locus-tag	class	description
AYWB_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AYWB_RS00015	COG0360	Binds together with S18 to 16S ribosomal RNA
AYWB_RS00025	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AYWB_RS00030	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
AYWB_RS00030	COG0359	binds to the 23S rRNA
AYWB_RS00035	COG0305	Participates in initiation and elongation during chromosome replication
AYWB_RS00040	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AYWB_RS00055	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AYWB_RS00060	COG0525	valine-tRNA ligase activity
AYWB_RS00065	COG4720	Psort location CytoplasmicMembrane, score
AYWB_RS00070	COG1122	ATPase activity
AYWB_RS00080	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AYWB_RS00085	COG0071	Belongs to the small heat shock protein (HSP20) family
AYWB_RS00090	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AYWB_RS00095	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AYWB_RS00120	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AYWB_RS00125	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AYWB_RS00130	COG1970	mechanosensitive ion channel activity
AYWB_RS00190	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AYWB_RS00220	COG0281	malic enzyme
AYWB_RS00225	COG3493	citrate carrier protein
AYWB_RS00230	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AYWB_RS00255	COG1420	regulation of RNA biosynthetic process
AYWB_RS00260	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AYWB_RS00265	COG0443	Heat shock 70 kDa protein
AYWB_RS00270	COG0484	heat shock protein binding
AYWB_RS00275	COG0552	protein localization to endoplasmic reticulum
AYWB_RS00280	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AYWB_RS00290	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AYWB_RS00340	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AYWB_RS00380	COG1074	ATP-dependent DNA helicase activity
AYWB_RS00415	COG1461	Dihydroxyacetone kinase
AYWB_RS00430	COG1177	transmembrane transport
AYWB_RS00435	COG1176	ABC-type spermidine putrescine transport system, permease component I
AYWB_RS00440	COG3839	Belongs to the ABC transporter superfamily
AYWB_RS00450	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
AYWB_RS00485	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
AYWB_RS00490	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AYWB_RS00495	COG0537	adenosine 5'-monophosphoramidase activity
AYWB_RS00520	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AYWB_RS00525	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AYWB_RS00530	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AYWB_RS00545	COG0210	DNA helicase
AYWB_RS00555	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AYWB_RS00570	COG1183	phosphatidylcholine synthase activity
AYWB_RS00575	COG0688	phosphatidylethanolamine metabolic process
AYWB_RS00580	COG0504	CTP synthase activity
AYWB_RS00590	COG0765	amino acid transport
AYWB_RS00615	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AYWB_RS00620	COG0587	DNA-directed DNA polymerase activity
AYWB_RS00635	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AYWB_RS00640	COG0072	phenylalanine-tRNA ligase activity
AYWB_RS00640	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AYWB_RS00670	COG0084	hydrolase, TatD family'
AYWB_RS00680	COG0416	fatty acid biosynthetic process
AYWB_RS00685	COG0571	ribonuclease III activity
AYWB_RS00820	COG2801	Transposase and inactivated derivatives
AYWB_RS00835	COG0358	DNA primase activity
AYWB_RS00880	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AYWB_RS00985	COG0776	regulation of translation
AYWB_RS01025	COG0358	DNA primase activity
AYWB_RS01040	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AYWB_RS01085	COG0776	regulation of translation
AYWB_RS01120	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
AYWB_RS01125	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AYWB_RS01130	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
AYWB_RS01135	COG1307	EDD domain protein, DegV family
AYWB_RS01155	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AYWB_RS01160	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AYWB_RS01165	COG1214	PFAM Peptidase M22, glycoprotease
AYWB_RS01175	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AYWB_RS01180	COG0187	DNA topoisomerase II activity
AYWB_RS01285	COG0765	amino acid transport
AYWB_RS01290	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AYWB_RS01295	COG1126	abc transporter atp-binding protein
AYWB_RS01385	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AYWB_RS01400	COG0358	DNA primase activity
AYWB_RS01410	COG2801	Transposase and inactivated derivatives
AYWB_RS01415	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AYWB_RS01420	COG2801	Transposase and inactivated derivatives
AYWB_RS01455	COG2801	Transposase and inactivated derivatives
AYWB_RS01475	COG1051	belongs to the nudix hydrolase family
AYWB_RS01485	COG0653	protein targeting
AYWB_RS01490	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AYWB_RS01495	COG0228	four-way junction DNA binding
AYWB_RS01500	COG0336	Belongs to the RNA methyltransferase TrmD family
AYWB_RS01505	COG0335	large ribosomal subunit rRNA binding
AYWB_RS01510	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AYWB_RS01515	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AYWB_RS01520	COG0822	iron-sulfur transferase activity
AYWB_RS01525	COG0180	Tryptophanyl-tRNA synthetase
AYWB_RS01530	COG2176	DNA-directed DNA polymerase activity
AYWB_RS01540	COG0765	amino acid transport
AYWB_RS01550	COG0018	arginyl-trna synthetase
AYWB_RS01555	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
AYWB_RS01560	COG0513	Belongs to the DEAD box helicase family
AYWB_RS01570	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AYWB_RS01575	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AYWB_RS01580	COG1481	regulation of sporulation
AYWB_RS01585	COG0736	holo-[acyl-carrier-protein] synthase activity
AYWB_RS01590	COG0446	pyridine nucleotide-disulphide oxidoreductase
AYWB_RS01595	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AYWB_RS01610	COG0481	GTPase activity
AYWB_RS01615	COG0312	modulator of DNA gyrase
AYWB_RS01625	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AYWB_RS01630	COG0544	peptidyl-prolyl cis-trans isomerase activity
AYWB_RS01730	COG2801	Transposase and inactivated derivatives
AYWB_RS01805	COG0338	D12 class N6 adenine-specific DNA methyltransferase
AYWB_RS01895	COG0322	excinuclease ABC activity
AYWB_RS01900	COG0556	nucleotide-excision repair
AYWB_RS01945	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AYWB_RS01960	COG0095	Lipoate-protein ligase
AYWB_RS01970	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AYWB_RS01975	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AYWB_RS01980	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AYWB_RS01990	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AYWB_RS01995	COG4122	O-methyltransferase activity
AYWB_RS02000	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AYWB_RS02015	COG0742	ribosomal rna small subunit methyltransferase
AYWB_RS02020	COG3763	UPF0154 protein
AYWB_RS02040	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
AYWB_RS02045	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AYWB_RS02050	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AYWB_RS02065	COG0469	pyruvate kinase activity
AYWB_RS02075	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AYWB_RS02080	COG0148	phosphopyruvate hydratase activity
AYWB_RS02085	COG0166	Belongs to the GPI family
AYWB_RS02105	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AYWB_RS02120	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AYWB_RS02125	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AYWB_RS02130	COG1692	metallophosphoesterase
AYWB_RS02135	COG1418	mRNA catabolic process
AYWB_RS02160	COG0445	tRNA wobble uridine modification
AYWB_RS02165	COG0357	Ribosomal RNA small subunit methyltransferase G
AYWB_RS02180	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AYWB_RS02185	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AYWB_RS02190	COG0049	tRNA binding
AYWB_RS02195	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AYWB_RS02200	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AYWB_RS02205	COG0085	RNA polymerase activity
AYWB_RS02210	COG0222	ribosome binding
AYWB_RS02215	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AYWB_RS02220	COG0081	regulation of translation
AYWB_RS02225	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AYWB_RS02230	COG0250	Participates in transcription elongation, termination and antitermination
AYWB_RS02240	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AYWB_RS02245	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AYWB_RS02250	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AYWB_RS02255	COG1185	polyribonucleotide nucleotidyltransferase activity
AYWB_RS02295	COG0706	membrane insertase activity
AYWB_RS02300	COG0594	ribonuclease P activity
AYWB_RS02305	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AYWB_RS02310	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AYWB_RS02330	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AYWB_RS02345	COG0776	regulation of translation
AYWB_RS02350	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AYWB_RS02355	COG1160	GTP binding
AYWB_RS02360	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AYWB_RS02365	COG1187	pseudouridine synthase activity
AYWB_RS02370	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AYWB_RS02385	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AYWB_RS02395	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AYWB_RS02395	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AYWB_RS02400	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
AYWB_RS02405	COG0470	DNA polymerase III
AYWB_RS02410	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AYWB_RS02415	COG0101	tRNA pseudouridine synthase activity
AYWB_RS02420	COG0203	ribosomal protein L17
AYWB_RS02425	COG0202	RNA polymerase activity
AYWB_RS02430	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AYWB_RS02435	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AYWB_RS02440	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AYWB_RS02445	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AYWB_RS02450	COG0024	Methionine aminopeptidase
AYWB_RS02455	COG0563	adenylate kinase activity
AYWB_RS02460	COG0201	protein transport
AYWB_RS02465	COG0200	Binds to the 23S rRNA
AYWB_RS02470	COG1841	ribosomal large subunit assembly
AYWB_RS02475	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AYWB_RS02480	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AYWB_RS02485	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AYWB_RS02490	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AYWB_RS02495	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AYWB_RS02500	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AYWB_RS02505	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AYWB_RS02510	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
AYWB_RS02515	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AYWB_RS02520	COG0255	Belongs to the universal ribosomal protein uL29 family
AYWB_RS02525	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AYWB_RS02530	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AYWB_RS02535	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AYWB_RS02540	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AYWB_RS02545	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AYWB_RS02550	COG0089	rRNA binding
AYWB_RS02555	COG0088	Forms part of the polypeptide exit tunnel
AYWB_RS02560	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AYWB_RS02565	COG0051	transcription antitermination factor activity, RNA binding
AYWB_RS02570	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AYWB_RS02580	COG4608	Belongs to the ABC transporter superfamily
AYWB_RS02585	COG0444	Belongs to the ABC transporter superfamily
AYWB_RS02600	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AYWB_RS02605	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
AYWB_RS02620	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AYWB_RS02625	COG0012	GTP binding
AYWB_RS02630	COG1162	GTPase activity
AYWB_RS02635	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AYWB_RS02640	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
AYWB_RS02645	COG1122	ATPase activity
AYWB_RS02650	COG1122	ATPase activity
AYWB_RS02675	COG0126	phosphoglycerate kinase activity
AYWB_RS02690	COG0149	triose-phosphate isomerase activity
AYWB_RS02700	COG0233	cytoplasmic translational termination
AYWB_RS02705	COG0528	UMP kinase activity
AYWB_RS02710	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AYWB_RS02715	COG0052	Belongs to the universal ribosomal protein uS2 family
AYWB_RS02720	COG0756	dUTP diphosphatase activity
AYWB_RS02770	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AYWB_RS02775	COG1272	protein, Hemolysin III
AYWB_RS02790	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AYWB_RS02795	COG1253	flavin adenine dinucleotide binding
AYWB_RS02800	COG0193	aminoacyl-tRNA hydrolase activity
AYWB_RS02805	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AYWB_RS02810	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AYWB_RS02820	COG0195	Participates in both transcription termination and antitermination
AYWB_RS02830	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AYWB_RS02840	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AYWB_RS02845	COG0301	tRNA thio-modification
AYWB_RS02855	COG0215	cysteine-tRNA ligase activity
AYWB_RS02860	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AYWB_RS02865	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AYWB_RS02870	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AYWB_RS02885	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AYWB_RS02890	COG3870	Protein conserved in bacteria
AYWB_RS02905	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AYWB_RS02910	COG0564	pseudouridine synthase activity
AYWB_RS02915	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AYWB_RS02920	COG0037	tRNA processing
AYWB_RS02925	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AYWB_RS02930	COG0124	histidyl-tRNA synthetase
AYWB_RS02935	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AYWB_RS02940	COG0482	sulfurtransferase activity
AYWB_RS02955	COG0459	protein refolding
AYWB_RS02960	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AYWB_RS02970	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AYWB_RS02975	COG0254	rRNA binding
AYWB_RS02980	COG1435	thymidine kinase activity
AYWB_RS02985	COG0590	tRNA wobble adenosine to inosine editing
AYWB_RS02990	COG0617	tRNA 3'-terminal CCA addition
AYWB_RS02995	COG3481	metal-dependent phosphohydrolase, HD sub domain
AYWB_RS03040	COG0577	efflux transmembrane transporter activity
AYWB_RS03040	COG1136	(ABC) transporter
AYWB_RS03050	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AYWB_RS03055	COG1321	iron dependent repressor
AYWB_RS03055	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AYWB_RS03060	COG1121	(ABC) transporter
AYWB_RS03065	COG0803	Belongs to the bacterial solute-binding protein 9 family
AYWB_RS03075	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AYWB_RS03080	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AYWB_RS03090	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AYWB_RS03095	COG1054	Belongs to the UPF0176 family
AYWB_RS03105	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AYWB_RS03110	COG0268	Binds directly to 16S ribosomal RNA
AYWB_RS03120	COG0765	amino acid transport
AYWB_RS03160	COG4869	propanediol catabolic process
AYWB_RS03165	COG1078	dGTPase activity
AYWB_RS03170	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AYWB_RS03175	COG2088	sporulation resulting in formation of a cellular spore
AYWB_RS03180	COG2217	Heavy metal translocating P-type atpase
AYWB_RS03195	COG1758	RNA polymerase activity
AYWB_RS03200	COG0194	GDP metabolic process
AYWB_RS03205	COG0495	leucyl-tRNA aminoacylation
AYWB_RS03210	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AYWB_RS03215	COG1363	Peptidase, m42
AYWB_RS03225	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AYWB_RS03230	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AYWB_RS03235	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AYWB_RS03245	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AYWB_RS03250	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
AYWB_RS03255	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AYWB_RS03275	COG1175	transmembrane transport
AYWB_RS03280	COG3842	ATPase activity
AYWB_RS03285	COG0017	Asparaginyl-tRNA synthetase
AYWB_RS03290	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AYWB_RS03315	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AYWB_RS03335	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AYWB_RS03370	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AYWB_RS03400	COG0629	single-stranded DNA binding
AYWB_RS03410	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AYWB_RS03410	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AYWB_RS03415	COG0367	asparagine synthase
AYWB_RS03420	COG1136	(ABC) transporter