ATC04_RS00050	SM00470	ParB-like nuclease domain
ATC04_RS00080	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS00100	SM00857	Resolvase, N terminal domain
ATC04_RS00110	SM00342	helix_turn_helix, arabinose operon control protein
ATC04_RS00130	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS00130	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC04_RS00175	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS00225	SM00905	Dihydroneopterin aldolase
ATC04_RS00240	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS00285	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS00315	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC04_RS00325	SM00450	Rhodanese Homology Domain
ATC04_RS00340	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS00375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS00420	SM00886	Stress responsive A/B Barrel Domain
ATC04_RS00430	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS00495	SM00354	helix_turn _helix lactose operon repressor
ATC04_RS00515	SM00240	Forkhead associated domain
ATC04_RS00520	SM00240	Forkhead associated domain
ATC04_RS00525	SM00331	Sigma factor PP2C-like phosphatases
ATC04_RS00525	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC04_RS00540	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC04_RS00540	SM00740	ATC04_RS00540
ATC04_RS00545	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC04_RS00545	SM00740	ATC04_RS00545
ATC04_RS00625	SM00434	DNA Topoisomerase IV
ATC04_RS00630	SM00387	Histidine kinase-like ATPases
ATC04_RS00630	SM00433	TopoisomeraseII
ATC04_RS00645	SM00480	DNA polymerase III beta subunit
ATC04_RS00650	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS00650	SM00760	Bacterial dnaA protein helix-turn-helix domain
ATC04_RS00660	SM01234	ATC04_RS00660
ATC04_RS00670	SM00393	Putative single-stranded nucleic acids-binding domain
ATC04_RS00685	SM00470	ParB-like nuclease domain
ATC04_RS00715	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC04_RS00770	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS00785	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS00785	SM00448	cheY-homologous receiver domain
ATC04_RS00920	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS00925	SM00903	Flavin reductase like domain
ATC04_RS00960	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS00975	SM00822	ATC04_RS00975
ATC04_RS01025	SM00354	helix_turn _helix lactose operon repressor
ATC04_RS01035	SM01007	Class II Aldolase and Adducin N-terminal domain
ATC04_RS01050	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS01110	SM00478	endonuclease III
ATC04_RS01110	SM01009	AlkA N-terminal domain
ATC04_RS01115	SM00822	ATC04_RS01115
ATC04_RS01125	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS01160	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS01175	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS01180	SM00919	Malic enzyme, NAD binding domain
ATC04_RS01180	SM01274	ATC04_RS01180
ATC04_RS01205	SM00248	ankyrin repeats
ATC04_RS01270	SM00226	Low molecular weight phosphatase family
ATC04_RS01280	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS01320	SM00822	ATC04_RS01320
ATC04_RS01390	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS01395	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS01400	SM00822	ATC04_RS01400
ATC04_RS01410	SM00882	Coenzyme A transferase
ATC04_RS01415	SM00882	Coenzyme A transferase
ATC04_RS01470	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS01485	SM00882	Coenzyme A transferase
ATC04_RS01490	SM00882	Coenzyme A transferase
ATC04_RS01510	SM00893	Electron transfer flavoprotein domain
ATC04_RS01515	SM00893	Electron transfer flavoprotein domain
ATC04_RS01540	SM00903	Flavin reductase like domain
ATC04_RS01550	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC04_RS01560	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS01580	SM00893	Electron transfer flavoprotein domain
ATC04_RS01585	SM00893	Electron transfer flavoprotein domain
ATC04_RS01590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS01590	SM00895	ATC04_RS01590
ATC04_RS01605	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS01610	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS01615	SM01130	ATC04_RS01615
ATC04_RS01635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS01635	SM00895	ATC04_RS01635
ATC04_RS01685	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS01720	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS01720	SM00895	ATC04_RS01720
ATC04_RS01790	SM00052	Putative diguanylate phosphodiesterase
ATC04_RS01795	SM00267	diguanylate cyclase
ATC04_RS01865	SM00878	Biotin carboxylase C-terminal domain
ATC04_RS01890	SM00642	Alpha-amylase domain
ATC04_RS01925	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS01965	SM00357	Cold shock protein domain
ATC04_RS02030	SM01022	ATC04_RS02030
ATC04_RS02050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_RS02050	SM00387	Histidine kinase-like ATPases
ATC04_RS02050	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_RS02055	SM00448	cheY-homologous receiver domain
ATC04_RS02055	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS02080	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC04_RS02080	SM01091	Transporter associated domain
ATC04_RS02085	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC04_RS02100	SM00894	Excalibur calcium-binding domain
ATC04_RS02150	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS02205	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS02385	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
ATC04_RS02405	SM00959	Rho termination factor, N-terminal domain
ATC04_RS02415	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC04_RS02460	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS02495	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS02500	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS02510	SM00881	CoA binding domain
ATC04_RS02625	SM00893	Electron transfer flavoprotein domain
ATC04_RS02630	SM00893	Electron transfer flavoprotein domain
ATC04_RS02650	SM00287	Bacterial SH3 domain homologues
ATC04_RS02660	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS02695	SM00849	Metallo-beta-lactamase superfamily
ATC04_RS02705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS02705	SM00895	ATC04_RS02705
ATC04_RS02780	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS02855	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS02865	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS02895	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS02895	SM00448	cheY-homologous receiver domain
ATC04_RS03065	SM01011	Aminopeptidase P, N-terminal domain
ATC04_RS03070	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS03085	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS03100	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS03100	SM00448	cheY-homologous receiver domain
ATC04_RS03145	SM01092	CO dehydrogenase flavoprotein C-terminal domain
ATC04_RS03150	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ATC04_RS03165	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS03165	SM00895	ATC04_RS03165
ATC04_RS03175	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS03200	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ATC04_RS03250	SM00861	Transketolase, pyrimidine binding domain
ATC04_RS03280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS03280	SM00895	ATC04_RS03280
ATC04_RS03310	SM00855	Phosphoglycerate mutase family
ATC04_RS03325	SM00882	Coenzyme A transferase
ATC04_RS03330	SM00882	Coenzyme A transferase
ATC04_RS03340	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS03345	SM01119	ATC04_RS03345
ATC04_RS03400	SM00344	helix_turn_helix ASNC type
ATC04_RS03425	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS03540	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS03565	SM00919	Malic enzyme, NAD binding domain
ATC04_RS03565	SM01274	ATC04_RS03565
ATC04_RS03610	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS03625	SM00867	YceI-like domain 
ATC04_RS03660	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS03660	SM00895	ATC04_RS03660
ATC04_RS03680	SM00487	DEAD-like helicases superfamily
ATC04_RS03680	SM00490	helicase superfamily c-terminal domain
ATC04_RS03685	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS03715	SM00344	helix_turn_helix ASNC type
ATC04_RS03770	SM00226	Low molecular weight phosphatase family
ATC04_RS03780	SM00344	helix_turn_helix ASNC type
ATC04_RS03790	SM00422	helix_turn_helix, mercury resistance
ATC04_RS03810	SM00287	Bacterial SH3 domain homologues
ATC04_RS03820	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS03835	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS03840	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_RS03850	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS03850	SM00866	ATC04_RS03850
ATC04_RS03860	SM00529	Helix-turn-helix diphteria tox regulatory element
ATC04_RS03860	SM00899	ATC04_RS03860
ATC04_RS03910	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS03915	SM00822	ATC04_RS03915
ATC04_RS03925	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC04_RS03945	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS03960	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS03960	SM00895	ATC04_RS03960
ATC04_RS04000	SM00822	ATC04_RS04000
ATC04_RS04090	SM00344	helix_turn_helix ASNC type
ATC04_RS04140	SM00422	helix_turn_helix, mercury resistance
ATC04_RS04160	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS04165	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS04165	SM00448	cheY-homologous receiver domain
ATC04_RS04170	SM00387	Histidine kinase-like ATPases
ATC04_RS04190	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS04195	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS04220	SM00344	helix_turn_helix ASNC type
ATC04_RS04240	SM00357	Cold shock protein domain
ATC04_RS04275	SM00363	S4 RNA-binding domain
ATC04_RS04285	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC04_RS04285	SM00732	Likely ribonuclease with RNase H fold.
ATC04_RS04295	SM00287	Bacterial SH3 domain homologues
ATC04_RS04300	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS04300	SM00448	cheY-homologous receiver domain
ATC04_RS04320	SM00752	Horizontally Transferred TransMembrane Domain
ATC04_RS04340	SM00487	DEAD-like helicases superfamily
ATC04_RS04340	SM00490	helicase superfamily c-terminal domain
ATC04_RS04340	SM00847	Helicase associated domain (HA2)  Add an annotation
ATC04_RS04395	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS04410	SM00849	Metallo-beta-lactamase superfamily
ATC04_RS04425	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS04430	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS04435	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS04440	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS04505	SM00924	MgtE intracellular N domain
ATC04_RS04565	SM00342	helix_turn_helix, arabinose operon control protein
ATC04_RS04615	SM01236	ATC04_RS04615
ATC04_RS04620	SM00704	CDGSH-type zinc finger. Function unknown.
ATC04_RS04660	SM00822	ATC04_RS04660
ATC04_RS04685	SM00344	helix_turn_helix ASNC type
ATC04_RS04700	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS04715	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS04745	SM00411	bacterial (prokaryotic) histone like domain
ATC04_RS04750	SM00411	bacterial (prokaryotic) histone like domain
ATC04_RS04805	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS04815	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_RS04900	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS04910	SM00155	Phospholipase D. Active site motifs.
ATC04_RS04925	SM00226	Low molecular weight phosphatase family
ATC04_RS04935	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS04945	SM00487	DEAD-like helicases superfamily
ATC04_RS04945	SM00490	helicase superfamily c-terminal domain
ATC04_RS04970	SM00271	DnaJ molecular chaperone homology domain
ATC04_RS04975	SM00422	helix_turn_helix, mercury resistance
ATC04_RS05005	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS05005	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC04_RS05020	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS05065	SM01209	ATC04_RS05065
ATC04_RS05065	SM01210	ATC04_RS05065
ATC04_RS05075	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS05080	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS05105	SM00100	Cyclic nucleotide-monophosphate binding domain
ATC04_RS05105	SM00419	helix_turn_helix, cAMP Regulatory protein
ATC04_RS05130	SM00478	endonuclease III
ATC04_RS05130	SM00525	ATC04_RS05130
ATC04_RS05140	SM00482	DNA polymerase A domain
ATC04_RS05180	SM00487	DEAD-like helicases superfamily
ATC04_RS05180	SM00490	helicase superfamily c-terminal domain
ATC04_RS05190	SM00450	Rhodanese Homology Domain
ATC04_RS05205	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS05210	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ATC04_RS05210	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ATC04_RS05210	SM00493	ATC04_RS05210
ATC04_RS05250	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS05255	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATC04_RS05275	SM00881	CoA binding domain
ATC04_RS05285	SM00855	Phosphoglycerate mutase family
ATC04_RS05355	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS05365	SM00090	RIO-like kinase
ATC04_RS05430	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_RS05430	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ATC04_RS05435	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS05475	SM00344	helix_turn_helix ASNC type
ATC04_RS05485	SM00861	Transketolase, pyrimidine binding domain
ATC04_RS05500	SM00014	Acid phosphatase homologues
ATC04_RS05505	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC04_RS05520	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS05530	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_RS05615	SM00487	DEAD-like helicases superfamily
ATC04_RS05615	SM00490	helicase superfamily c-terminal domain
ATC04_RS05835	SM00710	Parallel beta-helix repeats
ATC04_RS05875	SM00954	Region found in RelA / SpoT proteins
ATC04_RS05925	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC04_RS05950	SM00855	Phosphoglycerate mutase family
ATC04_RS05965	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS06010	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS06010	SM00448	cheY-homologous receiver domain
ATC04_RS06030	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ATC04_RS06035	SM00649	Ribosomal protein L11/L12
ATC04_RS06070	SM00663	RNA polymerase I subunit A N-terminus
ATC04_RS06090	SM00838	Elongation factor G C-terminus
ATC04_RS06090	SM00889	Elongation factor G, domain IV
ATC04_RS06105	SM01403	ATC04_RS06105
ATC04_RS06125	SM01382	ATC04_RS06125
ATC04_RS06125	SM01383	ATC04_RS06125
ATC04_RS06140	SM00322	K homology RNA-binding domain
ATC04_RS06165	SM00342	helix_turn_helix, arabinose operon control protein
ATC04_RS06180	SM01374	ATC04_RS06180
ATC04_RS06185	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATC04_RS06240	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC04_RS06255	SM00662	RNA polymerases D
ATC04_RS06290	SM00984	UDP binding domain
ATC04_RS06340	SM01005	Alanine racemase, C-terminal domain
ATC04_RS06385	SM00883	Chaperonin 10 Kd subunit
ATC04_RS06410	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC04_RS06410	SM01240	ATC04_RS06410
ATC04_RS06425	SM00507	HNH nucleases
ATC04_RS06435	SM01240	ATC04_RS06435
ATC04_RS06465	SM00858	ATC04_RS06465
ATC04_RS06485	SM00344	helix_turn_helix ASNC type
ATC04_RS06580	SM00855	Phosphoglycerate mutase family
ATC04_RS06600	SM00363	S4 RNA-binding domain
ATC04_RS06635	SM00849	Metallo-beta-lactamase superfamily
ATC04_RS06665	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS06675	SM00226	Low molecular weight phosphatase family
ATC04_RS06755	SM00450	Rhodanese Homology Domain
ATC04_RS06765	SM00838	Elongation factor G C-terminus
ATC04_RS06775	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS06830	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_RS06835	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS06875	SM00924	MgtE intracellular N domain
ATC04_RS06885	SM01011	Aminopeptidase P, N-terminal domain
ATC04_RS06890	SM00481	DNA polymerase alpha chain like domain
ATC04_RS06900	SM00487	DEAD-like helicases superfamily
ATC04_RS06900	SM00490	helicase superfamily c-terminal domain
ATC04_RS06905	SM00955	ATC04_RS06905
ATC04_RS06955	SM01004	Delta-aminolevulinic acid dehydratase
ATC04_RS06980	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS06980	SM00930	ATC04_RS06980
ATC04_RS06985	SM00479	ATC04_RS06985
ATC04_RS07015	SM00341	Helicase and RNase D C-terminal
ATC04_RS07075	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATC04_RS07080	SM00893	Electron transfer flavoprotein domain
ATC04_RS07085	SM00893	Electron transfer flavoprotein domain
ATC04_RS07105	SM00271	DnaJ molecular chaperone homology domain
ATC04_RS07110	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC04_RS07195	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS07200	SM00830	Chorismate mutase type II
ATC04_RS07210	SM00448	cheY-homologous receiver domain
ATC04_RS07210	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS07215	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_RS07215	SM00387	Histidine kinase-like ATPases
ATC04_RS07215	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_RS07220	SM00909	Sporulation and spore germination
ATC04_RS07240	SM00957	SecA DEAD-like domain
ATC04_RS07240	SM00958	SecA preprotein cross-linking domain
ATC04_RS07275	SM00387	Histidine kinase-like ATPases
ATC04_RS07280	SM00257	Lysin motif
ATC04_RS07365	SM00864	Tubulin/FtsZ family, GTPase domain
ATC04_RS07365	SM00865	Tubulin/FtsZ family, C-terminal domain
ATC04_RS07395	SM00363	S4 RNA-binding domain
ATC04_RS07400	SM00481	DNA polymerase alpha chain like domain
ATC04_RS07430	SM01230	ATC04_RS07430
ATC04_RS07455	SM01230	ATC04_RS07455
ATC04_RS07470	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC04_RS07480	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC04_RS07525	SM00387	Histidine kinase-like ATPases
ATC04_RS07525	SM00433	TopoisomeraseII
ATC04_RS07550	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS07555	SM00434	DNA Topoisomerase IV
ATC04_RS07560	SM00881	CoA binding domain
ATC04_RS07675	SM00861	Transketolase, pyrimidine binding domain
ATC04_RS07735	SM00341	Helicase and RNase D C-terminal
ATC04_RS07735	SM00474	3'-5' exonuclease
ATC04_RS07780	SM00450	Rhodanese Homology Domain
ATC04_RS07965	SM00448	cheY-homologous receiver domain
ATC04_RS07965	SM01012	ATC04_RS07965
ATC04_RS07990	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATC04_RS07990	SM00474	3'-5' exonuclease
ATC04_RS07990	SM00475	5'-3' exonuclease
ATC04_RS07990	SM00482	DNA polymerase A domain
ATC04_RS08005	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC04_RS08035	SM01043	Bacterial transcriptional activator domain
ATC04_RS08065	SM00487	DEAD-like helicases superfamily
ATC04_RS08065	SM00490	helicase superfamily c-terminal domain
ATC04_RS08075	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS08105	SM00235	Zinc-dependent metalloprotease
ATC04_RS08125	SM00487	DEAD-like helicases superfamily
ATC04_RS08125	SM00490	helicase superfamily c-terminal domain
ATC04_RS08140	SM00849	Metallo-beta-lactamase superfamily
ATC04_RS08145	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS08165	SM00014	Acid phosphatase homologues
ATC04_RS08180	SM00563	Phosphate acyltransferases
ATC04_RS08185	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATC04_RS08185	SM00465	GIY-YIG type nucleases (URI domain)
ATC04_RS08210	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATC04_RS08265	SM00861	Transketolase, pyrimidine binding domain
ATC04_RS08295	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS08315	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS08350	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS08360	SM00344	helix_turn_helix ASNC type
ATC04_RS08390	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS08395	SM00903	Flavin reductase like domain
ATC04_RS08400	SM00422	helix_turn_helix, mercury resistance
ATC04_RS08435	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC04_RS08435	SM01232	ATC04_RS08435
ATC04_RS08470	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS08470	SM00994	ClpX C4-type zinc finger
ATC04_RS08470	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC04_RS08530	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_RS08535	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS08555	SM00479	ATC04_RS08555
ATC04_RS08575	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS08575	SM00448	cheY-homologous receiver domain
ATC04_RS08610	SM00562	ATC04_RS08610
ATC04_RS08640	SM00756	ATC04_RS08640
ATC04_RS08645	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC04_RS08665	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ATC04_RS08755	SM00344	helix_turn_helix ASNC type
ATC04_RS08760	SM00822	ATC04_RS08760
ATC04_RS08790	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS08885	SM00357	Cold shock protein domain
ATC04_RS08895	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS08930	SM00849	Metallo-beta-lactamase superfamily
ATC04_RS08935	SM00829	Enoylreductase
ATC04_RS08965	SM00481	DNA polymerase alpha chain like domain
ATC04_RS08990	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS08995	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATC04_RS09005	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC04_RS09005	SM00876	Biotin and Thiamin Synthesis associated domain
ATC04_RS09035	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS09050	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC04_RS09050	SM01134	ATC04_RS09050
ATC04_RS09100	SM00854	Bacterial capsule synthesis protein PGA_cap
ATC04_RS09120	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATC04_RS09125	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS09130	SM01323	ATC04_RS09130
ATC04_RS09145	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC04_RS09145	SM00954	Region found in RelA / SpoT proteins
ATC04_RS09185	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS09190	SM00363	S4 RNA-binding domain
ATC04_RS09190	SM01390	ATC04_RS09190
ATC04_RS09205	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATC04_RS09210	SM00732	Likely ribonuclease with RNase H fold.
ATC04_RS09245	SM00841	Elongation factor P, C-terminal
ATC04_RS09245	SM01185	ATC04_RS09245
ATC04_RS09275	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ATC04_RS09280	SM00851	MGS-like domain
ATC04_RS09280	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATC04_RS09285	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATC04_RS09295	SM00072	Guanylate kinase homologues.
ATC04_RS09300	SM01409	ATC04_RS09300
ATC04_RS09375	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATC04_RS09400	SM00838	Elongation factor G C-terminus
ATC04_RS09405	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC04_RS09425	SM00271	DnaJ molecular chaperone homology domain
ATC04_RS09435	SM00909	Sporulation and spore germination
ATC04_RS09450	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC04_RS09450	SM01091	Transporter associated domain
ATC04_RS09465	SM00917	LeuA allosteric (dimerisation) domain
ATC04_RS09520	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS09520	SM00866	ATC04_RS09520
ATC04_RS09590	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS09590	SM00419	helix_turn_helix, cAMP Regulatory protein
ATC04_RS09615	SM00244	prohibitin homologues
ATC04_RS09635	SM00487	DEAD-like helicases superfamily
ATC04_RS09635	SM00490	helicase superfamily c-terminal domain
ATC04_RS09635	SM01142	ATC04_RS09635
ATC04_RS09685	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS09745	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_RS09745	SM00387	Histidine kinase-like ATPases
ATC04_RS09745	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_RS09750	SM00448	cheY-homologous receiver domain
ATC04_RS09750	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS09790	SM00822	ATC04_RS09790
ATC04_RS09865	SM00829	Enoylreductase
ATC04_RS09910	SM00487	DEAD-like helicases superfamily
ATC04_RS09940	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS09975	SM00822	ATC04_RS09975
ATC04_RS10000	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS10005	SM00954	Region found in RelA / SpoT proteins
ATC04_RS10050	SM00479	ATC04_RS10050
ATC04_RS10065	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS10070	SM00829	Enoylreductase
ATC04_RS10080	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS10120	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATC04_RS10200	SM00829	Enoylreductase
ATC04_RS10220	SM01350	ATC04_RS10220
ATC04_RS10225	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS10225	SM00895	ATC04_RS10225
ATC04_RS10295	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ATC04_RS10305	SM00825	Beta-ketoacyl synthase
ATC04_RS10335	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS10405	SM00507	HNH nucleases
ATC04_RS10440	SM00155	Phospholipase D. Active site motifs.
ATC04_RS10475	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS10475	SM00962	SRP54-type protein, GTPase domain
ATC04_RS10475	SM00963	SRP54-type protein, helical bundle domain
ATC04_RS10515	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS10515	SM00962	SRP54-type protein, GTPase domain
ATC04_RS10515	SM00963	SRP54-type protein, helical bundle domain
ATC04_RS10530	SM00968	SMC proteins Flexible Hinge Domain
ATC04_RS10540	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC04_RS10540	SM01232	ATC04_RS10540
ATC04_RS10545	SM00358	Double-stranded RNA binding motif
ATC04_RS10545	SM00535	Ribonuclease III family
ATC04_RS10610	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS10650	SM00487	DEAD-like helicases superfamily
ATC04_RS10650	SM00490	helicase superfamily c-terminal domain
ATC04_RS10655	SM01120	ATC04_RS10655
ATC04_RS10680	SM00563	Phosphate acyltransferases
ATC04_RS10760	SM01329	ATC04_RS10760
ATC04_RS10770	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS10770	SM00448	cheY-homologous receiver domain
ATC04_RS10830	SM00710	Parallel beta-helix repeats
ATC04_RS10850	SM00226	Low molecular weight phosphatase family
ATC04_RS10880	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ATC04_RS10880	SM00560	LamG-like jellyroll fold domain
ATC04_RS10905	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS11005	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS11010	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS11085	SM00052	Putative diguanylate phosphodiesterase
ATC04_RS11085	SM00267	diguanylate cyclase
ATC04_RS11130	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS11145	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS11320	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS11405	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS11465	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS11480	SM00507	HNH nucleases
ATC04_RS11490	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS11490	SM00895	ATC04_RS11490
ATC04_RS11510	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC04_RS11520	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS11565	SM00642	Alpha-amylase domain
ATC04_RS11570	SM00354	helix_turn _helix lactose operon repressor
ATC04_RS11580	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS11610	SM00479	ATC04_RS11610
ATC04_RS11620	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS11625	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS11725	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS11725	SM00487	DEAD-like helicases superfamily
ATC04_RS11735	SM00507	HNH nucleases
ATC04_RS11745	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS11790	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS11845	SM00937	ATC04_RS11845
ATC04_RS11850	SM00357	Cold shock protein domain
ATC04_RS11850	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS11850	SM00959	Rho termination factor, N-terminal domain
ATC04_RS11875	SM00836	DALR anticodon binding domain
ATC04_RS11875	SM01016	Arginyl tRNA synthetase N terminal dom
ATC04_RS11885	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS11900	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS11900	SM00487	DEAD-like helicases superfamily
ATC04_RS11900	SM00490	helicase superfamily c-terminal domain
ATC04_RS11900	SM00847	Helicase associated domain (HA2)  Add an annotation
ATC04_RS11910	SM00450	Rhodanese Homology Domain
ATC04_RS11915	SM00849	Metallo-beta-lactamase superfamily
ATC04_RS11940	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS11950	SM01091	Transporter associated domain
ATC04_RS11955	SM00861	Transketolase, pyrimidine binding domain
ATC04_RS11990	SM00529	Helix-turn-helix diphteria tox regulatory element
ATC04_RS12035	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS12040	SM00937	ATC04_RS12040
ATC04_RS12080	SM00857	Resolvase, N terminal domain
ATC04_RS12140	SM00857	Resolvase, N terminal domain
ATC04_RS12190	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC04_RS12190	SM00740	ATC04_RS12190
ATC04_RS12200	SM00563	Phosphate acyltransferases
ATC04_RS12225	SM00878	Biotin carboxylase C-terminal domain
ATC04_RS12235	SM00422	helix_turn_helix, mercury resistance
ATC04_RS12245	SM00422	helix_turn_helix, mercury resistance
ATC04_RS12250	SM00240	Forkhead associated domain
ATC04_RS12265	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS12300	SM00363	S4 RNA-binding domain
ATC04_RS12330	SM00387	Histidine kinase-like ATPases
ATC04_RS12335	SM00448	cheY-homologous receiver domain
ATC04_RS12350	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS12350	SM00895	ATC04_RS12350
ATC04_RS12375	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS12410	SM00363	S4 RNA-binding domain
ATC04_RS12475	SM00506	Appr-1"-p processing enzyme
ATC04_RS12505	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC04_RS12510	SM00829	Enoylreductase
ATC04_RS12555	SM00873	B3/4 domain
ATC04_RS12555	SM00874	tRNA synthetase B5 domain
ATC04_RS12555	SM00896	Ferredoxin-fold anticodon binding domain
ATC04_RS12575	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATC04_RS12630	SM00257	Lysin motif
ATC04_RS12640	SM00487	DEAD-like helicases superfamily
ATC04_RS12640	SM00491	ATC04_RS12640
ATC04_RS12665	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC04_RS12675	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS12685	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS12700	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS12700	SM00843	ATC04_RS12700
ATC04_RS12720	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS12745	SM00849	Metallo-beta-lactamase superfamily
ATC04_RS12750	SM01130	ATC04_RS12750
ATC04_RS12900	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC04_RS12900	SM00322	K homology RNA-binding domain
ATC04_RS12905	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS12905	SM00895	ATC04_RS12905
ATC04_RS12920	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS12960	SM00448	cheY-homologous receiver domain
ATC04_RS12965	SM00387	Histidine kinase-like ATPases
ATC04_RS13040	SM01387	ATC04_RS13040
ATC04_RS13050	SM00904	Riboflavin kinase
ATC04_RS13075	SM00507	HNH nucleases
ATC04_RS13095	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATC04_RS13160	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS13160	SM00448	cheY-homologous receiver domain
ATC04_RS13220	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATC04_RS13245	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS13265	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS13290	SM00861	Transketolase, pyrimidine binding domain
ATC04_RS13300	SM00344	helix_turn_helix ASNC type
ATC04_RS13310	SM01209	ATC04_RS13310
ATC04_RS13330	SM00387	Histidine kinase-like ATPases
ATC04_RS13335	SM00448	cheY-homologous receiver domain
ATC04_RS13335	SM00850	LytTr DNA-binding domain
ATC04_RS13430	SM01006	Siderophore biosynthesis protein domain
ATC04_RS13450	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS13475	SM00400	zinc finger
ATC04_RS13475	SM00493	ATC04_RS13475
ATC04_RS13480	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC04_RS13585	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC04_RS13585	SM01134	ATC04_RS13585
ATC04_RS13660	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS13685	SM00354	helix_turn _helix lactose operon repressor
ATC04_RS13695	SM00829	Enoylreductase
ATC04_RS13725	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS13730	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS13765	SM00845	GatB domain
ATC04_RS13835	SM00292	breast cancer carboxy-terminal domain
ATC04_RS13835	SM00532	Ligase N family
ATC04_RS13840	SM00331	Sigma factor PP2C-like phosphatases
ATC04_RS13840	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC04_RS13845	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
ATC04_RS13895	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS13945	SM00878	Biotin carboxylase C-terminal domain
ATC04_RS13990	SM01133	ATC04_RS13990
ATC04_RS14010	SM00487	DEAD-like helicases superfamily
ATC04_RS14010	SM00490	helicase superfamily c-terminal domain
ATC04_RS14010	SM00982	ATC04_RS14010
ATC04_RS14010	SM01058	CarD-like/TRCF domain
ATC04_RS14035	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATC04_RS14035	SM00267	diguanylate cyclase
ATC04_RS14055	SM01400	ATC04_RS14055
ATC04_RS14070	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS14135	SM00650	Ribosomal RNA adenine dimethylases
ATC04_RS14140	SM01208	ATC04_RS14140
ATC04_RS14160	SM00460	Transglutaminase/protease-like homologues
ATC04_RS14235	SM01001	AIR carboxylase
ATC04_RS14260	SM00947	Carbonic anhydrase
ATC04_RS14310	SM00670	Large family of predicted nucleotide-binding domains
ATC04_RS14415	SM01192	ATC04_RS14415
ATC04_RS14415	SM01193	ATC04_RS14415
ATC04_RS14440	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
ATC04_RS14460	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS14540	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS14540	SM00448	cheY-homologous receiver domain
ATC04_RS14565	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS14635	SM00342	helix_turn_helix, arabinose operon control protein
ATC04_RS14635	SM00871	Bacterial transcription activator, effector binding domain
ATC04_RS14680	SM00857	Resolvase, N terminal domain
ATC04_RS14695	SM00857	Resolvase, N terminal domain
ATC04_RS14750	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS14810	SM00422	helix_turn_helix, mercury resistance
ATC04_RS14820	SM00857	Resolvase, N terminal domain
ATC04_RS14860	SM00822	ATC04_RS14860
ATC04_RS14870	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS14870	SM00895	ATC04_RS14870
ATC04_RS14875	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC04_RS14900	SM01060	ATC04_RS14900
ATC04_RS14910	SM00796	Allophanate hydrolase subunit 1
ATC04_RS14910	SM00797	Allophanate hydrolase subunit 2
ATC04_RS14915	SM00878	Biotin carboxylase C-terminal domain
ATC04_RS14920	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS14920	SM00895	ATC04_RS14920
ATC04_RS14930	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS14960	SM00798	AICARFT/IMPCHase bienzyme
ATC04_RS14960	SM00851	MGS-like domain
ATC04_RS14980	SM00872	Alpha mannosidase, middle domain
ATC04_RS15035	SM00257	Lysin motif
ATC04_RS15090	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS15100	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS15165	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS15210	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS15235	SM00487	DEAD-like helicases superfamily
ATC04_RS15235	SM00490	helicase superfamily c-terminal domain
ATC04_RS15245	SM00881	CoA binding domain
ATC04_RS15280	SM00507	HNH nucleases
ATC04_RS15295	SM00529	Helix-turn-helix diphteria tox regulatory element
ATC04_RS15310	SM00357	Cold shock protein domain
ATC04_RS15320	SM00448	cheY-homologous receiver domain
ATC04_RS15320	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS15325	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_RS15325	SM00387	Histidine kinase-like ATPases
ATC04_RS15325	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_RS15360	SM00986	Uracil DNA glycosylase superfamily
ATC04_RS15360	SM00987	UreE urease accessory protein, C-terminal domain 
ATC04_RS15420	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS15480	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATC04_RS15485	SM00840	ATC04_RS15485
ATC04_RS15495	SM01058	CarD-like/TRCF domain
ATC04_RS15505	SM00448	cheY-homologous receiver domain
ATC04_RS15505	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS15510	SM00387	Histidine kinase-like ATPases
ATC04_RS15510	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_RS15525	SM00855	Phosphoglycerate mutase family
ATC04_RS15545	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS15585	SM00507	HNH nucleases
ATC04_RS15720	SM00829	Enoylreductase
ATC04_RS15750	SM00487	DEAD-like helicases superfamily
ATC04_RS15750	SM00490	helicase superfamily c-terminal domain
ATC04_RS15810	SM00354	helix_turn _helix lactose operon repressor
ATC04_RS15865	SM00855	Phosphoglycerate mutase family
ATC04_RS15870	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS15875	SM00448	cheY-homologous receiver domain
ATC04_RS15875	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS15880	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_RS15880	SM00387	Histidine kinase-like ATPases
ATC04_RS15880	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_RS15910	SM01322	ATC04_RS15910
ATC04_RS15925	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ATC04_RS15960	SM00852	Probable molybdopterin binding domain
ATC04_RS15965	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS15980	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC04_RS16005	SM00450	Rhodanese Homology Domain
ATC04_RS16015	SM00852	Probable molybdopterin binding domain
ATC04_RS16025	SM00852	Probable molybdopterin binding domain
ATC04_RS16055	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS16060	SM00882	Coenzyme A transferase
ATC04_RS16065	SM00882	Coenzyme A transferase
ATC04_RS16080	SM00346	helix_turn_helix isocitrate lyase regulation
ATC04_RS16110	SM00998	Adenylosuccinate lyase C-terminus
ATC04_RS16145	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS16180	SM00014	Acid phosphatase homologues
ATC04_RS16190	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS16190	SM00487	DEAD-like helicases superfamily
ATC04_RS16190	SM00490	helicase superfamily c-terminal domain
ATC04_RS16195	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC04_RS16195	SM01232	ATC04_RS16195
ATC04_RS16210	SM00822	ATC04_RS16210
ATC04_RS16240	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS16325	SM00421	helix_turn_helix, Lux Regulon
ATC04_RS16325	SM00448	cheY-homologous receiver domain
ATC04_RS16330	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS16330	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC04_RS16370	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS16405	SM00855	Phosphoglycerate mutase family
ATC04_RS16440	SM00448	cheY-homologous receiver domain
ATC04_RS16440	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS16455	SM00507	HNH nucleases
ATC04_RS16470	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS16475	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATC04_RS16475	SM00493	ATC04_RS16475
ATC04_RS16485	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS16505	SM00448	cheY-homologous receiver domain
ATC04_RS16510	SM00387	Histidine kinase-like ATPases
ATC04_RS16545	SM00248	ankyrin repeats
ATC04_RS16560	SM01211	ATC04_RS16560
ATC04_RS16640	SM00881	CoA binding domain
ATC04_RS16655	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS16720	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS16725	SM00062	Bacterial periplasmic substrate-binding proteins
ATC04_RS16765	SM00855	Phosphoglycerate mutase family
ATC04_RS16775	SM00881	CoA binding domain
ATC04_RS16800	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC04_RS16800	SM01134	ATC04_RS16800
ATC04_RS16850	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS16865	SM00788	Adenylosuccinate synthetase
ATC04_RS16915	SM00938	Nitrogen regulatory protein P-II
ATC04_RS16955	SM00344	helix_turn_helix ASNC type
ATC04_RS16965	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC04_RS16965	SM00387	Histidine kinase-like ATPases
ATC04_RS16965	SM00388	His Kinase A (phosphoacceptor) domain
ATC04_RS16970	SM00448	cheY-homologous receiver domain
ATC04_RS16970	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS17015	SM00240	Forkhead associated domain
ATC04_RS17015	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS17020	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC04_RS17055	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS17105	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS17215	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATC04_RS17275	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC04_RS17295	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC04_RS17295	SM00895	ATC04_RS17295
ATC04_RS17310	SM00450	Rhodanese Homology Domain
ATC04_RS17310	SM00849	Metallo-beta-lactamase superfamily
ATC04_RS17315	SM00450	Rhodanese Homology Domain
ATC04_RS17370	SM00829	Enoylreductase
ATC04_RS17380	SM00862	Transcriptional regulatory protein, C terminal
ATC04_RS17385	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC04_RS17400	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS17455	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS17465	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS17490	SM00382	ATPases associated with a variety of cellular activities
ATC04_RS17505	SM00478	endonuclease III
ATC04_RS17505	SM00525	ATC04_RS17505
ATC04_RS17540	SM00644	ATC04_RS17540
ATC04_RS17710	SM00470	ParB-like nuclease domain
ATC04_RS17740	SM00530	Helix-turn-helix XRE-family like proteins 
ATC04_RS17760	SM00857	Resolvase, N terminal domain
ATC04_RS17780	SM00644	ATC04_RS17780
