CY96_RS00075	SM00382	ATPases associated with a variety of cellular activities
CY96_RS00075	SM00930	CY96_RS00075
CY96_RS00085	SM00829	Enoylreductase
CY96_RS00135	SM00382	ATPases associated with a variety of cellular activities
CY96_RS00140	SM00382	ATPases associated with a variety of cellular activities
CY96_RS00155	SM00342	helix_turn_helix, arabinose operon control protein
CY96_RS00240	SM00563	Phosphate acyltransferases
CY96_RS00250	SM00354	helix_turn _helix lactose operon repressor
CY96_RS00310	SM00382	ATPases associated with a variety of cellular activities
CY96_RS00335	SM00382	ATPases associated with a variety of cellular activities
CY96_RS00340	SM00382	ATPases associated with a variety of cellular activities
CY96_RS00415	SM00487	DEAD-like helicases superfamily
CY96_RS00415	SM00490	helicase superfamily c-terminal domain
CY96_RS00440	SM01005	Alanine racemase, C-terminal domain
CY96_RS00455	SM00316	Ribosomal protein S1-like RNA-binding domain
CY96_RS00455	SM00732	Likely ribonuclease with RNase H fold.
CY96_RS00465	SM00731	SprT homologues.
CY96_RS00575	SM00382	ATPases associated with a variety of cellular activities
CY96_RS00580	SM00881	CoA binding domain
CY96_RS00595	SM00883	Chaperonin 10 Kd subunit
CY96_RS00615	SM00448	cheY-homologous receiver domain
CY96_RS00615	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS00620	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS00620	SM00387	Histidine kinase-like ATPases
CY96_RS00620	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS00665	SM01022	CY96_RS00665
CY96_RS00680	SM00382	ATPases associated with a variety of cellular activities
CY96_RS00685	SM00387	Histidine kinase-like ATPases
CY96_RS00685	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS00690	SM00448	cheY-homologous receiver domain
CY96_RS00690	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS00785	SM01001	AIR carboxylase
CY96_RS00795	SM00998	Adenylosuccinate lyase C-terminus
CY96_RS00810	SM01211	CY96_RS00810
CY96_RS00835	SM00798	AICARFT/IMPCHase bienzyme
CY96_RS00835	SM00851	MGS-like domain
CY96_RS00840	SM01209	CY96_RS00840
CY96_RS00840	SM01210	CY96_RS00840
CY96_RS00850	SM00244	prohibitin homologues
CY96_RS00875	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CY96_RS00875	SM00292	breast cancer carboxy-terminal domain
CY96_RS00875	SM00532	Ligase N family
CY96_RS00900	SM00382	ATPases associated with a variety of cellular activities
CY96_RS00900	SM00930	CY96_RS00900
CY96_RS00930	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS00950	SM00845	GatB domain
CY96_RS00955	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CY96_RS00970	SM00091	PAS domain
CY96_RS00970	SM00382	ATPases associated with a variety of cellular activities
CY96_RS01035	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CY96_RS01080	SM01007	Class II Aldolase and Adducin N-terminal domain
CY96_RS01145	SM00387	Histidine kinase-like ATPases
CY96_RS01145	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS01190	SM00062	Bacterial periplasmic substrate-binding proteins
CY96_RS01190	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CY96_RS01195	SM00382	ATPases associated with a variety of cellular activities
CY96_RS01200	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS01200	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS01230	SM00100	Cyclic nucleotide-monophosphate binding domain
CY96_RS01230	SM00419	helix_turn_helix, cAMP Regulatory protein
CY96_RS01245	SM00642	Alpha-amylase domain
CY96_RS01265	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CY96_RS01265	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CY96_RS01265	SM00493	CY96_RS01265
CY96_RS01285	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS01285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS01310	SM00382	ATPases associated with a variety of cellular activities
CY96_RS01315	SM00060	Fibronectin type 3 domain
CY96_RS01315	SM00636	CY96_RS01315
CY96_RS01315	SM00637	CY96_RS01315
CY96_RS01350	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS01370	SM00946	Prolyl-tRNA synthetase, C-terminal
CY96_RS01415	SM00831	Cation transporter/ATPase, N-terminus
CY96_RS01425	SM00226	Low molecular weight phosphatase family
CY96_RS01520	SM00478	endonuclease III
CY96_RS01540	SM00382	ATPases associated with a variety of cellular activities
CY96_RS01560	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS01615	SM00984	UDP binding domain
CY96_RS01700	SM00478	endonuclease III
CY96_RS01700	SM00525	CY96_RS01700
CY96_RS01725	SM00382	ATPases associated with a variety of cellular activities
CY96_RS01745	SM00382	ATPases associated with a variety of cellular activities
CY96_RS01900	SM00567	E-Z type HEAT repeats
CY96_RS01915	SM00052	Putative diguanylate phosphodiesterase
CY96_RS01915	SM00091	PAS domain
CY96_RS01915	SM00267	diguanylate cyclase
CY96_RS01925	SM00763	PrkA AAA domain
CY96_RS01940	SM00365	Leucine-rich repeat, SDS22-like subfamily
CY96_RS01940	SM00725	NEAr Transporter domain
CY96_RS01955	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CY96_RS01965	SM00244	prohibitin homologues
CY96_RS01970	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS01970	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS01975	SM00091	PAS domain
CY96_RS01975	SM00387	Histidine kinase-like ATPases
CY96_RS01980	SM00448	cheY-homologous receiver domain
CY96_RS02000	SM00248	ankyrin repeats
CY96_RS02015	SM00382	ATPases associated with a variety of cellular activities
CY96_RS02040	SM00448	cheY-homologous receiver domain
CY96_RS02040	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS02045	SM00387	Histidine kinase-like ATPases
CY96_RS02045	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS02060	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS02060	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS02065	SM00387	Histidine kinase-like ATPases
CY96_RS02070	SM00448	cheY-homologous receiver domain
CY96_RS02080	SM00919	Malic enzyme, NAD binding domain
CY96_RS02080	SM01274	CY96_RS02080
CY96_RS02095	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS02105	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS02105	SM00387	Histidine kinase-like ATPases
CY96_RS02105	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS02110	SM00448	cheY-homologous receiver domain
CY96_RS02110	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS02130	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CY96_RS02130	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CY96_RS02145	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CY96_RS02145	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CY96_RS02160	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS02175	SM00028	Tetratricopeptide repeats
CY96_RS02175	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS02220	SM01091	Transporter associated domain
CY96_RS02235	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS02265	SM00382	ATPases associated with a variety of cellular activities
CY96_RS02290	SM00327	von Willebrand factor (vWF) type A domain
CY96_RS02295	SM00382	ATPases associated with a variety of cellular activities
CY96_RS02300	SM00155	Phospholipase D. Active site motifs.
CY96_RS02310	SM00052	Putative diguanylate phosphodiesterase
CY96_RS02310	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CY96_RS02310	SM00267	diguanylate cyclase
CY96_RS02320	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS02320	SM00866	CY96_RS02320
CY96_RS02330	SM00642	Alpha-amylase domain
CY96_RS02365	SM00382	ATPases associated with a variety of cellular activities
CY96_RS02370	SM00062	Bacterial periplasmic substrate-binding proteins
CY96_RS02370	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CY96_RS02410	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS02410	SM00387	Histidine kinase-like ATPases
CY96_RS02410	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS02415	SM00448	cheY-homologous receiver domain
CY96_RS02415	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS02455	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS02465	SM00354	helix_turn _helix lactose operon repressor
CY96_RS02480	SM00382	ATPases associated with a variety of cellular activities
CY96_RS02515	SM00829	Enoylreductase
CY96_RS02525	SM00770	Zinc dependent phospholipase C (alpha toxin)
CY96_RS02565	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS02575	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS02625	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS02725	SM00899	CY96_RS02725
CY96_RS02860	SM00116	Domain in cystathionine beta-synthase and other proteins.
CY96_RS02880	SM00287	Bacterial SH3 domain homologues
CY96_RS02890	SM00382	ATPases associated with a variety of cellular activities
CY96_RS02980	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS03025	SM00640	Glycosyl hydrolases family 32
CY96_RS03035	SM00354	helix_turn _helix lactose operon repressor
CY96_RS03105	SM00450	Rhodanese Homology Domain
CY96_RS03115	SM00450	Rhodanese Homology Domain
CY96_RS03120	SM00450	Rhodanese Homology Domain
CY96_RS03120	SM00849	Metallo-beta-lactamase superfamily
CY96_RS03130	SM00450	Rhodanese Homology Domain
CY96_RS03135	SM00450	Rhodanese Homology Domain
CY96_RS03160	SM00829	Enoylreductase
CY96_RS03210	SM00287	Bacterial SH3 domain homologues
CY96_RS03220	SM00382	ATPases associated with a variety of cellular activities
CY96_RS03275	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
CY96_RS03375	SM00344	helix_turn_helix ASNC type
CY96_RS03390	SM00422	helix_turn_helix, mercury resistance
CY96_RS03420	SM00448	cheY-homologous receiver domain
CY96_RS03420	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS03425	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS03425	SM00387	Histidine kinase-like ATPases
CY96_RS03425	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS03435	SM00382	ATPases associated with a variety of cellular activities
CY96_RS03445	SM00382	ATPases associated with a variety of cellular activities
CY96_RS03455	SM00849	Metallo-beta-lactamase superfamily
CY96_RS03500	SM01060	CY96_RS03500
CY96_RS03535	SM00382	ATPases associated with a variety of cellular activities
CY96_RS03540	SM00382	ATPases associated with a variety of cellular activities
CY96_RS03545	SM00062	Bacterial periplasmic substrate-binding proteins
CY96_RS03545	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CY96_RS03555	SM00382	ATPases associated with a variety of cellular activities
CY96_RS03625	SM00644	CY96_RS03625
CY96_RS03630	SM00729	Elongator protein 3, MiaB family, Radical SAM
CY96_RS03665	SM00047	Lysozyme subfamily 2
CY96_RS03700	SM00646	CY96_RS03700
CY96_RS03745	SM00382	ATPases associated with a variety of cellular activities
CY96_RS03750	SM00382	ATPases associated with a variety of cellular activities
CY96_RS03760	SM00849	Metallo-beta-lactamase superfamily
CY96_RS03855	SM00091	PAS domain
CY96_RS03855	SM00387	Histidine kinase-like ATPases
CY96_RS03860	SM00448	cheY-homologous receiver domain
CY96_RS03895	SM00422	helix_turn_helix, mercury resistance
CY96_RS03940	SM00091	PAS domain
CY96_RS03940	SM00382	ATPases associated with a variety of cellular activities
CY96_RS03990	SM00894	Excalibur calcium-binding domain
CY96_RS04000	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS04110	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS04150	SM00287	Bacterial SH3 domain homologues
CY96_RS04165	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS04175	SM00460	Transglutaminase/protease-like homologues
CY96_RS04245	SM00331	Sigma factor PP2C-like phosphatases
CY96_RS04245	SM00448	cheY-homologous receiver domain
CY96_RS04250	SM00138	Methyltransferase, chemotaxis proteins 
CY96_RS04255	SM00387	Histidine kinase-like ATPases
CY96_RS04255	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS04255	SM00448	cheY-homologous receiver domain
CY96_RS04290	SM00829	Enoylreductase
CY96_RS04325	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CY96_RS04355	SM00028	Tetratricopeptide repeats
CY96_RS04385	SM00835	Cupin
CY96_RS04390	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS04460	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS04475	SM00382	ATPases associated with a variety of cellular activities
CY96_RS04645	SM00354	helix_turn _helix lactose operon repressor
CY96_RS04655	SM00849	Metallo-beta-lactamase superfamily
CY96_RS04695	SM00382	ATPases associated with a variety of cellular activities
CY96_RS04710	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CY96_RS04725	SM00342	helix_turn_helix, arabinose operon control protein
CY96_RS04725	SM00871	Bacterial transcription activator, effector binding domain
CY96_RS04735	SM00387	Histidine kinase-like ATPases
CY96_RS04735	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS04740	SM00448	cheY-homologous receiver domain
CY96_RS04740	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS04765	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS04765	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS04800	SM00357	Cold shock protein domain
CY96_RS04915	SM01060	CY96_RS04915
CY96_RS04925	SM00642	Alpha-amylase domain
CY96_RS04935	SM00316	Ribosomal protein S1-like RNA-binding domain
CY96_RS04980	SM00382	ATPases associated with a variety of cellular activities
CY96_RS04980	SM01086	C-terminal, D2-small domain, of ClpB protein
CY96_RS05010	SM00825	Beta-ketoacyl synthase
CY96_RS05055	SM00382	ATPases associated with a variety of cellular activities
CY96_RS05060	SM00382	ATPases associated with a variety of cellular activities
CY96_RS05100	SM00155	Phospholipase D. Active site motifs.
CY96_RS05130	SM01118	CY96_RS05130
CY96_RS05140	SM00954	Region found in RelA / SpoT proteins
CY96_RS05370	SM01324	CY96_RS05370
CY96_RS05410	SM00861	Transketolase, pyrimidine binding domain
CY96_RS05415	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS05445	SM00382	ATPases associated with a variety of cellular activities
CY96_RS05500	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS05520	SM00382	ATPases associated with a variety of cellular activities
CY96_RS05540	SM00014	Acid phosphatase homologues
CY96_RS05590	SM00448	cheY-homologous receiver domain
CY96_RS05590	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS05595	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS05595	SM00387	Histidine kinase-like ATPases
CY96_RS05595	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS05600	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS05600	SM00895	CY96_RS05600
CY96_RS05670	SM00822	CY96_RS05670
CY96_RS05705	SM00382	ATPases associated with a variety of cellular activities
CY96_RS05730	SM00420	helix_turn_helix, Deoxyribose operon repressor
CY96_RS05730	SM01134	CY96_RS05730
CY96_RS05740	SM00365	Leucine-rich repeat, SDS22-like subfamily
CY96_RS05740	SM00369	Leucine-rich repeats, typical (most populated) subfamily
CY96_RS05740	SM00725	NEAr Transporter domain
CY96_RS05745	SM01007	Class II Aldolase and Adducin N-terminal domain
CY96_RS05765	SM00387	Histidine kinase-like ATPases
CY96_RS05765	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS05770	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS05790	SM00387	Histidine kinase-like ATPases
CY96_RS05790	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS05870	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS05875	SM00382	ATPases associated with a variety of cellular activities
CY96_RS05885	SM00382	ATPases associated with a variety of cellular activities
CY96_RS05905	SM00344	helix_turn_helix ASNC type
CY96_RS06030	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS06105	SM00917	LeuA allosteric (dimerisation) domain
CY96_RS06110	SM01329	CY96_RS06110
CY96_RS06295	SM00387	Histidine kinase-like ATPases
CY96_RS06300	SM00421	helix_turn_helix, Lux Regulon
CY96_RS06300	SM00448	cheY-homologous receiver domain
CY96_RS06395	SM00091	PAS domain
CY96_RS06395	SM00387	Histidine kinase-like ATPases
CY96_RS06395	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS06415	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS06415	SM00387	Histidine kinase-like ATPases
CY96_RS06415	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS06465	SM00363	S4 RNA-binding domain
CY96_RS06485	SM00448	cheY-homologous receiver domain
CY96_RS06485	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS06490	SM00091	PAS domain
CY96_RS06490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS06490	SM00387	Histidine kinase-like ATPases
CY96_RS06490	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS06500	SM00257	Lysin motif
CY96_RS06525	SM00487	DEAD-like helicases superfamily
CY96_RS06525	SM00490	helicase superfamily c-terminal domain
CY96_RS06535	SM00257	Lysin motif
CY96_RS06545	SM00422	helix_turn_helix, mercury resistance
CY96_RS06555	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CY96_RS06570	SM00644	CY96_RS06570
CY96_RS06580	SM00870	CY96_RS06580
CY96_RS06595	SM00316	Ribosomal protein S1-like RNA-binding domain
CY96_RS06600	SM01240	CY96_RS06600
CY96_RS06655	SM00411	bacterial (prokaryotic) histone like domain
CY96_RS06680	SM00562	CY96_RS06680
CY96_RS06700	SM00028	Tetratricopeptide repeats
CY96_RS06705	SM00914	CY96_RS06705
CY96_RS06750	SM00986	Uracil DNA glycosylase superfamily
CY96_RS06750	SM00987	UreE urease accessory protein, C-terminal domain 
CY96_RS06770	SM00851	MGS-like domain
CY96_RS06820	SM00479	CY96_RS06820
CY96_RS06820	SM00487	DEAD-like helicases superfamily
CY96_RS06820	SM00491	CY96_RS06820
CY96_RS06845	SM00478	endonuclease III
CY96_RS06855	SM00060	Fibronectin type 3 domain
CY96_RS06905	SM00981	CY96_RS06905
CY96_RS06915	SM00491	CY96_RS06915
CY96_RS06970	SM00450	Rhodanese Homology Domain
CY96_RS07000	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CY96_RS07000	SM00475	5'-3' exonuclease
CY96_RS07110	SM00357	Cold shock protein domain
CY96_RS07160	SM00849	Metallo-beta-lactamase superfamily
CY96_RS07165	SM00422	helix_turn_helix, mercury resistance
CY96_RS07165	SM00871	Bacterial transcription activator, effector binding domain
CY96_RS07235	SM00448	cheY-homologous receiver domain
CY96_RS07240	SM00073	Histidine Phosphotransfer domain
CY96_RS07240	SM00260	Two component signalling adaptor domain
CY96_RS07240	SM00387	Histidine kinase-like ATPases
CY96_RS07240	SM01231	CY96_RS07240
CY96_RS07260	SM00138	Methyltransferase, chemotaxis proteins 
CY96_RS07335	SM00382	ATPases associated with a variety of cellular activities
CY96_RS07370	SM00260	Two component signalling adaptor domain
CY96_RS07370	SM00448	cheY-homologous receiver domain
CY96_RS07440	SM00382	ATPases associated with a variety of cellular activities
CY96_RS07440	SM00962	SRP54-type protein, GTPase domain
CY96_RS07450	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CY96_RS07495	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS07515	SM00382	ATPases associated with a variety of cellular activities
CY96_RS07530	SM00849	Metallo-beta-lactamase superfamily
CY96_RS07530	SM01027	Beta-Casp domain
CY96_RS07555	SM00855	Phosphoglycerate mutase family
CY96_RS07575	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS07615	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS07615	SM00895	CY96_RS07615
CY96_RS07630	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CY96_RS07655	SM00422	helix_turn_helix, mercury resistance
CY96_RS07730	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS07880	SM00257	Lysin motif
CY96_RS07880	SM00644	CY96_RS07880
CY96_RS07945	SM00482	DNA polymerase A domain
CY96_RS08015	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS08050	SM00421	helix_turn_helix, Lux Regulon
CY96_RS08050	SM00448	cheY-homologous receiver domain
CY96_RS08060	SM00382	ATPases associated with a variety of cellular activities
CY96_RS08080	SM00155	Phospholipase D. Active site motifs.
CY96_RS08100	SM00919	Malic enzyme, NAD binding domain
CY96_RS08100	SM01274	CY96_RS08100
CY96_RS08105	SM00387	Histidine kinase-like ATPases
CY96_RS08110	SM00448	cheY-homologous receiver domain
CY96_RS08115	SM00487	DEAD-like helicases superfamily
CY96_RS08115	SM00490	helicase superfamily c-terminal domain
CY96_RS08320	SM00854	Bacterial capsule synthesis protein PGA_cap
CY96_RS08350	SM00850	LytTr DNA-binding domain
CY96_RS08385	SM00448	cheY-homologous receiver domain
CY96_RS08385	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS08390	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS08390	SM00387	Histidine kinase-like ATPases
CY96_RS08390	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS08405	SM00450	Rhodanese Homology Domain
CY96_RS08470	SM01133	CY96_RS08470
CY96_RS08480	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CY96_RS08520	SM01011	Aminopeptidase P, N-terminal domain
CY96_RS08540	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CY96_RS08540	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CY96_RS08540	SM00493	CY96_RS08540
CY96_RS08630	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CY96_RS08640	SM00382	ATPases associated with a variety of cellular activities
CY96_RS08645	SM00382	ATPases associated with a variety of cellular activities
CY96_RS08680	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS08700	SM00382	ATPases associated with a variety of cellular activities
CY96_RS08705	SM00382	ATPases associated with a variety of cellular activities
CY96_RS08770	SM00287	Bacterial SH3 domain homologues
CY96_RS08780	SM00382	ATPases associated with a variety of cellular activities
CY96_RS08785	SM00448	cheY-homologous receiver domain
CY96_RS08785	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS08790	SM00387	Histidine kinase-like ATPases
CY96_RS08790	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS08860	SM00448	cheY-homologous receiver domain
CY96_RS08860	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS08865	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS08865	SM00387	Histidine kinase-like ATPases
CY96_RS08865	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS08935	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS08960	SM00460	Transglutaminase/protease-like homologues
CY96_RS08985	SM00966	SpoVT / AbrB like domain 
CY96_RS09025	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS09025	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS09090	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CY96_RS09145	SM00855	Phosphoglycerate mutase family
CY96_RS09195	SM00155	Phospholipase D. Active site motifs.
CY96_RS09220	SM01091	Transporter associated domain
CY96_RS09295	SM00244	prohibitin homologues
CY96_RS09305	SM00855	Phosphoglycerate mutase family
CY96_RS09325	SM01005	Alanine racemase, C-terminal domain
CY96_RS09345	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS09545	SM00487	DEAD-like helicases superfamily
CY96_RS09545	SM00490	helicase superfamily c-terminal domain
CY96_RS09565	SM00829	Enoylreductase
CY96_RS09585	SM00849	Metallo-beta-lactamase superfamily
CY96_RS09600	SM00460	Transglutaminase/protease-like homologues
CY96_RS09625	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CY96_RS09645	SM00100	Cyclic nucleotide-monophosphate binding domain
CY96_RS09645	SM00419	helix_turn_helix, cAMP Regulatory protein
CY96_RS09650	SM00729	Elongator protein 3, MiaB family, Radical SAM
CY96_RS09660	SM00852	Probable molybdopterin binding domain
CY96_RS09725	SM00894	Excalibur calcium-binding domain
CY96_RS09775	SM00028	Tetratricopeptide repeats
CY96_RS09790	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CY96_RS09795	SM00382	ATPases associated with a variety of cellular activities
CY96_RS09820	SM00567	E-Z type HEAT repeats
CY96_RS09820	SM00932	Scaffold protein Nfu/NifU N terminal
CY96_RS09840	SM00836	DALR anticodon binding domain
CY96_RS09840	SM01016	Arginyl tRNA synthetase N terminal dom
CY96_RS09860	SM00028	Tetratricopeptide repeats
CY96_RS09940	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS09955	SM00382	ATPases associated with a variety of cellular activities
CY96_RS10010	SM00563	Phosphate acyltransferases
CY96_RS10070	SM00646	CY96_RS10070
CY96_RS10115	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CY96_RS10120	SM00421	helix_turn_helix, Lux Regulon
CY96_RS10120	SM00448	cheY-homologous receiver domain
CY96_RS10135	SM00829	Enoylreductase
CY96_RS10160	SM01350	CY96_RS10160
CY96_RS10190	SM00382	ATPases associated with a variety of cellular activities
CY96_RS10230	SM01091	Transporter associated domain
CY96_RS10245	SM00387	Histidine kinase-like ATPases
CY96_RS10245	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS10260	SM00882	Coenzyme A transferase
CY96_RS10265	SM00882	Coenzyme A transferase
CY96_RS10280	SM00382	ATPases associated with a variety of cellular activities
CY96_RS10320	SM00219	Tyrosine kinase, catalytic domain
CY96_RS10330	SM00014	Acid phosphatase homologues
CY96_RS10510	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS10530	SM00822	CY96_RS10530
CY96_RS10550	SM00823	Phosphopantetheine attachment site
CY96_RS10550	SM00824	Thioesterase
CY96_RS10555	SM00923	MbtH-like protein
CY96_RS10575	SM00411	bacterial (prokaryotic) histone like domain
CY96_RS10615	SM00363	S4 RNA-binding domain
CY96_RS10620	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CY96_RS10625	SM00382	ATPases associated with a variety of cellular activities
CY96_RS10645	SM00849	Metallo-beta-lactamase superfamily
CY96_RS10670	SM00100	Cyclic nucleotide-monophosphate binding domain
CY96_RS10685	SM00849	Metallo-beta-lactamase superfamily
CY96_RS10705	SM01059	Chloramphenicol acetyltransferase
CY96_RS10730	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS10765	SM00357	Cold shock protein domain
CY96_RS10790	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CY96_RS10830	SM00382	ATPases associated with a variety of cellular activities
CY96_RS10835	SM00382	ATPases associated with a variety of cellular activities
CY96_RS10880	SM00835	Cupin
CY96_RS10950	SM01207	CY96_RS10950
CY96_RS10965	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS10980	SM00849	Metallo-beta-lactamase superfamily
CY96_RS10985	SM00487	DEAD-like helicases superfamily
CY96_RS10985	SM00490	helicase superfamily c-terminal domain
CY96_RS11045	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS11050	SM00855	Phosphoglycerate mutase family
CY96_RS11090	SM00421	helix_turn_helix, Lux Regulon
CY96_RS11095	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS11100	SM00966	SpoVT / AbrB like domain 
CY96_RS11120	SM00936	Penicillin-binding protein 5, C-terminal domain 
CY96_RS11140	SM00823	Phosphopantetheine attachment site
CY96_RS11145	SM00823	Phosphopantetheine attachment site
CY96_RS11190	SM00047	Lysozyme subfamily 2
CY96_RS11275	SM00116	Domain in cystathionine beta-synthase and other proteins.
CY96_RS11275	SM00924	MgtE intracellular N domain
CY96_RS11325	SM00382	ATPases associated with a variety of cellular activities
CY96_RS11355	SM00878	Biotin carboxylase C-terminal domain
CY96_RS11425	SM00387	Histidine kinase-like ATPases
CY96_RS11425	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS11430	SM00448	cheY-homologous receiver domain
CY96_RS11430	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS11465	SM00342	helix_turn_helix, arabinose operon control protein
CY96_RS11495	SM00382	ATPases associated with a variety of cellular activities
CY96_RS11515	SM00422	helix_turn_helix, mercury resistance
CY96_RS11515	SM00871	Bacterial transcription activator, effector binding domain
CY96_RS11570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS11635	SM00448	cheY-homologous receiver domain
CY96_RS11635	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS11640	SM00387	Histidine kinase-like ATPases
CY96_RS11645	SM00382	ATPases associated with a variety of cellular activities
CY96_RS11655	SM00382	ATPases associated with a variety of cellular activities
CY96_RS11685	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS11690	SM01209	CY96_RS11690
CY96_RS11805	SM00091	PAS domain
CY96_RS11805	SM00387	Histidine kinase-like ATPases
CY96_RS11805	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS11835	SM00382	ATPases associated with a variety of cellular activities
CY96_RS11845	SM00387	Histidine kinase-like ATPases
CY96_RS11845	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS11875	SM00645	Papain family cysteine protease
CY96_RS11905	SM00448	cheY-homologous receiver domain
CY96_RS11905	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS11910	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS11910	SM00387	Histidine kinase-like ATPases
CY96_RS11910	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS11915	SM00829	Enoylreductase
CY96_RS11920	SM00014	Acid phosphatase homologues
CY96_RS11925	SM00740	CY96_RS11925
CY96_RS11990	SM00287	Bacterial SH3 domain homologues
CY96_RS12005	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS12070	SM00480	DNA polymerase III beta subunit
CY96_RS12155	SM00465	GIY-YIG type nucleases (URI domain)
CY96_RS12220	SM00448	cheY-homologous receiver domain
CY96_RS12220	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS12225	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS12225	SM00387	Histidine kinase-like ATPases
CY96_RS12225	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS12240	SM00382	ATPases associated with a variety of cellular activities
CY96_RS12275	SM00642	Alpha-amylase domain
CY96_RS12295	SM00871	Bacterial transcription activator, effector binding domain
CY96_RS12310	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS12435	SM00382	ATPases associated with a variety of cellular activities
CY96_RS12455	SM00420	helix_turn_helix, Deoxyribose operon repressor
CY96_RS12455	SM01134	CY96_RS12455
CY96_RS12495	SM00861	Transketolase, pyrimidine binding domain
CY96_RS12555	SM00116	Domain in cystathionine beta-synthase and other proteins.
CY96_RS12555	SM00382	ATPases associated with a variety of cellular activities
CY96_RS12590	SM00060	Fibronectin type 3 domain
CY96_RS12690	SM00341	Helicase and RNase D C-terminal
CY96_RS12690	SM00487	DEAD-like helicases superfamily
CY96_RS12690	SM00490	helicase superfamily c-terminal domain
CY96_RS12690	SM00956	CY96_RS12690
CY96_RS12715	SM00646	CY96_RS12715
CY96_RS12730	SM01131	CY96_RS12730
CY96_RS12745	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CY96_RS12770	SM01130	CY96_RS12770
CY96_RS12790	SM00091	PAS domain
CY96_RS12790	SM00382	ATPases associated with a variety of cellular activities
CY96_RS12870	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CY96_RS12895	SM00248	ankyrin repeats
CY96_RS12920	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CY96_RS12930	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS12930	SM00387	Histidine kinase-like ATPases
CY96_RS12930	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS12935	SM00448	cheY-homologous receiver domain
CY96_RS12935	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS13140	SM00382	ATPases associated with a variety of cellular activities
CY96_RS13145	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS13215	SM00062	Bacterial periplasmic substrate-binding proteins
CY96_RS13220	SM00382	ATPases associated with a variety of cellular activities
CY96_RS13235	SM00028	Tetratricopeptide repeats
CY96_RS13315	SM00382	ATPases associated with a variety of cellular activities
CY96_RS13355	SM00830	Chorismate mutase type II
CY96_RS13395	SM00287	Bacterial SH3 domain homologues
CY96_RS13450	SM00382	ATPases associated with a variety of cellular activities
CY96_RS13470	SM01133	CY96_RS13470
CY96_RS13490	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS13510	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CY96_RS13525	SM00346	helix_turn_helix isocitrate lyase regulation
CY96_RS13555	SM00098	Alkaline phosphatase homologues
CY96_RS13565	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS13680	SM01060	CY96_RS13680
CY96_RS13765	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS13770	SM00889	Elongation factor G, domain IV
CY96_RS13785	SM00773	Proposed nucleic acid binding domain
CY96_RS13790	SM00860	SMI1 / KNR4 family
CY96_RS13800	SM00382	ATPases associated with a variety of cellular activities
CY96_RS13825	SM00342	helix_turn_helix, arabinose operon control protein
CY96_RS13825	SM00871	Bacterial transcription activator, effector binding domain
CY96_RS13855	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS13995	SM00797	Allophanate hydrolase subunit 2
CY96_RS14000	SM00796	Allophanate hydrolase subunit 1
CY96_RS14005	SM00346	helix_turn_helix isocitrate lyase regulation
CY96_RS14020	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS14125	SM00344	helix_turn_helix ASNC type
CY96_RS14135	SM00849	Metallo-beta-lactamase superfamily
CY96_RS14170	SM00870	CY96_RS14170
CY96_RS14175	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS14200	SM00387	Histidine kinase-like ATPases
CY96_RS14200	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS14205	SM00448	cheY-homologous receiver domain
CY96_RS14205	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS14215	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CY96_RS14215	SM00091	PAS domain
CY96_RS14215	SM00387	Histidine kinase-like ATPases
CY96_RS14215	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS14240	SM00342	helix_turn_helix, arabinose operon control protein
CY96_RS14255	SM00465	GIY-YIG type nucleases (URI domain)
CY96_RS14285	SM00448	cheY-homologous receiver domain
CY96_RS14290	SM00387	Histidine kinase-like ATPases
CY96_RS14380	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CY96_RS14450	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS14460	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS14460	SM00387	Histidine kinase-like ATPases
CY96_RS14460	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS14465	SM00448	cheY-homologous receiver domain
CY96_RS14465	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS14560	SM00226	Low molecular weight phosphatase family
CY96_RS14575	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS14680	SM00421	helix_turn_helix, Lux Regulon
CY96_RS14680	SM00448	cheY-homologous receiver domain
CY96_RS14755	SM00382	ATPases associated with a variety of cellular activities
CY96_RS14765	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS14775	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS14775	SM00387	Histidine kinase-like ATPases
CY96_RS14775	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS14780	SM00448	cheY-homologous receiver domain
CY96_RS14780	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS14850	SM00644	CY96_RS14850
CY96_RS14920	SM00860	SMI1 / KNR4 family
CY96_RS15020	SM00860	SMI1 / KNR4 family
CY96_RS15040	SM00860	SMI1 / KNR4 family
CY96_RS15060	SM00028	Tetratricopeptide repeats
CY96_RS15145	SM00860	SMI1 / KNR4 family
CY96_RS15185	SM00857	Resolvase, N terminal domain
CY96_RS15200	SM00860	SMI1 / KNR4 family
CY96_RS15255	SM00854	Bacterial capsule synthesis protein PGA_cap
CY96_RS15280	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS15335	SM00382	ATPases associated with a variety of cellular activities
CY96_RS15450	SM00382	ATPases associated with a variety of cellular activities
CY96_RS15465	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS15555	SM00028	Tetratricopeptide repeats
CY96_RS15580	SM01091	Transporter associated domain
CY96_RS15585	SM00422	helix_turn_helix, mercury resistance
CY96_RS15660	SM01350	CY96_RS15660
CY96_RS15665	SM00861	Transketolase, pyrimidine binding domain
CY96_RS15680	SM00829	Enoylreductase
CY96_RS15690	SM01276	CY96_RS15690
CY96_RS15695	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS15695	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS15750	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS15760	SM00914	CY96_RS15760
CY96_RS15780	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS15780	SM00866	CY96_RS15780
CY96_RS15805	SM00849	Metallo-beta-lactamase superfamily
CY96_RS15850	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS15855	SM00636	CY96_RS15855
CY96_RS15890	SM00871	Bacterial transcription activator, effector binding domain
CY96_RS15905	SM00382	ATPases associated with a variety of cellular activities
CY96_RS15925	SM00849	Metallo-beta-lactamase superfamily
CY96_RS15975	SM00849	Metallo-beta-lactamase superfamily
CY96_RS16085	SM00829	Enoylreductase
CY96_RS16100	SM00855	Phosphoglycerate mutase family
CY96_RS16110	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CY96_RS16110	SM00534	ATPase domain of DNA mismatch repair MUTS family
CY96_RS16120	SM00642	Alpha-amylase domain
CY96_RS16175	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS16180	SM00829	Enoylreductase
CY96_RS16190	SM00028	Tetratricopeptide repeats
CY96_RS16250	SM00450	Rhodanese Homology Domain
CY96_RS16250	SM00849	Metallo-beta-lactamase superfamily
CY96_RS16285	SM00028	Tetratricopeptide repeats
CY96_RS16295	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS16295	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS16295	SM00319	Homologues of the ligand binding domain of Tar
CY96_RS16330	SM00052	Putative diguanylate phosphodiesterase
CY96_RS16330	SM00091	PAS domain
CY96_RS16330	SM00267	diguanylate cyclase
CY96_RS16335	SM00382	ATPases associated with a variety of cellular activities
CY96_RS16360	SM00387	Histidine kinase-like ATPases
CY96_RS16360	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS16365	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CY96_RS16410	SM00479	CY96_RS16410
CY96_RS16415	SM00357	Cold shock protein domain
CY96_RS16440	SM01022	CY96_RS16440
CY96_RS16495	SM00822	CY96_RS16495
CY96_RS16550	SM00852	Probable molybdopterin binding domain
CY96_RS16565	SM00729	Elongator protein 3, MiaB family, Radical SAM
CY96_RS16585	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CY96_RS16585	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CY96_RS16685	SM00382	ATPases associated with a variety of cellular activities
CY96_RS16700	SM00434	DNA Topoisomerase IV
CY96_RS16705	SM00387	Histidine kinase-like ATPases
CY96_RS16705	SM00433	TopoisomeraseII
CY96_RS16715	SM00881	CoA binding domain
CY96_RS16720	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CY96_RS16725	SM00448	cheY-homologous receiver domain
CY96_RS16725	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS16740	SM01207	CY96_RS16740
CY96_RS16755	SM00257	Lysin motif
CY96_RS16755	SM00636	CY96_RS16755
CY96_RS16775	SM00479	CY96_RS16775
CY96_RS16795	SM00382	ATPases associated with a variety of cellular activities
CY96_RS16840	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CY96_RS16875	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS16905	SM00644	CY96_RS16905
CY96_RS16905	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
CY96_RS16910	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CY96_RS16925	SM00091	PAS domain
CY96_RS16925	SM00387	Histidine kinase-like ATPases
CY96_RS16925	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS16955	SM01058	CarD-like/TRCF domain
CY96_RS17040	SM00382	ATPases associated with a variety of cellular activities
CY96_RS17100	SM00287	Bacterial SH3 domain homologues
CY96_RS17100	SM00641	Glycosyl hydrolases family 25
CY96_RS17105	SM00382	ATPases associated with a variety of cellular activities
CY96_RS17110	SM00382	ATPases associated with a variety of cellular activities
CY96_RS17125	SM00861	Transketolase, pyrimidine binding domain
CY96_RS17140	SM00382	ATPases associated with a variety of cellular activities
CY96_RS17145	SM00062	Bacterial periplasmic substrate-binding proteins
CY96_RS17160	SM00857	Resolvase, N terminal domain
CY96_RS17195	SM00644	CY96_RS17195
CY96_RS17210	SM00644	CY96_RS17210
CY96_RS17250	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS17255	SM01230	CY96_RS17255
CY96_RS17260	SM00422	helix_turn_helix, mercury resistance
CY96_RS17280	SM00382	ATPases associated with a variety of cellular activities
CY96_RS17310	SM00287	Bacterial SH3 domain homologues
CY96_RS17325	SM00420	helix_turn_helix, Deoxyribose operon repressor
CY96_RS17325	SM01134	CY96_RS17325
CY96_RS17355	SM00636	CY96_RS17355
CY96_RS17370	SM00411	bacterial (prokaryotic) histone like domain
CY96_RS17415	SM00342	helix_turn_helix, arabinose operon control protein
CY96_RS17475	SM00346	helix_turn_helix isocitrate lyase regulation
CY96_RS17490	SM00382	ATPases associated with a variety of cellular activities
CY96_RS17510	SM00342	helix_turn_helix, arabinose operon control protein
CY96_RS17520	SM00478	endonuclease III
CY96_RS17545	SM00052	Putative diguanylate phosphodiesterase
CY96_RS17545	SM00091	PAS domain
CY96_RS17545	SM00267	diguanylate cyclase
CY96_RS17595	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS17605	SM00148	Phospholipase C, catalytic domain (part); domain X
CY96_RS17615	SM00257	Lysin motif
CY96_RS17640	SM00853	MutL C terminal dimerisation domain
CY96_RS17640	SM01340	CY96_RS17640
CY96_RS17645	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CY96_RS17645	SM00534	ATPase domain of DNA mismatch repair MUTS family
CY96_RS17660	SM00729	Elongator protein 3, MiaB family, Radical SAM
CY96_RS17690	SM00322	K homology RNA-binding domain
CY96_RS17690	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CY96_RS17700	SM00382	ATPases associated with a variety of cellular activities
CY96_RS17705	SM00852	Probable molybdopterin binding domain
CY96_RS17755	SM00382	ATPases associated with a variety of cellular activities
CY96_RS17765	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS17765	SM00866	CY96_RS17765
CY96_RS17770	SM00382	ATPases associated with a variety of cellular activities
CY96_RS17770	SM00843	CY96_RS17770
CY96_RS17785	SM00849	Metallo-beta-lactamase superfamily
CY96_RS17795	SM01130	CY96_RS17795
CY96_RS17805	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CY96_RS17835	SM00316	Ribosomal protein S1-like RNA-binding domain
CY96_RS17835	SM00322	K homology RNA-binding domain
CY96_RS17840	SM01387	CY96_RS17840
CY96_RS17845	SM00904	Riboflavin kinase
CY96_RS17880	SM00316	Ribosomal protein S1-like RNA-binding domain
CY96_RS17880	SM00322	K homology RNA-binding domain
CY96_RS17890	SM00479	CY96_RS17890
CY96_RS17890	SM00481	DNA polymerase alpha chain like domain
CY96_RS17900	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CY96_RS17945	SM00382	ATPases associated with a variety of cellular activities
CY96_RS17945	SM01086	C-terminal, D2-small domain, of ClpB protein
CY96_RS17965	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CY96_RS17965	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CY96_RS17965	SM00493	CY96_RS17965
CY96_RS17975	SM00881	CoA binding domain
CY96_RS18025	SM00382	ATPases associated with a variety of cellular activities
CY96_RS18025	SM00962	SRP54-type protein, GTPase domain
CY96_RS18025	SM00963	SRP54-type protein, helical bundle domain
CY96_RS18035	SM00382	ATPases associated with a variety of cellular activities
CY96_RS18035	SM00962	SRP54-type protein, GTPase domain
CY96_RS18035	SM00963	SRP54-type protein, helical bundle domain
CY96_RS18040	SM00968	SMC proteins Flexible Hinge Domain
CY96_RS18045	SM00358	Double-stranded RNA binding motif
CY96_RS18045	SM00535	Ribonuclease III family
CY96_RS18055	SM00822	CY96_RS18055
CY96_RS18060	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CY96_RS18075	SM00487	DEAD-like helicases superfamily
CY96_RS18075	SM00490	helicase superfamily c-terminal domain
CY96_RS18080	SM01120	CY96_RS18080
CY96_RS18080	SM01121	CY96_RS18080
CY96_RS18100	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
CY96_RS18115	SM00220	Serine/Threonine protein kinases, catalytic domain
CY96_RS18115	SM00740	CY96_RS18115
CY96_RS18120	SM00331	Sigma factor PP2C-like phosphatases
CY96_RS18120	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CY96_RS18145	SM00487	DEAD-like helicases superfamily
CY96_RS18145	SM00490	helicase superfamily c-terminal domain
CY96_RS18155	SM01409	CY96_RS18155
CY96_RS18160	SM00072	Guanylate kinase homologues.
CY96_RS18175	SM00831	Cation transporter/ATPase, N-terminus
CY96_RS18215	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CY96_RS18230	SM00851	MGS-like domain
CY96_RS18230	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CY96_RS18230	SM01209	CY96_RS18230
CY96_RS18235	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CY96_RS18260	SM00363	S4 RNA-binding domain
CY96_RS18285	SM00363	S4 RNA-binding domain
CY96_RS18330	SM00864	Tubulin/FtsZ family, GTPase domain
CY96_RS18330	SM00865	Tubulin/FtsZ family, C-terminal domain
CY96_RS18335	SM00842	Cell division protein FtsA
CY96_RS18375	SM00740	CY96_RS18375
CY96_RS18380	SM00740	CY96_RS18380
CY96_RS18410	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
CY96_RS18430	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CY96_RS18470	SM00855	Phosphoglycerate mutase family
CY96_RS18535	SM00878	Biotin carboxylase C-terminal domain
CY96_RS18555	SM00670	Large family of predicted nucleotide-binding domains
CY96_RS18580	SM00838	Elongation factor G C-terminus
CY96_RS18660	SM00861	Transketolase, pyrimidine binding domain
CY96_RS18690	SM00849	Metallo-beta-lactamase superfamily
CY96_RS18755	SM00052	Putative diguanylate phosphodiesterase
CY96_RS18845	SM00387	Histidine kinase-like ATPases
CY96_RS18845	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS18860	SM00354	helix_turn _helix lactose operon repressor
CY96_RS18880	SM00642	Alpha-amylase domain
CY96_RS18885	SM00642	Alpha-amylase domain
CY96_RS18890	SM00382	ATPases associated with a variety of cellular activities
CY96_RS18925	SM00382	ATPases associated with a variety of cellular activities
CY96_RS19010	SM01007	Class II Aldolase and Adducin N-terminal domain
CY96_RS19040	SM00267	diguanylate cyclase
CY96_RS19075	SM01061	CAT RNA binding domain
CY96_RS19085	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS19085	SM00866	CY96_RS19085
CY96_RS19100	SM00849	Metallo-beta-lactamase superfamily
CY96_RS19200	SM00387	Histidine kinase-like ATPases
CY96_RS19210	SM00936	Penicillin-binding protein 5, C-terminal domain 
CY96_RS19215	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS19220	SM00382	ATPases associated with a variety of cellular activities
CY96_RS19235	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS19255	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CY96_RS19350	SM00354	helix_turn _helix lactose operon repressor
CY96_RS19370	SM00704	CDGSH-type zinc finger. Function unknown.
CY96_RS19400	SM00729	Elongator protein 3, MiaB family, Radical SAM
CY96_RS19400	SM00876	Biotin and Thiamin Synthesis associated domain
CY96_RS19450	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS19485	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CY96_RS19500	SM00849	Metallo-beta-lactamase superfamily
CY96_RS19525	SM00849	Metallo-beta-lactamase superfamily
CY96_RS19540	SM00831	Cation transporter/ATPase, N-terminus
CY96_RS19580	SM00382	ATPases associated with a variety of cellular activities
CY96_RS19590	SM00062	Bacterial periplasmic substrate-binding proteins
CY96_RS19590	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CY96_RS19630	SM00861	Transketolase, pyrimidine binding domain
CY96_RS19650	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CY96_RS19665	SM00091	PAS domain
CY96_RS19665	SM00382	ATPases associated with a variety of cellular activities
CY96_RS19710	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS19735	SM00857	Resolvase, N terminal domain
CY96_RS19770	SM00448	cheY-homologous receiver domain
CY96_RS19780	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CY96_RS19795	SM00363	S4 RNA-binding domain
CY96_RS19800	SM00861	Transketolase, pyrimidine binding domain
CY96_RS19835	SM00878	Biotin carboxylase C-terminal domain
CY96_RS19885	SM00382	ATPases associated with a variety of cellular activities
CY96_RS19905	SM00841	Elongation factor P, C-terminal
CY96_RS19905	SM01185	CY96_RS19905
CY96_RS19940	SM00529	Helix-turn-helix diphteria tox regulatory element
CY96_RS19965	SM00450	Rhodanese Homology Domain
CY96_RS19975	SM00354	helix_turn _helix lactose operon repressor
CY96_RS20030	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS20060	SM00487	DEAD-like helicases superfamily
CY96_RS20060	SM00490	helicase superfamily c-terminal domain
CY96_RS20095	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
CY96_RS20130	SM00382	ATPases associated with a variety of cellular activities
CY96_RS20185	SM01018	B12 binding domain
CY96_RS20215	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS20225	SM00849	Metallo-beta-lactamase superfamily
CY96_RS20265	SM00382	ATPases associated with a variety of cellular activities
CY96_RS20330	SM00382	ATPases associated with a variety of cellular activities
CY96_RS20345	SM00518	AP endonuclease family 2
CY96_RS20350	SM00487	DEAD-like helicases superfamily
CY96_RS20350	SM00490	helicase superfamily c-terminal domain
CY96_RS20385	SM00400	zinc finger
CY96_RS20385	SM00493	CY96_RS20385
CY96_RS20385	SM00766	DNA primase DnaG DnaB-binding
CY96_RS20400	SM00116	Domain in cystathionine beta-synthase and other proteins.
CY96_RS20435	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CY96_RS20470	SM00729	Elongator protein 3, MiaB family, Radical SAM
CY96_RS20485	SM00271	DnaJ molecular chaperone homology domain
CY96_RS20505	SM00729	Elongator protein 3, MiaB family, Radical SAM
CY96_RS20515	SM00838	Elongation factor G C-terminus
CY96_RS20545	SM00849	Metallo-beta-lactamase superfamily
CY96_RS20555	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CY96_RS20575	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CY96_RS20585	SM01103	CY96_RS20585
CY96_RS20640	SM00954	Region found in RelA / SpoT proteins
CY96_RS20650	SM00098	Alkaline phosphatase homologues
CY96_RS20675	SM00855	Phosphoglycerate mutase family
CY96_RS20720	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS20745	SM00382	ATPases associated with a variety of cellular activities
CY96_RS20845	SM00732	Likely ribonuclease with RNase H fold.
CY96_RS20855	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CY96_RS20890	SM00028	Tetratricopeptide repeats
CY96_RS20910	SM00382	ATPases associated with a variety of cellular activities
CY96_RS20955	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CY96_RS20955	SM00954	Region found in RelA / SpoT proteins
CY96_RS21000	SM01323	CY96_RS21000
CY96_RS21020	SM00382	ATPases associated with a variety of cellular activities
CY96_RS21025	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CY96_RS21050	SM00257	Lysin motif
CY96_RS21105	SM00382	ATPases associated with a variety of cellular activities
CY96_RS21110	SM00387	Histidine kinase-like ATPases
CY96_RS21115	SM00448	cheY-homologous receiver domain
CY96_RS21115	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS21125	SM01317	CY96_RS21125
CY96_RS21215	SM00257	Lysin motif
CY96_RS21225	SM01004	Delta-aminolevulinic acid dehydratase
CY96_RS21250	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS21265	SM00382	ATPases associated with a variety of cellular activities
CY96_RS21265	SM00464	Found in ATP-dependent protease La (LON)
CY96_RS21270	SM00382	ATPases associated with a variety of cellular activities
CY96_RS21275	SM00382	ATPases associated with a variety of cellular activities
CY96_RS21275	SM00994	ClpX C4-type zinc finger
CY96_RS21275	SM01086	C-terminal, D2-small domain, of ClpB protein
CY96_RS21305	SM00028	Tetratricopeptide repeats
CY96_RS21345	SM00909	Sporulation and spore germination
CY96_RS21360	SM00421	helix_turn_helix, Lux Regulon
CY96_RS21380	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS21405	SM00382	ATPases associated with a variety of cellular activities
CY96_RS21455	SM00465	GIY-YIG type nucleases (URI domain)
CY96_RS21465	SM00893	Electron transfer flavoprotein domain
CY96_RS21470	SM00893	Electron transfer flavoprotein domain
CY96_RS21540	SM00382	ATPases associated with a variety of cellular activities
CY96_RS21545	SM00387	Histidine kinase-like ATPases
CY96_RS21545	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS21550	SM00448	cheY-homologous receiver domain
CY96_RS21550	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS21565	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CY96_RS21580	SM00382	ATPases associated with a variety of cellular activities
CY96_RS21595	SM00725	NEAr Transporter domain
CY96_RS21600	SM00725	NEAr Transporter domain
CY96_RS21605	SM00725	NEAr Transporter domain
CY96_RS21615	SM00363	S4 RNA-binding domain
CY96_RS21625	SM00463	Small MutS-related domain
CY96_RS21625	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CY96_RS21625	SM00534	ATPase domain of DNA mismatch repair MUTS family
CY96_RS21630	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CY96_RS21630	SM00481	DNA polymerase alpha chain like domain
CY96_RS21630	SM00483	DNA polymerase X family
CY96_RS21670	SM00873	B3/4 domain
CY96_RS21670	SM00874	tRNA synthetase B5 domain
CY96_RS21670	SM00896	Ferredoxin-fold anticodon binding domain
CY96_RS21680	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CY96_RS21750	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CY96_RS21765	SM00382	ATPases associated with a variety of cellular activities
CY96_RS21785	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CY96_RS21800	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CY96_RS21800	SM01232	CY96_RS21800
CY96_RS21805	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CY96_RS21805	SM00474	3'-5' exonuclease
CY96_RS21805	SM00475	5'-3' exonuclease
CY96_RS21805	SM00482	DNA polymerase A domain
CY96_RS21810	SM00091	PAS domain
CY96_RS21810	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS21810	SM00387	Histidine kinase-like ATPases
CY96_RS21810	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS21815	SM00448	cheY-homologous receiver domain
CY96_RS21815	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS21830	SM01329	CY96_RS21830
CY96_RS21880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS21885	SM00919	Malic enzyme, NAD binding domain
CY96_RS21885	SM01274	CY96_RS21885
CY96_RS21890	SM00481	DNA polymerase alpha chain like domain
CY96_RS21920	SM00116	Domain in cystathionine beta-synthase and other proteins.
CY96_RS21930	SM00849	Metallo-beta-lactamase superfamily
CY96_RS21975	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CY96_RS21975	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CY96_RS22090	SM00981	CY96_RS22090
CY96_RS22130	SM00363	S4 RNA-binding domain
CY96_RS22130	SM01390	CY96_RS22130
CY96_RS22155	SM00363	S4 RNA-binding domain
CY96_RS22175	SM01266	CY96_RS22175
CY96_RS22190	SM00116	Domain in cystathionine beta-synthase and other proteins.
CY96_RS22210	SM00448	cheY-homologous receiver domain
CY96_RS22210	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS22215	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS22215	SM00387	Histidine kinase-like ATPases
CY96_RS22215	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS22220	SM00248	ankyrin repeats
CY96_RS22245	SM00354	helix_turn _helix lactose operon repressor
CY96_RS22255	SM00830	Chorismate mutase type II
CY96_RS22305	SM00382	ATPases associated with a variety of cellular activities
CY96_RS22305	SM00843	CY96_RS22305
CY96_RS22310	SM00646	CY96_RS22310
CY96_RS22350	SM00849	Metallo-beta-lactamase superfamily
CY96_RS22370	SM00642	Alpha-amylase domain
CY96_RS22385	SM00420	helix_turn_helix, Deoxyribose operon repressor
CY96_RS22390	SM00363	S4 RNA-binding domain
CY96_RS22410	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS22435	SM01058	CarD-like/TRCF domain
CY96_RS22470	SM00852	Probable molybdopterin binding domain
CY96_RS22485	SM00729	Elongator protein 3, MiaB family, Radical SAM
CY96_RS22505	SM00450	Rhodanese Homology Domain
CY96_RS22585	SM00382	ATPases associated with a variety of cellular activities
CY96_RS22605	SM00729	Elongator protein 3, MiaB family, Radical SAM
CY96_RS22655	SM00014	Acid phosphatase homologues
CY96_RS22670	SM00852	Probable molybdopterin binding domain
CY96_RS22730	SM00387	Histidine kinase-like ATPases
CY96_RS22735	SM00387	Histidine kinase-like ATPases
CY96_RS22735	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS22770	SM00382	ATPases associated with a variety of cellular activities
CY96_RS22840	SM00422	helix_turn_helix, mercury resistance
CY96_RS22850	SM01234	CY96_RS22850
CY96_RS22855	SM00947	Carbonic anhydrase
CY96_RS22920	SM00899	CY96_RS22920
CY96_RS22930	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS22930	SM00387	Histidine kinase-like ATPases
CY96_RS22930	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS22935	SM00448	cheY-homologous receiver domain
CY96_RS22935	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS22965	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CY96_RS23015	SM00382	ATPases associated with a variety of cellular activities
CY96_RS23020	SM00342	helix_turn_helix, arabinose operon control protein
CY96_RS23020	SM00871	Bacterial transcription activator, effector binding domain
CY96_RS23030	SM00382	ATPases associated with a variety of cellular activities
CY96_RS23040	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CY96_RS23045	SM00448	cheY-homologous receiver domain
CY96_RS23045	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS23050	SM00387	Histidine kinase-like ATPases
CY96_RS23065	SM00382	ATPases associated with a variety of cellular activities
CY96_RS23085	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CY96_RS23085	SM00866	CY96_RS23085
CY96_RS23115	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS23115	SM00387	Histidine kinase-like ATPases
CY96_RS23115	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS23120	SM00448	cheY-homologous receiver domain
CY96_RS23120	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS23125	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CY96_RS23165	SM00357	Cold shock protein domain
CY96_RS23210	SM00642	Alpha-amylase domain
CY96_RS23380	SM00316	Ribosomal protein S1-like RNA-binding domain
CY96_RS23390	SM00344	helix_turn_helix ASNC type
CY96_RS23425	SM01298	CY96_RS23425
CY96_RS23430	SM00479	CY96_RS23430
CY96_RS23520	SM00871	Bacterial transcription activator, effector binding domain
CY96_RS23570	SM00382	ATPases associated with a variety of cellular activities
CY96_RS23605	SM00860	SMI1 / KNR4 family
CY96_RS23740	SM00422	helix_turn_helix, mercury resistance
CY96_RS23755	SM00855	Phosphoglycerate mutase family
CY96_RS23765	SM00729	Elongator protein 3, MiaB family, Radical SAM
CY96_RS23810	SM00382	ATPases associated with a variety of cellular activities
CY96_RS23825	SM00382	ATPases associated with a variety of cellular activities
CY96_RS23825	SM00930	CY96_RS23825
CY96_RS23840	SM00493	CY96_RS23840
CY96_RS23890	SM00849	Metallo-beta-lactamase superfamily
CY96_RS23935	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS23935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS24010	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS24030	SM00448	cheY-homologous receiver domain
CY96_RS24030	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS24035	SM00387	Histidine kinase-like ATPases
CY96_RS24035	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS24060	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS24060	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS24065	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS24065	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS24085	SM00347	helix_turn_helix multiple antibiotic resistance protein
CY96_RS24185	SM01276	CY96_RS24185
CY96_RS24220	SM00363	S4 RNA-binding domain
CY96_RS24230	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
CY96_RS24235	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS24270	SM00382	ATPases associated with a variety of cellular activities
CY96_RS24305	SM00382	ATPases associated with a variety of cellular activities
CY96_RS24325	SM00448	cheY-homologous receiver domain
CY96_RS24325	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS24340	SM00316	Ribosomal protein S1-like RNA-binding domain
CY96_RS24340	SM00357	Cold shock protein domain
CY96_RS24340	SM00955	CY96_RS24340
CY96_RS24370	SM01192	CY96_RS24370
CY96_RS24370	SM01193	CY96_RS24370
CY96_RS24390	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CY96_RS24420	SM00382	ATPases associated with a variety of cellular activities
CY96_RS24425	SM00387	Histidine kinase-like ATPases
CY96_RS24430	SM00421	helix_turn_helix, Lux Regulon
CY96_RS24430	SM00448	cheY-homologous receiver domain
CY96_RS24520	SM00028	Tetratricopeptide repeats
CY96_RS24560	SM00487	DEAD-like helicases superfamily
CY96_RS24560	SM00490	helicase superfamily c-terminal domain
CY96_RS24575	SM00422	helix_turn_helix, mercury resistance
CY96_RS24585	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS24600	SM00422	helix_turn_helix, mercury resistance
CY96_RS24610	SM00382	ATPases associated with a variety of cellular activities
CY96_RS24620	SM00382	ATPases associated with a variety of cellular activities
CY96_RS24630	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CY96_RS24630	SM00245	tail specific protease
CY96_RS24640	SM00382	ATPases associated with a variety of cellular activities
CY96_RS24655	SM00937	CY96_RS24655
CY96_RS24660	SM00957	SecA DEAD-like domain
CY96_RS24660	SM00958	SecA preprotein cross-linking domain
CY96_RS24670	SM00382	ATPases associated with a variety of cellular activities
CY96_RS24705	SM00357	Cold shock protein domain
CY96_RS24715	SM00487	DEAD-like helicases superfamily
CY96_RS24715	SM00490	helicase superfamily c-terminal domain
CY96_RS24750	SM00984	UDP binding domain
CY96_RS24765	SM00382	ATPases associated with a variety of cellular activities
CY96_RS24770	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
CY96_RS24905	SM00287	Bacterial SH3 domain homologues
CY96_RS24935	SM00287	Bacterial SH3 domain homologues
CY96_RS24965	SM00487	DEAD-like helicases superfamily
CY96_RS24965	SM00490	helicase superfamily c-terminal domain
CY96_RS25010	SM00382	ATPases associated with a variety of cellular activities
CY96_RS25020	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS25045	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS25045	SM00387	Histidine kinase-like ATPases
CY96_RS25045	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS25050	SM00448	cheY-homologous receiver domain
CY96_RS25050	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS25105	SM00984	UDP binding domain
CY96_RS25195	SM00382	ATPases associated with a variety of cellular activities
CY96_RS25200	SM00850	LytTr DNA-binding domain
CY96_RS25290	SM00052	Putative diguanylate phosphodiesterase
CY96_RS25290	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CY96_RS25290	SM00091	PAS domain
CY96_RS25290	SM00267	diguanylate cyclase
CY96_RS25310	SM00382	ATPases associated with a variety of cellular activities
CY96_RS25380	SM00226	Low molecular weight phosphatase family
CY96_RS25395	SM00903	Flavin reductase like domain
CY96_RS25430	SM00937	CY96_RS25430
CY96_RS25445	SM00357	Cold shock protein domain
CY96_RS25445	SM00382	ATPases associated with a variety of cellular activities
CY96_RS25445	SM00959	Rho termination factor, N-terminal domain
CY96_RS25470	SM00448	cheY-homologous receiver domain
CY96_RS25520	SM00155	Phospholipase D. Active site motifs.
CY96_RS25530	SM00052	Putative diguanylate phosphodiesterase
CY96_RS25530	SM00267	diguanylate cyclase
CY96_RS25540	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS25550	SM00421	helix_turn_helix, Lux Regulon
CY96_RS25550	SM00448	cheY-homologous receiver domain
CY96_RS25565	SM00382	ATPases associated with a variety of cellular activities
CY96_RS25605	SM00836	DALR anticodon binding domain
CY96_RS25605	SM01016	Arginyl tRNA synthetase N terminal dom
CY96_RS25645	SM00422	helix_turn_helix, mercury resistance
CY96_RS25675	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CY96_RS25685	SM00382	ATPases associated with a variety of cellular activities
CY96_RS25725	SM00936	Penicillin-binding protein 5, C-terminal domain 
CY96_RS25770	SM00986	Uracil DNA glycosylase superfamily
CY96_RS25770	SM00987	UreE urease accessory protein, C-terminal domain 
CY96_RS25780	SM00382	ATPases associated with a variety of cellular activities
CY96_RS25790	SM00354	helix_turn _helix lactose operon repressor
CY96_RS25825	SM00100	Cyclic nucleotide-monophosphate binding domain
CY96_RS25835	SM00421	helix_turn_helix, Lux Regulon
CY96_RS25835	SM00448	cheY-homologous receiver domain
CY96_RS25840	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CY96_RS25850	SM00267	diguanylate cyclase
CY96_RS25865	SM00448	cheY-homologous receiver domain
CY96_RS25865	SM00850	LytTr DNA-binding domain
CY96_RS25895	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CY96_RS25945	SM00382	ATPases associated with a variety of cellular activities
CY96_RS25980	SM00448	cheY-homologous receiver domain
CY96_RS25980	SM00850	LytTr DNA-binding domain
CY96_RS25985	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CY96_RS25985	SM00387	Histidine kinase-like ATPases
CY96_RS26035	SM00487	DEAD-like helicases superfamily
CY96_RS26035	SM00490	helicase superfamily c-terminal domain
CY96_RS26040	SM01240	CY96_RS26040
CY96_RS26060	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CY96_RS26060	SM00387	Histidine kinase-like ATPases
CY96_RS26060	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS26075	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CY96_RS26080	SM00849	Metallo-beta-lactamase superfamily
CY96_RS26095	SM00091	PAS domain
CY96_RS26095	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS26095	SM00387	Histidine kinase-like ATPases
CY96_RS26095	SM00388	His Kinase A (phosphoacceptor) domain
CY96_RS26100	SM00448	cheY-homologous receiver domain
CY96_RS26100	SM00862	Transcriptional regulatory protein, C terminal
CY96_RS26125	SM00788	Adenylosuccinate synthetase
CY96_RS26140	SM00267	diguanylate cyclase
CY96_RS26185	SM00470	ParB-like nuclease domain
CY96_RS26195	SM00470	ParB-like nuclease domain
CY96_RS26205	SM01228	CY96_RS26205
CY96_RS26215	SM00393	Putative single-stranded nucleic acids-binding domain
CY96_RS26215	SM01245	CY96_RS26215
CY96_RS26235	SM00382	ATPases associated with a variety of cellular activities
CY96_RS26235	SM00760	Bacterial dnaA protein helix-turn-helix domain
CY96_RS26240	SM00480	DNA polymerase III beta subunit
CY96_RS26255	SM00387	Histidine kinase-like ATPases
CY96_RS26255	SM00433	TopoisomeraseII
CY96_RS26260	SM00434	DNA Topoisomerase IV
CY96_RS26285	SM00116	Domain in cystathionine beta-synthase and other proteins.
CY96_RS26285	SM01240	CY96_RS26285
CY96_RS26290	SM00936	Penicillin-binding protein 5, C-terminal domain 
CY96_RS26345	SM00382	ATPases associated with a variety of cellular activities
CY96_RS26355	SM00493	CY96_RS26355
CY96_RS26420	SM00465	GIY-YIG type nucleases (URI domain)
CY96_RS26430	SM00966	SpoVT / AbrB like domain 
CY96_RS26445	SM00493	CY96_RS26445
CY96_RS26450	SM00650	Ribosomal RNA adenine dimethylases
CY96_RS26495	SM01400	CY96_RS26495
CY96_RS26510	SM00487	DEAD-like helicases superfamily
CY96_RS26510	SM00490	helicase superfamily c-terminal domain
CY96_RS26510	SM00982	CY96_RS26510
CY96_RS26510	SM01058	CarD-like/TRCF domain
CY96_RS26515	SM00966	SpoVT / AbrB like domain 
CY96_RS26530	SM00363	S4 RNA-binding domain
CY96_RS26550	SM00316	Ribosomal protein S1-like RNA-binding domain
CY96_RS26565	SM00331	Sigma factor PP2C-like phosphatases
CY96_RS26565	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CY96_RS26570	SM00977	TilS substrate C-terminal domain
CY96_RS26580	SM00382	ATPases associated with a variety of cellular activities
CY96_RS26620	SM00905	Dihydroneopterin aldolase
CY96_RS26630	SM00530	Helix-turn-helix XRE-family like proteins 
CY96_RS26675	SM00382	ATPases associated with a variety of cellular activities
CY96_RS26675	SM01086	C-terminal, D2-small domain, of ClpB protein
CY96_RS26680	SM00382	ATPases associated with a variety of cellular activities
CY96_RS26690	SM00670	Large family of predicted nucleotide-binding domains
CY96_RS26715	SM00840	CY96_RS26715
CY96_RS26720	SM00535	Ribonuclease III family
CY96_RS26725	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CY96_RS26735	SM00421	helix_turn_helix, Lux Regulon
CY96_RS26750	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CY96_RS26755	SM00649	Ribosomal protein L11/L12
CY96_RS26785	SM00663	RNA polymerase I subunit A N-terminus
CY96_RS26805	SM00838	Elongation factor G C-terminus
CY96_RS26805	SM00889	Elongation factor G, domain IV
CY96_RS26815	SM01403	CY96_RS26815
CY96_RS26835	SM01382	CY96_RS26835
CY96_RS26835	SM01383	CY96_RS26835
CY96_RS26850	SM00322	K homology RNA-binding domain
CY96_RS26870	SM01374	CY96_RS26870
CY96_RS26875	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CY96_RS26935	SM00316	Ribosomal protein S1-like RNA-binding domain
CY96_RS26955	SM00662	RNA polymerases D
CY96_RS26965	SM00382	ATPases associated with a variety of cellular activities
CY96_RS26970	SM00382	ATPases associated with a variety of cellular activities
CY96_RS27000	SM00646	CY96_RS27000
CY96_RS27015	SM01251	CY96_RS27015
CY96_RS27775	SM00532	Ligase N family
CY96_RS28195	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CY96_RS28235	SM00636	CY96_RS28235
CY96_RS28810	SM00091	PAS domain
CY96_RS28815	SM00448	cheY-homologous receiver domain
