locus-tag class description dqs_RS00005 PF00308 Bacterial dnaA protein dqs_RS00005 PF11638 DnaA N-terminal domain dqs_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix dqs_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain dqs_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain dqs_RS00010 PF02767 DNA polymerase III beta subunit, central domain dqs_RS00015 PF00204 DNA gyrase B dqs_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus dqs_RS00015 PF18053 DNA gyrase B subunit insert domain dqs_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS00015 PF01751 Toprim domain dqs_RS00025 PF12161 HsdM N-terminal domain dqs_RS00025 PF02384 N-6 DNA Methylase dqs_RS00035 PF18766 SWI2/SNF2 ATPase dqs_RS00035 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) dqs_RS00035 PF12008 Type I restriction and modification enzyme - subunit R C terminal dqs_RS00110 PF00106 short chain dehydrogenase dqs_RS00115 PF03466 LysR substrate binding domain dqs_RS00115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS00120 PF00849 RNA pseudouridylate synthase dqs_RS00125 PF00258 Flavodoxin dqs_RS00145 PF01965 DJ-1/PfpI family dqs_RS00155 PF03466 LysR substrate binding domain dqs_RS00155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS00160 PF01799 [2Fe-2S] binding domain dqs_RS00160 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS00165 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase dqs_RS00170 PF13478 XdhC Rossmann domain dqs_RS00170 PF02625 XdhC and CoxI family dqs_RS00180 PF01613 Flavin reductase like domain dqs_RS00185 PF16363 GDP-mannose 4,6 dehydratase dqs_RS00190 PF00535 Glycosyl transferase family 2 dqs_RS00190 PF02709 N-terminal domain of galactosyltransferase dqs_RS00200 PF03741 Integral membrane protein TerC family dqs_RS00200 PF03471 Transporter associated domain dqs_RS00205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS00205 PF03466 LysR substrate binding domain dqs_RS00210 PF06779 Uncharacterised MFS-type transporter YbfB dqs_RS00230 PF07044 Protein of unknown function (DUF1329) dqs_RS00250 PF18381 YcaO cyclodehydratase C-terminal domain dqs_RS00250 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding dqs_RS00255 PF12833 Helix-turn-helix domain dqs_RS00255 PF02311 AraC-like ligand binding domain dqs_RS00270 PF03746 LamB/YcsF family dqs_RS00275 PF02626 Carboxyltransferase domain, subdomain A and B dqs_RS00280 PF02682 Carboxyltransferase domain, subdomain C and D dqs_RS00285 PF00561 alpha/beta hydrolase fold dqs_RS00290 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) dqs_RS00295 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) dqs_RS00300 PF10062 Predicted secreted protein (DUF2300) dqs_RS00300 PF08486 Stage II sporulation protein dqs_RS00320 PF00672 HAMP domain dqs_RS00320 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS00320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS00325 PF00486 Transcriptional regulatory protein, C terminal dqs_RS00325 PF00072 Response regulator receiver domain dqs_RS00330 PF00005 ABC transporter dqs_RS00335 PF02687 FtsX-like permease family dqs_RS00335 PF12704 MacB-like periplasmic core domain dqs_RS00350 PF01835 MG2 domain dqs_RS00350 PF07703 Alpha-2-macroglobulin bait region domain dqs_RS00350 PF00207 Alpha-2-macroglobulin family dqs_RS00355 PF06672 Protein of unknown function (DUF1175) dqs_RS00360 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) dqs_RS00375 PF01594 AI-2E family transporter dqs_RS00385 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS00410 PF00158 Sigma-54 interaction domain dqs_RS00410 PF00072 Response regulator receiver domain dqs_RS00410 PF02954 Bacterial regulatory protein, Fis family dqs_RS00415 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS00415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS00425 PF12034 Domain of unknown function (DUF3520) dqs_RS00425 PF00092 von Willebrand factor type A domain dqs_RS00425 PF12450 von Willebrand factor dqs_RS00430 PF04542 Sigma-70 region 2 dqs_RS00430 PF08281 Sigma-70, region 4 dqs_RS00450 PF01139 tRNA-splicing ligase RtcB dqs_RS00455 PF16658 Class II release factor RF3, C-terminal domain dqs_RS00455 PF03144 Elongation factor Tu domain 2 dqs_RS00455 PF00009 Elongation factor Tu GTP binding domain dqs_RS00465 PF04381 Putative exonuclease, RdgC dqs_RS00475 PF00849 RNA pseudouridylate synthase dqs_RS00475 PF01479 S4 domain dqs_RS00485 PF01132 Elongation factor P (EF-P) OB domain dqs_RS00485 PF09285 Elongation factor P, C-terminal dqs_RS00485 PF08207 Elongation factor P (EF-P) KOW-like domain dqs_RS00495 PF00005 ABC transporter dqs_RS00495 PF17755 UvrA DNA-binding domain dqs_RS00495 PF17760 UvrA interaction domain dqs_RS00505 PF01322 Cytochrome C' dqs_RS00510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS00510 PF00672 HAMP domain dqs_RS00510 PF17200 Single Cache domain 2 dqs_RS00515 PF13180 PDZ domain dqs_RS00520 PF00593 TonB dependent receptor dqs_RS00520 PF07715 TonB-dependent Receptor Plug Domain dqs_RS00525 PF03466 LysR substrate binding domain dqs_RS00525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS00530 PF01131 DNA topoisomerase dqs_RS00530 PF01751 Toprim domain dqs_RS00535 PF04361 Protein of unknown function (DUF494) dqs_RS00540 PF17782 DprA winged helix domain dqs_RS00540 PF02481 DNA recombination-mediator protein A dqs_RS00550 PF01327 Polypeptide deformylase dqs_RS00555 PF00551 Formyl transferase dqs_RS00555 PF02911 Formyl transferase, C-terminal domain dqs_RS00560 PF01435 Peptidase family M48 dqs_RS00565 PF08534 Redoxin dqs_RS00570 PF01841 Transglutaminase-like superfamily dqs_RS00580 PF08534 Redoxin dqs_RS00600 PF02580 D-Tyr-tRNA(Tyr) deacylase dqs_RS00605 PF05726 Pirin C-terminal cupin domain dqs_RS00605 PF02678 Pirin dqs_RS00610 PF08240 Alcohol dehydrogenase GroES-like domain dqs_RS00615 PF03466 LysR substrate binding domain dqs_RS00615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS00620 PF02798 Glutathione S-transferase, N-terminal domain dqs_RS00630 PF01575 MaoC like domain dqs_RS00635 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus dqs_RS00635 PF01048 Phosphorylase superfamily dqs_RS00640 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_RS00640 PF00005 ABC transporter dqs_RS00645 PF00005 ABC transporter dqs_RS00655 PF02653 Branched-chain amino acid transport system / permease component dqs_RS00665 PF04055 Radical SAM superfamily dqs_RS00695 PF17200 Single Cache domain 2 dqs_RS00695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS00695 PF00672 HAMP domain dqs_RS00700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS00700 PF17200 Single Cache domain 2 dqs_RS00700 PF00672 HAMP domain dqs_RS00705 PF01361 Tautomerase enzyme dqs_RS00710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS00710 PF03466 LysR substrate binding domain dqs_RS00715 PF01063 Amino-transferase class IV dqs_RS00720 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS00730 PF00072 Response regulator receiver domain dqs_RS00730 PF08448 PAS fold dqs_RS00730 PF13188 PAS domain dqs_RS00730 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS00730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS00735 PF13458 Periplasmic binding protein dqs_RS00740 PF00781 Diacylglycerol kinase catalytic domain dqs_RS00750 PF10442 FIST C domain dqs_RS00750 PF08495 FIST N domain dqs_RS00755 PF01134 Glucose inhibited division protein A dqs_RS00755 PF13932 GidA associated domain dqs_RS00760 PF02527 rRNA small subunit methyltransferase G dqs_RS00765 PF13614 AAA domain dqs_RS00780 PF17762 HTH domain found in ParB protein dqs_RS00780 PF02195 ParB-like nuclease domain dqs_RS00790 PF07690 Major Facilitator Superfamily dqs_RS00795 PF01979 Amidohydrolase family dqs_RS00800 PF01553 Acyltransferase dqs_RS00800 PF00501 AMP-binding enzyme dqs_RS00805 PF01022 Bacterial regulatory protein, arsR family dqs_RS00815 PF00119 ATP synthase A chain dqs_RS00820 PF00137 ATP synthase subunit C dqs_RS00825 PF00430 ATP synthase B/B' CF(0) dqs_RS00830 PF00213 ATP synthase delta (OSCP) subunit dqs_RS00835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain dqs_RS00835 PF00306 ATP synthase alpha/beta chain, C terminal domain dqs_RS00835 PF02874 ATP synthase alpha/beta family, beta-barrel domain dqs_RS00840 PF00231 ATP synthase dqs_RS00845 PF02874 ATP synthase alpha/beta family, beta-barrel domain dqs_RS00845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain dqs_RS00850 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain dqs_RS00850 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain dqs_RS00860 PF01209 ubiE/COQ5 methyltransferase family dqs_RS00870 PF00486 Transcriptional regulatory protein, C terminal dqs_RS00870 PF00072 Response regulator receiver domain dqs_RS00875 PF00989 PAS fold dqs_RS00875 PF11808 Phosphate regulon sensor protein PhoR dqs_RS00875 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS00875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS00890 PF13230 Glutamine amidotransferases class-II dqs_RS00900 PF02637 GatB domain dqs_RS00900 PF02934 GatB/GatE catalytic domain dqs_RS00910 PF01425 Amidase dqs_RS00915 PF02686 Glu-tRNAGln amidotransferase C subunit dqs_RS00935 PF03717 Penicillin-binding Protein dimerisation domain dqs_RS00935 PF00905 Penicillin binding protein transpeptidase domain dqs_RS00940 PF01098 Cell cycle protein dqs_RS00945 PF05036 Sporulation related domain dqs_RS00945 PF03330 Lytic transglycolase dqs_RS00950 PF07943 Penicillin-binding protein 5, C-terminal domain dqs_RS00950 PF00768 D-alanyl-D-alanine carboxypeptidase dqs_RS00955 PF01063 Amino-transferase class IV dqs_RS00960 PF04359 Protein of unknown function (DUF493) dqs_RS00965 PF03099 Biotin/lipoate A/B protein ligase family dqs_RS00970 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family dqs_RS00970 PF04055 Radical SAM superfamily dqs_RS00980 PF13361 UvrD-like helicase C-terminal domain dqs_RS00980 PF00580 UvrD/REP helicase N-terminal domain dqs_RS00985 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_RS01020 PF00106 short chain dehydrogenase dqs_RS01035 PF02558 Ketopantoate reductase PanE/ApbA dqs_RS01035 PF08546 Ketopantoate reductase PanE/ApbA C terminal dqs_RS01040 PF00085 Thioredoxin dqs_RS01065 PF00117 Glutamine amidotransferase class-I dqs_RS01065 PF00425 chorismate binding enzyme dqs_RS01065 PF04715 Anthranilate synthase component I, N terminal region dqs_RS01070 PF00149 Calcineurin-like phosphoesterase dqs_RS01070 PF12320 Type 5 capsule protein repressor C-terminal domain dqs_RS01075 PF13476 AAA domain dqs_RS01095 PF02608 ABC transporter substrate-binding protein PnrA-like dqs_RS01100 PF07687 Peptidase dimerisation domain dqs_RS01100 PF01546 Peptidase family M20/M25/M40 dqs_RS01105 PF12833 Helix-turn-helix domain dqs_RS01105 PF06719 AraC-type transcriptional regulator N-terminus dqs_RS01120 PF01266 FAD dependent oxidoreductase dqs_RS01125 PF04324 BFD-like [2Fe-2S] binding domain dqs_RS01125 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS01135 PF01037 Lrp/AsnC ligand binding domain dqs_RS01140 PF00202 Aminotransferase class-III dqs_RS01150 PF00171 Aldehyde dehydrogenase family dqs_RS01160 PF01266 FAD dependent oxidoreductase dqs_RS01165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle dqs_RS01170 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS01175 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS01180 PF00005 ABC transporter dqs_RS01180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region dqs_RS01185 PF00171 Aldehyde dehydrogenase family dqs_RS01210 PF00873 AcrB/AcrD/AcrF family dqs_RS01220 PF00593 TonB dependent receptor dqs_RS01220 PF07715 TonB-dependent Receptor Plug Domain dqs_RS01235 PF01618 MotA/TolQ/ExbB proton channel family dqs_RS01240 PF02472 Biopolymer transport protein ExbD/TolR dqs_RS01255 PF00962 Adenosine/AMP deaminase dqs_RS01260 PF02146 Sir2 family dqs_RS01275 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_RS01285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_RS01290 PF00440 Bacterial regulatory proteins, tetR family dqs_RS01290 PF13977 BetI-type transcriptional repressor, C-terminal dqs_RS01295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_RS01295 PF00529 HlyD membrane-fusion protein of T1SS dqs_RS01300 PF00873 AcrB/AcrD/AcrF family dqs_RS01305 PF02321 Outer membrane efflux protein dqs_RS01310 PF00210 Ferritin-like domain dqs_RS01315 PF01258 Prokaryotic dksA/traR C4-type zinc finger dqs_RS01320 PF00175 Oxidoreductase NAD-binding domain dqs_RS01320 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS01340 PF01522 Polysaccharide deacetylase dqs_RS01365 PF07977 FabA-like domain dqs_RS01370 PF00501 AMP-binding enzyme dqs_RS01370 PF13193 AMP-binding enzyme C-terminal domain dqs_RS01385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS01385 PF08521 Two-component sensor kinase N-terminal dqs_RS01385 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS01390 PF00486 Transcriptional regulatory protein, C terminal dqs_RS01390 PF00072 Response regulator receiver domain dqs_RS01410 PF00873 AcrB/AcrD/AcrF family dqs_RS01425 PF04055 Radical SAM superfamily dqs_RS01425 PF02310 B12 binding domain dqs_RS01435 PF04542 Sigma-70 region 2 dqs_RS01435 PF08281 Sigma-70, region 4 dqs_RS01435 PF12680 SnoaL-like domain dqs_RS01475 PF13677 Membrane MotB of proton-channel complex MotA/MotB dqs_RS01475 PF00691 OmpA family dqs_RS01495 PF00550 Phosphopantetheine attachment site dqs_RS01515 PF00005 ABC transporter dqs_RS01530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal dqs_RS01530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III dqs_RS01550 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain dqs_RS01550 PF00753 Metallo-beta-lactamase superfamily dqs_RS01550 PF10996 Beta-Casp domain dqs_RS01560 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_RS01565 PF00171 Aldehyde dehydrogenase family dqs_RS01570 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS01575 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain dqs_RS01575 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_RS01575 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_RS01580 PF03061 Thioesterase superfamily dqs_RS01585 PF00501 AMP-binding enzyme dqs_RS01585 PF14535 AMP-binding enzyme C-terminal domain dqs_RS01590 PF05138 Phenylacetic acid catabolic protein dqs_RS01595 PF06243 Phenylacetic acid degradation B dqs_RS01600 PF05138 Phenylacetic acid catabolic protein dqs_RS01605 PF01883 Iron-sulfur cluster assembly protein dqs_RS01610 PF00175 Oxidoreductase NAD-binding domain dqs_RS01610 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS01610 PF00970 Oxidoreductase FAD-binding domain dqs_RS01620 PF02803 Thiolase, C-terminal domain dqs_RS01620 PF00108 Thiolase, N-terminal domain dqs_RS01635 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_RS01635 PF00005 ABC transporter dqs_RS01640 PF00005 ABC transporter dqs_RS01645 PF00216 Bacterial DNA-binding protein dqs_RS01650 PF00270 DEAD/DEAH box helicase dqs_RS01650 PF00271 Helicase conserved C-terminal domain dqs_RS01655 PF01029 NusB family dqs_RS01660 PF00885 6,7-dimethyl-8-ribityllumazine synthase dqs_RS01665 PF00925 GTP cyclohydrolase II dqs_RS01665 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase dqs_RS01670 PF00677 Lumazine binding domain dqs_RS01675 PF02683 Cytochrome C biogenesis protein transmembrane region dqs_RS01675 PF11412 Disulphide bond corrector protein DsbC dqs_RS01680 PF03091 CutA1 divalent ion tolerance protein dqs_RS01685 PF03060 Nitronate monooxygenase dqs_RS01690 PF09350 Domain of unknown function (DUF1992) dqs_RS01705 PF00440 Bacterial regulatory proteins, tetR family dqs_RS01720 PF03466 LysR substrate binding domain dqs_RS01720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS01745 PF00563 EAL domain dqs_RS01745 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS01745 PF00498 FHA domain dqs_RS01750 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS01750 PF08448 PAS fold dqs_RS01760 PF12849 PBP superfamily domain dqs_RS01770 PF01322 Cytochrome C' dqs_RS01775 PF00797 N-acetyltransferase dqs_RS01780 PF13614 AAA domain dqs_RS01790 PF00580 UvrD/REP helicase N-terminal domain dqs_RS01790 PF13361 UvrD-like helicase C-terminal domain dqs_RS01795 PF00999 Sodium/hydrogen exchanger family dqs_RS01810 PF01061 ABC-2 type transporter dqs_RS01830 PF08378 Nuclease-related domain dqs_RS01835 PF00005 ABC transporter dqs_RS01840 PF00043 Glutathione S-transferase, C-terminal domain dqs_RS01840 PF13417 Glutathione S-transferase, N-terminal domain dqs_RS01865 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_RS01880 PF00266 Aminotransferase class-V dqs_RS01885 PF01169 Uncharacterized protein family UPF0016 dqs_RS01895 PF02036 SCP-2 sterol transfer family dqs_RS01900 PF01136 Peptidase family U32 dqs_RS01905 PF01136 Peptidase family U32 dqs_RS01910 PF00474 Sodium:solute symporter family dqs_RS01915 PF00202 Aminotransferase class-III dqs_RS01920 PF03109 ABC1 family dqs_RS01925 PF00593 TonB dependent receptor dqs_RS01925 PF07715 TonB-dependent Receptor Plug Domain dqs_RS01935 PF03485 Arginyl tRNA synthetase N terminal domain dqs_RS01935 PF05746 DALR anticodon binding domain dqs_RS01935 PF00750 tRNA synthetases class I (R) dqs_RS01945 PF13462 Thioredoxin dqs_RS01950 PF00106 short chain dehydrogenase dqs_RS01975 PF00561 alpha/beta hydrolase fold dqs_RS01975 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus dqs_RS01985 PF13411 MerR HTH family regulatory protein dqs_RS01995 PF00108 Thiolase, N-terminal domain dqs_RS01995 PF02803 Thiolase, C-terminal domain dqs_RS02000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_RS02000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_RS02000 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_RS02005 PF01323 DSBA-like thioredoxin domain dqs_RS02015 PF00753 Metallo-beta-lactamase superfamily dqs_RS02015 PF16123 Hydroxyacylglutathione hydrolase C-terminus dqs_RS02020 PF03668 P-loop ATPase protein family dqs_RS02035 PF00072 Response regulator receiver domain dqs_RS02035 PF01339 CheB methylesterase dqs_RS02040 PF03705 CheR methyltransferase, all-alpha domain dqs_RS02040 PF01739 CheR methyltransferase, SAM binding domain dqs_RS02045 PF03975 CheD chemotactic sensory transduction dqs_RS02050 PF01584 CheW-like domain dqs_RS02055 PF00672 HAMP domain dqs_RS02055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS02060 PF01627 Hpt domain dqs_RS02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS02060 PF02895 Signal transducing histidine kinase, homodimeric domain dqs_RS02060 PF01584 CheW-like domain dqs_RS02070 PF12729 Four helix bundle sensory module for signal transduction dqs_RS02070 PF00672 HAMP domain dqs_RS02070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS02075 PF00072 Response regulator receiver domain dqs_RS02090 PF06508 Queuosine biosynthesis protein QueC dqs_RS02095 PF04055 Radical SAM superfamily dqs_RS02105 PF00691 OmpA family dqs_RS02110 PF04052 TolB amino-terminal domain dqs_RS02110 PF07676 WD40-like Beta Propeller Repeat dqs_RS02120 PF02472 Biopolymer transport protein ExbD/TolR dqs_RS02125 PF01618 MotA/TolQ/ExbB proton channel family dqs_RS02130 PF03061 Thioesterase superfamily dqs_RS02140 PF00227 Proteasome subunit dqs_RS02145 PF07724 AAA domain (Cdc48 subfamily) dqs_RS02145 PF00004 ATPase family associated with various cellular activities (AAA) dqs_RS02155 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS02155 PF03707 Bacterial signalling protein N terminal repeat dqs_RS02155 PF00563 EAL domain dqs_RS02160 PF01479 S4 domain dqs_RS02165 PF00009 Elongation factor Tu GTP binding domain dqs_RS02170 PF01507 Phosphoadenosine phosphosulfate reductase family dqs_RS02175 PF01507 Phosphoadenosine phosphosulfate reductase family dqs_RS02190 PF01925 Sulfite exporter TauE/SafE dqs_RS02195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS02195 PF03466 LysR substrate binding domain dqs_RS02205 PF00710 Asparaginase, N-terminal dqs_RS02205 PF17763 Glutaminase/Asparaginase C-terminal domain dqs_RS02210 PF10415 Fumarase C C-terminus dqs_RS02210 PF00206 Lyase dqs_RS02215 PF17763 Glutaminase/Asparaginase C-terminal domain dqs_RS02215 PF00710 Asparaginase, N-terminal dqs_RS02220 PF00005 ABC transporter dqs_RS02225 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS02230 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS02235 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_RS02245 PF04679 ATP dependent DNA ligase C terminal region dqs_RS02245 PF04675 DNA ligase N terminus dqs_RS02245 PF01068 ATP dependent DNA ligase domain dqs_RS02250 PF00271 Helicase conserved C-terminal domain dqs_RS02250 PF08494 DEAD/H associated dqs_RS02250 PF00270 DEAD/DEAH box helicase dqs_RS02260 PF00158 Sigma-54 interaction domain dqs_RS02260 PF00072 Response regulator receiver domain dqs_RS02260 PF02954 Bacterial regulatory protein, Fis family dqs_RS02265 PF02743 Cache domain dqs_RS02265 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS02265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS02270 PF02254 TrkA-N domain dqs_RS02270 PF00999 Sodium/hydrogen exchanger family dqs_RS02275 PF00563 EAL domain dqs_RS02275 PF08448 PAS fold dqs_RS02275 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS02275 PF08447 PAS fold dqs_RS02285 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS02290 PF00005 ABC transporter dqs_RS02290 PF00664 ABC transporter transmembrane region dqs_RS02300 PF07683 Cobalamin synthesis protein cobW C-terminal domain dqs_RS02300 PF02492 CobW/HypB/UreG, nucleotide-binding domain dqs_RS02310 PF00486 Transcriptional regulatory protein, C terminal dqs_RS02310 PF00072 Response regulator receiver domain dqs_RS02315 PF00989 PAS fold dqs_RS02315 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS02315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS02320 PF00909 Ammonium Transporter Family dqs_RS02340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_RS02340 PF09317 Domain of unknown function (DUF1974) dqs_RS02340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_RS02345 PF02803 Thiolase, C-terminal domain dqs_RS02345 PF00108 Thiolase, N-terminal domain dqs_RS02350 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_RS02350 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_RS02350 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS02355 PF03061 Thioesterase superfamily dqs_RS02360 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) dqs_RS02365 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_RS02365 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS02365 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_RS02370 PF00108 Thiolase, N-terminal domain dqs_RS02370 PF02803 Thiolase, C-terminal domain dqs_RS02375 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS02385 PF01053 Cys/Met metabolism PLP-dependent enzyme dqs_RS02400 PF02623 FliW protein dqs_RS02405 PF01042 Endoribonuclease L-PSP dqs_RS02410 PF00271 Helicase conserved C-terminal domain dqs_RS02410 PF00270 DEAD/DEAH box helicase dqs_RS02410 PF17191 RecG wedge domain dqs_RS02415 PF04345 Chorismate lyase dqs_RS02420 PF01040 UbiA prenyltransferase family dqs_RS02430 PF01042 Endoribonuclease L-PSP dqs_RS02435 PF09335 SNARE associated Golgi protein dqs_RS02440 PF07769 psiF repeat dqs_RS02450 PF01171 PP-loop family dqs_RS02455 PF00106 short chain dehydrogenase dqs_RS02475 PF00043 Glutathione S-transferase, C-terminal domain dqs_RS02475 PF02798 Glutathione S-transferase, N-terminal domain dqs_RS02485 PF01966 HD domain dqs_RS02485 PF12627 Probable RNA and SrmB- binding site of polymerase A dqs_RS02485 PF01743 Poly A polymerase head domain dqs_RS02500 PF14718 Soluble lytic murein transglycosylase L domain dqs_RS02500 PF01464 Transglycosylase SLT domain dqs_RS02505 PF01812 5-formyltetrahydrofolate cyclo-ligase family dqs_RS02510 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS02520 PF00291 Pyridoxal-phosphate dependent enzyme dqs_RS02520 PF00585 C-terminal regulatory domain of Threonine dehydratase dqs_RS02525 PF07475 HPr Serine kinase C-terminal domain dqs_RS02525 PF02603 HPr Serine kinase N terminus dqs_RS02530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 dqs_RS02535 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein dqs_RS02540 PF04552 Sigma-54, DNA binding domain dqs_RS02540 PF04963 Sigma-54 factor, core binding domain dqs_RS02540 PF00309 Sigma-54 factor, Activator interacting domain (AID) dqs_RS02545 PF00005 ABC transporter dqs_RS02550 PF02631 RecX family dqs_RS02555 PF00154 recA bacterial DNA recombination protein dqs_RS02560 PF02464 Competence-damaged protein dqs_RS02565 PF04608 Phosphatidylglycerophosphatase A dqs_RS02570 PF02769 AIR synthase related protein, C-terminal domain dqs_RS02570 PF00586 AIR synthase related protein, N-terminal domain dqs_RS02575 PF03658 RnfH family Ubiquitin dqs_RS02580 PF02508 Rnf-Nqr subunit, membrane protein dqs_RS02585 PF04205 FMN-binding domain dqs_RS02590 PF03116 NQR2, RnfD, RnfE family dqs_RS02595 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit dqs_RS02595 PF13375 RnfC Barrel sandwich hybrid domain dqs_RS02595 PF10531 SLBB domain dqs_RS02595 PF13237 4Fe-4S dicluster domain dqs_RS02600 PF04060 Putative Fe-S cluster dqs_RS02605 PF02508 Rnf-Nqr subunit, membrane protein dqs_RS02610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS02610 PF00989 PAS fold dqs_RS02615 PF00158 Sigma-54 interaction domain dqs_RS02615 PF13185 GAF domain dqs_RS02615 PF02954 Bacterial regulatory protein, Fis family dqs_RS02630 PF00080 Copper/zinc superoxide dismutase (SODC) dqs_RS02635 PF04055 Radical SAM superfamily dqs_RS02635 PF02579 Dinitrogenase iron-molybdenum cofactor dqs_RS02640 PF00037 4Fe-4S binding domain dqs_RS02650 PF00753 Metallo-beta-lactamase superfamily dqs_RS02650 PF00258 Flavodoxin dqs_RS02655 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS02660 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS02665 PF04891 NifQ dqs_RS02670 PF03747 ADP-ribosylglycohydrolase dqs_RS02685 PF09997 Predicted membrane protein (DUF2238) dqs_RS02705 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) dqs_RS02710 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family dqs_RS02715 PF00148 Nitrogenase component 1 type Oxidoreductase dqs_RS02720 PF00148 Nitrogenase component 1 type Oxidoreductase dqs_RS02720 PF11844 Domain of unknown function (DUF3364) dqs_RS02725 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family dqs_RS02725 PF06988 NifT/FixU protein dqs_RS02730 PF00037 4Fe-4S binding domain dqs_RS02735 PF02579 Dinitrogenase iron-molybdenum cofactor dqs_RS02735 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal dqs_RS02745 PF00672 HAMP domain dqs_RS02745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS02745 PF17200 Single Cache domain 2 dqs_RS02750 PF00639 PPIC-type PPIASE domain dqs_RS02755 PF04319 NifZ domain dqs_RS02760 PF03206 Nitrogen fixation protein NifW dqs_RS02770 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_RS02775 PF00682 HMGL-like dqs_RS02780 PF00266 Aminotransferase class-V dqs_RS02785 PF04324 BFD-like [2Fe-2S] binding domain dqs_RS02785 PF01106 NifU-like domain dqs_RS02785 PF01592 NifU-like N terminal domain dqs_RS02790 PF01521 Iron-sulphur cluster biosynthesis dqs_RS02800 PF12838 4Fe-4S dicluster domain dqs_RS02810 PF03270 Protein of unknown function, DUF269 dqs_RS02820 PF02579 Dinitrogenase iron-molybdenum cofactor dqs_RS02825 PF00148 Nitrogenase component 1 type Oxidoreductase dqs_RS02830 PF00148 Nitrogenase component 1 type Oxidoreductase dqs_RS02845 PF03707 Bacterial signalling protein N terminal repeat dqs_RS02845 PF00563 EAL domain dqs_RS02845 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS02860 PF17200 Single Cache domain 2 dqs_RS02860 PF07730 Histidine kinase dqs_RS02865 PF00196 Bacterial regulatory proteins, luxR family dqs_RS02865 PF00072 Response regulator receiver domain dqs_RS02935 PF00216 Bacterial DNA-binding protein dqs_RS03045 PF06074 Protein of unknown function (DUF935) dqs_RS03050 PF04233 Phage Mu protein F like protein dqs_RS03160 PF02075 Crossover junction endodeoxyribonuclease RuvC dqs_RS03165 PF01906 Putative heavy-metal-binding dqs_RS03175 PF01709 Transcriptional regulator dqs_RS03185 PF05872 Bacterial protein of unknown function (DUF853) dqs_RS03190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS03190 PF03466 LysR substrate binding domain dqs_RS03195 PF07690 Major Facilitator Superfamily dqs_RS03200 PF00892 EamA-like transporter family dqs_RS03205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS03205 PF00672 HAMP domain dqs_RS03205 PF02743 Cache domain dqs_RS03210 PF07690 Major Facilitator Superfamily dqs_RS03215 PF07690 Major Facilitator Superfamily dqs_RS03220 PF03466 LysR substrate binding domain dqs_RS03220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS03225 PF02219 Methylenetetrahydrofolate reductase dqs_RS03230 PF01479 S4 domain dqs_RS03230 PF01728 FtsJ-like methyltransferase dqs_RS03235 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain dqs_RS03235 PF05221 S-adenosyl-L-homocysteine hydrolase dqs_RS03245 PF00438 S-adenosylmethionine synthetase, N-terminal domain dqs_RS03245 PF02772 S-adenosylmethionine synthetase, central domain dqs_RS03245 PF02773 S-adenosylmethionine synthetase, C-terminal domain dqs_RS03255 PF03279 Bacterial lipid A biosynthesis acyltransferase dqs_RS03265 PF01678 Diaminopimelate epimerase dqs_RS03275 PF02899 Phage integrase, N-terminal SAM-like domain dqs_RS03275 PF00589 Phage integrase family dqs_RS03285 PF10672 S-adenosylmethionine-dependent methyltransferase dqs_RS03285 PF17785 PUA-like domain dqs_RS03300 PF05496 Holliday junction DNA helicase RuvB P-loop domain dqs_RS03300 PF05491 RuvB C-terminal winged helix domain dqs_RS03300 PF17864 RuvB AAA lid domain dqs_RS03305 PF01330 RuvA N terminal domain dqs_RS03305 PF07499 RuvA, C-terminal domain dqs_RS03325 PF07664 Ferrous iron transport protein B C terminus dqs_RS03325 PF17910 FeoB cytosolic helical domain dqs_RS03325 PF07670 Nucleoside recognition dqs_RS03325 PF02421 Ferrous iron transport protein B dqs_RS03330 PF07715 TonB-dependent Receptor Plug Domain dqs_RS03330 PF00593 TonB dependent receptor dqs_RS03335 PF13640 2OG-Fe(II) oxygenase superfamily dqs_RS03335 PF18331 PKHD-type hydroxylase C-terminal domain dqs_RS03340 PF01070 FMN-dependent dehydrogenase dqs_RS03345 PF02321 Outer membrane efflux protein dqs_RS03350 PF12704 MacB-like periplasmic core domain dqs_RS03350 PF00005 ABC transporter dqs_RS03350 PF02687 FtsX-like permease family dqs_RS03355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_RS03360 PF02472 Biopolymer transport protein ExbD/TolR dqs_RS03365 PF01618 MotA/TolQ/ExbB proton channel family dqs_RS03370 PF03544 Gram-negative bacterial TonB protein C-terminal dqs_RS03375 PF00210 Ferritin-like domain dqs_RS03380 PF04324 BFD-like [2Fe-2S] binding domain dqs_RS03385 PF01557 Fumarylacetoacetate (FAA) hydrolase family dqs_RS03400 PF08447 PAS fold dqs_RS03400 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS03400 PF00563 EAL domain dqs_RS03400 PF08448 PAS fold dqs_RS03420 PF01790 Prolipoprotein diacylglyceryl transferase dqs_RS03425 PF04337 Protein of unknown function, DUF480 dqs_RS03430 PF00211 Adenylate and Guanylate cyclase catalytic domain dqs_RS03445 PF02743 Cache domain dqs_RS03445 PF00211 Adenylate and Guanylate cyclase catalytic domain dqs_RS03445 PF00672 HAMP domain dqs_RS03450 PF00920 Dehydratase family dqs_RS03460 PF05164 Cell division protein ZapA dqs_RS03480 PF13183 4Fe-4S dicluster domain dqs_RS03480 PF02754 Cysteine-rich domain dqs_RS03490 PF01297 Zinc-uptake complex component A periplasmic dqs_RS03495 PF00950 ABC 3 transport family dqs_RS03500 PF00005 ABC transporter dqs_RS03505 PF01475 Ferric uptake regulator family dqs_RS03510 PF07238 PilZ domain dqs_RS03515 PF00664 ABC transporter transmembrane region dqs_RS03515 PF00005 ABC transporter dqs_RS03515 PF03412 Peptidase C39 family dqs_RS03520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_RS03520 PF00529 HlyD membrane-fusion protein of T1SS dqs_RS03525 PF00196 Bacterial regulatory proteins, luxR family dqs_RS03525 PF00072 Response regulator receiver domain dqs_RS03545 PF01590 GAF domain dqs_RS03545 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS03545 PF00360 Phytochrome region dqs_RS03545 PF00563 EAL domain dqs_RS03555 PF02321 Outer membrane efflux protein dqs_RS03560 PF00072 Response regulator receiver domain dqs_RS03560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS03560 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS03560 PF09308 LuxQ, periplasmic dqs_RS03565 PF00072 Response regulator receiver domain dqs_RS03580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain dqs_RS03580 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS03585 PF00005 ABC transporter dqs_RS03585 PF00664 ABC transporter transmembrane region dqs_RS03590 PF01863 Protein of unknown function DUF45 dqs_RS03600 PF01066 CDP-alcohol phosphatidyltransferase dqs_RS03605 PF12147 Putative methyltransferase dqs_RS03605 PF12146 Serine aminopeptidase, S33 dqs_RS03610 PF00782 Dual specificity phosphatase, catalytic domain dqs_RS03620 PF01553 Acyltransferase dqs_RS03630 PF03264 NapC/NirT cytochrome c family, N-terminal region dqs_RS03635 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) dqs_RS03640 PF01568 Molydopterin dinucleotide binding domain dqs_RS03640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_RS03640 PF00384 Molybdopterin oxidoreductase dqs_RS03650 PF06796 Periplasmic nitrate reductase protein NapE dqs_RS03660 PF02653 Branched-chain amino acid transport system / permease component dqs_RS03665 PF02653 Branched-chain amino acid transport system / permease component dqs_RS03670 PF00005 ABC transporter dqs_RS03670 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_RS03675 PF00005 ABC transporter dqs_RS03680 PF03466 LysR substrate binding domain dqs_RS03680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS03685 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS03690 PF04341 Protein of unknown function, DUF485 dqs_RS03695 PF00474 Sodium:solute symporter family dqs_RS03700 PF01595 Cyclin M transmembrane N-terminal domain dqs_RS03700 PF03471 Transporter associated domain dqs_RS03700 PF00571 CBS domain dqs_RS03705 PF07729 FCD domain dqs_RS03705 PF00392 Bacterial regulatory proteins, gntR family dqs_RS03710 PF02310 B12 binding domain dqs_RS03710 PF01642 Methylmalonyl-CoA mutase dqs_RS03720 PF01039 Carboxyl transferase domain dqs_RS03725 PF18140 Propionyl-coenzyme A carboxylase BT domain dqs_RS03725 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain dqs_RS03725 PF00364 Biotin-requiring enzyme dqs_RS03725 PF00289 Biotin carboxylase, N-terminal domain dqs_RS03725 PF02785 Biotin carboxylase C-terminal domain dqs_RS03730 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS03730 PF03707 Bacterial signalling protein N terminal repeat dqs_RS03730 PF00563 EAL domain dqs_RS03735 PF03707 Bacterial signalling protein N terminal repeat dqs_RS03735 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS03735 PF00563 EAL domain dqs_RS03740 PF04228 Putative neutral zinc metallopeptidase dqs_RS03750 PF00486 Transcriptional regulatory protein, C terminal dqs_RS03750 PF00072 Response regulator receiver domain dqs_RS03755 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS03755 PF08448 PAS fold dqs_RS03755 PF13188 PAS domain dqs_RS03755 PF00072 Response regulator receiver domain dqs_RS03755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS03760 PF12833 Helix-turn-helix domain dqs_RS03760 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term dqs_RS03765 PF02310 B12 binding domain dqs_RS03765 PF01642 Methylmalonyl-CoA mutase dqs_RS03770 PF00206 Lyase dqs_RS03770 PF10415 Fumarase C C-terminus dqs_RS03780 PF03781 Sulfatase-modifying factor enzyme 1 dqs_RS03780 PF12867 DinB superfamily dqs_RS03785 PF00933 Glycosyl hydrolase family 3 N terminal domain dqs_RS03790 PF06123 Inner membrane protein CreD dqs_RS03795 PF00672 HAMP domain dqs_RS03795 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS03795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS03800 PF00072 Response regulator receiver domain dqs_RS03800 PF00486 Transcriptional regulatory protein, C terminal dqs_RS03805 PF03448 MgtE intracellular N domain dqs_RS03805 PF01769 Divalent cation transporter dqs_RS03805 PF00571 CBS domain dqs_RS03810 PF00912 Transglycosylase dqs_RS03815 PF01488 Shikimate / quinate 5-dehydrogenase dqs_RS03815 PF08501 Shikimate dehydrogenase substrate binding domain dqs_RS03815 PF18317 Shikimate 5'-dehydrogenase C-terminal domain dqs_RS03825 PF00773 RNB domain dqs_RS03830 PF13847 Methyltransferase domain dqs_RS03830 PF03551 Transcriptional regulator PadR-like family dqs_RS03835 PF05728 Uncharacterised protein family (UPF0227) dqs_RS03840 PF02673 Bacitracin resistance protein BacA dqs_RS03845 PF03692 Putative zinc- or iron-chelating domain dqs_RS03860 PF00270 DEAD/DEAH box helicase dqs_RS03860 PF11898 Domain of unknown function (DUF3418) dqs_RS03860 PF04408 Helicase associated domain (HA2) dqs_RS03860 PF00271 Helicase conserved C-terminal domain dqs_RS03860 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold dqs_RS03870 PF01250 Ribosomal protein S6 dqs_RS03880 PF01084 Ribosomal protein S18 dqs_RS03885 PF03948 Ribosomal protein L9, C-terminal domain dqs_RS03885 PF01281 Ribosomal protein L9, N-terminal domain dqs_RS03890 PF00772 DnaB-like helicase N terminal domain dqs_RS03890 PF03796 DnaB-like helicase C terminal domain dqs_RS03920 PF01494 FAD binding domain dqs_RS03925 PF13098 Thioredoxin-like domain dqs_RS03925 PF10411 Disulfide bond isomerase protein N-terminus dqs_RS03930 PF03562 MltA specific insert domain dqs_RS03930 PF06725 3D domain dqs_RS03940 PF00293 NUDIX domain dqs_RS03945 PF03884 DNA gyrase inhibitor YacG dqs_RS03950 PF07072 Cell division protein dqs_RS03955 PF01121 Dephospho-CoA kinase dqs_RS03965 PF03309 Type III pantothenate kinase dqs_RS03970 PF03099 Biotin/lipoate A/B protein ligase family dqs_RS03970 PF02237 Biotin protein ligase C terminal domain dqs_RS03975 PF02954 Bacterial regulatory protein, Fis family dqs_RS03975 PF00072 Response regulator receiver domain dqs_RS03975 PF00158 Sigma-54 interaction domain dqs_RS03980 PF00989 PAS fold dqs_RS03980 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS03980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS03990 PF00120 Glutamine synthetase, catalytic domain dqs_RS03990 PF03951 Glutamine synthetase, beta-Grasp domain dqs_RS03995 PF01545 Cation efflux family dqs_RS03995 PF16916 Dimerisation domain of Zinc Transporter dqs_RS04005 PF02445 Quinolinate synthetase A protein dqs_RS04010 PF03372 Endonuclease/Exonuclease/phosphatase family dqs_RS04015 PF13091 PLD-like domain dqs_RS04020 PF13380 CoA binding domain dqs_RS04025 PF00749 tRNA synthetases class I (E and Q), catalytic domain dqs_RS04045 PF00535 Glycosyl transferase family 2 dqs_RS04060 PF01926 50S ribosome-binding GTPase dqs_RS04060 PF06071 Protein of unknown function (DUF933) dqs_RS04065 PF01195 Peptidyl-tRNA hydrolase dqs_RS04070 PF14693 Ribosomal protein TL5, C-terminal domain dqs_RS04070 PF01386 Ribosomal L25p family dqs_RS04075 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase dqs_RS04075 PF14572 Phosphoribosyl synthetase-associated domain dqs_RS04085 PF00288 GHMP kinases N terminal domain dqs_RS04085 PF08544 GHMP kinases C terminal dqs_RS04090 PF03550 Outer membrane lipoprotein LolB dqs_RS04100 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain dqs_RS04100 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain dqs_RS04100 PF06827 Zinc finger found in FPG and IleRS dqs_RS04105 PF00350 Dynamin family dqs_RS04110 PF00037 4Fe-4S binding domain dqs_RS04115 PF01467 Cytidylyltransferase-like dqs_RS04125 PF05193 Peptidase M16 inactive domain dqs_RS04125 PF00675 Insulinase (Peptidase family M16) dqs_RS04130 PF05193 Peptidase M16 inactive domain dqs_RS04130 PF00675 Insulinase (Peptidase family M16) dqs_RS04135 PF00448 SRP54-type protein, GTPase domain dqs_RS04135 PF02881 SRP54-type protein, helical bundle domain dqs_RS04140 PF00005 ABC transporter dqs_RS04145 PF18075 FtsX extracellular domain dqs_RS04150 PF00578 AhpC/TSA family dqs_RS04150 PF10417 C-terminal domain of 1-Cys peroxiredoxin dqs_RS04155 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS04155 PF13192 Thioredoxin domain dqs_RS04170 PF04055 Radical SAM superfamily dqs_RS04170 PF01938 TRAM domain dqs_RS04170 PF00919 Uncharacterized protein family UPF0004 dqs_RS04175 PF02562 PhoH-like protein dqs_RS04180 PF02130 Uncharacterized protein family UPF0054 dqs_RS04185 PF03471 Transporter associated domain dqs_RS04185 PF00571 CBS domain dqs_RS04190 PF00795 Carbon-nitrogen hydrolase dqs_RS04200 PF00873 AcrB/AcrD/AcrF family dqs_RS04205 PF02091 Glycyl-tRNA synthetase alpha subunit dqs_RS04210 PF05746 DALR anticodon binding domain dqs_RS04210 PF02092 Glycyl-tRNA synthetase beta subunit dqs_RS04220 PF01553 Acyltransferase dqs_RS04230 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS04235 PF03968 OstA-like protein dqs_RS04250 PF01380 SIS domain dqs_RS04250 PF00571 CBS domain dqs_RS04255 PF02080 TrkA-C domain dqs_RS04255 PF00999 Sodium/hydrogen exchanger family dqs_RS04255 PF02254 TrkA-N domain dqs_RS04290 PF00482 Type II secretion system (T2SS), protein F dqs_RS04295 PF00437 Type II/IV secretion system protein dqs_RS04295 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain dqs_RS04305 PF00263 Bacterial type II and III secretion system protein dqs_RS04305 PF03958 Bacterial type II/III secretion system short domain dqs_RS04310 PF00005 ABC transporter dqs_RS04315 PF02405 Permease MlaE dqs_RS04320 PF02470 MlaD protein dqs_RS04325 PF04333 MlaA lipoprotein dqs_RS04340 PF00005 ABC transporter dqs_RS04345 PF01061 ABC-2 type transporter dqs_RS04355 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) dqs_RS04360 PF01272 Transcription elongation factor, GreA/GreB, C-term dqs_RS04360 PF14760 Rnk N-terminus dqs_RS04365 PF01634 ATP phosphoribosyltransferase dqs_RS04370 PF00815 Histidinol dehydrogenase dqs_RS04375 PF00155 Aminotransferase class I and II dqs_RS04380 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain dqs_RS04380 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain dqs_RS04385 PF03949 Malic enzyme, NAD binding domain dqs_RS04385 PF00390 Malic enzyme, N-terminal domain dqs_RS04385 PF01515 Phosphate acetyl/butaryl transferase dqs_RS04395 PF00768 D-alanyl-D-alanine carboxypeptidase dqs_RS04400 PF09339 IclR helix-turn-helix domain dqs_RS04400 PF01614 Bacterial transcriptional regulator dqs_RS04405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain dqs_RS04405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain dqs_RS04415 PF01479 S4 domain dqs_RS04415 PF00849 RNA pseudouridylate synthase dqs_RS04420 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit dqs_RS04440 PF00005 ABC transporter dqs_RS04440 PF02687 FtsX-like permease family dqs_RS04440 PF12704 MacB-like periplasmic core domain dqs_RS04445 PF00005 ABC transporter dqs_RS04445 PF02687 FtsX-like permease family dqs_RS04445 PF12704 MacB-like periplasmic core domain dqs_RS04450 PF12704 MacB-like periplasmic core domain dqs_RS04450 PF02687 FtsX-like permease family dqs_RS04450 PF00005 ABC transporter dqs_RS04460 PF00749 tRNA synthetases class I (E and Q), catalytic domain dqs_RS04460 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain dqs_RS04465 PF02537 CrcB-like protein, Camphor Resistance (CrcB) dqs_RS04470 PF00691 OmpA family dqs_RS04475 PF00176 SNF2 family N-terminal domain dqs_RS04475 PF12419 SNF2 Helicase protein dqs_RS04475 PF00271 Helicase conserved C-terminal domain dqs_RS04480 PF13667 ThiC-associated domain dqs_RS04480 PF01964 Radical SAM ThiC family dqs_RS04485 PF08543 Phosphomethylpyrimidine kinase dqs_RS04490 PF00194 Eukaryotic-type carbonic anhydrase dqs_RS04495 PF00392 Bacterial regulatory proteins, gntR family dqs_RS04495 PF00155 Aminotransferase class I and II dqs_RS04505 PF00440 Bacterial regulatory proteins, tetR family dqs_RS04515 PF00873 AcrB/AcrD/AcrF family dqs_RS04525 PF01206 Sulfurtransferase TusA dqs_RS04525 PF00581 Rhodanese-like domain dqs_RS04530 PF02321 Outer membrane efflux protein dqs_RS04535 PF00534 Glycosyl transferases group 1 dqs_RS04535 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) dqs_RS04540 PF01370 NAD dependent epimerase/dehydratase family dqs_RS04545 PF00149 Calcineurin-like phosphoesterase dqs_RS04550 PF01553 Acyltransferase dqs_RS04560 PF00534 Glycosyl transferases group 1 dqs_RS04560 PF13439 Glycosyltransferase Family 4 dqs_RS04565 PF00294 pfkB family carbohydrate kinase dqs_RS04575 PF01219 Prokaryotic diacylglycerol kinase dqs_RS04590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain dqs_RS04590 PF00289 Biotin carboxylase, N-terminal domain dqs_RS04590 PF02785 Biotin carboxylase C-terminal domain dqs_RS04595 PF00364 Biotin-requiring enzyme dqs_RS04600 PF01220 Dehydroquinase class II dqs_RS04605 PF00578 AhpC/TSA family dqs_RS04615 PF08245 Mur ligase middle domain dqs_RS04615 PF02875 Mur ligase family, glutamate ligase domain dqs_RS04615 PF01225 Mur ligase family, catalytic domain dqs_RS04620 PF04972 BON domain dqs_RS04625 PF13580 SIS domain dqs_RS04630 PF02021 Uncharacterised protein family UPF0102 dqs_RS04635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_RS04640 PF01979 Amidohydrolase family dqs_RS04655 PF02381 MraZ protein, putative antitoxin-like dqs_RS04660 PF01795 MraW methylase family dqs_RS04670 PF03717 Penicillin-binding Protein dimerisation domain dqs_RS04670 PF00905 Penicillin binding protein transpeptidase domain dqs_RS04675 PF08245 Mur ligase middle domain dqs_RS04675 PF01225 Mur ligase family, catalytic domain dqs_RS04675 PF02875 Mur ligase family, glutamate ligase domain dqs_RS04680 PF08245 Mur ligase middle domain dqs_RS04680 PF01225 Mur ligase family, catalytic domain dqs_RS04680 PF02875 Mur ligase family, glutamate ligase domain dqs_RS04685 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 dqs_RS04685 PF00953 Glycosyl transferase family 4 dqs_RS04690 PF08245 Mur ligase middle domain dqs_RS04695 PF01098 Cell cycle protein dqs_RS04700 PF03033 Glycosyltransferase family 28 N-terminal domain dqs_RS04700 PF04101 Glycosyltransferase family 28 C-terminal domain dqs_RS04705 PF02875 Mur ligase family, glutamate ligase domain dqs_RS04705 PF01225 Mur ligase family, catalytic domain dqs_RS04705 PF08245 Mur ligase middle domain dqs_RS04710 PF07478 D-ala D-ala ligase C-terminus dqs_RS04710 PF01820 D-ala D-ala ligase N-terminus dqs_RS04715 PF08478 POTRA domain, FtsQ-type dqs_RS04715 PF03799 Cell division protein FtsQ dqs_RS04720 PF02491 SHS2 domain inserted in FTSA dqs_RS04725 PF12327 FtsZ family, C-terminal domain dqs_RS04725 PF00091 Tubulin/FtsZ family, GTPase domain dqs_RS04730 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase dqs_RS04745 PF07517 SecA DEAD-like domain dqs_RS04745 PF01043 SecA preprotein cross-linking domain dqs_RS04745 PF07516 SecA Wing and Scaffold domain dqs_RS04745 PF02810 SEC-C motif dqs_RS04755 PF01960 ArgJ family dqs_RS04770 PF00069 Protein kinase domain dqs_RS04770 PF03793 PASTA domain dqs_RS04780 PF04379 ApaG domain dqs_RS04785 PF00206 Lyase dqs_RS04785 PF08328 Adenylosuccinate lyase C-terminal dqs_RS04795 PF07549 SecD/SecF GG Motif dqs_RS04795 PF02355 Protein export membrane protein dqs_RS04800 PF07549 SecD/SecF GG Motif dqs_RS04800 PF13721 SecD export protein N-terminal TM region dqs_RS04800 PF02355 Protein export membrane protein dqs_RS04805 PF02699 Preprotein translocase subunit dqs_RS04815 PF01702 Queuine tRNA-ribosyltransferase dqs_RS04820 PF02547 Queuosine biosynthesis protein dqs_RS04830 PF03466 LysR substrate binding domain dqs_RS04830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS04840 PF01027 Inhibitor of apoptosis-promoting Bax1 dqs_RS04845 PF00999 Sodium/hydrogen exchanger family dqs_RS04845 PF02254 TrkA-N domain dqs_RS04850 PF01595 Cyclin M transmembrane N-terminal domain dqs_RS04850 PF00571 CBS domain dqs_RS04850 PF03471 Transporter associated domain dqs_RS04855 PF03741 Integral membrane protein TerC family dqs_RS04860 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit dqs_RS04865 PF01171 PP-loop family dqs_RS04865 PF09179 TilS substrate binding domain dqs_RS04865 PF11734 TilS substrate C-terminal domain dqs_RS04870 PF00072 Response regulator receiver domain dqs_RS04870 PF00196 Bacterial regulatory proteins, luxR family dqs_RS04875 PF00989 PAS fold dqs_RS04875 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS04875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS04880 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_RS04885 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component dqs_RS04890 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_RS04895 PF09335 SNARE associated Golgi protein dqs_RS04900 PF00334 Nucleoside diphosphate kinase dqs_RS04905 PF04055 Radical SAM superfamily dqs_RS04920 PF04551 GcpE protein dqs_RS04925 PF03129 Anticodon binding domain dqs_RS04925 PF13393 Histidyl-tRNA synthetase dqs_RS04930 PF09976 Tetratricopeptide repeat-like domain dqs_RS04935 PF13360 PQQ-like domain dqs_RS04940 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal dqs_RS04940 PF01926 50S ribosome-binding GTPase dqs_RS04945 PF17209 Hfq protein dqs_RS04950 PF16360 GTP-binding GTPase Middle Region dqs_RS04950 PF13167 GTP-binding GTPase N-terminal dqs_RS04950 PF01926 50S ribosome-binding GTPase dqs_RS04955 PF12221 Bacterial membrane protein N terminal dqs_RS04955 PF01145 SPFH domain / Band 7 family dqs_RS04960 PF01145 SPFH domain / Band 7 family dqs_RS04965 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) dqs_RS04970 PF13393 Histidyl-tRNA synthetase dqs_RS04975 PF00709 Adenylosuccinate synthetase dqs_RS04990 PF08461 Ribonuclease R winged-helix domain dqs_RS04990 PF08206 Ribonuclease B OB domain dqs_RS04990 PF00773 RNB domain dqs_RS04990 PF17876 Cold shock domain dqs_RS04990 PF00575 S1 RNA binding domain dqs_RS04995 PF00588 SpoU rRNA Methylase family dqs_RS04995 PF08032 RNA 2'-O ribose methyltransferase substrate binding dqs_RS05000 PF08376 Nitrate and nitrite sensing dqs_RS05000 PF03861 ANTAR domain dqs_RS05010 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS05015 PF00005 ABC transporter dqs_RS05020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_RS05025 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain dqs_RS05025 PF04324 BFD-like [2Fe-2S] binding domain dqs_RS05025 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS05025 PF01077 Nitrite and sulphite reductase 4Fe-4S domain dqs_RS05025 PF18267 Rubredoxin NAD+ reductase C-terminal domain dqs_RS05030 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_RS05030 PF00384 Molybdopterin oxidoreductase dqs_RS05030 PF04324 BFD-like [2Fe-2S] binding domain dqs_RS05030 PF01568 Molydopterin dinucleotide binding domain dqs_RS05035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS05035 PF00672 HAMP domain dqs_RS05035 PF02203 Tar ligand binding domain homologue dqs_RS05045 PF03707 Bacterial signalling protein N terminal repeat dqs_RS05045 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS05045 PF00563 EAL domain dqs_RS05055 PF01396 Topoisomerase DNA binding C4 zinc finger dqs_RS05060 PF00881 Nitroreductase family dqs_RS05065 PF00258 Flavodoxin dqs_RS05075 PF02535 ZIP Zinc transporter dqs_RS05085 PF12170 DNA polymerase III tau subunit V interacting with alpha dqs_RS05085 PF12169 DNA polymerase III subunits gamma and tau domain III dqs_RS05085 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding dqs_RS05090 PF02575 YbaB/EbfC DNA-binding family dqs_RS05095 PF13662 Toprim domain dqs_RS05095 PF02132 RecR protein dqs_RS05100 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal dqs_RS05100 PF00355 Rieske [2Fe-2S] domain dqs_RS05105 PF00032 Cytochrome b(C-terminal)/b6/petD dqs_RS05105 PF00033 Cytochrome b/b6/petB dqs_RS05110 PF02167 Cytochrome C1 family dqs_RS05115 PF02798 Glutathione S-transferase, N-terminal domain dqs_RS05115 PF00043 Glutathione S-transferase, C-terminal domain dqs_RS05125 PF00534 Glycosyl transferases group 1 dqs_RS05125 PF13439 Glycosyltransferase Family 4 dqs_RS05135 PF01266 FAD dependent oxidoreductase dqs_RS05140 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain dqs_RS05155 PF02653 Branched-chain amino acid transport system / permease component dqs_RS05160 PF00005 ABC transporter dqs_RS05165 PF00166 Chaperonin 10 Kd subunit dqs_RS05170 PF00118 TCP-1/cpn60 chaperonin family dqs_RS05175 PF00486 Transcriptional regulatory protein, C terminal dqs_RS05175 PF00072 Response regulator receiver domain dqs_RS05180 PF08521 Two-component sensor kinase N-terminal dqs_RS05180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS05180 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS05185 PF04341 Protein of unknown function, DUF485 dqs_RS05190 PF00474 Sodium:solute symporter family dqs_RS05195 PF00486 Transcriptional regulatory protein, C terminal dqs_RS05195 PF00072 Response regulator receiver domain dqs_RS05310 PF01527 Transposase dqs_RS05320 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain dqs_RS05320 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain dqs_RS05320 PF01488 Shikimate / quinate 5-dehydrogenase dqs_RS05325 PF03462 PCRF domain dqs_RS05325 PF00472 RF-1 domain dqs_RS05330 PF17827 PrmC N-terminal domain dqs_RS05330 PF05175 Methyltransferase small domain dqs_RS05335 PF00462 Glutaredoxin dqs_RS05360 PF00069 Protein kinase domain dqs_RS05360 PF03793 PASTA domain dqs_RS05365 PF00206 Lyase dqs_RS05365 PF14698 Argininosuccinate lyase C-terminal dqs_RS05370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS05370 PF07694 5TMR of 5TMR-LYT dqs_RS05370 PF06580 Histidine kinase dqs_RS05375 PF04397 LytTr DNA-binding domain dqs_RS05375 PF00072 Response regulator receiver domain dqs_RS05380 PF00311 Phosphoenolpyruvate carboxylase dqs_RS05385 PF03900 Porphobilinogen deaminase, C-terminal domain dqs_RS05385 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain dqs_RS05390 PF02602 Uroporphyrinogen-III synthase HemD dqs_RS05395 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase dqs_RS05405 PF07729 FCD domain dqs_RS05405 PF00392 Bacterial regulatory proteins, gntR family dqs_RS05410 PF02913 FAD linked oxidases, C-terminal domain dqs_RS05410 PF01565 FAD binding domain dqs_RS05415 PF01565 FAD binding domain dqs_RS05420 PF02754 Cysteine-rich domain dqs_RS05420 PF13183 4Fe-4S dicluster domain dqs_RS05430 PF05222 Alanine dehydrogenase/PNT, N-terminal domain dqs_RS05430 PF01262 Alanine dehydrogenase/PNT, C-terminal domain dqs_RS05435 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch dqs_RS05440 PF02233 NAD(P) transhydrogenase beta subunit dqs_RS05450 PF03707 Bacterial signalling protein N terminal repeat dqs_RS05450 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS05450 PF00563 EAL domain dqs_RS05455 PF00270 DEAD/DEAH box helicase dqs_RS05455 PF00271 Helicase conserved C-terminal domain dqs_RS05460 PF01728 FtsJ-like methyltransferase dqs_RS05460 PF18125 RlmM ferredoxin-like domain dqs_RS05465 PF00248 Aldo/keto reductase family dqs_RS05475 PF13416 Bacterial extracellular solute-binding protein dqs_RS05480 PF03009 Glycerophosphoryl diester phosphodiesterase family dqs_RS05485 PF00348 Polyprenyl synthetase dqs_RS05495 PF03466 LysR substrate binding domain dqs_RS05495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS05500 PF01070 FMN-dependent dehydrogenase dqs_RS05505 PF13525 Outer membrane lipoprotein dqs_RS05510 PF00849 RNA pseudouridylate synthase dqs_RS05515 PF02578 Multi-copper polyphenol oxidoreductase laccase dqs_RS05525 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus dqs_RS05530 PF00106 short chain dehydrogenase dqs_RS05535 PF00106 short chain dehydrogenase dqs_RS05540 PF07879 PHB/PHA accumulation regulator DNA-binding domain dqs_RS05540 PF05233 PHB accumulation regulatory domain dqs_RS05545 PF00919 Uncharacterized protein family UPF0004 dqs_RS05545 PF18693 TRAM domain dqs_RS05545 PF04055 Radical SAM superfamily dqs_RS05550 PF01734 Patatin-like phospholipase dqs_RS05555 PF02913 FAD linked oxidases, C-terminal domain dqs_RS05555 PF01565 FAD binding domain dqs_RS05590 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_RS05590 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_RS05595 PF07498 Rho termination factor, N-terminal domain dqs_RS05595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain dqs_RS05595 PF07497 Rho termination factor, RNA-binding domain dqs_RS05600 PF00085 Thioredoxin dqs_RS05605 PF11953 Domain of unknown function (DUF3470) dqs_RS05605 PF00037 4Fe-4S binding domain dqs_RS05615 PF13193 AMP-binding enzyme C-terminal domain dqs_RS05615 PF00501 AMP-binding enzyme dqs_RS05620 PF00205 Thiamine pyrophosphate enzyme, central domain dqs_RS05620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain dqs_RS05620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain dqs_RS05625 PF01842 ACT domain dqs_RS05630 PF01264 Chorismate synthase dqs_RS05635 PF12832 MFS_1 like family dqs_RS05640 PF07720 Tetratricopeptide repeat dqs_RS05640 PF01435 Peptidase family M48 dqs_RS05645 PF00330 Aconitase family (aconitate hydratase) dqs_RS05650 PF00694 Aconitase C-terminal domain dqs_RS05655 PF00180 Isocitrate/isopropylmalate dehydrogenase dqs_RS05660 PF02774 Semialdehyde dehydrogenase, dimerisation domain dqs_RS05660 PF01118 Semialdehyde dehydrogenase, NAD binding domain dqs_RS05675 PF01416 tRNA pseudouridine synthase dqs_RS05680 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase dqs_RS05685 PF00291 Pyridoxal-phosphate dependent enzyme dqs_RS05690 PF00290 Tryptophan synthase alpha chain dqs_RS05695 PF17848 Acetyl-coA carboxylase zinc finger domain dqs_RS05695 PF01039 Carboxyl transferase domain dqs_RS05700 PF08245 Mur ligase middle domain dqs_RS05700 PF02875 Mur ligase family, glutamate ligase domain dqs_RS05705 PF05036 Sporulation related domain dqs_RS05715 PF00156 Phosphoribosyl transferase domain dqs_RS05720 PF01053 Cys/Met metabolism PLP-dependent enzyme dqs_RS05725 PF00149 Calcineurin-like phosphoesterase dqs_RS05730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD dqs_RS05735 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD dqs_RS05750 PF01406 tRNA synthetases class I (C) catalytic domain dqs_RS05750 PF09190 DALR domain dqs_RS05760 PF00684 DnaJ central domain dqs_RS05760 PF00226 DnaJ domain dqs_RS05760 PF01556 DnaJ C terminal domain dqs_RS05765 PF00012 Hsp70 protein dqs_RS05770 PF01025 GrpE dqs_RS05775 PF00521 DNA gyrase/topoisomerase IV, subunit A dqs_RS05775 PF03989 DNA gyrase C-terminal domain, beta-propeller dqs_RS05780 PF00266 Aminotransferase class-V dqs_RS05785 PF00800 Prephenate dehydratase dqs_RS05785 PF01817 Chorismate mutase type II dqs_RS05785 PF01842 ACT domain dqs_RS05790 PF00155 Aminotransferase class I and II dqs_RS05795 PF02153 Prephenate dehydrogenase dqs_RS05795 PF01842 ACT domain dqs_RS05800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) dqs_RS05805 PF00575 S1 RNA binding domain dqs_RS05810 PF00216 Bacterial DNA-binding protein dqs_RS05820 PF18073 Rubredoxin metal binding domain dqs_RS05825 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain dqs_RS05825 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain dqs_RS05825 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain dqs_RS05830 PF00291 Pyridoxal-phosphate dependent enzyme dqs_RS05845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) dqs_RS05845 PF03129 Anticodon binding domain dqs_RS05845 PF02824 TGS domain dqs_RS05845 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain dqs_RS05850 PF05198 Translation initiation factor IF-3, N-terminal domain dqs_RS05850 PF00707 Translation initiation factor IF-3, C-terminal domain dqs_RS05855 PF01632 Ribosomal protein L35 dqs_RS05860 PF00453 Ribosomal protein L20 dqs_RS05865 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain dqs_RS05865 PF01409 tRNA synthetases class II core domain (F) dqs_RS05870 PF03483 B3/4 domain dqs_RS05870 PF03484 tRNA synthetase B5 domain dqs_RS05870 PF03147 Ferredoxin-fold anticodon binding domain dqs_RS05870 PF01588 Putative tRNA binding domain dqs_RS05870 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain dqs_RS05875 PF00216 Bacterial DNA-binding protein dqs_RS05890 PF01975 Survival protein SurE dqs_RS05900 PF01476 LysM domain dqs_RS05900 PF01551 Peptidase family M23 dqs_RS05905 PF00140 Sigma-70 factor, region 1.2 dqs_RS05905 PF04542 Sigma-70 region 2 dqs_RS05905 PF04539 Sigma-70 region 3 dqs_RS05905 PF04545 Sigma-70, region 4 dqs_RS05910 PF13406 Transglycosylase SLT domain dqs_RS05915 PF11992 Domain of unknown function (DUF3488) dqs_RS05915 PF13559 Domain of unknown function (DUF4129) dqs_RS05915 PF01841 Transglutaminase-like superfamily dqs_RS05925 PF07726 ATPase family associated with various cellular activities (AAA) dqs_RS05925 PF17863 AAA lid domain dqs_RS05930 PF00850 Histone deacetylase domain dqs_RS05935 PF00701 Dihydrodipicolinate synthetase family dqs_RS05940 PF06804 NlpB/DapX lipoprotein dqs_RS05950 PF08007 Cupin superfamily protein dqs_RS05955 PF01938 TRAM domain dqs_RS05955 PF05958 tRNA (Uracil-5-)-methyltransferase dqs_RS05965 PF00849 RNA pseudouridylate synthase dqs_RS05975 PF01312 FlhB HrpN YscU SpaS Family dqs_RS05980 PF00771 FHIPEP family dqs_RS05985 PF00448 SRP54-type protein, GTPase domain dqs_RS05995 PF04545 Sigma-70, region 4 dqs_RS05995 PF04542 Sigma-70 region 2 dqs_RS05995 PF04539 Sigma-70 region 3 dqs_RS06000 PF01618 MotA/TolQ/ExbB proton channel family dqs_RS06005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS06005 PF00672 HAMP domain dqs_RS06010 PF00691 OmpA family dqs_RS06010 PF13677 Membrane MotB of proton-channel complex MotA/MotB dqs_RS06015 PF01814 Hemerythrin HHE cation binding domain dqs_RS06020 PF00521 DNA gyrase/topoisomerase IV, subunit A dqs_RS06035 PF01751 Toprim domain dqs_RS06035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS06035 PF00986 DNA gyrase B subunit, carboxyl terminus dqs_RS06035 PF00204 DNA gyrase B dqs_RS06040 PF03458 UPF0126 domain dqs_RS06045 PF00463 Isocitrate lyase family dqs_RS06050 PF14525 AraC-binding-like domain dqs_RS06050 PF12833 Helix-turn-helix domain dqs_RS06070 PF00866 Ring hydroxylating beta subunit dqs_RS06075 PF00355 Rieske [2Fe-2S] domain dqs_RS06075 PF00848 Ring hydroxylating alpha subunit (catalytic domain) dqs_RS06080 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS06080 PF00175 Oxidoreductase NAD-binding domain dqs_RS06085 PF02653 Branched-chain amino acid transport system / permease component dqs_RS06090 PF02653 Branched-chain amino acid transport system / permease component dqs_RS06090 PF11862 Domain of unknown function (DUF3382) dqs_RS06095 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_RS06095 PF00005 ABC transporter dqs_RS06100 PF00005 ABC transporter dqs_RS06110 PF03737 Aldolase/RraA dqs_RS06120 PF17871 AAA lid domain dqs_RS06120 PF00004 ATPase family associated with various cellular activities (AAA) dqs_RS06120 PF07724 AAA domain (Cdc48 subfamily) dqs_RS06120 PF02861 Clp amino terminal domain, pathogenicity island component dqs_RS06120 PF10431 C-terminal, D2-small domain, of ClpB protein dqs_RS06125 PF02617 ATP-dependent Clp protease adaptor protein ClpS dqs_RS06130 PF00313 'Cold-shock' DNA-binding domain dqs_RS06135 PF00471 Ribosomal protein L33 dqs_RS06140 PF00830 Ribosomal L28 family dqs_RS06145 PF04002 RadC-like JAB domain dqs_RS06150 PF02441 Flavoprotein dqs_RS06150 PF04127 DNA / pantothenate metabolism flavoprotein dqs_RS06155 PF00692 dUTPase dqs_RS06160 PF00293 NUDIX domain dqs_RS06160 PF13344 Haloacid dehalogenase-like hydrolase dqs_RS06165 PF10518 TAT (twin-arginine translocation) pathway signal sequence dqs_RS06165 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding dqs_RS06165 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS06185 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) dqs_RS06190 PF03971 Monomeric isocitrate dehydrogenase dqs_RS06195 PF00180 Isocitrate/isopropylmalate dehydrogenase dqs_RS06205 PF00679 Elongation factor G C-terminus dqs_RS06205 PF14492 Elongation Factor G, domain II dqs_RS06205 PF03764 Elongation factor G, domain IV dqs_RS06205 PF00009 Elongation factor Tu GTP binding domain dqs_RS06205 PF03144 Elongation factor Tu domain 2 dqs_RS06215 PF04172 LrgB-like family dqs_RS06235 PF03060 Nitronate monooxygenase dqs_RS06240 PF01274 Malate synthase dqs_RS06245 PF01925 Sulfite exporter TauE/SafE dqs_RS06250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS06250 PF03466 LysR substrate binding domain dqs_RS06255 PF05161 MOFRL family dqs_RS06255 PF13660 Domain of unknown function (DUF4147) dqs_RS06260 PF01261 Xylose isomerase-like TIM barrel dqs_RS06270 PF02652 L-lactate permease dqs_RS06280 PF11870 Domain of unknown function (DUF3390) dqs_RS06280 PF02589 LUD domain dqs_RS06280 PF13183 4Fe-4S dicluster domain dqs_RS06285 PF02589 LUD domain dqs_RS06290 PF02754 Cysteine-rich domain dqs_RS06295 PF07729 FCD domain dqs_RS06295 PF00392 Bacterial regulatory proteins, gntR family dqs_RS06310 PF03887 YfbU domain dqs_RS06330 PF18267 Rubredoxin NAD+ reductase C-terminal domain dqs_RS06330 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS06330 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain dqs_RS06330 PF01077 Nitrite and sulphite reductase 4Fe-4S domain dqs_RS06330 PF04324 BFD-like [2Fe-2S] binding domain dqs_RS06335 PF13806 Rieske-like [2Fe-2S] domain dqs_RS06340 PF01226 Formate/nitrite transporter dqs_RS06345 PF00069 Protein kinase domain dqs_RS06345 PF03793 PASTA domain dqs_RS06350 PF04115 Ureidoglycolate lyase dqs_RS06355 PF03561 Allantoicase repeat dqs_RS06365 PF09349 OHCU decarboxylase dqs_RS06365 PF01014 Uricase dqs_RS06375 PF00576 HIUase/Transthyretin family dqs_RS06380 PF00561 alpha/beta hydrolase fold dqs_RS06385 PF13657 HipA N-terminal domain dqs_RS06385 PF07804 HipA-like C-terminal domain dqs_RS06395 PF12706 Beta-lactamase superfamily domain dqs_RS06400 PF03070 TENA/THI-4/PQQC family dqs_RS06405 PF05402 Coenzyme PQQ synthesis protein D (PqqD) dqs_RS06410 PF13186 Iron-sulfur cluster-binding domain dqs_RS06410 PF04055 Radical SAM superfamily dqs_RS06425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_RS06430 PF07690 Major Facilitator Superfamily dqs_RS06435 PF00202 Aminotransferase class-III dqs_RS06440 PF00296 Luciferase-like monooxygenase dqs_RS06445 PF02649 Type I GTP cyclohydrolase folE2 dqs_RS06450 PF13292 1-deoxy-D-xylulose-5-phosphate synthase dqs_RS06450 PF02779 Transketolase, pyrimidine binding domain dqs_RS06450 PF02780 Transketolase, C-terminal domain dqs_RS06455 PF00348 Polyprenyl synthetase dqs_RS06460 PF02609 Exonuclease VII small subunit dqs_RS06470 PF02401 LytB protein dqs_RS06475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase dqs_RS06480 PF01252 Signal peptidase (SPase) II dqs_RS06485 PF06827 Zinc finger found in FPG and IleRS dqs_RS06485 PF08264 Anticodon-binding domain of tRNA dqs_RS06485 PF00133 tRNA synthetases class I (I, L, M and V) dqs_RS06490 PF06574 FAD synthetase dqs_RS06490 PF01687 Riboflavin kinase dqs_RS06500 PF00753 Metallo-beta-lactamase superfamily dqs_RS06500 PF16123 Hydroxyacylglutathione hydrolase C-terminus dqs_RS06510 PF02492 CobW/HypB/UreG, nucleotide-binding domain dqs_RS06510 PF07683 Cobalamin synthesis protein cobW C-terminal domain dqs_RS06535 PF01297 Zinc-uptake complex component A periplasmic dqs_RS06540 PF00005 ABC transporter dqs_RS06545 PF00950 ABC 3 transport family dqs_RS06550 PF00950 ABC 3 transport family dqs_RS06555 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_RS06560 PF00970 Oxidoreductase FAD-binding domain dqs_RS06560 PF00175 Oxidoreductase NAD-binding domain dqs_RS06560 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS06565 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_RS06570 PF02406 MmoB/DmpM family dqs_RS06575 PF00118 TCP-1/cpn60 chaperonin family dqs_RS06580 PF00158 Sigma-54 interaction domain dqs_RS06580 PF13426 PAS domain dqs_RS06580 PF02954 Bacterial regulatory protein, Fis family dqs_RS06585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_RS06595 PF00732 GMC oxidoreductase dqs_RS06595 PF05199 GMC oxidoreductase dqs_RS06615 PF02322 Cytochrome bd terminal oxidase subunit II dqs_RS06620 PF01654 Cytochrome bd terminal oxidase subunit I dqs_RS06630 PF00072 Response regulator receiver domain dqs_RS06630 PF02954 Bacterial regulatory protein, Fis family dqs_RS06630 PF00158 Sigma-54 interaction domain dqs_RS06635 PF00355 Rieske [2Fe-2S] domain dqs_RS06635 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal dqs_RS06640 PF00664 ABC transporter transmembrane region dqs_RS06640 PF00005 ABC transporter dqs_RS06650 PF01494 FAD binding domain dqs_RS06660 PF04055 Radical SAM superfamily dqs_RS06660 PF13186 Iron-sulfur cluster-binding domain dqs_RS06665 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit dqs_RS06675 PF11741 AMIN domain dqs_RS06675 PF01520 N-acetylmuramoyl-L-alanine amidase dqs_RS06680 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE dqs_RS06685 PF08331 Domain of unknown function (DUF1730) dqs_RS06690 PF13378 Enolase C-terminal domain-like dqs_RS06695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS06695 PF03466 LysR substrate binding domain dqs_RS06700 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal dqs_RS06700 PF02579 Dinitrogenase iron-molybdenum cofactor dqs_RS06710 PF04102 SlyX dqs_RS06715 PF12392 Collagenase dqs_RS06715 PF01136 Peptidase family U32 dqs_RS06725 PF07995 Glucose / Sorbosone dehydrogenase dqs_RS06730 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS06730 PF03707 Bacterial signalling protein N terminal repeat dqs_RS06730 PF00563 EAL domain dqs_RS06730 PF13188 PAS domain dqs_RS06735 PF13416 Bacterial extracellular solute-binding protein dqs_RS06740 PF03793 PASTA domain dqs_RS06740 PF00069 Protein kinase domain dqs_RS06755 PF07687 Peptidase dimerisation domain dqs_RS06755 PF01546 Peptidase family M20/M25/M40 dqs_RS06765 PF04536 TPM domain dqs_RS06770 PF04011 LemA family dqs_RS06775 PF07311 Dodecin dqs_RS06790 PF01556 DnaJ C terminal domain dqs_RS06790 PF00226 DnaJ domain dqs_RS06795 PF03061 Thioesterase superfamily dqs_RS06800 PF09905 DNA-binding protein VF530 dqs_RS06805 PF02222 ATP-grasp domain dqs_RS06805 PF01370 NAD dependent epimerase/dehydratase family dqs_RS06825 PF00005 ABC transporter dqs_RS06830 PF02405 Permease MlaE dqs_RS06835 PF12848 ABC transporter dqs_RS06835 PF00005 ABC transporter dqs_RS06840 PF01209 ubiE/COQ5 methyltransferase family dqs_RS06845 PF00255 Glutathione peroxidase dqs_RS06850 PF00563 EAL domain dqs_RS06850 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS06850 PF03707 Bacterial signalling protein N terminal repeat dqs_RS06855 PF00034 Cytochrome c dqs_RS06855 PF14376 Haem-binding domain dqs_RS06855 PF03150 Di-haem cytochrome c peroxidase dqs_RS06860 PF00175 Oxidoreductase NAD-binding domain dqs_RS06860 PF00970 Oxidoreductase FAD-binding domain dqs_RS06865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS06865 PF03466 LysR substrate binding domain dqs_RS06870 PF00535 Glycosyl transferase family 2 dqs_RS06870 PF03552 Cellulose synthase dqs_RS06870 PF07238 PilZ domain dqs_RS06885 PF02347 Glycine cleavage system P-protein dqs_RS06890 PF01597 Glycine cleavage H-protein dqs_RS06895 PF01571 Aminomethyltransferase folate-binding domain dqs_RS06895 PF08669 Glycine cleavage T-protein C-terminal barrel domain dqs_RS06925 PF07690 Major Facilitator Superfamily dqs_RS06930 PF03793 PASTA domain dqs_RS06930 PF00069 Protein kinase domain dqs_RS06950 PF03710 Glutamate-ammonia ligase adenylyltransferase dqs_RS06950 PF08335 GlnD PII-uridylyltransferase dqs_RS06960 PF00795 Carbon-nitrogen hydrolase dqs_RS06965 PF01523 Putative modulator of DNA gyrase dqs_RS06980 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE dqs_RS06995 PF06744 Type VI secretion protein IcmF C-terminal dqs_RS06995 PF14331 ImcF-related N-terminal domain dqs_RS06995 PF06761 Intracellular multiplication and human macrophage-killing dqs_RS07005 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath dqs_RS07020 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) dqs_RS07020 PF04717 Type VI secretion system, phage-baseplate injector dqs_RS07020 PF13296 Putative type VI secretion system Rhs element Vgr dqs_RS07025 PF05947 Type VI secretion system, TssF dqs_RS07045 PF05958 tRNA (Uracil-5-)-methyltransferase dqs_RS07050 PF08274 PhnA Zinc-Ribbon dqs_RS07050 PF03831 PhnA domain dqs_RS07060 PF03649 Uncharacterised protein family (UPF0014) dqs_RS07065 PF00005 ABC transporter dqs_RS07065 PF08402 TOBE domain dqs_RS07080 PF13649 Methyltransferase domain dqs_RS07105 PF16360 GTP-binding GTPase Middle Region dqs_RS07105 PF13167 GTP-binding GTPase N-terminal dqs_RS07105 PF01926 50S ribosome-binding GTPase dqs_RS07115 PF01464 Transglycosylase SLT domain dqs_RS07115 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_RS07120 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS07125 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS07130 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_RS07135 PF03466 LysR substrate binding domain dqs_RS07135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS07140 PF00005 ABC transporter dqs_RS07140 PF12857 TOBE-like domain dqs_RS07145 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS07150 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS07160 PF13406 Transglycosylase SLT domain dqs_RS07165 PF00106 short chain dehydrogenase dqs_RS07180 PF00115 Cytochrome C and Quinol oxidase polypeptide I dqs_RS07190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_RS07190 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP dqs_RS07195 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase dqs_RS07195 PF12801 4Fe-4S binding domain dqs_RS07195 PF13746 4Fe-4S dicluster domain dqs_RS07220 PF00561 alpha/beta hydrolase fold dqs_RS07220 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus dqs_RS07225 PF13545 Crp-like helix-turn-helix domain dqs_RS07225 PF00027 Cyclic nucleotide-binding domain dqs_RS07230 PF06969 HemN C-terminal domain dqs_RS07230 PF04055 Radical SAM superfamily dqs_RS07240 PF09278 MerR, DNA binding dqs_RS07240 PF00376 MerR family regulatory protein dqs_RS07245 PF00403 Heavy-metal-associated domain dqs_RS07250 PF00403 Heavy-metal-associated domain dqs_RS07255 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS07255 PF03707 Bacterial signalling protein N terminal repeat dqs_RS07255 PF00563 EAL domain dqs_RS07260 PF00719 Inorganic pyrophosphatase dqs_RS07270 PF02540 NAD synthase dqs_RS07270 PF00795 Carbon-nitrogen hydrolase dqs_RS07275 PF00543 Nitrogen regulatory protein P-II dqs_RS07280 PF01713 Smr domain dqs_RS07285 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS07290 PF13545 Crp-like helix-turn-helix domain dqs_RS07290 PF00027 Cyclic nucleotide-binding domain dqs_RS07295 PF09397 Ftsk gamma domain dqs_RS07295 PF17854 FtsK alpha domain dqs_RS07295 PF13491 4TM region of DNA translocase FtsK/SpoIIIE dqs_RS07295 PF01580 FtsK/SpoIIIE family dqs_RS07300 PF03548 Outer membrane lipoprotein carrier protein LolA dqs_RS07305 PF12002 MgsA AAA+ ATPase C terminal dqs_RS07305 PF16193 AAA C-terminal domain dqs_RS07305 PF00004 ATPase family associated with various cellular activities (AAA) dqs_RS07315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) dqs_RS07315 PF02403 Seryl-tRNA synthetase N-terminal domain dqs_RS07320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS07320 PF00672 HAMP domain dqs_RS07320 PF12729 Four helix bundle sensory module for signal transduction dqs_RS07325 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS07325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain dqs_RS07330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) dqs_RS07330 PF00364 Biotin-requiring enzyme dqs_RS07330 PF02817 e3 binding domain dqs_RS07335 PF00456 Transketolase, thiamine diphosphate binding domain dqs_RS07335 PF17831 Pyruvate dehydrogenase E1 component middle domain dqs_RS07345 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS07345 PF00989 PAS fold dqs_RS07345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS07350 PF00196 Bacterial regulatory proteins, luxR family dqs_RS07350 PF00072 Response regulator receiver domain dqs_RS07355 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain dqs_RS07355 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain dqs_RS07360 PF00731 AIR carboxylase dqs_RS07365 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain dqs_RS07365 PF02222 ATP-grasp domain dqs_RS07370 PF03481 Putative GTP-binding controlling metal-binding dqs_RS07370 PF01300 Telomere recombination dqs_RS07380 PF00117 Glutamine amidotransferase class-I dqs_RS07380 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain dqs_RS07385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain dqs_RS07385 PF02142 MGS-like domain dqs_RS07385 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain dqs_RS07390 PF03449 Transcription elongation factor, N-terminal dqs_RS07390 PF01272 Transcription elongation factor, GreA/GreB, C-term dqs_RS07405 PF01728 FtsJ-like methyltransferase dqs_RS07410 PF17862 AAA+ lid domain dqs_RS07410 PF00004 ATPase family associated with various cellular activities (AAA) dqs_RS07410 PF06480 FtsH Extracellular dqs_RS07410 PF01434 Peptidase family M41 dqs_RS07415 PF00809 Pterin binding enzyme dqs_RS07420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I dqs_RS07420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II dqs_RS07420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III dqs_RS07420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain dqs_RS07425 PF12849 PBP superfamily domain dqs_RS07430 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS07435 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS07440 PF00005 ABC transporter dqs_RS07445 PF00121 Triosephosphate isomerase dqs_RS07450 PF03840 Preprotein translocase SecG subunit dqs_RS07460 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 dqs_RS07465 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit dqs_RS07470 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit dqs_RS07475 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit dqs_RS07485 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit dqs_RS07485 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region dqs_RS07485 PF10531 SLBB domain dqs_RS07490 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal dqs_RS07490 PF00384 Molybdopterin oxidoreductase dqs_RS07490 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region dqs_RS07495 PF00146 NADH dehydrogenase dqs_RS07500 PF12838 4Fe-4S dicluster domain dqs_RS07505 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 dqs_RS07510 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L dqs_RS07515 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus dqs_RS07515 PF00361 Proton-conducting membrane transporter dqs_RS07520 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus dqs_RS07520 PF00361 Proton-conducting membrane transporter dqs_RS07525 PF00361 Proton-conducting membrane transporter dqs_RS07530 PF00293 NUDIX domain dqs_RS07535 PF03477 ATP cone domain dqs_RS07535 PF00317 Ribonucleotide reductase, all-alpha domain dqs_RS07535 PF02867 Ribonucleotide reductase, barrel domain dqs_RS07540 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit dqs_RS07540 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region dqs_RS07545 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region dqs_RS07545 PF12838 4Fe-4S dicluster domain dqs_RS07545 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_RS07545 PF00384 Molybdopterin oxidoreductase dqs_RS07545 PF01568 Molydopterin dinucleotide binding domain dqs_RS07550 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit dqs_RS07555 PF00374 Nickel-dependent hydrogenase dqs_RS07570 PF01545 Cation efflux family dqs_RS07590 PF01053 Cys/Met metabolism PLP-dependent enzyme dqs_RS07600 PF03449 Transcription elongation factor, N-terminal dqs_RS07600 PF01272 Transcription elongation factor, GreA/GreB, C-term dqs_RS07605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS07605 PF00183 Hsp90 protein dqs_RS07610 PF00654 Voltage gated chloride channel dqs_RS07615 PF01047 MarR family dqs_RS07620 PF00258 Flavodoxin dqs_RS07620 PF01613 Flavin reductase like domain dqs_RS07635 PF17871 AAA lid domain dqs_RS07635 PF07724 AAA domain (Cdc48 subfamily) dqs_RS07635 PF10431 C-terminal, D2-small domain, of ClpB protein dqs_RS07635 PF00004 ATPase family associated with various cellular activities (AAA) dqs_RS07635 PF02861 Clp amino terminal domain, pathogenicity island component dqs_RS07640 PF00034 Cytochrome c dqs_RS07645 PF00034 Cytochrome c dqs_RS07655 PF00633 Helix-hairpin-helix motif dqs_RS07655 PF10576 Iron-sulfur binding domain of endonuclease III dqs_RS07655 PF00730 HhH-GPD superfamily base excision DNA repair protein dqs_RS07660 PF02508 Rnf-Nqr subunit, membrane protein dqs_RS07665 PF04205 FMN-binding domain dqs_RS07670 PF03116 NQR2, RnfD, RnfE family dqs_RS07675 PF13237 4Fe-4S dicluster domain dqs_RS07675 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit dqs_RS07675 PF13375 RnfC Barrel sandwich hybrid domain dqs_RS07675 PF10531 SLBB domain dqs_RS07680 PF04060 Putative Fe-S cluster dqs_RS07685 PF02508 Rnf-Nqr subunit, membrane protein dqs_RS07700 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS07700 PF00072 Response regulator receiver domain dqs_RS07705 PF03707 Bacterial signalling protein N terminal repeat dqs_RS07705 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS07705 PF00563 EAL domain dqs_RS07710 PF05247 Flagellar transcriptional activator (FlhD) dqs_RS07715 PF05280 Flagellar transcriptional activator (FlhC) dqs_RS07720 PF01618 MotA/TolQ/ExbB proton channel family dqs_RS07725 PF13677 Membrane MotB of proton-channel complex MotA/MotB dqs_RS07725 PF00691 OmpA family dqs_RS07730 PF00072 Response regulator receiver domain dqs_RS07730 PF01584 CheW-like domain dqs_RS07730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS07730 PF01627 Hpt domain dqs_RS07735 PF09078 CheY binding dqs_RS07735 PF01584 CheW-like domain dqs_RS07735 PF02895 Signal transducing histidine kinase, homodimeric domain dqs_RS07735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS07735 PF01627 Hpt domain dqs_RS07740 PF01584 CheW-like domain dqs_RS07745 PF02203 Tar ligand binding domain homologue dqs_RS07745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS07745 PF00672 HAMP domain dqs_RS07750 PF03705 CheR methyltransferase, all-alpha domain dqs_RS07750 PF01739 CheR methyltransferase, SAM binding domain dqs_RS07755 PF00072 Response regulator receiver domain dqs_RS07755 PF01339 CheB methylesterase dqs_RS07760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS07760 PF13426 PAS domain dqs_RS07760 PF08447 PAS fold dqs_RS07765 PF00072 Response regulator receiver domain dqs_RS07765 PF01584 CheW-like domain dqs_RS07770 PF00072 Response regulator receiver domain dqs_RS07770 PF01584 CheW-like domain dqs_RS07775 PF00072 Response regulator receiver domain dqs_RS07780 PF04344 Chemotaxis phosphatase, CheZ dqs_RS07785 PF00072 Response regulator receiver domain dqs_RS07785 PF01627 Hpt domain dqs_RS07785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS07785 PF02895 Signal transducing histidine kinase, homodimeric domain dqs_RS07785 PF01584 CheW-like domain dqs_RS07795 PF00923 Transaldolase/Fructose-6-phosphate aldolase dqs_RS07800 PF00849 RNA pseudouridylate synthase dqs_RS07800 PF04287 tRNA pseudouridine synthase C dqs_RS07805 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain dqs_RS07805 PF02777 Iron/manganese superoxide dismutases, C-terminal domain dqs_RS07810 PF13742 OB-fold nucleic acid binding domain dqs_RS07810 PF02601 Exonuclease VII, large subunit dqs_RS07815 PF01618 MotA/TolQ/ExbB proton channel family dqs_RS07820 PF02472 Biopolymer transport protein ExbD/TolR dqs_RS07825 PF02606 Tetraacyldisaccharide-1-P 4'-kinase dqs_RS07830 PF03966 Trm112p-like protein dqs_RS07835 PF02348 Cytidylyltransferase dqs_RS07840 PF05191 Adenylate kinase, active site lid dqs_RS07845 PF00365 Phosphofructokinase dqs_RS07855 PF08448 PAS fold dqs_RS07855 PF00563 EAL domain dqs_RS07855 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS07860 PF02525 Flavodoxin-like fold dqs_RS07870 PF00749 tRNA synthetases class I (E and Q), catalytic domain dqs_RS07885 PF01266 FAD dependent oxidoreductase dqs_RS07885 PF05430 S-adenosyl-L-methionine-dependent methyltransferase dqs_RS07890 PF02872 5'-nucleotidase, C-terminal domain dqs_RS07890 PF00565 Staphylococcal nuclease homologue dqs_RS07890 PF00149 Calcineurin-like phosphoesterase dqs_RS07890 PF00746 LPXTG cell wall anchor motif dqs_RS07905 PF08495 FIST N domain dqs_RS07905 PF00563 EAL domain dqs_RS07905 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS07905 PF10442 FIST C domain dqs_RS07910 PF00152 tRNA synthetases class II (D, K and N) dqs_RS07910 PF01336 OB-fold nucleic acid binding domain dqs_RS07920 PF01661 Macro domain dqs_RS07925 PF00563 EAL domain dqs_RS07925 PF03707 Bacterial signalling protein N terminal repeat dqs_RS07925 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS07930 PF00072 Response regulator receiver domain dqs_RS07935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS07935 PF13188 PAS domain dqs_RS07935 PF00989 PAS fold dqs_RS07935 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS07940 PF01435 Peptidase family M48 dqs_RS07945 PF02463 RecF/RecN/SMC N terminal domain dqs_RS07945 PF06470 SMC proteins Flexible Hinge Domain dqs_RS07960 PF00472 RF-1 domain dqs_RS07960 PF03462 PCRF domain dqs_RS07970 PF01230 HIT domain dqs_RS07990 PF00196 Bacterial regulatory proteins, luxR family dqs_RS07990 PF00072 Response regulator receiver domain dqs_RS07995 PF07730 Histidine kinase dqs_RS07995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS08000 PF01368 DHH family dqs_RS08000 PF17768 RecJ OB domain dqs_RS08000 PF02272 DHHA1 domain dqs_RS08010 PF11842 Domain of unknown function (DUF3362) dqs_RS08010 PF04055 Radical SAM superfamily dqs_RS08010 PF08497 Radical SAM N-terminal dqs_RS08020 PF12704 MacB-like periplasmic core domain dqs_RS08020 PF02687 FtsX-like permease family dqs_RS08025 PF00005 ABC transporter dqs_RS08035 PF03772 Competence protein dqs_RS08035 PF00753 Metallo-beta-lactamase superfamily dqs_RS08040 PF00561 alpha/beta hydrolase fold dqs_RS08045 PF14403 Circularly permuted ATP-grasp type 2 dqs_RS08050 PF04168 A predicted alpha-helical domain with a conserved ER motif. dqs_RS08050 PF14403 Circularly permuted ATP-grasp type 2 dqs_RS08055 PF03193 RsgA GTPase dqs_RS08060 PF01435 Peptidase family M48 dqs_RS08065 PF00929 Exonuclease dqs_RS08070 PF00342 Phosphoglucose isomerase dqs_RS08080 PF01197 Ribosomal protein L31 dqs_RS08085 PF01207 Dihydrouridine synthase (Dus) dqs_RS08090 PF02390 Putative methyltransferase dqs_RS08100 PF03692 Putative zinc- or iron-chelating domain dqs_RS08105 PF03692 Putative zinc- or iron-chelating domain dqs_RS08140 PF00694 Aconitase C-terminal domain dqs_RS08140 PF00330 Aconitase family (aconitate hydratase) dqs_RS08145 PF06434 Aconitate hydratase 2 N-terminus dqs_RS08145 PF11791 Aconitate B N-terminal domain dqs_RS08145 PF00330 Aconitase family (aconitate hydratase) dqs_RS08150 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS08150 PF00563 EAL domain dqs_RS08150 PF03707 Bacterial signalling protein N terminal repeat dqs_RS08170 PF00676 Dehydrogenase E1 component dqs_RS08175 PF02780 Transketolase, C-terminal domain dqs_RS08175 PF02779 Transketolase, pyrimidine binding domain dqs_RS08175 PF00364 Biotin-requiring enzyme dqs_RS08185 PF07690 Major Facilitator Superfamily dqs_RS08190 PF03466 LysR substrate binding domain dqs_RS08190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS08195 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS08195 PF00563 EAL domain dqs_RS08195 PF03707 Bacterial signalling protein N terminal repeat dqs_RS08210 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain dqs_RS08210 PF00056 lactate/malate dehydrogenase, NAD binding domain dqs_RS08215 PF00392 Bacterial regulatory proteins, gntR family dqs_RS08215 PF07702 UTRA domain dqs_RS08230 PF00890 FAD binding domain dqs_RS08230 PF02910 Fumarate reductase flavoprotein C-term dqs_RS08235 PF13085 2Fe-2S iron-sulfur cluster binding domain dqs_RS08240 PF03937 Flavinator of succinate dehydrogenase dqs_RS08245 PF00285 Citrate synthase, C-terminal domain dqs_RS08250 PF02779 Transketolase, pyrimidine binding domain dqs_RS08250 PF16870 2-oxoglutarate dehydrogenase C-terminal dqs_RS08250 PF16078 2-oxoglutarate dehydrogenase N-terminus dqs_RS08250 PF00676 Dehydrogenase E1 component dqs_RS08255 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) dqs_RS08255 PF00364 Biotin-requiring enzyme dqs_RS08255 PF02817 e3 binding domain dqs_RS08260 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS08260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain dqs_RS08265 PF11339 Protein of unknown function (DUF3141) dqs_RS08270 PF03969 AFG1-like ATPase dqs_RS08275 PF04851 Type III restriction enzyme, res subunit dqs_RS08275 PF13307 Helicase C-terminal domain dqs_RS08280 PF03205 Molybdopterin guanine dinucleotide synthesis protein B dqs_RS08285 PF00994 Probable molybdopterin binding domain dqs_RS08285 PF03453 MoeA N-terminal region (domain I and II) dqs_RS08285 PF03454 MoeA C-terminal region (domain IV) dqs_RS08290 PF02597 ThiS family dqs_RS08295 PF02391 MoaE protein dqs_RS08305 PF10431 C-terminal, D2-small domain, of ClpB protein dqs_RS08305 PF17871 AAA lid domain dqs_RS08305 PF02861 Clp amino terminal domain, pathogenicity island component dqs_RS08305 PF07724 AAA domain (Cdc48 subfamily) dqs_RS08305 PF00004 ATPase family associated with various cellular activities (AAA) dqs_RS08310 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS08310 PF00563 EAL domain dqs_RS08310 PF03707 Bacterial signalling protein N terminal repeat dqs_RS08325 PF01062 Bestrophin, RFP-TM, chloride channel dqs_RS08330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle dqs_RS08335 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS08340 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS08340 PF12911 N-terminal TM domain of oligopeptide transport permease C dqs_RS08345 PF02696 Uncharacterized ACR, YdiU/UPF0061 family dqs_RS08355 PF01668 SmpB protein dqs_RS08360 PF03364 Polyketide cyclase / dehydrase and lipid transport dqs_RS08365 PF03658 RnfH family Ubiquitin dqs_RS08375 PF00571 CBS domain dqs_RS08375 PF00478 IMP dehydrogenase / GMP reductase domain dqs_RS08380 PF00117 Glutamine amidotransferase class-I dqs_RS08380 PF02540 NAD synthase dqs_RS08380 PF00958 GMP synthase C terminal domain dqs_RS08385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS08385 PF03466 LysR substrate binding domain dqs_RS08390 PF02525 Flavodoxin-like fold dqs_RS08395 PF02954 Bacterial regulatory protein, Fis family dqs_RS08395 PF00158 Sigma-54 interaction domain dqs_RS08395 PF00072 Response regulator receiver domain dqs_RS08410 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS08410 PF18698 Histidine kinase sensor domain dqs_RS08410 PF00672 HAMP domain dqs_RS08410 PF00989 PAS fold dqs_RS08410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS08415 PF14437 MafB19-like deaminase dqs_RS08420 PF01476 LysM domain dqs_RS08420 PF03734 L,D-transpeptidase catalytic domain dqs_RS08440 PF01571 Aminomethyltransferase folate-binding domain dqs_RS08445 PF02618 YceG-like family dqs_RS08450 PF02223 Thymidylate kinase dqs_RS08455 PF09115 DNA polymerase III, delta subunit, C terminal dqs_RS08465 PF01026 TatD related DNase dqs_RS08480 PF00850 Histone deacetylase domain dqs_RS08485 PF08379 Bacterial transglutaminase-like N-terminal region dqs_RS08485 PF01841 Transglutaminase-like superfamily dqs_RS08490 PF04168 A predicted alpha-helical domain with a conserved ER motif. dqs_RS08490 PF14403 Circularly permuted ATP-grasp type 2 dqs_RS08500 PF01546 Peptidase family M20/M25/M40 dqs_RS08500 PF07687 Peptidase dimerisation domain dqs_RS08510 PF04055 Radical SAM superfamily dqs_RS08510 PF06463 Molybdenum Cofactor Synthesis C dqs_RS08520 PF13654 AAA domain dqs_RS08520 PF05362 Lon protease (S16) C-terminal proteolytic domain dqs_RS08535 PF00155 Aminotransferase class I and II dqs_RS08540 PF04851 Type III restriction enzyme, res subunit dqs_RS08540 PF12344 Ultra-violet resistance protein B dqs_RS08540 PF00271 Helicase conserved C-terminal domain dqs_RS08540 PF02151 UvrB/uvrC motif dqs_RS08540 PF17757 UvrB interaction domain dqs_RS08545 PF01451 Low molecular weight phosphotyrosine protein phosphatase dqs_RS08550 PF12111 Polyribonucleotide phosphorylase C terminal dqs_RS08550 PF00575 S1 RNA binding domain dqs_RS08550 PF10150 Ribonuclease E/G family dqs_RS08555 PF00849 RNA pseudouridylate synthase dqs_RS08555 PF01479 S4 domain dqs_RS08560 PF13419 Haloacid dehalogenase-like hydrolase dqs_RS08570 PF01343 Peptidase family S49 dqs_RS08575 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_RS08580 PF02545 Maf-like protein dqs_RS08585 PF02620 Large ribosomal RNA subunit accumulation protein YceD dqs_RS08590 PF01783 Ribosomal L32p protein family dqs_RS08595 PF02504 Fatty acid synthesis protein dqs_RS08600 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III dqs_RS08600 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal dqs_RS08605 PF00698 Acyl transferase domain dqs_RS08615 PF00550 Phosphopantetheine attachment site dqs_RS08620 PF02801 Beta-ketoacyl synthase, C-terminal domain dqs_RS08620 PF00109 Beta-ketoacyl synthase, N-terminal domain dqs_RS08630 PF00890 FAD binding domain dqs_RS08630 PF02910 Fumarate reductase flavoprotein C-term dqs_RS08635 PF08281 Sigma-70, region 4 dqs_RS08635 PF04542 Sigma-70 region 2 dqs_RS08645 PF03888 MucB/RseB N-terminal domain dqs_RS08645 PF17188 MucB/RseB C-terminal domain dqs_RS08655 PF13180 PDZ domain dqs_RS08665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS08665 PF03466 LysR substrate binding domain dqs_RS08675 PF03401 Tripartite tricarboxylate transporter family receptor dqs_RS08680 PF03144 Elongation factor Tu domain 2 dqs_RS08680 PF00009 Elongation factor Tu GTP binding domain dqs_RS08680 PF00679 Elongation factor G C-terminus dqs_RS08680 PF06421 GTP-binding protein LepA C-terminus dqs_RS08685 PF10502 Signal peptidase, peptidase S26 dqs_RS08695 PF00035 Double-stranded RNA binding motif dqs_RS08695 PF14622 Ribonuclease-III-like dqs_RS08700 PF01926 50S ribosome-binding GTPase dqs_RS08700 PF07650 KH domain dqs_RS08705 PF02565 Recombination protein O C terminal dqs_RS08705 PF11967 Recombination protein O N terminal dqs_RS08710 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ dqs_RS08715 PF01648 4'-phosphopantetheinyl transferase superfamily dqs_RS08720 PF00933 Glycosyl hydrolase family 3 N terminal domain dqs_RS08725 PF02151 UvrB/uvrC motif dqs_RS08725 PF08459 UvrC Helix-hairpin-helix N-terminal dqs_RS08725 PF01541 GIY-YIG catalytic domain dqs_RS08730 PF01066 CDP-alcohol phosphatidyltransferase dqs_RS08845 PF00589 Phage integrase family dqs_RS08855 PF03776 Septum formation topological specificity factor MinE dqs_RS08860 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain dqs_RS08865 PF05209 Septum formation inhibitor MinC, N-terminal domain dqs_RS08865 PF03775 Septum formation inhibitor MinC, C-terminal domain dqs_RS08870 PF01430 Hsp33 protein dqs_RS08875 PF03960 ArsC family dqs_RS08880 PF16921 Tex protein YqgF-like domain dqs_RS08880 PF17674 HHH domain dqs_RS08880 PF00575 S1 RNA binding domain dqs_RS08880 PF09371 Tex-like protein N-terminal domain dqs_RS08885 PF01263 Aldose 1-epimerase dqs_RS08890 PF00583 Acetyltransferase (GNAT) family dqs_RS08890 PF13380 CoA binding domain dqs_RS08890 PF13607 Succinyl-CoA ligase like flavodoxin domain dqs_RS08895 PF00989 PAS fold dqs_RS08895 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS08895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS08905 PF00581 Rhodanese-like domain dqs_RS08910 PF00586 AIR synthase related protein, N-terminal domain dqs_RS08910 PF02769 AIR synthase related protein, C-terminal domain dqs_RS08915 PF13472 GDSL-like Lipase/Acylhydrolase family dqs_RS08920 PF00005 ABC transporter dqs_RS08930 PF00793 DAHP synthetase I family dqs_RS08940 PF03707 Bacterial signalling protein N terminal repeat dqs_RS08940 PF00563 EAL domain dqs_RS08940 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS08945 PF01544 CorA-like Mg2+ transporter protein dqs_RS08950 PF02559 CarD-like/TRCF domain dqs_RS08950 PF03461 TRCF domain dqs_RS08950 PF00271 Helicase conserved C-terminal domain dqs_RS08950 PF00270 DEAD/DEAH box helicase dqs_RS08950 PF17757 UvrB interaction domain dqs_RS08975 PF13545 Crp-like helix-turn-helix domain dqs_RS08975 PF00027 Cyclic nucleotide-binding domain dqs_RS08980 PF01871 AMMECR1 dqs_RS08985 PF01875 Memo-like protein dqs_RS08990 PF13194 Domain of unknown function (DUF4010) dqs_RS08995 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase dqs_RS09000 PF02542 YgbB family dqs_RS09025 PF13291 ACT domain dqs_RS09025 PF04607 Region found in RelA / SpoT proteins dqs_RS09025 PF02824 TGS domain dqs_RS09030 PF13089 Polyphosphate kinase N-terminal domain dqs_RS09030 PF17941 Polyphosphate kinase C-terminal domain 1 dqs_RS09030 PF13090 Polyphosphate kinase C-terminal domain 2 dqs_RS09030 PF02503 Polyphosphate kinase middle domain dqs_RS09035 PF02541 Ppx/GppA phosphatase family dqs_RS09040 PF02405 Permease MlaE dqs_RS09045 PF00005 ABC transporter dqs_RS09050 PF02470 MlaD protein dqs_RS09050 PF03886 ABC-type transport auxiliary lipoprotein component dqs_RS09060 PF00501 AMP-binding enzyme dqs_RS09060 PF13193 AMP-binding enzyme C-terminal domain dqs_RS09065 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS09070 PF01026 TatD related DNase dqs_RS09075 PF00440 Bacterial regulatory proteins, tetR family dqs_RS09075 PF08361 MAATS-type transcriptional repressor, C-terminal region dqs_RS09080 PF01012 Electron transfer flavoprotein domain dqs_RS09085 PF00766 Electron transfer flavoprotein FAD-binding domain dqs_RS09085 PF01012 Electron transfer flavoprotein domain dqs_RS09095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_RS09095 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_RS09095 PF12806 Acetyl-CoA dehydrogenase C-terminal like dqs_RS09095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_RS09110 PF03795 YCII-related domain dqs_RS09115 PF04279 Intracellular septation protein A dqs_RS09125 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS09125 PF00672 HAMP domain dqs_RS09125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS09130 PF00486 Transcriptional regulatory protein, C terminal dqs_RS09130 PF00072 Response regulator receiver domain dqs_RS09140 PF00814 Glycoprotease family dqs_RS09145 PF00583 Acetyltransferase (GNAT) family dqs_RS09150 PF03167 Uracil DNA glycosylase superfamily dqs_RS09155 PF07690 Major Facilitator Superfamily dqs_RS09160 PF03466 LysR substrate binding domain dqs_RS09160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS09165 PF18073 Rubredoxin metal binding domain dqs_RS09200 PF10017 Histidine-specific methyltransferase, SAM-dependent dqs_RS09210 PF02806 Alpha amylase, C-terminal all-beta domain dqs_RS09210 PF00128 Alpha amylase, catalytic domain dqs_RS09210 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) dqs_RS09215 PF00128 Alpha amylase, catalytic domain dqs_RS09215 PF11896 Domain of unknown function (DUF3416) dqs_RS09220 PF00128 Alpha amylase, catalytic domain dqs_RS09220 PF16657 Maltogenic Amylase, C-terminal domain dqs_RS09225 PF09411 Lipid A 3-O-deacylase (PagL) dqs_RS09255 PF11339 Protein of unknown function (DUF3141) dqs_RS09260 PF03860 Domain of Unknown Function (DUF326) dqs_RS09280 PF00106 short chain dehydrogenase dqs_RS09285 PF02735 Ku70/Ku80 beta-barrel domain dqs_RS09290 PF01068 ATP dependent DNA ligase domain dqs_RS09290 PF04679 ATP dependent DNA ligase C terminal region dqs_RS09290 PF13298 DNA polymerase Ligase (LigD) dqs_RS09310 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain dqs_RS09310 PF02951 Prokaryotic glutathione synthetase, N-terminal domain dqs_RS09325 PF00571 CBS domain dqs_RS09350 PF13091 PLD-like domain dqs_RS09365 PF02790 Cytochrome C oxidase subunit II, transmembrane domain dqs_RS09365 PF00116 Cytochrome C oxidase subunit II, periplasmic domain dqs_RS09365 PF00034 Cytochrome c dqs_RS09370 PF00115 Cytochrome C and Quinol oxidase polypeptide I dqs_RS09385 PF00106 short chain dehydrogenase dqs_RS09395 PF01594 AI-2E family transporter dqs_RS09400 PF13180 PDZ domain dqs_RS09410 PF07043 Protein of unknown function (DUF1328) dqs_RS09415 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS09440 PF01654 Cytochrome bd terminal oxidase subunit I dqs_RS09445 PF02322 Cytochrome bd terminal oxidase subunit II dqs_RS09470 PF01510 N-acetylmuramoyl-L-alanine amidase dqs_RS09490 PF13091 PLD-like domain dqs_RS09490 PF13396 Phospholipase_D-nuclease N-terminal dqs_RS09500 PF00534 Glycosyl transferases group 1 dqs_RS09500 PF13439 Glycosyltransferase Family 4 dqs_RS09505 PF01569 PAP2 superfamily dqs_RS09515 PF13439 Glycosyltransferase Family 4 dqs_RS09515 PF00534 Glycosyl transferases group 1 dqs_RS09525 PF04963 Sigma-54 factor, core binding domain dqs_RS09525 PF04552 Sigma-54, DNA binding domain dqs_RS09525 PF00309 Sigma-54 factor, Activator interacting domain (AID) dqs_RS09540 PF15887 Putative zinc-binding metallo-peptidase dqs_RS09540 PF10005 zinc-ribbon domain dqs_RS09545 PF00128 Alpha amylase, catalytic domain dqs_RS09545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) dqs_RS09555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) dqs_RS09555 PF00128 Alpha amylase, catalytic domain dqs_RS09555 PF02806 Alpha amylase, C-terminal all-beta domain dqs_RS09560 PF00483 Nucleotidyl transferase dqs_RS09565 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) dqs_RS09565 PF00128 Alpha amylase, catalytic domain dqs_RS09565 PF11941 Domain of unknown function (DUF3459) dqs_RS09570 PF02446 4-alpha-glucanotransferase dqs_RS09575 PF02685 Glucokinase dqs_RS09580 PF08323 Starch synthase catalytic domain dqs_RS09580 PF00534 Glycosyl transferases group 1 dqs_RS09585 PF01370 NAD dependent epimerase/dehydratase family dqs_RS09595 PF00535 Glycosyl transferase family 2 dqs_RS09595 PF02709 N-terminal domain of galactosyltransferase dqs_RS09600 PF16861 Carbamoyltransferase C-terminus dqs_RS09600 PF02543 Carbamoyltransferase N-terminus dqs_RS09605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) dqs_RS09620 PF13439 Glycosyltransferase Family 4 dqs_RS09620 PF00534 Glycosyl transferases group 1 dqs_RS09630 PF04239 Protein of unknown function (DUF421) dqs_RS09635 PF00072 Response regulator receiver domain dqs_RS09635 PF02954 Bacterial regulatory protein, Fis family dqs_RS09635 PF00158 Sigma-54 interaction domain dqs_RS09660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS09660 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS09665 PF03631 Virulence factor BrkB dqs_RS09680 PF00664 ABC transporter transmembrane region dqs_RS09680 PF00005 ABC transporter dqs_RS09690 PF02308 MgtC family dqs_RS09695 PF18146 Damage-inducible protein CinA KH domain dqs_RS09695 PF00994 Probable molybdopterin binding domain dqs_RS09695 PF02464 Competence-damaged protein dqs_RS09705 PF16363 GDP-mannose 4,6 dehydratase dqs_RS09715 PF00175 Oxidoreductase NAD-binding domain dqs_RS09715 PF00042 Globin dqs_RS09715 PF00970 Oxidoreductase FAD-binding domain dqs_RS09725 PF07715 TonB-dependent Receptor Plug Domain dqs_RS09725 PF00593 TonB dependent receptor dqs_RS09745 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS09750 PF03466 LysR substrate binding domain dqs_RS09750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS09760 PF07044 Protein of unknown function (DUF1329) dqs_RS09780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS09780 PF00672 HAMP domain dqs_RS09780 PF17200 Single Cache domain 2 dqs_RS09785 PF00158 Sigma-54 interaction domain dqs_RS09785 PF02954 Bacterial regulatory protein, Fis family dqs_RS09785 PF02830 V4R domain dqs_RS09785 PF06505 Activator of aromatic catabolism dqs_RS09790 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS09795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_RS09800 PF06099 Phenol hydroxylase subunit dqs_RS09805 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_RS09810 PF02406 MmoB/DmpM family dqs_RS09815 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_RS09815 PF04945 YHS domain dqs_RS09820 PF04663 Phenol hydroxylase conserved region dqs_RS09825 PF00175 Oxidoreductase NAD-binding domain dqs_RS09825 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS09825 PF00970 Oxidoreductase FAD-binding domain dqs_RS09840 PF00171 Aldehyde dehydrogenase family dqs_RS09845 PF01557 Fumarylacetoacetate (FAA) hydrolase family dqs_RS09855 PF01361 Tautomerase enzyme dqs_RS09860 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation dqs_RS09860 PF01118 Semialdehyde dehydrogenase, NAD binding domain dqs_RS09865 PF07836 DmpG-like communication domain dqs_RS09865 PF00682 HMGL-like dqs_RS09870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_RS09930 PF00849 RNA pseudouridylate synthase dqs_RS09960 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase dqs_RS09965 PF00483 Nucleotidyl transferase dqs_RS09970 PF04321 RmlD substrate binding domain dqs_RS09975 PF16363 GDP-mannose 4,6 dehydratase dqs_RS09985 PF08447 PAS fold dqs_RS09985 PF08448 PAS fold dqs_RS09985 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS09985 PF00563 EAL domain dqs_RS09985 PF13426 PAS domain dqs_RS09985 PF05231 MASE1 dqs_RS10000 PF00005 ABC transporter dqs_RS10015 PF01593 Flavin containing amine oxidoreductase dqs_RS10020 PF00246 Zinc carboxypeptidase dqs_RS10020 PF18027 Cytosolic carboxypeptidase N-terminal domain dqs_RS10025 PF03883 Peroxide stress protein YaaA dqs_RS10030 PF00202 Aminotransferase class-III dqs_RS10035 PF00155 Aminotransferase class I and II dqs_RS10040 PF12697 Alpha/beta hydrolase family dqs_RS10045 PF08241 Methyltransferase domain dqs_RS10055 PF00588 SpoU rRNA Methylase family dqs_RS10055 PF08032 RNA 2'-O ribose methyltransferase substrate binding dqs_RS10065 PF01351 Ribonuclease HII dqs_RS10070 PF02684 Lipid-A-disaccharide synthetase dqs_RS10075 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_RS10075 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 dqs_RS10080 PF07977 FabA-like domain dqs_RS10085 PF14602 Hexapeptide repeat of succinyl-transferase dqs_RS10085 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD dqs_RS10085 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_RS10095 PF07244 Surface antigen variable number repeat dqs_RS10095 PF01103 Surface antigen dqs_RS10100 PF13180 PDZ domain dqs_RS10100 PF17820 PDZ domain dqs_RS10100 PF02163 Peptidase family M50 dqs_RS10105 PF13288 DXP reductoisomerase C-terminal domain dqs_RS10105 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase dqs_RS10105 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain dqs_RS10115 PF01255 Putative undecaprenyl diphosphate synthase dqs_RS10120 PF01765 Ribosome recycling factor dqs_RS10125 PF00696 Amino acid kinase family dqs_RS10130 PF00889 Elongation factor TS dqs_RS10135 PF00318 Ribosomal protein S2 dqs_RS10140 PF00557 Metallopeptidase family M24 dqs_RS10145 PF08335 GlnD PII-uridylyltransferase dqs_RS10145 PF01966 HD domain dqs_RS10150 PF03350 Uncharacterized protein family, UPF0114 dqs_RS10160 PF02954 Bacterial regulatory protein, Fis family dqs_RS10160 PF00072 Response regulator receiver domain dqs_RS10160 PF00158 Sigma-54 interaction domain dqs_RS10165 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS10165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS10165 PF02743 Cache domain dqs_RS10180 PF16868 NMT1-like family dqs_RS10185 PF01266 FAD dependent oxidoreductase dqs_RS10190 PF00171 Aldehyde dehydrogenase family dqs_RS10195 PF01012 Electron transfer flavoprotein domain dqs_RS10195 PF00766 Electron transfer flavoprotein FAD-binding domain dqs_RS10200 PF01012 Electron transfer flavoprotein domain dqs_RS10205 PF02515 CoA-transferase family III dqs_RS10210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_RS10210 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_RS10210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_RS10215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS10215 PF03466 LysR substrate binding domain dqs_RS10225 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS10240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_RS10240 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_RS10240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_RS10245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_RS10245 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_RS10245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_RS10250 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS10255 PF00106 short chain dehydrogenase dqs_RS10260 PF01494 FAD binding domain dqs_RS10265 PF01047 MarR family dqs_RS10270 PF14525 AraC-binding-like domain dqs_RS10270 PF12833 Helix-turn-helix domain dqs_RS10285 PF01613 Flavin reductase like domain dqs_RS10290 PF05661 Protein of unknown function (DUF808) dqs_RS10295 PF05199 GMC oxidoreductase dqs_RS10295 PF00732 GMC oxidoreductase dqs_RS10305 PF01613 Flavin reductase like domain dqs_RS10310 PF00296 Luciferase-like monooxygenase dqs_RS10315 PF12833 Helix-turn-helix domain dqs_RS10315 PF14525 AraC-binding-like domain dqs_RS10320 PF01568 Molydopterin dinucleotide binding domain dqs_RS10320 PF00384 Molybdopterin oxidoreductase dqs_RS10320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_RS10325 PF13247 4Fe-4S dicluster domain dqs_RS10365 PF01425 Amidase dqs_RS10370 PF01425 Amidase dqs_RS10375 PF00561 alpha/beta hydrolase fold dqs_RS10390 PF00175 Oxidoreductase NAD-binding domain dqs_RS10390 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS10390 PF00970 Oxidoreductase FAD-binding domain dqs_RS10395 PF00355 Rieske [2Fe-2S] domain dqs_RS10395 PF11723 Homotrimeric ring hydroxylase dqs_RS10400 PF01613 Flavin reductase like domain dqs_RS10405 PF17885 Styrene monooxygenase A putative substrate binding domain dqs_RS10410 PF12833 Helix-turn-helix domain dqs_RS10415 PF14525 AraC-binding-like domain dqs_RS10415 PF12833 Helix-turn-helix domain dqs_RS10420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_RS10430 PF00561 alpha/beta hydrolase fold dqs_RS10435 PF00392 Bacterial regulatory proteins, gntR family dqs_RS10435 PF07729 FCD domain dqs_RS10445 PF08240 Alcohol dehydrogenase GroES-like domain dqs_RS10445 PF00107 Zinc-binding dehydrogenase dqs_RS10450 PF00682 HMGL-like dqs_RS10450 PF07836 DmpG-like communication domain dqs_RS10455 PF01118 Semialdehyde dehydrogenase, NAD binding domain dqs_RS10455 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation dqs_RS10460 PF01557 Fumarylacetoacetate (FAA) hydrolase family dqs_RS10465 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase dqs_RS10470 PF00561 alpha/beta hydrolase fold dqs_RS10470 PF00364 Biotin-requiring enzyme dqs_RS10475 PF00355 Rieske [2Fe-2S] domain dqs_RS10475 PF11723 Homotrimeric ring hydroxylase dqs_RS10480 PF04199 Putative cyclase dqs_RS10495 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS10500 PF00355 Rieske [2Fe-2S] domain dqs_RS10500 PF00848 Ring hydroxylating alpha subunit (catalytic domain) dqs_RS10505 PF00866 Ring hydroxylating beta subunit dqs_RS10510 PF13193 AMP-binding enzyme C-terminal domain dqs_RS10510 PF00501 AMP-binding enzyme dqs_RS10520 PF00106 short chain dehydrogenase dqs_RS10525 PF04199 Putative cyclase dqs_RS10545 PF00005 ABC transporter dqs_RS10545 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_RS10550 PF00005 ABC transporter dqs_RS10555 PF08546 Ketopantoate reductase PanE/ApbA C terminal dqs_RS10555 PF02558 Ketopantoate reductase PanE/ApbA dqs_RS10560 PF00596 Class II Aldolase and Adducin N-terminal domain dqs_RS10565 PF13193 AMP-binding enzyme C-terminal domain dqs_RS10565 PF00501 AMP-binding enzyme dqs_RS10575 PF01048 Phosphorylase superfamily dqs_RS10580 PF03144 Elongation factor Tu domain 2 dqs_RS10580 PF00679 Elongation factor G C-terminus dqs_RS10580 PF00009 Elongation factor Tu GTP binding domain dqs_RS10585 PF00483 Nucleotidyl transferase dqs_RS10590 PF12826 Helix-hairpin-helix motif dqs_RS10590 PF03120 NAD-dependent DNA ligase OB-fold domain dqs_RS10590 PF01653 NAD-dependent DNA ligase adenylation domain dqs_RS10590 PF03119 NAD-dependent DNA ligase C4 zinc finger domain dqs_RS10590 PF00533 BRCA1 C Terminus (BRCT) domain dqs_RS10600 PF02463 RecF/RecN/SMC N terminal domain dqs_RS10605 PF00155 Aminotransferase class I and II dqs_RS10610 PF14602 Hexapeptide repeat of succinyl-transferase dqs_RS10610 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal dqs_RS10615 PF00437 Type II/IV secretion system protein dqs_RS10620 PF01546 Peptidase family M20/M25/M40 dqs_RS10620 PF07687 Peptidase dimerisation domain dqs_RS10625 PF05175 Methyltransferase small domain dqs_RS10630 PF00072 Response regulator receiver domain dqs_RS10635 PF04384 Iron-sulphur cluster assembly dqs_RS10640 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS10645 PF00012 Hsp70 protein dqs_RS10650 PF07743 HSCB C-terminal oligomerisation domain dqs_RS10655 PF01521 Iron-sulphur cluster biosynthesis dqs_RS10660 PF01592 NifU-like N terminal domain dqs_RS10665 PF00266 Aminotransferase class-V dqs_RS10670 PF00266 Aminotransferase class-V dqs_RS10675 PF02082 Transcriptional regulator dqs_RS10680 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_RS10685 PF00588 SpoU rRNA Methylase family dqs_RS10690 PF00459 Inositol monophosphatase family dqs_RS10700 PF05190 MutS family domain IV dqs_RS10700 PF05192 MutS domain III dqs_RS10700 PF01624 MutS domain I dqs_RS10700 PF05188 MutS domain II dqs_RS10700 PF00488 MutS domain V dqs_RS10710 PF00929 Exonuclease dqs_RS10715 PF00075 RNase H dqs_RS10720 PF08241 Methyltransferase domain dqs_RS10725 PF16123 Hydroxyacylglutathione hydrolase C-terminus dqs_RS10725 PF00753 Metallo-beta-lactamase superfamily dqs_RS10730 PF00196 Bacterial regulatory proteins, luxR family dqs_RS10730 PF00072 Response regulator receiver domain dqs_RS10735 PF00563 EAL domain dqs_RS10735 PF01590 GAF domain dqs_RS10735 PF00360 Phytochrome region dqs_RS10735 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS10740 PF01464 Transglycosylase SLT domain dqs_RS10740 PF01476 LysM domain dqs_RS10745 PF00005 ABC transporter dqs_RS10745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region dqs_RS10750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase dqs_RS10755 PF00578 AhpC/TSA family dqs_RS10760 PF00717 Peptidase S24-like dqs_RS10760 PF01726 LexA DNA binding domain dqs_RS10770 PF01554 MatE dqs_RS10775 PF03960 ArsC family dqs_RS10800 PF00004 ATPase family associated with various cellular activities (AAA) dqs_RS10800 PF05362 Lon protease (S16) C-terminal proteolytic domain dqs_RS10800 PF02190 ATP-dependent protease La (LON) substrate-binding domain dqs_RS10805 PF10431 C-terminal, D2-small domain, of ClpB protein dqs_RS10805 PF07724 AAA domain (Cdc48 subfamily) dqs_RS10805 PF06689 ClpX C4-type zinc finger dqs_RS10810 PF00574 Clp protease dqs_RS10815 PF05697 Bacterial trigger factor protein (TF) dqs_RS10815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase dqs_RS10815 PF05698 Bacterial trigger factor protein (TF) C-terminus dqs_RS10820 PF08298 PrkA AAA domain dqs_RS10820 PF06798 PrkA serine protein kinase C-terminal domain dqs_RS10825 PF04285 Protein of unknown function (DUF444) dqs_RS10830 PF04293 SpoVR like protein dqs_RS10835 PF01256 Carbohydrate kinase dqs_RS10835 PF03853 YjeF-related protein N-terminus dqs_RS10840 PF00072 Response regulator receiver domain dqs_RS10850 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain dqs_RS10850 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain dqs_RS10855 PF00291 Pyridoxal-phosphate dependent enzyme dqs_RS10855 PF14821 Threonine synthase N terminus dqs_RS10860 PF01842 ACT domain dqs_RS10860 PF00742 Homoserine dehydrogenase dqs_RS10860 PF03447 Homoserine dehydrogenase, NAD binding domain dqs_RS10865 PF00155 Aminotransferase class I and II dqs_RS10880 PF01050 Mannose-6-phosphate isomerase dqs_RS10880 PF00483 Nucleotidyl transferase dqs_RS10885 PF00196 Bacterial regulatory proteins, luxR family dqs_RS10895 PF08334 Type II secretion system (T2SS), protein G dqs_RS10895 PF07963 Prokaryotic N-terminal methylation motif dqs_RS10900 PF14245 Type IV pilin PilA dqs_RS10900 PF07963 Prokaryotic N-terminal methylation motif dqs_RS10905 PF03958 Bacterial type II/III secretion system short domain dqs_RS10905 PF00263 Bacterial type II and III secretion system protein dqs_RS10930 PF00437 Type II/IV secretion system protein dqs_RS10935 PF00482 Type II secretion system (T2SS), protein F dqs_RS10940 PF07963 Prokaryotic N-terminal methylation motif dqs_RS10940 PF08334 Type II secretion system (T2SS), protein G dqs_RS10945 PF01464 Transglycosylase SLT domain dqs_RS10945 PF01551 Peptidase family M23 dqs_RS10945 PF10145 Phage-related minor tail protein dqs_RS10955 PF00202 Aminotransferase class-III dqs_RS10980 PF01258 Prokaryotic dksA/traR C4-type zinc finger dqs_RS10985 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain dqs_RS10985 PF03725 3' exoribonuclease family, domain 2 dqs_RS10985 PF01138 3' exoribonuclease family, domain 1 dqs_RS10985 PF00575 S1 RNA binding domain dqs_RS10985 PF00013 KH domain dqs_RS10990 PF00312 Ribosomal protein S15 dqs_RS10995 PF09157 Pseudouridine synthase II TruB, C-terminal dqs_RS10995 PF01509 TruB family pseudouridylate synthase (N terminal domain) dqs_RS10995 PF16198 tRNA pseudouridylate synthase B C-terminal domain dqs_RS11000 PF02033 Ribosome-binding factor A dqs_RS11005 PF11987 Translation-initiation factor 2 dqs_RS11005 PF08364 Bacterial translation initiation factor IF-2 associated region dqs_RS11005 PF00009 Elongation factor Tu GTP binding domain dqs_RS11005 PF04760 Translation initiation factor IF-2, N-terminal region dqs_RS11010 PF08529 NusA N-terminal domain dqs_RS11010 PF13184 NusA-like KH domain dqs_RS11015 PF17384 RimP C-terminal SH3 domain dqs_RS11015 PF02576 RimP N-terminal domain dqs_RS11020 PF01479 S4 domain dqs_RS11020 PF00849 RNA pseudouridylate synthase dqs_RS11025 PF04079 Segregation and condensation complex subunit ScpB dqs_RS11030 PF02616 Segregation and condensation protein ScpA dqs_RS11035 PF02163 Peptidase family M50 dqs_RS11040 PF01300 Telomere recombination dqs_RS11045 PF02811 PHP domain dqs_RS11065 PF00171 Aldehyde dehydrogenase family dqs_RS11070 PF01926 50S ribosome-binding GTPase dqs_RS11075 PF00313 'Cold-shock' DNA-binding domain dqs_RS11080 PF00270 DEAD/DEAH box helicase dqs_RS11080 PF03880 DbpA RNA binding domain dqs_RS11080 PF00271 Helicase conserved C-terminal domain dqs_RS11090 PF01636 Phosphotransferase enzyme family dqs_RS11100 PF07152 YaeQ protein dqs_RS11110 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS11110 PF17158 Membrane-associated sensor, integral membrane domain dqs_RS11130 PF00004 ATPase family associated with various cellular activities (AAA) dqs_RS11130 PF05362 Lon protease (S16) C-terminal proteolytic domain dqs_RS11130 PF02190 ATP-dependent protease La (LON) substrate-binding domain dqs_RS11135 PF01227 GTP cyclohydrolase I dqs_RS11145 PF01384 Phosphate transporter family dqs_RS11155 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ dqs_RS11160 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_RS11175 PF00877 NlpC/P60 family dqs_RS11180 PF00571 CBS domain dqs_RS11185 PF04977 Septum formation initiator dqs_RS11190 PF03952 Enolase, N-terminal domain dqs_RS11190 PF00113 Enolase, C-terminal TIM barrel domain dqs_RS11195 PF00793 DAHP synthetase I family dqs_RS11200 PF06418 CTP synthase N-terminus dqs_RS11200 PF00117 Glutamine amidotransferase class-I dqs_RS11210 PF07995 Glucose / Sorbosone dehydrogenase dqs_RS11215 PF13193 AMP-binding enzyme C-terminal domain dqs_RS11215 PF00501 AMP-binding enzyme dqs_RS11220 PF03061 Thioesterase superfamily dqs_RS11260 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal dqs_RS11260 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain dqs_RS11260 PF02769 AIR synthase related protein, C-terminal domain dqs_RS11265 PF01569 PAP2 superfamily dqs_RS11275 PF00535 Glycosyl transferase family 2 dqs_RS11280 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase dqs_RS11285 PF01569 PAP2 superfamily dqs_RS11300 PF01476 LysM domain dqs_RS11300 PF08525 Opacity-associated protein A N-terminal motif dqs_RS11300 PF01551 Peptidase family M23 dqs_RS11305 PF02896 PEP-utilising enzyme, TIM barrel domain dqs_RS11305 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain dqs_RS11305 PF00391 PEP-utilising enzyme, mobile domain dqs_RS11310 PF03618 Kinase/pyrophosphorylase dqs_RS11320 PF01641 SelR domain dqs_RS11325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS11325 PF16591 Helical bimodular sensor domain dqs_RS11325 PF00672 HAMP domain dqs_RS11330 PF00108 Thiolase, N-terminal domain dqs_RS11330 PF02803 Thiolase, C-terminal domain dqs_RS11335 PF17113 Regulatory signalling modulator protein AmpE dqs_RS11335 PF03186 CobD/Cbib protein dqs_RS11340 PF00293 NUDIX domain dqs_RS11370 PF07963 Prokaryotic N-terminal methylation motif dqs_RS11370 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor dqs_RS11385 PF04461 Protein of unknown function (DUF520) dqs_RS11390 PF06865 Pyrimidine/purine nucleoside phosphorylase dqs_RS11400 PF00764 Arginosuccinate synthase dqs_RS11405 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain dqs_RS11405 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain dqs_RS11410 PF00202 Aminotransferase class-III dqs_RS11420 PF01649 Ribosomal protein S20 dqs_RS11425 PF03023 Lipid II flippase MurJ dqs_RS11435 PF01053 Cys/Met metabolism PLP-dependent enzyme dqs_RS11455 PF00578 AhpC/TSA family dqs_RS11460 PF02562 PhoH-like protein dqs_RS11460 PF13638 PIN domain dqs_RS11465 PF08447 PAS fold dqs_RS11465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS11470 PF00072 Response regulator receiver domain dqs_RS11485 PF00877 NlpC/P60 family dqs_RS11495 PF13416 Bacterial extracellular solute-binding protein dqs_RS11500 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS11505 PF08402 TOBE domain dqs_RS11505 PF00005 ABC transporter dqs_RS11510 PF03588 Leucyl/phenylalanyl-tRNA protein transferase dqs_RS11515 PF04376 Arginine-tRNA-protein transferase, N terminus dqs_RS11515 PF04377 Arginine-tRNA-protein transferase, C terminus dqs_RS11520 PF01180 Dihydroorotate dehydrogenase dqs_RS11525 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS11525 PF01799 [2Fe-2S] binding domain dqs_RS11530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase dqs_RS11530 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain dqs_RS11540 PF00005 ABC transporter dqs_RS11545 PF02653 Branched-chain amino acid transport system / permease component dqs_RS11550 PF02653 Branched-chain amino acid transport system / permease component dqs_RS11555 PF07715 TonB-dependent Receptor Plug Domain dqs_RS11555 PF00593 TonB dependent receptor dqs_RS11570 PF01891 Cobalt uptake substrate-specific transmembrane region dqs_RS11580 PF00005 ABC transporter dqs_RS11585 PF01979 Amidohydrolase family dqs_RS11590 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 dqs_RS11595 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS11595 PF00563 EAL domain dqs_RS11595 PF03707 Bacterial signalling protein N terminal repeat dqs_RS11605 PF03707 Bacterial signalling protein N terminal repeat dqs_RS11605 PF00563 EAL domain dqs_RS11605 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS11610 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_RS11625 PF00483 Nucleotidyl transferase dqs_RS11630 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain dqs_RS11630 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain dqs_RS11630 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain dqs_RS11650 PF00150 Cellulase (glycosyl hydrolase family 5) dqs_RS11655 PF13439 Glycosyltransferase Family 4 dqs_RS11655 PF00534 Glycosyl transferases group 1 dqs_RS11670 PF13614 AAA domain dqs_RS11700 PF02397 Bacterial sugar transferase dqs_RS11715 PF00171 Aldehyde dehydrogenase family dqs_RS11730 PF03176 MMPL family dqs_RS11740 PF07044 Protein of unknown function (DUF1329) dqs_RS11750 PF02975 Methylamine dehydrogenase, L chain dqs_RS11755 PF00578 AhpC/TSA family dqs_RS11760 PF07291 Methylamine utilisation protein MauE dqs_RS11765 PF06433 Methylamine dehydrogenase heavy chain (MADH) dqs_RS11775 PF07729 FCD domain dqs_RS11775 PF00392 Bacterial regulatory proteins, gntR family dqs_RS11785 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS11790 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS11795 PF00005 ABC transporter dqs_RS11810 PF01145 SPFH domain / Band 7 family dqs_RS11815 PF08447 PAS fold dqs_RS11815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS11815 PF13426 PAS domain dqs_RS11825 PF02705 K+ potassium transporter dqs_RS11830 PF07859 alpha/beta hydrolase fold dqs_RS11840 PF07722 Peptidase C26 dqs_RS11845 PF04107 Glutamate-cysteine ligase family 2(GCS2) dqs_RS11860 PF00581 Rhodanese-like domain dqs_RS11870 PF00258 Flavodoxin dqs_RS11880 PF01323 DSBA-like thioredoxin domain dqs_RS11885 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_RS11890 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_RS11905 PF01966 HD domain dqs_RS11915 PF02308 MgtC family dqs_RS11920 PF13230 Glutamine amidotransferases class-II dqs_RS11930 PF12833 Helix-turn-helix domain dqs_RS11930 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain dqs_RS11930 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain dqs_RS11930 PF02805 Metal binding domain of Ada dqs_RS11935 PF13532 2OG-Fe(II) oxygenase superfamily dqs_RS11950 PF01329 Pterin 4 alpha carbinolamine dehydratase dqs_RS11965 PF18158 Adaptive response protein AidB N-terminal domain dqs_RS11965 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_RS11965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_RS11975 PF00437 Type II/IV secretion system protein dqs_RS11975 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain dqs_RS11985 PF07690 Major Facilitator Superfamily dqs_RS11995 PF00891 O-methyltransferase domain dqs_RS12000 PF00128 Alpha amylase, catalytic domain dqs_RS12000 PF16657 Maltogenic Amylase, C-terminal domain dqs_RS12010 PF00005 ABC transporter dqs_RS12010 PF06472 ABC transporter transmembrane region 2 dqs_RS12015 PF02685 Glucokinase dqs_RS12030 PF00664 ABC transporter transmembrane region dqs_RS12030 PF00005 ABC transporter dqs_RS12060 PF00534 Glycosyl transferases group 1 dqs_RS12060 PF13439 Glycosyltransferase Family 4 dqs_RS12065 PF13439 Glycosyltransferase Family 4 dqs_RS12065 PF00534 Glycosyl transferases group 1 dqs_RS12070 PF01522 Polysaccharide deacetylase dqs_RS12080 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS12080 PF00563 EAL domain dqs_RS12080 PF03707 Bacterial signalling protein N terminal repeat dqs_RS12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS12085 PF03466 LysR substrate binding domain dqs_RS12090 PF00158 Sigma-54 interaction domain dqs_RS12100 PF01618 MotA/TolQ/ExbB proton channel family dqs_RS12105 PF02472 Biopolymer transport protein ExbD/TolR dqs_RS12115 PF13533 Biotin-lipoyl like dqs_RS12120 PF00873 AcrB/AcrD/AcrF family dqs_RS12125 PF00873 AcrB/AcrD/AcrF family dqs_RS12130 PF02321 Outer membrane efflux protein dqs_RS12140 PF00595 PDZ domain dqs_RS12140 PF03572 Peptidase family S41 dqs_RS12140 PF17804 Tail specific protease N-terminal domain dqs_RS12140 PF11818 C-terminal domain of tail specific protease (DUF3340) dqs_RS12150 PF01322 Cytochrome C' dqs_RS12155 PF01738 Dienelactone hydrolase family dqs_RS12165 PF00034 Cytochrome c dqs_RS12190 PF00593 TonB dependent receptor dqs_RS12190 PF07715 TonB-dependent Receptor Plug Domain dqs_RS12220 PF01451 Low molecular weight phosphotyrosine protein phosphatase dqs_RS12225 PF01758 Sodium Bile acid symporter family dqs_RS12230 PF06953 Arsenical resistance operon trans-acting repressor ArsD dqs_RS12235 PF02374 Anion-transporting ATPase dqs_RS12240 PF01425 Amidase dqs_RS12250 PF14552 Tautomerase enzyme dqs_RS12255 PF03466 LysR substrate binding domain dqs_RS12255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS12260 PF07859 alpha/beta hydrolase fold dqs_RS12265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS12265 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS12265 PF09456 RcsC Alpha-Beta-Loop (ABL) dqs_RS12265 PF00072 Response regulator receiver domain dqs_RS12280 PF00166 Chaperonin 10 Kd subunit dqs_RS12285 PF00118 TCP-1/cpn60 chaperonin family dqs_RS12290 PF03466 LysR substrate binding domain dqs_RS12290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS12310 PF04143 Sulphur transport dqs_RS12315 PF00581 Rhodanese-like domain dqs_RS12330 PF03881 Fructosamine kinase dqs_RS12335 PF00535 Glycosyl transferase family 2 dqs_RS12350 PF04205 FMN-binding domain dqs_RS12375 PF01970 Tripartite tricarboxylate transporter TctA family dqs_RS12380 PF05995 Cysteine dioxygenase type I dqs_RS12385 PF02558 Ketopantoate reductase PanE/ApbA dqs_RS12385 PF08546 Ketopantoate reductase PanE/ApbA C terminal dqs_RS12390 PF00596 Class II Aldolase and Adducin N-terminal domain dqs_RS12395 PF03401 Tripartite tricarboxylate transporter family receptor dqs_RS12400 PF00296 Luciferase-like monooxygenase dqs_RS12405 PF03401 Tripartite tricarboxylate transporter family receptor dqs_RS12410 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS12425 PF01970 Tripartite tricarboxylate transporter TctA family dqs_RS12430 PF07331 Tripartite tricarboxylate transporter TctB family dqs_RS12435 PF01568 Molydopterin dinucleotide binding domain dqs_RS12435 PF00384 Molybdopterin oxidoreductase dqs_RS12445 PF00005 ABC transporter dqs_RS12450 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS12455 PF09084 NMT1/THI5 like dqs_RS12460 PF00296 Luciferase-like monooxygenase dqs_RS12465 PF09084 NMT1/THI5 like dqs_RS12470 PF03459 TOBE domain dqs_RS12480 PF09084 NMT1/THI5 like dqs_RS12485 PF00005 ABC transporter dqs_RS12490 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS12500 PF14535 AMP-binding enzyme C-terminal domain dqs_RS12500 PF00501 AMP-binding enzyme dqs_RS12520 PF00291 Pyridoxal-phosphate dependent enzyme dqs_RS12525 PF07715 TonB-dependent Receptor Plug Domain dqs_RS12525 PF00593 TonB dependent receptor dqs_RS12535 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS12535 PF01627 Hpt domain dqs_RS12535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS12535 PF00672 HAMP domain dqs_RS12535 PF00072 Response regulator receiver domain dqs_RS12535 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_RS12540 PF00563 EAL domain dqs_RS12540 PF00360 Phytochrome region dqs_RS12540 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS12540 PF01590 GAF domain dqs_RS12550 PF02566 OsmC-like protein dqs_RS12560 PF01037 Lrp/AsnC ligand binding domain dqs_RS12565 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS12570 PF00474 Sodium:solute symporter family dqs_RS12575 PF00929 Exonuclease dqs_RS12580 PF00072 Response regulator receiver domain dqs_RS12580 PF00486 Transcriptional regulatory protein, C terminal dqs_RS12585 PF00672 HAMP domain dqs_RS12585 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS12585 PF18698 Histidine kinase sensor domain dqs_RS12585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS12585 PF00989 PAS fold dqs_RS12595 PF00501 AMP-binding enzyme dqs_RS12595 PF13193 AMP-binding enzyme C-terminal domain dqs_RS12595 PF16177 Acetyl-coenzyme A synthetase N-terminus dqs_RS12615 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain dqs_RS12615 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain dqs_RS12620 PF03466 LysR substrate binding domain dqs_RS12620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS12625 PF07883 Cupin domain dqs_RS12630 PF01557 Fumarylacetoacetate (FAA) hydrolase family dqs_RS12635 PF01494 FAD binding domain dqs_RS12640 PF13417 Glutathione S-transferase, N-terminal domain dqs_RS12645 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_RS12650 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component dqs_RS12650 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_RS12655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_RS12670 PF01361 Tautomerase enzyme dqs_RS12680 PF07836 DmpG-like communication domain dqs_RS12680 PF00682 HMGL-like dqs_RS12685 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation dqs_RS12685 PF01118 Semialdehyde dehydrogenase, NAD binding domain dqs_RS12690 PF00106 short chain dehydrogenase dqs_RS12700 PF00171 Aldehyde dehydrogenase family dqs_RS12705 PF03928 Haem-degrading dqs_RS12710 PF07729 FCD domain dqs_RS12710 PF00392 Bacterial regulatory proteins, gntR family dqs_RS12715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_RS12720 PF00175 Oxidoreductase NAD-binding domain dqs_RS12720 PF00970 Oxidoreductase FAD-binding domain dqs_RS12720 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS12725 PF04663 Phenol hydroxylase conserved region dqs_RS12730 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_RS12730 PF04945 YHS domain dqs_RS12735 PF02406 MmoB/DmpM family dqs_RS12740 PF02332 Methane/Phenol/Toluene Hydroxylase dqs_RS12745 PF06099 Phenol hydroxylase subunit dqs_RS12750 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS12755 PF00158 Sigma-54 interaction domain dqs_RS12755 PF02830 V4R domain dqs_RS12755 PF06505 Activator of aromatic catabolism dqs_RS12755 PF02954 Bacterial regulatory protein, Fis family dqs_RS12760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS12760 PF00072 Response regulator receiver domain dqs_RS12760 PF07494 Two component regulator propeller dqs_RS12760 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS12760 PF12833 Helix-turn-helix domain dqs_RS12760 PF07495 Y_Y_Y domain dqs_RS12765 PF01494 FAD binding domain dqs_RS12770 PF00072 Response regulator receiver domain dqs_RS12775 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_RS12775 PF00072 Response regulator receiver domain dqs_RS12775 PF01627 Hpt domain dqs_RS12775 PF00989 PAS fold dqs_RS12775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS12775 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS12780 PF00106 short chain dehydrogenase dqs_RS12800 PF00486 Transcriptional regulatory protein, C terminal dqs_RS12800 PF00072 Response regulator receiver domain dqs_RS12805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS12805 PF00989 PAS fold dqs_RS12805 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS12810 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS12810 PF00672 HAMP domain dqs_RS12810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS12815 PF00196 Bacterial regulatory proteins, luxR family dqs_RS12815 PF00072 Response regulator receiver domain dqs_RS12865 PF00392 Bacterial regulatory proteins, gntR family dqs_RS12865 PF00155 Aminotransferase class I and II dqs_RS12875 PF01070 FMN-dependent dehydrogenase dqs_RS12890 PF00171 Aldehyde dehydrogenase family dqs_RS12895 PF00205 Thiamine pyrophosphate enzyme, central domain dqs_RS12895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain dqs_RS12895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain dqs_RS12900 PF03466 LysR substrate binding domain dqs_RS12900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS12905 PF12801 4Fe-4S binding domain dqs_RS12905 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase dqs_RS12905 PF13746 4Fe-4S dicluster domain dqs_RS12910 PF02954 Bacterial regulatory protein, Fis family dqs_RS12910 PF00158 Sigma-54 interaction domain dqs_RS12910 PF01590 GAF domain dqs_RS12925 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS12925 PF18113 Rubredoxin binding C-terminal domain dqs_RS12930 PF00005 ABC transporter dqs_RS12935 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS12940 PF00005 ABC transporter dqs_RS12945 PF02560 Cyanate lyase C-terminal domain dqs_RS12955 PF00753 Metallo-beta-lactamase superfamily dqs_RS12980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS12980 PF00672 HAMP domain dqs_RS12980 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS12980 PF00072 Response regulator receiver domain dqs_RS12980 PF01627 Hpt domain dqs_RS12980 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_RS12990 PF00072 Response regulator receiver domain dqs_RS13000 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain dqs_RS13000 PF00391 PEP-utilising enzyme, mobile domain dqs_RS13005 PF00440 Bacterial regulatory proteins, tetR family dqs_RS13005 PF17754 MftR C-terminal domain dqs_RS13015 PF02080 TrkA-C domain dqs_RS13015 PF03600 Citrate transporter dqs_RS13020 PF00085 Thioredoxin dqs_RS13025 PF00766 Electron transfer flavoprotein FAD-binding domain dqs_RS13025 PF01012 Electron transfer flavoprotein domain dqs_RS13030 PF01012 Electron transfer flavoprotein domain dqs_RS13035 PF01575 MaoC like domain dqs_RS13040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_RS13040 PF12806 Acetyl-CoA dehydrogenase C-terminal like dqs_RS13040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_RS13040 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_RS13050 PF00106 short chain dehydrogenase dqs_RS13055 PF02803 Thiolase, C-terminal domain dqs_RS13055 PF00108 Thiolase, N-terminal domain dqs_RS13060 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS13065 PF00501 AMP-binding enzyme dqs_RS13065 PF13193 AMP-binding enzyme C-terminal domain dqs_RS13075 PF00005 ABC transporter dqs_RS13080 PF00005 ABC transporter dqs_RS13080 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_RS13090 PF17932 Tetracyclin repressor-like, C-terminal domain dqs_RS13090 PF00440 Bacterial regulatory proteins, tetR family dqs_RS13095 PF16925 Tetracyclin repressor-like, C-terminal domain dqs_RS13095 PF00440 Bacterial regulatory proteins, tetR family dqs_RS13125 PF06276 Ferric iron reductase FhuF-like transporter dqs_RS13125 PF04183 IucA / IucC family dqs_RS13140 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) dqs_RS13145 PF00593 TonB dependent receptor dqs_RS13145 PF07715 TonB-dependent Receptor Plug Domain dqs_RS13160 PF00355 Rieske [2Fe-2S] domain dqs_RS13165 PF13577 SnoaL-like domain dqs_RS13170 PF00848 Ring hydroxylating alpha subunit (catalytic domain) dqs_RS13170 PF00355 Rieske [2Fe-2S] domain dqs_RS13175 PF00970 Oxidoreductase FAD-binding domain dqs_RS13175 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS13175 PF00175 Oxidoreductase NAD-binding domain dqs_RS13180 PF03466 LysR substrate binding domain dqs_RS13180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS13185 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_RS13200 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase dqs_RS13210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS13210 PF03466 LysR substrate binding domain dqs_RS13215 PF03707 Bacterial signalling protein N terminal repeat dqs_RS13215 PF00563 EAL domain dqs_RS13215 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS13225 PF00067 Cytochrome P450 dqs_RS13230 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS13235 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS13235 PF14759 Reductase C-terminal dqs_RS13240 PF00753 Metallo-beta-lactamase superfamily dqs_RS13245 PF00117 Glutamine amidotransferase class-I dqs_RS13255 PF08884 Flagellin D3 domain dqs_RS13255 PF00669 Bacterial flagellin N-terminal helical region dqs_RS13255 PF00700 Bacterial flagellin C-terminal helical region dqs_RS13265 PF00248 Aldo/keto reductase family dqs_RS13270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold dqs_RS13275 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase dqs_RS13280 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit dqs_RS13285 PF04909 Amidohydrolase dqs_RS13295 PF03737 Aldolase/RraA dqs_RS13300 PF04909 Amidohydrolase dqs_RS13305 PF07690 Major Facilitator Superfamily dqs_RS13310 PF04303 PrpF protein dqs_RS13315 PF07690 Major Facilitator Superfamily dqs_RS13320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS13320 PF03466 LysR substrate binding domain dqs_RS13325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS13325 PF00672 HAMP domain dqs_RS13325 PF12729 Four helix bundle sensory module for signal transduction dqs_RS13335 PF12627 Probable RNA and SrmB- binding site of polymerase A dqs_RS13335 PF01743 Poly A polymerase head domain dqs_RS13335 PF01966 HD domain dqs_RS13350 PF00437 Type II/IV secretion system protein dqs_RS13405 PF00034 Cytochrome c dqs_RS13405 PF03150 Di-haem cytochrome c peroxidase dqs_RS13415 PF08281 Sigma-70, region 4 dqs_RS13415 PF04542 Sigma-70 region 2 dqs_RS13435 PF08448 PAS fold dqs_RS13435 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS13435 PF00563 EAL domain dqs_RS13440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS13440 PF03466 LysR substrate binding domain dqs_RS13445 PF00529 HlyD membrane-fusion protein of T1SS dqs_RS13445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_RS13450 PF00873 AcrB/AcrD/AcrF family dqs_RS13455 PF02321 Outer membrane efflux protein dqs_RS13475 PF12833 Helix-turn-helix domain dqs_RS13480 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_RS13480 PF00072 Response regulator receiver domain dqs_RS13480 PF00672 HAMP domain dqs_RS13480 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS13480 PF01627 Hpt domain dqs_RS13480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS13485 PF05173 Dihydrodipicolinate reductase, C-terminus dqs_RS13485 PF01113 Dihydrodipicolinate reductase, N-terminus dqs_RS13490 PF04355 SmpA / OmlA family dqs_RS13495 PF01475 Ferric uptake regulator family dqs_RS13500 PF02463 RecF/RecN/SMC N terminal domain dqs_RS13505 PF01513 ATP-NAD kinase dqs_RS13510 PF01628 HrcA protein C terminal domain dqs_RS13510 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding dqs_RS13515 PF00762 Ferrochelatase dqs_RS13520 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV dqs_RS13530 PF00069 Protein kinase domain dqs_RS13530 PF03793 PASTA domain dqs_RS13535 PF01979 Amidohydrolase family dqs_RS13540 PF00691 OmpA family dqs_RS13605 PF03466 LysR substrate binding domain dqs_RS13605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS13615 PF01176 Translation initiation factor 1A / IF-1 dqs_RS13620 PF00313 'Cold-shock' DNA-binding domain dqs_RS13625 PF00892 EamA-like transporter family dqs_RS13640 PF08546 Ketopantoate reductase PanE/ApbA C terminal dqs_RS13640 PF02558 Ketopantoate reductase PanE/ApbA dqs_RS13645 PF00596 Class II Aldolase and Adducin N-terminal domain dqs_RS13655 PF00593 TonB dependent receptor dqs_RS13655 PF07715 TonB-dependent Receptor Plug Domain dqs_RS13665 PF00563 EAL domain dqs_RS13665 PF13426 PAS domain dqs_RS13665 PF08447 PAS fold dqs_RS13665 PF08448 PAS fold dqs_RS13665 PF05231 MASE1 dqs_RS13665 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS13690 PF13419 Haloacid dehalogenase-like hydrolase dqs_RS13695 PF13411 MerR HTH family regulatory protein dqs_RS13700 PF01209 ubiE/COQ5 methyltransferase family dqs_RS13715 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS13715 PF00072 Response regulator receiver domain dqs_RS13720 PF11965 Domain of unknown function (DUF3479) dqs_RS13720 PF02514 CobN/Magnesium Chelatase dqs_RS13735 PF13649 Methyltransferase domain dqs_RS13750 PF13419 Haloacid dehalogenase-like hydrolase dqs_RS13755 PF01738 Dienelactone hydrolase family dqs_RS13765 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS13785 PF01384 Phosphate transporter family dqs_RS13800 PF02694 Uncharacterised BCR, YnfA/UPF0060 family dqs_RS13805 PF00175 Oxidoreductase NAD-binding domain dqs_RS13805 PF00970 Oxidoreductase FAD-binding domain dqs_RS13820 PF01161 Phosphatidylethanolamine-binding protein dqs_RS13835 PF00578 AhpC/TSA family dqs_RS13835 PF10417 C-terminal domain of 1-Cys peroxiredoxin dqs_RS13855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family dqs_RS13860 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_RS13870 PF00072 Response regulator receiver domain dqs_RS13870 PF00196 Bacterial regulatory proteins, luxR family dqs_RS13875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS13875 PF00989 PAS fold dqs_RS13875 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS13890 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS13890 PF03707 Bacterial signalling protein N terminal repeat dqs_RS13890 PF00563 EAL domain dqs_RS13900 PF05981 CreA protein dqs_RS13915 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS13920 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS13925 PF00700 Bacterial flagellin C-terminal helical region dqs_RS13925 PF00669 Bacterial flagellin N-terminal helical region dqs_RS13930 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family dqs_RS13945 PF00535 Glycosyl transferase family 2 dqs_RS13955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain dqs_RS13955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain dqs_RS13960 PF00465 Iron-containing alcohol dehydrogenase dqs_RS13965 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase dqs_RS13970 PF00535 Glycosyl transferase family 2 dqs_RS13970 PF00534 Glycosyl transferases group 1 dqs_RS13980 PF00700 Bacterial flagellin C-terminal helical region dqs_RS13980 PF00669 Bacterial flagellin N-terminal helical region dqs_RS13985 PF03646 FlaG protein dqs_RS13990 PF07195 Flagellar hook-associated protein 2 C-terminus dqs_RS13990 PF02465 Flagellar hook-associated protein 2 N-terminus dqs_RS13995 PF02561 Flagellar protein FliS dqs_RS14010 PF01312 FlhB HrpN YscU SpaS Family dqs_RS14015 PF07317 Flagellar regulator YcgR dqs_RS14015 PF07238 PilZ domain dqs_RS14020 PF00563 EAL domain dqs_RS14020 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS14020 PF03707 Bacterial signalling protein N terminal repeat dqs_RS14025 PF02049 Flagellar hook-basal body complex protein FliE dqs_RS14030 PF00072 Response regulator receiver domain dqs_RS14030 PF00158 Sigma-54 interaction domain dqs_RS14030 PF02954 Bacterial regulatory protein, Fis family dqs_RS14035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS14035 PF13188 PAS domain dqs_RS14035 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS14040 PF01514 Secretory protein of YscJ/FliF family dqs_RS14040 PF08345 Flagellar M-ring protein C-terminal dqs_RS14045 PF14841 FliG middle domain dqs_RS14045 PF01706 FliG C-terminal domain dqs_RS14045 PF14842 FliG N-terminal domain dqs_RS14055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain dqs_RS14055 PF18269 T3SS EscN ATPase C-terminal domain dqs_RS14075 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term dqs_RS14075 PF02154 Flagellar motor switch protein FliM dqs_RS14080 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term dqs_RS14080 PF16973 Flagellar motor switch protein FliN N-terminal dqs_RS14085 PF04347 Flagellar biosynthesis protein, FliO dqs_RS14090 PF00813 FliP family dqs_RS14095 PF01313 Bacterial export proteins, family 3 dqs_RS14100 PF01311 Bacterial export proteins, family 1 dqs_RS14110 PF00669 Bacterial flagellin N-terminal helical region dqs_RS14115 PF06429 Flagellar basal body rod FlgEFG protein C-terminal dqs_RS14115 PF00460 Flagella basal body rod protein dqs_RS14120 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase dqs_RS14120 PF10135 Rod binding protein dqs_RS14125 PF02119 Flagellar P-ring protein dqs_RS14130 PF02107 Flagellar L-ring protein dqs_RS14135 PF00460 Flagella basal body rod protein dqs_RS14135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal dqs_RS14140 PF00460 Flagella basal body rod protein dqs_RS14140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal dqs_RS14145 PF07559 Flagellar basal body protein FlaE dqs_RS14145 PF00460 Flagella basal body rod protein dqs_RS14145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal dqs_RS14155 PF00460 Flagella basal body rod protein dqs_RS14155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal dqs_RS14160 PF00460 Flagella basal body rod protein dqs_RS14165 PF17656 FlgA N-terminal domain dqs_RS14165 PF13144 Chaperone for flagella basal body P-ring formation dqs_RS14185 PF00486 Transcriptional regulatory protein, C terminal dqs_RS14185 PF00072 Response regulator receiver domain dqs_RS14190 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS14190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS14190 PF00672 HAMP domain dqs_RS14200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS14200 PF07730 Histidine kinase dqs_RS14200 PF05231 MASE1 dqs_RS14205 PF00196 Bacterial regulatory proteins, luxR family dqs_RS14205 PF00072 Response regulator receiver domain dqs_RS14210 PF01266 FAD dependent oxidoreductase dqs_RS14210 PF16901 C-terminal domain of alpha-glycerophosphate oxidase dqs_RS14215 PF00370 FGGY family of carbohydrate kinases, N-terminal domain dqs_RS14215 PF02782 FGGY family of carbohydrate kinases, C-terminal domain dqs_RS14220 PF00892 EamA-like transporter family dqs_RS14230 PF00581 Rhodanese-like domain dqs_RS14235 PF01177 Asp/Glu/Hydantoin racemase dqs_RS14240 PF00579 tRNA synthetases class I (W and Y) dqs_RS14240 PF01479 S4 domain dqs_RS14245 PF01551 Peptidase family M23 dqs_RS14245 PF08525 Opacity-associated protein A N-terminal motif dqs_RS14245 PF01476 LysM domain dqs_RS14250 PF01521 Iron-sulphur cluster biosynthesis dqs_RS14255 PF00380 Ribosomal protein S9/S16 dqs_RS14260 PF00572 Ribosomal protein L13 dqs_RS14270 PF03232 Ubiquinone biosynthesis protein COQ7 dqs_RS14280 PF00293 NUDIX domain dqs_RS14285 PF03129 Anticodon binding domain dqs_RS14285 PF04073 Aminoacyl-tRNA editing domain dqs_RS14285 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) dqs_RS14290 PF01464 Transglycosylase SLT domain dqs_RS14290 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain dqs_RS14300 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS14300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS14310 PF00072 Response regulator receiver domain dqs_RS14310 PF00158 Sigma-54 interaction domain dqs_RS14315 PF04055 Radical SAM superfamily dqs_RS14335 PF01063 Amino-transferase class IV dqs_RS14350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II dqs_RS14350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III dqs_RS14350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I dqs_RS14350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain dqs_RS14360 PF02272 DHHA1 domain dqs_RS14360 PF01411 tRNA synthetases class II (A) dqs_RS14360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain dqs_RS14365 PF01923 Cobalamin adenosyltransferase dqs_RS14370 PF02579 Dinitrogenase iron-molybdenum cofactor dqs_RS14370 PF04055 Radical SAM superfamily dqs_RS14380 PF01593 Flavin containing amine oxidoreductase dqs_RS14385 PF00664 ABC transporter transmembrane region dqs_RS14385 PF00005 ABC transporter dqs_RS14390 PF00817 impB/mucB/samB family dqs_RS14390 PF11799 impB/mucB/samB family C-terminal domain dqs_RS14395 PF02646 RmuC family dqs_RS14400 PF00793 DAHP synthetase I family dqs_RS14410 PF00174 Oxidoreductase molybdopterin binding domain dqs_RS14415 PF01794 Ferric reductase like transmembrane component dqs_RS14420 PF00994 Probable molybdopterin binding domain dqs_RS14425 PF04751 Protein of unknown function (DUF615) dqs_RS14430 PF01523 Putative modulator of DNA gyrase dqs_RS14435 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_RS14440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component dqs_RS14450 PF00300 Histidine phosphatase superfamily (branch 1) dqs_RS14455 PF13492 GAF domain dqs_RS14455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS14455 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS14455 PF02702 Osmosensitive K+ channel His kinase sensor domain dqs_RS14455 PF13493 Domain of unknown function (DUF4118) dqs_RS14460 PF00486 Transcriptional regulatory protein, C terminal dqs_RS14460 PF00072 Response regulator receiver domain dqs_RS14465 PF00037 4Fe-4S binding domain dqs_RS14470 PF01012 Electron transfer flavoprotein domain dqs_RS14475 PF01012 Electron transfer flavoprotein domain dqs_RS14475 PF00766 Electron transfer flavoprotein FAD-binding domain dqs_RS14480 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS14490 PF00464 Serine hydroxymethyltransferase dqs_RS14495 PF03477 ATP cone domain dqs_RS14500 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region dqs_RS14500 PF01872 RibD C-terminal domain dqs_RS14505 PF00899 ThiF family dqs_RS14515 PF03572 Peptidase family S41 dqs_RS14515 PF13180 PDZ domain dqs_RS14520 PF01551 Peptidase family M23 dqs_RS14525 PF00300 Histidine phosphatase superfamily (branch 1) dqs_RS14535 PF00581 Rhodanese-like domain dqs_RS14540 PF00462 Glutaredoxin dqs_RS14545 PF02556 Preprotein translocase subunit SecB dqs_RS14555 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus dqs_RS14555 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus dqs_RS14560 PF00588 SpoU rRNA Methylase family dqs_RS14565 PF00156 Phosphoribosyl transferase domain dqs_RS14570 PF06968 Biotin and Thiamin Synthesis associated domain dqs_RS14570 PF04055 Radical SAM superfamily dqs_RS14575 PF08241 Methyltransferase domain dqs_RS14590 PF00490 Delta-aminolevulinic acid dehydratase dqs_RS14595 PF01926 50S ribosome-binding GTPase dqs_RS14600 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_RS14605 PF04305 Protein of unknown function (DUF455) dqs_RS14610 PF00994 Probable molybdopterin binding domain dqs_RS14610 PF03453 MoeA N-terminal region (domain I and II) dqs_RS14610 PF03454 MoeA C-terminal region (domain IV) dqs_RS14615 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) dqs_RS14620 PF01895 PhoU domain dqs_RS14625 PF04362 Bacterial Fe(2+) trafficking dqs_RS14630 PF00563 EAL domain dqs_RS14630 PF03707 Bacterial signalling protein N terminal repeat dqs_RS14630 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS14635 PF00583 Acetyltransferase (GNAT) family dqs_RS14635 PF00696 Amino acid kinase family dqs_RS14640 PF03976 Polyphosphate kinase 2 (PPK2) dqs_RS14645 PF04452 RNA methyltransferase dqs_RS14650 PF00459 Inositol monophosphatase family dqs_RS14660 PF00485 Phosphoribulokinase / Uridine kinase family dqs_RS14665 PF02780 Transketolase, C-terminal domain dqs_RS14665 PF02779 Transketolase, pyrimidine binding domain dqs_RS14665 PF00456 Transketolase, thiamine diphosphate binding domain dqs_RS14670 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain dqs_RS14670 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain dqs_RS14680 PF00162 Phosphoglycerate kinase dqs_RS14695 PF02887 Pyruvate kinase, alpha/beta domain dqs_RS14695 PF00224 Pyruvate kinase, barrel domain dqs_RS14700 PF01116 Fructose-bisphosphate aldolase class-II dqs_RS14705 PF13360 PQQ-like domain dqs_RS14705 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_RS14715 PF01590 GAF domain dqs_RS14715 PF02954 Bacterial regulatory protein, Fis family dqs_RS14715 PF00158 Sigma-54 interaction domain dqs_RS14730 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS14730 PF00072 Response regulator receiver domain dqs_RS14735 PF07690 Major Facilitator Superfamily dqs_RS14735 PF00083 Sugar (and other) transporter dqs_RS14745 PF00171 Aldehyde dehydrogenase family dqs_RS14755 PF05114 Protein of unknown function (DUF692) dqs_RS14765 PF07681 DoxX dqs_RS14770 PF04542 Sigma-70 region 2 dqs_RS14770 PF08281 Sigma-70, region 4 dqs_RS14785 PF13519 von Willebrand factor type A domain dqs_RS14785 PF07584 Aerotolerance regulator N-terminal dqs_RS14790 PF01882 Protein of unknown function DUF58 dqs_RS14795 PF07726 ATPase family associated with various cellular activities (AAA) dqs_RS14795 PF17863 AAA lid domain dqs_RS14800 PF00595 PDZ domain dqs_RS14805 PF00092 von Willebrand factor type A domain dqs_RS14805 PF07584 Aerotolerance regulator N-terminal dqs_RS14815 PF03707 Bacterial signalling protein N terminal repeat dqs_RS14815 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS14815 PF00563 EAL domain dqs_RS14820 PF03466 LysR substrate binding domain dqs_RS14820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS14825 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase dqs_RS14830 PF01292 Prokaryotic cytochrome b561 dqs_RS14840 PF04264 YceI-like domain dqs_RS14850 PF01259 SAICAR synthetase dqs_RS14870 PF01432 Peptidase family M3 dqs_RS14875 PF03960 ArsC family dqs_RS14880 PF00672 HAMP domain dqs_RS14880 PF00909 Ammonium Transporter Family dqs_RS14895 PF13545 Crp-like helix-turn-helix domain dqs_RS14895 PF00027 Cyclic nucleotide-binding domain dqs_RS14905 PF00398 Ribosomal RNA adenine dimethylase dqs_RS14910 PF04166 Pyridoxal phosphate biosynthetic protein PdxA dqs_RS14915 PF09312 SurA N-terminal domain dqs_RS14915 PF00639 PPIC-type PPIASE domain dqs_RS14920 PF03968 OstA-like protein dqs_RS14920 PF04453 LPS transport system D dqs_RS14925 PF01636 Phosphotransferase enzyme family dqs_RS14930 PF00483 Nucleotidyl transferase dqs_RS14935 PF00557 Metallopeptidase family M24 dqs_RS14935 PF05195 Aminopeptidase P, N-terminal domain dqs_RS14940 PF01494 FAD binding domain dqs_RS14945 PF01207 Dihydrouridine synthase (Dus) dqs_RS14950 PF02954 Bacterial regulatory protein, Fis family dqs_RS14955 PF02142 MGS-like domain dqs_RS14955 PF01808 AICARFT/IMPCHase bienzyme dqs_RS14960 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain dqs_RS14960 PF02843 Phosphoribosylglycinamide synthetase, C domain dqs_RS14960 PF02844 Phosphoribosylglycinamide synthetase, N domain dqs_RS14965 PF01218 Coproporphyrinogen III oxidase dqs_RS14970 PF00916 Sulfate permease family dqs_RS14970 PF01740 STAS domain dqs_RS14975 PF00886 Ribosomal protein S16 dqs_RS14980 PF01782 RimM N-terminal domain dqs_RS14980 PF05239 PRC-barrel domain dqs_RS14985 PF01746 tRNA (Guanine-1)-methyltransferase dqs_RS14990 PF01245 Ribosomal protein L19 dqs_RS15000 PF03739 Lipopolysaccharide export system permease LptF/LptG dqs_RS15005 PF02789 Cytosol aminopeptidase family, N-terminal domain dqs_RS15005 PF00883 Cytosol aminopeptidase family, catalytic domain dqs_RS15020 PF10458 Valyl tRNA synthetase tRNA binding arm dqs_RS15020 PF08264 Anticodon-binding domain of tRNA dqs_RS15020 PF00133 tRNA synthetases class I (I, L, M and V) dqs_RS15035 PF00005 ABC transporter dqs_RS15040 PF13533 Biotin-lipoyl like dqs_RS15045 PF02321 Outer membrane efflux protein dqs_RS15070 PF05567 Neisseria PilC beta-propeller domain dqs_RS15075 PF07963 Prokaryotic N-terminal methylation motif dqs_RS15075 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor dqs_RS15080 PF01206 Sulfurtransferase TusA dqs_RS15085 PF01435 Peptidase family M48 dqs_RS15090 PF01967 MoaC family dqs_RS15100 PF00005 ABC transporter dqs_RS15105 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS15130 PF04324 BFD-like [2Fe-2S] binding domain dqs_RS15130 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain dqs_RS15130 PF18267 Rubredoxin NAD+ reductase C-terminal domain dqs_RS15130 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS15135 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 dqs_RS15135 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain dqs_RS15145 PF01590 GAF domain dqs_RS15145 PF02954 Bacterial regulatory protein, Fis family dqs_RS15145 PF00158 Sigma-54 interaction domain dqs_RS15150 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_RS15165 PF01292 Prokaryotic cytochrome b561 dqs_RS15170 PF00034 Cytochrome c dqs_RS15180 PF00171 Aldehyde dehydrogenase family dqs_RS15185 PF01590 GAF domain dqs_RS15185 PF02954 Bacterial regulatory protein, Fis family dqs_RS15185 PF00158 Sigma-54 interaction domain dqs_RS15210 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS15210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS15210 PF00672 HAMP domain dqs_RS15215 PF00072 Response regulator receiver domain dqs_RS15215 PF00486 Transcriptional regulatory protein, C terminal dqs_RS15230 PF00529 HlyD membrane-fusion protein of T1SS dqs_RS15230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_RS15235 PF00873 AcrB/AcrD/AcrF family dqs_RS15240 PF00873 AcrB/AcrD/AcrF family dqs_RS15245 PF04945 YHS domain dqs_RS15275 PF08281 Sigma-70, region 4 dqs_RS15275 PF04542 Sigma-70 region 2 dqs_RS15285 PF09828 Chromate resistance exported protein dqs_RS15290 PF17954 Quercetinase C-terminal cupin domain dqs_RS15290 PF02678 Pirin dqs_RS15295 PF07681 DoxX dqs_RS15300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS15300 PF03466 LysR substrate binding domain dqs_RS15305 PF03358 NADPH-dependent FMN reductase dqs_RS15315 PF00196 Bacterial regulatory proteins, luxR family dqs_RS15315 PF00072 Response regulator receiver domain dqs_RS15320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS15320 PF07730 Histidine kinase dqs_RS15320 PF05231 MASE1 dqs_RS15325 PF01011 PQQ enzyme repeat dqs_RS15325 PF13360 PQQ-like domain dqs_RS15340 PF13360 PQQ-like domain dqs_RS15340 PF01011 PQQ enzyme repeat dqs_RS15360 PF07730 Histidine kinase dqs_RS15360 PF05231 MASE1 dqs_RS15360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS15365 PF00196 Bacterial regulatory proteins, luxR family dqs_RS15365 PF00072 Response regulator receiver domain dqs_RS15370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS15370 PF00672 HAMP domain dqs_RS15400 PF03358 NADPH-dependent FMN reductase dqs_RS15405 PF00141 Peroxidase dqs_RS15410 PF00857 Isochorismatase family dqs_RS15415 PF02678 Pirin dqs_RS15415 PF05726 Pirin C-terminal cupin domain dqs_RS15420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS15420 PF03466 LysR substrate binding domain dqs_RS15430 PF00593 TonB dependent receptor dqs_RS15430 PF07715 TonB-dependent Receptor Plug Domain dqs_RS15445 PF07715 TonB-dependent Receptor Plug Domain dqs_RS15445 PF00593 TonB dependent receptor dqs_RS15455 PF05951 Bacterial protein of unknown function (DUF882) dqs_RS15460 PF01471 Putative peptidoglycan binding domain dqs_RS15460 PF03734 L,D-transpeptidase catalytic domain dqs_RS15475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS15475 PF03466 LysR substrate binding domain dqs_RS15480 PF01571 Aminomethyltransferase folate-binding domain dqs_RS15480 PF16350 FAD dependent oxidoreductase central domain dqs_RS15480 PF01266 FAD dependent oxidoreductase dqs_RS15480 PF08669 Glycine cleavage T-protein C-terminal barrel domain dqs_RS15485 PF01012 Electron transfer flavoprotein domain dqs_RS15490 PF01012 Electron transfer flavoprotein domain dqs_RS15490 PF00766 Electron transfer flavoprotein FAD-binding domain dqs_RS15495 PF05962 HutD dqs_RS15510 PF00120 Glutamine synthetase, catalytic domain dqs_RS15525 PF01645 Conserved region in glutamate synthase dqs_RS15530 PF00543 Nitrogen regulatory protein P-II dqs_RS15535 PF00909 Ammonium Transporter Family dqs_RS15545 PF13609 Gram-negative porin dqs_RS15560 PF00171 Aldehyde dehydrogenase family dqs_RS15565 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_RS15565 PF13360 PQQ-like domain dqs_RS15570 PF07715 TonB-dependent Receptor Plug Domain dqs_RS15570 PF00593 TonB dependent receptor dqs_RS15580 PF03992 Antibiotic biosynthesis monooxygenase dqs_RS15610 PF02954 Bacterial regulatory protein, Fis family dqs_RS15610 PF00158 Sigma-54 interaction domain dqs_RS15610 PF00072 Response regulator receiver domain dqs_RS15640 PF00384 Molybdopterin oxidoreductase dqs_RS15640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_RS15640 PF12838 4Fe-4S dicluster domain dqs_RS15640 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region dqs_RS15640 PF01568 Molydopterin dinucleotide binding domain dqs_RS15645 PF10531 SLBB domain dqs_RS15645 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region dqs_RS15645 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit dqs_RS15650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_RS15650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_RS15650 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain dqs_RS15655 PF00301 Rubredoxin dqs_RS15660 PF02801 Beta-ketoacyl synthase, C-terminal domain dqs_RS15660 PF14765 Polyketide synthase dehydratase dqs_RS15660 PF00550 Phosphopantetheine attachment site dqs_RS15660 PF08659 KR domain dqs_RS15660 PF00698 Acyl transferase domain dqs_RS15660 PF00109 Beta-ketoacyl synthase, N-terminal domain dqs_RS15660 PF16197 Ketoacyl-synthetase C-terminal extension dqs_RS15660 PF00107 Zinc-binding dehydrogenase dqs_RS15660 PF08240 Alcohol dehydrogenase GroES-like domain dqs_RS15665 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS15680 PF00005 ABC transporter dqs_RS15685 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_RS15685 PF00005 ABC transporter dqs_RS15695 PF02653 Branched-chain amino acid transport system / permease component dqs_RS15710 PF13193 AMP-binding enzyme C-terminal domain dqs_RS15710 PF00501 AMP-binding enzyme dqs_RS15720 PF00171 Aldehyde dehydrogenase family dqs_RS15725 PF01202 Shikimate kinase dqs_RS15730 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS15740 PF00175 Oxidoreductase NAD-binding domain dqs_RS15740 PF00970 Oxidoreductase FAD-binding domain dqs_RS15740 PF00037 4Fe-4S binding domain dqs_RS15745 PF00108 Thiolase, N-terminal domain dqs_RS15745 PF02803 Thiolase, C-terminal domain dqs_RS15755 PF00563 EAL domain dqs_RS15755 PF03707 Bacterial signalling protein N terminal repeat dqs_RS15755 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS15770 PF01037 Lrp/AsnC ligand binding domain dqs_RS15775 PF00682 HMGL-like dqs_RS15780 PF13193 AMP-binding enzyme C-terminal domain dqs_RS15780 PF00501 AMP-binding enzyme dqs_RS15785 PF04480 Protein of unknown function (DUF559) dqs_RS15790 PF02785 Biotin carboxylase C-terminal domain dqs_RS15790 PF00364 Biotin-requiring enzyme dqs_RS15790 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain dqs_RS15790 PF00289 Biotin carboxylase, N-terminal domain dqs_RS15795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_RS15795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_RS15795 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS15800 PF01039 Carboxyl transferase domain dqs_RS15850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain dqs_RS15850 PF02770 Acyl-CoA dehydrogenase, middle domain dqs_RS15850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain dqs_RS15855 PF12833 Helix-turn-helix domain dqs_RS15855 PF02311 AraC-like ligand binding domain dqs_RS15860 PF04247 Invasion gene expression up-regulator, SirB dqs_RS15885 PF00034 Cytochrome c dqs_RS15890 PF00115 Cytochrome C and Quinol oxidase polypeptide I dqs_RS15900 PF07728 AAA domain (dynein-related subfamily) dqs_RS15900 PF08406 CbbQ/NirQ/NorQ C-terminal dqs_RS15910 PF00092 von Willebrand factor type A domain dqs_RS15920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain dqs_RS15920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain dqs_RS15925 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase dqs_RS15925 PF13746 4Fe-4S dicluster domain dqs_RS15925 PF12801 4Fe-4S binding domain dqs_RS15930 PF02082 Transcriptional regulator dqs_RS15935 PF00571 CBS domain dqs_RS15935 PF01769 Divalent cation transporter dqs_RS15935 PF03448 MgtE intracellular N domain dqs_RS15940 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_RS15955 PF05573 NosL dqs_RS15960 PF05573 NosL dqs_RS15965 PF12679 ABC-2 family transporter protein dqs_RS15970 PF00005 ABC transporter dqs_RS15975 PF05048 Periplasmic copper-binding protein (NosD) dqs_RS15985 PF04205 FMN-binding domain dqs_RS15985 PF12801 4Fe-4S binding domain dqs_RS15990 PF18764 Nitrous oxide reductase propeller repeat dqs_RS15990 PF18793 Nitrous oxide reductase propeller repeat 2 dqs_RS15990 PF13473 Cupredoxin-like domain dqs_RS16005 PF01842 ACT domain dqs_RS16005 PF00696 Amino acid kinase family dqs_RS16005 PF13840 ACT domain dqs_RS16020 PF01242 6-pyruvoyl tetrahydropterin synthase dqs_RS16030 PF12795 Mechanosensitive ion channel porin domain dqs_RS16030 PF00924 Mechanosensitive ion channel dqs_RS16030 PF12794 Mechanosensitive ion channel inner membrane domain 1 dqs_RS16035 PF13091 PLD-like domain dqs_RS16040 PF01189 16S rRNA methyltransferase RsmB/F dqs_RS16040 PF01029 NusB family dqs_RS16050 PF00551 Formyl transferase dqs_RS16060 PF08676 MutL C terminal dimerisation domain dqs_RS16060 PF01119 DNA mismatch repair protein, C-terminal domain dqs_RS16070 PF08753 NikR C terminal nickel binding domain dqs_RS16070 PF01402 Ribbon-helix-helix protein, copG family dqs_RS16080 PF01068 ATP dependent DNA ligase domain dqs_RS16080 PF14743 DNA ligase OB-like domain dqs_RS16100 PF00873 AcrB/AcrD/AcrF family dqs_RS16105 PF00529 HlyD membrane-fusion protein of T1SS dqs_RS16105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion dqs_RS16110 PF02769 AIR synthase related protein, C-terminal domain dqs_RS16110 PF00586 AIR synthase related protein, N-terminal domain dqs_RS16115 PF01594 AI-2E family transporter dqs_RS16120 PF00308 Bacterial dnaA protein dqs_RS16130 PF01743 Poly A polymerase head domain dqs_RS16130 PF12626 Polymerase A arginine-rich C-terminus dqs_RS16130 PF12627 Probable RNA and SrmB- binding site of polymerase A dqs_RS16135 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) dqs_RS16145 PF01712 Deoxynucleoside kinase dqs_RS16150 PF02548 Ketopantoate hydroxymethyltransferase dqs_RS16155 PF02569 Pantoate-beta-alanine ligase dqs_RS16160 PF00571 CBS domain dqs_RS16160 PF00478 IMP dehydrogenase / GMP reductase domain dqs_RS16165 PF17432 Domain of unknown function (DUF3458_C) ARM repeats dqs_RS16165 PF11940 Domain of unknown function (DUF3458) Ig-like fold dqs_RS16165 PF01433 Peptidase family M1 domain dqs_RS16175 PF00690 Cation transporter/ATPase, N-terminus dqs_RS16175 PF00689 Cation transporting ATPase, C-terminus dqs_RS16200 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain dqs_RS16200 PF00205 Thiamine pyrophosphate enzyme, central domain dqs_RS16200 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain dqs_RS16205 PF10369 Small subunit of acetolactate synthase dqs_RS16210 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain dqs_RS16210 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain dqs_RS16215 PF01066 CDP-alcohol phosphatidyltransferase dqs_RS16220 PF00072 Response regulator receiver domain dqs_RS16220 PF00486 Transcriptional regulatory protein, C terminal dqs_RS16225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS16225 PF00672 HAMP domain dqs_RS16225 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS16225 PF01627 Hpt domain dqs_RS16225 PF00072 Response regulator receiver domain dqs_RS16240 PF08502 LeuA allosteric (dimerisation) domain dqs_RS16240 PF00682 HMGL-like dqs_RS16250 PF03358 NADPH-dependent FMN reductase dqs_RS16255 PF03631 Virulence factor BrkB dqs_RS16265 PF00829 Ribosomal prokaryotic L21 protein dqs_RS16270 PF01016 Ribosomal L27 protein dqs_RS16275 PF01018 GTP1/OBG dqs_RS16275 PF01926 50S ribosome-binding GTPase dqs_RS16280 PF00696 Amino acid kinase family dqs_RS16280 PF01472 PUA domain dqs_RS16290 PF00501 AMP-binding enzyme dqs_RS16295 PF00550 Phosphopantetheine attachment site dqs_RS16295 PF07993 Male sterility protein dqs_RS16300 PF02390 Putative methyltransferase dqs_RS16310 PF12704 MacB-like periplasmic core domain dqs_RS16310 PF02687 FtsX-like permease family dqs_RS16315 PF12704 MacB-like periplasmic core domain dqs_RS16315 PF02687 FtsX-like permease family dqs_RS16315 PF00005 ABC transporter dqs_RS16320 PF00765 Autoinducer synthase dqs_RS16325 PF16177 Acetyl-coenzyme A synthetase N-terminus dqs_RS16325 PF00501 AMP-binding enzyme dqs_RS16325 PF13193 AMP-binding enzyme C-terminal domain dqs_RS16330 PF01627 Hpt domain dqs_RS16330 PF01584 CheW-like domain dqs_RS16330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS16330 PF00072 Response regulator receiver domain dqs_RS16335 PF00107 Zinc-binding dehydrogenase dqs_RS16345 PF04011 LemA family dqs_RS16355 PF00005 ABC transporter dqs_RS16355 PF16326 ABC transporter C-terminal domain dqs_RS16355 PF12848 ABC transporter dqs_RS16375 PF01551 Peptidase family M23 dqs_RS16375 PF01464 Transglycosylase SLT domain dqs_RS16375 PF10145 Phage-related minor tail protein dqs_RS16380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain dqs_RS16380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain dqs_RS16380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain dqs_RS16390 PF00158 Sigma-54 interaction domain dqs_RS16390 PF02954 Bacterial regulatory protein, Fis family dqs_RS16390 PF00072 Response regulator receiver domain dqs_RS16395 PF08448 PAS fold dqs_RS16395 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS16395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS16395 PF13188 PAS domain dqs_RS16395 PF00072 Response regulator receiver domain dqs_RS16400 PF02397 Bacterial sugar transferase dqs_RS16405 PF01575 MaoC like domain dqs_RS16440 PF00303 Thymidylate synthase dqs_RS16445 PF00186 Dihydrofolate reductase dqs_RS16450 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain dqs_RS16450 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain dqs_RS16450 PF01276 Orn/Lys/Arg decarboxylase, major domain dqs_RS16455 PF00692 dUTPase dqs_RS16460 PF10609 NUBPL iron-transfer P-loop NTPase dqs_RS16465 PF05736 OprF membrane domain dqs_RS16465 PF00691 OmpA family dqs_RS16470 PF01588 Putative tRNA binding domain dqs_RS16470 PF09334 tRNA synthetases class I (M) dqs_RS16475 PF00916 Sulfate permease family dqs_RS16475 PF01740 STAS domain dqs_RS16480 PF00708 Acylphosphatase dqs_RS16485 PF00884 Sulfatase dqs_RS16495 PF14579 Helix-hairpin-helix motif dqs_RS16495 PF02811 PHP domain dqs_RS16495 PF07733 Bacterial DNA polymerase III alpha NTPase domain dqs_RS16495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain dqs_RS16495 PF01336 OB-fold nucleic acid binding domain dqs_RS16500 PF08240 Alcohol dehydrogenase GroES-like domain dqs_RS16500 PF00107 Zinc-binding dehydrogenase dqs_RS16510 PF00390 Malic enzyme, N-terminal domain dqs_RS16510 PF03949 Malic enzyme, NAD binding domain dqs_RS16510 PF01515 Phosphate acetyl/butaryl transferase dqs_RS16515 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family dqs_RS16520 PF13361 UvrD-like helicase C-terminal domain dqs_RS16520 PF00580 UvrD/REP helicase N-terminal domain dqs_RS16530 PF00133 tRNA synthetases class I (I, L, M and V) dqs_RS16530 PF08264 Anticodon-binding domain of tRNA dqs_RS16530 PF09334 tRNA synthetases class I (M) dqs_RS16530 PF13603 Leucyl-tRNA synthetase, Domain 2 dqs_RS16540 PF06144 DNA polymerase III, delta subunit dqs_RS16540 PF14840 Processivity clamp loader gamma complex DNA pol III C-term dqs_RS16545 PF00171 Aldehyde dehydrogenase family dqs_RS16550 PF00589 Phage integrase family dqs_RS16550 PF02899 Phage integrase, N-terminal SAM-like domain dqs_RS16555 PF04073 Aminoacyl-tRNA editing domain dqs_RS16570 PF02660 Glycerol-3-phosphate acyltransferase dqs_RS16575 PF00814 Glycoprotease family dqs_RS16580 PF01165 Ribosomal protein S21 dqs_RS16585 PF10410 DnaB-helicase binding domain of primase dqs_RS16585 PF08278 DNA primase DnaG DnaB-binding dqs_RS16585 PF08275 DNA primase catalytic core, N-terminal domain dqs_RS16585 PF01807 CHC2 zinc finger dqs_RS16590 PF04546 Sigma-70, non-essential region dqs_RS16590 PF03979 Sigma-70 factor, region 1.1 dqs_RS16590 PF04539 Sigma-70 region 3 dqs_RS16590 PF04542 Sigma-70 region 2 dqs_RS16590 PF04545 Sigma-70, region 4 dqs_RS16590 PF00140 Sigma-70 factor, region 1.2 dqs_RS16595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily dqs_RS16615 PF00448 SRP54-type protein, GTPase domain dqs_RS16615 PF02881 SRP54-type protein, helical bundle domain dqs_RS16615 PF02978 Signal peptide binding domain dqs_RS16625 PF00437 Type II/IV secretion system protein dqs_RS16625 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain dqs_RS16630 PF00482 Type II secretion system (T2SS), protein F dqs_RS16635 PF01478 Type IV leader peptidase family dqs_RS16635 PF06750 Bacterial Peptidase A24 N-terminal domain dqs_RS16650 PF00152 tRNA synthetases class II (D, K and N) dqs_RS16650 PF01336 OB-fold nucleic acid binding domain dqs_RS16650 PF02938 GAD domain dqs_RS16655 PF02954 Bacterial regulatory protein, Fis family dqs_RS16655 PF00072 Response regulator receiver domain dqs_RS16655 PF00158 Sigma-54 interaction domain dqs_RS16660 PF00545 ribonuclease dqs_RS16670 PF00011 Hsp20/alpha crystallin family dqs_RS16675 PF00696 Amino acid kinase family dqs_RS16685 PF13193 AMP-binding enzyme C-terminal domain dqs_RS16685 PF00501 AMP-binding enzyme dqs_RS16695 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain dqs_RS16695 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain dqs_RS16730 PF01757 Acyltransferase family dqs_RS16750 PF00535 Glycosyl transferase family 2 dqs_RS16760 PF00534 Glycosyl transferases group 1 dqs_RS16765 PF13439 Glycosyltransferase Family 4 dqs_RS16795 PF13439 Glycosyltransferase Family 4 dqs_RS16795 PF00534 Glycosyl transferases group 1 dqs_RS16800 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain dqs_RS16800 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain dqs_RS16800 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain dqs_RS16810 PF13537 Glutamine amidotransferase domain dqs_RS16810 PF00733 Asparagine synthase dqs_RS16815 PF00534 Glycosyl transferases group 1 dqs_RS16815 PF08323 Starch synthase catalytic domain dqs_RS16820 PF00733 Asparagine synthase dqs_RS16820 PF13537 Glutamine amidotransferase domain dqs_RS16825 PF00534 Glycosyl transferases group 1 dqs_RS16840 PF01522 Polysaccharide deacetylase dqs_RS16845 PF02350 UDP-N-acetylglucosamine 2-epimerase dqs_RS16850 PF13401 AAA domain dqs_RS16850 PF01471 Putative peptidoglycan binding domain dqs_RS16860 PF13614 AAA domain dqs_RS16885 PF00005 ABC transporter dqs_RS16885 PF12704 MacB-like periplasmic core domain dqs_RS16885 PF02687 FtsX-like permease family dqs_RS16895 PF10996 Beta-Casp domain dqs_RS16895 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain dqs_RS16895 PF00753 Metallo-beta-lactamase superfamily dqs_RS16900 PF13609 Gram-negative porin dqs_RS16905 PF00267 Gram-negative porin dqs_RS16910 PF04545 Sigma-70, region 4 dqs_RS16910 PF04542 Sigma-70 region 2 dqs_RS16910 PF00140 Sigma-70 factor, region 1.2 dqs_RS16915 PF02630 SCO1/SenC dqs_RS16920 PF01040 UbiA prenyltransferase family dqs_RS16925 PF02628 Cytochrome oxidase assembly protein dqs_RS16945 PF00510 Cytochrome c oxidase subunit III dqs_RS16955 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 dqs_RS16960 PF00115 Cytochrome C and Quinol oxidase polypeptide I dqs_RS16965 PF02790 Cytochrome C oxidase subunit II, transmembrane domain dqs_RS16965 PF00116 Cytochrome C oxidase subunit II, periplasmic domain dqs_RS16970 PF01467 Cytidylyltransferase-like dqs_RS16975 PF02690 Na+/Pi-cotransporter dqs_RS16980 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain dqs_RS16980 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain dqs_RS16985 PF02607 B12 binding domain dqs_RS16985 PF13411 MerR HTH family regulatory protein dqs_RS16990 PF01593 Flavin containing amine oxidoreductase dqs_RS17020 PF00106 short chain dehydrogenase dqs_RS17030 PF08240 Alcohol dehydrogenase GroES-like domain dqs_RS17030 PF00107 Zinc-binding dehydrogenase dqs_RS17035 PF00270 DEAD/DEAH box helicase dqs_RS17035 PF16124 RecQ zinc-binding dqs_RS17035 PF09382 RQC domain dqs_RS17035 PF00271 Helicase conserved C-terminal domain dqs_RS17035 PF00570 HRDC domain dqs_RS17040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase dqs_RS17045 PF01625 Peptide methionine sulfoxide reductase dqs_RS17055 PF00218 Indole-3-glycerol phosphate synthase dqs_RS17060 PF02885 Glycosyl transferase family, helical bundle domain dqs_RS17060 PF00591 Glycosyl transferase family, a/b domain dqs_RS17065 PF00117 Glutamine amidotransferase class-I dqs_RS17070 PF00425 chorismate binding enzyme dqs_RS17070 PF04715 Anthranilate synthase component I, N terminal region dqs_RS17075 PF13419 Haloacid dehalogenase-like hydrolase dqs_RS17080 PF00834 Ribulose-phosphate 3 epimerase family dqs_RS17085 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain dqs_RS17085 PF00437 Type II/IV secretion system protein dqs_RS17090 PF12706 Beta-lactamase superfamily domain dqs_RS17105 PF00549 CoA-ligase dqs_RS17105 PF02629 CoA binding domain dqs_RS17110 PF08442 ATP-grasp domain dqs_RS17110 PF00549 CoA-ligase dqs_RS17125 PF01784 NIF3 (NGG1p interacting factor 3) dqs_RS17130 PF17820 PDZ domain dqs_RS17130 PF13180 PDZ domain dqs_RS17135 PF00902 Sec-independent protein translocase protein (TatC) dqs_RS17140 PF02416 mttA/Hcf106 family dqs_RS17145 PF02416 mttA/Hcf106 family dqs_RS17150 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase dqs_RS17155 PF01502 Phosphoribosyl-AMP cyclohydrolase dqs_RS17160 PF00977 Histidine biosynthesis protein dqs_RS17165 PF00977 Histidine biosynthesis protein dqs_RS17170 PF00117 Glutamine amidotransferase class-I dqs_RS17175 PF00475 Imidazoleglycerol-phosphate dehydratase dqs_RS17180 PF00155 Aminotransferase class I and II dqs_RS17185 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain dqs_RS17185 PF01464 Transglycosylase SLT domain dqs_RS17190 PF01510 N-acetylmuramoyl-L-alanine amidase dqs_RS17195 PF00884 Sulfatase dqs_RS17195 PF16347 Domain of unknown function (DUF4976) dqs_RS17205 PF00005 ABC transporter dqs_RS17220 PF07963 Prokaryotic N-terminal methylation motif dqs_RS17220 PF00114 Pilin (bacterial filament) dqs_RS17225 PF00072 Response regulator receiver domain dqs_RS17225 PF00158 Sigma-54 interaction domain dqs_RS17225 PF02954 Bacterial regulatory protein, Fis family dqs_RS17230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS17230 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS17240 PF00155 Aminotransferase class I and II dqs_RS17245 PF01008 Initiation factor 2 subunit family dqs_RS17260 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase dqs_RS17260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase dqs_RS17265 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase dqs_RS17265 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase dqs_RS17270 PF02885 Glycosyl transferase family, helical bundle domain dqs_RS17275 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain dqs_RS17275 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain dqs_RS17295 PF02678 Pirin dqs_RS17295 PF05726 Pirin C-terminal cupin domain dqs_RS17300 PF02525 Flavodoxin-like fold dqs_RS17305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS17305 PF03466 LysR substrate binding domain dqs_RS17310 PF02600 Disulfide bond formation protein DsbB dqs_RS17325 PF00873 AcrB/AcrD/AcrF family dqs_RS17340 PF00899 ThiF family dqs_RS17350 PF00155 Aminotransferase class I and II dqs_RS17355 PF03707 Bacterial signalling protein N terminal repeat dqs_RS17355 PF00563 EAL domain dqs_RS17355 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS17360 PF00072 Response regulator receiver domain dqs_RS17365 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS17365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS17365 PF01590 GAF domain dqs_RS17365 PF08446 PAS fold dqs_RS17365 PF00360 Phytochrome region dqs_RS17375 PF00436 Single-strand binding protein family dqs_RS17380 PF07690 Major Facilitator Superfamily dqs_RS17385 PF17755 UvrA DNA-binding domain dqs_RS17385 PF17760 UvrA interaction domain dqs_RS17395 PF16363 GDP-mannose 4,6 dehydratase dqs_RS17400 PF01196 Ribosomal protein L17 dqs_RS17405 PF01000 RNA polymerase Rpb3/RpoA insert domain dqs_RS17405 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain dqs_RS17405 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain dqs_RS17410 PF01479 S4 domain dqs_RS17410 PF00163 Ribosomal protein S4/S9 N-terminal domain dqs_RS17415 PF00411 Ribosomal protein S11 dqs_RS17420 PF00416 Ribosomal protein S13/S18 dqs_RS17425 PF01176 Translation initiation factor 1A / IF-1 dqs_RS17430 PF00344 SecY translocase dqs_RS17435 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A dqs_RS17440 PF00327 Ribosomal protein L30p/L7e dqs_RS17445 PF03719 Ribosomal protein S5, C-terminal domain dqs_RS17445 PF00333 Ribosomal protein S5, N-terminal domain dqs_RS17450 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast dqs_RS17455 PF00347 Ribosomal protein L6 dqs_RS17460 PF00410 Ribosomal protein S8 dqs_RS17465 PF00253 Ribosomal protein S14p/S29e dqs_RS17470 PF00673 ribosomal L5P family C-terminus dqs_RS17470 PF00281 Ribosomal protein L5 dqs_RS17475 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 dqs_RS17480 PF00238 Ribosomal protein L14p/L23e dqs_RS17485 PF00366 Ribosomal protein S17 dqs_RS17490 PF00831 Ribosomal L29 protein dqs_RS17495 PF00252 Ribosomal protein L16p/L10e dqs_RS17500 PF07650 KH domain dqs_RS17500 PF00189 Ribosomal protein S3, C-terminal domain dqs_RS17505 PF00237 Ribosomal protein L22p/L17e dqs_RS17510 PF00203 Ribosomal protein S19 dqs_RS17515 PF00181 Ribosomal Proteins L2, RNA binding domain dqs_RS17515 PF03947 Ribosomal Proteins L2, C-terminal domain dqs_RS17520 PF00276 Ribosomal protein L23 dqs_RS17525 PF00573 Ribosomal protein L4/L1 family dqs_RS17530 PF00297 Ribosomal protein L3 dqs_RS17535 PF00338 Ribosomal protein S10p/S20e dqs_RS17540 PF03143 Elongation factor Tu C-terminal domain dqs_RS17540 PF03144 Elongation factor Tu domain 2 dqs_RS17540 PF00009 Elongation factor Tu GTP binding domain dqs_RS17545 PF00679 Elongation factor G C-terminus dqs_RS17545 PF00009 Elongation factor Tu GTP binding domain dqs_RS17545 PF03764 Elongation factor G, domain IV dqs_RS17545 PF14492 Elongation Factor G, domain II dqs_RS17545 PF03144 Elongation factor Tu domain 2 dqs_RS17550 PF00177 Ribosomal protein S7p/S5e dqs_RS17555 PF00164 Ribosomal protein S12/S23 dqs_RS17560 PF00623 RNA polymerase Rpb1, domain 2 dqs_RS17560 PF04983 RNA polymerase Rpb1, domain 3 dqs_RS17560 PF04997 RNA polymerase Rpb1, domain 1 dqs_RS17560 PF04998 RNA polymerase Rpb1, domain 5 dqs_RS17560 PF05000 RNA polymerase Rpb1, domain 4 dqs_RS17565 PF04565 RNA polymerase Rpb2, domain 3 dqs_RS17565 PF04563 RNA polymerase beta subunit dqs_RS17565 PF04561 RNA polymerase Rpb2, domain 2 dqs_RS17565 PF04560 RNA polymerase Rpb2, domain 7 dqs_RS17565 PF10385 RNA polymerase beta subunit external 1 domain dqs_RS17565 PF00562 RNA polymerase Rpb2, domain 6 dqs_RS17570 PF16320 Ribosomal protein L7/L12 dimerisation domain dqs_RS17570 PF00542 Ribosomal protein L7/L12 C-terminal domain dqs_RS17575 PF00466 Ribosomal protein L10 dqs_RS17580 PF00687 Ribosomal protein L1p/L10e family dqs_RS17585 PF00298 Ribosomal protein L11, RNA binding domain dqs_RS17585 PF03946 Ribosomal protein L11, N-terminal domain dqs_RS17590 PF02357 Transcription termination factor nusG dqs_RS17590 PF00467 KOW motif dqs_RS17595 PF00584 SecE/Sec61-gamma subunits of protein translocation complex dqs_RS17605 PF03144 Elongation factor Tu domain 2 dqs_RS17605 PF00009 Elongation factor Tu GTP binding domain dqs_RS17605 PF03143 Elongation factor Tu C-terminal domain dqs_RS17625 PF02913 FAD linked oxidases, C-terminal domain dqs_RS17625 PF01565 FAD binding domain dqs_RS17645 PF00196 Bacterial regulatory proteins, luxR family dqs_RS17645 PF00072 Response regulator receiver domain dqs_RS17655 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS17655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS17655 PF01627 Hpt domain dqs_RS17655 PF00672 HAMP domain dqs_RS17655 PF00072 Response regulator receiver domain dqs_RS17665 PF02515 CoA-transferase family III dqs_RS17675 PF00005 ABC transporter dqs_RS17690 PF02653 Branched-chain amino acid transport system / permease component dqs_RS17695 PF00005 ABC transporter dqs_RS17695 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_RS17700 PF00501 AMP-binding enzyme dqs_RS17710 PF00202 Aminotransferase class-III dqs_RS17715 PF02581 Thiamine monophosphate synthase dqs_RS17725 PF00301 Rubredoxin dqs_RS17730 PF00072 Response regulator receiver domain dqs_RS17735 PF00072 Response regulator receiver domain dqs_RS17745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS17745 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term dqs_RS17750 PF01584 CheW-like domain dqs_RS17750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS17750 PF01627 Hpt domain dqs_RS17750 PF00072 Response regulator receiver domain dqs_RS17750 PF00072 Response regulator receiver domain dqs_RS17750 PF01584 CheW-like domain dqs_RS17750 PF01627 Hpt domain dqs_RS17750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS17755 PF00875 DNA photolyase dqs_RS17755 PF03441 FAD binding domain of DNA photolyase dqs_RS17760 PF02622 Uncharacterized ACR, COG1678 dqs_RS17765 PF03652 Holliday junction resolvase dqs_RS17770 PF00156 Phosphoribosyl transferase domain dqs_RS17775 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain dqs_RS17775 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain dqs_RS17780 PF01979 Amidohydrolase family dqs_RS17785 PF02594 Uncharacterised ACR, YggU family COG1872 dqs_RS17790 PF02325 YGGT family dqs_RS17795 PF03807 NADP oxidoreductase coenzyme F420-dependent dqs_RS17795 PF14748 Pyrroline-5-carboxylate reductase dimerisation dqs_RS17800 PF01168 Alanine racemase, N-terminal domain dqs_RS17805 PF00437 Type II/IV secretion system protein dqs_RS17810 PF00437 Type II/IV secretion system protein dqs_RS17815 PF13296 Putative type VI secretion system Rhs element Vgr dqs_RS17815 PF04717 Type VI secretion system, phage-baseplate injector dqs_RS17815 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) dqs_RS17840 PF17202 Single cache domain 3 dqs_RS17840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS17840 PF00672 HAMP domain dqs_RS17845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS17845 PF08447 PAS fold dqs_RS17850 PF02926 THUMP domain dqs_RS17850 PF01170 Putative RNA methylase family UPF0020 dqs_RS17870 PF13247 4Fe-4S dicluster domain dqs_RS17875 PF00384 Molybdopterin oxidoreductase dqs_RS17875 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_RS17875 PF01568 Molydopterin dinucleotide binding domain dqs_RS17905 PF02634 FdhD/NarQ family dqs_RS17910 PF12804 MobA-like NTP transferase domain dqs_RS17920 PF03205 Molybdopterin guanine dinucleotide synthesis protein B dqs_RS17925 PF00989 PAS fold dqs_RS17925 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS17925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS17930 PF00158 Sigma-54 interaction domain dqs_RS17930 PF02954 Bacterial regulatory protein, Fis family dqs_RS17930 PF00072 Response regulator receiver domain dqs_RS17935 PF03653 Uncharacterised protein family (UPF0093) dqs_RS17945 PF00970 Oxidoreductase FAD-binding domain dqs_RS17945 PF00175 Oxidoreductase NAD-binding domain dqs_RS17945 PF00111 2Fe-2S iron-sulfur cluster binding domain dqs_RS17950 PF00563 EAL domain dqs_RS17950 PF08668 HDOD domain dqs_RS17955 PF13426 PAS domain dqs_RS17955 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS17955 PF13188 PAS domain dqs_RS17955 PF00989 PAS fold dqs_RS17955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS17960 PF00563 EAL domain dqs_RS17960 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS17960 PF03707 Bacterial signalling protein N terminal repeat dqs_RS17965 PF00034 Cytochrome c dqs_RS17970 PF02492 CobW/HypB/UreG, nucleotide-binding domain dqs_RS17975 PF01730 UreF dqs_RS17980 PF02814 UreE urease accessory protein, N-terminal domain dqs_RS17980 PF05194 UreE urease accessory protein, C-terminal domain dqs_RS17985 PF01979 Amidohydrolase family dqs_RS17985 PF00449 Urease alpha-subunit, N-terminal domain dqs_RS17990 PF00699 Urease beta subunit dqs_RS18000 PF00547 Urease, gamma subunit dqs_RS18005 PF01774 UreD urease accessory protein dqs_RS18010 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term dqs_RS18010 PF14489 QueF-like protein dqs_RS18015 PF00884 Sulfatase dqs_RS18025 PF09084 NMT1/THI5 like dqs_RS18030 PF00005 ABC transporter dqs_RS18035 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS18040 PF01638 HxlR-like helix-turn-helix dqs_RS18045 PF03358 NADPH-dependent FMN reductase dqs_RS18050 PF07685 CobB/CobQ-like glutamine amidotransferase domain dqs_RS18050 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain dqs_RS18055 PF17113 Regulatory signalling modulator protein AmpE dqs_RS18055 PF03186 CobD/Cbib protein dqs_RS18060 PF00155 Aminotransferase class I and II dqs_RS18065 PF01497 Periplasmic binding protein dqs_RS18075 PF00270 DEAD/DEAH box helicase dqs_RS18075 PF00271 Helicase conserved C-terminal domain dqs_RS18080 PF00682 HMGL-like dqs_RS18080 PF08502 LeuA allosteric (dimerisation) domain dqs_RS18085 PF00881 Nitroreductase family dqs_RS18100 PF08448 PAS fold dqs_RS18100 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS18100 PF00563 EAL domain dqs_RS18110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_RS18115 PF01903 CbiX dqs_RS18120 PF02570 Precorrin-8X methylmutase dqs_RS18125 PF01888 CbiD dqs_RS18130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_RS18135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_RS18140 PF11761 Cobalamin biosynthesis central region dqs_RS18140 PF11760 Cobalamin synthesis G N-terminal dqs_RS18140 PF01890 Cobalamin synthesis G C-terminus dqs_RS18150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_RS18150 PF01077 Nitrite and sulphite reductase 4Fe-4S domain dqs_RS18165 PF00155 Aminotransferase class I and II dqs_RS18165 PF00392 Bacterial regulatory proteins, gntR family dqs_RS18170 PF01938 TRAM domain dqs_RS18170 PF05958 tRNA (Uracil-5-)-methyltransferase dqs_RS18175 PF02798 Glutathione S-transferase, N-terminal domain dqs_RS18185 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain dqs_RS18185 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain dqs_RS18190 PF01810 LysE type translocator dqs_RS18195 PF02074 Carboxypeptidase Taq (M32) metallopeptidase dqs_RS18210 PF02666 Phosphatidylserine decarboxylase dqs_RS18215 PF07685 CobB/CobQ-like glutamine amidotransferase domain dqs_RS18215 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain dqs_RS18220 PF10414 Sirohaem synthase dimerisation region dqs_RS18220 PF14824 Sirohaem biosynthesis protein central dqs_RS18220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases dqs_RS18225 PF12557 Cob(I)alamin adenosyltransferase N terminal dqs_RS18225 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP dqs_RS18230 PF00005 ABC transporter dqs_RS18235 PF01032 FecCD transport family dqs_RS18240 PF00593 TonB dependent receptor dqs_RS18240 PF07715 TonB-dependent Receptor Plug Domain dqs_RS18250 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase dqs_RS18255 PF01435 Peptidase family M48 dqs_RS18260 PF05987 Bacterial protein of unknown function (DUF898) dqs_RS18265 PF02277 Phosphoribosyltransferase dqs_RS18270 PF02654 Cobalamin-5-phosphate synthase dqs_RS18280 PF00294 pfkB family carbohydrate kinase dqs_RS18280 PF01467 Cytidylyltransferase-like dqs_RS18285 PF01370 NAD dependent epimerase/dehydratase family dqs_RS18290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) dqs_RS18295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) dqs_RS18300 PF13439 Glycosyltransferase Family 4 dqs_RS18300 PF00534 Glycosyl transferases group 1 dqs_RS18325 PF00005 ABC transporter dqs_RS18325 PF00664 ABC transporter transmembrane region dqs_RS18335 PF04932 O-Antigen ligase dqs_RS18355 PF00534 Glycosyl transferases group 1 dqs_RS18355 PF13439 Glycosyltransferase Family 4 dqs_RS18360 PF16861 Carbamoyltransferase C-terminus dqs_RS18360 PF02543 Carbamoyltransferase N-terminus dqs_RS18365 PF01757 Acyltransferase family dqs_RS18370 PF02719 Polysaccharide biosynthesis protein dqs_RS18375 PF00953 Glycosyl transferase family 4 dqs_RS18380 PF01370 NAD dependent epimerase/dehydratase family dqs_RS18385 PF00534 Glycosyl transferases group 1 dqs_RS18385 PF13439 Glycosyltransferase Family 4 dqs_RS18390 PF00535 Glycosyl transferase family 2 dqs_RS18395 PF01370 NAD dependent epimerase/dehydratase family dqs_RS18400 PF16363 GDP-mannose 4,6 dehydratase dqs_RS18435 PF00535 Glycosyl transferase family 2 dqs_RS18445 PF00005 ABC transporter dqs_RS18450 PF01061 ABC-2 type transporter dqs_RS18460 PF01370 NAD dependent epimerase/dehydratase family dqs_RS18465 PF01367 5'-3' exonuclease, C-terminal SAM fold dqs_RS18465 PF00476 DNA polymerase family A dqs_RS18465 PF01612 3'-5' exonuclease dqs_RS18465 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain dqs_RS18470 PF03641 Possible lysine decarboxylase dqs_RS18485 PF01636 Phosphotransferase enzyme family dqs_RS18500 PF01467 Cytidylyltransferase-like dqs_RS18510 PF02590 Predicted SPOUT methyltransferase dqs_RS18515 PF01327 Polypeptide deformylase dqs_RS18520 PF02545 Maf-like protein dqs_RS18525 PF10150 Ribonuclease E/G family dqs_RS18525 PF00575 S1 RNA binding domain dqs_RS18540 PF00072 Response regulator receiver domain dqs_RS18540 PF00486 Transcriptional regulatory protein, C terminal dqs_RS18545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS18545 PF00672 HAMP domain dqs_RS18545 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS18555 PF03466 LysR substrate binding domain dqs_RS18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS18560 PF00672 HAMP domain dqs_RS18560 PF00211 Adenylate and Guanylate cyclase catalytic domain dqs_RS18565 PF03352 Methyladenine glycosylase dqs_RS18570 PF03466 LysR substrate binding domain dqs_RS18570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS18575 PF00107 Zinc-binding dehydrogenase dqs_RS18575 PF08240 Alcohol dehydrogenase GroES-like domain dqs_RS18580 PF00756 Putative esterase dqs_RS18590 PF00012 Hsp70 protein dqs_RS18595 PF01464 Transglycosylase SLT domain dqs_RS18615 PF03466 LysR substrate binding domain dqs_RS18615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS18620 PF07690 Major Facilitator Superfamily dqs_RS18625 PF00248 Aldo/keto reductase family dqs_RS18630 PF00664 ABC transporter transmembrane region dqs_RS18630 PF00005 ABC transporter dqs_RS18640 PF10605 3HB-oligomer hydrolase (3HBOH) dqs_RS18650 PF01380 SIS domain dqs_RS18655 PF00132 Bacterial transferase hexapeptide (six repeats) dqs_RS18655 PF12804 MobA-like NTP transferase domain dqs_RS18660 PF01515 Phosphate acetyl/butaryl transferase dqs_RS18665 PF00871 Acetokinase family dqs_RS18675 PF07992 Pyridine nucleotide-disulphide oxidoreductase dqs_RS18675 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster dqs_RS18680 PF04898 Glutamate synthase central domain dqs_RS18680 PF01645 Conserved region in glutamate synthase dqs_RS18680 PF00310 Glutamine amidotransferases class-II dqs_RS18680 PF01493 GXGXG motif dqs_RS18685 PF13286 Phosphohydrolase-associated domain dqs_RS18685 PF01966 HD domain dqs_RS18690 PF01761 3-dehydroquinate synthase dqs_RS18695 PF01202 Shikimate kinase dqs_RS18700 PF11741 AMIN domain dqs_RS18700 PF00263 Bacterial type II and III secretion system protein dqs_RS18700 PF03958 Bacterial type II/III secretion system short domain dqs_RS18700 PF07660 Secretin and TonB N terminus short domain dqs_RS18710 PF04350 Pilus assembly protein, PilO dqs_RS18715 PF05137 Fimbrial assembly protein (PilN) dqs_RS18720 PF11104 Type IV pilus assembly protein PilM; dqs_RS18725 PF17092 Penicillin-binding protein OB-like domain dqs_RS18725 PF00912 Transglycosylase dqs_RS18725 PF00905 Penicillin binding protein transpeptidase domain dqs_RS18730 PF01491 Frataxin-like domain dqs_RS18735 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain dqs_RS18735 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain dqs_RS18745 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family dqs_RS18755 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase dqs_RS18760 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family dqs_RS18765 PF02146 Sir2 family dqs_RS18770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_RS18770 PF00384 Molybdopterin oxidoreductase dqs_RS18770 PF01568 Molydopterin dinucleotide binding domain dqs_RS18780 PF00156 Phosphoribosyl transferase domain dqs_RS18785 PF03372 Endonuclease/Exonuclease/phosphatase family dqs_RS18790 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS18790 PF00563 EAL domain dqs_RS18790 PF03707 Bacterial signalling protein N terminal repeat dqs_RS18795 PF13188 PAS domain dqs_RS18795 PF00072 Response regulator receiver domain dqs_RS18795 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS18795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS18795 PF08448 PAS fold dqs_RS18800 PF05957 Bacterial protein of unknown function (DUF883) dqs_RS18815 PF00156 Phosphoribosyl transferase domain dqs_RS18825 PF00072 Response regulator receiver domain dqs_RS18825 PF00486 Transcriptional regulatory protein, C terminal dqs_RS18830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS18830 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS18835 PF17820 PDZ domain dqs_RS18835 PF13180 PDZ domain dqs_RS18845 PF14497 Glutathione S-transferase, C-terminal domain dqs_RS18845 PF02798 Glutathione S-transferase, N-terminal domain dqs_RS18850 PF03480 Bacterial extracellular solute-binding protein, family 7 dqs_RS18870 PF01494 FAD binding domain dqs_RS18890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS18890 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS18890 PF00672 HAMP domain dqs_RS18890 PF01627 Hpt domain dqs_RS18890 PF00072 Response regulator receiver domain dqs_RS18890 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_RS18895 PF00072 Response regulator receiver domain dqs_RS18910 PF01565 FAD binding domain dqs_RS18910 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain dqs_RS18920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS18920 PF12729 Four helix bundle sensory module for signal transduction dqs_RS18920 PF00672 HAMP domain dqs_RS18940 PF00579 tRNA synthetases class I (W and Y) dqs_RS18960 PF07075 Protein of unknown function (DUF1343) dqs_RS18965 PF00085 Thioredoxin dqs_RS18975 PF08241 Methyltransferase domain dqs_RS18990 PF02311 AraC-like ligand binding domain dqs_RS18990 PF12833 Helix-turn-helix domain dqs_RS19010 PF00583 Acetyltransferase (GNAT) family dqs_RS19025 PF13847 Methyltransferase domain dqs_RS19030 PF09297 NADH pyrophosphatase zinc ribbon domain dqs_RS19030 PF00293 NUDIX domain dqs_RS19075 PF00809 Pterin binding enzyme dqs_RS19075 PF02965 Vitamin B12 dependent methionine synthase, activation domain dqs_RS19075 PF02574 Homocysteine S-methyltransferase dqs_RS19075 PF02310 B12 binding domain dqs_RS19075 PF02607 B12 binding domain dqs_RS19090 PF13458 Periplasmic binding protein dqs_RS19095 PF13458 Periplasmic binding protein dqs_RS19100 PF02653 Branched-chain amino acid transport system / permease component dqs_RS19105 PF11862 Domain of unknown function (DUF3382) dqs_RS19105 PF02653 Branched-chain amino acid transport system / permease component dqs_RS19110 PF12399 Branched-chain amino acid ATP-binding cassette transporter dqs_RS19110 PF00005 ABC transporter dqs_RS19115 PF00005 ABC transporter dqs_RS19120 PF07690 Major Facilitator Superfamily dqs_RS19125 PF01078 Magnesium chelatase, subunit ChlI dqs_RS19125 PF13335 Magnesium chelatase, subunit ChlI C-terminal dqs_RS19130 PF04380 Membrane fusogenic activity dqs_RS19140 PF00543 Nitrogen regulatory protein P-II dqs_RS19145 PF00909 Ammonium Transporter Family dqs_RS19150 PF03922 OmpW family dqs_RS19155 PF01842 ACT domain dqs_RS19155 PF00551 Formyl transferase dqs_RS19165 PF01966 HD domain dqs_RS19165 PF11871 Domain of unknown function (DUF3391) dqs_RS19170 PF00005 ABC transporter dqs_RS19170 PF12848 ABC transporter dqs_RS19180 PF01323 DSBA-like thioredoxin domain dqs_RS19190 PF03466 LysR substrate binding domain dqs_RS19190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS19195 PF00857 Isochorismatase family dqs_RS19200 PF12833 Helix-turn-helix domain dqs_RS19200 PF01965 DJ-1/PfpI family dqs_RS19210 PF14850 DNA-binding domain of Proline dehydrogenase dqs_RS19210 PF18327 Proline utilization A proline dehydrogenase N-terminal domain dqs_RS19210 PF01619 Proline dehydrogenase dqs_RS19210 PF00171 Aldehyde dehydrogenase family dqs_RS19215 PF02424 ApbE family dqs_RS19220 PF02951 Prokaryotic glutathione synthetase, N-terminal domain dqs_RS19220 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain dqs_RS19230 PF07669 Eco57I restriction-modification methylase dqs_RS19230 PF12950 TaqI-like C-terminal specificity domain dqs_RS19235 PF01814 Hemerythrin HHE cation binding domain dqs_RS19240 PF01814 Hemerythrin HHE cation binding domain dqs_RS19285 PF06628 Catalase-related immune-responsive dqs_RS19285 PF00199 Catalase dqs_RS19285 PF18011 C-terminal domain found in long catalases dqs_RS19290 PF07969 Amidohydrolase family dqs_RS19295 PF01476 LysM domain dqs_RS19295 PF04972 BON domain dqs_RS19315 PF03793 PASTA domain dqs_RS19315 PF00069 Protein kinase domain dqs_RS19320 PF16325 Peptidase family U32 C-terminal domain dqs_RS19320 PF01136 Peptidase family U32 dqs_RS19330 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS19340 PF12848 ABC transporter dqs_RS19340 PF00005 ABC transporter dqs_RS19345 PF03830 PTS system sorbose subfamily IIB component dqs_RS19345 PF03610 PTS system fructose IIA component dqs_RS19350 PF00381 PTS HPr component phosphorylation site dqs_RS19355 PF05524 PEP-utilising enzyme, N-terminal dqs_RS19355 PF00391 PEP-utilising enzyme, mobile domain dqs_RS19355 PF02896 PEP-utilising enzyme, TIM barrel domain dqs_RS19375 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal dqs_RS19375 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit dqs_RS19380 PF00374 Nickel-dependent hydrogenase dqs_RS19385 PF01292 Prokaryotic cytochrome b561 dqs_RS19395 PF00255 Glutathione peroxidase dqs_RS19405 PF01750 Hydrogenase maturation protease dqs_RS19410 PF01455 HupF/HypC family dqs_RS19420 PF04809 HupH hydrogenase expression protein, C-terminal conserved region dqs_RS19425 PF00301 Rubredoxin dqs_RS19430 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE dqs_RS19435 PF00374 Nickel-dependent hydrogenase dqs_RS19440 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA dqs_RS19445 PF02492 CobW/HypB/UreG, nucleotide-binding domain dqs_RS19450 PF00708 Acylphosphatase dqs_RS19450 PF07503 HypF finger dqs_RS19450 PF01300 Telomere recombination dqs_RS19450 PF17788 HypF Kae1-like domain dqs_RS19455 PF01455 HupF/HypC family dqs_RS19460 PF01924 Hydrogenase formation hypA family dqs_RS19465 PF00586 AIR synthase related protein, N-terminal domain dqs_RS19465 PF02769 AIR synthase related protein, C-terminal domain dqs_RS19470 PF02954 Bacterial regulatory protein, Fis family dqs_RS19470 PF00072 Response regulator receiver domain dqs_RS19470 PF00158 Sigma-54 interaction domain dqs_RS19485 PF00374 Nickel-dependent hydrogenase dqs_RS19490 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS19495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS19495 PF08447 PAS fold dqs_RS19495 PF08448 PAS fold dqs_RS19500 PF01613 Flavin reductase like domain dqs_RS19505 PF00730 HhH-GPD superfamily base excision DNA repair protein dqs_RS19505 PF14815 NUDIX domain dqs_RS19505 PF10576 Iron-sulfur binding domain of endonuclease III dqs_RS19505 PF00633 Helix-hairpin-helix motif dqs_RS19515 PF02441 Flavoprotein dqs_RS19540 PF02653 Branched-chain amino acid transport system / permease component dqs_RS19540 PF11862 Domain of unknown function (DUF3382) dqs_RS19545 PF02653 Branched-chain amino acid transport system / permease component dqs_RS19555 PF01741 Large-conductance mechanosensitive channel, MscL dqs_RS19560 PF00753 Metallo-beta-lactamase superfamily dqs_RS19565 PF00459 Inositol monophosphatase family dqs_RS19575 PF00005 ABC transporter dqs_RS19580 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS19585 PF00455 DeoR C terminal sensor domain dqs_RS19585 PF08220 DeoR-like helix-turn-helix domain dqs_RS19590 PF06751 Ethanolamine ammonia lyase large subunit (EutB) dqs_RS19595 PF05985 Ethanolamine ammonia-lyase light chain (EutC) dqs_RS19605 PF12849 PBP superfamily domain dqs_RS19610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS19610 PF03459 TOBE domain dqs_RS19615 PF00005 ABC transporter dqs_RS19615 PF03459 TOBE domain dqs_RS19620 PF00528 Binding-protein-dependent transport system inner membrane component dqs_RS19630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS19630 PF03459 TOBE domain dqs_RS19635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS19635 PF03459 TOBE domain dqs_RS19645 PF05170 AsmA family dqs_RS19650 PF03707 Bacterial signalling protein N terminal repeat dqs_RS19650 PF00990 Diguanylate cyclase, GGDEF domain dqs_RS19650 PF00563 EAL domain dqs_RS19655 PF13538 UvrD-like helicase C-terminal domain dqs_RS19660 PF13361 UvrD-like helicase C-terminal domain dqs_RS19660 PF00580 UvrD/REP helicase N-terminal domain dqs_RS19660 PF12705 PD-(D/E)XK nuclease superfamily dqs_RS19665 PF00593 TonB dependent receptor dqs_RS19665 PF07715 TonB-dependent Receptor Plug Domain dqs_RS19670 PF05175 Methyltransferase small domain dqs_RS19675 PF02834 LigT like Phosphoesterase dqs_RS19680 PF00245 Alkaline phosphatase dqs_RS19690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain dqs_RS19690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain dqs_RS19690 PF00378 Enoyl-CoA hydratase/isomerase dqs_RS19695 PF17946 RecC C-terminal domain dqs_RS19700 PF03466 LysR substrate binding domain dqs_RS19700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family dqs_RS19705 PF00180 Isocitrate/isopropylmalate dehydrogenase dqs_RS19710 PF12843 Putative quorum-sensing-regulated virulence factor dqs_RS19715 PF01914 MarC family integral membrane protein dqs_RS19730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III dqs_RS19730 PF13360 PQQ-like domain dqs_RS19740 PF00676 Dehydrogenase E1 component dqs_RS19745 PF02779 Transketolase, pyrimidine binding domain dqs_RS19745 PF02780 Transketolase, C-terminal domain dqs_RS19755 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) dqs_RS19755 PF00364 Biotin-requiring enzyme dqs_RS19755 PF02817 e3 binding domain dqs_RS19760 PF03099 Biotin/lipoate A/B protein ligase family dqs_RS19770 PF00732 GMC oxidoreductase dqs_RS19770 PF05199 GMC oxidoreductase dqs_RS19780 PF01590 GAF domain dqs_RS19780 PF00158 Sigma-54 interaction domain dqs_RS19780 PF02954 Bacterial regulatory protein, Fis family dqs_RS19785 PF06715 Gp5 C-terminal repeat (3 copies) dqs_RS19785 PF04717 Type VI secretion system, phage-baseplate injector dqs_RS19845 PF00211 Adenylate and Guanylate cyclase catalytic domain dqs_RS19845 PF00069 Protein kinase domain dqs_RS19855 PF14331 ImcF-related N-terminal domain dqs_RS19855 PF06744 Type VI secretion protein IcmF C-terminal dqs_RS19855 PF06761 Intracellular multiplication and human macrophage-killing dqs_RS19860 PF13677 Membrane MotB of proton-channel complex MotA/MotB dqs_RS19860 PF00691 OmpA family dqs_RS19865 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE dqs_RS19875 PF06812 ImpA, N-terminal, type VI secretion system dqs_RS19880 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 dqs_RS19885 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath dqs_RS19890 PF05638 Type VI secretion system effector, Hcp dqs_RS19900 PF07024 ImpE protein dqs_RS19910 PF05947 Type VI secretion system, TssF dqs_RS19920 PF07724 AAA domain (Cdc48 subfamily) dqs_RS19920 PF17871 AAA lid domain dqs_RS19920 PF00004 ATPase family associated with various cellular activities (AAA) dqs_RS19920 PF10431 C-terminal, D2-small domain, of ClpB protein dqs_RS19945 PF00069 Protein kinase domain dqs_RS19945 PF03793 PASTA domain dqs_RS19950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS19950 PF00672 HAMP domain dqs_RS19950 PF12729 Four helix bundle sensory module for signal transduction dqs_RS19960 PF02801 Beta-ketoacyl synthase, C-terminal domain dqs_RS19960 PF00109 Beta-ketoacyl synthase, N-terminal domain dqs_RS19980 PF00999 Sodium/hydrogen exchanger family dqs_RS19985 PF01118 Semialdehyde dehydrogenase, NAD binding domain dqs_RS20010 PF04820 Tryptophan halogenase dqs_RS20020 PF01037 Lrp/AsnC ligand binding domain dqs_RS20025 PF01266 FAD dependent oxidoreductase dqs_RS20030 PF00842 Alanine racemase, C-terminal domain dqs_RS20030 PF01168 Alanine racemase, N-terminal domain dqs_RS20045 PF03918 Cytochrome C biogenesis protein dqs_RS20050 PF08534 Redoxin dqs_RS20055 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal dqs_RS20055 PF01578 Cytochrome C assembly protein dqs_RS20060 PF03100 CcmE dqs_RS20070 PF01578 Cytochrome C assembly protein dqs_RS20075 PF03379 CcmB protein dqs_RS20080 PF00005 ABC transporter dqs_RS20085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain dqs_RS20085 PF00672 HAMP domain dqs_RS20085 PF02743 Cache domain dqs_RS20090 PF03264 NapC/NirT cytochrome c family, N-terminal region dqs_RS20095 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) dqs_RS20100 PF13237 4Fe-4S dicluster domain dqs_RS20100 PF12801 4Fe-4S binding domain dqs_RS20105 PF12800 4Fe-4S binding domain dqs_RS20105 PF12838 4Fe-4S dicluster domain dqs_RS20110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain dqs_RS20110 PF00384 Molybdopterin oxidoreductase dqs_RS20110 PF01568 Molydopterin dinucleotide binding domain dqs_RS20120 PF00037 4Fe-4S binding domain dqs_RS20120 PF13187 4Fe-4S dicluster domain dqs_RS20120 PF12800 4Fe-4S binding domain dqs_RS20125 PF00072 Response regulator receiver domain dqs_RS20125 PF00672 HAMP domain dqs_RS20125 PF01627 Hpt domain dqs_RS20125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS20125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_RS20125 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS20130 PF01627 Hpt domain dqs_RS20130 PF00072 Response regulator receiver domain dqs_RS20130 PF00497 Bacterial extracellular solute-binding proteins, family 3 dqs_RS20130 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS20130 PF00989 PAS fold dqs_RS20130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS20135 PF00072 Response regulator receiver domain dqs_RS20135 PF00672 HAMP domain dqs_RS20135 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS20135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) dqs_RS20135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS20135 PF01627 Hpt domain dqs_RS20140 PF00929 Exonuclease dqs_RS20145 PF01209 ubiE/COQ5 methyltransferase family dqs_RS20155 PF04607 Region found in RelA / SpoT proteins dqs_RS20155 PF02824 TGS domain dqs_RS20155 PF13291 ACT domain dqs_RS20160 PF01192 RNA polymerase Rpb6 dqs_RS20165 PF00625 Guanylate kinase dqs_RS20185 PF14579 Helix-hairpin-helix motif dqs_RS20185 PF02811 PHP domain dqs_RS20185 PF01336 OB-fold nucleic acid binding domain dqs_RS20185 PF07733 Bacterial DNA polymerase III alpha NTPase domain dqs_RS20185 PF17657 Bacterial DNA polymerase III alpha subunit finger domain dqs_RS20195 PF13411 MerR HTH family regulatory protein dqs_RS20200 PF03755 YicC-like family, N-terminal region dqs_RS20200 PF08340 Domain of unknown function (DUF1732) dqs_RS20205 PF00069 Protein kinase domain dqs_RS20215 PF03725 3' exoribonuclease family, domain 2 dqs_RS20215 PF01138 3' exoribonuclease family, domain 1 dqs_RS20220 PF01725 Ham1 family dqs_RS20225 PF04055 Radical SAM superfamily dqs_RS20225 PF06969 HemN C-terminal domain dqs_RS20235 PF01343 Peptidase family S49 dqs_RS20240 PF02390 Putative methyltransferase dqs_RS20245 PF05690 Thiazole biosynthesis protein ThiG dqs_RS20250 PF02597 ThiS family dqs_RS20250 PF05690 Thiazole biosynthesis protein ThiG dqs_RS20255 PF00561 alpha/beta hydrolase fold dqs_RS20260 PF07021 Methionine biosynthesis protein MetW dqs_RS20260 PF00561 alpha/beta hydrolase fold dqs_RS20275 PF07690 Major Facilitator Superfamily dqs_RS20285 PF00484 Carbonic anhydrase dqs_RS20290 PF00271 Helicase conserved C-terminal domain dqs_RS20290 PF17764 3′ DNA-binding domain (3′BD) dqs_RS20290 PF18074 Primosomal protein N C-terminal domain dqs_RS20290 PF00270 DEAD/DEAH box helicase dqs_RS20290 PF18319 PriA DNA helicase Cys-rich region (CRR) domain dqs_RS20295 PF01208 Uroporphyrinogen decarboxylase (URO-D) dqs_RS20300 PF02386 Cation transport protein dqs_RS20305 PF02080 TrkA-C domain dqs_RS20305 PF02254 TrkA-N domain dqs_RS20310 PF00072 Response regulator receiver domain dqs_RS20310 PF02954 Bacterial regulatory protein, Fis family dqs_RS20310 PF00158 Sigma-54 interaction domain dqs_RS20315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dqs_RS20315 PF00989 PAS fold dqs_RS20315 PF00512 His Kinase A (phospho-acceptor) domain dqs_RS20315 PF00672 HAMP domain dqs_RS20325 PF01189 16S rRNA methyltransferase RsmB/F dqs_RS20325 PF01029 NusB family dqs_RS20330 PF17284 Spermidine synthase tetramerisation domain dqs_RS20335 PF01925 Sulfite exporter TauE/SafE dqs_RS20340 PF10396 GTP-binding protein TrmE N-terminus dqs_RS20340 PF12631 MnmE helical domain dqs_RS20340 PF01926 50S ribosome-binding GTPase dqs_RS20345 PF14849 YidC periplasmic domain dqs_RS20345 PF02096 60Kd inner membrane protein dqs_RS20350 PF01809 Putative membrane protein insertion efficiency factor dqs_RS20355 PF00825 Ribonuclease P