02445 PF09190 DALR domain AFL94_RS02445 PF01406 tRNA synthetases class I (C) catalytic domain AFL94_RS02450 PF00588 SpoU rRNA Methylase family AFL94_RS02450 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFL94_RS02470 PF02913 FAD linked oxidases, C-terminal domain AFL94_RS02470 PF01565 FAD binding domain AFL94_RS02510 PF00005 ABC transporter AFL94_RS02510 PF17912 MalK OB fold domain AFL94_RS02515 PF02358 Trehalose-phosphatase AFL94_RS02515 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFL94_RS02515 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFL94_RS02515 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFL94_RS02520 PF00982 Glycosyltransferase family 20 AFL94_RS02540 PF00665 Integrase core domain AFL94_RS02540 PF13276 HTH-like domain AFL94_RS02540 PF13333 Integrase core domain AFL94_RS02545 PF01527 Transposase AFL94_RS02560 PF05661 Protein of unknown function (DUF808) AFL94_RS02565 PF02384 N-6 DNA Methylase AFL94_RS02595 PF03167 Uracil DNA glycosylase superfamily AFL94_RS02610 PF00118 TCP-1/cpn60 chaperonin family AFL94_RS02630 PF00672 HAMP domain AFL94_RS02630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS02630 PF00512 His Kinase A (phospho-acceptor) domain AFL94_RS02635 PF00486 Transcriptional regulatory protein, C terminal AFL94_RS02635 PF00072 Response regulator receiver domain AFL94_RS02645 PF00313 'Cold-shock' DNA-binding domain AFL94_RS02655 PF00266 Aminotransferase class-V AFL94_RS02660 PF18357 Diphteria toxin repressor SH3 domain AFL94_RS02660 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFL94_RS02660 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFL94_RS02665 PF01476 LysM domain AFL94_RS02665 PF01551 Peptidase family M23 AFL94_RS02665 PF08525 Opacity-associated protein A N-terminal motif AFL94_RS02670 PF00877 NlpC/P60 family AFL94_RS02680 PF09297 NADH pyrophosphatase zinc ribbon domain AFL94_RS02680 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AFL94_RS02680 PF00293 NUDIX domain AFL94_RS02700 PF13361 UvrD-like helicase C-terminal domain AFL94_RS02700 PF00580 UvrD/REP helicase N-terminal domain AFL94_RS02705 PF00549 CoA-ligase AFL94_RS02705 PF08442 ATP-grasp domain AFL94_RS02710 PF00549 CoA-ligase AFL94_RS02710 PF02629 CoA binding domain AFL94_RS02720 PF12419 SNF2 Helicase protein AFL94_RS02720 PF00271 Helicase conserved C-terminal domain AFL94_RS02720 PF00176 SNF2 family N-terminal domain AFL94_RS02745 PF01381 Helix-turn-helix AFL94_RS02745 PF08671 Anti-repressor SinI AFL94_RS02755 PF13520 Amino acid permease AFL94_RS02765 PF00202 Aminotransferase class-III AFL94_RS02770 PF00491 Arginase family AFL94_RS02775 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_RS02775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_RS02775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS02785 PF00459 Inositol monophosphatase family AFL94_RS02790 PF01047 MarR family AFL94_RS02795 PF07690 Major Facilitator Superfamily AFL94_RS02805 PF02515 CoA-transferase family III AFL94_RS02810 PF07905 Purine catabolism regulatory protein-like family AFL94_RS02810 PF13556 PucR C-terminal helix-turn-helix domain AFL94_RS02810 PF17853 GGDEF-like domain AFL94_RS02815 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS02815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS02815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS02820 PF00171 Aldehyde dehydrogenase family AFL94_RS02825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_RS02825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_RS02845 PF04954 Siderophore-interacting protein AFL94_RS02845 PF08021 Siderophore-interacting FAD-binding domain AFL94_RS02850 PF03352 Methyladenine glycosylase AFL94_RS02850 PF00117 Glutamine amidotransferase class-I AFL94_RS02850 PF13302 Acetyltransferase (GNAT) domain AFL94_RS02850 PF13673 Acetyltransferase (GNAT) domain AFL94_RS02850 PF00958 GMP synthase C terminal domain AFL94_RS02855 PF01022 Bacterial regulatory protein, arsR family AFL94_RS02860 PF01545 Cation efflux family AFL94_RS02865 PF00005 ABC transporter AFL94_RS02865 PF02687 FtsX-like permease family AFL94_RS02865 PF12704 MacB-like periplasmic core domain AFL94_RS02870 PF02687 FtsX-like permease family AFL94_RS02870 PF12704 MacB-like periplasmic core domain AFL94_RS02915 PF03631 Virulence factor BrkB AFL94_RS02920 PF06737 Transglycosylase-like domain AFL94_RS02920 PF07501 G5 domain AFL94_RS02920 PF03990 G5-linked-Ubiquitin-like domain AFL94_RS02925 PF02515 CoA-transferase family III AFL94_RS02935 PF03301 Tryptophan 2,3-dioxygenase AFL94_RS02945 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_RS02950 PF03328 HpcH/HpaI aldolase/citrate lyase family AFL94_RS02965 PF00551 Formyl transferase AFL94_RS02970 PF00106 short chain dehydrogenase AFL94_RS03000 PF07690 Major Facilitator Superfamily AFL94_RS03010 PF01808 AICARFT/IMPCHase bienzyme AFL94_RS03010 PF02142 MGS-like domain AFL94_RS03015 PF02028 BCCT, betaine/carnitine/choline family transporter AFL94_RS03035 PF01566 Natural resistance-associated macrophage protein AFL94_RS03040 PF07286 Protein of unknown function (DUF1445) AFL94_RS03055 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS03055 PF07729 FCD domain AFL94_RS03070 PF00364 Biotin-requiring enzyme AFL94_RS03070 PF00289 Biotin carboxylase, N-terminal domain AFL94_RS03070 PF02785 Biotin carboxylase C-terminal domain AFL94_RS03070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_RS03075 PF02626 Carboxyltransferase domain, subdomain A and B AFL94_RS03080 PF03746 LamB/YcsF family AFL94_RS03085 PF06628 Catalase-related immune-responsive AFL94_RS03085 PF00199 Catalase AFL94_RS03085 PF18011 C-terminal domain found in long catalases AFL94_RS03090 PF07690 Major Facilitator Superfamily AFL94_RS03100 PF03971 Monomeric isocitrate dehydrogenase AFL94_RS03110 PF01966 HD domain AFL94_RS03110 PF13286 Phosphohydrolase-associated domain AFL94_RS03115 PF07729 FCD domain AFL94_RS03115 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS03120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_RS03160 PF00005 ABC transporter AFL94_RS03180 PF01717 Cobalamin-independent synthase, Catalytic domain AFL94_RS03180 PF08267 Cobalamin-independent synthase, N-terminal domain AFL94_RS03190 PF03466 LysR substrate binding domain AFL94_RS03190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS03195 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_RS03200 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_RS03235 PF12833 Helix-turn-helix domain AFL94_RS03235 PF06445 GyrI-like small molecule binding domain AFL94_RS03240 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_RS03245 PF00551 Formyl transferase AFL94_RS03255 PF00743 Flavin-binding monooxygenase-like AFL94_RS03260 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFL94_RS03260 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFL94_RS03290 PF04226 Transglycosylase associated protein AFL94_RS03295 PF07690 Major Facilitator Superfamily AFL94_RS03295 PF00083 Sugar (and other) transporter AFL94_RS03300 PF03466 LysR substrate binding domain AFL94_RS03300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS03310 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS03310 PF00072 Response regulator receiver domain AFL94_RS03335 PF03372 Endonuclease/Exonuclease/phosphatase family AFL94_RS03340 PF00579 tRNA synthetases class I (W and Y) AFL94_RS03360 PF01740 STAS domain AFL94_RS03360 PF00916 Sulfate permease family AFL94_RS03370 PF03781 Sulfatase-modifying factor enzyme 1 AFL94_RS03375 PF00072 Response regulator receiver domain AFL94_RS03375 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS03400 PF13085 2Fe-2S iron-sulfur cluster binding domain AFL94_RS03405 PF02910 Fumarate reductase flavoprotein C-term AFL94_RS03405 PF00890 FAD binding domain AFL94_RS03415 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFL94_RS03420 PF00483 Nucleotidyl transferase AFL94_RS03420 PF01050 Mannose-6-phosphate isomerase AFL94_RS03425 PF02028 BCCT, betaine/carnitine/choline family transporter AFL94_RS03430 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFL94_RS03430 PF01546 Peptidase family M20/M25/M40 AFL94_RS03435 PF02608 ABC transporter substrate-binding protein PnrA-like AFL94_RS03440 PF00005 ABC transporter AFL94_RS03445 PF02653 Branched-chain amino acid transport system / permease component AFL94_RS03450 PF02653 Branched-chain amino acid transport system / permease component AFL94_RS03455 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_RS03460 PF00591 Glycosyl transferase family, a/b domain AFL94_RS03460 PF02885 Glycosyl transferase family, helical bundle domain AFL94_RS03460 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AFL94_RS03470 PF00962 Adenosine/AMP deaminase AFL94_RS03475 PF00171 Aldehyde dehydrogenase family AFL94_RS03480 PF03819 MazG nucleotide pyrophosphohydrolase domain AFL94_RS03485 PF03952 Enolase, N-terminal domain AFL94_RS03485 PF00113 Enolase, C-terminal TIM barrel domain AFL94_RS03500 PF02541 Ppx/GppA phosphatase family AFL94_RS03505 PF05922 Peptidase inhibitor I9 AFL94_RS03505 PF00082 Subtilase family AFL94_RS03530 PF01594 AI-2E family transporter AFL94_RS03535 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_RS03535 PF13291 ACT domain AFL94_RS03540 PF01272 Transcription elongation factor, GreA/GreB, C-term AFL94_RS03540 PF03449 Transcription elongation factor, N-terminal AFL94_RS03550 PF02585 GlcNAc-PI de-N-acetylase AFL94_RS03560 PF03190 Protein of unknown function, DUF255 AFL94_RS03565 PF01255 Putative undecaprenyl diphosphate synthase AFL94_RS03570 PF02562 PhoH-like protein AFL94_RS03570 PF13638 PIN domain AFL94_RS03585 PF00293 NUDIX domain AFL94_RS03590 PF07690 Major Facilitator Superfamily AFL94_RS03615 PF10415 Fumarase C C-terminus AFL94_RS03615 PF00206 Lyase AFL94_RS03620 PF00484 Carbonic anhydrase AFL94_RS03630 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AFL94_RS03635 PF01238 Phosphomannose isomerase type I AFL94_RS03640 PF03816 Cell envelope-related transcriptional attenuator domain AFL94_RS03645 PF00731 AIR carboxylase AFL94_RS03650 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AFL94_RS03650 PF02222 ATP-grasp domain AFL94_RS03655 PF04138 GtrA-like protein AFL94_RS03665 PF02467 Transcription factor WhiB AFL94_RS03700 PF00501 AMP-binding enzyme AFL94_RS03705 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AFL94_RS03705 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase AFL94_RS03710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFL94_RS03715 PF00171 Aldehyde dehydrogenase family AFL94_RS03730 PF17863 AAA lid domain AFL94_RS03730 PF07726 ATPase family associated with various cellular activities (AAA) AFL94_RS03735 PF01026 TatD related DNase AFL94_RS03740 PF03990 G5-linked-Ubiquitin-like domain AFL94_RS03740 PF07501 G5 domain AFL94_RS03740 PF06737 Transglycosylase-like domain AFL94_RS03745 PF00398 Ribosomal RNA adenine dimethylase AFL94_RS03750 PF00288 GHMP kinases N terminal domain AFL94_RS03750 PF08544 GHMP kinases C terminal AFL94_RS03765 PF00155 Aminotransferase class I and II AFL94_RS03780 PF16326 ABC transporter C-terminal domain AFL94_RS03780 PF12848 ABC transporter AFL94_RS03780 PF00005 ABC transporter AFL94_RS03790 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_RS03790 PF12804 MobA-like NTP transferase domain AFL94_RS03795 PF14572 Phosphoribosyl synthetase-associated domain AFL94_RS03795 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFL94_RS03805 PF01386 Ribosomal L25p family AFL94_RS03805 PF14693 Ribosomal protein TL5, C-terminal domain AFL94_RS03810 PF01195 Peptidyl-tRNA hydrolase AFL94_RS03815 PF00990 Diguanylate cyclase, GGDEF domain AFL94_RS03820 PF00266 Aminotransferase class-V AFL94_RS03825 PF01592 NifU-like N terminal domain AFL94_RS03830 PF06965 Na+/H+ antiporter 1 AFL94_RS03840 PF17757 UvrB interaction domain AFL94_RS03840 PF03461 TRCF domain AFL94_RS03840 PF00271 Helicase conserved C-terminal domain AFL94_RS03840 PF00270 DEAD/DEAH box helicase AFL94_RS03840 PF02559 CarD-like/TRCF domain AFL94_RS03850 PF00403 Heavy-metal-associated domain AFL94_RS03860 PF01791 DeoC/LacD family aldolase AFL94_RS03865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_RS03865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_RS03865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_RS03865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_RS03870 PF01048 Phosphorylase superfamily AFL94_RS03875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_RS03875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS03880 PF00083 Sugar (and other) transporter AFL94_RS03880 PF07690 Major Facilitator Superfamily AFL94_RS03900 PF00289 Biotin carboxylase, N-terminal domain AFL94_RS03900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_RS03900 PF00364 Biotin-requiring enzyme AFL94_RS03900 PF02785 Biotin carboxylase C-terminal domain AFL94_RS03910 PF03738 Glutathionylspermidine synthase preATP-grasp AFL94_RS03920 PF02545 Maf-like protein AFL94_RS03925 PF03176 MMPL family AFL94_RS03940 PF00375 Sodium:dicarboxylate symporter family AFL94_RS03950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_RS03960 PF07690 Major Facilitator Superfamily AFL94_RS03975 PF01039 Carboxyl transferase domain AFL94_RS03980 PF00596 Class II Aldolase and Adducin N-terminal domain AFL94_RS03995 PF00211 Adenylate and Guanylate cyclase catalytic domain AFL94_RS03995 PF16701 Adenylate cyclase regulatory domain AFL94_RS04005 PF00533 BRCA1 C Terminus (BRCT) domain AFL94_RS04005 PF03120 NAD-dependent DNA ligase OB-fold domain AFL94_RS04005 PF01653 NAD-dependent DNA ligase adenylation domain AFL94_RS04005 PF12826 Helix-hairpin-helix motif AFL94_RS04005 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFL94_RS04010 PF00459 Inositol monophosphatase family AFL94_RS04030 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFL94_RS04035 PF00933 Glycosyl hydrolase family 3 N terminal domain AFL94_RS04065 PF02686 Glu-tRNAGln amidotransferase C subunit AFL94_RS04070 PF01425 Amidase AFL94_RS04075 PF02934 GatB/GatE catalytic domain AFL94_RS04075 PF02637 GatB domain AFL94_RS04090 PF00480 ROK family AFL94_RS04095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_RS04100 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS04105 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_RS04105 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS04110 PF00005 ABC transporter AFL94_RS04110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_RS04115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_RS04115 PF00005 ABC transporter AFL94_RS04120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_RS04120 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_RS04125 PF13419 Haloacid dehalogenase-like hydrolase AFL94_RS04135 PF07690 Major Facilitator Superfamily AFL94_RS04140 PF03466 LysR substrate binding domain AFL94_RS04140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS04145 PF00107 Zinc-binding dehydrogenase AFL94_RS04145 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_RS04150 PF00155 Aminotransferase class I and II AFL94_RS04160 PF01547 Bacterial extracellular solute-binding protein AFL94_RS04165 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS04170 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS04185 PF17392 Urocanase C-terminal domain AFL94_RS04185 PF01175 Urocanase Rossmann-like domain AFL94_RS04185 PF17391 Urocanase N-terminal domain AFL94_RS04190 PF07670 Nucleoside recognition AFL94_RS04195 PF01546 Peptidase family M20/M25/M40 AFL94_RS04200 PF01979 Amidohydrolase family AFL94_RS04205 PF01979 Amidohydrolase family AFL94_RS04210 PF08534 Redoxin AFL94_RS04215 PF01380 SIS domain AFL94_RS04215 PF00571 CBS domain AFL94_RS04220 PF03309 Type III pantothenate kinase AFL94_RS04225 PF00294 pfkB family carbohydrate kinase AFL94_RS04230 PF01116 Fructose-bisphosphate aldolase class-II AFL94_RS04235 PF01547 Bacterial extracellular solute-binding protein AFL94_RS04240 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS04245 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS04250 PF03932 CutC family AFL94_RS04255 PF08220 DeoR-like helix-turn-helix domain AFL94_RS04255 PF00455 DeoR C terminal sensor domain AFL94_RS04285 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_RS04290 PF00561 alpha/beta hydrolase fold AFL94_RS04295 PF13472 GDSL-like Lipase/Acylhydrolase family AFL94_RS04315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_RS04315 PF03129 Anticodon binding domain AFL94_RS04350 PF01207 Dihydrouridine synthase (Dus) AFL94_RS04355 PF01966 HD domain AFL94_RS04355 PF13286 Phosphohydrolase-associated domain AFL94_RS04360 PF10410 DnaB-helicase binding domain of primase AFL94_RS04360 PF08278 DNA primase DnaG DnaB-binding AFL94_RS04360 PF13662 Toprim domain AFL94_RS04360 PF08275 DNA primase catalytic core, N-terminal domain AFL94_RS04360 PF01807 CHC2 zinc finger AFL94_RS04385 PF13732 Domain of unknown function (DUF4162) AFL94_RS04385 PF00005 ABC transporter AFL94_RS04395 PF03551 Transcriptional regulator PadR-like family AFL94_RS04405 PF06276 Ferric iron reductase FhuF-like transporter AFL94_RS04405 PF04183 IucA / IucC family AFL94_RS04410 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AFL94_RS04415 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFL94_RS04425 PF00534 Glycosyl transferases group 1 AFL94_RS04425 PF13579 Glycosyl transferase 4-like domain AFL94_RS04445 PF13439 Glycosyltransferase Family 4 AFL94_RS04445 PF00534 Glycosyl transferases group 1 AFL94_RS04460 PF00318 Ribosomal protein S2 AFL94_RS04465 PF00889 Elongation factor TS AFL94_RS04470 PF00696 Amino acid kinase family AFL94_RS04475 PF01765 Ribosome recycling factor AFL94_RS04490 PF00474 Sodium:solute symporter family AFL94_RS04500 PF04397 LytTr DNA-binding domain AFL94_RS04500 PF00072 Response regulator receiver domain AFL94_RS04505 PF06580 Histidine kinase AFL94_RS04505 PF07694 5TMR of 5TMR-LYT AFL94_RS04515 PF00474 Sodium:solute symporter family AFL94_RS04520 PF02585 GlcNAc-PI de-N-acetylase AFL94_RS04525 PF07478 D-ala D-ala ligase C-terminus AFL94_RS04525 PF01820 D-ala D-ala ligase N-terminus AFL94_RS04530 PF00535 Glycosyl transferase family 2 AFL94_RS04540 PF00676 Dehydrogenase E1 component AFL94_RS04545 PF02780 Transketolase, C-terminal domain AFL94_RS04545 PF02779 Transketolase, pyrimidine binding domain AFL94_RS04550 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_RS04550 PF00364 Biotin-requiring enzyme AFL94_RS04550 PF02817 e3 binding domain AFL94_RS04555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_RS04560 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS04565 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_RS04565 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS04570 PF00005 ABC transporter AFL94_RS04570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_RS04580 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS04585 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS04585 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_RS04590 PF00005 ABC transporter AFL94_RS04590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_RS04605 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS04605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS04605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS04610 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AFL94_RS04610 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFL94_RS04610 PF13288 DXP reductoisomerase C-terminal domain AFL94_RS04615 PF17820 PDZ domain AFL94_RS04615 PF02163 Peptidase family M50 AFL94_RS04625 PF03462 PCRF domain AFL94_RS04625 PF00472 RF-1 domain AFL94_RS04630 PF03358 NADPH-dependent FMN reductase AFL94_RS04635 PF04551 GcpE protein AFL94_RS04665 PF03129 Anticodon binding domain AFL94_RS04665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_RS04665 PF04073 Aminoacyl-tRNA editing domain AFL94_RS04670 PF01925 Sulfite exporter TauE/SafE AFL94_RS04675 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS04675 PF00072 Response regulator receiver domain AFL94_RS04680 PF07730 Histidine kinase AFL94_RS04690 PF03631 Virulence factor BrkB AFL94_RS04705 PF02576 RimP N-terminal domain AFL94_RS04705 PF17384 RimP C-terminal SH3 domain AFL94_RS04710 PF13184 NusA-like KH domain AFL94_RS04710 PF08529 NusA N-terminal domain AFL94_RS04715 PF04760 Translation initiation factor IF-2, N-terminal region AFL94_RS04715 PF00009 Elongation factor Tu GTP binding domain AFL94_RS04715 PF11987 Translation-initiation factor 2 AFL94_RS04720 PF02033 Ribosome-binding factor A AFL94_RS04730 PF10099 Anti-sigma-K factor rskA AFL94_RS04735 PF04542 Sigma-70 region 2 AFL94_RS04735 PF04545 Sigma-70, region 4 AFL94_RS04740 PF02469 Fasciclin domain AFL94_RS04745 PF00474 Sodium:solute symporter family AFL94_RS04750 PF07690 Major Facilitator Superfamily AFL94_RS04755 PF01546 Peptidase family M20/M25/M40 AFL94_RS04755 PF07687 Peptidase dimerisation domain AFL94_RS04770 PF09142 tRNA Pseudouridine synthase II, C terminal AFL94_RS04770 PF16198 tRNA pseudouridylate synthase B C-terminal domain AFL94_RS04770 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFL94_RS04785 PF01687 Riboflavin kinase AFL94_RS04785 PF06574 FAD synthetase AFL94_RS04790 PF08241 Methyltransferase domain AFL94_RS04795 PF00312 Ribosomal protein S15 AFL94_RS04810 PF00266 Aminotransferase class-V AFL94_RS04815 PF02016 LD-carboxypeptidase N-terminal domain AFL94_RS04815 PF17676 LD-carboxypeptidase C-terminal domain AFL94_RS04830 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS04830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS04830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS04845 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AFL94_RS04850 PF00501 AMP-binding enzyme AFL94_RS04855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFL94_RS04855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFL94_RS04865 PF00582 Universal stress protein family AFL94_RS04870 PF01970 Tripartite tricarboxylate transporter TctA family AFL94_RS04885 PF00989 PAS fold AFL94_RS04885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS04885 PF17203 Single cache domain 3 AFL94_RS04885 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFL94_RS04890 PF00072 Response regulator receiver domain AFL94_RS04890 PF08279 HTH domain AFL94_RS04895 PF03747 ADP-ribosylglycohydrolase AFL94_RS04900 PF07690 Major Facilitator Superfamily AFL94_RS04905 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS04905 PF00155 Aminotransferase class I and II AFL94_RS04910 PF00013 KH domain AFL94_RS04910 PF00575 S1 RNA binding domain AFL94_RS04910 PF01138 3' exoribonuclease family, domain 1 AFL94_RS04910 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFL94_RS04915 PF07690 Major Facilitator Superfamily AFL94_RS04925 PF12833 Helix-turn-helix domain AFL94_RS04925 PF14525 AraC-binding-like domain AFL94_RS04935 PF17885 Styrene monooxygenase A putative substrate binding domain AFL94_RS04940 PF01613 Flavin reductase like domain AFL94_RS04955 PF01613 Flavin reductase like domain AFL94_RS04960 PF00296 Luciferase-like monooxygenase AFL94_RS04965 PF07494 Two component regulator propeller AFL94_RS04965 PF12833 Helix-turn-helix domain AFL94_RS04965 PF00072 Response regulator receiver domain AFL94_RS04965 PF00512 His Kinase A (phospho-acceptor) domain AFL94_RS04965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS04965 PF07495 Y_Y_Y domain AFL94_RS04970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_RS04970 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_RS04970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS04985 PF01494 FAD binding domain AFL94_RS04990 PF00501 AMP-binding enzyme AFL94_RS04990 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS05005 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_RS05010 PF01042 Endoribonuclease L-PSP AFL94_RS05020 PF01048 Phosphorylase superfamily AFL94_RS05025 PF02664 S-Ribosylhomocysteinase (LuxS) AFL94_RS05040 PF00149 Calcineurin-like phosphoesterase AFL94_RS05045 PF00890 FAD binding domain AFL94_RS05050 PF03466 LysR substrate binding domain AFL94_RS05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS05055 PF07690 Major Facilitator Superfamily AFL94_RS05055 PF00083 Sugar (and other) transporter AFL94_RS05060 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_RS05060 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFL94_RS05060 PF03435 Saccharopine dehydrogenase NADP binding domain AFL94_RS05065 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_RS05065 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_RS05075 PF00890 FAD binding domain AFL94_RS05085 PF00107 Zinc-binding dehydrogenase AFL94_RS05085 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_RS05090 PF00890 FAD binding domain AFL94_RS05105 PF05193 Peptidase M16 inactive domain AFL94_RS05105 PF00675 Insulinase (Peptidase family M16) AFL94_RS05110 PF12697 Alpha/beta hydrolase family AFL94_RS05120 PF05173 Dihydrodipicolinate reductase, C-terminus AFL94_RS05120 PF01113 Dihydrodipicolinate reductase, N-terminus AFL94_RS05135 PF00701 Dihydrodipicolinate synthetase family AFL94_RS05140 PF12706 Beta-lactamase superfamily domain AFL94_RS05140 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFL94_RS05140 PF17770 Ribonuclease J C-terminal domain AFL94_RS05155 PF05154 TM2 domain AFL94_RS05160 PF00005 ABC transporter AFL94_RS05160 PF00571 CBS domain AFL94_RS05165 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS05170 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS05180 PF17854 FtsK alpha domain AFL94_RS05180 PF01580 FtsK/SpoIIIE family AFL94_RS05180 PF09397 Ftsk gamma domain AFL94_RS05185 PF01066 CDP-alcohol phosphatidyltransferase AFL94_RS05190 PF00994 Probable molybdopterin binding domain AFL94_RS05190 PF18146 Damage-inducible protein CinA KH domain AFL94_RS05190 PF02464 Competence-damaged protein AFL94_RS05205 PF00154 recA bacterial DNA recombination protein AFL94_RS05210 PF02631 RecX family AFL94_RS05215 PF00919 Uncharacterized protein family UPF0004 AFL94_RS05215 PF01938 TRAM domain AFL94_RS05215 PF04055 Radical SAM superfamily AFL94_RS05225 PF01678 Diaminopimelate epimerase AFL94_RS05230 PF05175 Methyltransferase small domain AFL94_RS05230 PF08468 Methyltransferase small domain N-terminal AFL94_RS05235 PF16360 GTP-binding GTPase Middle Region AFL94_RS05235 PF13167 GTP-binding GTPase N-terminal AFL94_RS05235 PF01926 50S ribosome-binding GTPase AFL94_RS05240 PF13307 Helicase C-terminal domain AFL94_RS05245 PF00717 Peptidase S24-like AFL94_RS05245 PF01726 LexA DNA binding domain AFL94_RS05255 PF00155 Aminotransferase class I and II AFL94_RS05260 PF00475 Imidazoleglycerol-phosphate dehydratase AFL94_RS05265 PF00117 Glutamine amidotransferase class-I AFL94_RS05270 PF00977 Histidine biosynthesis protein AFL94_RS05290 PF05198 Translation initiation factor IF-3, N-terminal domain AFL94_RS05290 PF00707 Translation initiation factor IF-3, C-terminal domain AFL94_RS05295 PF01632 Ribosomal protein L35 AFL94_RS05300 PF00453 Ribosomal protein L20 AFL94_RS05305 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFL94_RS05305 PF00588 SpoU rRNA Methylase family AFL94_RS05310 PF00293 NUDIX domain AFL94_RS05320 PF01409 tRNA synthetases class II core domain (F) AFL94_RS05320 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFL94_RS05325 PF03147 Ferredoxin-fold anticodon binding domain AFL94_RS05325 PF03484 tRNA synthetase B5 domain AFL94_RS05325 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AFL94_RS05325 PF01588 Putative tRNA binding domain AFL94_RS05325 PF03483 B3/4 domain AFL94_RS05345 PF00156 Phosphoribosyl transferase domain AFL94_RS05375 PF00107 Zinc-binding dehydrogenase AFL94_RS05375 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_RS05380 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFL94_RS05380 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFL94_RS05385 PF01960 ArgJ family AFL94_RS05390 PF00696 Amino acid kinase family AFL94_RS05395 PF00202 Aminotransferase class-III AFL94_RS05400 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFL94_RS05400 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFL94_RS05405 PF02863 Arginine repressor, C-terminal domain AFL94_RS05405 PF01316 Arginine repressor, DNA binding domain AFL94_RS05410 PF01661 Macro domain AFL94_RS05415 PF00206 Lyase AFL94_RS05415 PF14698 Argininosuccinate lyase C-terminal AFL94_RS05425 PF00156 Phosphoribosyl transferase domain AFL94_RS05435 PF00579 tRNA synthetases class I (W and Y) AFL94_RS05465 PF18407 GCN5-related N-acetyltransferase like domain AFL94_RS05465 PF13344 Haloacid dehalogenase-like hydrolase AFL94_RS05475 PF01479 S4 domain AFL94_RS05475 PF01728 FtsJ-like methyltransferase AFL94_RS05480 PF01513 ATP-NAD kinase AFL94_RS05485 PF02463 RecF/RecN/SMC N terminal domain AFL94_RS05490 PF00117 Glutamine amidotransferase class-I AFL94_RS05490 PF06418 CTP synthase N-terminus AFL94_RS05495 PF00293 NUDIX domain AFL94_RS05500 PF02899 Phage integrase, N-terminal SAM-like domain AFL94_RS05500 PF00589 Phage integrase family AFL94_RS05505 PF00293 NUDIX domain AFL94_RS05510 PF13443 Cro/C1-type HTH DNA-binding domain AFL94_RS05520 PF00285 Citrate synthase, C-terminal domain AFL94_RS05530 PF03972 MmgE/PrpD family AFL94_RS05535 PF07729 FCD domain AFL94_RS05535 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS05540 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS05540 PF00501 AMP-binding enzyme AFL94_RS05540 PF16177 Acetyl-coenzyme A synthetase N-terminus AFL94_RS05550 PF04703 FaeA-like protein AFL94_RS05550 PF00072 Response regulator receiver domain AFL94_RS05555 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFL94_RS05555 PF17203 Single cache domain 3 AFL94_RS05555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS05560 PF00375 Sodium:dicarboxylate symporter family AFL94_RS05570 PF13614 AAA domain AFL94_RS05575 PF02616 Segregation and condensation protein ScpA AFL94_RS05580 PF04079 Segregation and condensation complex subunit ScpB AFL94_RS05585 PF01479 S4 domain AFL94_RS05585 PF00849 RNA pseudouridylate synthase AFL94_RS05590 PF02153 Prephenate dehydrogenase AFL94_RS05595 PF02224 Cytidylate kinase AFL94_RS05600 PF01926 50S ribosome-binding GTPase AFL94_RS05600 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFL94_RS05610 PF02567 Phenazine biosynthesis-like protein AFL94_RS05620 PF00005 ABC transporter AFL94_RS05625 PF01494 FAD binding domain AFL94_RS05625 PF07976 Phenol hydroxylase, C-terminal dimerisation domain AFL94_RS05630 PF04343 Protein of unknown function, DUF488 AFL94_RS05635 PF00498 FHA domain AFL94_RS05640 PF00376 MerR family regulatory protein AFL94_RS05645 PF02577 Bifunctional nuclease AFL94_RS05650 PF13411 MerR HTH family regulatory protein AFL94_RS05655 PF13614 AAA domain AFL94_RS05660 PF02785 Biotin carboxylase C-terminal domain AFL94_RS05660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_RS05660 PF00682 HMGL-like AFL94_RS05660 PF00289 Biotin carboxylase, N-terminal domain AFL94_RS05660 PF00364 Biotin-requiring enzyme AFL94_RS05660 PF02436 Conserved carboxylase domain AFL94_RS05670 PF00501 AMP-binding enzyme AFL94_RS05690 PF01474 Class-II DAHP synthetase family AFL94_RS05695 PF03793 PASTA domain AFL94_RS05695 PF00069 Protein kinase domain AFL94_RS05700 PF02467 Transcription factor WhiB AFL94_RS05710 PF01580 FtsK/SpoIIIE family AFL94_RS05710 PF12538 DNA transporter AFL94_RS05715 PF00437 Type II/IV secretion system protein AFL94_RS05750 PF03462 PCRF domain AFL94_RS05750 PF00472 RF-1 domain AFL94_RS05755 PF00005 ABC transporter AFL94_RS05760 PF02687 FtsX-like permease family AFL94_RS05760 PF18075 FtsX extracellular domain AFL94_RS05765 PF01464 Transglycosylase SLT domain AFL94_RS05765 PF01551 Peptidase family M23 AFL94_RS05765 PF10145 Phage-related minor tail protein AFL94_RS05770 PF01668 SmpB protein AFL94_RS05780 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFL94_RS05785 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFL94_RS05790 PF00582 Universal stress protein family AFL94_RS05795 PF00950 ABC 3 transport family AFL94_RS05795 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFL94_RS05800 PF00459 Inositol monophosphatase family AFL94_RS05805 PF03193 RsgA GTPase AFL94_RS05810 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFL94_RS05815 PF04542 Sigma-70 region 2 AFL94_RS05815 PF08281 Sigma-70, region 4 AFL94_RS05830 PF16078 2-oxoglutarate dehydrogenase N-terminus AFL94_RS05830 PF00676 Dehydrogenase E1 component AFL94_RS05830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_RS05830 PF16870 2-oxoglutarate dehydrogenase C-terminal AFL94_RS05830 PF02779 Transketolase, pyrimidine binding domain AFL94_RS05835 PF03471 Transporter associated domain AFL94_RS05835 PF00571 CBS domain AFL94_RS05835 PF01595 Cyclin M transmembrane N-terminal domain AFL94_RS05840 PF00571 CBS domain AFL94_RS05840 PF03471 Transporter associated domain AFL94_RS05840 PF01595 Cyclin M transmembrane N-terminal domain AFL94_RS05845 PF00005 ABC transporter AFL94_RS05870 PF08544 GHMP kinases C terminal AFL94_RS05870 PF00288 GHMP kinases N terminal domain AFL94_RS05875 PF00581 Rhodanese-like domain AFL94_RS05880 PF01230 HIT domain AFL94_RS05885 PF04408 Helicase associated domain (HA2) AFL94_RS05885 PF11898 Domain of unknown function (DUF3418) AFL94_RS05885 PF00271 Helicase conserved C-terminal domain AFL94_RS05885 PF00270 DEAD/DEAH box helicase AFL94_RS05885 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AFL94_RS05900 PF00005 ABC transporter AFL94_RS05910 PF05746 DALR anticodon binding domain AFL94_RS05910 PF03485 Arginyl tRNA synthetase N terminal domain AFL94_RS05910 PF00750 tRNA synthetases class I (R) AFL94_RS05915 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFL94_RS05915 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFL94_RS05920 PF03447 Homoserine dehydrogenase, NAD binding domain AFL94_RS05920 PF00742 Homoserine dehydrogenase AFL94_RS05920 PF01842 ACT domain AFL94_RS05925 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_RS05930 PF00288 GHMP kinases N terminal domain AFL94_RS05935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_RS05935 PF07497 Rho termination factor, RNA-binding domain AFL94_RS05935 PF07498 Rho termination factor, N-terminal domain AFL94_RS05940 PF00472 RF-1 domain AFL94_RS05940 PF03462 PCRF domain AFL94_RS05945 PF17827 PrmC N-terminal domain AFL94_RS05950 PF01300 Telomere recombination AFL94_RS05955 PF00953 Glycosyl transferase family 4 AFL94_RS05965 PF00119 ATP synthase A chain AFL94_RS05970 PF00137 ATP synthase subunit C AFL94_RS05975 PF00430 ATP synthase B/B' CF(0) AFL94_RS05980 PF00213 ATP synthase delta (OSCP) subunit AFL94_RS05985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_RS05985 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFL94_RS05985 PF00306 ATP synthase alpha/beta chain, C terminal domain AFL94_RS05990 PF00231 ATP synthase AFL94_RS05995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_RS05995 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFL94_RS06000 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFL94_RS06015 PF01939 Endonuclease NucS AFL94_RS06025 PF01594 AI-2E family transporter AFL94_RS06040 PF13732 Domain of unknown function (DUF4162) AFL94_RS06040 PF00005 ABC transporter AFL94_RS06060 PF04851 Type III restriction enzyme, res subunit AFL94_RS06065 PF09924 Uncharacterised conserved protein (DUF2156) AFL94_RS06065 PF01336 OB-fold nucleic acid binding domain AFL94_RS06065 PF00152 tRNA synthetases class II (D, K and N) AFL94_RS06065 PF16995 Transmembrane region of lysyl-tRNA synthetase AFL94_RS06080 PF00857 Isochorismatase family AFL94_RS06085 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AFL94_RS06085 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFL94_RS06090 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFL94_RS06100 PF01177 Asp/Glu/Hydantoin racemase AFL94_RS06105 PF12706 Beta-lactamase superfamily domain AFL94_RS06120 PF01227 GTP cyclohydrolase I AFL94_RS06135 PF01138 3' exoribonuclease family, domain 1 AFL94_RS06135 PF03725 3' exoribonuclease family, domain 2 AFL94_RS06140 PF01725 Ham1 family AFL94_RS06150 PF00005 ABC transporter AFL94_RS06160 PF00929 Exonuclease AFL94_RS06160 PF02811 PHP domain AFL94_RS06160 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFL94_RS06160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFL94_RS06160 PF14579 Helix-hairpin-helix motif AFL94_RS06160 PF11490 DNA polymerase III polC-type N-terminus II AFL94_RS06160 PF14480 DNA polymerase III polC-type N-terminus I AFL94_RS06175 PF12320 Type 5 capsule protein repressor C-terminal domain AFL94_RS06175 PF00149 Calcineurin-like phosphoesterase AFL94_RS06180 PF13476 AAA domain AFL94_RS06195 PF00083 Sugar (and other) transporter AFL94_RS06200 PF00356 Bacterial regulatory proteins, lacI family AFL94_RS06205 PF00128 Alpha amylase, catalytic domain AFL94_RS06215 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS06215 PF14785 Maltose transport system permease protein MalF P2 domain AFL94_RS06220 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS06235 PF07690 Major Facilitator Superfamily AFL94_RS06255 PF04851 Type III restriction enzyme, res subunit AFL94_RS06260 PF09924 Uncharacterised conserved protein (DUF2156) AFL94_RS06260 PF00152 tRNA synthetases class II (D, K and N) AFL94_RS06260 PF16995 Transmembrane region of lysyl-tRNA synthetase AFL94_RS06260 PF01336 OB-fold nucleic acid binding domain AFL94_RS06275 PF00857 Isochorismatase family AFL94_RS06280 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AFL94_RS06280 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFL94_RS06285 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFL94_RS06295 PF01177 Asp/Glu/Hydantoin racemase AFL94_RS06300 PF12706 Beta-lactamase superfamily domain AFL94_RS06315 PF01227 GTP cyclohydrolase I AFL94_RS06330 PF01138 3' exoribonuclease family, domain 1 AFL94_RS06330 PF03725 3' exoribonuclease family, domain 2 AFL94_RS06335 PF01725 Ham1 family AFL94_RS06345 PF00005 ABC transporter AFL94_RS06355 PF02811 PHP domain AFL94_RS06355 PF14579 Helix-hairpin-helix motif AFL94_RS06355 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFL94_RS06355 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFL94_RS06355 PF11490 DNA polymerase III polC-type N-terminus II AFL94_RS06355 PF14480 DNA polymerase III polC-type N-terminus I AFL94_RS06355 PF00929 Exonuclease AFL94_RS06370 PF12320 Type 5 capsule protein repressor C-terminal domain AFL94_RS06370 PF00149 Calcineurin-like phosphoesterase AFL94_RS06375 PF13476 AAA domain AFL94_RS06390 PF00083 Sugar (and other) transporter AFL94_RS06395 PF00356 Bacterial regulatory proteins, lacI family AFL94_RS06400 PF00128 Alpha amylase, catalytic domain AFL94_RS06410 PF14785 Maltose transport system permease protein MalF P2 domain AFL94_RS06410 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS06415 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS06430 PF07690 Major Facilitator Superfamily AFL94_RS06445 PF00005 ABC transporter AFL94_RS06450 PF05139 Erythromycin esterase AFL94_RS06450 PF00156 Phosphoribosyl transferase domain AFL94_RS06455 PF02824 TGS domain AFL94_RS06455 PF04607 Region found in RelA / SpoT proteins AFL94_RS06455 PF13291 ACT domain AFL94_RS06465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_RS06470 PF00171 Aldehyde dehydrogenase family AFL94_RS06475 PF07729 FCD domain AFL94_RS06475 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS06480 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_RS06495 PF00920 Dehydratase family AFL94_RS06520 PF02445 Quinolinate synthetase A protein AFL94_RS06525 PF00890 FAD binding domain AFL94_RS06525 PF02910 Fumarate reductase flavoprotein C-term AFL94_RS06530 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFL94_RS06530 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFL94_RS06535 PF00266 Aminotransferase class-V AFL94_RS06540 PF03033 Glycosyltransferase family 28 N-terminal domain AFL94_RS06550 PF07690 Major Facilitator Superfamily AFL94_RS06570 PF01047 MarR family AFL94_RS06580 PF02623 FliW protein AFL94_RS06585 PF00700 Bacterial flagellin C-terminal helical region AFL94_RS06585 PF00669 Bacterial flagellin N-terminal helical region AFL94_RS06590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFL94_RS06590 PF00460 Flagella basal body rod protein AFL94_RS06600 PF04542 Sigma-70 region 2 AFL94_RS06600 PF04539 Sigma-70 region 3 AFL94_RS06600 PF04545 Sigma-70, region 4 AFL94_RS06605 PF00700 Bacterial flagellin C-terminal helical region AFL94_RS06605 PF00669 Bacterial flagellin N-terminal helical region AFL94_RS06610 PF02465 Flagellar hook-associated protein 2 N-terminus AFL94_RS06610 PF07195 Flagellar hook-associated protein 2 C-terminus AFL94_RS06610 PF07196 Flagellin hook IN motif AFL94_RS06625 PF00460 Flagella basal body rod protein AFL94_RS06630 PF00460 Flagella basal body rod protein AFL94_RS06630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFL94_RS06635 PF02049 Flagellar hook-basal body complex protein FliE AFL94_RS06640 PF01514 Secretory protein of YscJ/FliF family AFL94_RS06640 PF08345 Flagellar M-ring protein C-terminal AFL94_RS06655 PF18269 T3SS EscN ATPase C-terminal domain AFL94_RS06655 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFL94_RS06655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFL94_RS06665 PF00877 NlpC/P60 family AFL94_RS06675 PF03963 Flagellar hook capping protein - N-terminal region AFL94_RS06675 PF13860 FlgD Ig-like domain AFL94_RS06675 PF13861 FlgD Tudor-like domain AFL94_RS06680 PF07559 Flagellar basal body protein FlaE AFL94_RS06680 PF00460 Flagella basal body rod protein AFL94_RS06680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFL94_RS06690 PF01618 MotA/TolQ/ExbB proton channel family AFL94_RS06695 PF00691 OmpA family AFL94_RS06695 PF13677 Membrane MotB of proton-channel complex MotA/MotB AFL94_RS06705 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFL94_RS06715 PF00813 FliP family AFL94_RS06720 PF01313 Bacterial export proteins, family 3 AFL94_RS06725 PF01311 Bacterial export proteins, family 1 AFL94_RS06730 PF01312 FlhB HrpN YscU SpaS Family AFL94_RS06735 PF00771 FHIPEP family AFL94_RS06745 PF02599 Global regulator protein family AFL94_RS06765 PF00873 AcrB/AcrD/AcrF family AFL94_RS06780 PF06039 Malate:quinone oxidoreductase (Mqo) AFL94_RS06785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_RS06790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_RS06805 PF00149 Calcineurin-like phosphoesterase AFL94_RS06815 PF00578 AhpC/TSA family AFL94_RS06825 PF01047 MarR family AFL94_RS06830 PF11066 Protein of unknown function (DUF2867) AFL94_RS06830 PF13460 NAD(P)H-binding AFL94_RS06845 PF00348 Polyprenyl synthetase AFL94_RS06855 PF01593 Flavin containing amine oxidoreductase AFL94_RS06865 PF01040 UbiA prenyltransferase family AFL94_RS06870 PF01040 UbiA prenyltransferase family AFL94_RS06875 PF00293 NUDIX domain AFL94_RS06885 PF00563 EAL domain AFL94_RS06885 PF00990 Diguanylate cyclase, GGDEF domain AFL94_RS06885 PF03707 Bacterial signalling protein N terminal repeat AFL94_RS06900 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFL94_RS06900 PF13632 Glycosyl transferase family group 2 AFL94_RS06910 PF00920 Dehydratase family AFL94_RS06915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS06915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_RS06915 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_RS06920 PF10369 Small subunit of acetolactate synthase AFL94_RS06925 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AFL94_RS06925 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFL94_RS06930 PF13847 Methyltransferase domain AFL94_RS06930 PF03551 Transcriptional regulator PadR-like family AFL94_RS06940 PF00483 Nucleotidyl transferase AFL94_RS06945 PF16363 GDP-mannose 4,6 dehydratase AFL94_RS06950 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFL94_RS06960 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS06965 PF02397 Bacterial sugar transferase AFL94_RS06970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_RS06970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_RS06975 PF16363 GDP-mannose 4,6 dehydratase AFL94_RS06980 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFL94_RS06990 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFL94_RS07035 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_RS07095 PF00535 Glycosyl transferase family 2 AFL94_RS07120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFL94_RS07120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFL94_RS07120 PF01842 ACT domain AFL94_RS07170 PF01936 NYN domain AFL94_RS07175 PF08264 Anticodon-binding domain of tRNA AFL94_RS07175 PF09334 tRNA synthetases class I (M) AFL94_RS07180 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS07180 PF00072 Response regulator receiver domain AFL94_RS07185 PF07730 Histidine kinase AFL94_RS07190 PF00180 Isocitrate/isopropylmalate dehydrogenase AFL94_RS07195 PF01063 Amino-transferase class IV AFL94_RS07200 PF16363 GDP-mannose 4,6 dehydratase AFL94_RS07205 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_RS07210 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFL94_RS07215 PF13419 Haloacid dehalogenase-like hydrolase AFL94_RS07235 PF03193 RsgA GTPase AFL94_RS07245 PF02769 AIR synthase related protein, C-terminal domain AFL94_RS07245 PF00586 AIR synthase related protein, N-terminal domain AFL94_RS07255 PF00330 Aconitase family (aconitate hydratase) AFL94_RS07260 PF00694 Aconitase C-terminal domain AFL94_RS07265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFL94_RS07275 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFL94_RS07275 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFL94_RS07280 PF07478 D-ala D-ala ligase C-terminus AFL94_RS07280 PF01820 D-ala D-ala ligase N-terminus AFL94_RS07290 PF03816 Cell envelope-related transcriptional attenuator domain AFL94_RS07295 PF13684 Dihydroxyacetone kinase family AFL94_RS07295 PF02734 DAK2 domain AFL94_RS07300 PF17191 RecG wedge domain AFL94_RS07300 PF00271 Helicase conserved C-terminal domain AFL94_RS07300 PF00270 DEAD/DEAH box helicase AFL94_RS07315 PF00155 Aminotransferase class I and II AFL94_RS07320 PF01467 Cytidylyltransferase-like AFL94_RS07325 PF00483 Nucleotidyl transferase AFL94_RS07330 PF03816 Cell envelope-related transcriptional attenuator domain AFL94_RS07335 PF01061 ABC-2 type transporter AFL94_RS07340 PF00005 ABC transporter AFL94_RS07340 PF14524 Wzt C-terminal domain AFL94_RS07345 PF00535 Glycosyl transferase family 2 AFL94_RS07355 PF01467 Cytidylyltransferase-like AFL94_RS07360 PF17102 Stealth protein CR3, conserved region 3 AFL94_RS07360 PF17103 Stealth protein CR4, conserved region 4 AFL94_RS07360 PF11380 Stealth protein CR2, conserved region 2 AFL94_RS07360 PF17101 Stealth protein CR1, conserved region 1 AFL94_RS07365 PF00535 Glycosyl transferase family 2 AFL94_RS07365 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AFL94_RS07375 PF13276 HTH-like domain AFL94_RS07375 PF00665 Integrase core domain AFL94_RS07375 PF13333 Integrase core domain AFL94_RS07380 PF01527 Transposase AFL94_RS07385 PF11380 Stealth protein CR2, conserved region 2 AFL94_RS07385 PF00534 Glycosyl transferases group 1 AFL94_RS07385 PF17101 Stealth protein CR1, conserved region 1 AFL94_RS07385 PF17103 Stealth protein CR4, conserved region 4 AFL94_RS07385 PF17102 Stealth protein CR3, conserved region 3 AFL94_RS07400 PF14622 Ribonuclease-III-like AFL94_RS07400 PF00035 Double-stranded RNA binding motif AFL94_RS07405 PF06827 Zinc finger found in FPG and IleRS AFL94_RS07405 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFL94_RS07405 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFL94_RS07415 PF06470 SMC proteins Flexible Hinge Domain AFL94_RS07415 PF02463 RecF/RecN/SMC N terminal domain AFL94_RS07425 PF02881 SRP54-type protein, helical bundle domain AFL94_RS07425 PF00448 SRP54-type protein, GTPase domain AFL94_RS07430 PF01757 Acyltransferase family AFL94_RS07435 PF00909 Ammonium Transporter Family AFL94_RS07440 PF01551 Peptidase family M23 AFL94_RS07445 PF02881 SRP54-type protein, helical bundle domain AFL94_RS07445 PF00448 SRP54-type protein, GTPase domain AFL94_RS07445 PF02978 Signal peptide binding domain AFL94_RS07460 PF00501 AMP-binding enzyme AFL94_RS07460 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS07465 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS07465 PF00501 AMP-binding enzyme AFL94_RS07470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_RS07500 PF00565 Staphylococcal nuclease homologue AFL94_RS07505 PF13396 Phospholipase_D-nuclease N-terminal AFL94_RS07505 PF13091 PLD-like domain AFL94_RS07510 PF02803 Thiolase, C-terminal domain AFL94_RS07510 PF00108 Thiolase, N-terminal domain AFL94_RS07515 PF04261 Dyp-type peroxidase family AFL94_RS07515 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFL94_RS07520 PF13473 Cupredoxin-like domain AFL94_RS07520 PF09375 Imelysin AFL94_RS07525 PF03239 Iron permease FTR1 family AFL94_RS07565 PF00929 Exonuclease AFL94_RS07595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS07595 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS07595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS07600 PF01327 Polypeptide deformylase AFL94_RS07635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFL94_RS07635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFL94_RS07640 PF00403 Heavy-metal-associated domain AFL94_RS07640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS07640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_RS07645 PF03883 Peroxide stress protein YaaA AFL94_RS07655 PF01784 NIF3 (NGG1p interacting factor 3) AFL94_RS07660 PF01625 Peptide methionine sulfoxide reductase AFL94_RS07665 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_RS07670 PF00132 Bacterial transferase hexapeptide (six repeats) AFL94_RS07680 PF17760 UvrA interaction domain AFL94_RS07680 PF00005 ABC transporter AFL94_RS07680 PF17755 UvrA DNA-binding domain AFL94_RS07700 PF01938 TRAM domain AFL94_RS07700 PF05958 tRNA (Uracil-5-)-methyltransferase AFL94_RS07705 PF16884 N-terminal domain of oxidoreductase AFL94_RS07705 PF00107 Zinc-binding dehydrogenase AFL94_RS07725 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFL94_RS07725 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_RS07730 PF07729 FCD domain AFL94_RS07730 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS07735 PF02447 GntP family permease AFL94_RS07745 PF04226 Transglycosylase associated protein AFL94_RS07755 PF03006 Haemolysin-III related AFL94_RS07760 PF05532 CsbD-like AFL94_RS07770 PF01594 AI-2E family transporter AFL94_RS07780 PF00578 AhpC/TSA family AFL94_RS07785 PF11253 Protein of unknown function (DUF3052) AFL94_RS07790 PF17831 Pyruvate dehydrogenase E1 component middle domain AFL94_RS07790 PF00456 Transketolase, thiamine diphosphate binding domain AFL94_RS07795 PF13556 PucR C-terminal helix-turn-helix domain AFL94_RS07795 PF17853 GGDEF-like domain AFL94_RS07800 PF00698 Acyl transferase domain AFL94_RS07805 PF00550 Phosphopantetheine attachment site AFL94_RS07810 PF00109 Beta-ketoacyl synthase, N-terminal domain AFL94_RS07810 PF02801 Beta-ketoacyl synthase, C-terminal domain AFL94_RS07830 PF02899 Phage integrase, N-terminal SAM-like domain AFL94_RS07830 PF00589 Phage integrase family AFL94_RS07835 PF17782 DprA winged helix domain AFL94_RS07835 PF02481 DNA recombination-mediator protein A AFL94_RS07840 PF01078 Magnesium chelatase, subunit ChlI AFL94_RS07840 PF13335 Magnesium chelatase, subunit ChlI C-terminal AFL94_RS07845 PF02021 Uncharacterised protein family UPF0102 AFL94_RS07850 PF10611 Protein of unknown function (DUF2469) AFL94_RS07855 PF01351 Ribonuclease HII AFL94_RS07860 PF10502 Signal peptidase, peptidase S26 AFL94_RS07870 PF10502 Signal peptidase, peptidase S26 AFL94_RS07875 PF01245 Ribosomal protein L19 AFL94_RS07880 PF01746 tRNA (Guanine-1)-methyltransferase AFL94_RS07885 PF01782 RimM N-terminal domain AFL94_RS07895 PF00886 Ribosomal protein S16 AFL94_RS07900 PF01810 LysE type translocator AFL94_RS07935 PF00005 ABC transporter AFL94_RS07935 PF12848 ABC transporter AFL94_RS07995 PF00005 ABC transporter AFL94_RS08005 PF00588 SpoU rRNA Methylase family AFL94_RS08005 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFL94_RS08010 PF01197 Ribosomal protein L31 AFL94_RS08015 PF00107 Zinc-binding dehydrogenase AFL94_RS08015 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_RS08020 PF03099 Biotin/lipoate A/B protein ligase family AFL94_RS08030 PF11838 ERAP1-like C-terminal domain AFL94_RS08030 PF01433 Peptidase family M1 domain AFL94_RS08080 PF00108 Thiolase, N-terminal domain AFL94_RS08080 PF02803 Thiolase, C-terminal domain AFL94_RS08095 PF00534 Glycosyl transferases group 1 AFL94_RS08095 PF13439 Glycosyltransferase Family 4 AFL94_RS08100 PF00561 alpha/beta hydrolase fold AFL94_RS08110 PF04205 FMN-binding domain AFL94_RS08110 PF00890 FAD binding domain AFL94_RS08120 PF01566 Natural resistance-associated macrophage protein AFL94_RS08125 PF00486 Transcriptional regulatory protein, C terminal AFL94_RS08125 PF00072 Response regulator receiver domain AFL94_RS08130 PF00512 His Kinase A (phospho-acceptor) domain AFL94_RS08130 PF00672 HAMP domain AFL94_RS08130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS08140 PF07687 Peptidase dimerisation domain AFL94_RS08140 PF01546 Peptidase family M20/M25/M40 AFL94_RS08160 PF02673 Bacitracin resistance protein BacA AFL94_RS08165 PF01406 tRNA synthetases class I (C) catalytic domain AFL94_RS08175 PF13419 Haloacid dehalogenase-like hydrolase AFL94_RS08180 PF00571 CBS domain AFL94_RS08180 PF02163 Peptidase family M50 AFL94_RS08185 PF08704 tRNA methyltransferase complex GCD14 subunit AFL94_RS08190 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_RS08190 PF17758 Proteasomal ATPase OB N-terminal domain AFL94_RS08190 PF16450 Proteasomal ATPase OB C-terminal domain AFL94_RS08195 PF03136 Pup-ligase protein AFL94_RS08200 PF05639 Pup-like protein AFL94_RS08205 PF03136 Pup-ligase protein AFL94_RS08210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFL94_RS08210 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AFL94_RS08215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFL94_RS08230 PF02416 mttA/Hcf106 family AFL94_RS08235 PF00902 Sec-independent protein translocase protein (TatC) AFL94_RS08240 PF00271 Helicase conserved C-terminal domain AFL94_RS08240 PF08148 DSHCT (NUC185) domain AFL94_RS08240 PF00270 DEAD/DEAH box helicase AFL94_RS08250 PF00535 Glycosyl transferase family 2 AFL94_RS08255 PF13397 RNA polymerase-binding protein AFL94_RS08260 PF01145 SPFH domain / Band 7 family AFL94_RS08270 PF13649 Methyltransferase domain AFL94_RS08275 PF01327 Polypeptide deformylase AFL94_RS08295 PF01872 RibD C-terminal domain AFL94_RS08325 PF02885 Glycosyl transferase family, helical bundle domain AFL94_RS08325 PF00591 Glycosyl transferase family, a/b domain AFL94_RS08330 PF00510 Cytochrome c oxidase subunit III AFL94_RS08335 PF00034 Cytochrome c AFL94_RS08335 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFL94_RS08340 PF00355 Rieske [2Fe-2S] domain AFL94_RS08345 PF13631 Cytochrome b(N-terminal)/b6/petB AFL94_RS08355 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS08355 PF07702 UTRA domain AFL94_RS08360 PF12270 Cytochrome c oxidase subunit IV AFL94_RS08365 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFL94_RS08370 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFL94_RS08375 PF01521 Iron-sulphur cluster biosynthesis AFL94_RS08380 PF01546 Peptidase family M20/M25/M40 AFL94_RS08380 PF07687 Peptidase dimerisation domain AFL94_RS08390 PF01180 Dihydroorotate dehydrogenase AFL94_RS08395 PF12146 Serine aminopeptidase, S33 AFL94_RS08400 PF01255 Putative undecaprenyl diphosphate synthase AFL94_RS08405 PF02565 Recombination protein O C terminal AFL94_RS08405 PF11967 Recombination protein O N terminal AFL94_RS08410 PF00682 HMGL-like AFL94_RS08410 PF08502 LeuA allosteric (dimerisation) domain AFL94_RS08420 PF07650 KH domain AFL94_RS08420 PF01926 50S ribosome-binding GTPase AFL94_RS08425 PF01595 Cyclin M transmembrane N-terminal domain AFL94_RS08425 PF00571 CBS domain AFL94_RS08425 PF03471 Transporter associated domain AFL94_RS08430 PF02130 Uncharacterized protein family UPF0054 AFL94_RS08435 PF02562 PhoH-like protein AFL94_RS08445 PF04452 RNA methyltransferase AFL94_RS08450 PF01556 DnaJ C terminal domain AFL94_RS08450 PF00226 DnaJ domain AFL94_RS08450 PF00684 DnaJ central domain AFL94_RS08455 PF08220 DeoR-like helix-turn-helix domain AFL94_RS08455 PF01628 HrcA protein C terminal domain AFL94_RS08470 PF04055 Radical SAM superfamily AFL94_RS08475 PF00009 Elongation factor Tu GTP binding domain AFL94_RS08475 PF06421 GTP-binding protein LepA C-terminus AFL94_RS08475 PF00679 Elongation factor G C-terminus AFL94_RS08485 PF01649 Ribosomal protein S20 AFL94_RS08495 PF13567 Domain of unknown function (DUF4131) AFL94_RS08495 PF00753 Metallo-beta-lactamase superfamily AFL94_RS08495 PF03772 Competence protein AFL94_RS08505 PF02645 Uncharacterised protein, DegV family COG1307 AFL94_RS08510 PF09334 tRNA synthetases class I (M) AFL94_RS08510 PF08264 Anticodon-binding domain of tRNA AFL94_RS08510 PF00133 tRNA synthetases class I (I, L, M and V) AFL94_RS08510 PF13603 Leucyl-tRNA synthetase, Domain 2 AFL94_RS08525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFL94_RS08525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFL94_RS08530 PF00230 Major intrinsic protein AFL94_RS08535 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AFL94_RS08535 PF01266 FAD dependent oxidoreductase AFL94_RS08540 PF04198 Putative sugar-binding domain AFL94_RS08550 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AFL94_RS08550 PF00535 Glycosyl transferase family 2 AFL94_RS08555 PF17764 3′ DNA-binding domain (3′BD) AFL94_RS08560 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFL94_RS08560 PF02772 S-adenosylmethionine synthetase, central domain AFL94_RS08560 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFL94_RS08565 PF04127 DNA / pantothenate metabolism flavoprotein AFL94_RS08565 PF02441 Flavoprotein AFL94_RS08570 PF01192 RNA polymerase Rpb6 AFL94_RS08575 PF00625 Guanylate kinase AFL94_RS08585 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFL94_RS08590 PF02142 MGS-like domain AFL94_RS08590 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFL94_RS08590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_RS08595 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFL94_RS08595 PF00117 Glutamine amidotransferase class-I AFL94_RS08605 PF01979 Amidohydrolase family AFL94_RS08610 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFL94_RS08610 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFL94_RS08615 PF00156 Phosphoribosyl transferase domain AFL94_RS08620 PF01029 NusB family AFL94_RS08625 PF09285 Elongation factor P, C-terminal AFL94_RS08625 PF08207 Elongation factor P (EF-P) KOW-like domain AFL94_RS08625 PF01132 Elongation factor P (EF-P) OB domain AFL94_RS08635 PF01761 3-dehydroquinate synthase AFL94_RS08640 PF01202 Shikimate kinase AFL94_RS08645 PF01264 Chorismate synthase AFL94_RS08650 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFL94_RS08650 PF01488 Shikimate / quinate 5-dehydrogenase AFL94_RS08650 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_RS08660 PF03652 Holliday junction resolvase AFL94_RS08665 PF02272 DHHA1 domain AFL94_RS08665 PF01411 tRNA synthetases class II (A) AFL94_RS08665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFL94_RS08690 PF01551 Peptidase family M23 AFL94_RS08690 PF08460 Bacterial SH3 domain AFL94_RS08910 PF00436 Single-strand binding protein family AFL94_RS08960 PF00589 Phage integrase family AFL94_RS08960 PF02899 Phage integrase, N-terminal SAM-like domain AFL94_RS08965 PF00163 Ribosomal protein S4/S9 N-terminal domain AFL94_RS08965 PF01479 S4 domain AFL94_RS08970 PF12002 MgsA AAA+ ATPase C terminal AFL94_RS08970 PF16193 AAA C-terminal domain AFL94_RS08970 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_RS08975 PF02580 D-Tyr-tRNA(Tyr) deacylase AFL94_RS08990 PF02938 GAD domain AFL94_RS08990 PF00152 tRNA synthetases class II (D, K and N) AFL94_RS08990 PF01336 OB-fold nucleic acid binding domain AFL94_RS08995 PF13393 Histidyl-tRNA synthetase AFL94_RS08995 PF03129 Anticodon binding domain AFL94_RS09000 PF03993 Domain of Unknown Function (DUF349) AFL94_RS09010 PF04607 Region found in RelA / SpoT proteins AFL94_RS09010 PF02824 TGS domain AFL94_RS09010 PF13291 ACT domain AFL94_RS09015 PF07549 SecD/SecF GG Motif AFL94_RS09015 PF02355 Protein export membrane protein AFL94_RS09020 PF02355 Protein export membrane protein AFL94_RS09020 PF07549 SecD/SecF GG Motif AFL94_RS09025 PF02699 Preprotein translocase subunit AFL94_RS09030 PF05491 RuvB C-terminal winged helix domain AFL94_RS09030 PF17864 RuvB AAA lid domain AFL94_RS09030 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFL94_RS09035 PF01330 RuvA N terminal domain AFL94_RS09035 PF07499 RuvA, C-terminal domain AFL94_RS09040 PF02075 Crossover junction endodeoxyribonuclease RuvC AFL94_RS09045 PF01709 Transcriptional regulator AFL94_RS09050 PF01174 SNO glutamine amidotransferase family AFL94_RS09060 PF01432 Peptidase family M3 AFL94_RS09065 PF00583 Acetyltransferase (GNAT) family AFL94_RS09080 PF01680 SOR/SNZ family AFL94_RS09085 PF03009 Glycerophosphoryl diester phosphodiesterase family AFL94_RS09090 PF13416 Bacterial extracellular solute-binding protein AFL94_RS09095 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS09100 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS09105 PF00455 DeoR C terminal sensor domain AFL94_RS09105 PF08220 DeoR-like helix-turn-helix domain AFL94_RS09110 PF13419 Haloacid dehalogenase-like hydrolase AFL94_RS09120 PF13732 Domain of unknown function (DUF4162) AFL94_RS09120 PF00005 ABC transporter AFL94_RS09140 PF00067 Cytochrome P450 AFL94_RS09145 PF00155 Aminotransferase class I and II AFL94_RS09150 PF00202 Aminotransferase class-III AFL94_RS09155 PF06968 Biotin and Thiamin Synthesis associated domain AFL94_RS09155 PF04055 Radical SAM superfamily AFL94_RS09160 PF01230 HIT domain AFL94_RS09165 PF03129 Anticodon binding domain AFL94_RS09165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFL94_RS09165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFL94_RS09195 PF04229 GrpB protein AFL94_RS09200 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFL94_RS09200 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFL94_RS09200 PF01336 OB-fold nucleic acid binding domain AFL94_RS09200 PF02811 PHP domain AFL94_RS09200 PF14579 Helix-hairpin-helix motif AFL94_RS09220 PF00083 Sugar (and other) transporter AFL94_RS09220 PF07690 Major Facilitator Superfamily AFL94_RS09225 PF00248 Aldo/keto reductase family AFL94_RS09230 PF00107 Zinc-binding dehydrogenase AFL94_RS09230 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_RS09235 PF00753 Metallo-beta-lactamase superfamily AFL94_RS09245 PF02586 SOS response associated peptidase (SRAP) AFL94_RS09250 PF00462 Glutaredoxin AFL94_RS09280 PF00313 'Cold-shock' DNA-binding domain AFL94_RS09285 PF00083 Sugar (and other) transporter AFL94_RS09285 PF07690 Major Facilitator Superfamily AFL94_RS09290 PF00440 Bacterial regulatory proteins, tetR family AFL94_RS09290 PF16859 Tetracyclin repressor-like, C-terminal domain AFL94_RS09295 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFL94_RS09295 PF00391 PEP-utilising enzyme, mobile domain AFL94_RS09300 PF00268 Ribonucleotide reductase, small chain AFL94_RS09305 PF00317 Ribonucleotide reductase, all-alpha domain AFL94_RS09305 PF02867 Ribonucleotide reductase, barrel domain AFL94_RS09305 PF08343 Ribonucleotide reductase N-terminal AFL94_RS09310 PF07972 NrdI Flavodoxin like AFL94_RS09320 PF01168 Alanine racemase, N-terminal domain AFL94_RS09325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_RS09325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS09325 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_RS09330 PF01168 Alanine racemase, N-terminal domain AFL94_RS09340 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_RS09355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_RS09355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_RS09375 PF01425 Amidase AFL94_RS09385 PF12848 ABC transporter AFL94_RS09385 PF00005 ABC transporter AFL94_RS09385 PF16326 ABC transporter C-terminal domain AFL94_RS09390 PF02293 AmiS/UreI family transporter AFL94_RS09395 PF00890 FAD binding domain AFL94_RS09395 PF02910 Fumarate reductase flavoprotein C-term AFL94_RS09400 PF03466 LysR substrate binding domain AFL94_RS09400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS09425 PF00155 Aminotransferase class I and II AFL94_RS09430 PF00324 Amino acid permease AFL94_RS09450 PF01544 CorA-like Mg2+ transporter protein AFL94_RS09505 PF01467 Cytidylyltransferase-like AFL94_RS09515 PF00171 Aldehyde dehydrogenase family AFL94_RS09520 PF00696 Amino acid kinase family AFL94_RS09520 PF01472 PUA domain AFL94_RS09525 PF09269 Domain of unknown function (DUF1967) AFL94_RS09525 PF01926 50S ribosome-binding GTPase AFL94_RS09525 PF01018 GTP1/OBG AFL94_RS09530 PF01016 Ribosomal L27 protein AFL94_RS09535 PF00829 Ribosomal prokaryotic L21 protein AFL94_RS09540 PF10150 Ribonuclease E/G family AFL94_RS09555 PF01636 Phosphotransferase enzyme family AFL94_RS09560 PF01594 AI-2E family transporter AFL94_RS09575 PF00334 Nucleoside diphosphate kinase AFL94_RS09585 PF02875 Mur ligase family, glutamate ligase domain AFL94_RS09585 PF08245 Mur ligase middle domain AFL94_RS09590 PF08264 Anticodon-binding domain of tRNA AFL94_RS09590 PF00133 tRNA synthetases class I (I, L, M and V) AFL94_RS09605 PF07730 Histidine kinase AFL94_RS09605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS09610 PF00072 Response regulator receiver domain AFL94_RS09610 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS09615 PF03176 MMPL family AFL94_RS09625 PF01047 MarR family AFL94_RS09630 PF02566 OsmC-like protein AFL94_RS09645 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS09650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFL94_RS09660 PF00005 ABC transporter AFL94_RS09670 PF00009 Elongation factor Tu GTP binding domain AFL94_RS09675 PF01507 Phosphoadenosine phosphosulfate reductase family AFL94_RS09680 PF01507 Phosphoadenosine phosphosulfate reductase family AFL94_RS09685 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFL94_RS09685 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFL94_RS09695 PF00106 short chain dehydrogenase AFL94_RS09710 PF00133 tRNA synthetases class I (I, L, M and V) AFL94_RS09710 PF08264 Anticodon-binding domain of tRNA AFL94_RS09720 PF01323 DSBA-like thioredoxin domain AFL94_RS09725 PF06689 ClpX C4-type zinc finger AFL94_RS09725 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_RS09725 PF07724 AAA domain (Cdc48 subfamily) AFL94_RS09730 PF00574 Clp protease AFL94_RS09735 PF00574 Clp protease AFL94_RS09740 PF05697 Bacterial trigger factor protein (TF) AFL94_RS09740 PF05698 Bacterial trigger factor protein (TF) C-terminus AFL94_RS09740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFL94_RS09760 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFL94_RS09760 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFL94_RS09760 PF06827 Zinc finger found in FPG and IleRS AFL94_RS09765 PF02502 Ribose/Galactose Isomerase AFL94_RS09770 PF11838 ERAP1-like C-terminal domain AFL94_RS09770 PF01433 Peptidase family M1 domain AFL94_RS09780 PF01152 Bacterial-like globin AFL94_RS09795 PF00376 MerR family regulatory protein AFL94_RS09795 PF09278 MerR, DNA binding AFL94_RS09805 PF00005 ABC transporter AFL94_RS09805 PF12848 ABC transporter AFL94_RS09810 PF00436 Single-strand binding protein family AFL94_RS09825 PF00890 FAD binding domain AFL94_RS09830 PF07690 Major Facilitator Superfamily AFL94_RS09835 PF13404 AsnC-type helix-turn-helix domain AFL94_RS09835 PF01037 Lrp/AsnC ligand binding domain AFL94_RS09840 PF01810 LysE type translocator AFL94_RS09845 PF00005 ABC transporter AFL94_RS09850 PF02361 Cobalt transport protein AFL94_RS09855 PF02632 BioY family AFL94_RS09860 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS09860 PF00501 AMP-binding enzyme AFL94_RS09865 PF00108 Thiolase, N-terminal domain AFL94_RS09865 PF02803 Thiolase, C-terminal domain AFL94_RS09870 PF01883 Iron-sulfur cluster assembly protein AFL94_RS09875 PF01883 Iron-sulfur cluster assembly protein AFL94_RS09880 PF00005 ABC transporter AFL94_RS09885 PF01458 Uncharacterized protein family (UPF0051) AFL94_RS09890 PF01458 Uncharacterized protein family (UPF0051) AFL94_RS09900 PF00005 ABC transporter AFL94_RS09925 PF01040 UbiA prenyltransferase family AFL94_RS09930 PF00456 Transketolase, thiamine diphosphate binding domain AFL94_RS09930 PF02780 Transketolase, C-terminal domain AFL94_RS09930 PF02779 Transketolase, pyrimidine binding domain AFL94_RS09935 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFL94_RS09940 PF00342 Phosphoglucose isomerase AFL94_RS09945 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFL94_RS09945 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFL94_RS09955 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFL94_RS09960 PF01266 FAD dependent oxidoreductase AFL94_RS09975 PF03840 Preprotein translocase SecG subunit AFL94_RS09980 PF00121 Triosephosphate isomerase AFL94_RS09985 PF00162 Phosphoglycerate kinase AFL94_RS09990 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFL94_RS09990 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFL94_RS09995 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFL94_RS09995 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFL94_RS10000 PF02650 WhiA C-terminal HTH domain AFL94_RS10000 PF14527 WhiA LAGLIDADG-like domain AFL94_RS10000 PF10298 WhiA N-terminal LAGLIDADG-like domain AFL94_RS10005 PF01933 Uncharacterised protein family UPF0052 AFL94_RS10010 PF03668 P-loop ATPase protein family AFL94_RS10015 PF02151 UvrB/uvrC motif AFL94_RS10015 PF12826 Helix-hairpin-helix motif AFL94_RS10015 PF01541 GIY-YIG catalytic domain AFL94_RS10015 PF08459 UvrC Helix-hairpin-helix N-terminal AFL94_RS10020 PF01553 Acyltransferase AFL94_RS10025 PF13419 Haloacid dehalogenase-like hydrolase AFL94_RS10030 PF17760 UvrA interaction domain AFL94_RS10030 PF17755 UvrA DNA-binding domain AFL94_RS10030 PF00005 ABC transporter AFL94_RS10065 PF08148 DSHCT (NUC185) domain AFL94_RS10065 PF00270 DEAD/DEAH box helicase AFL94_RS10065 PF00271 Helicase conserved C-terminal domain AFL94_RS10115 PF00561 alpha/beta hydrolase fold AFL94_RS10120 PF01047 MarR family AFL94_RS10125 PF03741 Integral membrane protein TerC family AFL94_RS10130 PF17757 UvrB interaction domain AFL94_RS10130 PF04851 Type III restriction enzyme, res subunit AFL94_RS10130 PF02151 UvrB/uvrC motif AFL94_RS10130 PF00271 Helicase conserved C-terminal domain AFL94_RS10130 PF12344 Ultra-violet resistance protein B AFL94_RS10155 PF01121 Dephospho-CoA kinase AFL94_RS10165 PF01205 Uncharacterized protein family UPF0029 AFL94_RS10165 PF09186 Domain of unknown function (DUF1949) AFL94_RS10170 PF05175 Methyltransferase small domain AFL94_RS10190 PF00575 S1 RNA binding domain AFL94_RS10200 PF17668 Acetyltransferase (GNAT) domain AFL94_RS10200 PF13530 Sterol carrier protein domain AFL94_RS10205 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFL94_RS10205 PF01367 5'-3' exonuclease, C-terminal SAM fold AFL94_RS10205 PF00476 DNA polymerase family A AFL94_RS10210 PF03061 Thioesterase superfamily AFL94_RS10215 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_RS10215 PF01872 RibD C-terminal domain AFL94_RS10225 PF01384 Phosphate transporter family AFL94_RS10230 PF00072 Response regulator receiver domain AFL94_RS10230 PF03861 ANTAR domain AFL94_RS10240 PF00224 Pyruvate kinase, barrel domain AFL94_RS10240 PF02887 Pyruvate kinase, alpha/beta domain AFL94_RS10245 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS10245 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFL94_RS10250 PF00310 Glutamine amidotransferases class-II AFL94_RS10250 PF04898 Glutamate synthase central domain AFL94_RS10250 PF01645 Conserved region in glutamate synthase AFL94_RS10250 PF01493 GXGXG motif AFL94_RS10255 PF01790 Prolipoprotein diacylglyceryl transferase AFL94_RS10260 PF00290 Tryptophan synthase alpha chain AFL94_RS10265 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_RS10270 PF00218 Indole-3-glycerol phosphate synthase AFL94_RS10285 PF00425 chorismate binding enzyme AFL94_RS10285 PF04715 Anthranilate synthase component I, N terminal region AFL94_RS10290 PF01502 Phosphoribosyl-AMP cyclohydrolase AFL94_RS10300 PF00977 Histidine biosynthesis protein AFL94_RS10305 PF01634 ATP phosphoribosyltransferase AFL94_RS10305 PF08029 HisG, C-terminal domain AFL94_RS10310 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFL94_RS10315 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFL94_RS10320 PF00925 GTP cyclohydrolase II AFL94_RS10320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFL94_RS10325 PF00677 Lumazine binding domain AFL94_RS10330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_RS10330 PF01872 RibD C-terminal domain AFL94_RS10340 PF00834 Ribulose-phosphate 3 epimerase family AFL94_RS10345 PF01029 NusB family AFL94_RS10345 PF01189 16S rRNA methyltransferase RsmB/F AFL94_RS10350 PF02911 Formyl transferase, C-terminal domain AFL94_RS10350 PF00551 Formyl transferase AFL94_RS10355 PF01327 Polypeptide deformylase AFL94_RS10410 PF03594 Benzoate membrane transport protein AFL94_RS10415 PF08299 Bacterial dnaA protein helix-turn-helix AFL94_RS10415 PF00308 Bacterial dnaA protein AFL94_RS10415 PF11638 DnaA N-terminal domain AFL94_RS10420 PF00581 Rhodanese-like domain AFL94_RS10425 PF02657 Fe-S metabolism associated domain AFL94_RS10430 PF04073 Aminoacyl-tRNA editing domain AFL94_RS10440 PF01641 SelR domain AFL94_RS10450 PF00106 short chain dehydrogenase AFL94_RS10455 PF01212 Beta-eliminating lyase AFL94_RS10470 PF00108 Thiolase, N-terminal domain AFL94_RS10470 PF02803 Thiolase, C-terminal domain AFL94_RS10475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_RS10475 PF00378 Enoyl-CoA hydratase/isomerase AFL94_RS10475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_RS10490 PF00248 Aldo/keto reductase family AFL94_RS10495 PF00764 Arginosuccinate synthase AFL94_RS10520 PF04167 Protein of unknown function (DUF402) AFL94_RS10525 PF02779 Transketolase, pyrimidine binding domain AFL94_RS10525 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFL94_RS10525 PF02780 Transketolase, C-terminal domain AFL94_RS10530 PF05199 GMC oxidoreductase AFL94_RS10570 PF00694 Aconitase C-terminal domain AFL94_RS10570 PF00330 Aconitase family (aconitate hydratase) AFL94_RS10575 PF05958 tRNA (Uracil-5-)-methyltransferase AFL94_RS10580 PF13520 Amino acid permease AFL94_RS10585 PF02080 TrkA-C domain AFL94_RS10585 PF02254 TrkA-N domain AFL94_RS10590 PF02254 TrkA-N domain AFL94_RS10590 PF02080 TrkA-C domain AFL94_RS10610 PF00692 dUTPase AFL94_RS10625 PF11268 Protein of unknown function (DUF3071) AFL94_RS10640 PF13302 Acetyltransferase (GNAT) domain AFL94_RS10640 PF00027 Cyclic nucleotide-binding domain AFL94_RS10645 PF00521 DNA gyrase/topoisomerase IV, subunit A AFL94_RS10645 PF03989 DNA gyrase C-terminal domain, beta-propeller AFL94_RS10650 PF00664 ABC transporter transmembrane region AFL94_RS10650 PF00005 ABC transporter AFL94_RS10655 PF02322 Cytochrome bd terminal oxidase subunit II AFL94_RS10660 PF01654 Cytochrome bd terminal oxidase subunit I AFL94_RS10665 PF03965 Penicillinase repressor AFL94_RS10675 PF01751 Toprim domain AFL94_RS10675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS10675 PF00204 DNA gyrase B AFL94_RS10675 PF00986 DNA gyrase B subunit, carboxyl terminus AFL94_RS10680 PF04545 Sigma-70, region 4 AFL94_RS10680 PF04539 Sigma-70 region 3 AFL94_RS10680 PF04542 Sigma-70 region 2 AFL94_RS10680 PF00140 Sigma-70 factor, region 1.2 AFL94_RS10700 PF00883 Cytosol aminopeptidase family, catalytic domain AFL94_RS10700 PF02789 Cytosol aminopeptidase family, N-terminal domain AFL94_RS10705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_RS10705 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS10710 PF00364 Biotin-requiring enzyme AFL94_RS10710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_RS10710 PF02817 e3 binding domain AFL94_RS10720 PF03793 PASTA domain AFL94_RS10720 PF00069 Protein kinase domain AFL94_RS10725 PF03099 Biotin/lipoate A/B protein ligase family AFL94_RS10730 PF04055 Radical SAM superfamily AFL94_RS10730 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AFL94_RS10745 PF00120 Glutamine synthetase, catalytic domain AFL94_RS10745 PF03951 Glutamine synthetase, beta-Grasp domain AFL94_RS10755 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFL94_RS10765 PF08335 GlnD PII-uridylyltransferase AFL94_RS10765 PF03710 Glutamate-ammonia ligase adenylyltransferase AFL94_RS10770 PF00120 Glutamine synthetase, catalytic domain AFL94_RS10770 PF03951 Glutamine synthetase, beta-Grasp domain AFL94_RS10775 PF02548 Ketopantoate hydroxymethyltransferase AFL94_RS10785 PF00557 Metallopeptidase family M24 AFL94_RS10790 PF03477 ATP cone domain AFL94_RS10795 PF00815 Histidinol dehydrogenase AFL94_RS10800 PF14579 Helix-hairpin-helix motif AFL94_RS10800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFL94_RS10800 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFL94_RS10800 PF02811 PHP domain AFL94_RS10805 PF00849 RNA pseudouridylate synthase AFL94_RS10810 PF01252 Signal peptidase (SPase) II AFL94_RS10815 PF05103 DivIVA protein AFL94_RS10825 PF04472 Cell division protein SepF AFL94_RS10830 PF02578 Multi-copper polyphenol oxidoreductase laccase AFL94_RS10835 PF00091 Tubulin/FtsZ family, GTPase domain AFL94_RS10835 PF12327 FtsZ family, C-terminal domain AFL94_RS10840 PF08478 POTRA domain, FtsQ-type AFL94_RS10840 PF03799 Cell division protein FtsQ AFL94_RS10845 PF08245 Mur ligase middle domain AFL94_RS10845 PF02875 Mur ligase family, glutamate ligase domain AFL94_RS10845 PF01225 Mur ligase family, catalytic domain AFL94_RS10850 PF03033 Glycosyltransferase family 28 N-terminal domain AFL94_RS10850 PF04101 Glycosyltransferase family 28 C-terminal domain AFL94_RS10855 PF01098 Cell cycle protein AFL94_RS10860 PF08245 Mur ligase middle domain AFL94_RS10860 PF02875 Mur ligase family, glutamate ligase domain AFL94_RS10865 PF00953 Glycosyl transferase family 4 AFL94_RS10870 PF01225 Mur ligase family, catalytic domain AFL94_RS10870 PF02875 Mur ligase family, glutamate ligase domain AFL94_RS10870 PF08245 Mur ligase middle domain AFL94_RS10875 PF08245 Mur ligase middle domain AFL94_RS10875 PF02875 Mur ligase family, glutamate ligase domain AFL94_RS10875 PF01225 Mur ligase family, catalytic domain AFL94_RS10880 PF03717 Penicillin-binding Protein dimerisation domain AFL94_RS10880 PF00905 Penicillin binding protein transpeptidase domain AFL94_RS10890 PF01795 MraW methylase family AFL94_RS10895 PF02381 MraZ protein, putative antitoxin-like AFL94_RS10905 PF11799 impB/mucB/samB family C-terminal domain AFL94_RS10905 PF00817 impB/mucB/samB family AFL94_RS10910 PF00348 Polyprenyl synthetase AFL94_RS10920 PF05257 CHAP domain AFL94_RS10920 PF01476 LysM domain AFL94_RS10925 PF12282 Signal transduction histidine kinase AFL94_RS10925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS10925 PF07568 Histidine kinase AFL94_RS10930 PF05088 Bacterial NAD-glutamate dehydrogenase AFL94_RS10960 PF01043 SecA preprotein cross-linking domain AFL94_RS10960 PF07517 SecA DEAD-like domain AFL94_RS10960 PF07516 SecA Wing and Scaffold domain AFL94_RS10965 PF06224 Winged helix DNA-binding domain AFL94_RS10970 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AFL94_RS10970 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFL94_RS10975 PF00156 Phosphoribosyl transferase domain AFL94_RS10980 PF10646 Sporulation and spore germination AFL94_RS10980 PF10647 Lipoprotein LpqB beta-propeller domain AFL94_RS10985 PF00512 His Kinase A (phospho-acceptor) domain AFL94_RS10985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS10985 PF00672 HAMP domain AFL94_RS10990 PF00486 Transcriptional regulatory protein, C terminal AFL94_RS10990 PF00072 Response regulator receiver domain AFL94_RS11005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_RS11005 PF00005 ABC transporter AFL94_RS11010 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_RS11010 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS11015 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS11020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_RS11020 PF12793 Sugar transport-related sRNA regulator N-term AFL94_RS11035 PF17191 RecG wedge domain AFL94_RS11035 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AFL94_RS11035 PF00270 DEAD/DEAH box helicase AFL94_RS11040 PF00296 Luciferase-like monooxygenase AFL94_RS11050 PF07732 Multicopper oxidase AFL94_RS11075 PF00266 Aminotransferase class-V AFL94_RS11085 PF00809 Pterin binding enzyme AFL94_RS11095 PF00781 Diacylglycerol kinase catalytic domain AFL94_RS11105 PF00588 SpoU rRNA Methylase family AFL94_RS11120 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_RS11120 PF01012 Electron transfer flavoprotein domain AFL94_RS11125 PF01012 Electron transfer flavoprotein domain AFL94_RS11130 PF13180 PDZ domain AFL94_RS11140 PF04012 PspA/IM30 family AFL94_RS11160 PF03699 Uncharacterised protein family (UPF0182) AFL94_RS11165 PF13180 PDZ domain AFL94_RS11165 PF05362 Lon protease (S16) C-terminal proteolytic domain AFL94_RS11180 PF13361 UvrD-like helicase C-terminal domain AFL94_RS11180 PF00570 HRDC domain AFL94_RS11180 PF00580 UvrD/REP helicase N-terminal domain AFL94_RS11185 PF09297 NADH pyrophosphatase zinc ribbon domain AFL94_RS11185 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AFL94_RS11185 PF00293 NUDIX domain AFL94_RS11195 PF13361 UvrD-like helicase C-terminal domain AFL94_RS11195 PF00580 UvrD/REP helicase N-terminal domain AFL94_RS11200 PF00580 UvrD/REP helicase N-terminal domain AFL94_RS11200 PF13361 UvrD-like helicase C-terminal domain AFL94_RS11215 PF09383 NIL domain AFL94_RS11215 PF00005 ABC transporter AFL94_RS11220 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS11225 PF03180 NLPA lipoprotein AFL94_RS11230 PF13520 Amino acid permease AFL94_RS11235 PF00202 Aminotransferase class-III AFL94_RS11240 PF00490 Delta-aminolevulinic acid dehydratase AFL94_RS11250 PF03900 Porphobilinogen deaminase, C-terminal domain AFL94_RS11250 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFL94_RS11255 PF00762 Ferrochelatase AFL94_RS11260 PF06778 Chlorite dismutase AFL94_RS11265 PF01593 Flavin containing amine oxidoreductase AFL94_RS11270 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFL94_RS11275 PF01488 Shikimate / quinate 5-dehydrogenase AFL94_RS11275 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFL94_RS11275 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFL94_RS11280 PF08362 YcdC-like protein, C-terminal region AFL94_RS11280 PF00440 Bacterial regulatory proteins, tetR family AFL94_RS11295 PF00270 DEAD/DEAH box helicase AFL94_RS11295 PF00271 Helicase conserved C-terminal domain AFL94_RS11300 PF01555 DNA methylase AFL94_RS11310 PF05195 Aminopeptidase P, N-terminal domain AFL94_RS11310 PF00557 Metallopeptidase family M24 AFL94_RS11320 PF01769 Divalent cation transporter AFL94_RS11320 PF00571 CBS domain AFL94_RS11320 PF03448 MgtE intracellular N domain AFL94_RS11330 PF01883 Iron-sulfur cluster assembly protein AFL94_RS11330 PF10609 NUBPL iron-transfer P-loop NTPase AFL94_RS11340 PF04542 Sigma-70 region 2 AFL94_RS11340 PF08281 Sigma-70, region 4 AFL94_RS11345 PF01596 O-methyltransferase AFL94_RS11355 PF03641 Possible lysine decarboxylase AFL94_RS11360 PF00005 ABC transporter AFL94_RS11365 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFL94_RS11370 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS11375 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS11380 PF01546 Peptidase family M20/M25/M40 AFL94_RS11380 PF07687 Peptidase dimerisation domain AFL94_RS11385 PF14602 Hexapeptide repeat of succinyl-transferase AFL94_RS11385 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AFL94_RS11395 PF00285 Citrate synthase, C-terminal domain AFL94_RS11400 PF00155 Aminotransferase class I and II AFL94_RS11405 PF00037 4Fe-4S binding domain AFL94_RS11415 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFL94_RS11430 PF03144 Elongation factor Tu domain 2 AFL94_RS11430 PF00679 Elongation factor G C-terminus AFL94_RS11430 PF14492 Elongation Factor G, domain II AFL94_RS11430 PF00009 Elongation factor Tu GTP binding domain AFL94_RS11440 PF00581 Rhodanese-like domain AFL94_RS11440 PF00899 ThiF family AFL94_RS11445 PF05690 Thiazole biosynthesis protein ThiG AFL94_RS11455 PF05690 Thiazole biosynthesis protein ThiG AFL94_RS11455 PF01266 FAD dependent oxidoreductase AFL94_RS11475 PF12697 Alpha/beta hydrolase family AFL94_RS11490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_RS11490 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS11505 PF03595 Voltage-dependent anion channel AFL94_RS11520 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_RS11525 PF01758 Sodium Bile acid symporter family AFL94_RS11530 PF01022 Bacterial regulatory protein, arsR family AFL94_RS11560 PF00753 Metallo-beta-lactamase superfamily AFL94_RS11560 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFL94_RS11585 PF08768 Domain of unknown function (DUF1794) AFL94_RS11595 PF01479 S4 domain AFL94_RS11595 PF00849 RNA pseudouridylate synthase AFL94_RS11610 PF00535 Glycosyl transferase family 2 AFL94_RS11630 PF13091 PLD-like domain AFL94_RS11630 PF13087 AAA domain AFL94_RS11645 PF06071 Protein of unknown function (DUF933) AFL94_RS11645 PF01926 50S ribosome-binding GTPase AFL94_RS11650 PF02401 LytB protein AFL94_RS11655 PF02601 Exonuclease VII, large subunit AFL94_RS11655 PF13742 OB-fold nucleic acid binding domain AFL94_RS11660 PF02609 Exonuclease VII small subunit AFL94_RS11670 PF03976 Polyphosphate kinase 2 (PPK2) AFL94_RS11680 PF00155 Aminotransferase class I and II AFL94_RS11695 PF01037 Lrp/AsnC ligand binding domain AFL94_RS11705 PF13302 Acetyltransferase (GNAT) domain AFL94_RS11710 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFL94_RS11730 PF02540 NAD synthase AFL94_RS11730 PF00958 GMP synthase C terminal domain AFL94_RS11730 PF00117 Glutamine amidotransferase class-I AFL94_RS11745 PF00478 IMP dehydrogenase / GMP reductase domain AFL94_RS11765 PF08241 Methyltransferase domain AFL94_RS11765 PF13649 Methyltransferase domain AFL94_RS11770 PF00478 IMP dehydrogenase / GMP reductase domain AFL94_RS11770 PF00571 CBS domain AFL94_RS11775 PF01757 Acyltransferase family AFL94_RS11790 PF00118 TCP-1/cpn60 chaperonin family AFL94_RS11795 PF00166 Chaperonin 10 Kd subunit AFL94_RS11800 PF00324 Amino acid permease AFL94_RS11815 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFL94_RS11820 PF00814 Glycoprotease family AFL94_RS11825 PF00583 Acetyltransferase (GNAT) family AFL94_RS11830 PF00814 Glycoprotease family AFL94_RS11830 PF00583 Acetyltransferase (GNAT) family AFL94_RS11835 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFL94_RS11840 PF01168 Alanine racemase, N-terminal domain AFL94_RS11840 PF00842 Alanine racemase, C-terminal domain AFL94_RS11845 PF01741 Large-conductance mechanosensitive channel, MscL AFL94_RS11850 PF00485 Phosphoribulokinase / Uridine kinase family AFL94_RS11855 PF01380 SIS domain AFL94_RS11860 PF01648 4'-phosphopantetheinyl transferase superfamily AFL94_RS11865 PF01256 Carbohydrate kinase AFL94_RS11865 PF03853 YjeF-related protein N-terminus AFL94_RS11890 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFL94_RS11890 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFL94_RS11890 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFL94_RS11895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFL94_RS11895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFL94_RS11895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFL94_RS11895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFL94_RS11900 PF00380 Ribosomal protein S9/S16 AFL94_RS11905 PF00572 Ribosomal protein L13 AFL94_RS11910 PF01416 tRNA pseudouridine synthase AFL94_RS11920 PF01196 Ribosomal protein L17 AFL94_RS11925 PF01000 RNA polymerase Rpb3/RpoA insert domain AFL94_RS11925 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFL94_RS11925 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFL94_RS11930 PF00411 Ribosomal protein S11 AFL94_RS11935 PF00416 Ribosomal protein S13/S18 AFL94_RS11940 PF01176 Translation initiation factor 1A / IF-1 AFL94_RS11945 PF00557 Metallopeptidase family M24 AFL94_RS11955 PF00344 SecY translocase AFL94_RS11960 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AFL94_RS11965 PF00327 Ribosomal protein L30p/L7e AFL94_RS11970 PF00333 Ribosomal protein S5, N-terminal domain AFL94_RS11970 PF03719 Ribosomal protein S5, C-terminal domain AFL94_RS11975 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AFL94_RS11980 PF00347 Ribosomal protein L6 AFL94_RS11985 PF00410 Ribosomal protein S8 AFL94_RS11990 PF00673 ribosomal L5P family C-terminus AFL94_RS11990 PF00281 Ribosomal protein L5 AFL94_RS11995 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AFL94_RS12000 PF00238 Ribosomal protein L14p/L23e AFL94_RS12025 PF00366 Ribosomal protein S17 AFL94_RS12030 PF00831 Ribosomal L29 protein AFL94_RS12035 PF00252 Ribosomal protein L16p/L10e AFL94_RS12040 PF00189 Ribosomal protein S3, C-terminal domain AFL94_RS12040 PF07650 KH domain AFL94_RS12045 PF00237 Ribosomal protein L22p/L17e AFL94_RS12050 PF00203 Ribosomal protein S19 AFL94_RS12055 PF00181 Ribosomal Proteins L2, RNA binding domain AFL94_RS12055 PF03947 Ribosomal Proteins L2, C-terminal domain AFL94_RS12060 PF00276 Ribosomal protein L23 AFL94_RS12065 PF00573 Ribosomal protein L4/L1 family AFL94_RS12070 PF00297 Ribosomal protein L3 AFL94_RS12075 PF00338 Ribosomal protein S10p/S20e AFL94_RS12085 PF00009 Elongation factor Tu GTP binding domain AFL94_RS12085 PF03144 Elongation factor Tu domain 2 AFL94_RS12085 PF03143 Elongation factor Tu C-terminal domain AFL94_RS12090 PF03144 Elongation factor Tu domain 2 AFL94_RS12090 PF00009 Elongation factor Tu GTP binding domain AFL94_RS12090 PF14492 Elongation Factor G, domain II AFL94_RS12090 PF03764 Elongation factor G, domain IV AFL94_RS12090 PF00679 Elongation factor G C-terminus AFL94_RS12095 PF00177 Ribosomal protein S7p/S5e AFL94_RS12100 PF00164 Ribosomal protein S12/S23 AFL94_RS12110 PF00623 RNA polymerase Rpb1, domain 2 AFL94_RS12110 PF05000 RNA polymerase Rpb1, domain 4 AFL94_RS12110 PF04997 RNA polymerase Rpb1, domain 1 AFL94_RS12110 PF04983 RNA polymerase Rpb1, domain 3 AFL94_RS12110 PF04998 RNA polymerase Rpb1, domain 5 AFL94_RS12115 PF04560 RNA polymerase Rpb2, domain 7 AFL94_RS12115 PF00562 RNA polymerase Rpb2, domain 6 AFL94_RS12115 PF10385 RNA polymerase beta subunit external 1 domain AFL94_RS12115 PF04565 RNA polymerase Rpb2, domain 3 AFL94_RS12115 PF04561 RNA polymerase Rpb2, domain 2 AFL94_RS12115 PF04563 RNA polymerase beta subunit AFL94_RS12125 PF01757 Acyltransferase family AFL94_RS12130 PF16320 Ribosomal protein L7/L12 dimerisation domain AFL94_RS12130 PF00542 Ribosomal protein L7/L12 C-terminal domain AFL94_RS12135 PF00466 Ribosomal protein L10 AFL94_RS12140 PF00687 Ribosomal protein L1p/L10e family AFL94_RS12145 PF00298 Ribosomal protein L11, RNA binding domain AFL94_RS12145 PF03946 Ribosomal protein L11, N-terminal domain AFL94_RS12150 PF02357 Transcription termination factor nusG AFL94_RS12155 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AFL94_RS12165 PF00155 Aminotransferase class I and II AFL94_RS12170 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS12170 PF00072 Response regulator receiver domain AFL94_RS12195 PF00365 Phosphofructokinase AFL94_RS12200 PF01571 Aminomethyltransferase folate-binding domain AFL94_RS12205 PF08768 Domain of unknown function (DUF1794) AFL94_RS12215 PF00486 Transcriptional regulatory protein, C terminal AFL94_RS12220 PF00583 Acetyltransferase (GNAT) family AFL94_RS12225 PF13090 Polyphosphate kinase C-terminal domain 2 AFL94_RS12225 PF02503 Polyphosphate kinase middle domain AFL94_RS12225 PF17941 Polyphosphate kinase C-terminal domain 1 AFL94_RS12225 PF13089 Polyphosphate kinase N-terminal domain AFL94_RS12230 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_RS12230 PF00293 NUDIX domain AFL94_RS12240 PF00303 Thymidylate synthase AFL94_RS12245 PF00186 Dihydrofolate reductase AFL94_RS12255 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFL94_RS12255 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFL94_RS12260 PF01565 FAD binding domain AFL94_RS12260 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFL94_RS12265 PF07690 Major Facilitator Superfamily AFL94_RS12275 PF13452 N-terminal half of MaoC dehydratase AFL94_RS12300 PF04607 Region found in RelA / SpoT proteins AFL94_RS12320 PF00271 Helicase conserved C-terminal domain AFL94_RS12320 PF00270 DEAD/DEAH box helicase AFL94_RS12320 PF03880 DbpA RNA binding domain AFL94_RS12330 PF01053 Cys/Met metabolism PLP-dependent enzyme AFL94_RS12335 PF00571 CBS domain AFL94_RS12335 PF00291 Pyridoxal-phosphate dependent enzyme AFL94_RS12345 PF00085 Thioredoxin AFL94_RS12355 PF04461 Protein of unknown function (DUF520) AFL94_RS12360 PF01435 Peptidase family M48 AFL94_RS12365 PF00892 EamA-like transporter family AFL94_RS12370 PF00202 Aminotransferase class-III AFL94_RS12375 PF00209 Sodium:neurotransmitter symporter family AFL94_RS12380 PF13556 PucR C-terminal helix-turn-helix domain AFL94_RS12380 PF07905 Purine catabolism regulatory protein-like family AFL94_RS12395 PF00348 Polyprenyl synthetase AFL94_RS12400 PF00425 chorismate binding enzyme AFL94_RS12410 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS12415 PF00005 ABC transporter AFL94_RS12420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS12430 PF18374 Enolase N-terminal domain-like AFL94_RS12430 PF13378 Enolase C-terminal domain-like AFL94_RS12445 PF02817 e3 binding domain AFL94_RS12445 PF00364 Biotin-requiring enzyme AFL94_RS12445 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_RS12450 PF02780 Transketolase, C-terminal domain AFL94_RS12450 PF02779 Transketolase, pyrimidine binding domain AFL94_RS12455 PF00676 Dehydrogenase E1 component AFL94_RS12460 PF01037 Lrp/AsnC ligand binding domain AFL94_RS12465 PF00378 Enoyl-CoA hydratase/isomerase AFL94_RS12470 PF00970 Oxidoreductase FAD-binding domain AFL94_RS12470 PF00175 Oxidoreductase NAD-binding domain AFL94_RS12470 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_RS12475 PF01883 Iron-sulfur cluster assembly protein AFL94_RS12480 PF05138 Phenylacetic acid catabolic protein AFL94_RS12485 PF06243 Phenylacetic acid degradation B AFL94_RS12490 PF05138 Phenylacetic acid catabolic protein AFL94_RS12495 PF07681 DoxX AFL94_RS12500 PF00005 ABC transporter AFL94_RS12505 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS12510 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AFL94_RS12510 PF00326 Prolyl oligopeptidase family AFL94_RS12515 PF04229 GrpB protein AFL94_RS12520 PF03061 Thioesterase superfamily AFL94_RS12525 PF00501 AMP-binding enzyme AFL94_RS12525 PF14535 AMP-binding enzyme C-terminal domain AFL94_RS12540 PF00171 Aldehyde dehydrogenase family AFL94_RS12540 PF01575 MaoC like domain AFL94_RS12545 PF03061 Thioesterase superfamily AFL94_RS12565 PF13350 Tyrosine phosphatase family AFL94_RS12575 PF01184 GPR1/FUN34/yaaH family AFL94_RS12585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_RS12585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_RS12590 PF00378 Enoyl-CoA hydratase/isomerase AFL94_RS12595 PF02803 Thiolase, C-terminal domain AFL94_RS12595 PF00108 Thiolase, N-terminal domain AFL94_RS12600 PF08946 Osmosensory transporter coiled coil AFL94_RS12600 PF00083 Sugar (and other) transporter AFL94_RS12605 PF00378 Enoyl-CoA hydratase/isomerase AFL94_RS12610 PF00501 AMP-binding enzyme AFL94_RS12610 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS12615 PF01040 UbiA prenyltransferase family AFL94_RS12630 PF01578 Cytochrome C assembly protein AFL94_RS12640 PF02683 Cytochrome C biogenesis protein transmembrane region AFL94_RS12645 PF00085 Thioredoxin AFL94_RS12650 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_RS12660 PF06971 Putative DNA-binding protein N-terminus AFL94_RS12660 PF02629 CoA binding domain AFL94_RS12675 PF12728 Helix-turn-helix domain AFL94_RS12680 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFL94_RS12680 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFL94_RS12685 PF01022 Bacterial regulatory protein, arsR family AFL94_RS12690 PF00850 Histone deacetylase domain AFL94_RS12695 PF02386 Cation transport protein AFL94_RS12700 PF02254 TrkA-N domain AFL94_RS12700 PF02080 TrkA-C domain AFL94_RS12705 PF01494 FAD binding domain AFL94_RS12710 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFL94_RS12710 PF03807 NADP oxidoreductase coenzyme F420-dependent AFL94_RS12715 PF01261 Xylose isomerase-like TIM barrel AFL94_RS12720 PF02541 Ppx/GppA phosphatase family AFL94_RS12725 PF01751 Toprim domain AFL94_RS12725 PF13368 Topoisomerase C-terminal repeat AFL94_RS12725 PF01131 DNA topoisomerase AFL94_RS12745 PF17773 UPF0176 acylphosphatase like domain AFL94_RS12745 PF12368 Rhodanase C-terminal AFL94_RS12755 PF00270 DEAD/DEAH box helicase AFL94_RS12755 PF00271 Helicase conserved C-terminal domain AFL94_RS12755 PF09369 Domain of unknown function (DUF1998) AFL94_RS12785 PF00437 Type II/IV secretion system protein AFL94_RS12800 PF00293 NUDIX domain AFL94_RS12805 PF10576 Iron-sulfur binding domain of endonuclease III AFL94_RS12805 PF00730 HhH-GPD superfamily base excision DNA repair protein AFL94_RS12805 PF00633 Helix-hairpin-helix motif AFL94_RS12810 PF00501 AMP-binding enzyme AFL94_RS12810 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS12810 PF16177 Acetyl-coenzyme A synthetase N-terminus AFL94_RS12820 PF01220 Dehydroquinase class II AFL94_RS12825 PF13180 PDZ domain AFL94_RS12830 PF13545 Crp-like helix-turn-helix domain AFL94_RS12830 PF00027 Cyclic nucleotide-binding domain AFL94_RS12840 PF01042 Endoribonuclease L-PSP AFL94_RS12845 PF00905 Penicillin binding protein transpeptidase domain AFL94_RS12845 PF00912 Transglycosylase AFL94_RS12855 PF00664 ABC transporter transmembrane region AFL94_RS12855 PF00005 ABC transporter AFL94_RS12860 PF00664 ABC transporter transmembrane region AFL94_RS12860 PF00005 ABC transporter AFL94_RS12865 PF01259 SAICAR synthetase AFL94_RS12870 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFL94_RS12870 PF02843 Phosphoribosylglycinamide synthetase, C domain AFL94_RS12870 PF02844 Phosphoribosylglycinamide synthetase, N domain AFL94_RS12890 PF00156 Phosphoribosyl transferase domain AFL94_RS12895 PF00586 AIR synthase related protein, N-terminal domain AFL94_RS12895 PF02769 AIR synthase related protein, C-terminal domain AFL94_RS12905 PF01548 Transposase AFL94_RS12905 PF02371 Transposase IS116/IS110/IS902 family AFL94_RS12910 PF02371 Transposase IS116/IS110/IS902 family AFL94_RS12910 PF01548 Transposase AFL94_RS12915 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS12915 PF00072 Response regulator receiver domain AFL94_RS12920 PF02146 Sir2 family AFL94_RS12930 PF02861 Clp amino terminal domain, pathogenicity island component AFL94_RS12930 PF17871 AAA lid domain AFL94_RS12930 PF07724 AAA domain (Cdc48 subfamily) AFL94_RS12930 PF10431 C-terminal, D2-small domain, of ClpB protein AFL94_RS12930 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_RS12940 PF03741 Integral membrane protein TerC family AFL94_RS12945 PF03733 Inner membrane component domain AFL94_RS12950 PF02390 Putative methyltransferase AFL94_RS12960 PF13411 MerR HTH family regulatory protein AFL94_RS12965 PF01556 DnaJ C terminal domain AFL94_RS12965 PF00226 DnaJ domain AFL94_RS12965 PF00684 DnaJ central domain AFL94_RS12970 PF01025 GrpE AFL94_RS12975 PF00012 Hsp70 protein AFL94_RS12990 PF00270 DEAD/DEAH box helicase AFL94_RS12990 PF00271 Helicase conserved C-terminal domain AFL94_RS12990 PF12300 ATP-dependent RNA helicase RhlB AFL94_RS12995 PF03176 MMPL family AFL94_RS13000 PF01047 MarR family AFL94_RS13005 PF01810 LysE type translocator AFL94_RS13010 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_RS13015 PF04715 Anthranilate synthase component I, N terminal region AFL94_RS13015 PF00425 chorismate binding enzyme AFL94_RS13015 PF00117 Glutamine amidotransferase class-I AFL94_RS13020 PF00561 alpha/beta hydrolase fold AFL94_RS13025 PF13396 Phospholipase_D-nuclease N-terminal AFL94_RS13025 PF13091 PLD-like domain AFL94_RS13035 PF00005 ABC transporter AFL94_RS13040 PF09819 ABC-type cobalt transport system, permease component AFL94_RS13050 PF03334 Na+/H+ antiporter subunit AFL94_RS13060 PF01899 Na+/H+ ion antiporter subunit AFL94_RS13065 PF00361 Proton-conducting membrane transporter AFL94_RS13070 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFL94_RS13075 PF00361 Proton-conducting membrane transporter AFL94_RS13075 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AFL94_RS13075 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFL94_RS13075 PF13244 Domain of unknown function (DUF4040) AFL94_RS13085 PF00692 dUTPase AFL94_RS13100 PF05681 Fumarate hydratase (Fumerase) AFL94_RS13100 PF05683 Fumarase C-terminus AFL94_RS13120 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFL94_RS13125 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS13130 PF00005 ABC transporter AFL94_RS13135 PF05872 Bacterial protein of unknown function (DUF853) AFL94_RS13145 PF07690 Major Facilitator Superfamily AFL94_RS13150 PF17991 Thioredoxin like C-terminal domain AFL94_RS13150 PF02683 Cytochrome C biogenesis protein transmembrane region AFL94_RS13150 PF00578 AhpC/TSA family AFL94_RS13160 PF05425 Copper resistance protein D AFL94_RS13160 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AFL94_RS13170 PF04314 Copper chaperone PCu(A)C AFL94_RS13185 PF00216 Bacterial DNA-binding protein AFL94_RS13190 PF00216 Bacterial DNA-binding protein AFL94_RS13205 PF00253 Ribosomal protein S14p/S29e AFL94_RS13210 PF00471 Ribosomal protein L33 AFL94_RS13215 PF00830 Ribosomal L28 family AFL94_RS13225 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS13230 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS13235 PF00005 ABC transporter AFL94_RS13235 PF08402 TOBE domain AFL94_RS13250 PF01037 Lrp/AsnC ligand binding domain AFL94_RS13255 PF00202 Aminotransferase class-III AFL94_RS13265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS13265 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS13265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS13275 PF17754 MftR C-terminal domain AFL94_RS13275 PF00440 Bacterial regulatory proteins, tetR family AFL94_RS13290 PF00171 Aldehyde dehydrogenase family AFL94_RS13295 PF00202 Aminotransferase class-III AFL94_RS13305 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_RS13320 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFL94_RS13355 PF00171 Aldehyde dehydrogenase family AFL94_RS13370 PF13977 BetI-type transcriptional repressor, C-terminal AFL94_RS13370 PF00440 Bacterial regulatory proteins, tetR family AFL94_RS13375 PF01179 Copper amine oxidase, enzyme domain AFL94_RS13375 PF02728 Copper amine oxidase, N3 domain AFL94_RS13385 PF01266 FAD dependent oxidoreductase AFL94_RS13390 PF00171 Aldehyde dehydrogenase family AFL94_RS13420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_RS13425 PF00571 CBS domain AFL94_RS13425 PF03448 MgtE intracellular N domain AFL94_RS13425 PF01769 Divalent cation transporter AFL94_RS13430 PF03313 Serine dehydratase alpha chain AFL94_RS13430 PF03315 Serine dehydratase beta chain AFL94_RS13435 PF00464 Serine hydroxymethyltransferase AFL94_RS13440 PF01597 Glycine cleavage H-protein AFL94_RS13445 PF01571 Aminomethyltransferase folate-binding domain AFL94_RS13445 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFL94_RS13450 PF02347 Glycine cleavage system P-protein AFL94_RS13465 PF13520 Amino acid permease AFL94_RS13470 PF00075 RNase H AFL94_RS13480 PF13409 Glutathione S-transferase, N-terminal domain AFL94_RS13495 PF00005 ABC transporter AFL94_RS13495 PF00664 ABC transporter transmembrane region AFL94_RS13505 PF00005 ABC transporter AFL94_RS13510 PF01032 FecCD transport family AFL94_RS13515 PF01032 FecCD transport family AFL94_RS13520 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFL94_RS13520 PF00753 Metallo-beta-lactamase superfamily AFL94_RS13535 PF00005 ABC transporter AFL94_RS13560 PF02567 Phenazine biosynthesis-like protein AFL94_RS13565 PF07690 Major Facilitator Superfamily AFL94_RS13580 PF00440 Bacterial regulatory proteins, tetR family AFL94_RS13580 PF17754 MftR C-terminal domain AFL94_RS13585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS13585 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS13585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS13590 PF08482 ATP-dependent helicase C-terminal AFL94_RS13590 PF00271 Helicase conserved C-terminal domain AFL94_RS13590 PF04408 Helicase associated domain (HA2) AFL94_RS13590 PF00270 DEAD/DEAH box helicase AFL94_RS13595 PF00561 alpha/beta hydrolase fold AFL94_RS13600 PF00248 Aldo/keto reductase family AFL94_RS13605 PF00171 Aldehyde dehydrogenase family AFL94_RS13625 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS13635 PF00210 Ferritin-like domain AFL94_RS13640 PF09371 Tex-like protein N-terminal domain AFL94_RS13640 PF16921 Tex protein YqgF-like domain AFL94_RS13640 PF17674 HHH domain AFL94_RS13640 PF00575 S1 RNA binding domain AFL94_RS13655 PF07676 WD40-like Beta Propeller Repeat AFL94_RS13655 PF00326 Prolyl oligopeptidase family AFL94_RS13665 PF03458 UPF0126 domain AFL94_RS13680 PF07690 Major Facilitator Superfamily AFL94_RS13685 PF00313 'Cold-shock' DNA-binding domain AFL94_RS13690 PF00296 Luciferase-like monooxygenase AFL94_RS13715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS13715 PF03466 LysR substrate binding domain AFL94_RS13720 PF00378 Enoyl-CoA hydratase/isomerase AFL94_RS13720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_RS13720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_RS13725 PF01645 Conserved region in glutamate synthase AFL94_RS13730 PF00005 ABC transporter AFL94_RS13730 PF00664 ABC transporter transmembrane region AFL94_RS13735 PF00664 ABC transporter transmembrane region AFL94_RS13735 PF00005 ABC transporter AFL94_RS13745 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFL94_RS13755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS13755 PF07730 Histidine kinase AFL94_RS13760 PF00072 Response regulator receiver domain AFL94_RS13760 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS13765 PF13732 Domain of unknown function (DUF4162) AFL94_RS13765 PF00005 ABC transporter AFL94_RS13785 PF00753 Metallo-beta-lactamase superfamily AFL94_RS13795 PF13411 MerR HTH family regulatory protein AFL94_RS13800 PF00011 Hsp20/alpha crystallin family AFL94_RS13810 PF00171 Aldehyde dehydrogenase family AFL94_RS13815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS13815 PF03466 LysR substrate binding domain AFL94_RS13820 PF00474 Sodium:solute symporter family AFL94_RS13825 PF01370 NAD dependent epimerase/dehydratase family AFL94_RS13825 PF08338 Domain of unknown function (DUF1731) AFL94_RS13850 PF07687 Peptidase dimerisation domain AFL94_RS13850 PF01546 Peptidase family M20/M25/M40 AFL94_RS13860 PF00480 ROK family AFL94_RS13870 PF13350 Tyrosine phosphatase family AFL94_RS13875 PF13823 Alcohol dehydrogenase GroES-associated AFL94_RS13875 PF00107 Zinc-binding dehydrogenase AFL94_RS13875 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_RS13885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFL94_RS13885 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS13895 PF03576 Peptidase family S58 AFL94_RS13900 PF14759 Reductase C-terminal AFL94_RS13900 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS13905 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AFL94_RS13905 PF13088 BNR repeat-like domain AFL94_RS13905 PF00754 F5/8 type C domain AFL94_RS13910 PF05922 Peptidase inhibitor I9 AFL94_RS13910 PF00082 Subtilase family AFL94_RS13920 PF00107 Zinc-binding dehydrogenase AFL94_RS13920 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_RS13945 PF07690 Major Facilitator Superfamily AFL94_RS13955 PF13532 2OG-Fe(II) oxygenase superfamily AFL94_RS13960 PF00294 pfkB family carbohydrate kinase AFL94_RS13975 PF00210 Ferritin-like domain AFL94_RS13990 PF00221 Aromatic amino acid lyase AFL94_RS13995 PF02261 Aspartate decarboxylase AFL94_RS14015 PF05025 RbsD / FucU transport protein family AFL94_RS14020 PF00294 pfkB family carbohydrate kinase AFL94_RS14025 PF13407 Periplasmic binding protein domain AFL94_RS14030 PF02653 Branched-chain amino acid transport system / permease component AFL94_RS14035 PF00005 ABC transporter AFL94_RS14040 PF00356 Bacterial regulatory proteins, lacI family AFL94_RS14045 PF18357 Diphteria toxin repressor SH3 domain AFL94_RS14045 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFL94_RS14045 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFL94_RS14050 PF13419 Haloacid dehalogenase-like hydrolase AFL94_RS14055 PF07702 UTRA domain AFL94_RS14055 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS14070 PF00005 ABC transporter AFL94_RS14075 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS14080 PF00950 ABC 3 transport family AFL94_RS14085 PF00005 ABC transporter AFL94_RS14090 PF01297 Zinc-uptake complex component A periplasmic AFL94_RS14115 PF13411 MerR HTH family regulatory protein AFL94_RS14115 PF07739 TipAS antibiotic-recognition domain AFL94_RS14135 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_RS14150 PF01593 Flavin containing amine oxidoreductase AFL94_RS14175 PF02080 TrkA-C domain AFL94_RS14175 PF02254 TrkA-N domain AFL94_RS14180 PF02386 Cation transport protein AFL94_RS14190 PF01037 Lrp/AsnC ligand binding domain AFL94_RS14205 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS14205 PF14759 Reductase C-terminal AFL94_RS14210 PF00355 Rieske [2Fe-2S] domain AFL94_RS14225 PF00176 SNF2 family N-terminal domain AFL94_RS14225 PF04434 SWIM zinc finger AFL94_RS14225 PF00271 Helicase conserved C-terminal domain AFL94_RS14235 PF00067 Cytochrome P450 AFL94_RS14245 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS14245 PF07702 UTRA domain AFL94_RS14250 PF02652 L-lactate permease AFL94_RS14255 PF02754 Cysteine-rich domain AFL94_RS14260 PF02589 LUD domain AFL94_RS14260 PF13183 4Fe-4S dicluster domain AFL94_RS14260 PF11870 Domain of unknown function (DUF3390) AFL94_RS14265 PF02589 LUD domain AFL94_RS14280 PF04264 YceI-like domain AFL94_RS14290 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS14295 PF00005 ABC transporter AFL94_RS14295 PF00571 CBS domain AFL94_RS14300 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS14305 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_RS14310 PF01235 Sodium:alanine symporter family AFL94_RS14315 PF03328 HpcH/HpaI aldolase/citrate lyase family AFL94_RS14320 PF00324 Amino acid permease AFL94_RS14325 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_RS14335 PF03949 Malic enzyme, NAD binding domain AFL94_RS14335 PF00390 Malic enzyme, N-terminal domain AFL94_RS14345 PF00155 Aminotransferase class I and II AFL94_RS14355 PF03061 Thioesterase superfamily AFL94_RS14360 PF09339 IclR helix-turn-helix domain AFL94_RS14360 PF01614 Bacterial transcriptional regulator AFL94_RS14365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_RS14365 PF01261 Xylose isomerase-like TIM barrel AFL94_RS14370 PF08501 Shikimate dehydrogenase substrate binding domain AFL94_RS14370 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFL94_RS14375 PF07690 Major Facilitator Superfamily AFL94_RS14375 PF00083 Sugar (and other) transporter AFL94_RS14385 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFL94_RS14385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_RS14390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS14390 PF03466 LysR substrate binding domain AFL94_RS14395 PF00083 Sugar (and other) transporter AFL94_RS14400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS14400 PF03466 LysR substrate binding domain AFL94_RS14405 PF03601 Conserved hypothetical protein 698 AFL94_RS14420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS14420 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS14420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS14425 PF02656 Domain of unknown function (DUF202) AFL94_RS14430 PF02656 Domain of unknown function (DUF202) AFL94_RS14435 PF03466 LysR substrate binding domain AFL94_RS14435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS14440 PF07690 Major Facilitator Superfamily AFL94_RS14440 PF00083 Sugar (and other) transporter AFL94_RS14445 PF12706 Beta-lactamase superfamily domain AFL94_RS14450 PF01638 HxlR-like helix-turn-helix AFL94_RS14460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_RS14465 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS14470 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS14470 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_RS14475 PF00005 ABC transporter AFL94_RS14475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_RS14490 PF00501 AMP-binding enzyme AFL94_RS14490 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS14505 PF07690 Major Facilitator Superfamily AFL94_RS14555 PF14031 Putative serine dehydratase domain AFL94_RS14560 PF09339 IclR helix-turn-helix domain AFL94_RS14560 PF01614 Bacterial transcriptional regulator AFL94_RS14570 PF01144 Coenzyme A transferase AFL94_RS14575 PF01144 Coenzyme A transferase AFL94_RS14580 PF02803 Thiolase, C-terminal domain AFL94_RS14580 PF00108 Thiolase, N-terminal domain AFL94_RS14585 PF00300 Histidine phosphatase superfamily (branch 1) AFL94_RS14590 PF00149 Calcineurin-like phosphoesterase AFL94_RS14595 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFL94_RS14595 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFL94_RS14600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS14600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_RS14600 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_RS14615 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS14615 PF07729 FCD domain AFL94_RS14625 PF10415 Fumarase C C-terminus AFL94_RS14625 PF00206 Lyase AFL94_RS14630 PF00324 Amino acid permease AFL94_RS14635 PF00326 Prolyl oligopeptidase family AFL94_RS14635 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AFL94_RS14635 PF07676 WD40-like Beta Propeller Repeat AFL94_RS14660 PF02817 e3 binding domain AFL94_RS14660 PF00364 Biotin-requiring enzyme AFL94_RS14660 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFL94_RS14665 PF02780 Transketolase, C-terminal domain AFL94_RS14665 PF02779 Transketolase, pyrimidine binding domain AFL94_RS14670 PF00676 Dehydrogenase E1 component AFL94_RS14675 PF00155 Aminotransferase class I and II AFL94_RS14680 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AFL94_RS14695 PF00206 Lyase AFL94_RS14695 PF08328 Adenylosuccinate lyase C-terminal AFL94_RS14700 PF07690 Major Facilitator Superfamily AFL94_RS14705 PF00384 Molybdopterin oxidoreductase AFL94_RS14705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFL94_RS14705 PF01568 Molydopterin dinucleotide binding domain AFL94_RS14710 PF04324 BFD-like [2Fe-2S] binding domain AFL94_RS14710 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFL94_RS14710 PF18267 Rubredoxin NAD+ reductase C-terminal domain AFL94_RS14710 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFL94_RS14710 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS14720 PF13806 Rieske-like [2Fe-2S] domain AFL94_RS14720 PF04324 BFD-like [2Fe-2S] binding domain AFL94_RS14720 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFL94_RS14720 PF18267 Rubredoxin NAD+ reductase C-terminal domain AFL94_RS14720 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFL94_RS14720 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS14725 PF10414 Sirohaem synthase dimerisation region AFL94_RS14725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFL94_RS14725 PF14824 Sirohaem biosynthesis protein central AFL94_RS14735 PF00248 Aldo/keto reductase family AFL94_RS14740 PF07729 FCD domain AFL94_RS14740 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS14745 PF01565 FAD binding domain AFL94_RS14745 PF02913 FAD linked oxidases, C-terminal domain AFL94_RS14755 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFL94_RS14755 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFL94_RS14760 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_RS14760 PF01799 [2Fe-2S] binding domain AFL94_RS14765 PF00860 Permease family AFL94_RS14770 PF01568 Molydopterin dinucleotide binding domain AFL94_RS14770 PF00384 Molybdopterin oxidoreductase AFL94_RS14775 PF02634 FdhD/NarQ family AFL94_RS14790 PF00501 AMP-binding enzyme AFL94_RS14790 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS14805 PF00072 Response regulator receiver domain AFL94_RS14805 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS14810 PF07730 Histidine kinase AFL94_RS14820 PF00005 ABC transporter AFL94_RS14825 PF09335 SNARE associated Golgi protein AFL94_RS14840 PF05195 Aminopeptidase P, N-terminal domain AFL94_RS14840 PF00557 Metallopeptidase family M24 AFL94_RS14850 PF00561 alpha/beta hydrolase fold AFL94_RS14865 PF00155 Aminotransferase class I and II AFL94_RS14870 PF02627 Carboxymuconolactone decarboxylase family AFL94_RS14885 PF04055 Radical SAM superfamily AFL94_RS14890 PF01494 FAD binding domain AFL94_RS14895 PF13649 Methyltransferase domain AFL94_RS14900 PF02797 Chalcone and stilbene synthases, C-terminal domain AFL94_RS14900 PF00195 Chalcone and stilbene synthases, N-terminal domain AFL94_RS14925 PF01266 FAD dependent oxidoreductase AFL94_RS14935 PF04371 Porphyromonas-type peptidyl-arginine deiminase AFL94_RS14940 PF00795 Carbon-nitrogen hydrolase AFL94_RS14980 PF04960 Glutaminase AFL94_RS14985 PF03061 Thioesterase superfamily AFL94_RS15010 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AFL94_RS15010 PF07730 Histidine kinase AFL94_RS15010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS15010 PF00672 HAMP domain AFL94_RS15030 PF04012 PspA/IM30 family AFL94_RS15035 PF05544 Proline racemase AFL94_RS15050 PF01494 FAD binding domain AFL94_RS15050 PF07976 Phenol hydroxylase, C-terminal dimerisation domain AFL94_RS15075 PF07690 Major Facilitator Superfamily AFL94_RS15100 PF02583 Metal-sensitive transcriptional repressor AFL94_RS15110 PF00403 Heavy-metal-associated domain AFL94_RS15125 PF00324 Amino acid permease AFL94_RS15130 PF05199 GMC oxidoreductase AFL94_RS15130 PF00732 GMC oxidoreductase AFL94_RS15135 PF01872 RibD C-terminal domain AFL94_RS15140 PF13520 Amino acid permease AFL94_RS15145 PF01329 Pterin 4 alpha carbinolamine dehydratase AFL94_RS15165 PF03737 Aldolase/RraA AFL94_RS15170 PF13520 Amino acid permease AFL94_RS15185 PF01070 FMN-dependent dehydrogenase AFL94_RS15190 PF07690 Major Facilitator Superfamily AFL94_RS15190 PF00083 Sugar (and other) transporter AFL94_RS15195 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS15195 PF07729 FCD domain AFL94_RS15200 PF01554 MatE AFL94_RS15210 PF07690 Major Facilitator Superfamily AFL94_RS15215 PF02517 CPBP intramembrane metalloprotease AFL94_RS15220 PF07690 Major Facilitator Superfamily AFL94_RS15225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_RS15230 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS15235 PF12911 N-terminal TM domain of oligopeptide transport permease C AFL94_RS15235 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS15240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_RS15240 PF00005 ABC transporter AFL94_RS15245 PF00230 Major intrinsic protein AFL94_RS15260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS15260 PF03466 LysR substrate binding domain AFL94_RS15270 PF01012 Electron transfer flavoprotein domain AFL94_RS15270 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_RS15275 PF01012 Electron transfer flavoprotein domain AFL94_RS15300 PF13452 N-terminal half of MaoC dehydratase AFL94_RS15305 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS15305 PF00501 AMP-binding enzyme AFL94_RS15310 PF07690 Major Facilitator Superfamily AFL94_RS15315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS15315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS15320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS15320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS15320 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS15330 PF01575 MaoC like domain AFL94_RS15355 PF00011 Hsp20/alpha crystallin family AFL94_RS15360 PF07690 Major Facilitator Superfamily AFL94_RS15365 PF00171 Aldehyde dehydrogenase family AFL94_RS15385 PF17925 Tetracyclin repressor-like, C-terminal domain AFL94_RS15385 PF00440 Bacterial regulatory proteins, tetR family AFL94_RS15390 PF13380 CoA binding domain AFL94_RS15390 PF13607 Succinyl-CoA ligase like flavodoxin domain AFL94_RS15395 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS15395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS15395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS15400 PF00005 ABC transporter AFL94_RS15400 PF00664 ABC transporter transmembrane region AFL94_RS15405 PF00664 ABC transporter transmembrane region AFL94_RS15405 PF00005 ABC transporter AFL94_RS15420 PF03965 Penicillinase repressor AFL94_RS15425 PF01435 Peptidase family M48 AFL94_RS15435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS15435 PF03466 LysR substrate binding domain AFL94_RS15440 PF08946 Osmosensory transporter coiled coil AFL94_RS15440 PF00083 Sugar (and other) transporter AFL94_RS15445 PF01546 Peptidase family M20/M25/M40 AFL94_RS15450 PF01425 Amidase AFL94_RS15460 PF00004 ATPase family associated with various cellular activities (AAA) AFL94_RS15460 PF17862 AAA+ lid domain AFL94_RS15460 PF06480 FtsH Extracellular AFL94_RS15460 PF01434 Peptidase family M41 AFL94_RS15470 PF01329 Pterin 4 alpha carbinolamine dehydratase AFL94_RS15480 PF04239 Protein of unknown function (DUF421) AFL94_RS15485 PF13520 Amino acid permease AFL94_RS15495 PF00857 Isochorismatase family AFL94_RS15505 PF00571 CBS domain AFL94_RS15525 PF08240 Alcohol dehydrogenase GroES-like domain AFL94_RS15525 PF13823 Alcohol dehydrogenase GroES-associated AFL94_RS15525 PF00107 Zinc-binding dehydrogenase AFL94_RS15530 PF02735 Ku70/Ku80 beta-barrel domain AFL94_RS15535 PF04679 ATP dependent DNA ligase C terminal region AFL94_RS15535 PF01068 ATP dependent DNA ligase domain AFL94_RS15535 PF13298 DNA polymerase Ligase (LigD) AFL94_RS15545 PF00171 Aldehyde dehydrogenase family AFL94_RS15555 PF02585 GlcNAc-PI de-N-acetylase AFL94_RS15565 PF00578 AhpC/TSA family AFL94_RS15570 PF03441 FAD binding domain of DNA photolyase AFL94_RS15570 PF00875 DNA photolyase AFL94_RS15595 PF00171 Aldehyde dehydrogenase family AFL94_RS15600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_RS15600 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_RS15600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS15605 PF07969 Amidohydrolase family AFL94_RS15610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFL94_RS15610 PF03466 LysR substrate binding domain AFL94_RS15615 PF00083 Sugar (and other) transporter AFL94_RS15615 PF07690 Major Facilitator Superfamily AFL94_RS15625 PF17853 GGDEF-like domain AFL94_RS15625 PF13556 PucR C-terminal helix-turn-helix domain AFL94_RS15625 PF07905 Purine catabolism regulatory protein-like family AFL94_RS15630 PF01968 Hydantoinase/oxoprolinase AFL94_RS15630 PF05378 Hydantoinase/oxoprolinase N-terminal region AFL94_RS15635 PF02538 Hydantoinase B/oxoprolinase AFL94_RS15645 PF03852 DNA mismatch endonuclease Vsr AFL94_RS15665 PF00145 C-5 cytosine-specific DNA methylase AFL94_RS15715 PF12558 ATP-binding cassette cobalt transporter AFL94_RS15715 PF00005 ABC transporter AFL94_RS15730 PF01156 Inosine-uridine preferring nucleoside hydrolase AFL94_RS15745 PF01268 Formate--tetrahydrofolate ligase AFL94_RS15765 PF01614 Bacterial transcriptional regulator AFL94_RS15765 PF09339 IclR helix-turn-helix domain AFL94_RS15770 PF00067 Cytochrome P450 AFL94_RS15775 PF00391 PEP-utilising enzyme, mobile domain AFL94_RS15775 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFL94_RS15775 PF02896 PEP-utilising enzyme, TIM barrel domain AFL94_RS15780 PF00391 PEP-utilising enzyme, mobile domain AFL94_RS15780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFL94_RS15790 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_RS15795 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS15795 PF14759 Reductase C-terminal AFL94_RS15805 PF00171 Aldehyde dehydrogenase family AFL94_RS15810 PF04960 Glutaminase AFL94_RS15830 PF00571 CBS domain AFL94_RS15830 PF01595 Cyclin M transmembrane N-terminal domain AFL94_RS15835 PF00571 CBS domain AFL94_RS15835 PF03471 Transporter associated domain AFL94_RS15835 PF01595 Cyclin M transmembrane N-terminal domain AFL94_RS15840 PF01593 Flavin containing amine oxidoreductase AFL94_RS15845 PF03992 Antibiotic biosynthesis monooxygenase AFL94_RS15850 PF01757 Acyltransferase family AFL94_RS15860 PF00486 Transcriptional regulatory protein, C terminal AFL94_RS15860 PF00072 Response regulator receiver domain AFL94_RS15865 PF00672 HAMP domain AFL94_RS15865 PF00512 His Kinase A (phospho-acceptor) domain AFL94_RS15865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS15880 PF03601 Conserved hypothetical protein 698 AFL94_RS15900 PF03631 Virulence factor BrkB AFL94_RS15910 PF01979 Amidohydrolase family AFL94_RS15915 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_RS15915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_RS15915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS15920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFL94_RS15920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFL94_RS15925 PF01261 Xylose isomerase-like TIM barrel AFL94_RS15930 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFL94_RS15935 PF01177 Asp/Glu/Hydantoin racemase AFL94_RS15955 PF13302 Acetyltransferase (GNAT) domain AFL94_RS15960 PF01497 Periplasmic binding protein AFL94_RS15965 PF01032 FecCD transport family AFL94_RS15970 PF01032 FecCD transport family AFL94_RS15975 PF00005 ABC transporter AFL94_RS15995 PF00950 ABC 3 transport family AFL94_RS16000 PF00005 ABC transporter AFL94_RS16010 PF07690 Major Facilitator Superfamily AFL94_RS16020 PF01039 Carboxyl transferase domain AFL94_RS16025 PF00289 Biotin carboxylase, N-terminal domain AFL94_RS16025 PF02785 Biotin carboxylase C-terminal domain AFL94_RS16025 PF00364 Biotin-requiring enzyme AFL94_RS16025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFL94_RS16035 PF03328 HpcH/HpaI aldolase/citrate lyase family AFL94_RS16065 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS16065 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS16065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS16070 PF00561 alpha/beta hydrolase fold AFL94_RS16075 PF02595 Glycerate kinase family AFL94_RS16090 PF00916 Sulfate permease family AFL94_RS16090 PF01740 STAS domain AFL94_RS16095 PF00990 Diguanylate cyclase, GGDEF domain AFL94_RS16100 PF00989 PAS fold AFL94_RS16100 PF01590 GAF domain AFL94_RS16100 PF00563 EAL domain AFL94_RS16100 PF00990 Diguanylate cyclase, GGDEF domain AFL94_RS16110 PF00535 Glycosyl transferase family 2 AFL94_RS16115 PF00501 AMP-binding enzyme AFL94_RS16115 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS16140 PF00551 Formyl transferase AFL94_RS16145 PF04268 Sarcosine oxidase, gamma subunit family AFL94_RS16150 PF01571 Aminomethyltransferase folate-binding domain AFL94_RS16150 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFL94_RS16150 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS16150 PF17806 Sarcosine oxidase A3 domain AFL94_RS16155 PF04267 Sarcosine oxidase, delta subunit family AFL94_RS16160 PF01266 FAD dependent oxidoreductase AFL94_RS16170 PF07729 FCD domain AFL94_RS16170 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS16180 PF02633 Creatinine amidohydrolase AFL94_RS16185 PF02028 BCCT, betaine/carnitine/choline family transporter AFL94_RS16190 PF00557 Metallopeptidase family M24 AFL94_RS16190 PF01321 Creatinase/Prolidase N-terminal domain AFL94_RS16195 PF08946 Osmosensory transporter coiled coil AFL94_RS16195 PF00083 Sugar (and other) transporter AFL94_RS16200 PF00083 Sugar (and other) transporter AFL94_RS16200 PF08946 Osmosensory transporter coiled coil AFL94_RS16205 PF01614 Bacterial transcriptional regulator AFL94_RS16205 PF09339 IclR helix-turn-helix domain AFL94_RS16210 PF13088 BNR repeat-like domain AFL94_RS16210 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AFL94_RS16210 PF00754 F5/8 type C domain AFL94_RS16215 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AFL94_RS16220 PF00480 ROK family AFL94_RS16225 PF00701 Dihydrodipicolinate synthetase family AFL94_RS16230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_RS16230 PF00005 ABC transporter AFL94_RS16235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFL94_RS16235 PF00005 ABC transporter AFL94_RS16240 PF00528 Binding-protein-dependent transport system inner membrane component AFL94_RS16245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFL94_RS16250 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS16250 PF07729 FCD domain AFL94_RS16255 PF01012 Electron transfer flavoprotein domain AFL94_RS16260 PF01012 Electron transfer flavoprotein domain AFL94_RS16260 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_RS16275 PF07929 Plasmid pRiA4b ORF-3-like protein AFL94_RS16280 PF01614 Bacterial transcriptional regulator AFL94_RS16280 PF09339 IclR helix-turn-helix domain AFL94_RS16285 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_RS16290 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFL94_RS16290 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AFL94_RS16295 PF00682 HMGL-like AFL94_RS16295 PF07836 DmpG-like communication domain AFL94_RS16300 PF01613 Flavin reductase like domain AFL94_RS16325 PF00766 Electron transfer flavoprotein FAD-binding domain AFL94_RS16325 PF01012 Electron transfer flavoprotein domain AFL94_RS16330 PF01012 Electron transfer flavoprotein domain AFL94_RS16345 PF00378 Enoyl-CoA hydratase/isomerase AFL94_RS16350 PF01144 Coenzyme A transferase AFL94_RS16360 PF03060 Nitronate monooxygenase AFL94_RS16380 PF07690 Major Facilitator Superfamily AFL94_RS16385 PF00108 Thiolase, N-terminal domain AFL94_RS16385 PF02803 Thiolase, C-terminal domain AFL94_RS16395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS16395 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS16395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS16400 PF00378 Enoyl-CoA hydratase/isomerase AFL94_RS16405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS16405 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS16405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS16410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS16410 PF02770 Acyl-CoA dehydrogenase, middle domain AFL94_RS16410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS16415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFL94_RS16415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS16430 PF01144 Coenzyme A transferase AFL94_RS16440 PF02803 Thiolase, C-terminal domain AFL94_RS16440 PF00108 Thiolase, N-terminal domain AFL94_RS16455 PF07690 Major Facilitator Superfamily AFL94_RS16460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_RS16485 PF00239 Resolvase, N terminal domain AFL94_RS16485 PF02796 Helix-turn-helix domain of resolvase AFL94_RS16500 PF01638 HxlR-like helix-turn-helix AFL94_RS16540 PF10145 Phage-related minor tail protein AFL94_RS16540 PF01464 Transglycosylase SLT domain AFL94_RS16540 PF01551 Peptidase family M23 AFL94_RS16555 PF01381 Helix-turn-helix AFL94_RS16560 PF01613 Flavin reductase like domain AFL94_RS16565 PF00772 DnaB-like helicase N terminal domain AFL94_RS16565 PF03796 DnaB-like helicase C terminal domain AFL94_RS16575 PF07690 Major Facilitator Superfamily AFL94_RS16590 PF05726 Pirin C-terminal cupin domain AFL94_RS16590 PF02678 Pirin AFL94_RS16595 PF01047 MarR family AFL94_RS16645 PF00576 HIUase/Transthyretin family AFL94_RS16650 PF01014 Uricase AFL94_RS16655 PF00860 Permease family AFL94_RS16675 PF00324 Amino acid permease AFL94_RS16680 PF00795 Carbon-nitrogen hydrolase AFL94_RS16690 PF06029 AlkA N-terminal domain AFL94_RS16690 PF02805 Metal binding domain of Ada AFL94_RS16690 PF00730 HhH-GPD superfamily base excision DNA repair protein AFL94_RS16690 PF12833 Helix-turn-helix domain AFL94_RS16700 PF00106 short chain dehydrogenase AFL94_RS16715 PF07690 Major Facilitator Superfamily AFL94_RS16720 PF00324 Amino acid permease AFL94_RS16730 PF00480 ROK family AFL94_RS16740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_RS16740 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_RS16750 PF00294 pfkB family carbohydrate kinase AFL94_RS16760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFL94_RS16760 PF00205 Thiamine pyrophosphate enzyme, central domain AFL94_RS16760 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFL94_RS16765 PF00171 Aldehyde dehydrogenase family AFL94_RS16770 PF01261 Xylose isomerase-like TIM barrel AFL94_RS16775 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_RS16775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_RS16780 PF01261 Xylose isomerase-like TIM barrel AFL94_RS16785 PF00083 Sugar (and other) transporter AFL94_RS16790 PF00582 Universal stress protein family AFL94_RS16795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_RS16795 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_RS16800 PF00356 Bacterial regulatory proteins, lacI family AFL94_RS16805 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_RS16805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_RS16810 PF01261 Xylose isomerase-like TIM barrel AFL94_RS16815 PF04962 KduI/IolB family AFL94_RS16820 PF00392 Bacterial regulatory proteins, gntR family AFL94_RS16820 PF07702 UTRA domain AFL94_RS16825 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_RS16825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_RS16840 PF02653 Branched-chain amino acid transport system / permease component AFL94_RS16845 PF00005 ABC transporter AFL94_RS16850 PF00356 Bacterial regulatory proteins, lacI family AFL94_RS16855 PF01261 Xylose isomerase-like TIM barrel AFL94_RS16860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_RS16860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_RS16865 PF13407 Periplasmic binding protein domain AFL94_RS16870 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFL94_RS16870 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFL94_RS16880 PF00440 Bacterial regulatory proteins, tetR family AFL94_RS16880 PF16859 Tetracyclin repressor-like, C-terminal domain AFL94_RS16890 PF00664 ABC transporter transmembrane region AFL94_RS16890 PF00005 ABC transporter AFL94_RS16895 PF00890 FAD binding domain AFL94_RS16905 PF09339 IclR helix-turn-helix domain AFL94_RS16905 PF01614 Bacterial transcriptional regulator AFL94_RS16910 PF03949 Malic enzyme, NAD binding domain AFL94_RS16910 PF00390 Malic enzyme, N-terminal domain AFL94_RS16915 PF01274 Malate synthase AFL94_RS16925 PF07883 Cupin domain AFL94_RS16925 PF05899 Protein of unknown function (DUF861) AFL94_RS16940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFL94_RS16950 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFL94_RS16955 PF12697 Alpha/beta hydrolase family AFL94_RS16960 PF00175 Oxidoreductase NAD-binding domain AFL94_RS16960 PF00111 2Fe-2S iron-sulfur cluster binding domain AFL94_RS16960 PF00970 Oxidoreductase FAD-binding domain AFL94_RS16970 PF00355 Rieske [2Fe-2S] domain AFL94_RS16975 PF00890 FAD binding domain AFL94_RS16980 PF00378 Enoyl-CoA hydratase/isomerase AFL94_RS16980 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFL94_RS16980 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFL94_RS16985 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS16985 PF00501 AMP-binding enzyme AFL94_RS16995 PF00005 ABC transporter AFL94_RS17005 PF00665 Integrase core domain AFL94_RS17005 PF13333 Integrase core domain AFL94_RS17005 PF13276 HTH-like domain AFL94_RS17025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFL94_RS17025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFL94_RS17030 PF00083 Sugar (and other) transporter AFL94_RS17030 PF07690 Major Facilitator Superfamily AFL94_RS17045 PF13333 Integrase core domain AFL94_RS17045 PF00665 Integrase core domain AFL94_RS17045 PF13276 HTH-like domain AFL94_RS17070 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFL94_RS17075 PF01758 Sodium Bile acid symporter family AFL94_RS17080 PF01022 Bacterial regulatory protein, arsR family AFL94_RS17090 PF17932 Tetracyclin repressor-like, C-terminal domain AFL94_RS17090 PF00440 Bacterial regulatory proteins, tetR family AFL94_RS17095 PF00561 alpha/beta hydrolase fold AFL94_RS17100 PF04303 PrpF protein AFL94_RS17105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_RS17115 PF00355 Rieske [2Fe-2S] domain AFL94_RS17125 PF07690 Major Facilitator Superfamily AFL94_RS17130 PF07690 Major Facilitator Superfamily AFL94_RS17135 PF00108 Thiolase, N-terminal domain AFL94_RS17135 PF02803 Thiolase, C-terminal domain AFL94_RS17160 PF01548 Transposase AFL94_RS17160 PF02371 Transposase IS116/IS110/IS902 family AFL94_RS17165 PF02371 Transposase IS116/IS110/IS902 family AFL94_RS17165 PF01548 Transposase AFL94_RS17185 PF01527 Transposase AFL94_RS17190 PF00665 Integrase core domain AFL94_RS17190 PF13276 HTH-like domain AFL94_RS17250 PF01636 Phosphotransferase enzyme family AFL94_RS17255 PF00313 'Cold-shock' DNA-binding domain AFL94_RS17260 PF00762 Ferrochelatase AFL94_RS17265 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFL94_RS17270 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AFL94_RS17275 PF00589 Phage integrase family AFL94_RS17275 PF13495 Phage integrase, N-terminal SAM-like domain AFL94_RS17305 PF00781 Diacylglycerol kinase catalytic domain AFL94_RS17310 PF02796 Helix-turn-helix domain of resolvase AFL94_RS17310 PF00239 Resolvase, N terminal domain AFL94_RS17325 PF00158 Sigma-54 interaction domain AFL94_RS17325 PF13426 PAS domain AFL94_RS17325 PF02954 Bacterial regulatory protein, Fis family AFL94_RS17330 PF00501 AMP-binding enzyme AFL94_RS17330 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS17340 PF07995 Glucose / Sorbosone dehydrogenase AFL94_RS17345 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AFL94_RS17345 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AFL94_RS17375 PF08543 Phosphomethylpyrimidine kinase AFL94_RS17380 PF03948 Ribosomal protein L9, C-terminal domain AFL94_RS17380 PF01281 Ribosomal protein L9, N-terminal domain AFL94_RS17385 PF01084 Ribosomal protein S18 AFL94_RS17390 PF00436 Single-strand binding protein family AFL94_RS17395 PF01250 Ribosomal protein S6 AFL94_RS17400 PF01757 Acyltransferase family AFL94_RS17405 PF01266 FAD dependent oxidoreductase AFL94_RS17420 PF02127 Aminopeptidase I zinc metalloprotease (M18) AFL94_RS17430 PF00196 Bacterial regulatory proteins, luxR family AFL94_RS17430 PF00072 Response regulator receiver domain AFL94_RS17435 PF07730 Histidine kinase AFL94_RS17435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFL94_RS17445 PF00005 ABC transporter AFL94_RS17470 PF00501 AMP-binding enzyme AFL94_RS17470 PF13193 AMP-binding enzyme C-terminal domain AFL94_RS17480 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_RS17490 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFL94_RS17500 PF01494 FAD binding domain AFL94_RS17505 PF00171 Aldehyde dehydrogenase family AFL94_RS17510 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFL94_RS17520 PF07690 Major Facilitator Superfamily AFL94_RS17530 PF00005 ABC transporter AFL94_RS17535 PF02653 Branched-chain amino acid transport system / permease component AFL94_RS17545 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS17545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFL94_RS17550 PF03061 Thioesterase superfamily AFL94_RS17550 PF01008 Initiation factor 2 subunit family AFL94_RS17555 PF02803 Thiolase, C-terminal domain AFL94_RS17555 PF00108 Thiolase, N-terminal domain AFL94_RS17560 PF16859 Tetracyclin repressor-like, C-terminal domain AFL94_RS17560 PF00440 Bacterial regulatory proteins, tetR family AFL94_RS17570 PF14525 AraC-binding-like domain AFL94_RS17570 PF12833 Helix-turn-helix domain AFL94_RS17590 PF01565 FAD binding domain AFL94_RS17590 PF02913 FAD linked oxidases, C-terminal domain AFL94_RS17620 PF02348 Cytidylyltransferase AFL94_RS17625 PF08666 SAF domain AFL94_RS17625 PF03102 NeuB family AFL94_RS17630 PF00535 Glycosyl transferase family 2 AFL94_RS17630 PF01501 Glycosyl transferase family 8 AFL94_RS17650 PF01658 Myo-inositol-1-phosphate synthase AFL94_RS17655 PF01743 Poly A polymerase head domain AFL94_RS17655 PF12627 Probable RNA and SrmB- binding site of polymerase A AFL94_RS17655 PF01966 HD domain AFL94_RS17660 PF00293 NUDIX domain AFL94_RS17675 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFL94_RS17680 PF00085 Thioredoxin AFL94_RS17690 PF02195 ParB-like nuclease domain AFL94_RS17690 PF17762 HTH domain found in ParB protein AFL94_RS17695 PF13614 AAA domain AFL94_RS17700 PF02527 rRNA small subunit methyltransferase G AFL94_RS17710 PF02096 60Kd inner membrane protein AFL94_RS17715 PF01809 Putative membrane protein insertion efficiency factor