LL3_RS00005 SM00382 ATPases associated with a variety of cellular activities LL3_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain LL3_RS00010 SM00480 DNA polymerase III beta subunit LL3_RS00030 SM00387 Histidine kinase-like ATPases LL3_RS00030 SM00433 TopoisomeraseII LL3_RS00035 SM00434 DNA Topoisomerase IV LL3_RS00070 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS00070 SM01240 LL3_RS00070 LL3_RS00075 SM00936 Penicillin-binding protein 5, C-terminal domain LL3_RS00115 SM00257 Lysin motif LL3_RS00115 SM00636 LL3_RS00115 LL3_RS00130 SM00382 ATPases associated with a variety of cellular activities LL3_RS00140 SM00493 LL3_RS00140 LL3_RS00235 SM00465 GIY-YIG type nucleases (URI domain) LL3_RS00245 SM00966 SpoVT / AbrB like domain LL3_RS00260 SM01208 LL3_RS00260 LL3_RS00265 SM00493 LL3_RS00265 LL3_RS00270 SM00650 Ribosomal RNA adenine dimethylases LL3_RS00315 SM01400 LL3_RS00315 LL3_RS00335 SM00487 DEAD-like helicases superfamily LL3_RS00335 SM00490 helicase superfamily c-terminal domain LL3_RS00335 SM00982 LL3_RS00335 LL3_RS00335 SM01058 CarD-like/TRCF domain LL3_RS00340 SM00966 SpoVT / AbrB like domain LL3_RS00355 SM00363 S4 RNA-binding domain LL3_RS00375 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_RS00390 SM00331 Sigma factor PP2C-like phosphatases LL3_RS00390 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain LL3_RS00400 SM00220 Serine/Threonine protein kinases, catalytic domain LL3_RS00405 SM00977 TilS substrate C-terminal domain LL3_RS00415 SM00382 ATPases associated with a variety of cellular activities LL3_RS00460 SM00905 Dihydroneopterin aldolase LL3_RS00470 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS00515 SM00382 ATPases associated with a variety of cellular activities LL3_RS00515 SM01086 C-terminal, D2-small domain, of ClpB protein LL3_RS00520 SM00382 ATPases associated with a variety of cellular activities LL3_RS00530 SM00670 Large family of predicted nucleotide-binding domains LL3_RS00555 SM00840 LL3_RS00555 LL3_RS00560 SM00535 Ribonuclease III family LL3_RS00565 SM00967 RNA 2'-O ribose methyltransferase substrate binding LL3_RS00590 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. LL3_RS00590 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LL3_RS00595 SM00649 Ribosomal protein L11/L12 LL3_RS00625 SM00663 RNA polymerase I subunit A N-terminus LL3_RS00645 SM00838 Elongation factor G C-terminus LL3_RS00645 SM00889 Elongation factor G, domain IV LL3_RS00660 SM01403 LL3_RS00660 LL3_RS00680 SM01382 LL3_RS00680 LL3_RS00680 SM01383 LL3_RS00680 LL3_RS00695 SM00322 K homology RNA-binding domain LL3_RS00715 SM01374 LL3_RS00715 LL3_RS00720 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LL3_RS00775 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_RS00795 SM00662 RNA polymerases D LL3_RS00805 SM00382 ATPases associated with a variety of cellular activities LL3_RS00810 SM00382 ATPases associated with a variety of cellular activities LL3_RS00845 SM00646 LL3_RS00845 LL3_RS00860 SM01251 LL3_RS00860 LL3_RS00900 SM00829 Enoylreductase LL3_RS00935 SM00342 helix_turn_helix, arabinose operon control protein LL3_RS01070 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS01090 SM00421 helix_turn_helix, Lux Regulon LL3_RS01090 SM00448 cheY-homologous receiver domain LL3_RS01095 SM00382 ATPases associated with a variety of cellular activities LL3_RS01170 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS01205 SM00450 Rhodanese Homology Domain LL3_RS01240 SM00387 Histidine kinase-like ATPases LL3_RS01245 SM00448 cheY-homologous receiver domain LL3_RS01375 SM00028 Tetratricopeptide repeats LL3_RS01385 SM00642 Alpha-amylase domain LL3_RS01405 SM00382 ATPases associated with a variety of cellular activities LL3_RS01455 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS01455 SM00382 ATPases associated with a variety of cellular activities LL3_RS01500 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS01600 SM00833 Cobalamin synthesis protein cobW C-terminal domain LL3_RS01640 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LL3_RS01655 SM00823 Phosphopantetheine attachment site LL3_RS01660 SM00823 Phosphopantetheine attachment site LL3_RS01665 SM00823 Phosphopantetheine attachment site LL3_RS01690 SM00382 ATPases associated with a variety of cellular activities LL3_RS01700 SM00062 Bacterial periplasmic substrate-binding proteins LL3_RS01735 SM00710 Parallel beta-helix repeats LL3_RS01770 SM00062 Bacterial periplasmic substrate-binding proteins LL3_RS01780 SM00382 ATPases associated with a variety of cellular activities LL3_RS01795 SM00382 ATPases associated with a variety of cellular activities LL3_RS01805 SM00448 cheY-homologous receiver domain LL3_RS01805 SM00862 Transcriptional regulatory protein, C terminal LL3_RS01810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS01810 SM00387 Histidine kinase-like ATPases LL3_RS01810 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS01815 SM00028 Tetratricopeptide repeats LL3_RS01845 SM00382 ATPases associated with a variety of cellular activities LL3_RS01875 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_RS01880 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS01915 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_RS01965 SM00796 Allophanate hydrolase subunit 1 LL3_RS01970 SM00797 Allophanate hydrolase subunit 2 LL3_RS01975 SM00346 helix_turn_helix isocitrate lyase regulation LL3_RS02045 SM00344 helix_turn_helix ASNC type LL3_RS02050 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LL3_RS02050 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LL3_RS02050 SM00493 LL3_RS02050 LL3_RS02060 SM00267 diguanylate cyclase LL3_RS02095 SM00257 Lysin motif LL3_RS02115 SM00028 Tetratricopeptide repeats LL3_RS02190 SM00091 PAS domain LL3_RS02190 SM00387 Histidine kinase-like ATPases LL3_RS02195 SM00448 cheY-homologous receiver domain LL3_RS02210 SM00382 ATPases associated with a variety of cellular activities LL3_RS02255 SM00487 DEAD-like helicases superfamily LL3_RS02255 SM00490 helicase superfamily c-terminal domain LL3_RS02285 SM01005 Alanine racemase, C-terminal domain LL3_RS02310 SM00387 Histidine kinase-like ATPases LL3_RS02315 SM00331 Sigma factor PP2C-like phosphatases LL3_RS02335 SM00331 Sigma factor PP2C-like phosphatases LL3_RS02335 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain LL3_RS02340 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_RS02340 SM00732 Likely ribonuclease with RNase H fold. LL3_RS02345 SM00731 SprT homologues. LL3_RS02395 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS02420 SM00357 Cold shock protein domain LL3_RS02440 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS02490 SM00342 helix_turn_helix, arabinose operon control protein LL3_RS02490 SM00871 Bacterial transcription activator, effector binding domain LL3_RS02515 SM00829 Enoylreductase LL3_RS02520 SM00422 helix_turn_helix, mercury resistance LL3_RS02530 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS02555 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS02595 SM00382 ATPases associated with a variety of cellular activities LL3_RS02620 SM00825 Beta-ketoacyl synthase LL3_RS02625 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS02640 SM00422 helix_turn_helix, mercury resistance LL3_RS02660 SM01329 LL3_RS02660 LL3_RS02665 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS02665 SM00895 LL3_RS02665 LL3_RS02695 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS02695 SM00866 LL3_RS02695 LL3_RS02700 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS02700 SM00895 LL3_RS02700 LL3_RS02740 SM00829 Enoylreductase LL3_RS02810 SM00382 ATPases associated with a variety of cellular activities LL3_RS02820 SM00881 CoA binding domain LL3_RS02845 SM00883 Chaperonin 10 Kd subunit LL3_RS02875 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS02880 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS02900 SM01040 BRO family, N-terminal domain LL3_RS02940 SM00382 ATPases associated with a variety of cellular activities LL3_RS03140 SM00644 LL3_RS03140 LL3_RS03180 SM00028 Tetratricopeptide repeats LL3_RS03180 SM00382 ATPases associated with a variety of cellular activities LL3_RS03185 SM00829 Enoylreductase LL3_RS03240 SM00829 Enoylreductase LL3_RS03295 SM00460 Transglutaminase/protease-like homologues LL3_RS03335 SM01001 AIR carboxylase LL3_RS03345 SM00998 Adenylosuccinate lyase C-terminus LL3_RS03360 SM01211 LL3_RS03360 LL3_RS03385 SM00798 AICARFT/IMPCHase bienzyme LL3_RS03385 SM00851 MGS-like domain LL3_RS03390 SM01209 LL3_RS03390 LL3_RS03390 SM01210 LL3_RS03390 LL3_RS03395 SM00344 helix_turn_helix ASNC type LL3_RS03445 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LL3_RS03445 SM00292 breast cancer carboxy-terminal domain LL3_RS03445 SM00532 Ligase N family LL3_RS03480 SM00845 GatB domain LL3_RS03495 SM00046 Diacylglycerol kinase catalytic domain (presumed) LL3_RS03505 SM00382 ATPases associated with a variety of cellular activities LL3_RS03510 SM00382 ATPases associated with a variety of cellular activities LL3_RS03615 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS03685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_RS03700 SM00382 ATPases associated with a variety of cellular activities LL3_RS03705 SM00422 helix_turn_helix, mercury resistance LL3_RS03715 SM00382 ATPases associated with a variety of cellular activities LL3_RS03720 SM00487 DEAD-like helicases superfamily LL3_RS03720 SM00490 helicase superfamily c-terminal domain LL3_RS03725 SM00829 Enoylreductase LL3_RS03740 SM00656 LL3_RS03740 LL3_RS03780 SM00387 Histidine kinase-like ATPases LL3_RS03780 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS03780 SM00448 cheY-homologous receiver domain LL3_RS03785 SM00448 cheY-homologous receiver domain LL3_RS03800 SM00387 Histidine kinase-like ATPases LL3_RS03805 SM00448 cheY-homologous receiver domain LL3_RS03820 SM00849 Metallo-beta-lactamase superfamily LL3_RS03890 SM00642 Alpha-amylase domain LL3_RS03895 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS03895 SM00866 LL3_RS03895 LL3_RS03925 SM00354 helix_turn _helix lactose operon repressor LL3_RS03950 SM00226 Low molecular weight phosphatase family LL3_RS04015 SM00478 endonuclease III LL3_RS04035 SM00382 ATPases associated with a variety of cellular activities LL3_RS04040 SM00220 Serine/Threonine protein kinases, catalytic domain LL3_RS04040 SM01260 LL3_RS04040 LL3_RS04065 SM00861 Transketolase, pyrimidine binding domain LL3_RS04080 SM00382 ATPases associated with a variety of cellular activities LL3_RS04110 SM00382 ATPases associated with a variety of cellular activities LL3_RS04115 SM00382 ATPases associated with a variety of cellular activities LL3_RS04165 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS04230 SM00287 Bacterial SH3 domain homologues LL3_RS04275 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS04325 SM00382 ATPases associated with a variety of cellular activities LL3_RS04345 SM00843 LL3_RS04345 LL3_RS04360 SM00507 HNH nucleases LL3_RS04470 SM00644 LL3_RS04470 LL3_RS04490 SM00478 endonuclease III LL3_RS04490 SM00525 LL3_RS04490 LL3_RS04520 SM00382 ATPases associated with a variety of cellular activities LL3_RS04685 SM00382 ATPases associated with a variety of cellular activities LL3_RS04690 SM00382 ATPases associated with a variety of cellular activities LL3_RS04695 SM01060 LL3_RS04695 LL3_RS04705 SM00382 ATPases associated with a variety of cellular activities LL3_RS04710 SM00062 Bacterial periplasmic substrate-binding proteins LL3_RS04740 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS04755 SM00567 E-Z type HEAT repeats LL3_RS04785 SM00763 PrkA AAA domain LL3_RS04795 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS04825 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS04830 SM00382 ATPases associated with a variety of cellular activities LL3_RS04835 SM00382 ATPases associated with a variety of cellular activities LL3_RS04845 SM00357 Cold shock protein domain LL3_RS04855 SM00267 diguanylate cyclase LL3_RS04910 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS04955 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LL3_RS04955 SM00387 Histidine kinase-like ATPases LL3_RS04960 SM00421 helix_turn_helix, Lux Regulon LL3_RS04960 SM00448 cheY-homologous receiver domain LL3_RS04980 SM00257 Lysin motif LL3_RS05000 SM00098 Alkaline phosphatase homologues LL3_RS05005 SM00257 Lysin motif LL3_RS05050 SM00563 Phosphate acyltransferases LL3_RS05055 SM01091 Transporter associated domain LL3_RS05060 SM00422 helix_turn_helix, mercury resistance LL3_RS05070 SM00825 Beta-ketoacyl synthase LL3_RS05075 SM01091 Transporter associated domain LL3_RS05130 SM00382 ATPases associated with a variety of cellular activities LL3_RS05135 SM00382 ATPases associated with a variety of cellular activities LL3_RS05185 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_RS05220 SM00382 ATPases associated with a variety of cellular activities LL3_RS05240 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_RS05280 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS05310 SM00382 ATPases associated with a variety of cellular activities LL3_RS05390 SM00849 Metallo-beta-lactamase superfamily LL3_RS05430 SM00855 Phosphoglycerate mutase family LL3_RS05450 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_RS05465 SM00914 LL3_RS05465 LL3_RS05490 SM00894 Excalibur calcium-binding domain LL3_RS05530 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS05655 SM00342 helix_turn_helix, arabinose operon control protein LL3_RS05660 SM00354 helix_turn _helix lactose operon repressor LL3_RS05680 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS05705 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_RS05715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_RS05715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS05775 SM00859 Semialdehyde dehydrogenase, NAD binding domain LL3_RS05795 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain LL3_RS05800 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LL3_RS05800 SM01209 LL3_RS05800 LL3_RS05850 SM00825 Beta-ketoacyl synthase LL3_RS05860 SM00382 ATPases associated with a variety of cellular activities LL3_RS05865 SM00382 ATPases associated with a variety of cellular activities LL3_RS05910 SM00382 ATPases associated with a variety of cellular activities LL3_RS05915 SM00382 ATPases associated with a variety of cellular activities LL3_RS05975 SM01118 LL3_RS05975 LL3_RS05985 SM00954 Region found in RelA / SpoT proteins LL3_RS06110 SM00849 Metallo-beta-lactamase superfamily LL3_RS06120 SM00382 ATPases associated with a variety of cellular activities LL3_RS06125 SM00966 SpoVT / AbrB like domain LL3_RS06175 SM00860 SMI1 / KNR4 family LL3_RS06280 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS06305 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_RS06305 SM01134 LL3_RS06305 LL3_RS06320 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS06340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LL3_RS06340 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LL3_RS06375 SM00382 ATPases associated with a variety of cellular activities LL3_RS06405 SM00354 helix_turn _helix lactose operon repressor LL3_RS06415 SM00448 cheY-homologous receiver domain LL3_RS06415 SM00862 Transcriptional regulatory protein, C terminal LL3_RS06420 SM00387 Histidine kinase-like ATPases LL3_RS06420 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS06440 SM00028 Tetratricopeptide repeats LL3_RS06450 SM00257 Lysin motif LL3_RS06450 SM00644 LL3_RS06450 LL3_RS06470 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS06485 SM00382 ATPases associated with a variety of cellular activities LL3_RS06575 SM00257 Lysin motif LL3_RS06640 SM00257 Lysin motif LL3_RS06640 SM00644 LL3_RS06640 LL3_RS06685 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_RS06710 SM00382 ATPases associated with a variety of cellular activities LL3_RS06725 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LL3_RS06735 SM00382 ATPases associated with a variety of cellular activities LL3_RS06775 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LL3_RS06790 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS06810 SM00028 Tetratricopeptide repeats LL3_RS06825 SM00100 Cyclic nucleotide-monophosphate binding domain LL3_RS06850 SM00382 ATPases associated with a variety of cellular activities LL3_RS06860 SM00257 Lysin motif LL3_RS06860 SM00636 LL3_RS06860 LL3_RS06865 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS06865 SM00924 MgtE intracellular N domain LL3_RS06870 SM00422 helix_turn_helix, mercury resistance LL3_RS06880 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS06895 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen LL3_RS06900 SM00052 Putative diguanylate phosphodiesterase LL3_RS06900 SM00267 diguanylate cyclase LL3_RS06955 SM00091 PAS domain LL3_RS06955 SM00387 Histidine kinase-like ATPases LL3_RS06955 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS06995 SM01007 Class II Aldolase and Adducin N-terminal domain LL3_RS07010 SM00387 Histidine kinase-like ATPases LL3_RS07010 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS07015 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS07030 SM00382 ATPases associated with a variety of cellular activities LL3_RS07030 SM01086 C-terminal, D2-small domain, of ClpB protein LL3_RS07105 SM00354 helix_turn _helix lactose operon repressor LL3_RS07110 SM01061 CAT RNA binding domain LL3_RS07140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_RS07140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS07165 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LL3_RS07165 SM00091 PAS domain LL3_RS07165 SM00387 Histidine kinase-like ATPases LL3_RS07165 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS07175 SM00260 Two component signalling adaptor domain LL3_RS07175 SM00448 cheY-homologous receiver domain LL3_RS07190 SM00257 Lysin motif LL3_RS07210 SM00052 Putative diguanylate phosphodiesterase LL3_RS07305 SM00852 Probable molybdopterin binding domain LL3_RS07335 SM00382 ATPases associated with a variety of cellular activities LL3_RS07345 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_RS07345 SM01134 LL3_RS07345 LL3_RS07370 SM00382 ATPases associated with a variety of cellular activities LL3_RS07390 SM00966 SpoVT / AbrB like domain LL3_RS07395 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LL3_RS07395 SM00091 PAS domain LL3_RS07395 SM00387 Histidine kinase-like ATPases LL3_RS07395 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS07415 SM00849 Metallo-beta-lactamase superfamily LL3_RS07450 SM00861 Transketolase, pyrimidine binding domain LL3_RS07530 SM00838 Elongation factor G C-terminus LL3_RS07550 SM00670 Large family of predicted nucleotide-binding domains LL3_RS07605 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS07650 SM00028 Tetratricopeptide repeats LL3_RS07675 SM00465 GIY-YIG type nucleases (URI domain) LL3_RS07780 SM00857 Resolvase, N terminal domain LL3_RS07800 SM00878 Biotin carboxylase C-terminal domain LL3_RS07845 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS07945 SM00740 LL3_RS07945 LL3_RS07950 SM00740 LL3_RS07950 LL3_RS07990 SM00842 Cell division protein FtsA LL3_RS07995 SM00864 Tubulin/FtsZ family, GTPase domain LL3_RS07995 SM00865 Tubulin/FtsZ family, C-terminal domain LL3_RS08020 SM00382 ATPases associated with a variety of cellular activities LL3_RS08055 SM00363 S4 RNA-binding domain LL3_RS08085 SM00363 S4 RNA-binding domain LL3_RS08110 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain LL3_RS08115 SM00851 MGS-like domain LL3_RS08115 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LL3_RS08130 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LL3_RS08180 SM00642 Alpha-amylase domain LL3_RS08190 SM00831 Cation transporter/ATPase, N-terminus LL3_RS08205 SM00072 Guanylate kinase homologues. LL3_RS08210 SM01409 LL3_RS08210 LL3_RS08220 SM00487 DEAD-like helicases superfamily LL3_RS08220 SM00490 helicase superfamily c-terminal domain LL3_RS08245 SM00331 Sigma factor PP2C-like phosphatases LL3_RS08245 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain LL3_RS08250 SM00220 Serine/Threonine protein kinases, catalytic domain LL3_RS08250 SM00740 LL3_RS08250 LL3_RS08265 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain LL3_RS08285 SM01120 LL3_RS08285 LL3_RS08285 SM01121 LL3_RS08285 LL3_RS08300 SM00487 DEAD-like helicases superfamily LL3_RS08300 SM00490 helicase superfamily c-terminal domain LL3_RS08315 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LL3_RS08320 SM00822 LL3_RS08320 LL3_RS08330 SM00358 Double-stranded RNA binding motif LL3_RS08330 SM00535 Ribonuclease III family LL3_RS08335 SM00968 SMC proteins Flexible Hinge Domain LL3_RS08340 SM00382 ATPases associated with a variety of cellular activities LL3_RS08340 SM00962 SRP54-type protein, GTPase domain LL3_RS08340 SM00963 SRP54-type protein, helical bundle domain LL3_RS08350 SM00382 ATPases associated with a variety of cellular activities LL3_RS08350 SM00962 SRP54-type protein, GTPase domain LL3_RS08350 SM00963 SRP54-type protein, helical bundle domain LL3_RS08410 SM00881 CoA binding domain LL3_RS08420 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LL3_RS08420 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LL3_RS08420 SM00493 LL3_RS08420 LL3_RS08440 SM00382 ATPases associated with a variety of cellular activities LL3_RS08440 SM01086 C-terminal, D2-small domain, of ClpB protein LL3_RS08480 SM00382 ATPases associated with a variety of cellular activities LL3_RS08530 SM00448 cheY-homologous receiver domain LL3_RS08565 SM00962 SRP54-type protein, GTPase domain LL3_RS08575 SM00448 cheY-homologous receiver domain LL3_RS08580 SM00073 Histidine Phosphotransfer domain LL3_RS08580 SM00260 Two component signalling adaptor domain LL3_RS08580 SM00387 Histidine kinase-like ATPases LL3_RS08580 SM01231 LL3_RS08580 LL3_RS08585 SM00260 Two component signalling adaptor domain LL3_RS08645 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_RS08655 SM00479 LL3_RS08655 LL3_RS08655 SM00481 DNA polymerase alpha chain like domain LL3_RS08665 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_RS08665 SM00322 K homology RNA-binding domain LL3_RS08700 SM00904 Riboflavin kinase LL3_RS08705 SM01387 LL3_RS08705 LL3_RS08710 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_RS08710 SM00322 K homology RNA-binding domain LL3_RS08740 SM00859 Semialdehyde dehydrogenase, NAD binding domain LL3_RS08750 SM01130 LL3_RS08750 LL3_RS08755 SM00849 Metallo-beta-lactamase superfamily LL3_RS08770 SM00382 ATPases associated with a variety of cellular activities LL3_RS08770 SM00843 LL3_RS08770 LL3_RS08775 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS08775 SM00866 LL3_RS08775 LL3_RS08785 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS08820 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS08830 SM00852 Probable molybdopterin binding domain LL3_RS08835 SM00382 ATPases associated with a variety of cellular activities LL3_RS08845 SM00322 K homology RNA-binding domain LL3_RS08845 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_RS08860 SM00829 Enoylreductase LL3_RS08870 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_RS08885 SM00533 DNA-binding domain of DNA mismatch repair MUTS family LL3_RS08885 SM00534 ATPase domain of DNA mismatch repair MUTS family LL3_RS08890 SM00853 MutL C terminal dimerisation domain LL3_RS08890 SM01340 LL3_RS08890 LL3_RS08895 SM00849 Metallo-beta-lactamase superfamily LL3_RS08900 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LL3_RS08905 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LL3_RS08910 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LL3_RS08935 SM00822 LL3_RS08935 LL3_RS08935 SM00823 Phosphopantetheine attachment site LL3_RS08935 SM00825 Beta-ketoacyl synthase LL3_RS08935 SM00826 LL3_RS08935 LL3_RS08935 SM01294 LL3_RS08935 LL3_RS08940 SM00822 LL3_RS08940 LL3_RS08940 SM00823 Phosphopantetheine attachment site LL3_RS08940 SM00825 Beta-ketoacyl synthase LL3_RS08940 SM00826 LL3_RS08940 LL3_RS08940 SM01294 LL3_RS08940 LL3_RS08945 SM00822 LL3_RS08945 LL3_RS08945 SM00823 Phosphopantetheine attachment site LL3_RS08945 SM00825 Beta-ketoacyl synthase LL3_RS08945 SM00826 LL3_RS08945 LL3_RS08945 SM01294 LL3_RS08945 LL3_RS08950 SM00822 LL3_RS08950 LL3_RS08950 SM00823 Phosphopantetheine attachment site LL3_RS08950 SM00825 Beta-ketoacyl synthase LL3_RS08950 SM00826 LL3_RS08950 LL3_RS08950 SM01294 LL3_RS08950 LL3_RS08955 SM00823 Phosphopantetheine attachment site LL3_RS08955 SM00825 Beta-ketoacyl synthase LL3_RS08955 SM01294 LL3_RS08955 LL3_RS09070 SM00382 ATPases associated with a variety of cellular activities LL3_RS09085 SM00422 helix_turn_helix, mercury resistance LL3_RS09090 SM01230 LL3_RS09090 LL3_RS09165 SM00829 Enoylreductase LL3_RS09190 SM00829 Enoylreductase LL3_RS09265 SM00710 Parallel beta-helix repeats LL3_RS09310 SM00257 Lysin motif LL3_RS09315 SM00857 Resolvase, N terminal domain LL3_RS09325 SM00861 Transketolase, pyrimidine binding domain LL3_RS09350 SM00448 cheY-homologous receiver domain LL3_RS09415 SM01207 LL3_RS09415 LL3_RS09420 SM00881 CoA binding domain LL3_RS09425 SM00387 Histidine kinase-like ATPases LL3_RS09425 SM00433 TopoisomeraseII LL3_RS09430 SM00434 DNA Topoisomerase IV LL3_RS09470 SM00387 Histidine kinase-like ATPases LL3_RS09470 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS09475 SM00448 cheY-homologous receiver domain LL3_RS09475 SM00862 Transcriptional regulatory protein, C terminal LL3_RS09485 SM00606 Cellulose Binding Domain Type IV LL3_RS09490 SM00823 Phosphopantetheine attachment site LL3_RS09490 SM00824 Thioesterase LL3_RS09495 SM00823 Phosphopantetheine attachment site LL3_RS09500 SM00823 Phosphopantetheine attachment site LL3_RS09500 SM00825 Beta-ketoacyl synthase LL3_RS09505 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LL3_RS09515 SM00882 Coenzyme A transferase LL3_RS09520 SM00882 Coenzyme A transferase LL3_RS09530 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_RS09530 SM00876 Biotin and Thiamin Synthesis associated domain LL3_RS09590 SM00878 Biotin carboxylase C-terminal domain LL3_RS09615 SM00824 Thioesterase LL3_RS09620 SM00823 Phosphopantetheine attachment site LL3_RS09620 SM01294 LL3_RS09620 LL3_RS09670 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_RS09695 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LL3_RS09710 SM00822 LL3_RS09710 LL3_RS09730 SM00155 Phospholipase D. Active site motifs. LL3_RS09785 SM00857 Resolvase, N terminal domain LL3_RS09825 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS09845 SM00342 helix_turn_helix, arabinose operon control protein LL3_RS09855 SM00849 Metallo-beta-lactamase superfamily LL3_RS09865 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_RS09900 SM00257 Lysin motif LL3_RS09905 SM00341 Helicase and RNase D C-terminal LL3_RS09905 SM00487 DEAD-like helicases superfamily LL3_RS09905 SM00490 helicase superfamily c-terminal domain LL3_RS09905 SM00956 LL3_RS09905 LL3_RS09985 SM00849 Metallo-beta-lactamase superfamily LL3_RS09995 SM00861 Transketolase, pyrimidine binding domain LL3_RS10000 SM00327 von Willebrand factor (vWF) type A domain LL3_RS10005 SM00382 ATPases associated with a variety of cellular activities LL3_RS10015 SM00257 Lysin motif LL3_RS10120 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS10120 SM00866 LL3_RS10120 LL3_RS10125 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_RS10125 SM00245 tail specific protease LL3_RS10155 SM00014 Acid phosphatase homologues LL3_RS10200 SM00882 Coenzyme A transferase LL3_RS10205 SM00882 Coenzyme A transferase LL3_RS10220 SM00871 Bacterial transcription activator, effector binding domain LL3_RS10285 SM00857 Resolvase, N terminal domain LL3_RS10305 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS10380 SM00567 E-Z type HEAT repeats LL3_RS10380 SM00932 Scaffold protein Nfu/NifU N terminal LL3_RS10385 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_RS10405 SM00357 Cold shock protein domain LL3_RS10445 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LL3_RS10445 SM00475 5'-3' exonuclease LL3_RS10635 SM00465 GIY-YIG type nucleases (URI domain) LL3_RS10635 SM00496 Intron-encoded nuclease repeat 2 LL3_RS10760 SM00481 DNA polymerase alpha chain like domain LL3_RS10810 SM00710 Parallel beta-helix repeats LL3_RS10970 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS11025 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS11130 SM00864 Tubulin/FtsZ family, GTPase domain LL3_RS11160 SM00411 bacterial (prokaryotic) histone like domain LL3_RS11340 SM00710 Parallel beta-helix repeats LL3_RS11370 SM00028 Tetratricopeptide repeats LL3_RS11405 SM00860 SMI1 / KNR4 family LL3_RS11415 SM00318 Staphylococcal nuclease homologues LL3_RS11415 SM00894 Excalibur calcium-binding domain LL3_RS11420 SM00857 Resolvase, N terminal domain LL3_RS11440 SM00491 LL3_RS11440 LL3_RS11455 SM00981 LL3_RS11455 LL3_RS11475 SM00487 DEAD-like helicases superfamily LL3_RS11475 SM00490 helicase superfamily c-terminal domain LL3_RS11525 SM00060 Fibronectin type 3 domain LL3_RS11535 SM00478 endonuclease III LL3_RS11535 SM00525 LL3_RS11535 LL3_RS11560 SM00479 LL3_RS11560 LL3_RS11560 SM00487 DEAD-like helicases superfamily LL3_RS11560 SM00491 LL3_RS11560 LL3_RS11600 SM00851 MGS-like domain LL3_RS11620 SM00835 Cupin LL3_RS11655 SM00914 LL3_RS11655 LL3_RS11660 SM00028 Tetratricopeptide repeats LL3_RS11725 SM00138 Methyltransferase, chemotaxis proteins LL3_RS11730 SM00562 LL3_RS11730 LL3_RS11760 SM00411 bacterial (prokaryotic) histone like domain LL3_RS11800 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_RS11835 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LL3_RS11855 SM00257 Lysin motif LL3_RS11865 SM00487 DEAD-like helicases superfamily LL3_RS11865 SM00490 helicase superfamily c-terminal domain LL3_RS11900 SM00091 PAS domain LL3_RS11900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS11900 SM00387 Histidine kinase-like ATPases LL3_RS11900 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS11905 SM00448 cheY-homologous receiver domain LL3_RS11905 SM00862 Transcriptional regulatory protein, C terminal LL3_RS11925 SM00363 S4 RNA-binding domain LL3_RS12060 SM00387 Histidine kinase-like ATPases LL3_RS12070 SM00936 Penicillin-binding protein 5, C-terminal domain LL3_RS12115 SM00919 Malic enzyme, NAD binding domain LL3_RS12115 SM01274 LL3_RS12115 LL3_RS12130 SM00870 LL3_RS12130 LL3_RS12135 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS12225 SM00849 Metallo-beta-lactamase superfamily LL3_RS12275 SM01350 LL3_RS12275 LL3_RS12320 SM00382 ATPases associated with a variety of cellular activities LL3_RS12330 SM00062 Bacterial periplasmic substrate-binding proteins LL3_RS12330 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LL3_RS12340 SM00046 Diacylglycerol kinase catalytic domain (presumed) LL3_RS12350 SM00861 Transketolase, pyrimidine binding domain LL3_RS12370 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LL3_RS12380 SM00091 PAS domain LL3_RS12380 SM00382 ATPases associated with a variety of cellular activities LL3_RS12425 SM00646 LL3_RS12425 LL3_RS12440 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS12460 SM01005 Alanine racemase, C-terminal domain LL3_RS12465 SM00448 cheY-homologous receiver domain LL3_RS12470 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_RS12485 SM00363 S4 RNA-binding domain LL3_RS12490 SM00861 Transketolase, pyrimidine binding domain LL3_RS12525 SM00878 Biotin carboxylase C-terminal domain LL3_RS12570 SM00382 ATPases associated with a variety of cellular activities LL3_RS12580 SM00841 Elongation factor P, C-terminal LL3_RS12580 SM01185 LL3_RS12580 LL3_RS12610 SM00529 Helix-turn-helix diphteria tox regulatory element LL3_RS12620 SM00450 Rhodanese Homology Domain LL3_RS12640 SM00487 DEAD-like helicases superfamily LL3_RS12640 SM00490 helicase superfamily c-terminal domain LL3_RS12655 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS12715 SM00382 ATPases associated with a variety of cellular activities LL3_RS12725 SM01091 Transporter associated domain LL3_RS12750 SM00849 Metallo-beta-lactamase superfamily LL3_RS12770 SM00631 LL3_RS12770 LL3_RS12805 SM00382 ATPases associated with a variety of cellular activities LL3_RS12810 SM00382 ATPases associated with a variety of cellular activities LL3_RS12855 SM00257 Lysin motif LL3_RS12890 SM00518 AP endonuclease family 2 LL3_RS12895 SM00487 DEAD-like helicases superfamily LL3_RS12895 SM00490 helicase superfamily c-terminal domain LL3_RS12930 SM00400 zinc finger LL3_RS12930 SM00493 LL3_RS12930 LL3_RS12945 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS12985 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_RS13035 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_RS13050 SM00271 DnaJ molecular chaperone homology domain LL3_RS13070 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_RS13075 SM00838 Elongation factor G C-terminus LL3_RS13120 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LL3_RS13140 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_RS13150 SM01103 LL3_RS13150 LL3_RS13185 SM00644 LL3_RS13185 LL3_RS13275 SM00849 Metallo-beta-lactamase superfamily LL3_RS13320 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LL3_RS13320 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LL3_RS13405 SM00732 Likely ribonuclease with RNase H fold. LL3_RS13415 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LL3_RS13425 SM00382 ATPases associated with a variety of cellular activities LL3_RS13430 SM00062 Bacterial periplasmic substrate-binding proteins LL3_RS13430 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LL3_RS13455 SM00382 ATPases associated with a variety of cellular activities LL3_RS13460 SM00028 Tetratricopeptide repeats LL3_RS13480 SM00382 ATPases associated with a variety of cellular activities LL3_RS13505 SM00287 Bacterial SH3 domain homologues LL3_RS13505 SM00646 LL3_RS13505 LL3_RS13515 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_RS13515 SM00954 Region found in RelA / SpoT proteins LL3_RS13565 SM01323 LL3_RS13565 LL3_RS13585 SM00382 ATPases associated with a variety of cellular activities LL3_RS13590 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LL3_RS13605 SM00257 Lysin motif LL3_RS13650 SM01317 LL3_RS13650 LL3_RS13745 SM00257 Lysin motif LL3_RS13755 SM01004 Delta-aminolevulinic acid dehydratase LL3_RS13790 SM00382 ATPases associated with a variety of cellular activities LL3_RS13790 SM00464 Found in ATP-dependent protease La (LON) LL3_RS13795 SM00382 ATPases associated with a variety of cellular activities LL3_RS13800 SM00382 ATPases associated with a variety of cellular activities LL3_RS13800 SM00994 ClpX C4-type zinc finger LL3_RS13800 SM01086 C-terminal, D2-small domain, of ClpB protein LL3_RS13825 SM01329 LL3_RS13825 LL3_RS13830 SM00917 LeuA allosteric (dimerisation) domain LL3_RS13885 SM00909 Sporulation and spore germination LL3_RS13895 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS13900 SM00421 helix_turn_helix, Lux Regulon LL3_RS13935 SM00465 GIY-YIG type nucleases (URI domain) LL3_RS13945 SM00813 Alpha-L-arabinofuranosidase C-terminus LL3_RS13950 SM00893 Electron transfer flavoprotein domain LL3_RS13955 SM00893 Electron transfer flavoprotein domain LL3_RS13985 SM00463 Small MutS-related domain LL3_RS13985 SM00533 DNA-binding domain of DNA mismatch repair MUTS family LL3_RS13985 SM00534 ATPase domain of DNA mismatch repair MUTS family LL3_RS13990 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LL3_RS13990 SM00481 DNA polymerase alpha chain like domain LL3_RS13990 SM00483 DNA polymerase X family LL3_RS14010 SM00873 B3/4 domain LL3_RS14010 SM00874 tRNA synthetase B5 domain LL3_RS14010 SM00896 Ferredoxin-fold anticodon binding domain LL3_RS14020 SM00967 RNA 2'-O ribose methyltransferase substrate binding LL3_RS14050 SM00813 Alpha-L-arabinofuranosidase C-terminus LL3_RS14080 SM01007 Class II Aldolase and Adducin N-terminal domain LL3_RS14140 SM00448 cheY-homologous receiver domain LL3_RS14140 SM00850 LytTr DNA-binding domain LL3_RS14145 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LL3_RS14145 SM00387 Histidine kinase-like ATPases LL3_RS14155 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LL3_RS14170 SM00382 ATPases associated with a variety of cellular activities LL3_RS14190 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LL3_RS14220 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain LL3_RS14220 SM01232 LL3_RS14220 LL3_RS14225 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LL3_RS14225 SM00474 3'-5' exonuclease LL3_RS14225 SM00475 5'-3' exonuclease LL3_RS14225 SM00482 DNA polymerase A domain LL3_RS14230 SM00091 PAS domain LL3_RS14230 SM00387 Histidine kinase-like ATPases LL3_RS14230 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS14235 SM00448 cheY-homologous receiver domain LL3_RS14235 SM00862 Transcriptional regulatory protein, C terminal LL3_RS14245 SM01329 LL3_RS14245 LL3_RS14295 SM00919 Malic enzyme, NAD binding domain LL3_RS14295 SM01274 LL3_RS14295 LL3_RS14300 SM00481 DNA polymerase alpha chain like domain LL3_RS14330 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS14335 SM00849 Metallo-beta-lactamase superfamily LL3_RS14355 SM00852 Probable molybdopterin binding domain LL3_RS14415 SM00981 LL3_RS14415 LL3_RS14450 SM00267 diguanylate cyclase LL3_RS14455 SM00363 S4 RNA-binding domain LL3_RS14455 SM01390 LL3_RS14455 LL3_RS14505 SM00363 S4 RNA-binding domain LL3_RS14520 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS14540 SM00354 helix_turn _helix lactose operon repressor LL3_RS14545 SM00830 Chorismate mutase type II LL3_RS14570 SM00382 ATPases associated with a variety of cellular activities LL3_RS14570 SM00843 LL3_RS14570 LL3_RS14605 SM00919 Malic enzyme, NAD binding domain LL3_RS14605 SM01274 LL3_RS14605 LL3_RS14610 SM00849 Metallo-beta-lactamase superfamily LL3_RS14630 SM00046 Diacylglycerol kinase catalytic domain (presumed) LL3_RS14665 SM00382 ATPases associated with a variety of cellular activities LL3_RS14670 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_RS14675 SM00363 S4 RNA-binding domain LL3_RS14700 SM00354 helix_turn _helix lactose operon repressor LL3_RS14730 SM00450 Rhodanese Homology Domain LL3_RS14745 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LL3_RS14745 SM00091 PAS domain LL3_RS14765 SM00382 ATPases associated with a variety of cellular activities LL3_RS14770 SM00387 Histidine kinase-like ATPases LL3_RS14775 SM00448 cheY-homologous receiver domain LL3_RS14775 SM00862 Transcriptional regulatory protein, C terminal LL3_RS14785 SM00382 ATPases associated with a variety of cellular activities LL3_RS14805 SM00382 ATPases associated with a variety of cellular activities LL3_RS14810 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS14825 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_RS14890 SM00382 ATPases associated with a variety of cellular activities LL3_RS14930 SM01234 LL3_RS14930 LL3_RS14935 SM00947 Carbonic anhydrase LL3_RS14955 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LL3_RS15120 SM00244 prohibitin homologues LL3_RS15165 SM00047 Lysozyme subfamily 2 LL3_RS15190 SM00028 Tetratricopeptide repeats LL3_RS15225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_RS15225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS15225 SM00319 Homologues of the ligand binding domain of Tar LL3_RS15230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_RS15230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS15230 SM00319 Homologues of the ligand binding domain of Tar LL3_RS15235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_RS15235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS15235 SM00319 Homologues of the ligand binding domain of Tar LL3_RS15240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LL3_RS15240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS15240 SM00319 Homologues of the ligand binding domain of Tar LL3_RS15260 SM00642 Alpha-amylase domain LL3_RS15265 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS15265 SM01091 Transporter associated domain LL3_RS15320 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_RS15330 SM00344 helix_turn_helix ASNC type LL3_RS15350 SM00387 Histidine kinase-like ATPases LL3_RS15350 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS15355 SM01298 LL3_RS15355 LL3_RS15360 SM00479 LL3_RS15360 LL3_RS15385 SM00091 PAS domain LL3_RS15385 SM00387 Histidine kinase-like ATPases LL3_RS15390 SM00448 cheY-homologous receiver domain LL3_RS15400 SM00382 ATPases associated with a variety of cellular activities LL3_RS15460 SM00421 helix_turn_helix, Lux Regulon LL3_RS15460 SM00448 cheY-homologous receiver domain LL3_RS15465 SM00387 Histidine kinase-like ATPases LL3_RS15490 SM00052 Putative diguanylate phosphodiesterase LL3_RS15530 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_RS15575 SM01002 Alanine dehydrogenase/PNT, C-terminal domain LL3_RS15575 SM01003 Alanine dehydrogenase/PNT, N-terminal domain LL3_RS15585 SM00923 MbtH-like protein LL3_RS15590 SM00823 Phosphopantetheine attachment site LL3_RS15590 SM00824 Thioesterase LL3_RS15670 SM01240 LL3_RS15670 LL3_RS15685 SM00382 ATPases associated with a variety of cellular activities LL3_RS15795 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_RS15865 SM00382 ATPases associated with a variety of cellular activities LL3_RS15870 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS15870 SM00866 LL3_RS15870 LL3_RS15900 SM00422 helix_turn_helix, mercury resistance LL3_RS15910 SM00752 Horizontally Transferred TransMembrane Domain LL3_RS15925 SM00465 GIY-YIG type nucleases (URI domain) LL3_RS15965 SM00644 LL3_RS15965 LL3_RS15990 SM00710 Parallel beta-helix repeats LL3_RS15995 SM00047 Lysozyme subfamily 2 LL3_RS16090 SM00487 DEAD-like helicases superfamily LL3_RS16095 SM00990 LL3_RS16095 LL3_RS16115 SM00482 DNA polymerase A domain LL3_RS16165 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS16200 SM00382 ATPases associated with a variety of cellular activities LL3_RS16225 SM00382 ATPases associated with a variety of cellular activities LL3_RS16225 SM00930 LL3_RS16225 LL3_RS16240 SM00493 LL3_RS16240 LL3_RS16290 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS16290 SM00529 Helix-turn-helix diphteria tox regulatory element LL3_RS16305 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS16320 SM00382 ATPases associated with a variety of cellular activities LL3_RS16335 SM00822 LL3_RS16335 LL3_RS16345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_RS16350 SM00448 cheY-homologous receiver domain LL3_RS16350 SM00862 Transcriptional regulatory protein, C terminal LL3_RS16355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS16355 SM00387 Histidine kinase-like ATPases LL3_RS16355 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS16390 SM00421 helix_turn_helix, Lux Regulon LL3_RS16390 SM00448 cheY-homologous receiver domain LL3_RS16395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS16395 SM00387 Histidine kinase-like ATPases LL3_RS16430 SM00382 ATPases associated with a variety of cellular activities LL3_RS16455 SM00387 Histidine kinase-like ATPases LL3_RS16455 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS16460 SM00448 cheY-homologous receiver domain LL3_RS16460 SM00862 Transcriptional regulatory protein, C terminal LL3_RS16475 SM00835 Cupin LL3_RS16485 SM00382 ATPases associated with a variety of cellular activities LL3_RS16550 SM00421 helix_turn_helix, Lux Regulon LL3_RS16550 SM00448 cheY-homologous receiver domain LL3_RS16560 SM00382 ATPases associated with a variety of cellular activities LL3_RS16670 SM00382 ATPases associated with a variety of cellular activities LL3_RS16690 SM00062 Bacterial periplasmic substrate-binding proteins LL3_RS16720 SM00316 Ribosomal protein S1-like RNA-binding domain LL3_RS16720 SM00357 Cold shock protein domain LL3_RS16720 SM00955 LL3_RS16720 LL3_RS16735 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS16740 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS16745 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS16755 SM00387 Histidine kinase-like ATPases LL3_RS16755 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS16760 SM00448 cheY-homologous receiver domain LL3_RS16760 SM00862 Transcriptional regulatory protein, C terminal LL3_RS16775 SM00382 ATPases associated with a variety of cellular activities LL3_RS16795 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS16795 SM00382 ATPases associated with a variety of cellular activities LL3_RS16820 SM00116 Domain in cystathionine beta-synthase and other proteins. LL3_RS16820 SM00382 ATPases associated with a variety of cellular activities LL3_RS16890 SM00984 UDP binding domain LL3_RS16900 SM01192 LL3_RS16900 LL3_RS16900 SM01193 LL3_RS16900 LL3_RS16925 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LL3_RS16940 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS17000 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS17000 SM00895 LL3_RS17000 LL3_RS17095 SM00530 Helix-turn-helix XRE-family like proteins LL3_RS17120 SM00849 Metallo-beta-lactamase superfamily LL3_RS17175 SM00640 Glycosyl hydrolases family 32 LL3_RS17185 SM00354 helix_turn _helix lactose operon repressor LL3_RS17230 SM00947 Carbonic anhydrase LL3_RS17290 SM00028 Tetratricopeptide repeats LL3_RS17295 SM00387 Histidine kinase-like ATPases LL3_RS17295 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS17300 SM00448 cheY-homologous receiver domain LL3_RS17300 SM00862 Transcriptional regulatory protein, C terminal LL3_RS17305 SM00382 ATPases associated with a variety of cellular activities LL3_RS17385 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS17385 SM00866 LL3_RS17385 LL3_RS17425 SM00382 ATPases associated with a variety of cellular activities LL3_RS17430 SM00487 DEAD-like helicases superfamily LL3_RS17430 SM00490 helicase superfamily c-terminal domain LL3_RS17465 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_RS17475 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_RS17475 SM00245 tail specific protease LL3_RS17480 SM00710 Parallel beta-helix repeats LL3_RS17480 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses LL3_RS17490 SM00382 ATPases associated with a variety of cellular activities LL3_RS17505 SM00937 LL3_RS17505 LL3_RS17510 SM00957 SecA DEAD-like domain LL3_RS17510 SM00958 SecA preprotein cross-linking domain LL3_RS17595 SM00487 DEAD-like helicases superfamily LL3_RS17595 SM00490 helicase superfamily c-terminal domain LL3_RS17605 SM00421 helix_turn_helix, Lux Regulon LL3_RS17605 SM00448 cheY-homologous receiver domain LL3_RS17610 SM00387 Histidine kinase-like ATPases LL3_RS17650 SM00984 UDP binding domain LL3_RS17670 SM00646 LL3_RS17670 LL3_RS17700 SM00382 ATPases associated with a variety of cellular activities LL3_RS17735 SM00047 Lysozyme subfamily 2 LL3_RS17735 SM00287 Bacterial SH3 domain homologues LL3_RS17790 SM00854 Bacterial capsule synthesis protein PGA_cap LL3_RS17825 SM00354 helix_turn _helix lactose operon repressor LL3_RS17840 SM00382 ATPases associated with a variety of cellular activities LL3_RS17855 SM00287 Bacterial SH3 domain homologues LL3_RS17905 SM00903 Flavin reductase like domain LL3_RS17920 SM00344 helix_turn_helix ASNC type LL3_RS17945 SM00860 SMI1 / KNR4 family LL3_RS17980 SM00984 UDP binding domain LL3_RS18010 SM00487 DEAD-like helicases superfamily LL3_RS18010 SM00490 helicase superfamily c-terminal domain LL3_RS18020 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_RS18020 SM01134 LL3_RS18020 LL3_RS18075 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS18105 SM00938 Nitrogen regulatory protein P-II LL3_RS18115 SM00014 Acid phosphatase homologues LL3_RS18145 SM00155 Phospholipase D. Active site motifs. LL3_RS18195 SM00028 Tetratricopeptide repeats LL3_RS18200 SM00729 Elongator protein 3, MiaB family, Radical SAM LL3_RS18210 SM00327 von Willebrand factor (vWF) type A domain LL3_RS18215 SM00327 von Willebrand factor (vWF) type A domain LL3_RS18250 SM00382 ATPases associated with a variety of cellular activities LL3_RS18310 SM00226 Low molecular weight phosphatase family LL3_RS18350 SM00937 LL3_RS18350 LL3_RS18370 SM00919 Malic enzyme, NAD binding domain LL3_RS18370 SM01274 LL3_RS18370 LL3_RS18385 SM00357 Cold shock protein domain LL3_RS18385 SM00382 ATPases associated with a variety of cellular activities LL3_RS18385 SM00959 Rho termination factor, N-terminal domain LL3_RS18410 SM00448 cheY-homologous receiver domain LL3_RS18435 SM00155 Phospholipase D. Active site motifs. LL3_RS18450 SM00382 ATPases associated with a variety of cellular activities LL3_RS18455 SM00155 Phospholipase D. Active site motifs. LL3_RS18475 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LL3_RS18490 SM00100 Cyclic nucleotide-monophosphate binding domain LL3_RS18490 SM00419 helix_turn_helix, cAMP Regulatory protein LL3_RS18500 SM00836 DALR anticodon binding domain LL3_RS18500 SM01016 Arginyl tRNA synthetase N terminal dom LL3_RS18520 SM00028 Tetratricopeptide repeats LL3_RS18565 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS18580 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LL3_RS18720 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LL3_RS18760 SM00858 LL3_RS18760 LL3_RS18805 SM00986 Uracil DNA glycosylase superfamily LL3_RS18805 SM00987 UreE urease accessory protein, C-terminal domain LL3_RS18830 SM00640 Glycosyl hydrolases family 32 LL3_RS18840 SM01061 CAT RNA binding domain LL3_RS18875 SM00886 Stress responsive A/B Barrel Domain LL3_RS19010 SM00422 helix_turn_helix, mercury resistance LL3_RS19020 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LL3_RS19045 SM00954 Region found in RelA / SpoT proteins LL3_RS19130 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_RS19175 SM01060 LL3_RS19175 LL3_RS19195 SM00382 ATPases associated with a variety of cellular activities LL3_RS19200 SM00382 ATPases associated with a variety of cellular activities LL3_RS19225 SM00382 ATPases associated with a variety of cellular activities LL3_RS19290 SM01060 LL3_RS19290 LL3_RS19305 SM01061 CAT RNA binding domain LL3_RS19315 SM00487 DEAD-like helicases superfamily LL3_RS19315 SM00490 helicase superfamily c-terminal domain LL3_RS19355 SM00656 LL3_RS19355 LL3_RS19445 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain LL3_RS19455 SM01133 LL3_RS19455 LL3_RS19510 SM00382 ATPases associated with a variety of cellular activities LL3_RS19515 SM00387 Histidine kinase-like ATPases LL3_RS19520 SM00448 cheY-homologous receiver domain LL3_RS19520 SM00862 Transcriptional regulatory protein, C terminal LL3_RS19575 SM00420 helix_turn_helix, Deoxyribose operon repressor LL3_RS19575 SM01134 LL3_RS19575 LL3_RS19590 SM00387 Histidine kinase-like ATPases LL3_RS19600 SM00421 helix_turn_helix, Lux Regulon LL3_RS19600 SM00448 cheY-homologous receiver domain LL3_RS19625 SM00564 beta-propeller repeat LL3_RS19635 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_RS19695 SM00857 Resolvase, N terminal domain LL3_RS19750 SM00155 Phospholipase D. Active site motifs. LL3_RS19770 SM01092 CO dehydrogenase flavoprotein C-terminal domain LL3_RS19775 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LL3_RS19845 SM00028 Tetratricopeptide repeats LL3_RS19870 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LL3_RS19875 SM00382 ATPases associated with a variety of cellular activities LL3_RS19890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS19890 SM00387 Histidine kinase-like ATPases LL3_RS19890 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS19895 SM00448 cheY-homologous receiver domain LL3_RS19895 SM00862 Transcriptional regulatory protein, C terminal LL3_RS19905 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LL3_RS19910 SM00849 Metallo-beta-lactamase superfamily LL3_RS19925 SM00091 PAS domain LL3_RS19925 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LL3_RS19925 SM00387 Histidine kinase-like ATPases LL3_RS19925 SM00388 His Kinase A (phosphoacceptor) domain LL3_RS19930 SM00448 cheY-homologous receiver domain LL3_RS19930 SM00862 Transcriptional regulatory protein, C terminal LL3_RS19960 SM00788 Adenylosuccinate synthetase LL3_RS19970 SM00382 ATPases associated with a variety of cellular activities LL3_RS20020 SM00267 diguanylate cyclase LL3_RS20045 SM01131 LL3_RS20045 LL3_RS20060 SM00640 Glycosyl hydrolases family 32 LL3_RS20065 SM00345 helix_turn_helix gluconate operon transcriptional repressor LL3_RS20065 SM00895 LL3_RS20065 LL3_RS20095 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS20105 SM00347 helix_turn_helix multiple antibiotic resistance protein LL3_RS20145 SM00354 helix_turn _helix lactose operon repressor LL3_RS20160 SM00342 helix_turn_helix, arabinose operon control protein LL3_RS20185 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LL3_RS20210 SM00470 ParB-like nuclease domain LL3_RS20220 SM00470 ParB-like nuclease domain LL3_RS20230 SM01228 LL3_RS20230 LL3_RS20240 SM00393 Putative single-stranded nucleic acids-binding domain LL3_RS20240 SM01245 LL3_RS20240 LL3_RS20325 SM00287 Bacterial SH3 domain homologues LL3_RS20325 SM00644 LL3_RS20325