locus-tag class description CDA09_RS00005 PF00468 Ribosomal protein L34 CDA09_RS00010 PF00308 Bacterial dnaA protein CDA09_RS00010 PF08299 Bacterial dnaA protein helix-turn-helix CDA09_RS00010 PF11638 DnaA N-terminal domain CDA09_RS00015 PF00712 DNA polymerase III beta subunit, N-terminal domain CDA09_RS00015 PF02767 DNA polymerase III beta subunit, central domain CDA09_RS00015 PF02768 DNA polymerase III beta subunit, C-terminal domain CDA09_RS00020 PF00204 DNA gyrase B CDA09_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus CDA09_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS00020 PF01751 Toprim domain CDA09_RS00020 PF18053 DNA gyrase B subunit insert domain CDA09_RS00040 PF01695 IstB-like ATP binding protein CDA09_RS00045 PF00665 Integrase core domain CDA09_RS00085 PF00563 EAL domain CDA09_RS00085 PF01590 GAF domain CDA09_RS00085 PF00360 Phytochrome region CDA09_RS00085 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS00095 PF03358 NADPH-dependent FMN reductase CDA09_RS00105 PF00563 EAL domain CDA09_RS00105 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS00105 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS00120 PF00005 ABC transporter CDA09_RS00125 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDA09_RS00125 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDA09_RS00130 PF01966 HD domain CDA09_RS00130 PF11871 Domain of unknown function (DUF3391) CDA09_RS00140 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS00145 PF03466 LysR substrate binding domain CDA09_RS00150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS00150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS00150 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS00155 PF02515 CoA-transferase family III CDA09_RS00160 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS00160 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS00160 PF00563 EAL domain CDA09_RS00165 PF04381 Putative exonuclease, RdgC CDA09_RS00175 PF01479 S4 domain CDA09_RS00175 PF00849 RNA pseudouridylate synthase CDA09_RS00185 PF09285 Elongation factor P, C-terminal CDA09_RS00185 PF08207 Elongation factor P (EF-P) KOW-like domain CDA09_RS00185 PF01132 Elongation factor P (EF-P) OB domain CDA09_RS00195 PF17760 UvrA interaction domain CDA09_RS00195 PF17755 UvrA DNA-binding domain CDA09_RS00195 PF00005 ABC transporter CDA09_RS00210 PF03466 LysR substrate binding domain CDA09_RS00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS00225 PF13180 PDZ domain CDA09_RS00230 PF07715 TonB-dependent Receptor Plug Domain CDA09_RS00230 PF00593 TonB dependent receptor CDA09_RS00235 PF03466 LysR substrate binding domain CDA09_RS00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS00240 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS00240 PF18113 Rubredoxin binding C-terminal domain CDA09_RS00245 PF01751 Toprim domain CDA09_RS00245 PF01131 DNA topoisomerase CDA09_RS00250 PF04361 Protein of unknown function (DUF494) CDA09_RS00255 PF17782 DprA winged helix domain CDA09_RS00255 PF02481 DNA recombination-mediator protein A CDA09_RS00265 PF01327 Polypeptide deformylase CDA09_RS00270 PF02911 Formyl transferase, C-terminal domain CDA09_RS00270 PF00551 Formyl transferase CDA09_RS00275 PF01435 Peptidase family M48 CDA09_RS00280 PF00989 PAS fold CDA09_RS00280 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS00280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS00285 PF00158 Sigma-54 interaction domain CDA09_RS00285 PF02954 Bacterial regulatory protein, Fis family CDA09_RS00285 PF00072 Response regulator receiver domain CDA09_RS00290 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CDA09_RS00310 PF12804 MobA-like NTP transferase domain CDA09_RS00315 PF02634 FdhD/NarQ family CDA09_RS00330 PF08331 Domain of unknown function (DUF1730) CDA09_RS00345 PF00384 Molybdopterin oxidoreductase CDA09_RS00345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_RS00345 PF12838 4Fe-4S dicluster domain CDA09_RS00345 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDA09_RS00345 PF01568 Molydopterin dinucleotide binding domain CDA09_RS00350 PF13247 4Fe-4S dicluster domain CDA09_RS00365 PF08534 Redoxin CDA09_RS00405 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDA09_RS00410 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS00415 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS00420 PF00005 ABC transporter CDA09_RS00425 PF08274 PhnA Zinc-Ribbon CDA09_RS00425 PF03831 PhnA domain CDA09_RS00440 PF01134 Glucose inhibited division protein A CDA09_RS00440 PF13932 GidA associated domain CDA09_RS00445 PF02527 rRNA small subunit methyltransferase G CDA09_RS00450 PF13614 AAA domain CDA09_RS00455 PF02195 ParB-like nuclease domain CDA09_RS00455 PF17762 HTH domain found in ParB protein CDA09_RS00465 PF00119 ATP synthase A chain CDA09_RS00470 PF00137 ATP synthase subunit C CDA09_RS00475 PF00430 ATP synthase B/B' CF(0) CDA09_RS00480 PF00213 ATP synthase delta (OSCP) subunit CDA09_RS00485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDA09_RS00485 PF00306 ATP synthase alpha/beta chain, C terminal domain CDA09_RS00485 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDA09_RS00490 PF00231 ATP synthase CDA09_RS00495 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDA09_RS00495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDA09_RS00500 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CDA09_RS00500 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CDA09_RS00515 PF01209 ubiE/COQ5 methyltransferase family CDA09_RS00525 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS00525 PF00072 Response regulator receiver domain CDA09_RS00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS00530 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS00530 PF00989 PAS fold CDA09_RS00530 PF11808 Phosphate regulon sensor protein PhoR CDA09_RS00545 PF13230 Glutamine amidotransferases class-II CDA09_RS00550 PF02637 GatB domain CDA09_RS00550 PF02934 GatB/GatE catalytic domain CDA09_RS00560 PF01425 Amidase CDA09_RS00565 PF02686 Glu-tRNAGln amidotransferase C subunit CDA09_RS00585 PF00905 Penicillin binding protein transpeptidase domain CDA09_RS00585 PF03717 Penicillin-binding Protein dimerisation domain CDA09_RS00590 PF01098 Cell cycle protein CDA09_RS00595 PF05036 Sporulation related domain CDA09_RS00595 PF03330 Lytic transglycolase CDA09_RS00600 PF00768 D-alanyl-D-alanine carboxypeptidase CDA09_RS00600 PF07943 Penicillin-binding protein 5, C-terminal domain CDA09_RS00605 PF01063 Amino-transferase class IV CDA09_RS00610 PF04359 Protein of unknown function (DUF493) CDA09_RS00615 PF03099 Biotin/lipoate A/B protein ligase family CDA09_RS00620 PF04055 Radical SAM superfamily CDA09_RS00620 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CDA09_RS00625 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDA09_RS00635 PF13361 UvrD-like helicase C-terminal domain CDA09_RS00635 PF00580 UvrD/REP helicase N-terminal domain CDA09_RS00640 PF02743 Cache domain CDA09_RS00640 PF00672 HAMP domain CDA09_RS00640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS00645 PF13247 4Fe-4S dicluster domain CDA09_RS00650 PF03916 Polysulphide reductase, NrfD CDA09_RS00655 PF01568 Molydopterin dinucleotide binding domain CDA09_RS00655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_RS00655 PF00384 Molybdopterin oxidoreductase CDA09_RS00660 PF00072 Response regulator receiver domain CDA09_RS00660 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS00665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS00665 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS00670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS00680 PF00072 Response regulator receiver domain CDA09_RS00685 PF00072 Response regulator receiver domain CDA09_RS00685 PF01627 Hpt domain CDA09_RS00685 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS00685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS00685 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDA09_RS00685 PF00672 HAMP domain CDA09_RS00715 PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain CDA09_RS00715 PF12728 Helix-turn-helix domain CDA09_RS00725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS00730 PF00271 Helicase conserved C-terminal domain CDA09_RS00730 PF00270 DEAD/DEAH box helicase CDA09_RS00750 PF00005 ABC transporter CDA09_RS00755 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS00755 PF00005 ABC transporter CDA09_RS00760 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS00760 PF11862 Domain of unknown function (DUF3382) CDA09_RS00765 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS00770 PF13458 Periplasmic binding protein CDA09_RS00775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS00775 PF03466 LysR substrate binding domain CDA09_RS00790 PF05724 Thiopurine S-methyltransferase (TPMT) CDA09_RS00795 PF03881 Fructosamine kinase CDA09_RS00810 PF07690 Major Facilitator Superfamily CDA09_RS00825 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_RS00825 PF17862 AAA+ lid domain CDA09_RS00825 PF01434 Peptidase family M41 CDA09_RS00825 PF06480 FtsH Extracellular CDA09_RS00840 PF05958 tRNA (Uracil-5-)-methyltransferase CDA09_RS00855 PF00182 Chitinase class I CDA09_RS00865 PF13416 Bacterial extracellular solute-binding protein CDA09_RS00870 PF08402 TOBE domain CDA09_RS00870 PF00005 ABC transporter CDA09_RS00875 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS00880 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS00885 PF00664 ABC transporter transmembrane region CDA09_RS00885 PF00005 ABC transporter CDA09_RS00895 PF09828 Chromate resistance exported protein CDA09_RS00900 PF02417 Chromate transporter CDA09_RS00910 PF09828 Chromate resistance exported protein CDA09_RS00915 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS00915 PF00072 Response regulator receiver domain CDA09_RS00930 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS00930 PF00672 HAMP domain CDA09_RS00930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS00935 PF00005 ABC transporter CDA09_RS00950 PF05433 Glycine zipper 2TM domain CDA09_RS00965 PF17946 RecC C-terminal domain CDA09_RS00970 PF13361 UvrD-like helicase C-terminal domain CDA09_RS00970 PF00580 UvrD/REP helicase N-terminal domain CDA09_RS00970 PF12705 PD-(D/E)XK nuclease superfamily CDA09_RS00975 PF13538 UvrD-like helicase C-terminal domain CDA09_RS00980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS00980 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS00980 PF00989 PAS fold CDA09_RS00985 PF00158 Sigma-54 interaction domain CDA09_RS00985 PF02954 Bacterial regulatory protein, Fis family CDA09_RS00985 PF00072 Response regulator receiver domain CDA09_RS00990 PF00482 Type II secretion system (T2SS), protein F CDA09_RS00995 PF07963 Prokaryotic N-terminal methylation motif CDA09_RS00995 PF08334 Type II secretion system (T2SS), protein G CDA09_RS01000 PF01551 Peptidase family M23 CDA09_RS01000 PF10145 Phage-related minor tail protein CDA09_RS01000 PF01464 Transglycosylase SLT domain CDA09_RS01045 PF00158 Sigma-54 interaction domain CDA09_RS01045 PF00072 Response regulator receiver domain CDA09_RS01045 PF02954 Bacterial regulatory protein, Fis family CDA09_RS01050 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDA09_RS01050 PF00437 Type II/IV secretion system protein CDA09_RS01075 PF00263 Bacterial type II and III secretion system protein CDA09_RS01075 PF03958 Bacterial type II/III secretion system short domain CDA09_RS01080 PF07963 Prokaryotic N-terminal methylation motif CDA09_RS01080 PF08334 Type II secretion system (T2SS), protein G CDA09_RS01085 PF00114 Pilin (bacterial filament) CDA09_RS01085 PF07963 Prokaryotic N-terminal methylation motif CDA09_RS01095 PF00313 'Cold-shock' DNA-binding domain CDA09_RS01105 PF16200 C-terminal region of band_7 CDA09_RS01105 PF01145 SPFH domain / Band 7 family CDA09_RS01135 PF07690 Major Facilitator Superfamily CDA09_RS01145 PF01841 Transglutaminase-like superfamily CDA09_RS01150 PF00578 AhpC/TSA family CDA09_RS01160 PF05981 CreA protein CDA09_RS01170 PF01323 DSBA-like thioredoxin domain CDA09_RS01175 PF00226 DnaJ domain CDA09_RS01175 PF01556 DnaJ C terminal domain CDA09_RS01200 PF00625 Guanylate kinase CDA09_RS01205 PF01192 RNA polymerase Rpb6 CDA09_RS01210 PF02824 TGS domain CDA09_RS01210 PF13291 ACT domain CDA09_RS01210 PF04607 Region found in RelA / SpoT proteins CDA09_RS01215 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDA09_RS01215 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDA09_RS01220 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS01220 PF00155 Aminotransferase class I and II CDA09_RS01235 PF00929 Exonuclease CDA09_RS01235 PF14579 Helix-hairpin-helix motif CDA09_RS01235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDA09_RS01235 PF02811 PHP domain CDA09_RS01235 PF14480 DNA polymerase III polC-type N-terminus I CDA09_RS01235 PF11490 DNA polymerase III polC-type N-terminus II CDA09_RS01235 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDA09_RS01245 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDA09_RS01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS01245 PF00672 HAMP domain CDA09_RS01245 PF07730 Histidine kinase CDA09_RS01250 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS01250 PF00072 Response regulator receiver domain CDA09_RS01265 PF01568 Molydopterin dinucleotide binding domain CDA09_RS01265 PF00384 Molybdopterin oxidoreductase CDA09_RS01265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_RS01270 PF12838 4Fe-4S dicluster domain CDA09_RS01270 PF12800 4Fe-4S binding domain CDA09_RS01275 PF12837 4Fe-4S binding domain CDA09_RS01275 PF12801 4Fe-4S binding domain CDA09_RS01280 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CDA09_RS01285 PF03264 NapC/NirT cytochrome c family, N-terminal region CDA09_RS01290 PF00005 ABC transporter CDA09_RS01295 PF03379 CcmB protein CDA09_RS01300 PF01578 Cytochrome C assembly protein CDA09_RS01305 PF04995 Heme exporter protein D (CcmD) CDA09_RS01310 PF03100 CcmE CDA09_RS01315 PF01578 Cytochrome C assembly protein CDA09_RS01315 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CDA09_RS01320 PF08534 Redoxin CDA09_RS01325 PF03918 Cytochrome C biogenesis protein CDA09_RS01330 PF03918 Cytochrome C biogenesis protein CDA09_RS01345 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS01355 PF00158 Sigma-54 interaction domain CDA09_RS01355 PF00072 Response regulator receiver domain CDA09_RS01355 PF02954 Bacterial regulatory protein, Fis family CDA09_RS01360 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS01360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS01375 PF08534 Redoxin CDA09_RS01385 PF01578 Cytochrome C assembly protein CDA09_RS01415 PF01578 Cytochrome C assembly protein CDA09_RS01470 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS01475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS01480 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CDA09_RS01480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS01480 PF00034 Cytochrome c CDA09_RS01500 PF00535 Glycosyl transferase family 2 CDA09_RS01505 PF14667 Polysaccharide biosynthesis C-terminal domain CDA09_RS01505 PF01943 Polysaccharide biosynthesis protein CDA09_RS01515 PF00535 Glycosyl transferase family 2 CDA09_RS01520 PF00535 Glycosyl transferase family 2 CDA09_RS01525 PF01370 NAD dependent epimerase/dehydratase family CDA09_RS01545 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS01545 PF08448 PAS fold CDA09_RS01555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDA09_RS01560 PF02310 B12 binding domain CDA09_RS01560 PF04055 Radical SAM superfamily CDA09_RS01570 PF00563 EAL domain CDA09_RS01570 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS01570 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS01575 PF01168 Alanine racemase, N-terminal domain CDA09_RS01575 PF00842 Alanine racemase, C-terminal domain CDA09_RS01580 PF01266 FAD dependent oxidoreductase CDA09_RS01585 PF01037 Lrp/AsnC ligand binding domain CDA09_RS01605 PF00884 Sulfatase CDA09_RS01625 PF00563 EAL domain CDA09_RS01625 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS01625 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS01630 PF01339 CheB methylesterase CDA09_RS01630 PF01739 CheR methyltransferase, SAM binding domain CDA09_RS01630 PF03705 CheR methyltransferase, all-alpha domain CDA09_RS01630 PF08448 PAS fold CDA09_RS01635 PF01584 CheW-like domain CDA09_RS01640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS01640 PF17202 Single cache domain 3 CDA09_RS01640 PF00672 HAMP domain CDA09_RS01645 PF01584 CheW-like domain CDA09_RS01645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS01645 PF01627 Hpt domain CDA09_RS01645 PF00072 Response regulator receiver domain CDA09_RS01650 PF00072 Response regulator receiver domain CDA09_RS01650 PF01339 CheB methylesterase CDA09_RS01655 PF08447 PAS fold CDA09_RS01655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS01655 PF08448 PAS fold CDA09_RS01660 PF00563 EAL domain CDA09_RS01660 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS01660 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS01670 PF00171 Aldehyde dehydrogenase family CDA09_RS01675 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS01680 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CDA09_RS01680 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS01680 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS01685 PF03061 Thioesterase superfamily CDA09_RS01690 PF00501 AMP-binding enzyme CDA09_RS01690 PF14535 AMP-binding enzyme C-terminal domain CDA09_RS01695 PF05138 Phenylacetic acid catabolic protein CDA09_RS01700 PF06243 Phenylacetic acid degradation B CDA09_RS01705 PF05138 Phenylacetic acid catabolic protein CDA09_RS01710 PF01883 Iron-sulfur cluster assembly protein CDA09_RS01715 PF00175 Oxidoreductase NAD-binding domain CDA09_RS01715 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS01715 PF00970 Oxidoreductase FAD-binding domain CDA09_RS01725 PF13458 Periplasmic binding protein CDA09_RS01735 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS01735 PF00005 ABC transporter CDA09_RS01740 PF00005 ABC transporter CDA09_RS01755 PF03466 LysR substrate binding domain CDA09_RS01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS01765 PF01661 Macro domain CDA09_RS01770 PF00171 Aldehyde dehydrogenase family CDA09_RS01775 PF00202 Aminotransferase class-III CDA09_RS01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS01780 PF03466 LysR substrate binding domain CDA09_RS01785 PF00216 Bacterial DNA-binding protein CDA09_RS01790 PF00270 DEAD/DEAH box helicase CDA09_RS01790 PF00271 Helicase conserved C-terminal domain CDA09_RS01795 PF01029 NusB family CDA09_RS01800 PF00885 6,7-dimethyl-8-ribityllumazine synthase CDA09_RS01805 PF00925 GTP cyclohydrolase II CDA09_RS01805 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDA09_RS01810 PF00677 Lumazine binding domain CDA09_RS01815 PF02683 Cytochrome C biogenesis protein transmembrane region CDA09_RS01815 PF11412 Disulphide bond corrector protein DsbC CDA09_RS01835 PF00072 Response regulator receiver domain CDA09_RS01835 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS01840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS01850 PF00072 Response regulator receiver domain CDA09_RS01850 PF17149 Periplasmic sensor domain found in signal transduction proteins CDA09_RS01850 PF00672 HAMP domain CDA09_RS01850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS01850 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS01850 PF01627 Hpt domain CDA09_RS01855 PF13458 Periplasmic binding protein CDA09_RS01865 PF00072 Response regulator receiver domain CDA09_RS01865 PF04397 LytTr DNA-binding domain CDA09_RS01875 PF00072 Response regulator receiver domain CDA09_RS01875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS01875 PF01627 Hpt domain CDA09_RS01875 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS01875 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDA09_RS01875 PF00672 HAMP domain CDA09_RS01880 PF01590 GAF domain CDA09_RS01880 PF00360 Phytochrome region CDA09_RS01880 PF00563 EAL domain CDA09_RS01880 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS01890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS01890 PF03466 LysR substrate binding domain CDA09_RS01895 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CDA09_RS01915 PF00175 Oxidoreductase NAD-binding domain CDA09_RS01915 PF00970 Oxidoreductase FAD-binding domain CDA09_RS01930 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDA09_RS01935 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDA09_RS01945 PF00510 Cytochrome c oxidase subunit III CDA09_RS01960 PF03741 Integral membrane protein TerC family CDA09_RS01975 PF09350 Domain of unknown function (DUF1992) CDA09_RS01980 PF01061 ABC-2 type transporter CDA09_RS01985 PF00005 ABC transporter CDA09_RS01990 PF13417 Glutathione S-transferase, N-terminal domain CDA09_RS01990 PF00043 Glutathione S-transferase, C-terminal domain CDA09_RS01995 PF12697 Alpha/beta hydrolase family CDA09_RS02010 PF02036 SCP-2 sterol transfer family CDA09_RS02015 PF01136 Peptidase family U32 CDA09_RS02020 PF01136 Peptidase family U32 CDA09_RS02040 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS02040 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS02040 PF00563 EAL domain CDA09_RS02045 PF03190 Protein of unknown function, DUF255 CDA09_RS02065 PF12849 PBP superfamily domain CDA09_RS02075 PF00005 ABC transporter CDA09_RS02080 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS02085 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS02090 PF12849 PBP superfamily domain CDA09_RS02100 PF02625 XdhC and CoxI family CDA09_RS02100 PF13478 XdhC Rossmann domain CDA09_RS02105 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDA09_RS02105 PF00941 FAD binding domain in molybdopterin dehydrogenase CDA09_RS02110 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDA09_RS02110 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDA09_RS02115 PF01799 [2Fe-2S] binding domain CDA09_RS02115 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS02120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_RS02130 PF05199 GMC oxidoreductase CDA09_RS02130 PF00732 GMC oxidoreductase CDA09_RS02145 PF00202 Aminotransferase class-III CDA09_RS02150 PF03109 ABC1 family CDA09_RS02155 PF00750 tRNA synthetases class I (R) CDA09_RS02155 PF05746 DALR anticodon binding domain CDA09_RS02155 PF03485 Arginyl tRNA synthetase N terminal domain CDA09_RS02165 PF01323 DSBA-like thioredoxin domain CDA09_RS02170 PF00106 short chain dehydrogenase CDA09_RS02175 PF05088 Bacterial NAD-glutamate dehydrogenase CDA09_RS02185 PF12392 Collagenase CDA09_RS02185 PF01136 Peptidase family U32 CDA09_RS02230 PF02705 K+ potassium transporter CDA09_RS02235 PF01497 Periplasmic binding protein CDA09_RS02245 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CDA09_RS02245 PF00561 alpha/beta hydrolase fold CDA09_RS02250 PF00753 Metallo-beta-lactamase superfamily CDA09_RS02255 PF13411 MerR HTH family regulatory protein CDA09_RS02260 PF00484 Carbonic anhydrase CDA09_RS02265 PF00108 Thiolase, N-terminal domain CDA09_RS02265 PF02803 Thiolase, C-terminal domain CDA09_RS02270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS02270 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS02270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS02275 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS02280 PF00682 HMGL-like CDA09_RS02295 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDA09_RS02295 PF00753 Metallo-beta-lactamase superfamily CDA09_RS02300 PF03668 P-loop ATPase protein family CDA09_RS02320 PF02075 Crossover junction endodeoxyribonuclease RuvC CDA09_RS02335 PF00375 Sodium:dicarboxylate symporter family CDA09_RS02345 PF01709 Transcriptional regulator CDA09_RS02355 PF05872 Bacterial protein of unknown function (DUF853) CDA09_RS02370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS02375 PF02219 Methylenetetrahydrofolate reductase CDA09_RS02380 PF05221 S-adenosyl-L-homocysteine hydrolase CDA09_RS02380 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDA09_RS02390 PF00313 'Cold-shock' DNA-binding domain CDA09_RS02395 PF01176 Translation initiation factor 1A / IF-1 CDA09_RS02405 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDA09_RS02405 PF02772 S-adenosylmethionine synthetase, central domain CDA09_RS02405 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDA09_RS02415 PF03279 Bacterial lipid A biosynthesis acyltransferase CDA09_RS02420 PF01678 Diaminopimelate epimerase CDA09_RS02430 PF00589 Phage integrase family CDA09_RS02430 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_RS02440 PF10672 S-adenosylmethionine-dependent methyltransferase CDA09_RS02440 PF17785 PUA-like domain CDA09_RS02450 PF17864 RuvB AAA lid domain CDA09_RS02450 PF05496 Holliday junction DNA helicase RuvB P-loop domain CDA09_RS02450 PF05491 RuvB C-terminal winged helix domain CDA09_RS02455 PF07499 RuvA, C-terminal domain CDA09_RS02455 PF01330 RuvA N terminal domain CDA09_RS02465 PF00575 S1 RNA binding domain CDA09_RS02465 PF10150 Ribonuclease E/G family CDA09_RS02470 PF02545 Maf-like protein CDA09_RS02475 PF02590 Predicted SPOUT methyltransferase CDA09_RS02485 PF01467 Cytidylyltransferase-like CDA09_RS02500 PF01636 Phosphotransferase enzyme family CDA09_RS02510 PF03641 Possible lysine decarboxylase CDA09_RS02515 PF01367 5'-3' exonuclease, C-terminal SAM fold CDA09_RS02515 PF00476 DNA polymerase family A CDA09_RS02515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDA09_RS02515 PF01612 3'-5' exonuclease CDA09_RS02520 PF16861 Carbamoyltransferase C-terminus CDA09_RS02520 PF02543 Carbamoyltransferase N-terminus CDA09_RS02525 PF01522 Polysaccharide deacetylase CDA09_RS02535 PF13439 Glycosyltransferase Family 4 CDA09_RS02535 PF00534 Glycosyl transferases group 1 CDA09_RS02540 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CDA09_RS02550 PF13439 Glycosyltransferase Family 4 CDA09_RS02550 PF00534 Glycosyl transferases group 1 CDA09_RS02555 PF13439 Glycosyltransferase Family 4 CDA09_RS02560 PF00534 Glycosyl transferases group 1 CDA09_RS02570 PF00733 Asparagine synthase CDA09_RS02570 PF13537 Glutamine amidotransferase domain CDA09_RS02575 PF00534 Glycosyl transferases group 1 CDA09_RS02575 PF13439 Glycosyltransferase Family 4 CDA09_RS02585 PF00005 ABC transporter CDA09_RS02585 PF00664 ABC transporter transmembrane region CDA09_RS02595 PF01370 NAD dependent epimerase/dehydratase family CDA09_RS02600 PF01467 Cytidylyltransferase-like CDA09_RS02600 PF00294 pfkB family carbohydrate kinase CDA09_RS02605 PF05175 Methyltransferase small domain CDA09_RS02605 PF17827 PrmC N-terminal domain CDA09_RS02610 PF02654 Cobalamin-5-phosphate synthase CDA09_RS02615 PF02277 Phosphoribosyltransferase CDA09_RS02620 PF00563 EAL domain CDA09_RS02620 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS02620 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS02625 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CDA09_RS02630 PF07715 TonB-dependent Receptor Plug Domain CDA09_RS02630 PF00593 TonB dependent receptor CDA09_RS02635 PF01032 FecCD transport family CDA09_RS02640 PF00005 ABC transporter CDA09_RS02645 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CDA09_RS02645 PF12557 Cob(I)alamin adenosyltransferase N terminal CDA09_RS02650 PF14824 Sirohaem biosynthesis protein central CDA09_RS02650 PF10414 Sirohaem synthase dimerisation region CDA09_RS02650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_RS02655 PF07685 CobB/CobQ-like glutamine amidotransferase domain CDA09_RS02655 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDA09_RS02660 PF03352 Methyladenine glycosylase CDA09_RS02665 PF03466 LysR substrate binding domain CDA09_RS02665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS02670 PF04336 Acyl carrier protein phosphodiesterase CDA09_RS02680 PF02589 LUD domain CDA09_RS02685 PF11870 Domain of unknown function (DUF3390) CDA09_RS02685 PF13183 4Fe-4S dicluster domain CDA09_RS02685 PF02589 LUD domain CDA09_RS02690 PF02754 Cysteine-rich domain CDA09_RS02695 PF00892 EamA-like transporter family CDA09_RS02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS02705 PF03466 LysR substrate binding domain CDA09_RS02710 PF08497 Radical SAM N-terminal CDA09_RS02710 PF04055 Radical SAM superfamily CDA09_RS02710 PF11842 Domain of unknown function (DUF3362) CDA09_RS02715 PF01510 N-acetylmuramoyl-L-alanine amidase CDA09_RS02720 PF01464 Transglycosylase SLT domain CDA09_RS02720 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CDA09_RS02725 PF00155 Aminotransferase class I and II CDA09_RS02735 PF01515 Phosphate acetyl/butaryl transferase CDA09_RS02735 PF00390 Malic enzyme, N-terminal domain CDA09_RS02735 PF03949 Malic enzyme, NAD binding domain CDA09_RS02745 PF00768 D-alanyl-D-alanine carboxypeptidase CDA09_RS02755 PF00849 RNA pseudouridylate synthase CDA09_RS02755 PF01479 S4 domain CDA09_RS02765 PF02687 FtsX-like permease family CDA09_RS02765 PF00005 ABC transporter CDA09_RS02765 PF12704 MacB-like periplasmic core domain CDA09_RS02770 PF00005 ABC transporter CDA09_RS02770 PF02687 FtsX-like permease family CDA09_RS02770 PF12704 MacB-like periplasmic core domain CDA09_RS02775 PF12704 MacB-like periplasmic core domain CDA09_RS02775 PF02687 FtsX-like permease family CDA09_RS02775 PF00005 ABC transporter CDA09_RS02780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_RS02780 PF00529 HlyD membrane-fusion protein of T1SS CDA09_RS02785 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CDA09_RS02785 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDA09_RS02790 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CDA09_RS02810 PF11898 Domain of unknown function (DUF3418) CDA09_RS02810 PF00270 DEAD/DEAH box helicase CDA09_RS02810 PF00271 Helicase conserved C-terminal domain CDA09_RS02810 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CDA09_RS02810 PF04408 Helicase associated domain (HA2) CDA09_RS02815 PF01250 Ribosomal protein S6 CDA09_RS02825 PF01084 Ribosomal protein S18 CDA09_RS02830 PF01281 Ribosomal protein L9, N-terminal domain CDA09_RS02830 PF03948 Ribosomal protein L9, C-terminal domain CDA09_RS02835 PF03796 DnaB-like helicase C terminal domain CDA09_RS02835 PF00772 DnaB-like helicase N terminal domain CDA09_RS02865 PF07859 alpha/beta hydrolase fold CDA09_RS02870 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDA09_RS02870 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDA09_RS02870 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDA09_RS02885 PF00005 ABC transporter CDA09_RS02885 PF16326 ABC transporter C-terminal domain CDA09_RS02885 PF12848 ABC transporter CDA09_RS02895 PF04011 LemA family CDA09_RS02905 PF00107 Zinc-binding dehydrogenase CDA09_RS02910 PF00072 Response regulator receiver domain CDA09_RS02910 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS02915 PF00501 AMP-binding enzyme CDA09_RS02915 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS02915 PF16177 Acetyl-coenzyme A synthetase N-terminus CDA09_RS02925 PF01464 Transglycosylase SLT domain CDA09_RS02930 PF00482 Type II secretion system (T2SS), protein F CDA09_RS02935 PF00437 Type II/IV secretion system protein CDA09_RS02955 PF03958 Bacterial type II/III secretion system short domain CDA09_RS02955 PF00263 Bacterial type II and III secretion system protein CDA09_RS02960 PF08334 Type II secretion system (T2SS), protein G CDA09_RS02960 PF07963 Prokaryotic N-terminal methylation motif CDA09_RS02965 PF00114 Pilin (bacterial filament) CDA09_RS02965 PF07963 Prokaryotic N-terminal methylation motif CDA09_RS02975 PF00696 Amino acid kinase family CDA09_RS02975 PF01472 PUA domain CDA09_RS02980 PF01926 50S ribosome-binding GTPase CDA09_RS02980 PF01018 GTP1/OBG CDA09_RS02985 PF01016 Ribosomal L27 protein CDA09_RS02990 PF00829 Ribosomal prokaryotic L21 protein CDA09_RS02995 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS02995 PF07840 FadR C-terminal domain CDA09_RS03000 PF02913 FAD linked oxidases, C-terminal domain CDA09_RS03000 PF01565 FAD binding domain CDA09_RS03005 PF01565 FAD binding domain CDA09_RS03010 PF02754 Cysteine-rich domain CDA09_RS03010 PF13183 4Fe-4S dicluster domain CDA09_RS03020 PF01544 CorA-like Mg2+ transporter protein CDA09_RS03025 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDA09_RS03025 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDA09_RS03030 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CDA09_RS03035 PF02233 NAD(P) transhydrogenase beta subunit CDA09_RS03045 PF13188 PAS domain CDA09_RS03045 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS03045 PF00563 EAL domain CDA09_RS03045 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS03050 PF00271 Helicase conserved C-terminal domain CDA09_RS03050 PF00270 DEAD/DEAH box helicase CDA09_RS03055 PF01728 FtsJ-like methyltransferase CDA09_RS03055 PF18125 RlmM ferredoxin-like domain CDA09_RS03070 PF03009 Glycerophosphoryl diester phosphodiesterase family CDA09_RS03075 PF00348 Polyprenyl synthetase CDA09_RS03090 PF04264 YceI-like domain CDA09_RS03095 PF04752 ChaC-like protein CDA09_RS03105 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CDA09_RS03110 PF03264 NapC/NirT cytochrome c family, N-terminal region CDA09_RS03120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS03120 PF03466 LysR substrate binding domain CDA09_RS03125 PF17954 Quercetinase C-terminal cupin domain CDA09_RS03125 PF02678 Pirin CDA09_RS03130 PF07690 Major Facilitator Superfamily CDA09_RS03135 PF01546 Peptidase family M20/M25/M40 CDA09_RS03135 PF07687 Peptidase dimerisation domain CDA09_RS03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS03140 PF03466 LysR substrate binding domain CDA09_RS03150 PF00873 AcrB/AcrD/AcrF family CDA09_RS03155 PF00529 HlyD membrane-fusion protein of T1SS CDA09_RS03155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_RS03170 PF03466 LysR substrate binding domain CDA09_RS03170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS03175 PF01597 Glycine cleavage H-protein CDA09_RS03180 PF02347 Glycine cleavage system P-protein CDA09_RS03185 PF00464 Serine hydroxymethyltransferase CDA09_RS03190 PF00324 Amino acid permease CDA09_RS03195 PF03315 Serine dehydratase beta chain CDA09_RS03195 PF03313 Serine dehydratase alpha chain CDA09_RS03200 PF01571 Aminomethyltransferase folate-binding domain CDA09_RS03200 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDA09_RS03205 PF04055 Radical SAM superfamily CDA09_RS03215 PF00551 Formyl transferase CDA09_RS03220 PF00425 chorismate binding enzyme CDA09_RS03220 PF04715 Anthranilate synthase component I, N terminal region CDA09_RS03225 PF00682 HMGL-like CDA09_RS03225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDA09_RS03225 PF02436 Conserved carboxylase domain CDA09_RS03225 PF00364 Biotin-requiring enzyme CDA09_RS03225 PF00289 Biotin carboxylase, N-terminal domain CDA09_RS03225 PF02785 Biotin carboxylase C-terminal domain CDA09_RS03270 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS03285 PF01575 MaoC like domain CDA09_RS03290 PF02649 Type I GTP cyclohydrolase folE2 CDA09_RS03295 PF02780 Transketolase, C-terminal domain CDA09_RS03295 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CDA09_RS03295 PF02779 Transketolase, pyrimidine binding domain CDA09_RS03300 PF00348 Polyprenyl synthetase CDA09_RS03305 PF02609 Exonuclease VII small subunit CDA09_RS03315 PF02401 LytB protein CDA09_RS03320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDA09_RS03325 PF01252 Signal peptidase (SPase) II CDA09_RS03330 PF06827 Zinc finger found in FPG and IleRS CDA09_RS03330 PF00133 tRNA synthetases class I (I, L, M and V) CDA09_RS03330 PF08264 Anticodon-binding domain of tRNA CDA09_RS03335 PF01687 Riboflavin kinase CDA09_RS03335 PF06574 FAD synthetase CDA09_RS03340 PF01520 N-acetylmuramoyl-L-alanine amidase CDA09_RS03340 PF11741 AMIN domain CDA09_RS03345 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CDA09_RS03350 PF08331 Domain of unknown function (DUF1730) CDA09_RS03355 PF01177 Asp/Glu/Hydantoin racemase CDA09_RS03360 PF00581 Rhodanese-like domain CDA09_RS03370 PF00892 EamA-like transporter family CDA09_RS03375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDA09_RS03375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDA09_RS03380 PF01266 FAD dependent oxidoreductase CDA09_RS03380 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CDA09_RS03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS03390 PF03466 LysR substrate binding domain CDA09_RS03395 PF00672 HAMP domain CDA09_RS03395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS03395 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS03395 PF16527 Two-component sensor protein CpxA, periplasmic domain CDA09_RS03400 PF00072 Response regulator receiver domain CDA09_RS03400 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS03410 PF00463 Isocitrate lyase family CDA09_RS03415 PF03737 Aldolase/RraA CDA09_RS03420 PF10431 C-terminal, D2-small domain, of ClpB protein CDA09_RS03420 PF02861 Clp amino terminal domain, pathogenicity island component CDA09_RS03420 PF17871 AAA lid domain CDA09_RS03420 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_RS03420 PF07724 AAA domain (Cdc48 subfamily) CDA09_RS03425 PF02617 ATP-dependent Clp protease adaptor protein ClpS CDA09_RS03430 PF00313 'Cold-shock' DNA-binding domain CDA09_RS03435 PF00471 Ribosomal protein L33 CDA09_RS03440 PF00830 Ribosomal L28 family CDA09_RS03445 PF04002 RadC-like JAB domain CDA09_RS03450 PF02441 Flavoprotein CDA09_RS03450 PF04127 DNA / pantothenate metabolism flavoprotein CDA09_RS03455 PF00692 dUTPase CDA09_RS03460 PF09297 NADH pyrophosphatase zinc ribbon domain CDA09_RS03460 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CDA09_RS03460 PF00293 NUDIX domain CDA09_RS03465 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CDA09_RS03465 PF10518 TAT (twin-arginine translocation) pathway signal sequence CDA09_RS03465 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS03485 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CDA09_RS03490 PF03971 Monomeric isocitrate dehydrogenase CDA09_RS03495 PF00180 Isocitrate/isopropylmalate dehydrogenase CDA09_RS03505 PF03144 Elongation factor Tu domain 2 CDA09_RS03505 PF00679 Elongation factor G C-terminus CDA09_RS03505 PF14492 Elongation Factor G, domain II CDA09_RS03505 PF03764 Elongation factor G, domain IV CDA09_RS03505 PF00009 Elongation factor Tu GTP binding domain CDA09_RS03515 PF04172 LrgB-like family CDA09_RS03525 PF00593 TonB dependent receptor CDA09_RS03525 PF07715 TonB-dependent Receptor Plug Domain CDA09_RS03540 PF01274 Malate synthase CDA09_RS03550 PF13419 Haloacid dehalogenase-like hydrolase CDA09_RS03555 PF03466 LysR substrate binding domain CDA09_RS03555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS03570 PF14403 Circularly permuted ATP-grasp type 2 CDA09_RS03575 PF14403 Circularly permuted ATP-grasp type 2 CDA09_RS03575 PF04168 A predicted alpha-helical domain with a conserved ER motif. CDA09_RS03590 PF14403 Circularly permuted ATP-grasp type 2 CDA09_RS03590 PF04168 A predicted alpha-helical domain with a conserved ER motif. CDA09_RS03595 PF08379 Bacterial transglutaminase-like N-terminal region CDA09_RS03595 PF01841 Transglutaminase-like superfamily CDA09_RS03610 PF04717 Type VI secretion system, phage-baseplate injector CDA09_RS03610 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CDA09_RS03610 PF13296 Putative type VI secretion system Rhs element Vgr CDA09_RS03620 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CDA09_RS03635 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 CDA09_RS03640 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CDA09_RS03655 PF05947 Type VI secretion system, TssF CDA09_RS03665 PF10431 C-terminal, D2-small domain, of ClpB protein CDA09_RS03665 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_RS03665 PF07724 AAA domain (Cdc48 subfamily) CDA09_RS03665 PF17871 AAA lid domain CDA09_RS03675 PF03979 Sigma-70 factor, region 1.1 CDA09_RS03675 PF00140 Sigma-70 factor, region 1.2 CDA09_RS03675 PF04539 Sigma-70 region 3 CDA09_RS03675 PF04545 Sigma-70, region 4 CDA09_RS03675 PF04546 Sigma-70, non-essential region CDA09_RS03675 PF04542 Sigma-70 region 2 CDA09_RS03680 PF08278 DNA primase DnaG DnaB-binding CDA09_RS03680 PF10410 DnaB-helicase binding domain of primase CDA09_RS03680 PF01807 CHC2 zinc finger CDA09_RS03680 PF08275 DNA primase catalytic core, N-terminal domain CDA09_RS03690 PF01165 Ribosomal protein S21 CDA09_RS03695 PF00814 Glycoprotease family CDA09_RS03700 PF02660 Glycerol-3-phosphate acyltransferase CDA09_RS03715 PF04073 Aminoacyl-tRNA editing domain CDA09_RS03720 PF00589 Phage integrase family CDA09_RS03720 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_RS03725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDA09_RS03725 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDA09_RS03730 PF00171 Aldehyde dehydrogenase family CDA09_RS03735 PF06144 DNA polymerase III, delta subunit CDA09_RS03735 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CDA09_RS03740 PF04390 Lipopolysaccharide-assembly CDA09_RS03745 PF13603 Leucyl-tRNA synthetase, Domain 2 CDA09_RS03745 PF08264 Anticodon-binding domain of tRNA CDA09_RS03745 PF00133 tRNA synthetases class I (I, L, M and V) CDA09_RS03745 PF09334 tRNA synthetases class I (M) CDA09_RS03755 PF13361 UvrD-like helicase C-terminal domain CDA09_RS03755 PF00580 UvrD/REP helicase N-terminal domain CDA09_RS03760 PF13614 AAA domain CDA09_RS03765 PF03949 Malic enzyme, NAD binding domain CDA09_RS03765 PF00390 Malic enzyme, N-terminal domain CDA09_RS03765 PF01515 Phosphate acetyl/butaryl transferase CDA09_RS03775 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_RS03775 PF00107 Zinc-binding dehydrogenase CDA09_RS03785 PF02811 PHP domain CDA09_RS03785 PF14579 Helix-hairpin-helix motif CDA09_RS03785 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDA09_RS03785 PF01336 OB-fold nucleic acid binding domain CDA09_RS03785 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDA09_RS03790 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDA09_RS03790 PF00578 AhpC/TSA family CDA09_RS03795 PF00708 Acylphosphatase CDA09_RS03800 PF00916 Sulfate permease family CDA09_RS03800 PF01740 STAS domain CDA09_RS03805 PF01588 Putative tRNA binding domain CDA09_RS03805 PF09334 tRNA synthetases class I (M) CDA09_RS03810 PF00691 OmpA family CDA09_RS03810 PF05736 OprF membrane domain CDA09_RS03815 PF10609 NUBPL iron-transfer P-loop NTPase CDA09_RS03820 PF00692 dUTPase CDA09_RS03825 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CDA09_RS03825 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CDA09_RS03825 PF01276 Orn/Lys/Arg decarboxylase, major domain CDA09_RS03830 PF00186 Dihydrofolate reductase CDA09_RS03835 PF00303 Thymidylate synthase CDA09_RS03870 PF01494 FAD binding domain CDA09_RS03875 PF13098 Thioredoxin-like domain CDA09_RS03875 PF10411 Disulfide bond isomerase protein N-terminus CDA09_RS03880 PF03562 MltA specific insert domain CDA09_RS03880 PF06725 3D domain CDA09_RS03890 PF00293 NUDIX domain CDA09_RS03895 PF03884 DNA gyrase inhibitor YacG CDA09_RS03900 PF07072 Cell division protein CDA09_RS03905 PF01121 Dephospho-CoA kinase CDA09_RS03915 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_RS03920 PF03309 Type III pantothenate kinase CDA09_RS03925 PF08279 HTH domain CDA09_RS03925 PF02237 Biotin protein ligase C terminal domain CDA09_RS03925 PF03099 Biotin/lipoate A/B protein ligase family CDA09_RS03930 PF02954 Bacterial regulatory protein, Fis family CDA09_RS03930 PF00072 Response regulator receiver domain CDA09_RS03930 PF00158 Sigma-54 interaction domain CDA09_RS03935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS03935 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS03935 PF00989 PAS fold CDA09_RS03945 PF03951 Glutamine synthetase, beta-Grasp domain CDA09_RS03945 PF00120 Glutamine synthetase, catalytic domain CDA09_RS03950 PF16916 Dimerisation domain of Zinc Transporter CDA09_RS03950 PF01545 Cation efflux family CDA09_RS03955 PF00581 Rhodanese-like domain CDA09_RS03960 PF02445 Quinolinate synthetase A protein CDA09_RS03965 PF03372 Endonuclease/Exonuclease/phosphatase family CDA09_RS03970 PF13091 PLD-like domain CDA09_RS03980 PF00106 short chain dehydrogenase CDA09_RS03985 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDA09_RS03995 PF00535 Glycosyl transferase family 2 CDA09_RS04010 PF00849 RNA pseudouridylate synthase CDA09_RS04015 PF06071 Protein of unknown function (DUF933) CDA09_RS04015 PF01926 50S ribosome-binding GTPase CDA09_RS04020 PF01195 Peptidyl-tRNA hydrolase CDA09_RS04025 PF14693 Ribosomal protein TL5, C-terminal domain CDA09_RS04025 PF01386 Ribosomal L25p family CDA09_RS04030 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDA09_RS04030 PF14572 Phosphoribosyl synthetase-associated domain CDA09_RS04040 PF08544 GHMP kinases C terminal CDA09_RS04040 PF00288 GHMP kinases N terminal domain CDA09_RS04045 PF03550 Outer membrane lipoprotein LolB CDA09_RS04055 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CDA09_RS04055 PF06827 Zinc finger found in FPG and IleRS CDA09_RS04055 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CDA09_RS04060 PF00350 Dynamin family CDA09_RS04065 PF00037 4Fe-4S binding domain CDA09_RS04070 PF01467 Cytidylyltransferase-like CDA09_RS04085 PF00675 Insulinase (Peptidase family M16) CDA09_RS04085 PF05193 Peptidase M16 inactive domain CDA09_RS04090 PF02881 SRP54-type protein, helical bundle domain CDA09_RS04090 PF00448 SRP54-type protein, GTPase domain CDA09_RS04095 PF00005 ABC transporter CDA09_RS04100 PF18075 FtsX extracellular domain CDA09_RS04110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS04110 PF13426 PAS domain CDA09_RS04110 PF00072 Response regulator receiver domain CDA09_RS04120 PF03061 Thioesterase superfamily CDA09_RS04125 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDA09_RS04125 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDA09_RS04150 PF00919 Uncharacterized protein family UPF0004 CDA09_RS04150 PF04055 Radical SAM superfamily CDA09_RS04150 PF01938 TRAM domain CDA09_RS04155 PF02562 PhoH-like protein CDA09_RS04160 PF02130 Uncharacterized protein family UPF0054 CDA09_RS04165 PF00571 CBS domain CDA09_RS04165 PF03471 Transporter associated domain CDA09_RS04170 PF00795 Carbon-nitrogen hydrolase CDA09_RS04175 PF02091 Glycyl-tRNA synthetase alpha subunit CDA09_RS04180 PF05746 DALR anticodon binding domain CDA09_RS04180 PF02092 Glycyl-tRNA synthetase beta subunit CDA09_RS04190 PF01553 Acyltransferase CDA09_RS04200 PF00437 Type II/IV secretion system protein CDA09_RS04210 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS04225 PF00571 CBS domain CDA09_RS04225 PF01380 SIS domain CDA09_RS04230 PF02080 TrkA-C domain CDA09_RS04230 PF02254 TrkA-N domain CDA09_RS04230 PF00999 Sodium/hydrogen exchanger family CDA09_RS04235 PF00005 ABC transporter CDA09_RS04240 PF02405 Permease MlaE CDA09_RS04245 PF02470 MlaD protein CDA09_RS04250 PF04333 MlaA lipoprotein CDA09_RS04265 PF00005 ABC transporter CDA09_RS04270 PF01061 ABC-2 type transporter CDA09_RS04280 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDA09_RS04285 PF14760 Rnk N-terminus CDA09_RS04285 PF01272 Transcription elongation factor, GreA/GreB, C-term CDA09_RS04290 PF01634 ATP phosphoribosyltransferase CDA09_RS04295 PF00815 Histidinol dehydrogenase CDA09_RS04300 PF00155 Aminotransferase class I and II CDA09_RS04305 PF00475 Imidazoleglycerol-phosphate dehydratase CDA09_RS04310 PF00117 Glutamine amidotransferase class-I CDA09_RS04315 PF00977 Histidine biosynthesis protein CDA09_RS04320 PF00977 Histidine biosynthesis protein CDA09_RS04325 PF01502 Phosphoribosyl-AMP cyclohydrolase CDA09_RS04330 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CDA09_RS04340 PF02416 mttA/Hcf106 family CDA09_RS04345 PF02416 mttA/Hcf106 family CDA09_RS04350 PF00902 Sec-independent protein translocase protein (TatC) CDA09_RS04355 PF13180 PDZ domain CDA09_RS04355 PF17820 PDZ domain CDA09_RS04360 PF01784 NIF3 (NGG1p interacting factor 3) CDA09_RS04375 PF08442 ATP-grasp domain CDA09_RS04375 PF00549 CoA-ligase CDA09_RS04380 PF02629 CoA binding domain CDA09_RS04380 PF00549 CoA-ligase CDA09_RS04385 PF00672 HAMP domain CDA09_RS04385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS04385 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDA09_RS04385 PF00072 Response regulator receiver domain CDA09_RS04385 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS04385 PF01627 Hpt domain CDA09_RS04390 PF08534 Redoxin CDA09_RS04400 PF01384 Phosphate transporter family CDA09_RS04405 PF00334 Nucleoside diphosphate kinase CDA09_RS04410 PF04055 Radical SAM superfamily CDA09_RS04420 PF13464 Domain of unknown function (DUF4115) CDA09_RS04425 PF04551 GcpE protein CDA09_RS04430 PF03129 Anticodon binding domain CDA09_RS04430 PF13393 Histidyl-tRNA synthetase CDA09_RS04435 PF09976 Tetratricopeptide repeat-like domain CDA09_RS04440 PF13360 PQQ-like domain CDA09_RS04445 PF01926 50S ribosome-binding GTPase CDA09_RS04445 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CDA09_RS04450 PF17209 Hfq protein CDA09_RS04455 PF16360 GTP-binding GTPase Middle Region CDA09_RS04455 PF13167 GTP-binding GTPase N-terminal CDA09_RS04455 PF01926 50S ribosome-binding GTPase CDA09_RS04460 PF12221 Bacterial membrane protein N terminal CDA09_RS04460 PF01145 SPFH domain / Band 7 family CDA09_RS04465 PF01145 SPFH domain / Band 7 family CDA09_RS04475 PF13393 Histidyl-tRNA synthetase CDA09_RS04480 PF00709 Adenylosuccinate synthetase CDA09_RS04495 PF00773 RNB domain CDA09_RS04495 PF08206 Ribonuclease B OB domain CDA09_RS04495 PF08461 Ribonuclease R winged-helix domain CDA09_RS04495 PF00575 S1 RNA binding domain CDA09_RS04495 PF17876 Cold shock domain CDA09_RS04500 PF00588 SpoU rRNA Methylase family CDA09_RS04500 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDA09_RS04505 PF03861 ANTAR domain CDA09_RS04505 PF08376 Nitrate and nitrite sensing CDA09_RS04515 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CDA09_RS04520 PF04055 Radical SAM superfamily CDA09_RS04520 PF13186 Iron-sulfur cluster-binding domain CDA09_RS04530 PF00266 Aminotransferase class-V CDA09_RS04535 PF01180 Dihydroorotate dehydrogenase CDA09_RS04545 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS04550 PF00005 ABC transporter CDA09_RS04555 PF05175 Methyltransferase small domain CDA09_RS04560 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDA09_RS04560 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDA09_RS04560 PF04324 BFD-like [2Fe-2S] binding domain CDA09_RS04560 PF18267 Rubredoxin NAD+ reductase C-terminal domain CDA09_RS04560 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS04565 PF00355 Rieske [2Fe-2S] domain CDA09_RS04570 PF07690 Major Facilitator Superfamily CDA09_RS04575 PF00069 Protein kinase domain CDA09_RS04580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_RS04580 PF04324 BFD-like [2Fe-2S] binding domain CDA09_RS04580 PF00384 Molybdopterin oxidoreductase CDA09_RS04580 PF01568 Molydopterin dinucleotide binding domain CDA09_RS04585 PF08447 PAS fold CDA09_RS04585 PF08448 PAS fold CDA09_RS04585 PF00563 EAL domain CDA09_RS04585 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS04590 PF00501 AMP-binding enzyme CDA09_RS04590 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS04605 PF01734 Patatin-like phospholipase CDA09_RS04615 PF12170 DNA polymerase III tau subunit V interacting with alpha CDA09_RS04615 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CDA09_RS04615 PF12169 DNA polymerase III subunits gamma and tau domain III CDA09_RS04620 PF02575 YbaB/EbfC DNA-binding family CDA09_RS04625 PF02132 RecR protein CDA09_RS04625 PF13662 Toprim domain CDA09_RS04630 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CDA09_RS04630 PF00355 Rieske [2Fe-2S] domain CDA09_RS04635 PF00032 Cytochrome b(C-terminal)/b6/petD CDA09_RS04635 PF00033 Cytochrome b/b6/petB CDA09_RS04640 PF02167 Cytochrome C1 family CDA09_RS04645 PF02798 Glutathione S-transferase, N-terminal domain CDA09_RS04645 PF00043 Glutathione S-transferase, C-terminal domain CDA09_RS04650 PF04386 Stringent starvation protein B CDA09_RS04655 PF00534 Glycosyl transferases group 1 CDA09_RS04655 PF13439 Glycosyltransferase Family 4 CDA09_RS04660 PF01266 FAD dependent oxidoreductase CDA09_RS04665 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CDA09_RS04670 PF01037 Lrp/AsnC ligand binding domain CDA09_RS04675 PF00171 Aldehyde dehydrogenase family CDA09_RS04675 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CDA09_RS04675 PF14850 DNA-binding domain of Proline dehydrogenase CDA09_RS04675 PF01619 Proline dehydrogenase CDA09_RS04690 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS04690 PF00563 EAL domain CDA09_RS04690 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS04695 PF01966 HD domain CDA09_RS04695 PF11871 Domain of unknown function (DUF3391) CDA09_RS04700 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS04700 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS04700 PF00563 EAL domain CDA09_RS04705 PF00155 Aminotransferase class I and II CDA09_RS04710 PF03480 Bacterial extracellular solute-binding protein, family 7 CDA09_RS04715 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDA09_RS04720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS04720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS04720 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS04745 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS04745 PF07729 FCD domain CDA09_RS04750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_RS04750 PF00205 Thiamine pyrophosphate enzyme, central domain CDA09_RS04750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDA09_RS04755 PF00501 AMP-binding enzyme CDA09_RS04755 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS04760 PF03547 Membrane transport protein CDA09_RS04765 PF00355 Rieske [2Fe-2S] domain CDA09_RS04770 PF13360 PQQ-like domain CDA09_RS04770 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS04775 PF00171 Aldehyde dehydrogenase family CDA09_RS04785 PF00107 Zinc-binding dehydrogenase CDA09_RS04785 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_RS04790 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS04790 PF00072 Response regulator receiver domain CDA09_RS04805 PF00166 Chaperonin 10 Kd subunit CDA09_RS04810 PF00118 TCP-1/cpn60 chaperonin family CDA09_RS04815 PF00072 Response regulator receiver domain CDA09_RS04815 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS04820 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS04820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS04820 PF08521 Two-component sensor kinase N-terminal CDA09_RS04825 PF04341 Protein of unknown function, DUF485 CDA09_RS04830 PF00474 Sodium:solute symporter family CDA09_RS04855 PF05840 Bacteriophage replication gene A protein (GPA) CDA09_RS04900 PF01695 IstB-like ATP binding protein CDA09_RS04905 PF00665 Integrase core domain CDA09_RS04910 PF01548 Transposase CDA09_RS04910 PF02371 Transposase IS116/IS110/IS902 family CDA09_RS04920 PF00009 Elongation factor Tu GTP binding domain CDA09_RS04925 PF01507 Phosphoadenosine phosphosulfate reductase family CDA09_RS04930 PF01925 Sulfite exporter TauE/SafE CDA09_RS04935 PF01488 Shikimate / quinate 5-dehydrogenase CDA09_RS04935 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CDA09_RS04935 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CDA09_RS04940 PF00472 RF-1 domain CDA09_RS04940 PF03462 PCRF domain CDA09_RS04945 PF05175 Methyltransferase small domain CDA09_RS04945 PF17827 PrmC N-terminal domain CDA09_RS04950 PF00462 Glutaredoxin CDA09_RS04955 PF03793 PASTA domain CDA09_RS04955 PF00069 Protein kinase domain CDA09_RS04960 PF00206 Lyase CDA09_RS04960 PF14698 Argininosuccinate lyase C-terminal CDA09_RS04965 PF04397 LytTr DNA-binding domain CDA09_RS04965 PF00072 Response regulator receiver domain CDA09_RS04970 PF00311 Phosphoenolpyruvate carboxylase CDA09_RS04975 PF03900 Porphobilinogen deaminase, C-terminal domain CDA09_RS04975 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CDA09_RS04980 PF02602 Uroporphyrinogen-III synthase HemD CDA09_RS04985 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CDA09_RS04995 PF01218 Coproporphyrinogen III oxidase CDA09_RS05000 PF02844 Phosphoribosylglycinamide synthetase, N domain CDA09_RS05000 PF02843 Phosphoribosylglycinamide synthetase, C domain CDA09_RS05000 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CDA09_RS05005 PF02142 MGS-like domain CDA09_RS05005 PF01808 AICARFT/IMPCHase bienzyme CDA09_RS05010 PF02954 Bacterial regulatory protein, Fis family CDA09_RS05015 PF01207 Dihydrouridine synthase (Dus) CDA09_RS05020 PF01494 FAD binding domain CDA09_RS05025 PF05195 Aminopeptidase P, N-terminal domain CDA09_RS05025 PF00557 Metallopeptidase family M24 CDA09_RS05030 PF00483 Nucleotidyl transferase CDA09_RS05035 PF01636 Phosphotransferase enzyme family CDA09_RS05040 PF03968 OstA-like protein CDA09_RS05040 PF04453 LPS transport system D CDA09_RS05045 PF09312 SurA N-terminal domain CDA09_RS05045 PF00639 PPIC-type PPIASE domain CDA09_RS05050 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDA09_RS05055 PF00398 Ribosomal RNA adenine dimethylase CDA09_RS05065 PF00027 Cyclic nucleotide-binding domain CDA09_RS05065 PF13545 Crp-like helix-turn-helix domain CDA09_RS05085 PF00483 Nucleotidyl transferase CDA09_RS05095 PF01432 Peptidase family M3 CDA09_RS05105 PF01259 SAICAR synthetase CDA09_RS05115 PF13488 Glycine zipper CDA09_RS05115 PF00691 OmpA family CDA09_RS05120 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS05120 PF00563 EAL domain CDA09_RS05120 PF08448 PAS fold CDA09_RS05130 PF00072 Response regulator receiver domain CDA09_RS05130 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS05135 PF01116 Fructose-bisphosphate aldolase class-II CDA09_RS05140 PF00881 Nitroreductase family CDA09_RS05145 PF02887 Pyruvate kinase, alpha/beta domain CDA09_RS05145 PF00224 Pyruvate kinase, barrel domain CDA09_RS05160 PF00162 Phosphoglycerate kinase CDA09_RS05165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDA09_RS05165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDA09_RS05170 PF02780 Transketolase, C-terminal domain CDA09_RS05170 PF00456 Transketolase, thiamine diphosphate binding domain CDA09_RS05170 PF02779 Transketolase, pyrimidine binding domain CDA09_RS05175 PF00485 Phosphoribulokinase / Uridine kinase family CDA09_RS05180 PF00459 Inositol monophosphatase family CDA09_RS05185 PF04452 RNA methyltransferase CDA09_RS05190 PF03976 Polyphosphate kinase 2 (PPK2) CDA09_RS05195 PF00696 Amino acid kinase family CDA09_RS05195 PF00583 Acetyltransferase (GNAT) family CDA09_RS05200 PF13188 PAS domain CDA09_RS05200 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS05200 PF00563 EAL domain CDA09_RS05200 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS05205 PF04362 Bacterial Fe(2+) trafficking CDA09_RS05210 PF01895 PhoU domain CDA09_RS05215 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDA09_RS05220 PF03454 MoeA C-terminal region (domain IV) CDA09_RS05220 PF03453 MoeA N-terminal region (domain I and II) CDA09_RS05220 PF00994 Probable molybdopterin binding domain CDA09_RS05225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS05230 PF01926 50S ribosome-binding GTPase CDA09_RS05235 PF00490 Delta-aminolevulinic acid dehydratase CDA09_RS05245 PF08241 Methyltransferase domain CDA09_RS05250 PF06968 Biotin and Thiamin Synthesis associated domain CDA09_RS05250 PF04055 Radical SAM superfamily CDA09_RS05255 PF00156 Phosphoribosyl transferase domain CDA09_RS05260 PF00588 SpoU rRNA Methylase family CDA09_RS05265 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDA09_RS05265 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDA09_RS05275 PF02556 Preprotein translocase subunit SecB CDA09_RS05280 PF00462 Glutaredoxin CDA09_RS05285 PF00581 Rhodanese-like domain CDA09_RS05295 PF00300 Histidine phosphatase superfamily (branch 1) CDA09_RS05300 PF01551 Peptidase family M23 CDA09_RS05305 PF13180 PDZ domain CDA09_RS05305 PF03572 Peptidase family S41 CDA09_RS05310 PF00899 ThiF family CDA09_RS05315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDA09_RS05315 PF01872 RibD C-terminal domain CDA09_RS05320 PF03477 ATP cone domain CDA09_RS05325 PF00464 Serine hydroxymethyltransferase CDA09_RS05330 PF00300 Histidine phosphatase superfamily (branch 1) CDA09_RS05335 PF01523 Putative modulator of DNA gyrase CDA09_RS05340 PF04751 Protein of unknown function (DUF615) CDA09_RS05345 PF00994 Probable molybdopterin binding domain CDA09_RS05350 PF01794 Ferric reductase like transmembrane component CDA09_RS05355 PF00174 Oxidoreductase molybdopterin binding domain CDA09_RS05365 PF04542 Sigma-70 region 2 CDA09_RS05365 PF08281 Sigma-70, region 4 CDA09_RS05370 PF00793 DAHP synthetase I family CDA09_RS05375 PF01923 Cobalamin adenosyltransferase CDA09_RS05380 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDA09_RS05380 PF02272 DHHA1 domain CDA09_RS05380 PF01411 tRNA synthetases class II (A) CDA09_RS05390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDA09_RS05390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDA09_RS05390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDA09_RS05390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDA09_RS05405 PF01063 Amino-transferase class IV CDA09_RS05415 PF00293 NUDIX domain CDA09_RS05445 PF03710 Glutamate-ammonia ligase adenylyltransferase CDA09_RS05445 PF08335 GlnD PII-uridylyltransferase CDA09_RS05455 PF00795 Carbon-nitrogen hydrolase CDA09_RS05460 PF01523 Putative modulator of DNA gyrase CDA09_RS05470 PF00158 Sigma-54 interaction domain CDA09_RS05470 PF00072 Response regulator receiver domain CDA09_RS05480 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS05480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS05495 PF01464 Transglycosylase SLT domain CDA09_RS05495 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CDA09_RS05500 PF03129 Anticodon binding domain CDA09_RS05500 PF04073 Aminoacyl-tRNA editing domain CDA09_RS05500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDA09_RS05505 PF00293 NUDIX domain CDA09_RS05515 PF02915 Rubrerythrin CDA09_RS05520 PF13183 4Fe-4S dicluster domain CDA09_RS05520 PF02754 Cysteine-rich domain CDA09_RS05535 PF03232 Ubiquinone biosynthesis protein COQ7 CDA09_RS05540 PF02566 OsmC-like protein CDA09_RS05545 PF01212 Beta-eliminating lyase CDA09_RS05550 PF00572 Ribosomal protein L13 CDA09_RS05555 PF00380 Ribosomal protein S9/S16 CDA09_RS05560 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDA09_RS05560 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_RS05565 PF01521 Iron-sulphur cluster biosynthesis CDA09_RS05570 PF01610 Transposase CDA09_RS05570 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CDA09_RS05570 PF13542 Helix-turn-helix domain of transposase family ISL3 CDA09_RS05575 PF01551 Peptidase family M23 CDA09_RS05580 PF00579 tRNA synthetases class I (W and Y) CDA09_RS05580 PF01479 S4 domain CDA09_RS05585 PF00563 EAL domain CDA09_RS05585 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS05585 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS05630 PF02423 Ornithine cyclodeaminase/mu-crystallin family CDA09_RS05635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS05635 PF03466 LysR substrate binding domain CDA09_RS05650 PF12833 Helix-turn-helix domain CDA09_RS05650 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDA09_RS05655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS05655 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS05655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS05660 PF01039 Carboxyl transferase domain CDA09_RS05665 PF02785 Biotin carboxylase C-terminal domain CDA09_RS05665 PF00289 Biotin carboxylase, N-terminal domain CDA09_RS05665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDA09_RS05665 PF00364 Biotin-requiring enzyme CDA09_RS05670 PF00501 AMP-binding enzyme CDA09_RS05670 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS05680 PF00501 AMP-binding enzyme CDA09_RS05680 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS05685 PF01979 Amidohydrolase family CDA09_RS05695 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS05695 PF00072 Response regulator receiver domain CDA09_RS05700 PF05247 Flagellar transcriptional activator (FlhD) CDA09_RS05705 PF05280 Flagellar transcriptional activator (FlhC) CDA09_RS05710 PF01618 MotA/TolQ/ExbB proton channel family CDA09_RS05715 PF13677 Membrane MotB of proton-channel complex MotA/MotB CDA09_RS05715 PF00691 OmpA family CDA09_RS05720 PF03705 CheR methyltransferase, all-alpha domain CDA09_RS05720 PF01739 CheR methyltransferase, SAM binding domain CDA09_RS05725 PF00072 Response regulator receiver domain CDA09_RS05725 PF01339 CheB methylesterase CDA09_RS05730 PF00072 Response regulator receiver domain CDA09_RS05730 PF01584 CheW-like domain CDA09_RS05735 PF01584 CheW-like domain CDA09_RS05735 PF00072 Response regulator receiver domain CDA09_RS05740 PF00072 Response regulator receiver domain CDA09_RS05745 PF04344 Chemotaxis phosphatase, CheZ CDA09_RS05750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS05750 PF02895 Signal transducing histidine kinase, homodimeric domain CDA09_RS05750 PF01627 Hpt domain CDA09_RS05750 PF01584 CheW-like domain CDA09_RS05750 PF00072 Response regulator receiver domain CDA09_RS05755 PF00923 Transaldolase/Fructose-6-phosphate aldolase CDA09_RS05760 PF00849 RNA pseudouridylate synthase CDA09_RS05765 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_RS05770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS05770 PF03466 LysR substrate binding domain CDA09_RS05775 PF00005 ABC transporter CDA09_RS05775 PF12857 TOBE-like domain CDA09_RS05780 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS05785 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS05820 PF00884 Sulfatase CDA09_RS05840 PF00158 Sigma-54 interaction domain CDA09_RS05845 PF03459 TOBE domain CDA09_RS05855 PF00005 ABC transporter CDA09_RS05860 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS05865 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS05870 PF09084 NMT1/THI5 like CDA09_RS05880 PF00884 Sulfatase CDA09_RS05890 PF07690 Major Facilitator Superfamily CDA09_RS05895 PF13533 Biotin-lipoyl like CDA09_RS05900 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS05900 PF00501 AMP-binding enzyme CDA09_RS05910 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS05915 PF00005 ABC transporter CDA09_RS05935 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDA09_RS05935 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDA09_RS05940 PF13742 OB-fold nucleic acid binding domain CDA09_RS05940 PF02601 Exonuclease VII, large subunit CDA09_RS05945 PF01618 MotA/TolQ/ExbB proton channel family CDA09_RS05950 PF02472 Biopolymer transport protein ExbD/TolR CDA09_RS05955 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CDA09_RS05960 PF03966 Trm112p-like protein CDA09_RS05965 PF02348 Cytidylyltransferase CDA09_RS05970 PF05191 Adenylate kinase, active site lid CDA09_RS05975 PF00365 Phosphofructokinase CDA09_RS05990 PF03023 Lipid II flippase MurJ CDA09_RS05995 PF01649 Ribosomal protein S20 CDA09_RS06005 PF00202 Aminotransferase class-III CDA09_RS06010 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDA09_RS06010 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDA09_RS06015 PF00764 Arginosuccinate synthase CDA09_RS06025 PF06865 Pyrimidine/purine nucleoside phosphorylase CDA09_RS06030 PF04461 Protein of unknown function (DUF520) CDA09_RS06035 PF02405 Permease MlaE CDA09_RS06040 PF00005 ABC transporter CDA09_RS06060 PF01245 Ribosomal protein L19 CDA09_RS06065 PF01746 tRNA (Guanine-1)-methyltransferase CDA09_RS06070 PF05239 PRC-barrel domain CDA09_RS06070 PF01782 RimM N-terminal domain CDA09_RS06075 PF00886 Ribosomal protein S16 CDA09_RS06085 PF03631 Virulence factor BrkB CDA09_RS06090 PF03358 NADPH-dependent FMN reductase CDA09_RS06100 PF08502 LeuA allosteric (dimerisation) domain CDA09_RS06100 PF00682 HMGL-like CDA09_RS06115 PF09086 Domain of unknown function (DUF1924) CDA09_RS06125 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS06125 PF00072 Response regulator receiver domain CDA09_RS06130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS06135 PF01066 CDP-alcohol phosphatidyltransferase CDA09_RS06140 PF02666 Phosphatidylserine decarboxylase CDA09_RS06145 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CDA09_RS06145 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CDA09_RS06150 PF10369 Small subunit of acetolactate synthase CDA09_RS06155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_RS06155 PF00205 Thiamine pyrophosphate enzyme, central domain CDA09_RS06155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDA09_RS06180 PF11940 Domain of unknown function (DUF3458) Ig-like fold CDA09_RS06180 PF01433 Peptidase family M1 domain CDA09_RS06180 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CDA09_RS06190 PF02569 Pantoate-beta-alanine ligase CDA09_RS06195 PF02548 Ketopantoate hydroxymethyltransferase CDA09_RS06200 PF01712 Deoxynucleoside kinase CDA09_RS06210 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDA09_RS06215 PF01743 Poly A polymerase head domain CDA09_RS06215 PF12626 Polymerase A arginine-rich C-terminus CDA09_RS06215 PF12627 Probable RNA and SrmB- binding site of polymerase A CDA09_RS06225 PF08299 Bacterial dnaA protein helix-turn-helix CDA09_RS06225 PF00308 Bacterial dnaA protein CDA09_RS06230 PF01594 AI-2E family transporter CDA09_RS06235 PF00586 AIR synthase related protein, N-terminal domain CDA09_RS06235 PF02769 AIR synthase related protein, C-terminal domain CDA09_RS06240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_RS06240 PF00529 HlyD membrane-fusion protein of T1SS CDA09_RS06245 PF00873 AcrB/AcrD/AcrF family CDA09_RS06270 PF04055 Radical SAM superfamily CDA09_RS06280 PF13180 PDZ domain CDA09_RS06285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS06285 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS06285 PF08521 Two-component sensor kinase N-terminal CDA09_RS06290 PF00072 Response regulator receiver domain CDA09_RS06290 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS06310 PF00072 Response regulator receiver domain CDA09_RS06310 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS06315 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS06315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS06315 PF00672 HAMP domain CDA09_RS06320 PF04286 Protein of unknown function (DUF445) CDA09_RS06345 PF00245 Alkaline phosphatase CDA09_RS06355 PF03358 NADPH-dependent FMN reductase CDA09_RS06360 PF00909 Ammonium Transporter Family CDA09_RS06365 PF00892 EamA-like transporter family CDA09_RS06370 PF07722 Peptidase C26 CDA09_RS06375 PF04107 Glutamate-cysteine ligase family 2(GCS2) CDA09_RS06385 PF04355 SmpA / OmlA family CDA09_RS06390 PF13439 Glycosyltransferase Family 4 CDA09_RS06390 PF00534 Glycosyl transferases group 1 CDA09_RS06405 PF00361 Proton-conducting membrane transporter CDA09_RS06410 PF00146 NADH dehydrogenase CDA09_RS06420 PF00361 Proton-conducting membrane transporter CDA09_RS06425 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDA09_RS06430 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDA09_RS06435 PF07681 DoxX CDA09_RS06440 PF00224 Pyruvate kinase, barrel domain CDA09_RS06440 PF02887 Pyruvate kinase, alpha/beta domain CDA09_RS06445 PF03928 Haem-degrading CDA09_RS06450 PF13660 Domain of unknown function (DUF4147) CDA09_RS06450 PF05161 MOFRL family CDA09_RS06455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDA09_RS06455 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDA09_RS06460 PF01261 Xylose isomerase-like TIM barrel CDA09_RS06465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_RS06465 PF00205 Thiamine pyrophosphate enzyme, central domain CDA09_RS06465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDA09_RS06490 PF07730 Histidine kinase CDA09_RS06490 PF17200 Single Cache domain 2 CDA09_RS06495 PF01339 CheB methylesterase CDA09_RS06495 PF00072 Response regulator receiver domain CDA09_RS06500 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS06500 PF00072 Response regulator receiver domain CDA09_RS06505 PF01037 Lrp/AsnC ligand binding domain CDA09_RS06510 PF00682 HMGL-like CDA09_RS06510 PF08502 LeuA allosteric (dimerisation) domain CDA09_RS06515 PF00589 Phage integrase family CDA09_RS06515 PF13495 Phage integrase, N-terminal SAM-like domain CDA09_RS06520 PF00589 Phage integrase family CDA09_RS06520 PF13495 Phage integrase, N-terminal SAM-like domain CDA09_RS06525 PF04986 Putative transposase CDA09_RS06525 PF14319 Transposase zinc-binding domain CDA09_RS06535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS06535 PF03466 LysR substrate binding domain CDA09_RS06545 PF01471 Putative peptidoglycan binding domain CDA09_RS06545 PF13401 AAA domain CDA09_RS06575 PF00664 ABC transporter transmembrane region CDA09_RS06575 PF00005 ABC transporter CDA09_RS06580 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDA09_RS06585 PF00710 Asparaginase, N-terminal CDA09_RS06585 PF17763 Glutaminase/Asparaginase C-terminal domain CDA09_RS06590 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS06595 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS06600 PF00005 ABC transporter CDA09_RS06605 PF00158 Sigma-54 interaction domain CDA09_RS06605 PF00072 Response regulator receiver domain CDA09_RS06605 PF02954 Bacterial regulatory protein, Fis family CDA09_RS06610 PF00171 Aldehyde dehydrogenase family CDA09_RS06625 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS06625 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS06625 PF00563 EAL domain CDA09_RS06715 PF00460 Flagella basal body rod protein CDA09_RS06720 PF00460 Flagella basal body rod protein CDA09_RS06720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDA09_RS06725 PF13861 FlgD Tudor-like domain CDA09_RS06725 PF13860 FlgD Ig-like domain CDA09_RS06725 PF03963 Flagellar hook capping protein - N-terminal region CDA09_RS06730 PF07559 Flagellar basal body protein FlaE CDA09_RS06730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDA09_RS06730 PF00460 Flagella basal body rod protein CDA09_RS06735 PF00460 Flagella basal body rod protein CDA09_RS06735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDA09_RS06740 PF00460 Flagella basal body rod protein CDA09_RS06740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDA09_RS06745 PF02107 Flagellar L-ring protein CDA09_RS06750 PF02119 Flagellar P-ring protein CDA09_RS06760 PF00460 Flagella basal body rod protein CDA09_RS06760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDA09_RS06765 PF00669 Bacterial flagellin N-terminal helical region CDA09_RS06775 PF01311 Bacterial export proteins, family 1 CDA09_RS06780 PF01313 Bacterial export proteins, family 3 CDA09_RS06785 PF00813 FliP family CDA09_RS06790 PF04347 Flagellar biosynthesis protein, FliO CDA09_RS06795 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CDA09_RS06800 PF02154 Flagellar motor switch protein FliM CDA09_RS06800 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CDA09_RS06820 PF18269 T3SS EscN ATPase C-terminal domain CDA09_RS06820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDA09_RS06830 PF01706 FliG C-terminal domain CDA09_RS06830 PF14842 FliG N-terminal domain CDA09_RS06830 PF14841 FliG middle domain CDA09_RS06835 PF08345 Flagellar M-ring protein C-terminal CDA09_RS06835 PF01514 Secretory protein of YscJ/FliF family CDA09_RS06840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS06840 PF13188 PAS domain CDA09_RS06840 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS06845 PF00158 Sigma-54 interaction domain CDA09_RS06845 PF00072 Response regulator receiver domain CDA09_RS06845 PF02954 Bacterial regulatory protein, Fis family CDA09_RS06850 PF02049 Flagellar hook-basal body complex protein FliE CDA09_RS06855 PF00072 Response regulator receiver domain CDA09_RS06855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS06855 PF01627 Hpt domain CDA09_RS06855 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS06860 PF07317 Flagellar regulator YcgR CDA09_RS06860 PF07238 PilZ domain CDA09_RS06865 PF01312 FlhB HrpN YscU SpaS Family CDA09_RS06880 PF02561 Flagellar protein FliS CDA09_RS06885 PF02465 Flagellar hook-associated protein 2 N-terminus CDA09_RS06885 PF07195 Flagellar hook-associated protein 2 C-terminus CDA09_RS06890 PF03646 FlaG protein CDA09_RS06895 PF00669 Bacterial flagellin N-terminal helical region CDA09_RS06895 PF00700 Bacterial flagellin C-terminal helical region CDA09_RS06900 PF00072 Response regulator receiver domain CDA09_RS06900 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS06905 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS06905 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDA09_RS06910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDA09_RS06910 PF00364 Biotin-requiring enzyme CDA09_RS06910 PF02817 e3 binding domain CDA09_RS06915 PF00456 Transketolase, thiamine diphosphate binding domain CDA09_RS06915 PF17831 Pyruvate dehydrogenase E1 component middle domain CDA09_RS06925 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS06925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS06925 PF00989 PAS fold CDA09_RS06930 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS06930 PF00072 Response regulator receiver domain CDA09_RS06950 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDA09_RS06950 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDA09_RS06955 PF00731 AIR carboxylase CDA09_RS06960 PF02222 ATP-grasp domain CDA09_RS06960 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CDA09_RS06965 PF01300 Telomere recombination CDA09_RS06965 PF03481 Putative GTP-binding controlling metal-binding CDA09_RS07030 PF01883 Iron-sulfur cluster assembly protein CDA09_RS07040 PF03350 Uncharacterized protein family, UPF0114 CDA09_RS07045 PF08335 GlnD PII-uridylyltransferase CDA09_RS07045 PF01966 HD domain CDA09_RS07050 PF00557 Metallopeptidase family M24 CDA09_RS07055 PF00318 Ribosomal protein S2 CDA09_RS07060 PF00889 Elongation factor TS CDA09_RS07065 PF00696 Amino acid kinase family CDA09_RS07070 PF01765 Ribosome recycling factor CDA09_RS07075 PF01255 Putative undecaprenyl diphosphate synthase CDA09_RS07085 PF13288 DXP reductoisomerase C-terminal domain CDA09_RS07085 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CDA09_RS07085 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CDA09_RS07090 PF13180 PDZ domain CDA09_RS07090 PF17820 PDZ domain CDA09_RS07090 PF02163 Peptidase family M50 CDA09_RS07095 PF01103 Surface antigen CDA09_RS07095 PF07244 Surface antigen variable number repeat CDA09_RS07105 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CDA09_RS07105 PF14602 Hexapeptide repeat of succinyl-transferase CDA09_RS07105 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_RS07110 PF07977 FabA-like domain CDA09_RS07115 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_RS07115 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CDA09_RS07120 PF02684 Lipid-A-disaccharide synthetase CDA09_RS07125 PF01351 Ribonuclease HII CDA09_RS07135 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDA09_RS07135 PF00588 SpoU rRNA Methylase family CDA09_RS07145 PF08241 Methyltransferase domain CDA09_RS07150 PF12697 Alpha/beta hydrolase family CDA09_RS07155 PF00155 Aminotransferase class I and II CDA09_RS07160 PF00202 Aminotransferase class-III CDA09_RS07165 PF03883 Peroxide stress protein YaaA CDA09_RS07170 PF00246 Zinc carboxypeptidase CDA09_RS07170 PF18027 Cytosolic carboxypeptidase N-terminal domain CDA09_RS07180 PF00793 DAHP synthetase I family CDA09_RS07185 PF18113 Rubredoxin binding C-terminal domain CDA09_RS07185 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS07190 PF00301 Rubredoxin CDA09_RS07215 PF05573 NosL CDA09_RS07220 PF12679 ABC-2 family transporter protein CDA09_RS07225 PF00005 ABC transporter CDA09_RS07240 PF12801 4Fe-4S binding domain CDA09_RS07240 PF04205 FMN-binding domain CDA09_RS07245 PF13473 Cupredoxin-like domain CDA09_RS07245 PF18764 Nitrous oxide reductase propeller repeat CDA09_RS07245 PF18793 Nitrous oxide reductase propeller repeat 2 CDA09_RS07255 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS07255 PF00072 Response regulator receiver domain CDA09_RS07260 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDA09_RS07260 PF07730 Histidine kinase CDA09_RS07260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07260 PF00672 HAMP domain CDA09_RS07265 PF02665 Nitrate reductase gamma subunit CDA09_RS07270 PF02613 Nitrate reductase delta subunit CDA09_RS07275 PF13247 4Fe-4S dicluster domain CDA09_RS07275 PF14711 Respiratory nitrate reductase beta C-terminal CDA09_RS07280 PF14710 Respiratory nitrate reductase alpha N-terminal CDA09_RS07280 PF01568 Molydopterin dinucleotide binding domain CDA09_RS07280 PF00384 Molybdopterin oxidoreductase CDA09_RS07285 PF07690 Major Facilitator Superfamily CDA09_RS07290 PF07690 Major Facilitator Superfamily CDA09_RS07295 PF12902 Ferritin-like CDA09_RS07320 PF01329 Pterin 4 alpha carbinolamine dehydratase CDA09_RS07325 PF01053 Cys/Met metabolism PLP-dependent enzyme CDA09_RS07335 PF04715 Anthranilate synthase component I, N terminal region CDA09_RS07335 PF00425 chorismate binding enzyme CDA09_RS07340 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS07345 PF14579 Helix-hairpin-helix motif CDA09_RS07345 PF02811 PHP domain CDA09_RS07345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDA09_RS07345 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDA09_RS07350 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CDA09_RS07360 PF01554 MatE CDA09_RS07390 PF00158 Sigma-54 interaction domain CDA09_RS07390 PF02954 Bacterial regulatory protein, Fis family CDA09_RS07390 PF06505 Activator of aromatic catabolism CDA09_RS07390 PF02830 V4R domain CDA09_RS07395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07395 PF13188 PAS domain CDA09_RS07395 PF13426 PAS domain CDA09_RS07400 PF00072 Response regulator receiver domain CDA09_RS07400 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS07405 PF14870 Photosynthesis system II assembly factor YCF48 CDA09_RS07430 PF02801 Beta-ketoacyl synthase, C-terminal domain CDA09_RS07430 PF00698 Acyl transferase domain CDA09_RS07430 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_RS07430 PF00107 Zinc-binding dehydrogenase CDA09_RS07430 PF00550 Phosphopantetheine attachment site CDA09_RS07430 PF08659 KR domain CDA09_RS07430 PF16197 Ketoacyl-synthetase C-terminal extension CDA09_RS07430 PF00109 Beta-ketoacyl synthase, N-terminal domain CDA09_RS07430 PF14765 Polyketide synthase dehydratase CDA09_RS07435 PF00106 short chain dehydrogenase CDA09_RS07445 PF02515 CoA-transferase family III CDA09_RS07450 PF02515 CoA-transferase family III CDA09_RS07460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS07460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS07460 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS07465 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS07470 PF01161 Phosphatidylethanolamine-binding protein CDA09_RS07480 PF11339 Protein of unknown function (DUF3141) CDA09_RS07490 PF07969 Amidohydrolase family CDA09_RS07530 PF07728 AAA domain (dynein-related subfamily) CDA09_RS07530 PF08406 CbbQ/NirQ/NorQ C-terminal CDA09_RS07535 PF18512 Benzylsuccinate synthase beta subunit CDA09_RS07540 PF02901 Pyruvate formate lyase-like CDA09_RS07540 PF01228 Glycine radical CDA09_RS07545 PF08201 BssC/TutF protein CDA09_RS07550 PF04055 Radical SAM superfamily CDA09_RS07555 PF13188 PAS domain CDA09_RS07555 PF13426 PAS domain CDA09_RS07555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07570 PF09828 Chromate resistance exported protein CDA09_RS07585 PF09828 Chromate resistance exported protein CDA09_RS07600 PF00375 Sodium:dicarboxylate symporter family CDA09_RS07605 PF01925 Sulfite exporter TauE/SafE CDA09_RS07610 PF02743 Cache domain CDA09_RS07610 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS07610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07635 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS07635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07640 PF00072 Response regulator receiver domain CDA09_RS07645 PF13492 GAF domain CDA09_RS07645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07645 PF07730 Histidine kinase CDA09_RS07650 PF00072 Response regulator receiver domain CDA09_RS07650 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS07660 PF00501 AMP-binding enzyme CDA09_RS07670 PF00072 Response regulator receiver domain CDA09_RS07675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07675 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS07675 PF02743 Cache domain CDA09_RS07680 PF00072 Response regulator receiver domain CDA09_RS07685 PF02954 Bacterial regulatory protein, Fis family CDA09_RS07685 PF00072 Response regulator receiver domain CDA09_RS07685 PF00158 Sigma-54 interaction domain CDA09_RS07690 PF00025 ADP-ribosylation factor family CDA09_RS07695 PF02743 Cache domain CDA09_RS07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07695 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS07700 PF00437 Type II/IV secretion system protein CDA09_RS07700 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDA09_RS07705 PF00072 Response regulator receiver domain CDA09_RS07705 PF13188 PAS domain CDA09_RS07705 PF08448 PAS fold CDA09_RS07705 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS07705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07710 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS07710 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS07710 PF00563 EAL domain CDA09_RS07715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07715 PF08448 PAS fold CDA09_RS07715 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS07715 PF13426 PAS domain CDA09_RS07715 PF00072 Response regulator receiver domain CDA09_RS07720 PF00072 Response regulator receiver domain CDA09_RS07720 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS07725 PF00011 Hsp20/alpha crystallin family CDA09_RS07730 PF00011 Hsp20/alpha crystallin family CDA09_RS07735 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS07735 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS07735 PF00563 EAL domain CDA09_RS07745 PF07715 TonB-dependent Receptor Plug Domain CDA09_RS07745 PF00593 TonB dependent receptor CDA09_RS07760 PF00248 Aldo/keto reductase family CDA09_RS07765 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDA09_RS07765 PF00056 lactate/malate dehydrogenase, NAD binding domain CDA09_RS07775 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS07775 PF00563 EAL domain CDA09_RS07775 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS07780 PF01844 HNH endonuclease CDA09_RS07785 PF00255 Glutathione peroxidase CDA09_RS07790 PF02798 Glutathione S-transferase, N-terminal domain CDA09_RS07790 PF00043 Glutathione S-transferase, C-terminal domain CDA09_RS07800 PF00072 Response regulator receiver domain CDA09_RS07800 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS07805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07805 PF05231 MASE1 CDA09_RS07805 PF07730 Histidine kinase CDA09_RS07820 PF01011 PQQ enzyme repeat CDA09_RS07820 PF13360 PQQ-like domain CDA09_RS07840 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDA09_RS07845 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS07850 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS07855 PF00005 ABC transporter CDA09_RS07870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS07870 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS07870 PF00989 PAS fold CDA09_RS07880 PF02705 K+ potassium transporter CDA09_RS07895 PF02630 SCO1/SenC CDA09_RS07900 PF00491 Arginase family CDA09_RS07910 PF00158 Sigma-54 interaction domain CDA09_RS07910 PF02954 Bacterial regulatory protein, Fis family CDA09_RS07910 PF01590 GAF domain CDA09_RS07915 PF00171 Aldehyde dehydrogenase family CDA09_RS07935 PF00005 ABC transporter CDA09_RS07940 PF00005 ABC transporter CDA09_RS07975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS07980 PF01590 GAF domain CDA09_RS07980 PF02954 Bacterial regulatory protein, Fis family CDA09_RS07980 PF00158 Sigma-54 interaction domain CDA09_RS07990 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain CDA09_RS07990 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CDA09_RS07995 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDA09_RS07995 PF18267 Rubredoxin NAD+ reductase C-terminal domain CDA09_RS07995 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS07995 PF04324 BFD-like [2Fe-2S] binding domain CDA09_RS08010 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS08015 PF00005 ABC transporter CDA09_RS08020 PF03466 LysR substrate binding domain CDA09_RS08020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS08025 PF05368 NmrA-like family CDA09_RS08030 PF01292 Prokaryotic cytochrome b561 CDA09_RS08035 PF04264 YceI-like domain CDA09_RS08095 PF00589 Phage integrase family CDA09_RS08100 PF01967 MoaC family CDA09_RS08105 PF01435 Peptidase family M48 CDA09_RS08110 PF01206 Sulfurtransferase TusA CDA09_RS08115 PF10458 Valyl tRNA synthetase tRNA binding arm CDA09_RS08115 PF00133 tRNA synthetases class I (I, L, M and V) CDA09_RS08115 PF08264 Anticodon-binding domain of tRNA CDA09_RS08130 PF02789 Cytosol aminopeptidase family, N-terminal domain CDA09_RS08130 PF00883 Cytosol aminopeptidase family, catalytic domain CDA09_RS08135 PF03739 Lipopolysaccharide export system permease LptF/LptG CDA09_RS08145 PF00175 Oxidoreductase NAD-binding domain CDA09_RS08145 PF00970 Oxidoreductase FAD-binding domain CDA09_RS08155 PF02082 Transcriptional regulator CDA09_RS08165 PF07690 Major Facilitator Superfamily CDA09_RS08170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS08170 PF03466 LysR substrate binding domain CDA09_RS08175 PF00849 RNA pseudouridylate synthase CDA09_RS08180 PF04945 YHS domain CDA09_RS08200 PF11525 Copper resistance protein K CDA09_RS08220 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDA09_RS08230 PF13614 AAA domain CDA09_RS08235 PF01548 Transposase CDA09_RS08235 PF02371 Transposase IS116/IS110/IS902 family CDA09_RS08240 PF03976 Polyphosphate kinase 2 (PPK2) CDA09_RS08270 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS08270 PF00155 Aminotransferase class I and II CDA09_RS08280 PF00682 HMGL-like CDA09_RS08285 PF03206 Nitrogen fixation protein NifW CDA09_RS08290 PF00037 4Fe-4S binding domain CDA09_RS08295 PF01012 Electron transfer flavoprotein domain CDA09_RS08300 PF01012 Electron transfer flavoprotein domain CDA09_RS08300 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_RS08305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS08315 PF02954 Bacterial regulatory protein, Fis family CDA09_RS08315 PF01590 GAF domain CDA09_RS08315 PF00158 Sigma-54 interaction domain CDA09_RS08330 PF02579 Dinitrogenase iron-molybdenum cofactor CDA09_RS08330 PF04055 Radical SAM superfamily CDA09_RS08335 PF04319 NifZ domain CDA09_RS08340 PF06988 NifT/FixU protein CDA09_RS08345 PF03747 ADP-ribosylglycohydrolase CDA09_RS08350 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CDA09_RS08355 PF00148 Nitrogenase component 1 type Oxidoreductase CDA09_RS08360 PF00148 Nitrogenase component 1 type Oxidoreductase CDA09_RS08360 PF11844 Domain of unknown function (DUF3364) CDA09_RS08365 PF04324 BFD-like [2Fe-2S] binding domain CDA09_RS08365 PF00148 Nitrogenase component 1 type Oxidoreductase CDA09_RS08370 PF00148 Nitrogenase component 1 type Oxidoreductase CDA09_RS08375 PF02579 Dinitrogenase iron-molybdenum cofactor CDA09_RS08380 PF03270 Protein of unknown function, DUF269 CDA09_RS08385 PF05082 Rop-like CDA09_RS08390 PF12838 4Fe-4S dicluster domain CDA09_RS08395 PF04891 NifQ CDA09_RS08415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS08415 PF03466 LysR substrate binding domain CDA09_RS08420 PF03631 Virulence factor BrkB CDA09_RS08425 PF17868 AAA lid domain CDA09_RS08425 PF12592 Protein of unknown function (DUF3763) CDA09_RS08425 PF07728 AAA domain (dynein-related subfamily) CDA09_RS08430 PF05762 VWA domain containing CoxE-like protein CDA09_RS08440 PF03466 LysR substrate binding domain CDA09_RS08440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS08445 PF07883 Cupin domain CDA09_RS08450 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_RS08455 PF01494 FAD binding domain CDA09_RS08460 PF13417 Glutathione S-transferase, N-terminal domain CDA09_RS08465 PF13458 Periplasmic binding protein CDA09_RS08475 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS08480 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS08480 PF00005 ABC transporter CDA09_RS08485 PF00005 ABC transporter CDA09_RS08510 PF01965 DJ-1/PfpI family CDA09_RS08510 PF12833 Helix-turn-helix domain CDA09_RS08520 PF02633 Creatinine amidohydrolase CDA09_RS08530 PF03502 Nucleoside-specific channel-forming protein, Tsx CDA09_RS08540 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS08550 PF00005 ABC transporter CDA09_RS08550 PF08402 TOBE domain CDA09_RS08555 PF00557 Metallopeptidase family M24 CDA09_RS08555 PF01321 Creatinase/Prolidase N-terminal domain CDA09_RS08565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS08565 PF03466 LysR substrate binding domain CDA09_RS08570 PF00857 Isochorismatase family CDA09_RS08575 PF01968 Hydantoinase/oxoprolinase CDA09_RS08575 PF05378 Hydantoinase/oxoprolinase N-terminal region CDA09_RS08580 PF02538 Hydantoinase B/oxoprolinase CDA09_RS08585 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CDA09_RS08595 PF00857 Isochorismatase family CDA09_RS08600 PF07690 Major Facilitator Superfamily CDA09_RS08605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS08605 PF03466 LysR substrate binding domain CDA09_RS08610 PF00109 Beta-ketoacyl synthase, N-terminal domain CDA09_RS08610 PF02801 Beta-ketoacyl synthase, C-terminal domain CDA09_RS08625 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CDA09_RS08625 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CDA09_RS08625 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CDA09_RS08630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_RS08635 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_RS08640 PF01177 Asp/Glu/Hydantoin racemase CDA09_RS08650 PF07690 Major Facilitator Superfamily CDA09_RS08665 PF01979 Amidohydrolase family CDA09_RS08670 PF01070 FMN-dependent dehydrogenase CDA09_RS08680 PF03880 DbpA RNA binding domain CDA09_RS08680 PF00270 DEAD/DEAH box helicase CDA09_RS08680 PF00271 Helicase conserved C-terminal domain CDA09_RS08685 PF01863 Protein of unknown function DUF45 CDA09_RS08690 PF00342 Phosphoglucose isomerase CDA09_RS08695 PF00561 alpha/beta hydrolase fold CDA09_RS08700 PF11525 Copper resistance protein K CDA09_RS08715 PF08042 PqqA family CDA09_RS08720 PF12706 Beta-lactamase superfamily domain CDA09_RS08725 PF03070 TENA/THI-4/PQQC family CDA09_RS08730 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CDA09_RS08735 PF04055 Radical SAM superfamily CDA09_RS08735 PF13186 Iron-sulfur cluster-binding domain CDA09_RS08745 PF13409 Glutathione S-transferase, N-terminal domain CDA09_RS08750 PF07681 DoxX CDA09_RS08755 PF02230 Phospholipase/Carboxylesterase CDA09_RS08765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS08765 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS08765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS08770 PF00108 Thiolase, N-terminal domain CDA09_RS08770 PF02803 Thiolase, C-terminal domain CDA09_RS08775 PF00501 AMP-binding enzyme CDA09_RS08775 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS08785 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS08800 PF01494 FAD binding domain CDA09_RS08820 PF00501 AMP-binding enzyme CDA09_RS08820 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS08825 PF02685 Glucokinase CDA09_RS08835 PF00072 Response regulator receiver domain CDA09_RS08840 PF00027 Cyclic nucleotide-binding domain CDA09_RS08840 PF13545 Crp-like helix-turn-helix domain CDA09_RS08860 PF07728 AAA domain (dynein-related subfamily) CDA09_RS08860 PF08406 CbbQ/NirQ/NorQ C-terminal CDA09_RS08870 PF00510 Cytochrome c oxidase subunit III CDA09_RS08875 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDA09_RS08880 PF00034 Cytochrome c CDA09_RS08910 PF16177 Acetyl-coenzyme A synthetase N-terminus CDA09_RS08910 PF00501 AMP-binding enzyme CDA09_RS08910 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS08920 PF18698 Histidine kinase sensor domain CDA09_RS08920 PF00672 HAMP domain CDA09_RS08920 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS08920 PF00989 PAS fold CDA09_RS08920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS08925 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS08925 PF00072 Response regulator receiver domain CDA09_RS08930 PF00929 Exonuclease CDA09_RS08935 PF00474 Sodium:solute symporter family CDA09_RS08980 PF13247 4Fe-4S dicluster domain CDA09_RS08985 PF01568 Molydopterin dinucleotide binding domain CDA09_RS08985 PF00384 Molybdopterin oxidoreductase CDA09_RS09005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09005 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS09025 PF07690 Major Facilitator Superfamily CDA09_RS09050 PF02515 CoA-transferase family III CDA09_RS09070 PF07044 Protein of unknown function (DUF1329) CDA09_RS09085 PF13350 Tyrosine phosphatase family CDA09_RS09095 PF00171 Aldehyde dehydrogenase family CDA09_RS09100 PF00107 Zinc-binding dehydrogenase CDA09_RS09100 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_RS09105 PF00582 Universal stress protein family CDA09_RS09115 PF00067 Cytochrome P450 CDA09_RS09120 PF00175 Oxidoreductase NAD-binding domain CDA09_RS09120 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS09125 PF01012 Electron transfer flavoprotein domain CDA09_RS09130 PF01012 Electron transfer flavoprotein domain CDA09_RS09130 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_RS09135 PF01575 MaoC like domain CDA09_RS09145 PF00501 AMP-binding enzyme CDA09_RS09145 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS09150 PF02515 CoA-transferase family III CDA09_RS09160 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS09165 PF02515 CoA-transferase family III CDA09_RS09170 PF01144 Coenzyme A transferase CDA09_RS09175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09175 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS09175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09180 PF01144 Coenzyme A transferase CDA09_RS09185 PF00501 AMP-binding enzyme CDA09_RS09185 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS09190 PF07729 FCD domain CDA09_RS09190 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS09195 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS09195 PF00501 AMP-binding enzyme CDA09_RS09200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09200 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS09205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09205 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS09205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09210 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS09215 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS09215 PF07729 FCD domain CDA09_RS09225 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_RS09230 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_RS09255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS09255 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS09260 PF00106 short chain dehydrogenase CDA09_RS09270 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS09270 PF00072 Response regulator receiver domain CDA09_RS09305 PF05717 IS66 Orf2 like protein CDA09_RS09310 PF13005 zinc-finger binding domain of transposase IS66 CDA09_RS09310 PF13007 Transposase C of IS166 homeodomain CDA09_RS09310 PF13817 IS66 C-terminal element CDA09_RS09310 PF03050 Transposase IS66 family CDA09_RS09345 PF13542 Helix-turn-helix domain of transposase family ISL3 CDA09_RS09345 PF01610 Transposase CDA09_RS09345 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CDA09_RS09355 PF00890 FAD binding domain CDA09_RS09360 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS09360 PF00501 AMP-binding enzyme CDA09_RS09365 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS09380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09395 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS09430 PF01933 Uncharacterised protein family UPF0052 CDA09_RS09435 PF01996 F420-0:Gamma-glutamyl ligase CDA09_RS09435 PF00881 Nitroreductase family CDA09_RS09440 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS09440 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS09445 PF12697 Alpha/beta hydrolase family CDA09_RS09450 PF01425 Amidase CDA09_RS09465 PF01575 MaoC like domain CDA09_RS09470 PF02803 Thiolase, C-terminal domain CDA09_RS09470 PF00108 Thiolase, N-terminal domain CDA09_RS09475 PF07044 Protein of unknown function (DUF1329) CDA09_RS09485 PF00501 AMP-binding enzyme CDA09_RS09485 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS09490 PF02515 CoA-transferase family III CDA09_RS09495 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS09495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09505 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS09505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS09505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS09510 PF02803 Thiolase, C-terminal domain CDA09_RS09510 PF00108 Thiolase, N-terminal domain CDA09_RS09515 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS09520 PF08463 EcoEI R protein C-terminal CDA09_RS09520 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CDA09_RS09520 PF00271 Helicase conserved C-terminal domain CDA09_RS09520 PF04851 Type III restriction enzyme, res subunit CDA09_RS09535 PF01420 Type I restriction modification DNA specificity domain CDA09_RS09545 PF02384 N-6 DNA Methylase CDA09_RS09545 PF12161 HsdM N-terminal domain CDA09_RS09560 PF00106 short chain dehydrogenase CDA09_RS09565 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS09565 PF13977 BetI-type transcriptional repressor, C-terminal CDA09_RS09570 PF00501 AMP-binding enzyme CDA09_RS09570 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS09590 PF01575 MaoC like domain CDA09_RS09610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_RS09615 PF01144 Coenzyme A transferase CDA09_RS09625 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS09630 PF03060 Nitronate monooxygenase CDA09_RS09635 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS09640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09640 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS09640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09645 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS09645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09650 PF00108 Thiolase, N-terminal domain CDA09_RS09650 PF02803 Thiolase, C-terminal domain CDA09_RS09655 PF00106 short chain dehydrogenase CDA09_RS09660 PF00501 AMP-binding enzyme CDA09_RS09660 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS09665 PF00753 Metallo-beta-lactamase superfamily CDA09_RS09665 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDA09_RS09685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09685 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09695 PF00175 Oxidoreductase NAD-binding domain CDA09_RS09695 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS09695 PF00970 Oxidoreductase FAD-binding domain CDA09_RS09700 PF01012 Electron transfer flavoprotein domain CDA09_RS09705 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_RS09705 PF01012 Electron transfer flavoprotein domain CDA09_RS09725 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS09735 PF07044 Protein of unknown function (DUF1329) CDA09_RS09740 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS09745 PF14537 Cytochrome c3 CDA09_RS09745 PF00890 FAD binding domain CDA09_RS09760 PF05973 Phage derived protein Gp49-like (DUF891) CDA09_RS09765 PF01381 Helix-turn-helix CDA09_RS09770 PF07690 Major Facilitator Superfamily CDA09_RS09775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS09795 PF12833 Helix-turn-helix domain CDA09_RS09795 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDA09_RS09800 PF02625 XdhC and CoxI family CDA09_RS09800 PF13478 XdhC Rossmann domain CDA09_RS09810 PF00005 ABC transporter CDA09_RS09810 PF12848 ABC transporter CDA09_RS09825 PF04055 Radical SAM superfamily CDA09_RS09845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09845 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS09845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS09850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS09850 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS09855 PF00296 Luciferase-like monooxygenase CDA09_RS09860 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS09865 PF04480 Protein of unknown function (DUF559) CDA09_RS09875 PF02515 CoA-transferase family III CDA09_RS09880 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS09880 PF00501 AMP-binding enzyme CDA09_RS09890 PF02515 CoA-transferase family III CDA09_RS09895 PF03060 Nitronate monooxygenase CDA09_RS09905 PF01012 Electron transfer flavoprotein domain CDA09_RS09915 PF02661 Fic/DOC family CDA09_RS09920 PF02661 Fic/DOC family CDA09_RS09920 PF13784 Fic/DOC family N-terminal CDA09_RS09930 PF00171 Aldehyde dehydrogenase family CDA09_RS09935 PF04303 PrpF protein CDA09_RS09940 PF01613 Flavin reductase like domain CDA09_RS09950 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_RS09955 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDA09_RS09955 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_RS09960 PF00682 HMGL-like CDA09_RS09960 PF07836 DmpG-like communication domain CDA09_RS09965 PF07690 Major Facilitator Superfamily CDA09_RS09970 PF02515 CoA-transferase family III CDA09_RS09975 PF02515 CoA-transferase family III CDA09_RS09980 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS09995 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS10010 PF07690 Major Facilitator Superfamily CDA09_RS10020 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS10020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS10025 PF02515 CoA-transferase family III CDA09_RS10030 PF02515 CoA-transferase family III CDA09_RS10035 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDA09_RS10035 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDA09_RS10040 PF01799 [2Fe-2S] binding domain CDA09_RS10040 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS10045 PF00941 FAD binding domain in molybdopterin dehydrogenase CDA09_RS10045 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDA09_RS10055 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS10060 PF00296 Luciferase-like monooxygenase CDA09_RS10065 PF02515 CoA-transferase family III CDA09_RS10070 PF02515 CoA-transferase family III CDA09_RS10095 PF02515 CoA-transferase family III CDA09_RS10100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS10100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS10100 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS10105 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_RS10105 PF01012 Electron transfer flavoprotein domain CDA09_RS10115 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDA09_RS10115 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDA09_RS10120 PF13183 4Fe-4S dicluster domain CDA09_RS10120 PF02665 Nitrate reductase gamma subunit CDA09_RS10120 PF02754 Cysteine-rich domain CDA09_RS10140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS10140 PF01627 Hpt domain CDA09_RS10140 PF01584 CheW-like domain CDA09_RS10140 PF00072 Response regulator receiver domain CDA09_RS10150 PF00072 Response regulator receiver domain CDA09_RS10155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS10155 PF00672 HAMP domain CDA09_RS10155 PF05227 CHASE3 domain CDA09_RS10165 PF12849 PBP superfamily domain CDA09_RS10170 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS10175 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS10180 PF00005 ABC transporter CDA09_RS10190 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_RS10195 PF06234 Toluene-4-monooxygenase system protein B (TmoB) CDA09_RS10200 PF00355 Rieske [2Fe-2S] domain CDA09_RS10205 PF02406 MmoB/DmpM family CDA09_RS10210 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_RS10215 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS10215 PF00175 Oxidoreductase NAD-binding domain CDA09_RS10215 PF00970 Oxidoreductase FAD-binding domain CDA09_RS10225 PF00072 Response regulator receiver domain CDA09_RS10225 PF13426 PAS domain CDA09_RS10225 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS10225 PF08448 PAS fold CDA09_RS10225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS10230 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS10230 PF00072 Response regulator receiver domain CDA09_RS10235 PF00158 Sigma-54 interaction domain CDA09_RS10235 PF02830 V4R domain CDA09_RS10235 PF06505 Activator of aromatic catabolism CDA09_RS10235 PF02954 Bacterial regulatory protein, Fis family CDA09_RS10240 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS10245 PF06099 Phenol hydroxylase subunit CDA09_RS10250 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_RS10255 PF02406 MmoB/DmpM family CDA09_RS10260 PF04945 YHS domain CDA09_RS10260 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_RS10265 PF04663 Phenol hydroxylase conserved region CDA09_RS10270 PF00175 Oxidoreductase NAD-binding domain CDA09_RS10270 PF00970 Oxidoreductase FAD-binding domain CDA09_RS10270 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS10275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_RS10280 PF00884 Sulfatase CDA09_RS10305 PF03928 Haem-degrading CDA09_RS10310 PF00171 Aldehyde dehydrogenase family CDA09_RS10315 PF00561 alpha/beta hydrolase fold CDA09_RS10325 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDA09_RS10325 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_RS10330 PF07836 DmpG-like communication domain CDA09_RS10330 PF00682 HMGL-like CDA09_RS10340 PF01361 Tautomerase enzyme CDA09_RS10345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS10345 PF03466 LysR substrate binding domain CDA09_RS10355 PF06505 Activator of aromatic catabolism CDA09_RS10355 PF00158 Sigma-54 interaction domain CDA09_RS10355 PF02830 V4R domain CDA09_RS10355 PF02954 Bacterial regulatory protein, Fis family CDA09_RS10385 PF02371 Transposase IS116/IS110/IS902 family CDA09_RS10385 PF01548 Transposase CDA09_RS10390 PF18381 YcaO cyclodehydratase C-terminal domain CDA09_RS10390 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CDA09_RS10395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_RS10400 PF06099 Phenol hydroxylase subunit CDA09_RS10405 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_RS10410 PF02406 MmoB/DmpM family CDA09_RS10415 PF02332 Methane/Phenol/Toluene Hydroxylase CDA09_RS10415 PF04945 YHS domain CDA09_RS10425 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS10425 PF00175 Oxidoreductase NAD-binding domain CDA09_RS10425 PF00970 Oxidoreductase FAD-binding domain CDA09_RS10430 PF00171 Aldehyde dehydrogenase family CDA09_RS10435 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_RS10450 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_RS10450 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDA09_RS10455 PF00682 HMGL-like CDA09_RS10455 PF07836 DmpG-like communication domain CDA09_RS10460 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS10465 PF07730 Histidine kinase CDA09_RS10465 PF05231 MASE1 CDA09_RS10465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS10470 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS10470 PF00072 Response regulator receiver domain CDA09_RS10475 PF05138 Phenylacetic acid catabolic protein CDA09_RS10480 PF06243 Phenylacetic acid degradation B CDA09_RS10485 PF05138 Phenylacetic acid catabolic protein CDA09_RS10490 PF01883 Iron-sulfur cluster assembly protein CDA09_RS10495 PF00175 Oxidoreductase NAD-binding domain CDA09_RS10495 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS10495 PF00970 Oxidoreductase FAD-binding domain CDA09_RS10505 PF00501 AMP-binding enzyme CDA09_RS10505 PF14535 AMP-binding enzyme C-terminal domain CDA09_RS10510 PF02803 Thiolase, C-terminal domain CDA09_RS10510 PF00108 Thiolase, N-terminal domain CDA09_RS10515 PF02625 XdhC and CoxI family CDA09_RS10515 PF13478 XdhC Rossmann domain CDA09_RS10520 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDA09_RS10525 PF01799 [2Fe-2S] binding domain CDA09_RS10525 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS10530 PF00248 Aldo/keto reductase family CDA09_RS10535 PF03466 LysR substrate binding domain CDA09_RS10535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS10540 PF00582 Universal stress protein family CDA09_RS10545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS10545 PF03466 LysR substrate binding domain CDA09_RS10565 PF01070 FMN-dependent dehydrogenase CDA09_RS10570 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS10575 PF11862 Domain of unknown function (DUF3382) CDA09_RS10575 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS10580 PF00005 ABC transporter CDA09_RS10580 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS10585 PF00005 ABC transporter CDA09_RS10595 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDA09_RS10595 PF13378 Enolase C-terminal domain-like CDA09_RS10605 PF00535 Glycosyl transferase family 2 CDA09_RS10610 PF00462 Glutaredoxin CDA09_RS10620 PF04143 Sulphur transport CDA09_RS10635 PF02627 Carboxymuconolactone decarboxylase family CDA09_RS10660 PF08281 Sigma-70, region 4 CDA09_RS10660 PF04542 Sigma-70 region 2 CDA09_RS10685 PF02627 Carboxymuconolactone decarboxylase family CDA09_RS10705 PF09278 MerR, DNA binding CDA09_RS10705 PF00376 MerR family regulatory protein CDA09_RS10710 PF02411 MerT mercuric transport protein CDA09_RS10715 PF00403 Heavy-metal-associated domain CDA09_RS10720 PF00403 Heavy-metal-associated domain CDA09_RS10720 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS10720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDA09_RS10745 PF12852 Cupin CDA09_RS10745 PF12833 Helix-turn-helix domain CDA09_RS10765 PF13847 Methyltransferase domain CDA09_RS10775 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS10780 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS10785 PF00005 ABC transporter CDA09_RS10790 PF02801 Beta-ketoacyl synthase, C-terminal domain CDA09_RS10790 PF00109 Beta-ketoacyl synthase, N-terminal domain CDA09_RS10795 PF00550 Phosphopantetheine attachment site CDA09_RS10805 PF00202 Aminotransferase class-III CDA09_RS10825 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDA09_RS10845 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS10845 PF00072 Response regulator receiver domain CDA09_RS10850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS10850 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS10855 PF00072 Response regulator receiver domain CDA09_RS10855 PF13426 PAS domain CDA09_RS10855 PF08448 PAS fold CDA09_RS10855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS10855 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS10860 PF00072 Response regulator receiver domain CDA09_RS10865 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS10865 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS10865 PF00563 EAL domain CDA09_RS10870 PF02277 Phosphoribosyltransferase CDA09_RS10875 PF06253 Trimethylamine methyltransferase (MTTB) CDA09_RS10885 PF01965 DJ-1/PfpI family CDA09_RS10885 PF12833 Helix-turn-helix domain CDA09_RS10900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS10905 PF02754 Cysteine-rich domain CDA09_RS10905 PF13183 4Fe-4S dicluster domain CDA09_RS10910 PF01012 Electron transfer flavoprotein domain CDA09_RS10910 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_RS10925 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDA09_RS10930 PF00005 ABC transporter CDA09_RS10930 PF00571 CBS domain CDA09_RS10935 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS10940 PF12833 Helix-turn-helix domain CDA09_RS10940 PF01965 DJ-1/PfpI family CDA09_RS10945 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDA09_RS10945 PF00355 Rieske [2Fe-2S] domain CDA09_RS10950 PF00970 Oxidoreductase FAD-binding domain CDA09_RS10950 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS10950 PF00175 Oxidoreductase NAD-binding domain CDA09_RS10955 PF13417 Glutathione S-transferase, N-terminal domain CDA09_RS10965 PF07690 Major Facilitator Superfamily CDA09_RS10995 PF03591 AzlC protein CDA09_RS11010 PF01381 Helix-turn-helix CDA09_RS11010 PF07883 Cupin domain CDA09_RS11020 PF12833 Helix-turn-helix domain CDA09_RS11025 PF06253 Trimethylamine methyltransferase (MTTB) CDA09_RS11035 PF03466 LysR substrate binding domain CDA09_RS11035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS11040 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDA09_RS11040 PF00355 Rieske [2Fe-2S] domain CDA09_RS11045 PF00571 CBS domain CDA09_RS11045 PF00005 ABC transporter CDA09_RS11050 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS11055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDA09_RS11065 PF12833 Helix-turn-helix domain CDA09_RS11065 PF01965 DJ-1/PfpI family CDA09_RS11070 PF00701 Dihydrodipicolinate synthetase family CDA09_RS11075 PF01266 FAD dependent oxidoreductase CDA09_RS11080 PF00171 Aldehyde dehydrogenase family CDA09_RS11085 PF00175 Oxidoreductase NAD-binding domain CDA09_RS11085 PF00042 Globin CDA09_RS11085 PF00970 Oxidoreductase FAD-binding domain CDA09_RS11090 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS11090 PF00563 EAL domain CDA09_RS11090 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS11095 PF08245 Mur ligase middle domain CDA09_RS11095 PF02875 Mur ligase family, glutamate ligase domain CDA09_RS11100 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDA09_RS11100 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDA09_RS11105 PF00551 Formyl transferase CDA09_RS11110 PF02310 B12 binding domain CDA09_RS11110 PF02607 B12 binding domain CDA09_RS11145 PF07690 Major Facilitator Superfamily CDA09_RS11150 PF03466 LysR substrate binding domain CDA09_RS11150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS11155 PF03466 LysR substrate binding domain CDA09_RS11155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS11170 PF01965 DJ-1/PfpI family CDA09_RS11170 PF12833 Helix-turn-helix domain CDA09_RS11175 PF03466 LysR substrate binding domain CDA09_RS11175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS11180 PF01968 Hydantoinase/oxoprolinase CDA09_RS11180 PF05378 Hydantoinase/oxoprolinase N-terminal region CDA09_RS11195 PF02310 B12 binding domain CDA09_RS11195 PF02607 B12 binding domain CDA09_RS11200 PF00809 Pterin binding enzyme CDA09_RS11200 PF02310 B12 binding domain CDA09_RS11200 PF02607 B12 binding domain CDA09_RS11200 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDA09_RS11200 PF02574 Homocysteine S-methyltransferase CDA09_RS11215 PF00464 Serine hydroxymethyltransferase CDA09_RS11220 PF03315 Serine dehydratase beta chain CDA09_RS11220 PF03313 Serine dehydratase alpha chain CDA09_RS11225 PF01266 FAD dependent oxidoreductase CDA09_RS11235 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDA09_RS11235 PF17806 Sarcosine oxidase A3 domain CDA09_RS11235 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS11235 PF01571 Aminomethyltransferase folate-binding domain CDA09_RS11270 PF00005 ABC transporter CDA09_RS11270 PF09383 NIL domain CDA09_RS11275 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS11280 PF03180 NLPA lipoprotein CDA09_RS11285 PF02152 Dihydroneopterin aldolase CDA09_RS11295 PF00155 Aminotransferase class I and II CDA09_RS11305 PF09176 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal CDA09_RS11315 PF02289 Cyclohydrolase (MCH) CDA09_RS11320 PF18030 RimK PreATP-grasp domain CDA09_RS11320 PF08443 RimK-like ATP-grasp domain CDA09_RS11330 PF08714 Formaldehyde-activating enzyme (Fae) CDA09_RS11340 PF00158 Sigma-54 interaction domain CDA09_RS11340 PF02954 Bacterial regulatory protein, Fis family CDA09_RS11340 PF01590 GAF domain CDA09_RS11350 PF00977 Histidine biosynthesis protein CDA09_RS11390 PF02321 Outer membrane efflux protein CDA09_RS11395 PF00072 Response regulator receiver domain CDA09_RS11395 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS11400 PF00672 HAMP domain CDA09_RS11400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS11400 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS11415 PF00873 AcrB/AcrD/AcrF family CDA09_RS11440 PF00892 EamA-like transporter family CDA09_RS11470 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS11520 PF07969 Amidohydrolase family CDA09_RS11540 PF00425 chorismate binding enzyme CDA09_RS11540 PF00117 Glutamine amidotransferase class-I CDA09_RS11540 PF04715 Anthranilate synthase component I, N terminal region CDA09_RS11550 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDA09_RS11550 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDA09_RS11555 PF01227 GTP cyclohydrolase I CDA09_RS11560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS11560 PF03466 LysR substrate binding domain CDA09_RS11565 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CDA09_RS11565 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CDA09_RS11570 PF00101 Ribulose bisphosphate carboxylase, small chain CDA09_RS11575 PF17866 AAA lid domain CDA09_RS11575 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_RS11580 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CDA09_RS11585 PF00485 Phosphoribulokinase / Uridine kinase family CDA09_RS11590 PF02779 Transketolase, pyrimidine binding domain CDA09_RS11590 PF02780 Transketolase, C-terminal domain CDA09_RS11590 PF00456 Transketolase, thiamine diphosphate binding domain CDA09_RS11595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDA09_RS11595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDA09_RS11600 PF00162 Phosphoglycerate kinase CDA09_RS11605 PF01116 Fructose-bisphosphate aldolase class-II CDA09_RS11610 PF00689 Cation transporting ATPase, C-terminus CDA09_RS11610 PF00690 Cation transporter/ATPase, N-terminus CDA09_RS11625 PF03824 High-affinity nickel-transport protein CDA09_RS11635 PF00005 ABC transporter CDA09_RS11635 PF08402 TOBE domain CDA09_RS11640 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS11645 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS11675 PF01758 Sodium Bile acid symporter family CDA09_RS11680 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDA09_RS11690 PF02798 Glutathione S-transferase, N-terminal domain CDA09_RS11695 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_RS11695 PF00107 Zinc-binding dehydrogenase CDA09_RS11725 PF01361 Tautomerase enzyme CDA09_RS11730 PF00270 DEAD/DEAH box helicase CDA09_RS11730 PF17191 RecG wedge domain CDA09_RS11730 PF00271 Helicase conserved C-terminal domain CDA09_RS11735 PF02558 Ketopantoate reductase PanE/ApbA CDA09_RS11735 PF08546 Ketopantoate reductase PanE/ApbA C terminal CDA09_RS11740 PF07759 Protein of unknown function (DUF1615) CDA09_RS11745 PF00301 Rubredoxin CDA09_RS11750 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS11755 PF00501 AMP-binding enzyme CDA09_RS11755 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS11760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS11760 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS11760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS11765 PF12802 MarR family CDA09_RS11770 PF00106 short chain dehydrogenase CDA09_RS11775 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS11780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS11780 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS11780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS11785 PF00881 Nitroreductase family CDA09_RS11790 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_RS11795 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS11800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS11800 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CDA09_RS11800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS11805 PF02803 Thiolase, C-terminal domain CDA09_RS11805 PF00108 Thiolase, N-terminal domain CDA09_RS11820 PF13419 Haloacid dehalogenase-like hydrolase CDA09_RS11830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDA09_RS11830 PF00205 Thiamine pyrophosphate enzyme, central domain CDA09_RS11830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_RS11835 PF01037 Lrp/AsnC ligand binding domain CDA09_RS11840 PF05951 Bacterial protein of unknown function (DUF882) CDA09_RS11845 PF01471 Putative peptidoglycan binding domain CDA09_RS11845 PF03734 L,D-transpeptidase catalytic domain CDA09_RS11850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDA09_RS11850 PF02817 e3 binding domain CDA09_RS11850 PF00364 Biotin-requiring enzyme CDA09_RS11855 PF02779 Transketolase, pyrimidine binding domain CDA09_RS11855 PF02780 Transketolase, C-terminal domain CDA09_RS11860 PF00676 Dehydrogenase E1 component CDA09_RS11865 PF02743 Cache domain CDA09_RS11865 PF00672 HAMP domain CDA09_RS11865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS11880 PF00580 UvrD/REP helicase N-terminal domain CDA09_RS11880 PF13361 UvrD-like helicase C-terminal domain CDA09_RS11890 PF00578 AhpC/TSA family CDA09_RS11895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDA09_RS11900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDA09_RS11900 PF00005 ABC transporter CDA09_RS11905 PF01476 LysM domain CDA09_RS11905 PF01464 Transglycosylase SLT domain CDA09_RS11910 PF00753 Metallo-beta-lactamase superfamily CDA09_RS11910 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDA09_RS11920 PF00075 RNase H CDA09_RS11925 PF00929 Exonuclease CDA09_RS11940 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDA09_RS11950 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS11950 PF00034 Cytochrome c CDA09_RS11965 PF01590 GAF domain CDA09_RS11965 PF00563 EAL domain CDA09_RS11965 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS11965 PF00360 Phytochrome region CDA09_RS11970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_RS11970 PF01568 Molydopterin dinucleotide binding domain CDA09_RS11970 PF00384 Molybdopterin oxidoreductase CDA09_RS11980 PF00034 Cytochrome c CDA09_RS11980 PF03150 Di-haem cytochrome c peroxidase CDA09_RS11985 PF00034 Cytochrome c CDA09_RS11985 PF03150 Di-haem cytochrome c peroxidase CDA09_RS11990 PF00158 Sigma-54 interaction domain CDA09_RS11990 PF00072 Response regulator receiver domain CDA09_RS11990 PF02954 Bacterial regulatory protein, Fis family CDA09_RS11995 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS11995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS12000 PF01053 Cys/Met metabolism PLP-dependent enzyme CDA09_RS12005 PF00892 EamA-like transporter family CDA09_RS12010 PF00034 Cytochrome c CDA09_RS12010 PF03150 Di-haem cytochrome c peroxidase CDA09_RS12020 PF00899 ThiF family CDA09_RS12025 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_RS12030 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDA09_RS12030 PF00578 AhpC/TSA family CDA09_RS12055 PF04241 Protein of unknown function (DUF423) CDA09_RS12060 PF07690 Major Facilitator Superfamily CDA09_RS12065 PF00005 ABC transporter CDA09_RS12070 PF00005 ABC transporter CDA09_RS12070 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS12075 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS12075 PF11862 Domain of unknown function (DUF3382) CDA09_RS12080 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS12090 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS12090 PF00501 AMP-binding enzyme CDA09_RS12100 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS12105 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_RS12105 PF00107 Zinc-binding dehydrogenase CDA09_RS12110 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS12120 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDA09_RS12120 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDA09_RS12120 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS12145 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_RS12150 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_RS12155 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_RS12160 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_RS12165 PF01202 Shikimate kinase CDA09_RS12175 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDA09_RS12210 PF07995 Glucose / Sorbosone dehydrogenase CDA09_RS12230 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS12230 PF07729 FCD domain CDA09_RS12235 PF13458 Periplasmic binding protein CDA09_RS12240 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS12245 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS12245 PF11862 Domain of unknown function (DUF3382) CDA09_RS12250 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS12250 PF00005 ABC transporter CDA09_RS12255 PF00005 ABC transporter CDA09_RS12265 PF00072 Response regulator receiver domain CDA09_RS12265 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS12270 PF07730 Histidine kinase CDA09_RS12270 PF17200 Single Cache domain 2 CDA09_RS12275 PF13722 5TM C-terminal transporter carbon starvation CstA CDA09_RS12275 PF02554 Carbon starvation protein CstA CDA09_RS12280 PF04328 Selenoprotein, putative CDA09_RS12285 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDA09_RS12285 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDA09_RS12295 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS12295 PF00563 EAL domain CDA09_RS12295 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS12300 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDA09_RS12300 PF00072 Response regulator receiver domain CDA09_RS12300 PF01627 Hpt domain CDA09_RS12300 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS12300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS12300 PF00672 HAMP domain CDA09_RS12305 PF04102 SlyX CDA09_RS12315 PF06779 Uncharacterised MFS-type transporter YbfB CDA09_RS12325 PF01926 50S ribosome-binding GTPase CDA09_RS12345 PF00171 Aldehyde dehydrogenase family CDA09_RS12350 PF00571 CBS domain CDA09_RS12350 PF01595 Cyclin M transmembrane N-terminal domain CDA09_RS12350 PF03471 Transporter associated domain CDA09_RS12355 PF07152 YaeQ protein CDA09_RS12365 PF01636 Phosphotransferase enzyme family CDA09_RS12370 PF01227 GTP cyclohydrolase I CDA09_RS12380 PF01384 Phosphate transporter family CDA09_RS12390 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CDA09_RS12395 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_RS12415 PF00877 NlpC/P60 family CDA09_RS12420 PF04977 Septum formation initiator CDA09_RS12425 PF03952 Enolase, N-terminal domain CDA09_RS12425 PF00113 Enolase, C-terminal TIM barrel domain CDA09_RS12430 PF00793 DAHP synthetase I family CDA09_RS12435 PF00117 Glutamine amidotransferase class-I CDA09_RS12435 PF06418 CTP synthase N-terminus CDA09_RS12445 PF00857 Isochorismatase family CDA09_RS12465 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CDA09_RS12465 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CDA09_RS12465 PF02769 AIR synthase related protein, C-terminal domain CDA09_RS12475 PF00535 Glycosyl transferase family 2 CDA09_RS12480 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CDA09_RS12485 PF01569 PAP2 superfamily CDA09_RS12505 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS12505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS12520 PF02896 PEP-utilising enzyme, TIM barrel domain CDA09_RS12520 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDA09_RS12520 PF00391 PEP-utilising enzyme, mobile domain CDA09_RS12525 PF03618 Kinase/pyrophosphorylase CDA09_RS12535 PF01641 SelR domain CDA09_RS12550 PF03772 Competence protein CDA09_RS12550 PF00753 Metallo-beta-lactamase superfamily CDA09_RS12555 PF00005 ABC transporter CDA09_RS12560 PF12704 MacB-like periplasmic core domain CDA09_RS12560 PF02687 FtsX-like permease family CDA09_RS12565 PF02652 L-lactate permease CDA09_RS12585 PF02272 DHHA1 domain CDA09_RS12585 PF01368 DHH family CDA09_RS12585 PF17768 RecJ OB domain CDA09_RS12590 PF03922 OmpW family CDA09_RS12610 PF02463 RecF/RecN/SMC N terminal domain CDA09_RS12610 PF06470 SMC proteins Flexible Hinge Domain CDA09_RS12620 PF07690 Major Facilitator Superfamily CDA09_RS12625 PF01546 Peptidase family M20/M25/M40 CDA09_RS12625 PF07687 Peptidase dimerisation domain CDA09_RS12635 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain CDA09_RS12635 PF00730 HhH-GPD superfamily base excision DNA repair protein CDA09_RS12640 PF02805 Metal binding domain of Ada CDA09_RS12640 PF12833 Helix-turn-helix domain CDA09_RS12640 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDA09_RS12640 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDA09_RS12645 PF12843 Putative quorum-sensing-regulated virulence factor CDA09_RS12650 PF01546 Peptidase family M20/M25/M40 CDA09_RS12650 PF07687 Peptidase dimerisation domain CDA09_RS12660 PF03109 ABC1 family CDA09_RS12665 PF02687 FtsX-like permease family CDA09_RS12665 PF00005 ABC transporter CDA09_RS12665 PF12704 MacB-like periplasmic core domain CDA09_RS12675 PF13533 Biotin-lipoyl like CDA09_RS12680 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS12685 PF18073 Rubredoxin metal binding domain CDA09_RS12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS12690 PF03466 LysR substrate binding domain CDA09_RS12695 PF07690 Major Facilitator Superfamily CDA09_RS12700 PF03167 Uracil DNA glycosylase superfamily CDA09_RS12705 PF00583 Acetyltransferase (GNAT) family CDA09_RS12710 PF00814 Glycoprotease family CDA09_RS12720 PF00072 Response regulator receiver domain CDA09_RS12720 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS12725 PF00672 HAMP domain CDA09_RS12725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS12725 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS12730 PF04279 Intracellular septation protein A CDA09_RS12735 PF03795 YCII-related domain CDA09_RS12740 PF01722 BolA-like protein CDA09_RS12750 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDA09_RS12750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS12750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS12750 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS12755 PF01012 Electron transfer flavoprotein domain CDA09_RS12755 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_RS12760 PF01012 Electron transfer flavoprotein domain CDA09_RS12765 PF08361 MAATS-type transcriptional repressor, C-terminal region CDA09_RS12765 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS12770 PF01026 TatD related DNase CDA09_RS12775 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS12790 PF00005 ABC transporter CDA09_RS12795 PF02405 Permease MlaE CDA09_RS12800 PF02541 Ppx/GppA phosphatase family CDA09_RS12805 PF13089 Polyphosphate kinase N-terminal domain CDA09_RS12805 PF17941 Polyphosphate kinase C-terminal domain 1 CDA09_RS12805 PF13090 Polyphosphate kinase C-terminal domain 2 CDA09_RS12805 PF02503 Polyphosphate kinase middle domain CDA09_RS12810 PF13291 ACT domain CDA09_RS12810 PF02824 TGS domain CDA09_RS12810 PF04607 Region found in RelA / SpoT proteins CDA09_RS12840 PF02542 YgbB family CDA09_RS12845 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDA09_RS12855 PF01875 Memo-like protein CDA09_RS12860 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDA09_RS12860 PF01871 AMMECR1 CDA09_RS12865 PF04055 Radical SAM superfamily CDA09_RS12865 PF13187 4Fe-4S dicluster domain CDA09_RS12870 PF00156 Phosphoribosyl transferase domain CDA09_RS12870 PF01738 Dienelactone hydrolase family CDA09_RS12875 PF02559 CarD-like/TRCF domain CDA09_RS12875 PF17757 UvrB interaction domain CDA09_RS12875 PF00270 DEAD/DEAH box helicase CDA09_RS12875 PF03461 TRCF domain CDA09_RS12875 PF00271 Helicase conserved C-terminal domain CDA09_RS12890 PF17850 CysA C-terminal regulatory domain CDA09_RS12890 PF00005 ABC transporter CDA09_RS12890 PF12857 TOBE-like domain CDA09_RS12895 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS12900 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS12915 PF02600 Disulfide bond formation protein DsbB CDA09_RS12925 PF04264 YceI-like domain CDA09_RS12940 PF01584 CheW-like domain CDA09_RS12940 PF01627 Hpt domain CDA09_RS12940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS12940 PF07194 P2 response regulator binding domain CDA09_RS12940 PF02895 Signal transducing histidine kinase, homodimeric domain CDA09_RS12945 PF00072 Response regulator receiver domain CDA09_RS12955 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CDA09_RS12955 PF11892 Domain of unknown function (DUF3412) CDA09_RS12955 PF03641 Possible lysine decarboxylase CDA09_RS12975 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDA09_RS12985 PF13085 2Fe-2S iron-sulfur cluster binding domain CDA09_RS12990 PF00027 Cyclic nucleotide-binding domain CDA09_RS12990 PF13545 Crp-like helix-turn-helix domain CDA09_RS12995 PF00037 4Fe-4S binding domain CDA09_RS12995 PF11953 Domain of unknown function (DUF3470) CDA09_RS13005 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS13005 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS13005 PF00563 EAL domain CDA09_RS13015 PF00691 OmpA family CDA09_RS13040 PF00271 Helicase conserved C-terminal domain CDA09_RS13040 PF00176 SNF2 family N-terminal domain CDA09_RS13060 PF11855 Protein of unknown function (DUF3375) CDA09_RS13070 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system CDA09_RS13075 PF02540 NAD synthase CDA09_RS13075 PF00958 GMP synthase C terminal domain CDA09_RS13075 PF00117 Glutamine amidotransferase class-I CDA09_RS13080 PF00571 CBS domain CDA09_RS13080 PF00478 IMP dehydrogenase / GMP reductase domain CDA09_RS13090 PF03658 RnfH family Ubiquitin CDA09_RS13095 PF03364 Polyketide cyclase / dehydrase and lipid transport CDA09_RS13100 PF01668 SmpB protein CDA09_RS13105 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CDA09_RS13110 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS13110 PF12911 N-terminal TM domain of oligopeptide transport permease C CDA09_RS13115 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS13120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDA09_RS13130 PF05698 Bacterial trigger factor protein (TF) C-terminus CDA09_RS13135 PF10431 C-terminal, D2-small domain, of ClpB protein CDA09_RS13135 PF02861 Clp amino terminal domain, pathogenicity island component CDA09_RS13135 PF17871 AAA lid domain CDA09_RS13135 PF07724 AAA domain (Cdc48 subfamily) CDA09_RS13135 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_RS13145 PF02391 MoaE protein CDA09_RS13150 PF02597 ThiS family CDA09_RS13155 PF00994 Probable molybdopterin binding domain CDA09_RS13155 PF03454 MoeA C-terminal region (domain IV) CDA09_RS13155 PF03453 MoeA N-terminal region (domain I and II) CDA09_RS13160 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CDA09_RS13170 PF13307 Helicase C-terminal domain CDA09_RS13170 PF04851 Type III restriction enzyme, res subunit CDA09_RS13180 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS13180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDA09_RS13185 PF02817 e3 binding domain CDA09_RS13185 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDA09_RS13185 PF00364 Biotin-requiring enzyme CDA09_RS13190 PF16870 2-oxoglutarate dehydrogenase C-terminal CDA09_RS13190 PF00676 Dehydrogenase E1 component CDA09_RS13190 PF02779 Transketolase, pyrimidine binding domain CDA09_RS13190 PF16078 2-oxoglutarate dehydrogenase N-terminus CDA09_RS13195 PF00285 Citrate synthase, C-terminal domain CDA09_RS13200 PF03937 Flavinator of succinate dehydrogenase CDA09_RS13205 PF13085 2Fe-2S iron-sulfur cluster binding domain CDA09_RS13210 PF00890 FAD binding domain CDA09_RS13210 PF02910 Fumarate reductase flavoprotein C-term CDA09_RS13225 PF07702 UTRA domain CDA09_RS13225 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS13230 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDA09_RS13230 PF00056 lactate/malate dehydrogenase, NAD binding domain CDA09_RS13240 PF01176 Translation initiation factor 1A / IF-1 CDA09_RS13245 PF00211 Adenylate and Guanylate cyclase catalytic domain CDA09_RS13255 PF13416 Bacterial extracellular solute-binding protein CDA09_RS13270 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS13275 PF00005 ABC transporter CDA09_RS13275 PF08402 TOBE domain CDA09_RS13280 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CDA09_RS13285 PF04376 Arginine-tRNA-protein transferase, N terminus CDA09_RS13285 PF04377 Arginine-tRNA-protein transferase, C terminus CDA09_RS13290 PF01180 Dihydroorotate dehydrogenase CDA09_RS13295 PF02508 Rnf-Nqr subunit, membrane protein CDA09_RS13300 PF04060 Putative Fe-S cluster CDA09_RS13305 PF13375 RnfC Barrel sandwich hybrid domain CDA09_RS13305 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDA09_RS13305 PF13237 4Fe-4S dicluster domain CDA09_RS13305 PF10531 SLBB domain CDA09_RS13310 PF03116 NQR2, RnfD, RnfE family CDA09_RS13315 PF04205 FMN-binding domain CDA09_RS13320 PF02508 Rnf-Nqr subunit, membrane protein CDA09_RS13325 PF10576 Iron-sulfur binding domain of endonuclease III CDA09_RS13325 PF00633 Helix-hairpin-helix motif CDA09_RS13325 PF00730 HhH-GPD superfamily base excision DNA repair protein CDA09_RS13335 PF01434 Peptidase family M41 CDA09_RS13335 PF17862 AAA+ lid domain CDA09_RS13335 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_RS13350 PF00654 Voltage gated chloride channel CDA09_RS13355 PF00183 Hsp90 protein CDA09_RS13355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS13360 PF01272 Transcription elongation factor, GreA/GreB, C-term CDA09_RS13360 PF03449 Transcription elongation factor, N-terminal CDA09_RS13395 PF01522 Polysaccharide deacetylase CDA09_RS13400 PF02801 Beta-ketoacyl synthase, C-terminal domain CDA09_RS13400 PF00109 Beta-ketoacyl synthase, N-terminal domain CDA09_RS13440 PF00106 short chain dehydrogenase CDA09_RS13455 PF00717 Peptidase S24-like CDA09_RS13455 PF01726 LexA DNA binding domain CDA09_RS13475 PF01548 Transposase CDA09_RS13475 PF02371 Transposase IS116/IS110/IS902 family CDA09_RS13495 PF01695 IstB-like ATP binding protein CDA09_RS13500 PF00665 Integrase core domain CDA09_RS13515 PF00355 Rieske [2Fe-2S] domain CDA09_RS13515 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDA09_RS13520 PF00866 Ring hydroxylating beta subunit CDA09_RS13540 PF07690 Major Facilitator Superfamily CDA09_RS13555 PF00107 Zinc-binding dehydrogenase CDA09_RS13555 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_RS13565 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS13585 PF07044 Protein of unknown function (DUF1329) CDA09_RS13595 PF00106 short chain dehydrogenase CDA09_RS13600 PF00108 Thiolase, N-terminal domain CDA09_RS13600 PF02803 Thiolase, C-terminal domain CDA09_RS13605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS13605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS13610 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_RS13625 PF00106 short chain dehydrogenase CDA09_RS13635 PF14759 Reductase C-terminal CDA09_RS13635 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS13640 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS13645 PF07690 Major Facilitator Superfamily CDA09_RS13650 PF00866 Ring hydroxylating beta subunit CDA09_RS13655 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDA09_RS13655 PF00355 Rieske [2Fe-2S] domain CDA09_RS13660 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_RS13700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_RS13720 PF00766 Electron transfer flavoprotein FAD-binding domain CDA09_RS13720 PF01012 Electron transfer flavoprotein domain CDA09_RS13725 PF01012 Electron transfer flavoprotein domain CDA09_RS13735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS13735 PF03466 LysR substrate binding domain CDA09_RS13745 PF00589 Phage integrase family CDA09_RS13745 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_RS13750 PF00589 Phage integrase family CDA09_RS13755 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_RS13755 PF00589 Phage integrase family CDA09_RS13760 PF04986 Putative transposase CDA09_RS13760 PF14319 Transposase zinc-binding domain CDA09_RS13775 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_RS13775 PF00589 Phage integrase family CDA09_RS13780 PF00589 Phage integrase family CDA09_RS13785 PF00589 Phage integrase family CDA09_RS13785 PF02899 Phage integrase, N-terminal SAM-like domain CDA09_RS13795 PF00665 Integrase core domain CDA09_RS13800 PF01695 IstB-like ATP binding protein CDA09_RS13820 PF01227 GTP cyclohydrolase I CDA09_RS13825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS13825 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS13825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS13830 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS13835 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS13835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS13835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS13840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS13840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS13840 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS13850 PF00067 Cytochrome P450 CDA09_RS13870 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS13870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS13870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS13880 PF02515 CoA-transferase family III CDA09_RS13900 PF00067 Cytochrome P450 CDA09_RS13905 PF08361 MAATS-type transcriptional repressor, C-terminal region CDA09_RS13905 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS13910 PF01593 Flavin containing amine oxidoreductase CDA09_RS13920 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS13920 PF00501 AMP-binding enzyme CDA09_RS13930 PF00563 EAL domain CDA09_RS13930 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS13930 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS13935 PF00925 GTP cyclohydrolase II CDA09_RS13980 PF13614 AAA domain CDA09_RS14090 PF13098 Thioredoxin-like domain CDA09_RS14090 PF10411 Disulfide bond isomerase protein N-terminus CDA09_RS14130 PF04002 RadC-like JAB domain CDA09_RS14150 PF00563 EAL domain CDA09_RS14150 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS14150 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS14170 PF17761 DUF1016 N-terminal domain CDA09_RS14170 PF06250 YhcG PDDEXK nuclease domain CDA09_RS14175 PF12161 HsdM N-terminal domain CDA09_RS14175 PF02384 N-6 DNA Methylase CDA09_RS14180 PF04851 Type III restriction enzyme, res subunit CDA09_RS14180 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CDA09_RS14180 PF00271 Helicase conserved C-terminal domain CDA09_RS14180 PF08463 EcoEI R protein C-terminal CDA09_RS14270 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDA09_RS14275 PF13542 Helix-turn-helix domain of transposase family ISL3 CDA09_RS14275 PF01610 Transposase CDA09_RS14275 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CDA09_RS14280 PF00575 S1 RNA binding domain CDA09_RS14280 PF00013 KH domain CDA09_RS14280 PF01138 3' exoribonuclease family, domain 1 CDA09_RS14280 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CDA09_RS14280 PF03725 3' exoribonuclease family, domain 2 CDA09_RS14285 PF00312 Ribosomal protein S15 CDA09_RS14290 PF01509 TruB family pseudouridylate synthase (N terminal domain) CDA09_RS14290 PF09157 Pseudouridine synthase II TruB, C-terminal CDA09_RS14290 PF16198 tRNA pseudouridylate synthase B C-terminal domain CDA09_RS14295 PF02033 Ribosome-binding factor A CDA09_RS14300 PF11987 Translation-initiation factor 2 CDA09_RS14300 PF00009 Elongation factor Tu GTP binding domain CDA09_RS14300 PF08364 Bacterial translation initiation factor IF-2 associated region CDA09_RS14300 PF04760 Translation initiation factor IF-2, N-terminal region CDA09_RS14305 PF08529 NusA N-terminal domain CDA09_RS14305 PF13184 NusA-like KH domain CDA09_RS14310 PF02576 RimP N-terminal domain CDA09_RS14310 PF17384 RimP C-terminal SH3 domain CDA09_RS14315 PF01479 S4 domain CDA09_RS14315 PF00849 RNA pseudouridylate synthase CDA09_RS14320 PF04079 Segregation and condensation complex subunit ScpB CDA09_RS14325 PF02616 Segregation and condensation protein ScpA CDA09_RS14330 PF00579 tRNA synthetases class I (W and Y) CDA09_RS14335 PF02163 Peptidase family M50 CDA09_RS14340 PF01300 Telomere recombination CDA09_RS14345 PF02811 PHP domain CDA09_RS14350 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDA09_RS14350 PF01571 Aminomethyltransferase folate-binding domain CDA09_RS14355 PF01597 Glycine cleavage H-protein CDA09_RS14360 PF02347 Glycine cleavage system P-protein CDA09_RS14375 PF07238 PilZ domain CDA09_RS14375 PF00535 Glycosyl transferase family 2 CDA09_RS14375 PF03552 Cellulose synthase CDA09_RS14380 PF03466 LysR substrate binding domain CDA09_RS14380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS14385 PF00970 Oxidoreductase FAD-binding domain CDA09_RS14385 PF00175 Oxidoreductase NAD-binding domain CDA09_RS14395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDA09_RS14395 PF00364 Biotin-requiring enzyme CDA09_RS14395 PF02817 e3 binding domain CDA09_RS14400 PF00563 EAL domain CDA09_RS14400 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS14400 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS14405 PF00005 ABC transporter CDA09_RS14405 PF12848 ABC transporter CDA09_RS14410 PF00753 Metallo-beta-lactamase superfamily CDA09_RS14415 PF02080 TrkA-C domain CDA09_RS14415 PF03471 Transporter associated domain CDA09_RS14415 PF00999 Sodium/hydrogen exchanger family CDA09_RS14430 PF02687 FtsX-like permease family CDA09_RS14430 PF12704 MacB-like periplasmic core domain CDA09_RS14435 PF00005 ABC transporter CDA09_RS14445 PF13426 PAS domain CDA09_RS14445 PF08447 PAS fold CDA09_RS14445 PF00563 EAL domain CDA09_RS14445 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS14445 PF08448 PAS fold CDA09_RS14445 PF05231 MASE1 CDA09_RS14460 PF01593 Flavin containing amine oxidoreductase CDA09_RS14465 PF00005 ABC transporter CDA09_RS14470 PF13472 GDSL-like Lipase/Acylhydrolase family CDA09_RS14475 PF02769 AIR synthase related protein, C-terminal domain CDA09_RS14475 PF00586 AIR synthase related protein, N-terminal domain CDA09_RS14480 PF00581 Rhodanese-like domain CDA09_RS14485 PF02954 Bacterial regulatory protein, Fis family CDA09_RS14485 PF00072 Response regulator receiver domain CDA09_RS14485 PF00158 Sigma-54 interaction domain CDA09_RS14490 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS14490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS14495 PF00664 ABC transporter transmembrane region CDA09_RS14495 PF00005 ABC transporter CDA09_RS14505 PF00171 Aldehyde dehydrogenase family CDA09_RS14510 PF13607 Succinyl-CoA ligase like flavodoxin domain CDA09_RS14510 PF00583 Acetyltransferase (GNAT) family CDA09_RS14510 PF13380 CoA binding domain CDA09_RS14520 PF00575 S1 RNA binding domain CDA09_RS14520 PF16921 Tex protein YqgF-like domain CDA09_RS14520 PF17674 HHH domain CDA09_RS14520 PF09371 Tex-like protein N-terminal domain CDA09_RS14525 PF03960 ArsC family CDA09_RS14530 PF01430 Hsp33 protein CDA09_RS14535 PF05209 Septum formation inhibitor MinC, N-terminal domain CDA09_RS14535 PF03775 Septum formation inhibitor MinC, C-terminal domain CDA09_RS14540 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDA09_RS14545 PF03776 Septum formation topological specificity factor MinE CDA09_RS14550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS14550 PF02743 Cache domain CDA09_RS14550 PF00672 HAMP domain CDA09_RS14555 PF00152 tRNA synthetases class II (D, K and N) CDA09_RS14555 PF01336 OB-fold nucleic acid binding domain CDA09_RS14560 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CDA09_RS14560 PF01266 FAD dependent oxidoreductase CDA09_RS14565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS14565 PF07730 Histidine kinase CDA09_RS14570 PF00072 Response regulator receiver domain CDA09_RS14570 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS14590 PF02954 Bacterial regulatory protein, Fis family CDA09_RS14590 PF00158 Sigma-54 interaction domain CDA09_RS14590 PF02830 V4R domain CDA09_RS14590 PF06505 Activator of aromatic catabolism CDA09_RS14595 PF00550 Phosphopantetheine attachment site CDA09_RS14595 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS14595 PF08241 Methyltransferase domain CDA09_RS14595 PF00668 Condensation domain CDA09_RS14595 PF00391 PEP-utilising enzyme, mobile domain CDA09_RS14595 PF00975 Thioesterase domain CDA09_RS14595 PF00501 AMP-binding enzyme CDA09_RS14600 PF00391 PEP-utilising enzyme, mobile domain CDA09_RS14600 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDA09_RS14600 PF02896 PEP-utilising enzyme, TIM barrel domain CDA09_RS14605 PF00571 CBS domain CDA09_RS14610 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CDA09_RS14620 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CDA09_RS14630 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CDA09_RS14635 PF02441 Flavoprotein CDA09_RS14645 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CDA09_RS14645 PF09297 NADH pyrophosphatase zinc ribbon domain CDA09_RS14645 PF00293 NUDIX domain CDA09_RS14660 PF00149 Calcineurin-like phosphoesterase CDA09_RS14675 PF00293 NUDIX domain CDA09_RS14675 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CDA09_RS14675 PF09297 NADH pyrophosphatase zinc ribbon domain CDA09_RS14700 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS14700 PF00155 Aminotransferase class I and II CDA09_RS14705 PF00563 EAL domain CDA09_RS14705 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS14705 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS14710 PF00072 Response regulator receiver domain CDA09_RS14715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS14715 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS14715 PF13188 PAS domain CDA09_RS14715 PF00989 PAS fold CDA09_RS14720 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDA09_RS14720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS14720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS14720 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS14725 PF00106 short chain dehydrogenase CDA09_RS14730 PF02803 Thiolase, C-terminal domain CDA09_RS14730 PF00108 Thiolase, N-terminal domain CDA09_RS14735 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS14740 PF00501 AMP-binding enzyme CDA09_RS14740 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS14750 PF00005 ABC transporter CDA09_RS14755 PF00005 ABC transporter CDA09_RS14755 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS14765 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS14765 PF17932 Tetracyclin repressor-like, C-terminal domain CDA09_RS14770 PF01738 Dienelactone hydrolase family CDA09_RS14770 PF00156 Phosphoribosyl transferase domain CDA09_RS14775 PF13426 PAS domain CDA09_RS14775 PF13188 PAS domain CDA09_RS14775 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS14775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS14775 PF00989 PAS fold CDA09_RS14780 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS14780 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS14780 PF00563 EAL domain CDA09_RS14785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS14785 PF03466 LysR substrate binding domain CDA09_RS14790 PF00330 Aconitase family (aconitate hydratase) CDA09_RS14795 PF00694 Aconitase C-terminal domain CDA09_RS14800 PF00355 Rieske [2Fe-2S] domain CDA09_RS14805 PF01883 Iron-sulfur cluster assembly protein CDA09_RS14810 PF01592 NifU-like N terminal domain CDA09_RS14815 PF00266 Aminotransferase class-V CDA09_RS14820 PF01458 Uncharacterized protein family (UPF0051) CDA09_RS14825 PF00005 ABC transporter CDA09_RS14830 PF01458 Uncharacterized protein family (UPF0051) CDA09_RS14835 PF13654 AAA domain CDA09_RS14835 PF05362 Lon protease (S16) C-terminal proteolytic domain CDA09_RS14840 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CDA09_RS14840 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CDA09_RS14845 PF01161 Phosphatidylethanolamine-binding protein CDA09_RS14865 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS14870 PF10627 Curli assembly protein CsgE CDA09_RS14875 PF10614 Type VIII secretion system (T8SS), CsgF protein CDA09_RS14880 PF03783 Curli production assembly/transport component CsgG CDA09_RS14895 PF01048 Phosphorylase superfamily CDA09_RS14900 PF00679 Elongation factor G C-terminus CDA09_RS14900 PF00009 Elongation factor Tu GTP binding domain CDA09_RS14900 PF03144 Elongation factor Tu domain 2 CDA09_RS14905 PF00483 Nucleotidyl transferase CDA09_RS14910 PF03120 NAD-dependent DNA ligase OB-fold domain CDA09_RS14910 PF12826 Helix-hairpin-helix motif CDA09_RS14910 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CDA09_RS14910 PF01653 NAD-dependent DNA ligase adenylation domain CDA09_RS14910 PF00533 BRCA1 C Terminus (BRCT) domain CDA09_RS14915 PF04354 ZipA, C-terminal FtsZ-binding domain CDA09_RS14920 PF02463 RecF/RecN/SMC N terminal domain CDA09_RS14925 PF00155 Aminotransferase class I and II CDA09_RS14930 PF14602 Hexapeptide repeat of succinyl-transferase CDA09_RS14930 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_RS14930 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CDA09_RS14935 PF00437 Type II/IV secretion system protein CDA09_RS14940 PF07687 Peptidase dimerisation domain CDA09_RS14940 PF01546 Peptidase family M20/M25/M40 CDA09_RS14945 PF05175 Methyltransferase small domain CDA09_RS14950 PF04384 Iron-sulphur cluster assembly CDA09_RS14955 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS14960 PF00012 Hsp70 protein CDA09_RS14965 PF07743 HSCB C-terminal oligomerisation domain CDA09_RS14970 PF01521 Iron-sulphur cluster biosynthesis CDA09_RS14975 PF01592 NifU-like N terminal domain CDA09_RS14980 PF00266 Aminotransferase class-V CDA09_RS14985 PF00266 Aminotransferase class-V CDA09_RS14990 PF02082 Transcriptional regulator CDA09_RS14995 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_RS15000 PF00588 SpoU rRNA Methylase family CDA09_RS15005 PF00459 Inositol monophosphatase family CDA09_RS15010 PF00271 Helicase conserved C-terminal domain CDA09_RS15010 PF00270 DEAD/DEAH box helicase CDA09_RS15010 PF03880 DbpA RNA binding domain CDA09_RS15050 PF01381 Helix-turn-helix CDA09_RS15050 PF00145 C-5 cytosine-specific DNA methylase CDA09_RS15085 PF01695 IstB-like ATP binding protein CDA09_RS15090 PF00665 Integrase core domain CDA09_RS15110 PF03466 LysR substrate binding domain CDA09_RS15110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS15120 PF02534 Type IV secretory system Conjugative DNA transfer CDA09_RS15130 PF00437 Type II/IV secretion system protein CDA09_RS15135 PF04956 TrbC/VIRB2 family CDA09_RS15145 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CDA09_RS15165 PF03524 Conjugal transfer protein CDA09_RS15170 PF03743 Bacterial conjugation TrbI-like protein CDA09_RS15195 PF01066 CDP-alcohol phosphatidyltransferase CDA09_RS15200 PF08459 UvrC Helix-hairpin-helix N-terminal CDA09_RS15200 PF02151 UvrB/uvrC motif CDA09_RS15200 PF01541 GIY-YIG catalytic domain CDA09_RS15205 PF00933 Glycosyl hydrolase family 3 N terminal domain CDA09_RS15210 PF01648 4'-phosphopantetheinyl transferase superfamily CDA09_RS15215 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CDA09_RS15220 PF11967 Recombination protein O N terminal CDA09_RS15220 PF02565 Recombination protein O C terminal CDA09_RS15225 PF07650 KH domain CDA09_RS15225 PF01926 50S ribosome-binding GTPase CDA09_RS15230 PF00035 Double-stranded RNA binding motif CDA09_RS15230 PF14622 Ribonuclease-III-like CDA09_RS15240 PF10502 Signal peptidase, peptidase S26 CDA09_RS15245 PF03144 Elongation factor Tu domain 2 CDA09_RS15245 PF06421 GTP-binding protein LepA C-terminus CDA09_RS15245 PF00009 Elongation factor Tu GTP binding domain CDA09_RS15245 PF00679 Elongation factor G C-terminus CDA09_RS15255 PF13180 PDZ domain CDA09_RS15275 PF08281 Sigma-70, region 4 CDA09_RS15275 PF04542 Sigma-70 region 2 CDA09_RS15280 PF00890 FAD binding domain CDA09_RS15280 PF02910 Fumarate reductase flavoprotein C-term CDA09_RS15290 PF00109 Beta-ketoacyl synthase, N-terminal domain CDA09_RS15290 PF02801 Beta-ketoacyl synthase, C-terminal domain CDA09_RS15295 PF00550 Phosphopantetheine attachment site CDA09_RS15305 PF00698 Acyl transferase domain CDA09_RS15310 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDA09_RS15310 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDA09_RS15315 PF02504 Fatty acid synthesis protein CDA09_RS15320 PF01783 Ribosomal L32p protein family CDA09_RS15325 PF02620 Large ribosomal RNA subunit accumulation protein YceD CDA09_RS15330 PF02545 Maf-like protein CDA09_RS15335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_RS15340 PF13419 Haloacid dehalogenase-like hydrolase CDA09_RS15345 PF00849 RNA pseudouridylate synthase CDA09_RS15345 PF01479 S4 domain CDA09_RS15350 PF10150 Ribonuclease E/G family CDA09_RS15350 PF00575 S1 RNA binding domain CDA09_RS15350 PF12111 Polyribonucleotide phosphorylase C terminal CDA09_RS15355 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDA09_RS15360 PF00271 Helicase conserved C-terminal domain CDA09_RS15360 PF04851 Type III restriction enzyme, res subunit CDA09_RS15360 PF12344 Ultra-violet resistance protein B CDA09_RS15360 PF02151 UvrB/uvrC motif CDA09_RS15360 PF17757 UvrB interaction domain CDA09_RS15365 PF00155 Aminotransferase class I and II CDA09_RS15380 PF05362 Lon protease (S16) C-terminal proteolytic domain CDA09_RS15380 PF13654 AAA domain CDA09_RS15390 PF04055 Radical SAM superfamily CDA09_RS15390 PF06463 Molybdenum Cofactor Synthesis C CDA09_RS15410 PF01546 Peptidase family M20/M25/M40 CDA09_RS15410 PF07687 Peptidase dimerisation domain CDA09_RS15415 PF00850 Histone deacetylase domain CDA09_RS15425 PF01026 TatD related DNase CDA09_RS15435 PF09115 DNA polymerase III, delta subunit, C terminal CDA09_RS15440 PF02223 Thymidylate kinase CDA09_RS15445 PF02618 YceG-like family CDA09_RS15450 PF01571 Aminomethyltransferase folate-binding domain CDA09_RS15465 PF03734 L,D-transpeptidase catalytic domain CDA09_RS15465 PF17969 L,D-transpeptidase C-terminal domain CDA09_RS15470 PF14437 MafB19-like deaminase CDA09_RS15485 PF00501 AMP-binding enzyme CDA09_RS15485 PF14535 AMP-binding enzyme C-terminal domain CDA09_RS15490 PF13247 4Fe-4S dicluster domain CDA09_RS15490 PF12837 4Fe-4S binding domain CDA09_RS15490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_RS15495 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS15500 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CDA09_RS15500 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CDA09_RS15505 PF00037 4Fe-4S binding domain CDA09_RS15510 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CDA09_RS15520 PF13247 4Fe-4S dicluster domain CDA09_RS15525 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_RS15525 PF01568 Molydopterin dinucleotide binding domain CDA09_RS15525 PF00384 Molybdopterin oxidoreductase CDA09_RS15530 PF02634 FdhD/NarQ family CDA09_RS15535 PF07848 PaaX-like protein CDA09_RS15535 PF08223 PaaX-like protein C-terminal domain CDA09_RS15540 PF07690 Major Facilitator Superfamily CDA09_RS15550 PF00037 4Fe-4S binding domain CDA09_RS15555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_RS15560 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CDA09_RS15560 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CDA09_RS15560 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CDA09_RS15585 PF00171 Aldehyde dehydrogenase family CDA09_RS15590 PF01565 FAD binding domain CDA09_RS15590 PF02913 FAD linked oxidases, C-terminal domain CDA09_RS15605 PF13495 Phage integrase, N-terminal SAM-like domain CDA09_RS15605 PF00589 Phage integrase family CDA09_RS15610 PF13495 Phage integrase, N-terminal SAM-like domain CDA09_RS15610 PF00589 Phage integrase family CDA09_RS15615 PF04986 Putative transposase CDA09_RS15615 PF14319 Transposase zinc-binding domain CDA09_RS15625 PF02371 Transposase IS116/IS110/IS902 family CDA09_RS15625 PF01548 Transposase CDA09_RS15640 PF03992 Antibiotic biosynthesis monooxygenase CDA09_RS15645 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS15650 PF03595 Voltage-dependent anion channel CDA09_RS15660 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CDA09_RS15675 PF00158 Sigma-54 interaction domain CDA09_RS15675 PF00072 Response regulator receiver domain CDA09_RS15680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS15680 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS15680 PF08448 PAS fold CDA09_RS15680 PF13188 PAS domain CDA09_RS15680 PF00072 Response regulator receiver domain CDA09_RS15685 PF07690 Major Facilitator Superfamily CDA09_RS15690 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS15690 PF00501 AMP-binding enzyme CDA09_RS15700 PF02321 Outer membrane efflux protein CDA09_RS15705 PF00873 AcrB/AcrD/AcrF family CDA09_RS15710 PF00529 HlyD membrane-fusion protein of T1SS CDA09_RS15710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_RS15715 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS15715 PF13977 BetI-type transcriptional repressor, C-terminal CDA09_RS15730 PF00034 Cytochrome c CDA09_RS15735 PF01327 Polypeptide deformylase CDA09_RS15745 PF13532 2OG-Fe(II) oxygenase superfamily CDA09_RS15755 PF00216 Bacterial DNA-binding protein CDA09_RS15760 PF02190 ATP-dependent protease La (LON) substrate-binding domain CDA09_RS15760 PF05362 Lon protease (S16) C-terminal proteolytic domain CDA09_RS15760 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_RS15765 PF07724 AAA domain (Cdc48 subfamily) CDA09_RS15765 PF10431 C-terminal, D2-small domain, of ClpB protein CDA09_RS15765 PF06689 ClpX C4-type zinc finger CDA09_RS15770 PF00574 Clp protease CDA09_RS15775 PF05697 Bacterial trigger factor protein (TF) CDA09_RS15775 PF05698 Bacterial trigger factor protein (TF) C-terminus CDA09_RS15775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDA09_RS15780 PF06798 PrkA serine protein kinase C-terminal domain CDA09_RS15780 PF08298 PrkA AAA domain CDA09_RS15785 PF04285 Protein of unknown function (DUF444) CDA09_RS15790 PF04293 SpoVR like protein CDA09_RS15795 PF01256 Carbohydrate kinase CDA09_RS15795 PF03853 YjeF-related protein N-terminus CDA09_RS15800 PF00072 Response regulator receiver domain CDA09_RS15805 PF00892 EamA-like transporter family CDA09_RS15810 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CDA09_RS15810 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CDA09_RS15815 PF14821 Threonine synthase N terminus CDA09_RS15815 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_RS15820 PF03447 Homoserine dehydrogenase, NAD binding domain CDA09_RS15820 PF00742 Homoserine dehydrogenase CDA09_RS15820 PF01842 ACT domain CDA09_RS15825 PF00155 Aminotransferase class I and II CDA09_RS15835 PF00578 AhpC/TSA family CDA09_RS15840 PF02562 PhoH-like protein CDA09_RS15840 PF13638 PIN domain CDA09_RS15855 PF00877 NlpC/P60 family CDA09_RS15860 PF00149 Calcineurin-like phosphoesterase CDA09_RS15870 PF02735 Ku70/Ku80 beta-barrel domain CDA09_RS15875 PF13298 DNA polymerase Ligase (LigD) CDA09_RS15875 PF04679 ATP dependent DNA ligase C terminal region CDA09_RS15875 PF01068 ATP dependent DNA ligase domain CDA09_RS15885 PF11791 Aconitate B N-terminal domain CDA09_RS15885 PF00330 Aconitase family (aconitate hydratase) CDA09_RS15885 PF06434 Aconitate hydratase 2 N-terminus CDA09_RS15890 PF00330 Aconitase family (aconitate hydratase) CDA09_RS15890 PF00694 Aconitase C-terminal domain CDA09_RS15920 PF03692 Putative zinc- or iron-chelating domain CDA09_RS15930 PF02810 SEC-C motif CDA09_RS15930 PF03695 Uncharacterised protein family (UPF0149) CDA09_RS15935 PF02390 Putative methyltransferase CDA09_RS15940 PF01207 Dihydrouridine synthase (Dus) CDA09_RS15945 PF01197 Ribosomal protein L31 CDA09_RS15955 PF00929 Exonuclease CDA09_RS15960 PF16491 CAAX prenyl protease N-terminal, five membrane helices CDA09_RS15960 PF01435 Peptidase family M48 CDA09_RS15965 PF03193 RsgA GTPase CDA09_RS15970 PF02803 Thiolase, C-terminal domain CDA09_RS15970 PF00108 Thiolase, N-terminal domain CDA09_RS15975 PF03186 CobD/Cbib protein CDA09_RS15975 PF17113 Regulatory signalling modulator protein AmpE CDA09_RS15980 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDA09_RS15985 PF00085 Thioredoxin CDA09_RS15990 PF02580 D-Tyr-tRNA(Tyr) deacylase CDA09_RS16000 PF01810 LysE type translocator CDA09_RS16010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDA09_RS16010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDA09_RS16020 PF03466 LysR substrate binding domain CDA09_RS16020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS16025 PF00206 Lyase CDA09_RS16025 PF10415 Fumarase C C-terminus CDA09_RS16040 PF00082 Subtilase family CDA09_RS16040 PF05922 Peptidase inhibitor I9 CDA09_RS16045 PF00664 ABC transporter transmembrane region CDA09_RS16045 PF00005 ABC transporter CDA09_RS16055 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit CDA09_RS16070 PF00171 Aldehyde dehydrogenase family CDA09_RS16085 PF03176 MMPL family CDA09_RS16095 PF07044 Protein of unknown function (DUF1329) CDA09_RS16105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS16105 PF08447 PAS fold CDA09_RS16105 PF13426 PAS domain CDA09_RS16110 PF03928 Haem-degrading CDA09_RS16125 PF01053 Cys/Met metabolism PLP-dependent enzyme CDA09_RS16150 PF00374 Nickel-dependent hydrogenase CDA09_RS16155 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDA09_RS16160 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDA09_RS16165 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDA09_RS16165 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDA09_RS16170 PF03477 ATP cone domain CDA09_RS16170 PF00317 Ribonucleotide reductase, all-alpha domain CDA09_RS16170 PF02867 Ribonucleotide reductase, barrel domain CDA09_RS16175 PF00293 NUDIX domain CDA09_RS16180 PF00361 Proton-conducting membrane transporter CDA09_RS16185 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CDA09_RS16185 PF00361 Proton-conducting membrane transporter CDA09_RS16190 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDA09_RS16190 PF00361 Proton-conducting membrane transporter CDA09_RS16195 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDA09_RS16200 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CDA09_RS16205 PF12838 4Fe-4S dicluster domain CDA09_RS16210 PF00146 NADH dehydrogenase CDA09_RS16215 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CDA09_RS16215 PF00384 Molybdopterin oxidoreductase CDA09_RS16215 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDA09_RS16220 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDA09_RS16220 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDA09_RS16220 PF10531 SLBB domain CDA09_RS16230 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDA09_RS16235 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CDA09_RS16240 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDA09_RS16245 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CDA09_RS16255 PF03840 Preprotein translocase SecG subunit CDA09_RS16260 PF00121 Triosephosphate isomerase CDA09_RS16265 PF00005 ABC transporter CDA09_RS16275 PF12849 PBP superfamily domain CDA09_RS16280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDA09_RS16280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDA09_RS16280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDA09_RS16280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDA09_RS16285 PF00809 Pterin binding enzyme CDA09_RS16290 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_RS16290 PF17862 AAA+ lid domain CDA09_RS16290 PF06480 FtsH Extracellular CDA09_RS16290 PF01434 Peptidase family M41 CDA09_RS16295 PF01728 FtsJ-like methyltransferase CDA09_RS16300 PF01985 CRS1 / YhbY (CRM) domain CDA09_RS16305 PF01272 Transcription elongation factor, GreA/GreB, C-term CDA09_RS16305 PF03449 Transcription elongation factor, N-terminal CDA09_RS16310 PF02142 MGS-like domain CDA09_RS16310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDA09_RS16310 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDA09_RS16315 PF00117 Glutamine amidotransferase class-I CDA09_RS16315 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CDA09_RS16320 PF05173 Dihydrodipicolinate reductase, C-terminus CDA09_RS16320 PF01113 Dihydrodipicolinate reductase, N-terminus CDA09_RS16325 PF04355 SmpA / OmlA family CDA09_RS16330 PF01475 Ferric uptake regulator family CDA09_RS16335 PF02463 RecF/RecN/SMC N terminal domain CDA09_RS16340 PF01513 ATP-NAD kinase CDA09_RS16345 PF01628 HrcA protein C terminal domain CDA09_RS16345 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CDA09_RS16350 PF00762 Ferrochelatase CDA09_RS16360 PF03793 PASTA domain CDA09_RS16360 PF00069 Protein kinase domain CDA09_RS16365 PF01025 GrpE CDA09_RS16370 PF00012 Hsp70 protein CDA09_RS16375 PF00684 DnaJ central domain CDA09_RS16375 PF01556 DnaJ C terminal domain CDA09_RS16375 PF00226 DnaJ domain CDA09_RS16380 PF01406 tRNA synthetases class I (C) catalytic domain CDA09_RS16380 PF09190 DALR domain CDA09_RS16395 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDA09_RS16400 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDA09_RS16405 PF00149 Calcineurin-like phosphoesterase CDA09_RS16410 PF00156 Phosphoribosyl transferase domain CDA09_RS16425 PF02875 Mur ligase family, glutamate ligase domain CDA09_RS16425 PF08245 Mur ligase middle domain CDA09_RS16430 PF01039 Carboxyl transferase domain CDA09_RS16430 PF17848 Acetyl-coA carboxylase zinc finger domain CDA09_RS16435 PF00290 Tryptophan synthase alpha chain CDA09_RS16440 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_RS16445 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDA09_RS16450 PF01416 tRNA pseudouridine synthase CDA09_RS16465 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_RS16465 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDA09_RS16470 PF00180 Isocitrate/isopropylmalate dehydrogenase CDA09_RS16475 PF00694 Aconitase C-terminal domain CDA09_RS16480 PF00330 Aconitase family (aconitate hydratase) CDA09_RS16485 PF01435 Peptidase family M48 CDA09_RS16490 PF12832 MFS_1 like family CDA09_RS16495 PF01264 Chorismate synthase CDA09_RS16500 PF01842 ACT domain CDA09_RS16505 PF00205 Thiamine pyrophosphate enzyme, central domain CDA09_RS16505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDA09_RS16505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_RS16510 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS16510 PF00501 AMP-binding enzyme CDA09_RS16520 PF11953 Domain of unknown function (DUF3470) CDA09_RS16520 PF00037 4Fe-4S binding domain CDA09_RS16525 PF00085 Thioredoxin CDA09_RS16530 PF07497 Rho termination factor, RNA-binding domain CDA09_RS16530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDA09_RS16530 PF07498 Rho termination factor, N-terminal domain CDA09_RS16535 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS16535 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS16570 PF01565 FAD binding domain CDA09_RS16570 PF02913 FAD linked oxidases, C-terminal domain CDA09_RS16575 PF01734 Patatin-like phospholipase CDA09_RS16580 PF18693 TRAM domain CDA09_RS16580 PF04055 Radical SAM superfamily CDA09_RS16580 PF00919 Uncharacterized protein family UPF0004 CDA09_RS16585 PF05233 PHB accumulation regulatory domain CDA09_RS16585 PF07879 PHB/PHA accumulation regulator DNA-binding domain CDA09_RS16590 PF00106 short chain dehydrogenase CDA09_RS16595 PF00106 short chain dehydrogenase CDA09_RS16600 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CDA09_RS16610 PF02578 Multi-copper polyphenol oxidoreductase laccase CDA09_RS16615 PF00849 RNA pseudouridylate synthase CDA09_RS16620 PF13525 Outer membrane lipoprotein CDA09_RS16630 PF13406 Transglycosylase SLT domain CDA09_RS16640 PF01053 Cys/Met metabolism PLP-dependent enzyme CDA09_RS16655 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS16655 PF14759 Reductase C-terminal CDA09_RS16660 PF03358 NADPH-dependent FMN reductase CDA09_RS16665 PF01546 Peptidase family M20/M25/M40 CDA09_RS16665 PF07687 Peptidase dimerisation domain CDA09_RS16670 PF03458 UPF0126 domain CDA09_RS16675 PF07690 Major Facilitator Superfamily CDA09_RS16690 PF02508 Rnf-Nqr subunit, membrane protein CDA09_RS16695 PF04060 Putative Fe-S cluster CDA09_RS16700 PF13237 4Fe-4S dicluster domain CDA09_RS16700 PF13375 RnfC Barrel sandwich hybrid domain CDA09_RS16700 PF10531 SLBB domain CDA09_RS16700 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDA09_RS16705 PF03116 NQR2, RnfD, RnfE family CDA09_RS16710 PF04205 FMN-binding domain CDA09_RS16715 PF02508 Rnf-Nqr subunit, membrane protein CDA09_RS16720 PF03658 RnfH family Ubiquitin CDA09_RS16740 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDA09_RS16740 PF01464 Transglycosylase SLT domain CDA09_RS16745 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDA09_RS16745 PF02403 Seryl-tRNA synthetase N-terminal domain CDA09_RS16755 PF12002 MgsA AAA+ ATPase C terminal CDA09_RS16755 PF16193 AAA C-terminal domain CDA09_RS16755 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_RS16760 PF03548 Outer membrane lipoprotein carrier protein LolA CDA09_RS16765 PF17854 FtsK alpha domain CDA09_RS16765 PF09397 Ftsk gamma domain CDA09_RS16765 PF01580 FtsK/SpoIIIE family CDA09_RS16765 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CDA09_RS16770 PF13545 Crp-like helix-turn-helix domain CDA09_RS16770 PF00027 Cyclic nucleotide-binding domain CDA09_RS16775 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS16780 PF01713 Smr domain CDA09_RS16785 PF00543 Nitrogen regulatory protein P-II CDA09_RS16790 PF00795 Carbon-nitrogen hydrolase CDA09_RS16790 PF02540 NAD synthase CDA09_RS16800 PF00719 Inorganic pyrophosphatase CDA09_RS16810 PF00403 Heavy-metal-associated domain CDA09_RS16815 PF09278 MerR, DNA binding CDA09_RS16815 PF00376 MerR family regulatory protein CDA09_RS16825 PF06969 HemN C-terminal domain CDA09_RS16825 PF04055 Radical SAM superfamily CDA09_RS16830 PF13545 Crp-like helix-turn-helix domain CDA09_RS16830 PF00027 Cyclic nucleotide-binding domain CDA09_RS16840 PF04247 Invasion gene expression up-regulator, SirB CDA09_RS16850 PF00520 Ion transport protein CDA09_RS16850 PF00027 Cyclic nucleotide-binding domain CDA09_RS16855 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CDA09_RS16855 PF00561 alpha/beta hydrolase fold CDA09_RS16860 PF10996 Beta-Casp domain CDA09_RS16860 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CDA09_RS16860 PF00753 Metallo-beta-lactamase superfamily CDA09_RS16880 PF12801 4Fe-4S binding domain CDA09_RS16880 PF13746 4Fe-4S dicluster domain CDA09_RS16880 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CDA09_RS16885 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CDA09_RS16885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS16900 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDA09_RS16910 PF00403 Heavy-metal-associated domain CDA09_RS16915 PF00106 short chain dehydrogenase CDA09_RS16920 PF00293 NUDIX domain CDA09_RS16930 PF06580 Histidine kinase CDA09_RS16930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS16935 PF07963 Prokaryotic N-terminal methylation motif CDA09_RS16935 PF00114 Pilin (bacterial filament) CDA09_RS16965 PF14245 Type IV pilin PilA CDA09_RS16965 PF07963 Prokaryotic N-terminal methylation motif CDA09_RS16970 PF00300 Histidine phosphatase superfamily (branch 1) CDA09_RS16985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS16985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS16985 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS16990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS16990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS16995 PF02803 Thiolase, C-terminal domain CDA09_RS16995 PF00108 Thiolase, N-terminal domain CDA09_RS17000 PF00106 short chain dehydrogenase CDA09_RS17010 PF00108 Thiolase, N-terminal domain CDA09_RS17010 PF02803 Thiolase, C-terminal domain CDA09_RS17025 PF07690 Major Facilitator Superfamily CDA09_RS17040 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS17040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS17040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS17045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS17045 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS17045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS17060 PF16884 N-terminal domain of oxidoreductase CDA09_RS17060 PF00107 Zinc-binding dehydrogenase CDA09_RS17065 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS17065 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS17065 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS17070 PF00108 Thiolase, N-terminal domain CDA09_RS17070 PF02803 Thiolase, C-terminal domain CDA09_RS17075 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS17090 PF00501 AMP-binding enzyme CDA09_RS17090 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS17110 PF07690 Major Facilitator Superfamily CDA09_RS17115 PF00890 FAD binding domain CDA09_RS17115 PF14537 Cytochrome c3 CDA09_RS17120 PF00582 Universal stress protein family CDA09_RS17135 PF07044 Protein of unknown function (DUF1329) CDA09_RS17155 PF00106 short chain dehydrogenase CDA09_RS17160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS17160 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS17170 PF07690 Major Facilitator Superfamily CDA09_RS17175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS17175 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS17175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS17180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS17180 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS17180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS17185 PF05598 Transposase domain (DUF772) CDA09_RS17185 PF01609 Transposase DDE domain CDA09_RS17215 PF13840 ACT domain CDA09_RS17215 PF00696 Amino acid kinase family CDA09_RS17215 PF01842 ACT domain CDA09_RS17230 PF01242 6-pyruvoyl tetrahydropterin synthase CDA09_RS17235 PF00924 Mechanosensitive ion channel CDA09_RS17235 PF12795 Mechanosensitive ion channel porin domain CDA09_RS17235 PF12794 Mechanosensitive ion channel inner membrane domain 1 CDA09_RS17240 PF13091 PLD-like domain CDA09_RS17245 PF01029 NusB family CDA09_RS17245 PF01189 16S rRNA methyltransferase RsmB/F CDA09_RS17255 PF00551 Formyl transferase CDA09_RS17260 PF01119 DNA mismatch repair protein, C-terminal domain CDA09_RS17260 PF08676 MutL C terminal dimerisation domain CDA09_RS17290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS17290 PF00986 DNA gyrase B subunit, carboxyl terminus CDA09_RS17290 PF01751 Toprim domain CDA09_RS17290 PF00204 DNA gyrase B CDA09_RS17300 PF03746 LamB/YcsF family CDA09_RS17305 PF02626 Carboxyltransferase domain, subdomain A and B CDA09_RS17310 PF02682 Carboxyltransferase domain, subdomain C and D CDA09_RS17315 PF07690 Major Facilitator Superfamily CDA09_RS17320 PF07286 Protein of unknown function (DUF1445) CDA09_RS17330 PF00521 DNA gyrase/topoisomerase IV, subunit A CDA09_RS17335 PF13677 Membrane MotB of proton-channel complex MotA/MotB CDA09_RS17335 PF00691 OmpA family CDA09_RS17340 PF01618 MotA/TolQ/ExbB proton channel family CDA09_RS17345 PF04539 Sigma-70 region 3 CDA09_RS17345 PF04542 Sigma-70 region 2 CDA09_RS17345 PF04545 Sigma-70, region 4 CDA09_RS17355 PF00448 SRP54-type protein, GTPase domain CDA09_RS17360 PF00771 FHIPEP family CDA09_RS17365 PF01312 FlhB HrpN YscU SpaS Family CDA09_RS17385 PF05958 tRNA (Uracil-5-)-methyltransferase CDA09_RS17400 PF06804 NlpB/DapX lipoprotein CDA09_RS17405 PF00701 Dihydrodipicolinate synthetase family CDA09_RS17410 PF00850 Histone deacetylase domain CDA09_RS17415 PF07726 ATPase family associated with various cellular activities (AAA) CDA09_RS17415 PF17863 AAA lid domain CDA09_RS17425 PF01841 Transglutaminase-like superfamily CDA09_RS17425 PF11992 Domain of unknown function (DUF3488) CDA09_RS17425 PF13559 Domain of unknown function (DUF4129) CDA09_RS17430 PF13406 Transglycosylase SLT domain CDA09_RS17435 PF04542 Sigma-70 region 2 CDA09_RS17435 PF04539 Sigma-70 region 3 CDA09_RS17435 PF04545 Sigma-70, region 4 CDA09_RS17435 PF00140 Sigma-70 factor, region 1.2 CDA09_RS17440 PF01476 LysM domain CDA09_RS17440 PF01551 Peptidase family M23 CDA09_RS17450 PF01975 Survival protein SurE CDA09_RS17465 PF00216 Bacterial DNA-binding protein CDA09_RS17470 PF03147 Ferredoxin-fold anticodon binding domain CDA09_RS17470 PF03483 B3/4 domain CDA09_RS17470 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CDA09_RS17470 PF01588 Putative tRNA binding domain CDA09_RS17470 PF03484 tRNA synthetase B5 domain CDA09_RS17475 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CDA09_RS17475 PF01409 tRNA synthetases class II core domain (F) CDA09_RS17480 PF00453 Ribosomal protein L20 CDA09_RS17485 PF01632 Ribosomal protein L35 CDA09_RS17490 PF05198 Translation initiation factor IF-3, N-terminal domain CDA09_RS17490 PF00707 Translation initiation factor IF-3, C-terminal domain CDA09_RS17495 PF02824 TGS domain CDA09_RS17495 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDA09_RS17495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDA09_RS17495 PF03129 Anticodon binding domain CDA09_RS17510 PF13186 Iron-sulfur cluster-binding domain CDA09_RS17510 PF04055 Radical SAM superfamily CDA09_RS17515 PF17805 AsnC-like ligand binding domain CDA09_RS17520 PF13404 AsnC-type helix-turn-helix domain CDA09_RS17520 PF17805 AsnC-like ligand binding domain CDA09_RS17525 PF17805 AsnC-like ligand binding domain CDA09_RS17535 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS17540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_RS17540 PF10414 Sirohaem synthase dimerisation region CDA09_RS17540 PF14824 Sirohaem biosynthesis protein central CDA09_RS17545 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS17555 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_RS17560 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDA09_RS17560 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDA09_RS17560 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDA09_RS17565 PF18073 Rubredoxin metal binding domain CDA09_RS17575 PF00216 Bacterial DNA-binding protein CDA09_RS17580 PF00575 S1 RNA binding domain CDA09_RS17585 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDA09_RS17590 PF02153 Prephenate dehydrogenase CDA09_RS17590 PF01842 ACT domain CDA09_RS17595 PF00800 Prephenate dehydratase CDA09_RS17595 PF01817 Chorismate mutase type II CDA09_RS17595 PF01842 ACT domain CDA09_RS17600 PF00266 Aminotransferase class-V CDA09_RS17605 PF03989 DNA gyrase C-terminal domain, beta-propeller CDA09_RS17605 PF00521 DNA gyrase/topoisomerase IV, subunit A CDA09_RS17610 PF01979 Amidohydrolase family CDA09_RS17615 PF00691 OmpA family CDA09_RS17650 PF14331 ImcF-related N-terminal domain CDA09_RS17650 PF06744 Type VI secretion protein IcmF C-terminal CDA09_RS17650 PF06761 Intracellular multiplication and human macrophage-killing CDA09_RS17670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_RS17690 PF00448 SRP54-type protein, GTPase domain CDA09_RS17690 PF02881 SRP54-type protein, helical bundle domain CDA09_RS17690 PF02978 Signal peptide binding domain CDA09_RS17700 PF00437 Type II/IV secretion system protein CDA09_RS17700 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDA09_RS17705 PF00482 Type II secretion system (T2SS), protein F CDA09_RS17710 PF06750 Bacterial Peptidase A24 N-terminal domain CDA09_RS17710 PF01478 Type IV leader peptidase family CDA09_RS17725 PF00152 tRNA synthetases class II (D, K and N) CDA09_RS17725 PF01336 OB-fold nucleic acid binding domain CDA09_RS17725 PF02938 GAD domain CDA09_RS17735 PF00545 ribonuclease CDA09_RS17745 PF00293 NUDIX domain CDA09_RS17750 PF00011 Hsp20/alpha crystallin family CDA09_RS17755 PF00696 Amino acid kinase family CDA09_RS17760 PF00459 Inositol monophosphatase family CDA09_RS17765 PF00550 Phosphopantetheine attachment site CDA09_RS17770 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS17770 PF00501 AMP-binding enzyme CDA09_RS17775 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDA09_RS17775 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDA09_RS17780 PF13609 Gram-negative porin CDA09_RS17785 PF13609 Gram-negative porin CDA09_RS17790 PF00140 Sigma-70 factor, region 1.2 CDA09_RS17790 PF04542 Sigma-70 region 2 CDA09_RS17790 PF04545 Sigma-70, region 4 CDA09_RS17795 PF02630 SCO1/SenC CDA09_RS17800 PF01040 UbiA prenyltransferase family CDA09_RS17820 PF00510 Cytochrome c oxidase subunit III CDA09_RS17830 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CDA09_RS17835 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDA09_RS17840 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CDA09_RS17840 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDA09_RS17845 PF01467 Cytidylyltransferase-like CDA09_RS17850 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS17850 PF00563 EAL domain CDA09_RS17850 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS17860 PF09382 RQC domain CDA09_RS17860 PF16124 RecQ zinc-binding CDA09_RS17860 PF00570 HRDC domain CDA09_RS17860 PF00270 DEAD/DEAH box helicase CDA09_RS17860 PF00271 Helicase conserved C-terminal domain CDA09_RS17865 PF00563 EAL domain CDA09_RS17865 PF08668 HDOD domain CDA09_RS17870 PF01545 Cation efflux family CDA09_RS17870 PF16916 Dimerisation domain of Zinc Transporter CDA09_RS17880 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDA09_RS17880 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDA09_RS17890 PF00975 Thioesterase domain CDA09_RS17890 PF00550 Phosphopantetheine attachment site CDA09_RS17890 PF00668 Condensation domain CDA09_RS17890 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS17890 PF00501 AMP-binding enzyme CDA09_RS17905 PF02311 AraC-like ligand binding domain CDA09_RS17905 PF12833 Helix-turn-helix domain CDA09_RS17910 PF00012 Hsp70 protein CDA09_RS17915 PF13458 Periplasmic binding protein CDA09_RS17920 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS17925 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS17925 PF11862 Domain of unknown function (DUF3382) CDA09_RS17930 PF00005 ABC transporter CDA09_RS17930 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS17935 PF00005 ABC transporter CDA09_RS17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS17950 PF07194 P2 response regulator binding domain CDA09_RS17950 PF02895 Signal transducing histidine kinase, homodimeric domain CDA09_RS17950 PF01627 Hpt domain CDA09_RS17950 PF01584 CheW-like domain CDA09_RS17955 PF00072 Response regulator receiver domain CDA09_RS17965 PF01037 Lrp/AsnC ligand binding domain CDA09_RS17970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDA09_RS17975 PF01625 Peptide methionine sulfoxide reductase CDA09_RS17980 PF04357 TamB, inner membrane protein subunit of TAM complex CDA09_RS17985 PF00218 Indole-3-glycerol phosphate synthase CDA09_RS17990 PF02885 Glycosyl transferase family, helical bundle domain CDA09_RS17990 PF00591 Glycosyl transferase family, a/b domain CDA09_RS17995 PF00117 Glutamine amidotransferase class-I CDA09_RS18000 PF00425 chorismate binding enzyme CDA09_RS18000 PF04715 Anthranilate synthase component I, N terminal region CDA09_RS18005 PF13419 Haloacid dehalogenase-like hydrolase CDA09_RS18010 PF00834 Ribulose-phosphate 3 epimerase family CDA09_RS18015 PF00437 Type II/IV secretion system protein CDA09_RS18015 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDA09_RS18020 PF12706 Beta-lactamase superfamily domain CDA09_RS18020 PF00753 Metallo-beta-lactamase superfamily CDA09_RS18025 PF00498 FHA domain CDA09_RS18035 PF02423 Ornithine cyclodeaminase/mu-crystallin family CDA09_RS18040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDA09_RS18045 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CDA09_RS18050 PF03480 Bacterial extracellular solute-binding protein, family 7 CDA09_RS18055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS18055 PF00989 PAS fold CDA09_RS18055 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS18060 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS18060 PF00072 Response regulator receiver domain CDA09_RS18065 PF01479 S4 domain CDA09_RS18070 PF09179 TilS substrate binding domain CDA09_RS18070 PF11734 TilS substrate C-terminal domain CDA09_RS18070 PF01171 PP-loop family CDA09_RS18075 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CDA09_RS18080 PF01595 Cyclin M transmembrane N-terminal domain CDA09_RS18080 PF03471 Transporter associated domain CDA09_RS18080 PF00571 CBS domain CDA09_RS18085 PF00689 Cation transporting ATPase, C-terminus CDA09_RS18085 PF00690 Cation transporter/ATPase, N-terminus CDA09_RS18090 PF01027 Inhibitor of apoptosis-promoting Bax1 CDA09_RS18105 PF02547 Queuosine biosynthesis protein CDA09_RS18110 PF01702 Queuine tRNA-ribosyltransferase CDA09_RS18115 PF02699 Preprotein translocase subunit CDA09_RS18120 PF07549 SecD/SecF GG Motif CDA09_RS18120 PF02355 Protein export membrane protein CDA09_RS18120 PF13721 SecD export protein N-terminal TM region CDA09_RS18125 PF02355 Protein export membrane protein CDA09_RS18125 PF07549 SecD/SecF GG Motif CDA09_RS18130 PF01914 MarC family integral membrane protein CDA09_RS18140 PF00206 Lyase CDA09_RS18140 PF08328 Adenylosuccinate lyase C-terminal CDA09_RS18145 PF04379 ApaG domain CDA09_RS18150 PF13426 PAS domain CDA09_RS18150 PF00072 Response regulator receiver domain CDA09_RS18150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS18155 PF01960 ArgJ family CDA09_RS18165 PF07517 SecA DEAD-like domain CDA09_RS18165 PF07516 SecA Wing and Scaffold domain CDA09_RS18165 PF02810 SEC-C motif CDA09_RS18165 PF01043 SecA preprotein cross-linking domain CDA09_RS18180 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CDA09_RS18185 PF00091 Tubulin/FtsZ family, GTPase domain CDA09_RS18185 PF12327 FtsZ family, C-terminal domain CDA09_RS18190 PF02491 SHS2 domain inserted in FTSA CDA09_RS18195 PF08478 POTRA domain, FtsQ-type CDA09_RS18195 PF03799 Cell division protein FtsQ CDA09_RS18200 PF07478 D-ala D-ala ligase C-terminus CDA09_RS18200 PF01820 D-ala D-ala ligase N-terminus CDA09_RS18205 PF02875 Mur ligase family, glutamate ligase domain CDA09_RS18205 PF01225 Mur ligase family, catalytic domain CDA09_RS18205 PF08245 Mur ligase middle domain CDA09_RS18210 PF04101 Glycosyltransferase family 28 C-terminal domain CDA09_RS18210 PF03033 Glycosyltransferase family 28 N-terminal domain CDA09_RS18215 PF01098 Cell cycle protein CDA09_RS18220 PF08245 Mur ligase middle domain CDA09_RS18225 PF00953 Glycosyl transferase family 4 CDA09_RS18225 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CDA09_RS18230 PF08245 Mur ligase middle domain CDA09_RS18230 PF02875 Mur ligase family, glutamate ligase domain CDA09_RS18230 PF01225 Mur ligase family, catalytic domain CDA09_RS18235 PF01225 Mur ligase family, catalytic domain CDA09_RS18235 PF08245 Mur ligase middle domain CDA09_RS18235 PF02875 Mur ligase family, glutamate ligase domain CDA09_RS18240 PF03717 Penicillin-binding Protein dimerisation domain CDA09_RS18240 PF00905 Penicillin binding protein transpeptidase domain CDA09_RS18250 PF01795 MraW methylase family CDA09_RS18255 PF02381 MraZ protein, putative antitoxin-like CDA09_RS18270 PF01979 Amidohydrolase family CDA09_RS18275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_RS18280 PF02021 Uncharacterised protein family UPF0102 CDA09_RS18285 PF13580 SIS domain CDA09_RS18290 PF04972 BON domain CDA09_RS18295 PF08245 Mur ligase middle domain CDA09_RS18295 PF02875 Mur ligase family, glutamate ligase domain CDA09_RS18295 PF01225 Mur ligase family, catalytic domain CDA09_RS18305 PF00578 AhpC/TSA family CDA09_RS18310 PF01220 Dehydroquinase class II CDA09_RS18315 PF00364 Biotin-requiring enzyme CDA09_RS18320 PF00289 Biotin carboxylase, N-terminal domain CDA09_RS18320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDA09_RS18320 PF02785 Biotin carboxylase C-terminal domain CDA09_RS18335 PF01219 Prokaryotic diacylglycerol kinase CDA09_RS18340 PF05433 Glycine zipper 2TM domain CDA09_RS18345 PF00294 pfkB family carbohydrate kinase CDA09_RS18350 PF01230 HIT domain CDA09_RS18365 PF00149 Calcineurin-like phosphoesterase CDA09_RS18370 PF02719 Polysaccharide biosynthesis protein CDA09_RS18375 PF00953 Glycosyl transferase family 4 CDA09_RS18380 PF01370 NAD dependent epimerase/dehydratase family CDA09_RS18405 PF01943 Polysaccharide biosynthesis protein CDA09_RS18405 PF14667 Polysaccharide biosynthesis C-terminal domain CDA09_RS18410 PF00534 Glycosyl transferases group 1 CDA09_RS18410 PF13439 Glycosyltransferase Family 4 CDA09_RS18420 PF16363 GDP-mannose 4,6 dehydratase CDA09_RS18425 PF16363 GDP-mannose 4,6 dehydratase CDA09_RS18430 PF00893 Small Multidrug Resistance protein CDA09_RS18445 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDA09_RS18450 PF00483 Nucleotidyl transferase CDA09_RS18455 PF16363 GDP-mannose 4,6 dehydratase CDA09_RS18470 PF08241 Methyltransferase domain CDA09_RS18475 PF14524 Wzt C-terminal domain CDA09_RS18475 PF00005 ABC transporter CDA09_RS18485 PF00483 Nucleotidyl transferase CDA09_RS18485 PF01050 Mannose-6-phosphate isomerase CDA09_RS18490 PF01370 NAD dependent epimerase/dehydratase family CDA09_RS18495 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CDA09_RS18495 PF00534 Glycosyl transferases group 1 CDA09_RS18510 PF02321 Outer membrane efflux protein CDA09_RS18515 PF00581 Rhodanese-like domain CDA09_RS18525 PF00873 AcrB/AcrD/AcrF family CDA09_RS18535 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS18535 PF16295 Tetracyclin repressor-like, C-terminal domain CDA09_RS18545 PF01169 Uncharacterized protein family UPF0016 CDA09_RS18550 PF08543 Phosphomethylpyrimidine kinase CDA09_RS18555 PF01964 Radical SAM ThiC family CDA09_RS18555 PF13667 ThiC-associated domain CDA09_RS18570 PF05690 Thiazole biosynthesis protein ThiG CDA09_RS18575 PF05690 Thiazole biosynthesis protein ThiG CDA09_RS18575 PF02597 ThiS family CDA09_RS18580 PF04055 Radical SAM superfamily CDA09_RS18585 PF00561 alpha/beta hydrolase fold CDA09_RS18585 PF00364 Biotin-requiring enzyme CDA09_RS18590 PF02780 Transketolase, C-terminal domain CDA09_RS18590 PF02779 Transketolase, pyrimidine binding domain CDA09_RS18595 PF00676 Dehydrogenase E1 component CDA09_RS18615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS18615 PF03466 LysR substrate binding domain CDA09_RS18620 PF00501 AMP-binding enzyme CDA09_RS18620 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS18645 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDA09_RS18645 PF13360 PQQ-like domain CDA09_RS18660 PF03692 Putative zinc- or iron-chelating domain CDA09_RS18665 PF02673 Bacitracin resistance protein BacA CDA09_RS18670 PF05728 Uncharacterised protein family (UPF0227) CDA09_RS18675 PF01209 ubiE/COQ5 methyltransferase family CDA09_RS18680 PF00892 EamA-like transporter family CDA09_RS18685 PF00773 RNB domain CDA09_RS18695 PF08501 Shikimate dehydrogenase substrate binding domain CDA09_RS18695 PF01488 Shikimate / quinate 5-dehydrogenase CDA09_RS18695 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CDA09_RS18700 PF00912 Transglycosylase CDA09_RS18705 PF00571 CBS domain CDA09_RS18705 PF01769 Divalent cation transporter CDA09_RS18705 PF03448 MgtE intracellular N domain CDA09_RS18710 PF00202 Aminotransferase class-III CDA09_RS18715 PF02581 Thiamine monophosphate synthase CDA09_RS18720 PF08543 Phosphomethylpyrimidine kinase CDA09_RS18725 PF00072 Response regulator receiver domain CDA09_RS18730 PF00072 Response regulator receiver domain CDA09_RS18740 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDA09_RS18740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS18745 PF09078 CheY binding CDA09_RS18745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS18745 PF01627 Hpt domain CDA09_RS18745 PF01584 CheW-like domain CDA09_RS18745 PF02895 Signal transducing histidine kinase, homodimeric domain CDA09_RS18755 PF02622 Uncharacterized ACR, COG1678 CDA09_RS18760 PF03652 Holliday junction resolvase CDA09_RS18765 PF00156 Phosphoribosyl transferase domain CDA09_RS18770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDA09_RS18770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDA09_RS18775 PF01979 Amidohydrolase family CDA09_RS18780 PF02594 Uncharacterised ACR, YggU family COG1872 CDA09_RS18785 PF02325 YGGT family CDA09_RS18790 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDA09_RS18790 PF03807 NADP oxidoreductase coenzyme F420-dependent CDA09_RS18795 PF01168 Alanine racemase, N-terminal domain CDA09_RS18800 PF00437 Type II/IV secretion system protein CDA09_RS18805 PF00437 Type II/IV secretion system protein CDA09_RS18810 PF02926 THUMP domain CDA09_RS18810 PF01170 Putative RNA methylase family UPF0020 CDA09_RS18815 PF03653 Uncharacterised protein family (UPF0093) CDA09_RS18825 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS18825 PF00970 Oxidoreductase FAD-binding domain CDA09_RS18825 PF00175 Oxidoreductase NAD-binding domain CDA09_RS18830 PF08668 HDOD domain CDA09_RS18830 PF00563 EAL domain CDA09_RS18835 PF00034 Cytochrome c CDA09_RS18840 PF14489 QueF-like protein CDA09_RS18840 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CDA09_RS18845 PF02321 Outer membrane efflux protein CDA09_RS18855 PF00563 EAL domain CDA09_RS18855 PF12792 CSS motif domain associated with EAL CDA09_RS18865 PF00072 Response regulator receiver domain CDA09_RS18865 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS18870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_RS18870 PF00529 HlyD membrane-fusion protein of T1SS CDA09_RS18875 PF00664 ABC transporter transmembrane region CDA09_RS18875 PF03412 Peptidase C39 family CDA09_RS18875 PF00005 ABC transporter CDA09_RS18880 PF01475 Ferric uptake regulator family CDA09_RS18885 PF00005 ABC transporter CDA09_RS18890 PF00950 ABC 3 transport family CDA09_RS18895 PF01297 Zinc-uptake complex component A periplasmic CDA09_RS18900 PF01810 LysE type translocator CDA09_RS18910 PF05164 Cell division protein ZapA CDA09_RS18920 PF00920 Dehydratase family CDA09_RS18925 PF04337 Protein of unknown function, DUF480 CDA09_RS18930 PF01790 Prolipoprotein diacylglyceryl transferase CDA09_RS18940 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS18940 PF00563 EAL domain CDA09_RS18940 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS18955 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_RS18970 PF00210 Ferritin-like domain CDA09_RS18980 PF01618 MotA/TolQ/ExbB proton channel family CDA09_RS18985 PF02472 Biopolymer transport protein ExbD/TolR CDA09_RS18990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_RS18995 PF00005 ABC transporter CDA09_RS18995 PF02687 FtsX-like permease family CDA09_RS18995 PF12704 MacB-like periplasmic core domain CDA09_RS19000 PF02321 Outer membrane efflux protein CDA09_RS19005 PF10634 Fe2+ transport protein CDA09_RS19020 PF03239 Iron permease FTR1 family CDA09_RS19030 PF01799 [2Fe-2S] binding domain CDA09_RS19030 PF00111 2Fe-2S iron-sulfur cluster binding domain CDA09_RS19035 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDA09_RS19040 PF07715 TonB-dependent Receptor Plug Domain CDA09_RS19040 PF00593 TonB dependent receptor CDA09_RS19070 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS19070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS19070 PF00672 HAMP domain CDA09_RS19075 PF00072 Response regulator receiver domain CDA09_RS19075 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS19100 PF00873 AcrB/AcrD/AcrF family CDA09_RS19170 PF07963 Prokaryotic N-terminal methylation motif CDA09_RS19170 PF00114 Pilin (bacterial filament) CDA09_RS19185 PF00158 Sigma-54 interaction domain CDA09_RS19185 PF00072 Response regulator receiver domain CDA09_RS19185 PF02954 Bacterial regulatory protein, Fis family CDA09_RS19190 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CDA09_RS19235 PF00072 Response regulator receiver domain CDA09_RS19235 PF02954 Bacterial regulatory protein, Fis family CDA09_RS19235 PF00158 Sigma-54 interaction domain CDA09_RS19240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS19240 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS19250 PF00155 Aminotransferase class I and II CDA09_RS19255 PF01008 Initiation factor 2 subunit family CDA09_RS19260 PF00596 Class II Aldolase and Adducin N-terminal domain CDA09_RS19265 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDA09_RS19265 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDA09_RS19270 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDA09_RS19270 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDA09_RS19275 PF02885 Glycosyl transferase family, helical bundle domain CDA09_RS19280 PF05726 Pirin C-terminal cupin domain CDA09_RS19280 PF02678 Pirin CDA09_RS19285 PF02525 Flavodoxin-like fold CDA09_RS19290 PF02600 Disulfide bond formation protein DsbB CDA09_RS19305 PF00873 AcrB/AcrD/AcrF family CDA09_RS19320 PF00899 ThiF family CDA09_RS19330 PF00753 Metallo-beta-lactamase superfamily CDA09_RS19335 PF00155 Aminotransferase class I and II CDA09_RS19340 PF02954 Bacterial regulatory protein, Fis family CDA09_RS19340 PF00158 Sigma-54 interaction domain CDA09_RS19340 PF13426 PAS domain CDA09_RS19345 PF01144 Coenzyme A transferase CDA09_RS19350 PF01144 Coenzyme A transferase CDA09_RS19355 PF16177 Acetyl-coenzyme A synthetase N-terminus CDA09_RS19355 PF00501 AMP-binding enzyme CDA09_RS19355 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS19380 PF08882 Acetone carboxylase gamma subunit CDA09_RS19385 PF02538 Hydantoinase B/oxoprolinase CDA09_RS19390 PF01968 Hydantoinase/oxoprolinase CDA09_RS19390 PF05378 Hydantoinase/oxoprolinase N-terminal region CDA09_RS19395 PF00436 Single-strand binding protein family CDA09_RS19400 PF07690 Major Facilitator Superfamily CDA09_RS19405 PF17760 UvrA interaction domain CDA09_RS19405 PF17755 UvrA DNA-binding domain CDA09_RS19415 PF01196 Ribosomal protein L17 CDA09_RS19420 PF01000 RNA polymerase Rpb3/RpoA insert domain CDA09_RS19420 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CDA09_RS19420 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CDA09_RS19425 PF01479 S4 domain CDA09_RS19425 PF00163 Ribosomal protein S4/S9 N-terminal domain CDA09_RS19430 PF00411 Ribosomal protein S11 CDA09_RS19435 PF00416 Ribosomal protein S13/S18 CDA09_RS19440 PF00444 Ribosomal protein L36 CDA09_RS19445 PF01176 Translation initiation factor 1A / IF-1 CDA09_RS19450 PF00344 SecY translocase CDA09_RS19455 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CDA09_RS19460 PF00327 Ribosomal protein L30p/L7e CDA09_RS19465 PF00333 Ribosomal protein S5, N-terminal domain CDA09_RS19465 PF03719 Ribosomal protein S5, C-terminal domain CDA09_RS19470 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CDA09_RS19475 PF00347 Ribosomal protein L6 CDA09_RS19480 PF00410 Ribosomal protein S8 CDA09_RS19485 PF00253 Ribosomal protein S14p/S29e CDA09_RS19490 PF00673 ribosomal L5P family C-terminus CDA09_RS19490 PF00281 Ribosomal protein L5 CDA09_RS19495 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CDA09_RS19500 PF00238 Ribosomal protein L14p/L23e CDA09_RS19505 PF00366 Ribosomal protein S17 CDA09_RS19510 PF00831 Ribosomal L29 protein CDA09_RS19515 PF00252 Ribosomal protein L16p/L10e CDA09_RS19520 PF00189 Ribosomal protein S3, C-terminal domain CDA09_RS19520 PF07650 KH domain CDA09_RS19525 PF00237 Ribosomal protein L22p/L17e CDA09_RS19530 PF00203 Ribosomal protein S19 CDA09_RS19535 PF03947 Ribosomal Proteins L2, C-terminal domain CDA09_RS19535 PF00181 Ribosomal Proteins L2, RNA binding domain CDA09_RS19540 PF00276 Ribosomal protein L23 CDA09_RS19545 PF00573 Ribosomal protein L4/L1 family CDA09_RS19550 PF00297 Ribosomal protein L3 CDA09_RS19555 PF00338 Ribosomal protein S10p/S20e CDA09_RS19560 PF00009 Elongation factor Tu GTP binding domain CDA09_RS19560 PF03144 Elongation factor Tu domain 2 CDA09_RS19560 PF03143 Elongation factor Tu C-terminal domain CDA09_RS19565 PF14492 Elongation Factor G, domain II CDA09_RS19565 PF00679 Elongation factor G C-terminus CDA09_RS19565 PF00009 Elongation factor Tu GTP binding domain CDA09_RS19565 PF03764 Elongation factor G, domain IV CDA09_RS19565 PF03144 Elongation factor Tu domain 2 CDA09_RS19570 PF00177 Ribosomal protein S7p/S5e CDA09_RS19575 PF00164 Ribosomal protein S12/S23 CDA09_RS19580 PF05000 RNA polymerase Rpb1, domain 4 CDA09_RS19580 PF04983 RNA polymerase Rpb1, domain 3 CDA09_RS19580 PF00623 RNA polymerase Rpb1, domain 2 CDA09_RS19580 PF04997 RNA polymerase Rpb1, domain 1 CDA09_RS19580 PF04998 RNA polymerase Rpb1, domain 5 CDA09_RS19585 PF04563 RNA polymerase beta subunit CDA09_RS19585 PF04565 RNA polymerase Rpb2, domain 3 CDA09_RS19585 PF10385 RNA polymerase beta subunit external 1 domain CDA09_RS19585 PF00562 RNA polymerase Rpb2, domain 6 CDA09_RS19585 PF04560 RNA polymerase Rpb2, domain 7 CDA09_RS19585 PF04561 RNA polymerase Rpb2, domain 2 CDA09_RS19590 PF16320 Ribosomal protein L7/L12 dimerisation domain CDA09_RS19590 PF00542 Ribosomal protein L7/L12 C-terminal domain CDA09_RS19595 PF00466 Ribosomal protein L10 CDA09_RS19600 PF00687 Ribosomal protein L1p/L10e family CDA09_RS19605 PF00298 Ribosomal protein L11, RNA binding domain CDA09_RS19605 PF03946 Ribosomal protein L11, N-terminal domain CDA09_RS19610 PF00467 KOW motif CDA09_RS19610 PF02357 Transcription termination factor nusG CDA09_RS19615 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CDA09_RS19625 PF00009 Elongation factor Tu GTP binding domain CDA09_RS19625 PF03144 Elongation factor Tu domain 2 CDA09_RS19625 PF03143 Elongation factor Tu C-terminal domain CDA09_RS19645 PF01565 FAD binding domain CDA09_RS19645 PF02913 FAD linked oxidases, C-terminal domain CDA09_RS19660 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS19660 PF00072 Response regulator receiver domain CDA09_RS19670 PF01627 Hpt domain CDA09_RS19670 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS19670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS19670 PF00672 HAMP domain CDA09_RS19670 PF00072 Response regulator receiver domain CDA09_RS19685 PF02515 CoA-transferase family III CDA09_RS19700 PF02310 B12 binding domain CDA09_RS19700 PF04055 Radical SAM superfamily CDA09_RS19705 PF02772 S-adenosylmethionine synthetase, central domain CDA09_RS19705 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDA09_RS19705 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDA09_RS19710 PF00156 Phosphoribosyl transferase domain CDA09_RS19715 PF01048 Phosphorylase superfamily CDA09_RS19725 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS19730 PF00005 ABC transporter CDA09_RS19740 PF00005 ABC transporter CDA09_RS19750 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS19755 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS19760 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS19760 PF00005 ABC transporter CDA09_RS19765 PF00501 AMP-binding enzyme CDA09_RS19780 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CDA09_RS19790 PF00072 Response regulator receiver domain CDA09_RS19790 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS19795 PF07730 Histidine kinase CDA09_RS19795 PF17200 Single Cache domain 2 CDA09_RS19800 PF09335 SNARE associated Golgi protein CDA09_RS19805 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS19805 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS19805 PF00563 EAL domain CDA09_RS19810 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDA09_RS19810 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDA09_RS19815 PF02310 B12 binding domain CDA09_RS19815 PF01642 Methylmalonyl-CoA mutase CDA09_RS19820 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDA09_RS19820 PF12833 Helix-turn-helix domain CDA09_RS19825 PF00072 Response regulator receiver domain CDA09_RS19825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS19825 PF13426 PAS domain CDA09_RS19830 PF00072 Response regulator receiver domain CDA09_RS19830 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS19855 PF02705 K+ potassium transporter CDA09_RS19860 PF00072 Response regulator receiver domain CDA09_RS19860 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS19865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS19865 PF13492 GAF domain CDA09_RS19865 PF02702 Osmosensitive K+ channel His kinase sensor domain CDA09_RS19865 PF13493 Domain of unknown function (DUF4118) CDA09_RS19865 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS19875 PF04228 Putative neutral zinc metallopeptidase CDA09_RS19885 PF07730 Histidine kinase CDA09_RS19885 PF17200 Single Cache domain 2 CDA09_RS19890 PF00072 Response regulator receiver domain CDA09_RS19890 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS19900 PF02630 SCO1/SenC CDA09_RS19905 PF00072 Response regulator receiver domain CDA09_RS19905 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS19910 PF13180 PDZ domain CDA09_RS19925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDA09_RS19925 PF18140 Propionyl-coenzyme A carboxylase BT domain CDA09_RS19925 PF02785 Biotin carboxylase C-terminal domain CDA09_RS19925 PF00289 Biotin carboxylase, N-terminal domain CDA09_RS19925 PF00364 Biotin-requiring enzyme CDA09_RS19930 PF01039 Carboxyl transferase domain CDA09_RS19940 PF01642 Methylmalonyl-CoA mutase CDA09_RS19940 PF02310 B12 binding domain CDA09_RS19945 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS19945 PF07729 FCD domain CDA09_RS19950 PF00206 Lyase CDA09_RS19950 PF10415 Fumarase C C-terminus CDA09_RS19965 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS19965 PF00072 Response regulator receiver domain CDA09_RS20010 PF13629 Pilus formation protein N terminal region CDA09_RS20010 PF04972 BON domain CDA09_RS20010 PF00263 Bacterial type II and III secretion system protein CDA09_RS20040 PF00437 Type II/IV secretion system protein CDA09_RS20060 PF00474 Sodium:solute symporter family CDA09_RS20065 PF04341 Protein of unknown function, DUF485 CDA09_RS20070 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS20075 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDA09_RS20075 PF07685 CobB/CobQ-like glutamine amidotransferase domain CDA09_RS20080 PF03186 CobD/Cbib protein CDA09_RS20085 PF00155 Aminotransferase class I and II CDA09_RS20090 PF16199 Radical_SAM C-terminal domain CDA09_RS20090 PF04055 Radical SAM superfamily CDA09_RS20095 PF01497 Periplasmic binding protein CDA09_RS20105 PF00271 Helicase conserved C-terminal domain CDA09_RS20105 PF00270 DEAD/DEAH box helicase CDA09_RS20115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_RS20120 PF01903 CbiX CDA09_RS20125 PF02570 Precorrin-8X methylmutase CDA09_RS20130 PF01888 CbiD CDA09_RS20135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_RS20140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_RS20160 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDA09_RS20160 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDA09_RS20165 PF00593 TonB dependent receptor CDA09_RS20165 PF07715 TonB-dependent Receptor Plug Domain CDA09_RS20175 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDA09_RS20175 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDA09_RS20180 PF00817 impB/mucB/samB family CDA09_RS20180 PF11799 impB/mucB/samB family C-terminal domain CDA09_RS20185 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDA09_RS20185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDA09_RS20190 PF06276 Ferric iron reductase FhuF-like transporter CDA09_RS20190 PF04183 IucA / IucC family CDA09_RS20195 PF07690 Major Facilitator Superfamily CDA09_RS20215 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDA09_RS20215 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDA09_RS20220 PF03466 LysR substrate binding domain CDA09_RS20220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS20225 PF00106 short chain dehydrogenase CDA09_RS20230 PF01810 LysE type translocator CDA09_RS20245 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDA09_RS20245 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDA09_RS20265 PF01292 Prokaryotic cytochrome b561 CDA09_RS20270 PF08534 Redoxin CDA09_RS20275 PF02683 Cytochrome C biogenesis protein transmembrane region CDA09_RS20275 PF17991 Thioredoxin like C-terminal domain CDA09_RS20275 PF00578 AhpC/TSA family CDA09_RS20280 PF01569 PAP2 superfamily CDA09_RS20285 PF01569 PAP2 superfamily CDA09_RS20305 PF01380 SIS domain CDA09_RS20310 PF12804 MobA-like NTP transferase domain CDA09_RS20310 PF00132 Bacterial transferase hexapeptide (six repeats) CDA09_RS20315 PF01515 Phosphate acetyl/butaryl transferase CDA09_RS20320 PF00871 Acetokinase family CDA09_RS20325 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDA09_RS20325 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS20330 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDA09_RS20330 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDA09_RS20335 PF04898 Glutamate synthase central domain CDA09_RS20335 PF00310 Glutamine amidotransferases class-II CDA09_RS20335 PF01493 GXGXG motif CDA09_RS20335 PF01645 Conserved region in glutamate synthase CDA09_RS20340 PF13286 Phosphohydrolase-associated domain CDA09_RS20340 PF01966 HD domain CDA09_RS20345 PF01761 3-dehydroquinate synthase CDA09_RS20350 PF01202 Shikimate kinase CDA09_RS20370 PF05137 Fimbrial assembly protein (PilN) CDA09_RS20375 PF11104 Type IV pilus assembly protein PilM; CDA09_RS20380 PF17092 Penicillin-binding protein OB-like domain CDA09_RS20380 PF00912 Transglycosylase CDA09_RS20380 PF00905 Penicillin binding protein transpeptidase domain CDA09_RS20385 PF01491 Frataxin-like domain CDA09_RS20395 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDA09_RS20395 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDA09_RS20405 PF04321 RmlD substrate binding domain CDA09_RS20410 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDA09_RS20415 PF00483 Nucleotidyl transferase CDA09_RS20420 PF16363 GDP-mannose 4,6 dehydratase CDA09_RS20425 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CDA09_RS20435 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CDA09_RS20440 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDA09_RS20450 PF01040 UbiA prenyltransferase family CDA09_RS20455 PF04345 Chorismate lyase CDA09_RS20460 PF00270 DEAD/DEAH box helicase CDA09_RS20460 PF00271 Helicase conserved C-terminal domain CDA09_RS20460 PF17191 RecG wedge domain CDA09_RS20465 PF01042 Endoribonuclease L-PSP CDA09_RS20470 PF02623 FliW protein CDA09_RS20490 PF05726 Pirin C-terminal cupin domain CDA09_RS20490 PF02678 Pirin CDA09_RS20495 PF00881 Nitroreductase family CDA09_RS20500 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS20505 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS20505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS20510 PF00072 Response regulator receiver domain CDA09_RS20510 PF00486 Transcriptional regulatory protein, C terminal CDA09_RS20515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_RS20520 PF00873 AcrB/AcrD/AcrF family CDA09_RS20525 PF02321 Outer membrane efflux protein CDA09_RS20535 PF02803 Thiolase, C-terminal domain CDA09_RS20535 PF00108 Thiolase, N-terminal domain CDA09_RS20540 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS20540 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS20540 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS20545 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CDA09_RS20550 PF03061 Thioesterase superfamily CDA09_RS20555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS20555 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS20555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS20560 PF02803 Thiolase, C-terminal domain CDA09_RS20560 PF00108 Thiolase, N-terminal domain CDA09_RS20565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS20565 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS20565 PF09317 Domain of unknown function (DUF1974) CDA09_RS20565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS20570 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS20570 PF09209 Tetracyclin repressor-like, C-terminal domain CDA09_RS20585 PF00005 ABC transporter CDA09_RS20585 PF06472 ABC transporter transmembrane region 2 CDA09_RS20595 PF16657 Maltogenic Amylase, C-terminal domain CDA09_RS20595 PF00128 Alpha amylase, catalytic domain CDA09_RS20600 PF02646 RmuC family CDA09_RS20605 PF00005 ABC transporter CDA09_RS20605 PF00664 ABC transporter transmembrane region CDA09_RS20610 PF02254 TrkA-N domain CDA09_RS20610 PF00999 Sodium/hydrogen exchanger family CDA09_RS20615 PF00710 Asparaginase, N-terminal CDA09_RS20615 PF17763 Glutaminase/Asparaginase C-terminal domain CDA09_RS20620 PF03466 LysR substrate binding domain CDA09_RS20620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS20625 PF01925 Sulfite exporter TauE/SafE CDA09_RS20640 PF01507 Phosphoadenosine phosphosulfate reductase family CDA09_RS20645 PF01507 Phosphoadenosine phosphosulfate reductase family CDA09_RS20650 PF00009 Elongation factor Tu GTP binding domain CDA09_RS20665 PF01145 SPFH domain / Band 7 family CDA09_RS20665 PF16200 C-terminal region of band_7 CDA09_RS20670 PF07724 AAA domain (Cdc48 subfamily) CDA09_RS20670 PF00004 ATPase family associated with various cellular activities (AAA) CDA09_RS20670 PF10431 C-terminal, D2-small domain, of ClpB protein CDA09_RS20675 PF00227 Proteasome subunit CDA09_RS20685 PF03061 Thioesterase superfamily CDA09_RS20690 PF01618 MotA/TolQ/ExbB proton channel family CDA09_RS20695 PF02472 Biopolymer transport protein ExbD/TolR CDA09_RS20705 PF04052 TolB amino-terminal domain CDA09_RS20705 PF07676 WD40-like Beta Propeller Repeat CDA09_RS20710 PF00691 OmpA family CDA09_RS20720 PF04055 Radical SAM superfamily CDA09_RS20725 PF06508 Queuosine biosynthesis protein QueC CDA09_RS20730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS20730 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS20730 PF00989 PAS fold CDA09_RS20735 PF02954 Bacterial regulatory protein, Fis family CDA09_RS20735 PF00072 Response regulator receiver domain CDA09_RS20735 PF00158 Sigma-54 interaction domain CDA09_RS20805 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS20805 PF13188 PAS domain CDA09_RS20805 PF00563 EAL domain CDA09_RS20805 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS20810 PF00501 AMP-binding enzyme CDA09_RS20810 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS20815 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS20815 PF00005 ABC transporter CDA09_RS20820 PF00005 ABC transporter CDA09_RS20830 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS20835 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS20840 PF02769 AIR synthase related protein, C-terminal domain CDA09_RS20840 PF00586 AIR synthase related protein, N-terminal domain CDA09_RS20845 PF04608 Phosphatidylglycerophosphatase A CDA09_RS20850 PF02464 Competence-damaged protein CDA09_RS20855 PF00154 recA bacterial DNA recombination protein CDA09_RS20860 PF02631 RecX family CDA09_RS20865 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS20865 PF00005 ABC transporter CDA09_RS20870 PF04552 Sigma-54, DNA binding domain CDA09_RS20870 PF04963 Sigma-54 factor, core binding domain CDA09_RS20870 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDA09_RS20875 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDA09_RS20880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDA09_RS20885 PF02603 HPr Serine kinase N terminus CDA09_RS20885 PF07475 HPr Serine kinase C-terminal domain CDA09_RS20890 PF00585 C-terminal regulatory domain of Threonine dehydratase CDA09_RS20890 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_RS20895 PF01812 5-formyltetrahydrofolate cyclo-ligase family CDA09_RS20900 PF14718 Soluble lytic murein transglycosylase L domain CDA09_RS20900 PF01464 Transglycosylase SLT domain CDA09_RS20905 PF01370 NAD dependent epimerase/dehydratase family CDA09_RS20915 PF01743 Poly A polymerase head domain CDA09_RS20915 PF12627 Probable RNA and SrmB- binding site of polymerase A CDA09_RS20915 PF01966 HD domain CDA09_RS20925 PF00561 alpha/beta hydrolase fold CDA09_RS20945 PF01171 PP-loop family CDA09_RS20955 PF09335 SNARE associated Golgi protein CDA09_RS20960 PF01042 Endoribonuclease L-PSP CDA09_RS20970 PF02146 Sir2 family CDA09_RS20975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_RS20975 PF01568 Molydopterin dinucleotide binding domain CDA09_RS20975 PF00384 Molybdopterin oxidoreductase CDA09_RS20985 PF00156 Phosphoribosyl transferase domain CDA09_RS20990 PF03372 Endonuclease/Exonuclease/phosphatase family CDA09_RS21010 PF00156 Phosphoribosyl transferase domain CDA09_RS21020 PF00563 EAL domain CDA09_RS21020 PF12792 CSS motif domain associated with EAL CDA09_RS21035 PF01494 FAD binding domain CDA09_RS21050 PF00270 DEAD/DEAH box helicase CDA09_RS21050 PF18019 HD domain CDA09_RS21050 PF00271 Helicase conserved C-terminal domain CDA09_RS21055 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) CDA09_RS21060 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) CDA09_RS21065 PF09344 CT1975-like protein CDA09_RS21070 PF09704 CRISPR-associated protein (Cas_Cas5) CDA09_RS21090 PF01867 CRISPR associated protein Cas1 CDA09_RS21095 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) CDA09_RS21110 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CDA09_RS21110 PF01565 FAD binding domain CDA09_RS21130 PF03144 Elongation factor Tu domain 2 CDA09_RS21130 PF16658 Class II release factor RF3, C-terminal domain CDA09_RS21130 PF00009 Elongation factor Tu GTP binding domain CDA09_RS21140 PF03741 Integral membrane protein TerC family CDA09_RS21160 PF07075 Protein of unknown function (DUF1343) CDA09_RS21170 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDA09_RS21170 PF14572 Phosphoribosyl synthetase-associated domain CDA09_RS21185 PF02310 B12 binding domain CDA09_RS21185 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDA09_RS21185 PF02574 Homocysteine S-methyltransferase CDA09_RS21185 PF00809 Pterin binding enzyme CDA09_RS21185 PF02607 B12 binding domain CDA09_RS21190 PF00561 alpha/beta hydrolase fold CDA09_RS21205 PF13458 Periplasmic binding protein CDA09_RS21210 PF13458 Periplasmic binding protein CDA09_RS21215 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS21220 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS21220 PF11862 Domain of unknown function (DUF3382) CDA09_RS21225 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS21225 PF00005 ABC transporter CDA09_RS21230 PF00005 ABC transporter CDA09_RS21240 PF07690 Major Facilitator Superfamily CDA09_RS21245 PF13335 Magnesium chelatase, subunit ChlI C-terminal CDA09_RS21245 PF01078 Magnesium chelatase, subunit ChlI CDA09_RS21260 PF00543 Nitrogen regulatory protein P-II CDA09_RS21265 PF00909 Ammonium Transporter Family CDA09_RS21270 PF00551 Formyl transferase CDA09_RS21280 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_RS21280 PF13291 ACT domain CDA09_RS21285 PF00005 ABC transporter CDA09_RS21285 PF12848 ABC transporter CDA09_RS21300 PF02424 ApbE family CDA09_RS21305 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CDA09_RS21305 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CDA09_RS21315 PF12950 TaqI-like C-terminal specificity domain CDA09_RS21315 PF07669 Eco57I restriction-modification methylase CDA09_RS21335 PF08340 Domain of unknown function (DUF1732) CDA09_RS21335 PF03755 YicC-like family, N-terminal region CDA09_RS21340 PF00069 Protein kinase domain CDA09_RS21340 PF03793 PASTA domain CDA09_RS21350 PF01138 3' exoribonuclease family, domain 1 CDA09_RS21350 PF03725 3' exoribonuclease family, domain 2 CDA09_RS21355 PF01725 Ham1 family CDA09_RS21360 PF04055 Radical SAM superfamily CDA09_RS21360 PF06969 HemN C-terminal domain CDA09_RS21365 PF01343 Peptidase family S49 CDA09_RS21370 PF02390 Putative methyltransferase CDA09_RS21375 PF05690 Thiazole biosynthesis protein ThiG CDA09_RS21380 PF02597 ThiS family CDA09_RS21380 PF05690 Thiazole biosynthesis protein ThiG CDA09_RS21390 PF00589 Phage integrase family CDA09_RS21390 PF13356 Arm DNA-binding domain CDA09_RS21400 PF01381 Helix-turn-helix CDA09_RS21405 PF03466 LysR substrate binding domain CDA09_RS21405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS21425 PF05717 IS66 Orf2 like protein CDA09_RS21430 PF03050 Transposase IS66 family CDA09_RS21430 PF13817 IS66 C-terminal element CDA09_RS21430 PF13007 Transposase C of IS166 homeodomain CDA09_RS21430 PF13005 zinc-finger binding domain of transposase IS66 CDA09_RS21435 PF07929 Plasmid pRiA4b ORF-3-like protein CDA09_RS21440 PF00561 alpha/beta hydrolase fold CDA09_RS21455 PF00682 HMGL-like CDA09_RS21455 PF07836 DmpG-like communication domain CDA09_RS21460 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDA09_RS21460 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDA09_RS21465 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDA09_RS21470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDA09_RS21475 PF00106 short chain dehydrogenase CDA09_RS21485 PF00355 Rieske [2Fe-2S] domain CDA09_RS21490 PF06139 BphX-like CDA09_RS21495 PF00866 Ring hydroxylating beta subunit CDA09_RS21500 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDA09_RS21500 PF00355 Rieske [2Fe-2S] domain CDA09_RS21505 PF07729 FCD domain CDA09_RS21505 PF00392 Bacterial regulatory proteins, gntR family CDA09_RS21535 PF01638 HxlR-like helix-turn-helix CDA09_RS21555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDA09_RS21565 PF00005 ABC transporter CDA09_RS21570 PF00005 ABC transporter CDA09_RS21575 PF13533 Biotin-lipoyl like CDA09_RS21585 PF00873 AcrB/AcrD/AcrF family CDA09_RS21590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_RS21595 PF03033 Glycosyltransferase family 28 N-terminal domain CDA09_RS21595 PF04101 Glycosyltransferase family 28 C-terminal domain CDA09_RS21605 PF01734 Patatin-like phospholipase CDA09_RS21610 PF03109 ABC1 family CDA09_RS21650 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system CDA09_RS21685 PF04002 RadC-like JAB domain CDA09_RS21750 PF07690 Major Facilitator Superfamily CDA09_RS21760 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS21770 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS21770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS21770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS21775 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDA09_RS21775 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDA09_RS21780 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS21780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS21780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS21785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDA09_RS21790 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CDA09_RS21790 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CDA09_RS21790 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CDA09_RS21795 PF00037 4Fe-4S binding domain CDA09_RS21805 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS21810 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS21815 PF08240 Alcohol dehydrogenase GroES-like domain CDA09_RS21815 PF00107 Zinc-binding dehydrogenase CDA09_RS21820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS21820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS21825 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS21830 PF00108 Thiolase, N-terminal domain CDA09_RS21830 PF02803 Thiolase, C-terminal domain CDA09_RS21840 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_RS21845 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_RS21855 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_RS21860 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_RS21870 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS21880 PF00005 ABC transporter CDA09_RS21880 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS21885 PF00005 ABC transporter CDA09_RS21890 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS21890 PF00501 AMP-binding enzyme CDA09_RS21895 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS21905 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS21905 PF00072 Response regulator receiver domain CDA09_RS21910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS21910 PF13188 PAS domain CDA09_RS21910 PF13426 PAS domain CDA09_RS21915 PF04055 Radical SAM superfamily CDA09_RS21920 PF08201 BssC/TutF protein CDA09_RS21925 PF02901 Pyruvate formate lyase-like CDA09_RS21925 PF01228 Glycine radical CDA09_RS21930 PF18512 Benzylsuccinate synthase beta subunit CDA09_RS21935 PF07728 AAA domain (dynein-related subfamily) CDA09_RS21935 PF08406 CbbQ/NirQ/NorQ C-terminal CDA09_RS21975 PF07969 Amidohydrolase family CDA09_RS21980 PF08448 PAS fold CDA09_RS21980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS21980 PF13426 PAS domain CDA09_RS21980 PF00072 Response regulator receiver domain CDA09_RS21980 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS21985 PF01161 Phosphatidylethanolamine-binding protein CDA09_RS21990 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS21995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS21995 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS21995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS22005 PF02515 CoA-transferase family III CDA09_RS22010 PF02515 CoA-transferase family III CDA09_RS22110 PF00216 Bacterial DNA-binding protein CDA09_RS22140 PF00899 ThiF family CDA09_RS22140 PF14461 Prokaryotic E2 family B CDA09_RS22150 PF06067 Domain of unknown function (DUF932) CDA09_RS22165 PF00816 H-NS histone family CDA09_RS22190 PF01751 Toprim domain CDA09_RS22190 PF01131 DNA topoisomerase CDA09_RS22235 PF13614 AAA domain CDA09_RS22255 PF00080 Copper/zinc superoxide dismutase (SODC) CDA09_RS22260 PF01613 Flavin reductase like domain CDA09_RS22265 PF10576 Iron-sulfur binding domain of endonuclease III CDA09_RS22265 PF00633 Helix-hairpin-helix motif CDA09_RS22265 PF00730 HhH-GPD superfamily base excision DNA repair protein CDA09_RS22265 PF14815 NUDIX domain CDA09_RS22275 PF02441 Flavoprotein CDA09_RS22285 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS22285 PF11862 Domain of unknown function (DUF3382) CDA09_RS22290 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS22295 PF03458 UPF0126 domain CDA09_RS22300 PF01741 Large-conductance mechanosensitive channel, MscL CDA09_RS22305 PF00753 Metallo-beta-lactamase superfamily CDA09_RS22310 PF03459 TOBE domain CDA09_RS22310 PF00005 ABC transporter CDA09_RS22315 PF00528 Binding-protein-dependent transport system inner membrane component CDA09_RS22325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS22325 PF03459 TOBE domain CDA09_RS22330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS22330 PF03459 TOBE domain CDA09_RS22340 PF00990 Diguanylate cyclase, GGDEF domain CDA09_RS22340 PF00563 EAL domain CDA09_RS22340 PF03707 Bacterial signalling protein N terminal repeat CDA09_RS22370 PF00535 Glycosyl transferase family 2 CDA09_RS22375 PF01522 Polysaccharide deacetylase CDA09_RS22375 PF14883 Hypothetical glycosyl hydrolase family 13 CDA09_RS22475 PF13473 Cupredoxin-like domain CDA09_RS22480 PF03239 Iron permease FTR1 family CDA09_RS22495 PF00037 4Fe-4S binding domain CDA09_RS22495 PF01568 Molydopterin dinucleotide binding domain CDA09_RS22495 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDA09_RS22495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDA09_RS22495 PF00384 Molybdopterin oxidoreductase CDA09_RS22500 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDA09_RS22500 PF10531 SLBB domain CDA09_RS22500 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDA09_RS22505 PF03466 LysR substrate binding domain CDA09_RS22505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS22510 PF01676 Metalloenzyme superfamily CDA09_RS22510 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CDA09_RS22515 PF08212 Lipocalin-like domain CDA09_RS22535 PF01047 MarR family CDA09_RS22540 PF02321 Outer membrane efflux protein CDA09_RS22545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDA09_RS22545 PF00529 HlyD membrane-fusion protein of T1SS CDA09_RS22550 PF07690 Major Facilitator Superfamily CDA09_RS22560 PF00072 Response regulator receiver domain CDA09_RS22560 PF00196 Bacterial regulatory proteins, luxR family CDA09_RS22565 PF17200 Single Cache domain 2 CDA09_RS22565 PF07730 Histidine kinase CDA09_RS22570 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CDA09_RS22585 PF08681 Protein of unknown function (DUF1778) CDA09_RS22615 PF08378 Nuclease-related domain CDA09_RS22625 PF13977 BetI-type transcriptional repressor, C-terminal CDA09_RS22625 PF00440 Bacterial regulatory proteins, tetR family CDA09_RS22630 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS22635 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS22645 PF00501 AMP-binding enzyme CDA09_RS22645 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS22655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDA09_RS22665 PF02770 Acyl-CoA dehydrogenase, middle domain CDA09_RS22665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDA09_RS22665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDA09_RS22670 PF00106 short chain dehydrogenase CDA09_RS22675 PF00291 Pyridoxal-phosphate dependent enzyme CDA09_RS22680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDA09_RS22680 PF03466 LysR substrate binding domain CDA09_RS22685 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_RS22690 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDA09_RS22695 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_RS22700 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CDA09_RS22705 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CDA09_RS22705 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDA09_RS22705 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDA09_RS22710 PF00301 Rubredoxin CDA09_RS22715 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS22730 PF00005 ABC transporter CDA09_RS22735 PF00005 ABC transporter CDA09_RS22735 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS22745 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS22755 PF13193 AMP-binding enzyme C-terminal domain CDA09_RS22755 PF00501 AMP-binding enzyme CDA09_RS22765 PF00171 Aldehyde dehydrogenase family CDA09_RS22770 PF01202 Shikimate kinase CDA09_RS22775 PF00378 Enoyl-CoA hydratase/isomerase CDA09_RS22785 PF00175 Oxidoreductase NAD-binding domain CDA09_RS22785 PF00970 Oxidoreductase FAD-binding domain CDA09_RS22785 PF00037 4Fe-4S binding domain CDA09_RS22790 PF02803 Thiolase, C-terminal domain CDA09_RS22790 PF00108 Thiolase, N-terminal domain CDA09_RS22795 PF17200 Single Cache domain 2 CDA09_RS22795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS22795 PF00672 HAMP domain CDA09_RS22810 PF08495 FIST N domain CDA09_RS22810 PF10442 FIST C domain CDA09_RS22825 PF16325 Peptidase family U32 C-terminal domain CDA09_RS22825 PF01136 Peptidase family U32 CDA09_RS22830 PF12848 ABC transporter CDA09_RS22830 PF00005 ABC transporter CDA09_RS22835 PF03610 PTS system fructose IIA component CDA09_RS22840 PF00381 PTS HPr component phosphorylation site CDA09_RS22845 PF02896 PEP-utilising enzyme, TIM barrel domain CDA09_RS22845 PF05524 PEP-utilising enzyme, N-terminal CDA09_RS22845 PF00391 PEP-utilising enzyme, mobile domain CDA09_RS22850 PF00561 alpha/beta hydrolase fold CDA09_RS22865 PF07690 Major Facilitator Superfamily CDA09_RS22880 PF17200 Single Cache domain 2 CDA09_RS22880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS22880 PF00672 HAMP domain CDA09_RS22885 PF00106 short chain dehydrogenase CDA09_RS22895 PF03475 3-alpha domain CDA09_RS22895 PF03473 MOSC domain CDA09_RS22920 PF02769 AIR synthase related protein, C-terminal domain CDA09_RS22920 PF00586 AIR synthase related protein, N-terminal domain CDA09_RS22925 PF01924 Hydrogenase formation hypA family CDA09_RS22930 PF01455 HupF/HypC family CDA09_RS22935 PF00708 Acylphosphatase CDA09_RS22935 PF01300 Telomere recombination CDA09_RS22935 PF17788 HypF Kae1-like domain CDA09_RS22935 PF07503 HypF finger CDA09_RS22940 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDA09_RS22945 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CDA09_RS22955 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CDA09_RS22955 PF18074 Primosomal protein N C-terminal domain CDA09_RS22955 PF00270 DEAD/DEAH box helicase CDA09_RS22955 PF17764 3′ DNA-binding domain (3′BD) CDA09_RS22955 PF00271 Helicase conserved C-terminal domain CDA09_RS22960 PF01208 Uroporphyrinogen decarboxylase (URO-D) CDA09_RS22965 PF04955 HupE / UreJ protein CDA09_RS22975 PF01730 UreF CDA09_RS22980 PF05194 UreE urease accessory protein, C-terminal domain CDA09_RS22980 PF02814 UreE urease accessory protein, N-terminal domain CDA09_RS22985 PF00449 Urease alpha-subunit, N-terminal domain CDA09_RS22985 PF01979 Amidohydrolase family CDA09_RS22990 PF00699 Urease beta subunit CDA09_RS22995 PF00547 Urease, gamma subunit CDA09_RS23000 PF01774 UreD urease accessory protein CDA09_RS23005 PF00005 ABC transporter CDA09_RS23010 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDA09_RS23010 PF00005 ABC transporter CDA09_RS23020 PF02653 Branched-chain amino acid transport system / permease component CDA09_RS23030 PF00672 HAMP domain CDA09_RS23030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDA09_RS23035 PF00158 Sigma-54 interaction domain CDA09_RS23035 PF00072 Response regulator receiver domain CDA09_RS23035 PF02954 Bacterial regulatory protein, Fis family CDA09_RS23040 PF00989 PAS fold CDA09_RS23040 PF00512 His Kinase A (phospho-acceptor) domain CDA09_RS23040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDA09_RS23040 PF00672 HAMP domain CDA09_RS23050 PF01029 NusB family CDA09_RS23050 PF01189 16S rRNA methyltransferase RsmB/F CDA09_RS23055 PF17284 Spermidine synthase tetramerisation domain CDA09_RS23060 PF01926 50S ribosome-binding GTPase CDA09_RS23060 PF12631 MnmE helical domain CDA09_RS23060 PF10396 GTP-binding protein TrmE N-terminus CDA09_RS23065 PF14849 YidC periplasmic domain CDA09_RS23065 PF02096 60Kd inner membrane protein CDA09_RS23070 PF01809 Putative membrane protein insertion efficiency factor CDA09_RS23075 PF00825 Ribonuclease P