C0099_RS00010	SM00480	DNA polymerase III beta subunit
C0099_RS00015	SM00387	Histidine kinase-like ATPases
C0099_RS00015	SM00433	TopoisomeraseII
C0099_RS00070	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C0099_RS00080	SM00861	Transketolase, pyrimidine binding domain
C0099_RS00115	SM00841	Elongation factor P, C-terminal
C0099_RS00115	SM01185	C0099_RS00115
C0099_RS00150	SM00704	CDGSH-type zinc finger. Function unknown.
C0099_RS00180	SM00327	von Willebrand factor (vWF) type A domain
C0099_RS00185	SM00028	Tetratricopeptide repeats
C0099_RS00195	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
C0099_RS00270	SM00382	ATPases associated with a variety of cellular activities
C0099_RS00305	SM00506	Appr-1"-p processing enzyme
C0099_RS00350	SM00988	UreE urease accessory protein, N-terminal domain
C0099_RS00375	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C0099_RS00380	SM00226	Low molecular weight phosphatase family
C0099_RS00390	SM00849	Metallo-beta-lactamase superfamily
C0099_RS00395	SM00052	Putative diguanylate phosphodiesterase
C0099_RS00395	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C0099_RS00395	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS00395	SM00091	PAS domain
C0099_RS00395	SM00267	diguanylate cyclase
C0099_RS00405	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS00455	SM00116	Domain in cystathionine beta-synthase and other proteins.
C0099_RS00460	SM00382	ATPases associated with a variety of cellular activities
C0099_RS00510	SM01005	Alanine racemase, C-terminal domain
C0099_RS00515	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C0099_RS00525	SM00411	bacterial (prokaryotic) histone like domain
C0099_RS00585	SM00487	DEAD-like helicases superfamily
C0099_RS00585	SM00490	helicase superfamily c-terminal domain
C0099_RS00615	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
C0099_RS00670	SM01219	C0099_RS00670
C0099_RS00680	SM00842	Cell division protein FtsA
C0099_RS00700	SM00965	Secretin and TonB N terminus short domain
C0099_RS00715	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C0099_RS00750	SM00382	ATPases associated with a variety of cellular activities
C0099_RS00755	SM00382	ATPases associated with a variety of cellular activities
C0099_RS00810	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS00840	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C0099_RS00875	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS00930	SM00464	Found in ATP-dependent protease La (LON)
C0099_RS00935	SM00478	endonuclease III
C0099_RS00940	SM00903	Flavin reductase like domain
C0099_RS00985	SM00729	Elongator protein 3, MiaB family, Radical SAM
C0099_RS01000	SM00331	Sigma factor PP2C-like phosphatases
C0099_RS01000	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
C0099_RS01005	SM00220	Serine/Threonine protein kinases, catalytic domain
C0099_RS01015	SM00072	Guanylate kinase homologues.
C0099_RS01020	SM01409	C0099_RS01020
C0099_RS01025	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C0099_RS01025	SM00954	Region found in RelA / SpoT proteins
C0099_RS01055	SM00849	Metallo-beta-lactamase superfamily
C0099_RS01070	SM00833	Cobalamin synthesis protein cobW C-terminal domain
C0099_RS01075	SM00479	C0099_RS01075
C0099_RS01110	SM00387	Histidine kinase-like ATPases
C0099_RS01110	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS01110	SM00448	cheY-homologous receiver domain
C0099_RS01115	SM00421	helix_turn_helix, Lux Regulon
C0099_RS01115	SM00448	cheY-homologous receiver domain
C0099_RS01135	SM00382	ATPases associated with a variety of cellular activities
C0099_RS01170	SM00382	ATPases associated with a variety of cellular activities
C0099_RS01175	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS01210	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
C0099_RS01245	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS01260	SM00382	ATPases associated with a variety of cellular activities
C0099_RS01275	SM00342	helix_turn_helix, arabinose operon control protein
C0099_RS01280	SM00834	Putative regulatory protein
C0099_RS01290	SM00052	Putative diguanylate phosphodiesterase
C0099_RS01290	SM00448	cheY-homologous receiver domain
C0099_RS01295	SM00387	Histidine kinase-like ATPases
C0099_RS01300	SM00421	helix_turn_helix, Lux Regulon
C0099_RS01315	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS01315	SM00895	C0099_RS01315
C0099_RS01335	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS01335	SM00895	C0099_RS01335
C0099_RS01355	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
C0099_RS01370	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
C0099_RS01375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS01415	SM00347	helix_turn_helix multiple antibiotic resistance protein
C0099_RS01455	SM00116	Domain in cystathionine beta-synthase and other proteins.
C0099_RS01515	SM00226	Low molecular weight phosphatase family
C0099_RS01530	SM00387	Histidine kinase-like ATPases
C0099_RS01530	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS01535	SM00448	cheY-homologous receiver domain
C0099_RS01535	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS01550	SM00387	Histidine kinase-like ATPases
C0099_RS01550	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS01550	SM01080	C0099_RS01550
C0099_RS01555	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C0099_RS01590	SM00829	Enoylreductase
C0099_RS01595	SM00052	Putative diguanylate phosphodiesterase
C0099_RS01595	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS01595	SM00091	PAS domain
C0099_RS01595	SM00267	diguanylate cyclase
C0099_RS01615	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS01615	SM00895	C0099_RS01615
C0099_RS01635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS01635	SM00895	C0099_RS01635
C0099_RS01750	SM00382	ATPases associated with a variety of cellular activities
C0099_RS01755	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS01755	SM00091	PAS domain
C0099_RS01755	SM00267	diguanylate cyclase
C0099_RS01795	SM00091	PAS domain
C0099_RS01800	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
C0099_RS01805	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C0099_RS01820	SM00829	Enoylreductase
C0099_RS01860	SM00749	bacterial OsmY and nodulation domain
C0099_RS01920	SM00382	ATPases associated with a variety of cellular activities
C0099_RS01920	SM01086	C-terminal, D2-small domain, of ClpB protein
C0099_RS01940	SM00244	prohibitin homologues
C0099_RS01995	SM00870	C0099_RS01995
C0099_RS02000	SM00382	ATPases associated with a variety of cellular activities
C0099_RS02080	SM00836	DALR anticodon binding domain
C0099_RS02080	SM01016	Arginyl tRNA synthetase N terminal dom
C0099_RS02115	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
C0099_RS02115	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
C0099_RS02130	SM00849	Metallo-beta-lactamase superfamily
C0099_RS02175	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
C0099_RS02195	SM00267	diguanylate cyclase
C0099_RS02195	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS02265	SM00363	S4 RNA-binding domain
C0099_RS02280	SM00996	S-adenosyl-L-homocysteine hydrolase
C0099_RS02280	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
C0099_RS02305	SM01007	Class II Aldolase and Adducin N-terminal domain
C0099_RS02330	SM00387	Histidine kinase-like ATPases
C0099_RS02330	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS02335	SM00382	ATPases associated with a variety of cellular activities
C0099_RS02335	SM00448	cheY-homologous receiver domain
C0099_RS02340	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS02380	SM00984	UDP binding domain
C0099_RS02420	SM00858	C0099_RS02420
C0099_RS02465	SM00382	ATPases associated with a variety of cellular activities
C0099_RS02490	SM00644	C0099_RS02490
C0099_RS02515	SM00919	Malic enzyme, NAD binding domain
C0099_RS02515	SM01274	C0099_RS02515
C0099_RS02555	SM00382	ATPases associated with a variety of cellular activities
C0099_RS02565	SM00382	ATPases associated with a variety of cellular activities
C0099_RS02585	SM00052	Putative diguanylate phosphodiesterase
C0099_RS02585	SM00267	diguanylate cyclase
C0099_RS02605	SM00052	Putative diguanylate phosphodiesterase
C0099_RS02605	SM00091	PAS domain
C0099_RS02605	SM00267	diguanylate cyclase
C0099_RS02605	SM00448	cheY-homologous receiver domain
C0099_RS02610	SM00387	Histidine kinase-like ATPases
C0099_RS02635	SM00981	C0099_RS02635
C0099_RS02645	SM00382	ATPases associated with a variety of cellular activities
C0099_RS02685	SM00732	Likely ribonuclease with RNase H fold.
C0099_RS02700	SM00073	Histidine Phosphotransfer domain
C0099_RS02700	SM00260	Two component signalling adaptor domain
C0099_RS02700	SM00387	Histidine kinase-like ATPases
C0099_RS02700	SM00448	cheY-homologous receiver domain
C0099_RS02700	SM01231	C0099_RS02700
C0099_RS02705	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C0099_RS02715	SM00448	cheY-homologous receiver domain
C0099_RS02720	SM00448	cheY-homologous receiver domain
C0099_RS02745	SM00116	Domain in cystathionine beta-synthase and other proteins.
C0099_RS02745	SM00924	MgtE intracellular N domain
C0099_RS02765	SM00955	C0099_RS02765
C0099_RS02795	SM00052	Putative diguanylate phosphodiesterase
C0099_RS02795	SM00091	PAS domain
C0099_RS02795	SM00267	diguanylate cyclase
C0099_RS02815	SM01057	Eukaryotic-type carbonic anhydrase
C0099_RS02855	SM00878	Biotin carboxylase C-terminal domain
C0099_RS02880	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS02880	SM00387	Histidine kinase-like ATPases
C0099_RS02880	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS02880	SM00448	cheY-homologous receiver domain
C0099_RS02885	SM00421	helix_turn_helix, Lux Regulon
C0099_RS02885	SM00448	cheY-homologous receiver domain
C0099_RS02930	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
C0099_RS02935	SM00649	Ribosomal protein L11/L12
C0099_RS02960	SM00663	RNA polymerase I subunit A N-terminus
C0099_RS02975	SM00838	Elongation factor G C-terminus
C0099_RS02975	SM00889	Elongation factor G, domain IV
C0099_RS02985	SM01403	C0099_RS02985
C0099_RS03005	SM01382	C0099_RS03005
C0099_RS03005	SM01383	C0099_RS03005
C0099_RS03020	SM00322	K homology RNA-binding domain
C0099_RS03040	SM01374	C0099_RS03040
C0099_RS03045	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
C0099_RS03095	SM00316	Ribosomal protein S1-like RNA-binding domain
C0099_RS03115	SM00363	S4 RNA-binding domain
C0099_RS03115	SM01390	C0099_RS03115
C0099_RS03120	SM00662	RNA polymerases D
C0099_RS03130	SM00363	S4 RNA-binding domain
C0099_RS03150	SM00382	ATPases associated with a variety of cellular activities
C0099_RS03170	SM00849	Metallo-beta-lactamase superfamily
C0099_RS03225	SM00346	helix_turn_helix isocitrate lyase regulation
C0099_RS03265	SM00363	S4 RNA-binding domain
C0099_RS03325	SM00986	Uracil DNA glycosylase superfamily
C0099_RS03325	SM00987	UreE urease accessory protein, C-terminal domain 
C0099_RS03335	SM00382	ATPases associated with a variety of cellular activities
C0099_RS03335	SM00487	DEAD-like helicases superfamily
C0099_RS03335	SM00490	helicase superfamily c-terminal domain
C0099_RS03335	SM00847	Helicase associated domain (HA2)  Add an annotation
C0099_RS03360	SM00382	ATPases associated with a variety of cellular activities
C0099_RS03415	SM01323	C0099_RS03415
C0099_RS03450	SM00977	TilS substrate C-terminal domain
C0099_RS03455	SM00421	helix_turn_helix, Lux Regulon
C0099_RS03455	SM00448	cheY-homologous receiver domain
C0099_RS03460	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS03460	SM00091	PAS domain
C0099_RS03460	SM00387	Histidine kinase-like ATPases
C0099_RS03460	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS03470	SM00562	C0099_RS03470
C0099_RS03480	SM00028	Tetratricopeptide repeats
C0099_RS03505	SM00564	beta-propeller repeat
C0099_RS03510	SM00382	ATPases associated with a variety of cellular activities
C0099_RS03525	SM00244	prohibitin homologues
C0099_RS03530	SM00244	prohibitin homologues
C0099_RS03545	SM00788	Adenylosuccinate synthetase
C0099_RS03555	SM00316	Ribosomal protein S1-like RNA-binding domain
C0099_RS03555	SM00357	Cold shock protein domain
C0099_RS03555	SM00955	C0099_RS03555
C0099_RS03560	SM00967	RNA 2'-O ribose methyltransferase substrate binding
C0099_RS03565	SM01012	C0099_RS03565
C0099_RS03580	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C0099_RS03595	SM00220	Serine/Threonine protein kinases, catalytic domain
C0099_RS03595	SM00331	Sigma factor PP2C-like phosphatases
C0099_RS03595	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
C0099_RS03625	SM00382	ATPases associated with a variety of cellular activities
C0099_RS03640	SM00382	ATPases associated with a variety of cellular activities
C0099_RS03670	SM00382	ATPases associated with a variety of cellular activities
C0099_RS03680	SM00493	C0099_RS03680
C0099_RS03735	SM00213	Ubiquitin homologues
C0099_RS03750	SM00382	ATPases associated with a variety of cellular activities
C0099_RS03770	SM00883	Chaperonin 10 Kd subunit
C0099_RS03780	SM00448	cheY-homologous receiver domain
C0099_RS03780	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS03785	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS03785	SM00387	Histidine kinase-like ATPases
C0099_RS03785	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS03825	SM00487	DEAD-like helicases superfamily
C0099_RS03885	SM00448	cheY-homologous receiver domain
C0099_RS03885	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS03890	SM00387	Histidine kinase-like ATPases
C0099_RS03895	SM00831	Cation transporter/ATPase, N-terminus
C0099_RS03900	SM00942	Primase C terminal 1 (PriCT-1)
C0099_RS03920	SM00937	C0099_RS03920
C0099_RS03960	SM00448	cheY-homologous receiver domain
C0099_RS03960	SM00850	LytTr DNA-binding domain
C0099_RS04000	SM01209	C0099_RS04000
C0099_RS04000	SM01210	C0099_RS04000
C0099_RS04005	SM00798	AICARFT/IMPCHase bienzyme
C0099_RS04005	SM00851	MGS-like domain
C0099_RS04025	SM01011	Aminopeptidase P, N-terminal domain
C0099_RS04055	SM00650	Ribosomal RNA adenine dimethylases
C0099_RS04075	SM00419	helix_turn_helix, cAMP Regulatory protein
C0099_RS04205	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
C0099_RS04210	SM00861	Transketolase, pyrimidine binding domain
C0099_RS04250	SM00852	Probable molybdopterin binding domain
C0099_RS04270	SM01004	Delta-aminolevulinic acid dehydratase
C0099_RS04280	SM00729	Elongator protein 3, MiaB family, Radical SAM
C0099_RS04280	SM00876	Biotin and Thiamin Synthesis associated domain
C0099_RS04315	SM00450	Rhodanese Homology Domain
C0099_RS04320	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C0099_RS04325	SM00855	Phosphoglycerate mutase family
C0099_RS04335	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C0099_RS04335	SM00245	tail specific protease
C0099_RS04385	SM00984	UDP binding domain
C0099_RS04405	SM00448	cheY-homologous receiver domain
C0099_RS04415	SM00834	Putative regulatory protein
C0099_RS04435	SM01091	Transporter associated domain
C0099_RS04445	SM00382	ATPases associated with a variety of cellular activities
C0099_RS04445	SM00962	SRP54-type protein, GTPase domain
C0099_RS04445	SM00963	SRP54-type protein, helical bundle domain
C0099_RS04455	SM00852	Probable molybdopterin binding domain
C0099_RS04480	SM00400	zinc finger
C0099_RS04480	SM00493	C0099_RS04480
C0099_RS04480	SM00766	DNA primase DnaG DnaB-binding
C0099_RS04500	SM01207	C0099_RS04500
C0099_RS04505	SM00905	Dihydroneopterin aldolase
C0099_RS04510	SM00528	Domain in histone-like proteins of HNS family
C0099_RS04565	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS04565	SM00091	PAS domain
C0099_RS04565	SM00267	diguanylate cyclase
C0099_RS04575	SM00829	Enoylreductase
C0099_RS04580	SM00481	DNA polymerase alpha chain like domain
C0099_RS04675	SM00925	MltA specific insert domain
C0099_RS04720	SM00382	ATPases associated with a variety of cellular activities
C0099_RS04720	SM00448	cheY-homologous receiver domain
C0099_RS04725	SM00387	Histidine kinase-like ATPases
C0099_RS04725	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS04735	SM01230	C0099_RS04735
C0099_RS04745	SM00450	Rhodanese Homology Domain
C0099_RS04760	SM00155	Phospholipase D. Active site motifs.
C0099_RS04765	SM00881	CoA binding domain
C0099_RS04790	SM01400	C0099_RS04790
C0099_RS04810	SM00028	Tetratricopeptide repeats
C0099_RS04815	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
C0099_RS04815	SM01232	C0099_RS04815
C0099_RS04850	SM00382	ATPases associated with a variety of cellular activities
C0099_RS04850	SM00962	SRP54-type protein, GTPase domain
C0099_RS04850	SM00963	SRP54-type protein, helical bundle domain
C0099_RS04855	SM00382	ATPases associated with a variety of cellular activities
C0099_RS04925	SM00248	ankyrin repeats
C0099_RS04940	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C0099_RS04950	SM00729	Elongator protein 3, MiaB family, Radical SAM
C0099_RS05025	SM00487	DEAD-like helicases superfamily
C0099_RS05025	SM00490	helicase superfamily c-terminal domain
C0099_RS05030	SM00226	Low molecular weight phosphatase family
C0099_RS05035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS05035	SM00895	C0099_RS05035
C0099_RS05060	SM00316	Ribosomal protein S1-like RNA-binding domain
C0099_RS05065	SM00363	S4 RNA-binding domain
C0099_RS05100	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
C0099_RS05105	SM00822	C0099_RS05105
C0099_RS05115	SM00825	Beta-ketoacyl synthase
C0099_RS05150	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C0099_RS05175	SM00358	Double-stranded RNA binding motif
C0099_RS05175	SM00535	Ribonuclease III family
C0099_RS05205	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C0099_RS05205	SM00465	GIY-YIG type nucleases (URI domain)
C0099_RS05215	SM00052	Putative diguanylate phosphodiesterase
C0099_RS05215	SM00091	PAS domain
C0099_RS05215	SM00267	diguanylate cyclase
C0099_RS05225	SM00267	diguanylate cyclase
C0099_RS05250	SM00138	Methyltransferase, chemotaxis proteins 
C0099_RS05260	SM00260	Two component signalling adaptor domain
C0099_RS05260	SM00448	cheY-homologous receiver domain
C0099_RS05265	SM00260	Two component signalling adaptor domain
C0099_RS05265	SM00448	cheY-homologous receiver domain
C0099_RS05270	SM00448	cheY-homologous receiver domain
C0099_RS05280	SM00073	Histidine Phosphotransfer domain
C0099_RS05280	SM00260	Two component signalling adaptor domain
C0099_RS05280	SM00387	Histidine kinase-like ATPases
C0099_RS05280	SM01231	C0099_RS05280
C0099_RS05485	SM00831	Cation transporter/ATPase, N-terminus
C0099_RS05535	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS05535	SM00091	PAS domain
C0099_RS05535	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C0099_RS05625	SM00342	helix_turn_helix, arabinose operon control protein
C0099_RS05655	SM00382	ATPases associated with a variety of cellular activities
C0099_RS05755	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS05755	SM00091	PAS domain
C0099_RS05755	SM00387	Histidine kinase-like ATPases
C0099_RS05755	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS05755	SM00448	cheY-homologous receiver domain
C0099_RS05760	SM00448	cheY-homologous receiver domain
C0099_RS05760	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C0099_RS05840	SM00357	Cold shock protein domain
C0099_RS05850	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS05860	SM00729	Elongator protein 3, MiaB family, Radical SAM
C0099_RS05875	SM00116	Domain in cystathionine beta-synthase and other proteins.
C0099_RS05875	SM01091	Transporter associated domain
C0099_RS05900	SM00563	Phosphate acyltransferases
C0099_RS05935	SM00116	Domain in cystathionine beta-synthase and other proteins.
C0099_RS05940	SM00382	ATPases associated with a variety of cellular activities
C0099_RS05970	SM00382	ATPases associated with a variety of cellular activities
C0099_RS06070	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C0099_RS06085	SM00881	CoA binding domain
C0099_RS06090	SM00240	Forkhead associated domain
C0099_RS06095	SM00849	Metallo-beta-lactamase superfamily
C0099_RS06150	SM00341	Helicase and RNase D C-terminal
C0099_RS06150	SM00487	DEAD-like helicases superfamily
C0099_RS06150	SM00490	helicase superfamily c-terminal domain
C0099_RS06150	SM00956	C0099_RS06150
C0099_RS06165	SM00422	helix_turn_helix, mercury resistance
C0099_RS06295	SM00434	DNA Topoisomerase IV
C0099_RS06305	SM00830	Chorismate mutase type II
C0099_RS06325	SM00316	Ribosomal protein S1-like RNA-binding domain
C0099_RS06330	SM00411	bacterial (prokaryotic) histone like domain
C0099_RS06340	SM00028	Tetratricopeptide repeats
C0099_RS06375	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
C0099_RS06400	SM00873	B3/4 domain
C0099_RS06400	SM00874	tRNA synthetase B5 domain
C0099_RS06400	SM00896	Ferredoxin-fold anticodon binding domain
C0099_RS06405	SM00411	bacterial (prokaryotic) histone like domain
C0099_RS06410	SM00422	helix_turn_helix, mercury resistance
C0099_RS06425	SM00062	Bacterial periplasmic substrate-binding proteins
C0099_RS06440	SM00062	Bacterial periplasmic substrate-binding proteins
C0099_RS06440	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
C0099_RS06450	SM00382	ATPases associated with a variety of cellular activities
C0099_RS06490	SM00479	C0099_RS06490
C0099_RS06505	SM00924	MgtE intracellular N domain
C0099_RS06510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C0099_RS06515	SM00387	Histidine kinase-like ATPases
C0099_RS06515	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS06520	SM00448	cheY-homologous receiver domain
C0099_RS06525	SM00052	Putative diguanylate phosphodiesterase
C0099_RS06525	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C0099_RS06525	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS06525	SM00091	PAS domain
C0099_RS06525	SM00267	diguanylate cyclase
C0099_RS06525	SM00448	cheY-homologous receiver domain
C0099_RS06555	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS06555	SM00091	PAS domain
C0099_RS06555	SM00387	Histidine kinase-like ATPases
C0099_RS06555	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS06560	SM00421	helix_turn_helix, Lux Regulon
C0099_RS06560	SM00448	cheY-homologous receiver domain
C0099_RS06565	SM01091	Transporter associated domain
C0099_RS06575	SM01001	AIR carboxylase
C0099_RS06600	SM00382	ATPases associated with a variety of cellular activities
C0099_RS06625	SM00857	Resolvase, N terminal domain
C0099_RS06675	SM00382	ATPases associated with a variety of cellular activities
C0099_RS06750	SM00448	cheY-homologous receiver domain
C0099_RS06750	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS06755	SM00387	Histidine kinase-like ATPases
C0099_RS06760	SM00831	Cation transporter/ATPase, N-terminus
C0099_RS06770	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS06780	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS06790	SM00729	Elongator protein 3, MiaB family, Radical SAM
C0099_RS06810	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C0099_RS06815	SM00849	Metallo-beta-lactamase superfamily
C0099_RS06845	SM00855	Phosphoglycerate mutase family
C0099_RS06870	SM00852	Probable molybdopterin binding domain
C0099_RS06895	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS06895	SM00387	Histidine kinase-like ATPases
C0099_RS06895	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS06900	SM00448	cheY-homologous receiver domain
C0099_RS06900	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS06905	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
C0099_RS06910	SM00052	Putative diguanylate phosphodiesterase
C0099_RS06930	SM00116	Domain in cystathionine beta-synthase and other proteins.
C0099_RS06955	SM00900	C0099_RS06955
C0099_RS06995	SM00855	Phosphoglycerate mutase family
C0099_RS07000	SM00880	C0099_RS07000
C0099_RS07000	SM01118	C0099_RS07000
C0099_RS07070	SM00859	Semialdehyde dehydrogenase, NAD binding domain
C0099_RS07085	SM00363	S4 RNA-binding domain
C0099_RS07120	SM00357	Cold shock protein domain
C0099_RS07120	SM00382	ATPases associated with a variety of cellular activities
C0099_RS07120	SM00959	Rho termination factor, N-terminal domain
C0099_RS07170	SM01329	C0099_RS07170
C0099_RS07175	SM00859	Semialdehyde dehydrogenase, NAD binding domain
C0099_RS07255	SM00840	C0099_RS07255
C0099_RS07265	SM00271	DnaJ molecular chaperone homology domain
C0099_RS07280	SM00100	Cyclic nucleotide-monophosphate binding domain
C0099_RS07280	SM00220	Serine/Threonine protein kinases, catalytic domain
C0099_RS07325	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
C0099_RS07330	SM00851	MGS-like domain
C0099_RS07330	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
C0099_RS07345	SM01103	C0099_RS07345
C0099_RS07370	SM00382	ATPases associated with a variety of cellular activities
C0099_RS07400	SM00382	ATPases associated with a variety of cellular activities
C0099_RS07430	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C0099_RS07475	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C0099_RS07485	SM00935	Outer membrane protein (OmpH-like)
C0099_RS07520	SM00967	RNA 2'-O ribose methyltransferase substrate binding
C0099_RS07535	SM00481	DNA polymerase alpha chain like domain
C0099_RS07565	SM00363	S4 RNA-binding domain
C0099_RS07575	SM00316	Ribosomal protein S1-like RNA-binding domain
C0099_RS07595	SM01387	C0099_RS07595
C0099_RS07600	SM00316	Ribosomal protein S1-like RNA-binding domain
C0099_RS07600	SM00322	K homology RNA-binding domain
C0099_RS07725	SM00481	DNA polymerase alpha chain like domain
C0099_RS07730	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C0099_RS07775	SM00267	diguanylate cyclase
C0099_RS07775	SM00448	cheY-homologous receiver domain
C0099_RS07780	SM00849	Metallo-beta-lactamase superfamily
C0099_RS07795	SM00479	C0099_RS07795
C0099_RS07805	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
C0099_RS07805	SM00534	ATPase domain of DNA mismatch repair MUTS family
C0099_RS07850	SM00271	DnaJ molecular chaperone homology domain
C0099_RS07900	SM00771	ZipA, C-terminal domain (FtsZ-binding)
C0099_RS07905	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C0099_RS07905	SM00292	breast cancer carboxy-terminal domain
C0099_RS07905	SM00532	Ligase N family
C0099_RS07915	SM00838	Elongation factor G C-terminus
C0099_RS07935	SM00382	ATPases associated with a variety of cellular activities
C0099_RS07945	SM00986	Uracil DNA glycosylase superfamily
C0099_RS07945	SM00987	UreE urease accessory protein, C-terminal domain 
C0099_RS07965	SM00448	cheY-homologous receiver domain
C0099_RS07965	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS07970	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS07970	SM00387	Histidine kinase-like ATPases
C0099_RS07970	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS08000	SM00893	Electron transfer flavoprotein domain
C0099_RS08005	SM00893	Electron transfer flavoprotein domain
C0099_RS08025	SM00954	Region found in RelA / SpoT proteins
C0099_RS08070	SM00729	Elongator protein 3, MiaB family, Radical SAM
C0099_RS08085	SM00487	DEAD-like helicases superfamily
C0099_RS08085	SM00490	helicase superfamily c-terminal domain
C0099_RS08085	SM00982	C0099_RS08085
C0099_RS08085	SM01058	CarD-like/TRCF domain
C0099_RS08145	SM00091	PAS domain
C0099_RS08145	SM00267	diguanylate cyclase
C0099_RS08155	SM00966	SpoVT / AbrB like domain 
C0099_RS08170	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS08180	SM00382	ATPases associated with a variety of cellular activities
C0099_RS08200	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
C0099_RS08205	SM00382	ATPases associated with a variety of cellular activities
C0099_RS08240	SM00331	Sigma factor PP2C-like phosphatases
C0099_RS08260	SM00769	Water Stress and Hypersensitive response
C0099_RS08310	SM00382	ATPases associated with a variety of cellular activities
C0099_RS08350	SM00900	C0099_RS08350
C0099_RS08360	SM00478	endonuclease III
C0099_RS08360	SM00525	C0099_RS08360
C0099_RS08390	SM00347	helix_turn_helix multiple antibiotic resistance protein
C0099_RS08400	SM00387	Histidine kinase-like ATPases
C0099_RS08450	SM00267	diguanylate cyclase
C0099_RS08460	SM00822	C0099_RS08460
C0099_RS08470	SM00344	helix_turn_helix ASNC type
C0099_RS08520	SM00062	Bacterial periplasmic substrate-binding proteins
C0099_RS08520	SM00387	Histidine kinase-like ATPases
C0099_RS08520	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS08520	SM00448	cheY-homologous receiver domain
C0099_RS08525	SM00052	Putative diguanylate phosphodiesterase
C0099_RS08525	SM00267	diguanylate cyclase
C0099_RS08525	SM00448	cheY-homologous receiver domain
C0099_RS08530	SM00267	diguanylate cyclase
C0099_RS08610	SM00421	helix_turn_helix, Lux Regulon
C0099_RS08610	SM00448	cheY-homologous receiver domain
C0099_RS08615	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS08615	SM00387	Histidine kinase-like ATPases
C0099_RS08640	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C0099_RS08675	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C0099_RS08675	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS08680	SM00091	PAS domain
C0099_RS08680	SM00387	Histidine kinase-like ATPases
C0099_RS08680	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS08680	SM00448	cheY-homologous receiver domain
C0099_RS08680	SM01079	C0099_RS08680
C0099_RS08685	SM00052	Putative diguanylate phosphodiesterase
C0099_RS08685	SM00448	cheY-homologous receiver domain
C0099_RS08700	SM00382	ATPases associated with a variety of cellular activities
C0099_RS08705	SM00710	Parallel beta-helix repeats
C0099_RS08705	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
C0099_RS08715	SM00900	C0099_RS08715
C0099_RS08720	SM00347	helix_turn_helix multiple antibiotic resistance protein
C0099_RS08760	SM00100	Cyclic nucleotide-monophosphate binding domain
C0099_RS08760	SM00419	helix_turn_helix, cAMP Regulatory protein
C0099_RS08775	SM00382	ATPases associated with a variety of cellular activities
C0099_RS08820	SM00327	von Willebrand factor (vWF) type A domain
C0099_RS08840	SM00382	ATPases associated with a variety of cellular activities
C0099_RS08855	SM00966	SpoVT / AbrB like domain 
C0099_RS08860	SM00450	Rhodanese Homology Domain
C0099_RS08875	SM00881	CoA binding domain
C0099_RS08885	SM00316	Ribosomal protein S1-like RNA-binding domain
C0099_RS08885	SM00732	Likely ribonuclease with RNase H fold.
C0099_RS08955	SM00411	bacterial (prokaryotic) histone like domain
C0099_RS08960	SM00382	ATPases associated with a variety of cellular activities
C0099_RS08960	SM00464	Found in ATP-dependent protease La (LON)
C0099_RS08965	SM00382	ATPases associated with a variety of cellular activities
C0099_RS08965	SM00994	ClpX C4-type zinc finger
C0099_RS08965	SM01086	C-terminal, D2-small domain, of ClpB protein
C0099_RS08980	SM00763	PrkA AAA domain
C0099_RS09040	SM00670	Large family of predicted nucleotide-binding domains
C0099_RS09045	SM00116	Domain in cystathionine beta-synthase and other proteins.
C0099_RS09085	SM01091	Transporter associated domain
C0099_RS09090	SM01322	C0099_RS09090
C0099_RS09155	SM01192	C0099_RS09155
C0099_RS09155	SM01193	C0099_RS09155
C0099_RS09210	SM01211	C0099_RS09210
C0099_RS09250	SM00849	Metallo-beta-lactamase superfamily
C0099_RS09260	SM00382	ATPases associated with a variety of cellular activities
C0099_RS09280	SM00937	C0099_RS09280
C0099_RS09320	SM00327	von Willebrand factor (vWF) type A domain
C0099_RS09325	SM00487	DEAD-like helicases superfamily
C0099_RS09325	SM00490	helicase superfamily c-terminal domain
C0099_RS09330	SM00267	diguanylate cyclase
C0099_RS09340	SM00487	DEAD-like helicases superfamily
C0099_RS09340	SM00491	C0099_RS09340
C0099_RS09375	SM00861	Transketolase, pyrimidine binding domain
C0099_RS09410	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS09410	SM00866	C0099_RS09410
C0099_RS09425	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
C0099_RS09425	SM00240	Forkhead associated domain
C0099_RS09445	SM00357	Cold shock protein domain
C0099_RS09455	SM00382	ATPases associated with a variety of cellular activities
C0099_RS09455	SM01086	C-terminal, D2-small domain, of ClpB protein
C0099_RS09465	SM00267	diguanylate cyclase
C0099_RS09465	SM00448	cheY-homologous receiver domain
C0099_RS09470	SM00829	Enoylreductase
C0099_RS09480	SM00382	ATPases associated with a variety of cellular activities
C0099_RS09530	SM00729	Elongator protein 3, MiaB family, Radical SAM
C0099_RS09540	SM00822	C0099_RS09540
C0099_RS09545	SM00822	C0099_RS09545
C0099_RS09565	SM00363	S4 RNA-binding domain
C0099_RS09585	SM00829	Enoylreductase
C0099_RS09595	SM00052	Putative diguanylate phosphodiesterase
C0099_RS09595	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS09595	SM00091	PAS domain
C0099_RS09595	SM00267	diguanylate cyclase
C0099_RS09595	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS09605	SM00091	PAS domain
C0099_RS09660	SM00853	MutL C terminal dimerisation domain
C0099_RS09660	SM01340	C0099_RS09660
C0099_RS09690	SM00116	Domain in cystathionine beta-synthase and other proteins.
C0099_RS09695	SM00507	HNH nucleases
C0099_RS09705	SM00344	helix_turn_helix ASNC type
C0099_RS09715	SM00917	LeuA allosteric (dimerisation) domain
C0099_RS09720	SM00387	Histidine kinase-like ATPases
C0099_RS09720	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS09725	SM00448	cheY-homologous receiver domain
C0099_RS09725	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS09735	SM00822	C0099_RS09735
C0099_RS09740	SM01236	C0099_RS09740
C0099_RS09810	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS09810	SM00387	Histidine kinase-like ATPases
C0099_RS09810	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS09815	SM00382	ATPases associated with a variety of cellular activities
C0099_RS09815	SM00448	cheY-homologous receiver domain
C0099_RS09890	SM01092	CO dehydrogenase flavoprotein C-terminal domain
C0099_RS09895	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
C0099_RS09900	SM00342	helix_turn_helix, arabinose operon control protein
C0099_RS09925	SM00090	RIO-like kinase
C0099_RS09950	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS09970	SM00882	Coenzyme A transferase
C0099_RS09975	SM00382	ATPases associated with a variety of cellular activities
C0099_RS09980	SM00382	ATPases associated with a variety of cellular activities
C0099_RS10020	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C0099_RS10020	SM00450	Rhodanese Homology Domain
C0099_RS10040	SM00028	Tetratricopeptide repeats
C0099_RS10080	SM00857	Resolvase, N terminal domain
C0099_RS10085	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C0099_RS10095	SM00226	Low molecular weight phosphatase family
C0099_RS10165	SM00116	Domain in cystathionine beta-synthase and other proteins.
C0099_RS10165	SM01240	C0099_RS10165
C0099_RS10210	SM00052	Putative diguanylate phosphodiesterase
C0099_RS10210	SM00267	diguanylate cyclase
C0099_RS10210	SM01079	C0099_RS10210
C0099_RS10215	SM00382	ATPases associated with a variety of cellular activities
C0099_RS10215	SM01086	C-terminal, D2-small domain, of ClpB protein
C0099_RS10235	SM00852	Probable molybdopterin binding domain
C0099_RS10280	SM01329	C0099_RS10280
C0099_RS10295	SM00487	DEAD-like helicases superfamily
C0099_RS10295	SM00490	helicase superfamily c-terminal domain
C0099_RS10420	SM01034	Sensors of blue-light using FAD
C0099_RS10430	SM00382	ATPases associated with a variety of cellular activities
C0099_RS10490	SM00267	diguanylate cyclase
C0099_RS10505	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS10505	SM00331	Sigma factor PP2C-like phosphatases
C0099_RS10515	SM00116	Domain in cystathionine beta-synthase and other proteins.
C0099_RS10560	SM00091	PAS domain
C0099_RS10560	SM00267	diguanylate cyclase
C0099_RS10575	SM00382	ATPases associated with a variety of cellular activities
C0099_RS10585	SM00267	diguanylate cyclase
C0099_RS10590	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C0099_RS10590	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS10595	SM00052	Putative diguanylate phosphodiesterase
C0099_RS10595	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C0099_RS10595	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS10595	SM00091	PAS domain
C0099_RS10595	SM00267	diguanylate cyclase
C0099_RS10620	SM00382	ATPases associated with a variety of cellular activities
C0099_RS10630	SM00382	ATPases associated with a variety of cellular activities
C0099_RS10630	SM00843	C0099_RS10630
C0099_RS10645	SM00100	Cyclic nucleotide-monophosphate binding domain
C0099_RS10645	SM00419	helix_turn_helix, cAMP Regulatory protein
C0099_RS10655	SM00463	Small MutS-related domain
C0099_RS10660	SM00938	Nitrogen regulatory protein P-II
C0099_RS10690	SM00729	Elongator protein 3, MiaB family, Radical SAM
C0099_RS10695	SM00100	Cyclic nucleotide-monophosphate binding domain
C0099_RS10695	SM00419	helix_turn_helix, cAMP Regulatory protein
C0099_RS10700	SM00849	Metallo-beta-lactamase superfamily
C0099_RS10700	SM01027	Beta-Casp domain
C0099_RS10755	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS10755	SM00895	C0099_RS10755
C0099_RS10805	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
C0099_RS10810	SM00829	Enoylreductase
C0099_RS10815	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C0099_RS10815	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS10815	SM01049	C0099_RS10815
C0099_RS10855	SM00460	Transglutaminase/protease-like homologues
C0099_RS10895	SM00342	helix_turn_helix, arabinose operon control protein
C0099_RS11085	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS11110	SM01252	C0099_RS11110
C0099_RS11235	SM00838	Elongation factor G C-terminus
C0099_RS11235	SM00889	Elongation factor G, domain IV
C0099_RS11290	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C0099_RS11335	SM00363	S4 RNA-binding domain
C0099_RS11380	SM00479	C0099_RS11380
C0099_RS11480	SM00564	beta-propeller repeat
C0099_RS11585	SM00267	diguanylate cyclase
C0099_RS11680	SM00382	ATPases associated with a variety of cellular activities
C0099_RS11680	SM00448	cheY-homologous receiver domain
C0099_RS11685	SM00387	Histidine kinase-like ATPases
C0099_RS11685	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS11705	SM00382	ATPases associated with a variety of cellular activities
C0099_RS11770	SM00047	Lysozyme subfamily 2
C0099_RS11815	SM00858	C0099_RS11815
C0099_RS11830	SM00387	Histidine kinase-like ATPases
C0099_RS11830	SM00433	TopoisomeraseII
C0099_RS11840	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS11845	SM00434	DNA Topoisomerase IV
C0099_RS11875	SM00382	ATPases associated with a variety of cellular activities
C0099_RS11875	SM00962	SRP54-type protein, GTPase domain
C0099_RS11915	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
C0099_RS11925	SM01130	C0099_RS11925
C0099_RS11935	SM00382	ATPases associated with a variety of cellular activities
C0099_RS11945	SM00460	Transglutaminase/protease-like homologues
C0099_RS11960	SM00257	Lysin motif
C0099_RS11980	SM00357	Cold shock protein domain
C0099_RS12015	SM00487	DEAD-like helicases superfamily
C0099_RS12015	SM00490	helicase superfamily c-terminal domain
C0099_RS12040	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
C0099_RS12040	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
C0099_RS12060	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS12060	SM00895	C0099_RS12060
C0099_RS12095	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS12120	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
C0099_RS12135	SM00450	Rhodanese Homology Domain
C0099_RS12155	SM00646	C0099_RS12155
C0099_RS12160	SM00904	Riboflavin kinase
C0099_RS12200	SM00861	Transketolase, pyrimidine binding domain
C0099_RS12225	SM00957	SecA DEAD-like domain
C0099_RS12225	SM00958	SecA preprotein cross-linking domain
C0099_RS12245	SM00864	Tubulin/FtsZ family, GTPase domain
C0099_RS12245	SM00865	Tubulin/FtsZ family, C-terminal domain
C0099_RS12250	SM00842	Cell division protein FtsA
C0099_RS12350	SM00749	bacterial OsmY and nodulation domain
C0099_RS12380	SM00878	Biotin carboxylase C-terminal domain
C0099_RS12410	SM00563	Phosphate acyltransferases
C0099_RS12440	SM00450	Rhodanese Homology Domain
C0099_RS12445	SM00052	Putative diguanylate phosphodiesterase
C0099_RS12445	SM00267	diguanylate cyclase
C0099_RS12460	SM00267	diguanylate cyclase
C0099_RS12480	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C0099_RS12490	SM00382	ATPases associated with a variety of cellular activities
C0099_RS12510	SM00267	diguanylate cyclase
C0099_RS12570	SM00382	ATPases associated with a variety of cellular activities
C0099_RS12635	SM00091	PAS domain
C0099_RS12635	SM00267	diguanylate cyclase
C0099_RS12640	SM00382	ATPases associated with a variety of cellular activities
C0099_RS12825	SM00849	Metallo-beta-lactamase superfamily
C0099_RS12825	SM01027	Beta-Casp domain
C0099_RS12835	SM00028	Tetratricopeptide repeats
C0099_RS12840	SM00028	Tetratricopeptide repeats
C0099_RS12845	SM00028	Tetratricopeptide repeats
C0099_RS12850	SM00028	Tetratricopeptide repeats
C0099_RS12870	SM00382	ATPases associated with a variety of cellular activities
C0099_RS12945	SM00382	ATPases associated with a variety of cellular activities
C0099_RS12995	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
C0099_RS12995	SM00474	3'-5' exonuclease
C0099_RS12995	SM00475	5'-3' exonuclease
C0099_RS12995	SM00482	DNA polymerase A domain
C0099_RS13040	SM00316	Ribosomal protein S1-like RNA-binding domain
C0099_RS13055	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C0099_RS13060	SM00382	ATPases associated with a variety of cellular activities
C0099_RS13075	SM00091	PAS domain
C0099_RS13075	SM00387	Histidine kinase-like ATPases
C0099_RS13075	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS13080	SM00382	ATPases associated with a variety of cellular activities
C0099_RS13080	SM00448	cheY-homologous receiver domain
C0099_RS13165	SM00382	ATPases associated with a variety of cellular activities
C0099_RS13200	SM00382	ATPases associated with a variety of cellular activities
C0099_RS13200	SM00448	cheY-homologous receiver domain
C0099_RS13205	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS13205	SM00387	Histidine kinase-like ATPases
C0099_RS13205	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS13225	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS13225	SM00387	Histidine kinase-like ATPases
C0099_RS13225	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS13230	SM00448	cheY-homologous receiver domain
C0099_RS13230	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS13240	SM00422	helix_turn_helix, mercury resistance
C0099_RS13330	SM00155	Phospholipase D. Active site motifs.
C0099_RS13335	SM00422	helix_turn_helix, mercury resistance
C0099_RS13370	SM00729	Elongator protein 3, MiaB family, Radical SAM
C0099_RS13375	SM00387	Histidine kinase-like ATPases
C0099_RS13380	SM00421	helix_turn_helix, Lux Regulon
C0099_RS13380	SM00448	cheY-homologous receiver domain
C0099_RS13385	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C0099_RS13385	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS13390	SM00052	Putative diguanylate phosphodiesterase
C0099_RS13390	SM00091	PAS domain
C0099_RS13390	SM00267	diguanylate cyclase
C0099_RS13395	SM00052	Putative diguanylate phosphodiesterase
C0099_RS13395	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS13395	SM00091	PAS domain
C0099_RS13395	SM00267	diguanylate cyclase
C0099_RS13405	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C0099_RS13405	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS13460	SM01400	C0099_RS13460
C0099_RS13465	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
C0099_RS13495	SM01126	C0099_RS13495
C0099_RS13720	SM00411	bacterial (prokaryotic) histone like domain
C0099_RS13780	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS13810	SM00382	ATPases associated with a variety of cellular activities
C0099_RS13820	SM00382	ATPases associated with a variety of cellular activities
C0099_RS13895	SM00240	Forkhead associated domain
C0099_RS13965	SM00052	Putative diguanylate phosphodiesterase
C0099_RS13995	SM00382	ATPases associated with a variety of cellular activities
C0099_RS14000	SM00382	ATPases associated with a variety of cellular activities
C0099_RS14020	SM00267	diguanylate cyclase
C0099_RS14035	SM00331	Sigma factor PP2C-like phosphatases
C0099_RS14040	SM00062	Bacterial periplasmic substrate-binding proteins
C0099_RS14045	SM00091	PAS domain
C0099_RS14045	SM00387	Histidine kinase-like ATPases
C0099_RS14045	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS14045	SM00448	cheY-homologous receiver domain
C0099_RS14050	SM00448	cheY-homologous receiver domain
C0099_RS14050	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS14135	SM01329	C0099_RS14135
C0099_RS14150	SM00796	Allophanate hydrolase subunit 1
C0099_RS14155	SM00797	Allophanate hydrolase subunit 2
C0099_RS14235	SM00382	ATPases associated with a variety of cellular activities
C0099_RS14340	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS14390	SM01018	B12 binding domain
C0099_RS14410	SM00382	ATPases associated with a variety of cellular activities
C0099_RS14420	SM00450	Rhodanese Homology Domain
C0099_RS14430	SM00382	ATPases associated with a variety of cellular activities
C0099_RS14475	SM00938	Nitrogen regulatory protein P-II
C0099_RS14490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS14490	SM00387	Histidine kinase-like ATPases
C0099_RS14490	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS14495	SM00448	cheY-homologous receiver domain
C0099_RS14495	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS14515	SM00382	ATPases associated with a variety of cellular activities
C0099_RS14545	SM00822	C0099_RS14545
C0099_RS14585	SM00072	Guanylate kinase homologues.
C0099_RS14640	SM00829	Enoylreductase
C0099_RS14675	SM00382	ATPases associated with a variety of cellular activities
C0099_RS14730	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS14730	SM00895	C0099_RS14730
C0099_RS14790	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS14805	SM00530	Helix-turn-helix XRE-family like proteins 
C0099_RS14830	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C0099_RS14830	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
C0099_RS14835	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
C0099_RS14890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS14890	SM00895	C0099_RS14890
C0099_RS14935	SM00448	cheY-homologous receiver domain
C0099_RS14940	SM00387	Histidine kinase-like ATPases
C0099_RS14945	SM00100	Cyclic nucleotide-monophosphate binding domain
C0099_RS14945	SM00419	helix_turn_helix, cAMP Regulatory protein
C0099_RS14965	SM00749	bacterial OsmY and nodulation domain
C0099_RS14990	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS14990	SM00895	C0099_RS14990
C0099_RS15025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C0099_RS15025	SM00895	C0099_RS15025
C0099_RS15050	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
C0099_RS15085	SM00052	Putative diguanylate phosphodiesterase
C0099_RS15085	SM00267	diguanylate cyclase
C0099_RS15085	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS15095	SM00062	Bacterial periplasmic substrate-binding proteins
C0099_RS15125	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C0099_RS15125	SM00091	PAS domain
C0099_RS15125	SM00387	Histidine kinase-like ATPases
C0099_RS15125	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS15160	SM00382	ATPases associated with a variety of cellular activities
C0099_RS15200	SM00729	Elongator protein 3, MiaB family, Radical SAM
C0099_RS15220	SM00936	Penicillin-binding protein 5, C-terminal domain 
C0099_RS15265	SM00845	GatB domain
C0099_RS15295	SM00091	PAS domain
C0099_RS15295	SM00387	Histidine kinase-like ATPases
C0099_RS15295	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS15300	SM00448	cheY-homologous receiver domain
C0099_RS15300	SM00862	Transcriptional regulatory protein, C terminal
C0099_RS15315	SM00978	C0099_RS15315
C0099_RS15335	SM00382	ATPases associated with a variety of cellular activities
C0099_RS15380	SM00470	ParB-like nuclease domain
C0099_RS15395	SM01228	C0099_RS15395
C0099_RS15480	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C0099_RS15510	SM00382	ATPases associated with a variety of cellular activities
C0099_RS15520	SM00248	ankyrin repeats
C0099_RS15535	SM00382	ATPases associated with a variety of cellular activities
C0099_RS15535	SM00448	cheY-homologous receiver domain
C0099_RS15540	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS15540	SM00387	Histidine kinase-like ATPases
C0099_RS15540	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS15560	SM00257	Lysin motif
C0099_RS15575	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
C0099_RS15575	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
C0099_RS15575	SM00493	C0099_RS15575
C0099_RS15600	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C0099_RS15615	SM00382	ATPases associated with a variety of cellular activities
C0099_RS15655	SM00945	ProQ/FINO family
C0099_RS15675	SM00382	ATPases associated with a variety of cellular activities
C0099_RS15710	SM00052	Putative diguanylate phosphodiesterase
C0099_RS15710	SM00267	diguanylate cyclase
C0099_RS15725	SM00947	Carbonic anhydrase
C0099_RS15735	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C0099_RS15735	SM00267	diguanylate cyclase
C0099_RS15740	SM00487	DEAD-like helicases superfamily
C0099_RS15740	SM00490	helicase superfamily c-terminal domain
C0099_RS15760	SM00448	cheY-homologous receiver domain
C0099_RS15765	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C0099_RS15765	SM00387	Histidine kinase-like ATPases
C0099_RS15765	SM00388	His Kinase A (phosphoacceptor) domain
C0099_RS15795	SM01234	C0099_RS15795
