locus-tag	class	description
JM956_RS00010	COG0592	DNA-directed DNA polymerase activity
JM956_RS00015	COG2501	S4 domain
JM956_RS00025	COG0187	DNA topoisomerase II activity
JM956_RS00030	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JM956_RS00065	COG0516	GMP reductase activity
JM956_RS00065	COG0517	IMP dehydrogenase activity
JM956_RS00070	COG1686	Belongs to the peptidase S11 family
JM956_RS00100	COG1428	Deoxynucleoside kinase
JM956_RS00105	COG1428	Deoxynucleoside kinase
JM956_RS00110	COG1335	isochorismatase
JM956_RS00115	COG0590	tRNA wobble adenosine to inosine editing
JM956_RS00125	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JM956_RS00180	COG1982	Orn Lys Arg decarboxylase major
JM956_RS00190	COG0470	DNA polymerase III
JM956_RS00195	COG1774	PSP1 C-terminal conserved region
JM956_RS00205	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JM956_RS00215	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JM956_RS00220	COG2002	toxin-antitoxin pair type II binding
JM956_RS00230	COG0084	hydrolase, TatD family'
JM956_RS00250	COG4466	Protein conserved in bacteria
JM956_RS00265	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JM956_RS00270	COG0251	oxidation-reduction process
JM956_RS00300	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JM956_RS00305	COG2002	toxin-antitoxin pair type II binding
JM956_RS00310	COG2244	polysaccharide biosynthetic process
JM956_RS00315	COG3956	TIGRFAM MazG family protein
JM956_RS00320	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JM956_RS00340	COG1098	S1 RNA binding domain
JM956_RS00355	COG2208	phosphoserine phosphatase activity
JM956_RS00365	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JM956_RS00370	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JM956_RS00385	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JM956_RS00390	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JM956_RS00395	COG0512	Glutamine amidotransferase of anthranilate synthase
JM956_RS00400	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JM956_RS00405	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JM956_RS00410	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JM956_RS00415	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JM956_RS00420	COG1396	sequence-specific DNA binding
JM956_RS00425	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JM956_RS00465	COG0544	peptidyl-prolyl cis-trans isomerase activity
JM956_RS00515	COG3880	PFAM UvrB UvrC protein
JM956_RS00525	COG0542	response to heat
JM956_RS00530	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JM956_RS00540	COG4956	integral membrane protein (PIN domain superfamily)
JM956_RS00560	COG1045	serine acetyltransferase
JM956_RS00575	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JM956_RS00580	COG3688	RNA-binding protein containing a PIN domain
JM956_RS00595	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JM956_RS00600	COG0250	Participates in transcription elongation, termination and antitermination
JM956_RS00605	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JM956_RS00625	COG2813	Specifically methylates the guanine in position
JM956_RS00640	COG1358	cellular component organization or biogenesis
JM956_RS00645	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JM956_RS00710	COG0255	Belongs to the universal ribosomal protein uL29 family
JM956_RS00770	COG0201	protein transport
JM956_RS00780	COG0024	Methionine aminopeptidase
JM956_RS00790	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JM956_RS00825	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JM956_RS00850	COG0860	N-Acetylmuramoyl-L-alanine amidase
JM956_RS00855	COG0489	protein tyrosine kinase activity
JM956_RS00865	COG2194	sulfuric ester hydrolase activity
JM956_RS00870	COG0726	polysaccharide deacetylase
JM956_RS00950	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
JM956_RS00955	COG4856	YbbR-like protein
JM956_RS00995	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS01000	COG2011	ABC-type metal ion transport system permease component
JM956_RS01005	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JM956_RS01010	COG1464	Belongs to the NlpA lipoprotein family
JM956_RS01015	COG0604	alcohol dehydrogenase
JM956_RS01025	COG0277	FAD linked oxidase domain protein
JM956_RS01030	COG2271	Major facilitator Superfamily
JM956_RS01040	COG2814	Major facilitator Superfamily
JM956_RS01055	COG2207	Transcriptional regulator
JM956_RS01070	COG4166	transmembrane transport
JM956_RS01075	COG4166	transmembrane transport
JM956_RS01080	COG0656	L-ascorbic acid biosynthetic process
JM956_RS01100	COG4149	molybdate abc transporter
JM956_RS01105	COG0725	ABC transporter, periplasmic molybdate-binding protein
JM956_RS01110	COG1910	domain protein
JM956_RS01125	COG0697	spore germination
JM956_RS01140	COG0204	Acyl-transferase
JM956_RS01150	COG1609	Transcriptional regulator
JM956_RS01160	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM956_RS01175	COG5298	Protein conserved in bacteria
JM956_RS01195	COG0488	(ABC) transporter
JM956_RS01210	COG0747	negative chemotaxis
JM956_RS01215	COG0601	transmembrane transport
JM956_RS01220	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JM956_RS01225	COG0444	Belongs to the ABC transporter superfamily
JM956_RS01230	COG4608	Belongs to the ABC transporter superfamily
JM956_RS01235	COG0561	phosphatase activity
JM956_RS01265	COG3185	4-Hydroxyphenylpyruvate dioxygenase
JM956_RS01270	COG0179	Fumarylacetoacetate (FAA) hydrolase
JM956_RS01280	COG0531	amino acid
JM956_RS01285	COG2814	Major facilitator Superfamily
JM956_RS01295	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JM956_RS01305	COG4294	response to UV
JM956_RS01310	COG0705	Rhomboid family
JM956_RS01320	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JM956_RS01325	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JM956_RS01330	COG0864	Transcriptional regulator
JM956_RS01335	COG2337	Toxic component of a toxin-antitoxin (TA) module
JM956_RS01340	COG2183	response to ionizing radiation
JM956_RS01440	COG0802	atpase or kinase
JM956_RS01445	COG1214	PFAM Peptidase M22, glycoprotease
JM956_RS01450	COG0456	acetyltransferase
JM956_RS01460	COG0488	(ABC) transporter
JM956_RS01475	COG1266	CAAX protease self-immunity
JM956_RS01495	COG2252	PERMEase
JM956_RS01505	COG5002	protein histidine kinase activity
JM956_RS01530	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JM956_RS01560	COG2226	methyltransferase
JM956_RS01580	COG1215	transferase activity, transferring glycosyl groups
JM956_RS01620	COG2205	protein histidine kinase activity
JM956_RS01625	COG0745	RESPONSE REGULATOR receiver
JM956_RS01645	COG0697	spore germination
JM956_RS01670	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JM956_RS01675	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JM956_RS01680	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JM956_RS01690	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JM956_RS01705	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JM956_RS01715	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JM956_RS01725	COG0151	Belongs to the GarS family
JM956_RS01750	COG0210	DNA helicase
JM956_RS01760	COG4851	CamS sex pheromone cAM373 precursor
JM956_RS01775	COG1335	isochorismatase
JM956_RS01785	COG2011	ABC-type metal ion transport system permease component
JM956_RS01790	COG1464	Belongs to the NlpA lipoprotein family
JM956_RS01805	COG0003	Pfam Anion-transporting ATPase
JM956_RS01810	COG1846	Transcriptional regulator
JM956_RS01815	COG4682	membrane
JM956_RS01835	COG1597	lipid kinase activity
JM956_RS01845	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JM956_RS01855	COG1012	belongs to the aldehyde dehydrogenase family
JM956_RS01860	COG2076	Multidrug Resistance protein
JM956_RS01870	COG2309	aminopeptidase activity
JM956_RS01890	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM956_RS01900	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JM956_RS01905	COG4807	Protein conserved in bacteria
JM956_RS01930	COG1757	Na H antiporter
JM956_RS01935	COG1473	amidohydrolase
JM956_RS01950	COG0450	alkyl hydroperoxide reductase
JM956_RS01960	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
JM956_RS01970	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM956_RS01975	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM956_RS01980	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM956_RS01985	COG0492	ferredoxin-NADP+ reductase activity
JM956_RS01995	COG0166	Belongs to the GPI family
JM956_RS02020	COG5002	protein histidine kinase activity
JM956_RS02040	COG3541	Predicted nucleotidyltransferase
JM956_RS02045	COG2814	Major facilitator Superfamily
JM956_RS02050	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JM956_RS02050	COG0723	plastoquinol--plastocyanin reductase activity
JM956_RS02060	COG0765	amino acid transport
JM956_RS02065	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JM956_RS02075	COG0840	transmembrane signaling receptor activity
JM956_RS02100	COG0549	Belongs to the carbamate kinase family
JM956_RS02105	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JM956_RS02115	COG0366	Alpha amylase catalytic
JM956_RS02120	COG1263	PTS System
JM956_RS02120	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM956_RS02120	COG2190	(PTS) system
JM956_RS02150	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JM956_RS02170	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JM956_RS02175	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JM956_RS02180	COG1116	anion transmembrane transporter activity
JM956_RS02230	COG2270	Major facilitator Superfamily
JM956_RS02260	COG2310	stress, protein
JM956_RS02265	COG2310	stress, protein
JM956_RS02270	COG2310	stress, protein
JM956_RS02275	COG0861	Integral membrane protein TerC family
JM956_RS02285	COG3853	Toxic anion resistance protein (TelA)
JM956_RS02300	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JM956_RS02310	COG1295	ribonuclease BN
JM956_RS02315	COG2217	Heavy metal translocating P-type atpase
JM956_RS02320	COG0697	spore germination
JM956_RS02340	COG0586	Pfam SNARE associated Golgi protein
JM956_RS02355	COG3871	stress protein (general stress protein 26)
JM956_RS02360	COG0387	Pfam Sodium calcium exchanger
JM956_RS02370	COG0535	radical SAM domain protein
JM956_RS02390	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JM956_RS02410	COG3829	transcription factor binding
JM956_RS02420	COG0833	amino acid
JM956_RS02455	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM956_RS02455	COG1263	PTS System
JM956_RS02460	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM956_RS02475	COG0463	Glycosyl transferase, family 2
JM956_RS02485	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JM956_RS02485	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JM956_RS02500	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JM956_RS02520	COG1228	amidohydrolase
JM956_RS02525	COG1090	epimerase
JM956_RS02555	COG1988	membrane-bound metal-dependent
JM956_RS02560	COG1194	a g-specific adenine glycosylase
JM956_RS02585	COG1132	(ABC) transporter
JM956_RS02590	COG4129	membrane
JM956_RS02595	COG0070	glutamate synthase
JM956_RS02595	COG0067	glutamate synthase
JM956_RS02595	COG0069	glutamate synthase activity
JM956_RS02605	COG4555	ABC transporter
JM956_RS02625	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JM956_RS02630	COG0735	belongs to the Fur family
JM956_RS02750	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JM956_RS02775	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JM956_RS02780	COG1716	ATPase activity
JM956_RS02780	COG5001	Diguanylate cyclase
JM956_RS02785	COG2766	serine protein kinase
JM956_RS02805	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JM956_RS02815	COG1585	Membrane protein implicated in regulation of membrane protease activity
JM956_RS02820	COG2268	Band 7 protein
JM956_RS02830	COG3290	protein histidine kinase activity
JM956_RS02835	COG4565	transcriptional regulatory protein
JM956_RS02840	COG2851	Citrate transporter
JM956_RS02865	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JM956_RS02870	COG3842	ATPase activity
JM956_RS02875	COG1175	transmembrane transport
JM956_RS02880	COG0395	ABC-type sugar transport system, permease component
JM956_RS02895	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JM956_RS02900	COG0745	RESPONSE REGULATOR receiver
JM956_RS02905	COG5002	protein histidine kinase activity
JM956_RS02915	COG4990	cell redox homeostasis
JM956_RS02925	COG3290	protein histidine kinase activity
JM956_RS02930	COG4565	transcriptional regulatory protein
JM956_RS02935	COG3493	citrate carrier protein
JM956_RS02940	COG0281	malic enzyme
JM956_RS02950	COG0697	spore germination
JM956_RS02955	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM956_RS02965	COG5002	protein histidine kinase activity
JM956_RS02980	COG0456	acetyltransferase
JM956_RS02980	COG0454	-acetyltransferase
JM956_RS02985	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JM956_RS02990	COG3383	formate dehydrogenase (NAD+) activity
JM956_RS02995	COG2427	Protein of unknown function (DUF1641)
JM956_RS03010	COG0531	amino acid
JM956_RS03015	COG0640	Transcriptional regulator
JM956_RS03020	COG2217	Heavy metal translocating P-type atpase
JM956_RS03025	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JM956_RS03040	COG3227	Zinc metalloprotease (Elastase)
JM956_RS03060	COG2720	vancomycin resistance protein
JM956_RS03065	COG1316	TRANSCRIPTIONal
JM956_RS03070	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM956_RS03075	COG0346	lactoylglutathione lyase activity
JM956_RS03080	COG1253	flavin adenine dinucleotide binding
JM956_RS03085	COG1027	Aspartate ammonia-lyase
JM956_RS03090	COG1620	l-lactate permease
JM956_RS03105	COG3104	oligopeptide transport
JM956_RS03110	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM956_RS03115	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM956_RS03120	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM956_RS03135	COG0156	8-amino-7-oxononanoate synthase activity
JM956_RS03140	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JM956_RS03150	COG4548	von Willebrand factor, type A
JM956_RS03155	COG0714	Associated with various cellular activities
JM956_RS03175	COG0531	amino acid
JM956_RS03180	COG2188	Transcriptional regulator
JM956_RS03185	COG1263	PTS System
JM956_RS03185	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM956_RS03190	COG0366	Alpha amylase catalytic
JM956_RS03205	COG0697	spore germination
JM956_RS03210	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JM956_RS03215	COG1115	amino acid carrier protein
JM956_RS03220	COG1126	abc transporter atp-binding protein
JM956_RS03225	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JM956_RS03230	COG0765	amino acid transport
JM956_RS03235	COG0765	amino acid transport
JM956_RS03240	COG0833	amino acid
JM956_RS03255	COG1595	DNA-templated transcription, initiation
JM956_RS03265	COG2378	regulation of single-species biofilm formation
JM956_RS03270	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JM956_RS03275	COG5002	protein histidine kinase activity
JM956_RS03290	COG0659	secondary active sulfate transmembrane transporter activity
JM956_RS03305	COG2271	Major facilitator Superfamily
JM956_RS03310	COG1846	Transcriptional regulator
JM956_RS03315	COG0477	Major facilitator Superfamily
JM956_RS03320	COG1609	Transcriptional regulator
JM956_RS03325	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JM956_RS03340	COG1172	Belongs to the binding-protein-dependent transport system permease family
JM956_RS03345	COG1879	ABC-type sugar transport system periplasmic component
JM956_RS03370	COG1063	alcohol dehydrogenase
JM956_RS03420	COG0840	transmembrane signaling receptor activity
JM956_RS03425	COG3583	domain protein
JM956_RS03425	COG3584	3D domain protein
JM956_RS03430	COG1476	TRANSCRIPTIONal
JM956_RS03450	COG3104	oligopeptide transport
JM956_RS03455	COG1114	Component of the transport system for branched-chain amino acids
JM956_RS03470	COG1113	amino acid transport
JM956_RS03475	COG2252	PERMEase
JM956_RS03490	COG2153	protein acetylation
JM956_RS03500	COG0475	glutathione-regulated potassium exporter activity
JM956_RS03500	COG0569	domain protein
JM956_RS03515	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JM956_RS03520	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JM956_RS03525	COG0833	amino acid
JM956_RS03530	COG4990	cell redox homeostasis
JM956_RS03545	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JM956_RS03550	COG0697	spore germination
JM956_RS03555	COG0531	amino acid
JM956_RS03565	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JM956_RS03570	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JM956_RS03575	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JM956_RS03575	COG1918	ferrous iron import across plasma membrane
JM956_RS03580	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JM956_RS03585	COG0573	inorganic phosphate transmembrane transporter activity
JM956_RS03590	COG0581	inorganic phosphate transmembrane transporter activity
JM956_RS03600	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JM956_RS03720	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
JM956_RS03740	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JM956_RS03745	COG1116	anion transmembrane transporter activity
JM956_RS03750	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JM956_RS03755	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JM956_RS03760	COG0352	thiamine-phosphate diphosphorylase activity
JM956_RS03765	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JM956_RS03770	COG2104	thiamine diphosphate biosynthetic process
JM956_RS03780	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JM956_RS03785	COG0351	phosphomethylpyrimidine kinase
JM956_RS03805	COG1136	(ABC) transporter
JM956_RS03850	COG2205	protein histidine kinase activity
JM956_RS03855	COG2814	Major facilitator Superfamily
JM956_RS03860	COG1846	Transcriptional regulator
JM956_RS03875	COG2252	PERMEase
JM956_RS03880	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS03895	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JM956_RS03900	COG1621	beta-fructofuranosidase activity
JM956_RS03905	COG1263	PTS System
JM956_RS03905	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM956_RS03910	COG1609	Transcriptional regulator
JM956_RS03960	COG0778	Nitroreductase
JM956_RS03965	COG2719	SpoVR family
JM956_RS03980	COG1937	Protein conserved in bacteria
JM956_RS03985	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM956_RS03985	COG0425	Belongs to the sulfur carrier protein TusA family
JM956_RS03990	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM956_RS03990	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM956_RS03995	COG0425	Belongs to the sulfur carrier protein TusA family
JM956_RS04000	COG0425	Belongs to the sulfur carrier protein TusA family
JM956_RS04000	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM956_RS04005	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM956_RS04010	COG2210	Belongs to the sulfur carrier protein TusA family
JM956_RS04015	COG0730	response to heat
JM956_RS04025	COG1316	TRANSCRIPTIONal
JM956_RS04030	COG0604	alcohol dehydrogenase
JM956_RS04035	COG1283	sodium-dependent phosphate transmembrane transporter activity
JM956_RS04050	COG3711	transcriptional antiterminator
JM956_RS04050	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JM956_RS04055	COG1447	Phosphotransferase system cellobiose-specific component IIA
JM956_RS04060	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JM956_RS04085	COG1388	LysM domain
JM956_RS04085	COG3584	3D domain protein
JM956_RS04090	COG0577	efflux transmembrane transporter activity
JM956_RS04095	COG1136	(ABC) transporter
JM956_RS04105	COG5522	Integral membrane protein (intg_mem_TP0381)
JM956_RS04120	COG1114	Component of the transport system for branched-chain amino acids
JM956_RS04125	COG3546	catalase activity
JM956_RS04160	COG0586	Pfam SNARE associated Golgi protein
JM956_RS04195	COG0531	amino acid
JM956_RS04200	COG0475	glutathione-regulated potassium exporter activity
JM956_RS04210	COG1737	Transcriptional regulator
JM956_RS04220	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM956_RS04220	COG1263	PTS System
JM956_RS04230	COG2259	Doxx family
JM956_RS04250	COG1522	sequence-specific DNA binding
JM956_RS04270	COG1309	transcriptional regulator
JM956_RS04275	COG2814	Major facilitator Superfamily
JM956_RS04280	COG4533	DNA binding
JM956_RS04285	COG2814	Major facilitator Superfamily
JM956_RS04295	COG0693	protein deglycase activity
JM956_RS04300	COG0753	catalase activity
JM956_RS04310	COG0531	amino acid
JM956_RS04325	COG1012	belongs to the aldehyde dehydrogenase family
JM956_RS04330	COG1132	(ABC) transporter
JM956_RS04335	COG1132	(ABC) transporter
JM956_RS04340	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JM956_RS04345	COG0765	amino acid transport
JM956_RS04350	COG1126	abc transporter atp-binding protein
JM956_RS04365	COG0189	ligase activity
JM956_RS04395	COG0028	Belongs to the TPP enzyme family
JM956_RS04400	COG3527	Alpha-acetolactate decarboxylase
JM956_RS04410	COG0561	phosphatase activity
JM956_RS04420	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM956_RS04420	COG3409	Peptidoglycan-binding domain 1 protein
JM956_RS04425	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JM956_RS04430	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS04445	COG0659	secondary active sulfate transmembrane transporter activity
JM956_RS04450	COG2244	polysaccharide biosynthetic process
JM956_RS04470	COG1024	Enoyl-CoA hydratase
JM956_RS04490	COG1363	Peptidase, m42
JM956_RS04680	COG0601	transmembrane transport
JM956_RS04685	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JM956_RS04690	COG0444	Belongs to the ABC transporter superfamily
JM956_RS04695	COG4608	Belongs to the ABC transporter superfamily
JM956_RS04710	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM956_RS04790	COG0477	Major facilitator Superfamily
JM956_RS04795	COG3290	protein histidine kinase activity
JM956_RS04800	COG4565	transcriptional regulatory protein
JM956_RS04805	COG3181	Tripartite tricarboxylate transporter family receptor
JM956_RS04865	COG0789	Transcriptional regulator
JM956_RS04865	COG4978	Transcriptional regulator
JM956_RS04885	COG0305	Participates in initiation and elongation during chromosome replication
JM956_RS04915	COG0477	Major facilitator Superfamily
JM956_RS05045	COG3320	Male sterility
JM956_RS05045	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JM956_RS05050	COG1309	transcriptional regulator
JM956_RS05065	COG1183	phosphatidylcholine synthase activity
JM956_RS05080	COG2376	Dihydroxyacetone kinase
JM956_RS05090	COG2376	Dihydroxyacetone kinase
JM956_RS05125	COG1388	LysM domain
JM956_RS05125	COG3584	3D domain protein
JM956_RS05130	COG0791	NLP P60 protein
JM956_RS05130	COG1388	LysM domain
JM956_RS05135	COG2373	Large extracellular alpha-helical protein
JM956_RS05160	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JM956_RS05255	COG1191	sigma factor activity
JM956_RS05265	COG2208	phosphoserine phosphatase activity
JM956_RS05270	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JM956_RS05275	COG5002	protein histidine kinase activity
JM956_RS05275	COG0784	Response regulator, receiver
JM956_RS05275	COG2205	protein histidine kinase activity
JM956_RS05325	COG4585	Histidine kinase
JM956_RS05330	COG2197	response regulator
JM956_RS05355	COG0420	3'-5' exonuclease activity
JM956_RS05360	COG4717	serine-type aminopeptidase activity
JM956_RS05375	COG0346	lactoylglutathione lyase activity
JM956_RS05380	COG0346	lactoylglutathione lyase activity
JM956_RS05385	COG0457	Tetratricopeptide repeat
JM956_RS05395	COG2267	carboxylic ester hydrolase activity
JM956_RS05415	COG2140	Oxalate decarboxylase
JM956_RS05420	COG3620	sequence-specific DNA binding
JM956_RS05425	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JM956_RS05430	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JM956_RS05440	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JM956_RS05450	COG1595	DNA-templated transcription, initiation
JM956_RS05465	COG3973	AAA domain
JM956_RS05495	COG4980	gas vesicle protein
JM956_RS05500	COG0537	adenosine 5'-monophosphoramidase activity
JM956_RS05505	COG1131	(ABC) transporter
JM956_RS05510	COG4473	ABC transporter
JM956_RS05525	COG1309	transcriptional regulator
JM956_RS05535	COG3402	PFAM membrane-flanked domain
JM956_RS05540	COG3428	Bacterial PH domain
JM956_RS05575	COG0697	spore germination
JM956_RS05580	COG3402	PFAM membrane-flanked domain
JM956_RS05585	COG3428	Bacterial PH domain
JM956_RS05590	COG2329	Antibiotic biosynthesis monooxygenase
JM956_RS05595	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JM956_RS05610	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JM956_RS05645	COG1309	transcriptional regulator
JM956_RS05650	COG1511	domain protein
JM956_RS05650	COG1511	domain protein
JM956_RS05670	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS05675	COG1609	Transcriptional regulator
JM956_RS05685	COG1234	tRNA 3'-trailer cleavage
JM956_RS05690	COG0095	Lipoate-protein ligase
JM956_RS05700	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS05710	COG3209	COG3209 Rhs family protein
JM956_RS05815	COG1408	metallophosphoesterase
JM956_RS05820	COG1078	dGTPase activity
JM956_RS05830	COG1595	DNA-templated transcription, initiation
JM956_RS05835	COG3708	Transcriptional regulator
JM956_RS05835	COG2207	Transcriptional regulator
JM956_RS05845	COG2205	protein histidine kinase activity
JM956_RS05850	COG0745	RESPONSE REGULATOR receiver
JM956_RS05870	COG0501	Belongs to the peptidase M48B family
JM956_RS05875	COG0840	transmembrane signaling receptor activity
JM956_RS05880	COG3693	PFAM glycoside hydrolase, family 10
JM956_RS05890	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JM956_RS05895	COG2224	Isocitrate lyase
JM956_RS05910	COG1278	Cold shock
JM956_RS05935	COG0398	Pfam SNARE associated Golgi protein
JM956_RS05955	COG0202	RNA polymerase activity
JM956_RS05995	COG0179	Fumarylacetoacetate (FAA) hydrolase
JM956_RS06020	COG0367	asparagine synthase
JM956_RS06030	COG0753	catalase activity
JM956_RS06035	COG0004	ammonium transporteR
JM956_RS06055	COG2996	Protein conserved in bacteria
JM956_RS06070	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM956_RS06085	COG0561	phosphatase activity
JM956_RS06105	COG2267	carboxylic ester hydrolase activity
JM956_RS06125	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JM956_RS06130	COG5504	Zn-dependent protease
JM956_RS06140	COG0180	Tryptophanyl-tRNA synthetase
JM956_RS06150	COG4166	transmembrane transport
JM956_RS06155	COG0601	transmembrane transport
JM956_RS06160	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JM956_RS06165	COG0444	Belongs to the ABC transporter superfamily
JM956_RS06170	COG4608	Belongs to the ABC transporter superfamily
JM956_RS06175	COG0534	Mate efflux family protein
JM956_RS06180	COG4166	transmembrane transport
JM956_RS06195	COG0861	Integral membrane protein TerC family
JM956_RS06205	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JM956_RS06215	COG1164	Oligoendopeptidase f
JM956_RS06230	COG2346	COG2346, Truncated hemoglobins
JM956_RS06235	COG4116	CYTH
JM956_RS06245	COG2357	RelA SpoT domain protein
JM956_RS06255	COG0564	pseudouridine synthase activity
JM956_RS06270	COG0772	Belongs to the SEDS family
JM956_RS06275	COG1216	Glycosyl transferase, family 2
JM956_RS06295	COG0463	Glycosyl transferase, family 2
JM956_RS06295	COG0457	Tetratricopeptide repeat
JM956_RS06315	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JM956_RS06330	COG1091	dTDP-4-dehydrorhamnose reductase activity
JM956_RS06375	COG2153	protein acetylation
JM956_RS06385	COG2382	esterase
JM956_RS06405	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JM956_RS06415	COG0512	Glutamine amidotransferase of anthranilate synthase
JM956_RS06415	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JM956_RS06450	COG1620	l-lactate permease
JM956_RS06455	COG5634	Uncharacterized conserved protein (DUF2278)
JM956_RS06505	COG0508	dehydrogenase complex catalyzes the overall conversion of
JM956_RS06550	COG1686	Belongs to the peptidase S11 family
JM956_RS06555	COG0681	Belongs to the peptidase S26 family
JM956_RS06590	COG1012	belongs to the aldehyde dehydrogenase family
JM956_RS06600	COG1176	ABC-type spermidine putrescine transport system, permease component I
JM956_RS06605	COG1177	transmembrane transport
JM956_RS06620	COG2409	Drug exporters of the RND superfamily
JM956_RS06630	COG0564	pseudouridine synthase activity
JM956_RS06645	COG2340	Cysteine-rich secretory protein family
JM956_RS06650	COG0247	lactate metabolic process
JM956_RS06655	COG0277	FAD linked oxidase domain protein
JM956_RS06660	COG3835	regulator
JM956_RS06670	COG0745	RESPONSE REGULATOR receiver
JM956_RS06675	COG5002	protein histidine kinase activity
JM956_RS06680	COG2186	Transcriptional regulator
JM956_RS06700	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JM956_RS06710	COG2116	formate transmembrane transporter activity
JM956_RS06715	COG0861	Integral membrane protein TerC family
JM956_RS06720	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JM956_RS06730	COG2030	dehydratase
JM956_RS06750	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS06755	COG3243	poly(R)-hydroxyalkanoic acid synthase
JM956_RS06765	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JM956_RS06780	COG1840	ABC-type Fe3 transport system, periplasmic component
JM956_RS06785	COG3842	ATPase activity
JM956_RS06810	COG1349	DNA-binding transcription factor activity
JM956_RS06820	COG0235	Class ii aldolase
JM956_RS06830	COG2861	carbohydrate metabolic process
JM956_RS06840	COG3852	Histidine kinase
JM956_RS06845	COG1846	Transcriptional regulator
JM956_RS06855	COG2318	DinB family
JM956_RS06860	COG5002	protein histidine kinase activity
JM956_RS06870	COG0720	synthase
JM956_RS06885	COG4873	Protein conserved in bacteria
JM956_RS06915	COG1780	Probably involved in ribonucleotide reductase function
JM956_RS06920	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JM956_RS06925	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JM956_RS06930	COG1725	Transcriptional regulator
JM956_RS06935	COG1131	(ABC) transporter
JM956_RS06945	COG1131	(ABC) transporter
JM956_RS06950	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JM956_RS06965	COG1522	sequence-specific DNA binding
JM956_RS06975	COG1335	isochorismatase
JM956_RS06985	COG1619	proteins homologs of microcin C7 resistance protein MccF
JM956_RS06990	COG2070	2-Nitropropane dioxygenase
JM956_RS06995	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JM956_RS07005	COG1696	Membrane protein involved in D-alanine export
JM956_RS07030	COG0716	FMN binding
JM956_RS07090	COG1846	Transcriptional regulator
JM956_RS07100	COG1301	dicarboxylic acid transport
JM956_RS07105	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JM956_RS07110	COG4709	membrane
JM956_RS07115	COG3874	Sporulation protein YtfJ
JM956_RS07135	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JM956_RS07140	COG0028	Belongs to the TPP enzyme family
JM956_RS07145	COG0440	acetolactate synthase activity
JM956_RS07220	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JM956_RS07235	COG1183	phosphatidylcholine synthase activity
JM956_RS07240	COG1368	sulfuric ester hydrolase activity
JM956_RS07250	COG0019	diaminopimelate decarboxylase activity
JM956_RS07270	COG0529	Catalyzes the synthesis of activated sulfate
JM956_RS07275	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JM956_RS07295	COG1648	precorrin-2 dehydrogenase activity
JM956_RS07300	COG0733	neurotransmitter:sodium symporter activity
JM956_RS07325	COG1757	Na H antiporter
JM956_RS07340	COG4758	membrane
JM956_RS07345	COG4585	Histidine kinase
JM956_RS07350	COG2197	response regulator
JM956_RS07360	COG1114	Component of the transport system for branched-chain amino acids
JM956_RS07370	COG2226	methyltransferase
JM956_RS07410	COG0730	response to heat
JM956_RS07415	COG0306	phosphate transporter
JM956_RS07420	COG1392	Phosphate transport regulator
JM956_RS07425	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JM956_RS07440	COG3852	Histidine kinase
JM956_RS07445	COG1801	Protein of unknown function DUF72
JM956_RS07455	COG0582	viral genome integration into host DNA
JM956_RS07460	COG5002	protein histidine kinase activity
JM956_RS07475	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JM956_RS07475	COG0392	lysyltransferase activity
JM956_RS07490	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JM956_RS07495	COG1686	Belongs to the peptidase S11 family
JM956_RS07500	COG2715	membrane protein required for spore maturation
JM956_RS07505	COG0700	Nucleoside recognition
JM956_RS07510	COG1187	pseudouridine synthase activity
JM956_RS07520	COG1333	cytochrome c biogenesis protein
JM956_RS07525	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JM956_RS07530	COG0745	RESPONSE REGULATOR receiver
JM956_RS07535	COG5002	protein histidine kinase activity
JM956_RS07540	COG2096	Adenosyltransferase
JM956_RS07555	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JM956_RS07560	COG1141	Ferredoxin
JM956_RS07570	COG0514	ATP-dependent DNA helicase (RecQ)
JM956_RS07575	COG1266	CAAX protease self-immunity
JM956_RS07585	COG1408	metallophosphoesterase
JM956_RS07590	COG0789	Transcriptional regulator
JM956_RS07600	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JM956_RS07620	COG0492	ferredoxin-NADP+ reductase activity
JM956_RS07625	COG0252	asparaginase activity
JM956_RS07695	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JM956_RS07710	COG0142	geranyltranstransferase activity
JM956_RS07720	COG0142	geranyltranstransferase activity
JM956_RS07745	COG0457	Tetratricopeptide repeat
JM956_RS07765	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JM956_RS07770	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JM956_RS07770	COG2010	Cytochrome c
JM956_RS07775	COG4347	Protein of unknown function (DUF1405)
JM956_RS07790	COG2738	Putative neutral zinc metallopeptidase
JM956_RS07800	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM956_RS07805	COG1694	Mazg nucleotide pyrophosphohydrolase
JM956_RS07825	COG0438	transferase activity, transferring glycosyl groups
JM956_RS07855	COG1199	ATP-dependent helicase activity
JM956_RS07855	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JM956_RS07875	COG3935	DnaD domain protein
JM956_RS07880	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JM956_RS07890	COG4499	WXG100 protein secretion system (Wss), protein YukC
JM956_RS07890	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JM956_RS07945	COG0116	Belongs to the methyltransferase superfamily
JM956_RS07955	COG1199	ATP-dependent helicase activity
JM956_RS07960	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JM956_RS07970	COG3173	Aminoglycoside phosphotransferase
JM956_RS07975	COG0024	Methionine aminopeptidase
JM956_RS07985	COG2233	PERMEase
JM956_RS07990	COG2311	Membrane
JM956_RS07995	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JM956_RS08005	COG0456	acetyltransferase
JM956_RS08015	COG2897	thiosulfate sulfurtransferase activity
JM956_RS08040	COG0754	glutathionylspermidine amidase activity
JM956_RS08055	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JM956_RS08070	COG3944	biosynthesis protein
JM956_RS08080	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JM956_RS08095	COG1215	transferase activity, transferring glycosyl groups
JM956_RS08100	COG0438	transferase activity, transferring glycosyl groups
JM956_RS08135	COG0328	RNA-DNA hybrid ribonuclease activity
JM956_RS08170	COG3403	YqcI/YcgG family
JM956_RS08175	COG1280	lysine exporter protein (LysE YggA)
JM956_RS08190	COG3162	membrane
JM956_RS08195	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JM956_RS08200	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JM956_RS08210	COG0475	glutathione-regulated potassium exporter activity
JM956_RS08215	COG4978	Transcriptional regulator
JM956_RS08215	COG0789	Transcriptional regulator
JM956_RS08225	COG2323	membrane
JM956_RS08230	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JM956_RS08260	COG1923	regulation of RNA biosynthetic process
JM956_RS08270	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JM956_RS08275	COG1360	Flagellar Motor Protein
JM956_RS08280	COG2201	protein-glutamate methylesterase activity
JM956_RS08285	COG2198	Histidine kinase
JM956_RS08285	COG0643	Histidine kinase
JM956_RS08290	COG1776	CheC inhibitor of MCP methylation
JM956_RS08290	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JM956_RS08305	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JM956_RS08325	COG1256	bacterial-type flagellum assembly
JM956_RS08330	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JM956_RS08335	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
JM956_RS08350	COG1815	bacterial-type flagellum-dependent cell motility
JM956_RS08355	COG1558	bacterial-type flagellum-dependent cell motility
JM956_RS08365	COG1766	The M ring may be actively involved in energy transduction
JM956_RS08370	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JM956_RS08380	COG1157	protein secretion by the type III secretion system
JM956_RS08400	COG1749	Flagellar hook protein flgE
JM956_RS08415	COG0784	Response regulator, receiver
JM956_RS08415	COG0835	chemotaxis
JM956_RS08425	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JM956_RS08430	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JM956_RS08435	COG0741	lytic transglycosylase activity
JM956_RS08445	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JM956_RS08450	COG1776	CheC inhibitor of MCP methylation
JM956_RS08450	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JM956_RS08460	COG1338	Plays a role in the flagellum-specific transport system
JM956_RS08465	COG1987	bacterial-type flagellum assembly
JM956_RS08475	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JM956_RS08480	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JM956_RS08485	COG1419	protein localization to endoplasmic reticulum
JM956_RS08490	COG4786	Flagellar basal body rod
JM956_RS08495	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JM956_RS08530	COG2329	Antibiotic biosynthesis monooxygenase
JM956_RS08535	COG1215	transferase activity, transferring glycosyl groups
JM956_RS08560	COG0583	DNA-binding transcription factor activity
JM956_RS08610	COG0406	alpha-ribazole phosphatase activity
JM956_RS08640	COG0367	asparagine synthase
JM956_RS08670	COG1802	Transcriptional regulator
JM956_RS08675	COG0697	spore germination
JM956_RS08680	COG0523	cobalamin synthesis protein
JM956_RS08685	COG0701	Predicted permease
JM956_RS08700	COG1757	Na H antiporter
JM956_RS08705	COG0789	Transcriptional regulator
JM956_RS08730	COG0534	Mate efflux family protein
JM956_RS08735	COG3340	Belongs to the peptidase S51 family
JM956_RS08760	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JM956_RS08790	COG2733	membrane
JM956_RS08825	COG1131	(ABC) transporter
JM956_RS08840	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JM956_RS08845	COG0528	UMP kinase activity
JM956_RS08855	COG1027	Aspartate ammonia-lyase
JM956_RS08860	COG0281	malic enzyme
JM956_RS08865	COG4191	Histidine kinase
JM956_RS08870	COG0784	Response regulator, receiver
JM956_RS08875	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JM956_RS08920	COG2814	Major facilitator Superfamily
JM956_RS08940	COG1695	Transcriptional regulator
JM956_RS08950	COG0477	Major facilitator Superfamily
JM956_RS08960	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JM956_RS08965	COG2223	nitrite transmembrane transporter activity
JM956_RS08970	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JM956_RS08990	COG0733	neurotransmitter:sodium symporter activity
JM956_RS09000	COG5566	PFAM Mor transcription activator
JM956_RS09005	COG2323	membrane
JM956_RS09020	COG2084	Dehydrogenase
JM956_RS09035	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JM956_RS09045	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JM956_RS09050	COG0028	Belongs to the TPP enzyme family
JM956_RS09070	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JM956_RS09095	COG2814	Major facilitator Superfamily
JM956_RS09100	COG3384	dioxygenase
JM956_RS09110	COG3279	Response regulator of the LytR AlgR family
JM956_RS09115	COG0427	acetyl-CoA hydrolase
JM956_RS09135	COG4166	transmembrane transport
JM956_RS09140	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS09160	COG1914	H( )-stimulated, divalent metal cation uptake system
JM956_RS09175	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JM956_RS09180	COG0531	amino acid
JM956_RS09200	COG2309	aminopeptidase activity
JM956_RS09215	COG0456	acetyltransferase
JM956_RS09245	COG1266	CAAX protease self-immunity
JM956_RS09250	COG1309	transcriptional regulator
JM956_RS09255	COG2390	Transcriptional regulator
JM956_RS09265	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM956_RS09270	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JM956_RS09280	COG4846	Membrane protein involved in cytochrome C biogenesis
JM956_RS09290	COG0006	proline dipeptidase activity
JM956_RS09300	COG2132	Multicopper oxidase
JM956_RS09310	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JM956_RS09330	COG1114	Component of the transport system for branched-chain amino acids
JM956_RS09340	COG1276	copper resistance
JM956_RS09340	COG2372	response to copper ion
JM956_RS09345	COG4549	nuclear export factor GLE1
JM956_RS09350	COG0697	spore germination
JM956_RS09355	COG0583	DNA-binding transcription factor activity
JM956_RS09360	COG1959	2 iron, 2 sulfur cluster binding
JM956_RS09365	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JM956_RS09370	COG0778	Nitroreductase
JM956_RS09380	COG0628	permease
JM956_RS09390	COG1231	oxidoreductase activity
JM956_RS09395	COG0523	cobalamin synthesis protein
JM956_RS09405	COG0411	ABC transporter
JM956_RS09425	COG0583	DNA-binding transcription factor activity
JM956_RS09445	COG1846	Transcriptional regulator
JM956_RS09455	COG1271	oxidase subunit
JM956_RS09460	COG1294	oxidase, subunit
JM956_RS09465	COG4988	ABC transporter
JM956_RS09470	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JM956_RS09480	COG1216	Glycosyl transferase, family 2
JM956_RS09520	COG1686	Belongs to the peptidase S11 family
JM956_RS09535	COG0791	NLP P60 protein
JM956_RS09535	COG1388	LysM domain
JM956_RS09545	COG1132	(ABC) transporter
JM956_RS09550	COG0745	RESPONSE REGULATOR receiver
JM956_RS09555	COG5002	protein histidine kinase activity
JM956_RS09560	COG0300	oxidoreductase activity
JM956_RS09580	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
JM956_RS09590	COG0460	homoserine dehydrogenase
JM956_RS09615	COG1316	TRANSCRIPTIONal
JM956_RS09625	COG0745	RESPONSE REGULATOR receiver
JM956_RS09630	COG5002	protein histidine kinase activity
JM956_RS09645	COG1285	pathogenesis
JM956_RS09650	COG1247	-acetyltransferase
JM956_RS09670	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JM956_RS09680	COG1082	Xylose isomerase domain protein TIM barrel
JM956_RS09690	COG2814	Major facilitator Superfamily
JM956_RS09695	COG1279	arginine transmembrane transporter activity
JM956_RS09700	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM956_RS09710	COG1752	Esterase of the alpha-beta hydrolase superfamily
JM956_RS09745	COG0577	efflux transmembrane transporter activity
JM956_RS09750	COG2002	toxin-antitoxin pair type II binding
JM956_RS09755	COG1404	Belongs to the peptidase S8 family
JM956_RS09760	COG0640	Transcriptional regulator
JM956_RS09765	COG0667	Aldo Keto reductase
JM956_RS09770	COG2814	Major facilitator Superfamily
JM956_RS09775	COG3152	Membrane
JM956_RS09800	COG0840	transmembrane signaling receptor activity
JM956_RS09815	COG3949	Membrane
JM956_RS09820	COG0783	Belongs to the Dps family
JM956_RS09835	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JM956_RS09845	COG1231	oxidoreductase activity
JM956_RS09850	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS09855	COG4989	oxidoreductase activity
JM956_RS09860	COG0523	cobalamin synthesis protein
JM956_RS09865	COG0456	acetyltransferase
JM956_RS09870	COG0803	Belongs to the bacterial solute-binding protein 9 family
JM956_RS09880	COG0702	epimerase
JM956_RS09890	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JM956_RS09900	COG4166	transmembrane transport
JM956_RS09925	COG5337	Spore coat protein CotH
JM956_RS09930	COG1051	belongs to the nudix hydrolase family
JM956_RS09935	COG0586	Pfam SNARE associated Golgi protein
JM956_RS09940	COG2244	polysaccharide biosynthetic process
JM956_RS09950	COG0701	Predicted permease
JM956_RS09955	COG3689	TIGRFAM TIGR03943 family protein
JM956_RS09960	COG1607	acyl-coa hydrolase
JM956_RS09970	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JM956_RS09985	COG0702	epimerase
JM956_RS09990	COG2839	Protein conserved in bacteria
JM956_RS09995	COG1253	flavin adenine dinucleotide binding
JM956_RS10015	COG1114	Component of the transport system for branched-chain amino acids
JM956_RS10020	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JM956_RS10040	COG0860	N-Acetylmuramoyl-L-alanine amidase
JM956_RS10050	COG1876	peptidase activity
JM956_RS10060	COG2211	Major facilitator Superfamily
JM956_RS10075	COG0860	N-Acetylmuramoyl-L-alanine amidase
JM956_RS10085	COG0561	phosphatase activity
JM956_RS10100	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JM956_RS10115	COG1819	glycosyl
JM956_RS10120	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM956_RS10125	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM956_RS10155	COG0456	acetyltransferase
JM956_RS10195	COG4499	WXG100 protein secretion system (Wss), protein YukC
JM956_RS10240	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JM956_RS10300	COG3646	Phage regulatory protein
JM956_RS10330	COG0305	Participates in initiation and elongation during chromosome replication
JM956_RS10525	COG3874	Sporulation protein YtfJ
JM956_RS10550	COG2226	methyltransferase
JM956_RS10570	COG1082	Xylose isomerase domain protein TIM barrel
JM956_RS10575	COG0346	lactoylglutathione lyase activity
JM956_RS10585	COG0604	alcohol dehydrogenase
JM956_RS10590	COG1595	DNA-templated transcription, initiation
JM956_RS10605	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JM956_RS10605	COG0426	domain, Protein
JM956_RS10615	COG0386	Belongs to the glutathione peroxidase family
JM956_RS10620	COG1305	Transglutaminase-like
JM956_RS10625	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
JM956_RS10630	COG0714	Associated with various cellular activities
JM956_RS10635	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JM956_RS10640	COG1140	nitrate reductase beta subunit
JM956_RS10645	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JM956_RS10650	COG2181	nitrate reductase activity
JM956_RS10655	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JM956_RS10660	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JM956_RS10665	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JM956_RS10670	COG0303	'Molybdopterin
JM956_RS10675	COG0314	molybdopterin synthase activity
JM956_RS10685	COG2223	nitrite transmembrane transporter activity
JM956_RS10700	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JM956_RS10700	COG1648	precorrin-2 dehydrogenase activity
JM956_RS10710	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JM956_RS10710	COG1587	Uroporphyrinogen-III synthase
JM956_RS10715	COG2146	nitrite reductase [NAD(P)H] activity
JM956_RS10720	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JM956_RS10725	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
JM956_RS10745	COG2162	N-hydroxyarylamine O-acetyltransferase activity
JM956_RS10760	COG2359	stage V sporulation protein S
JM956_RS10805	COG0457	Tetratricopeptide repeat
JM956_RS10820	COG2856	Zn peptidase
JM956_RS10825	COG3620	sequence-specific DNA binding
JM956_RS10915	COG0582	viral genome integration into host DNA
JM956_RS10935	COG0582	viral genome integration into host DNA
JM956_RS10950	COG5484	DNA packaging
JM956_RS10955	COG1783	phage Terminase large subunit
JM956_RS10970	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JM956_RS11095	COG2801	Transposase and inactivated derivatives
JM956_RS11120	COG1418	mRNA catabolic process
JM956_RS11125	COG0488	(ABC) transporter
JM956_RS11145	COG1476	TRANSCRIPTIONal
JM956_RS11185	COG1752	Esterase of the alpha-beta hydrolase superfamily
JM956_RS11225	COG3012	SEC-C Motif Domain Protein
JM956_RS11270	COG1413	lyase activity
JM956_RS11285	COG2521	methyltransferase
JM956_RS11285	COG2136	Putative SAM-dependent methyltransferase
JM956_RS11290	COG0018	arginyl-trna synthetase
JM956_RS11330	COG0017	Asparaginyl-tRNA synthetase
JM956_RS11335	COG0733	neurotransmitter:sodium symporter activity
JM956_RS11360	COG2610	gluconate transmembrane transporter activity
JM956_RS11380	COG0456	acetyltransferase
JM956_RS11385	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JM956_RS11395	COG1131	(ABC) transporter
JM956_RS11400	COG4473	ABC transporter
JM956_RS11410	COG0546	phosphoglycolate phosphatase activity
JM956_RS11425	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM956_RS11440	COG0768	penicillin binding
JM956_RS11450	COG0204	Acyl-transferase
JM956_RS11455	COG1272	protein, Hemolysin III
JM956_RS11465	COG0805	protein transport
JM956_RS11475	COG1307	EDD domain protein, DegV family
JM956_RS11485	COG1999	signal sequence binding
JM956_RS11490	COG0071	Belongs to the small heat shock protein (HSP20) family
JM956_RS11495	COG0367	asparagine synthase
JM956_RS11510	COG0860	N-Acetylmuramoyl-L-alanine amidase
JM956_RS11515	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM956_RS11520	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JM956_RS11540	COG1335	isochorismatase
JM956_RS11555	COG0668	transmembrane transport
JM956_RS11560	COG2203	Gaf domain
JM956_RS11560	COG4585	Histidine kinase
JM956_RS11565	COG2197	response regulator
JM956_RS11570	COG1737	Transcriptional regulator
JM956_RS11575	COG0384	phenazine biosynthesis protein PhzF
JM956_RS11580	COG1064	alcohol dehydrogenase
JM956_RS11605	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JM956_RS11640	COG1125	glycine betaine transport
JM956_RS11640	COG0517	IMP dehydrogenase activity
JM956_RS11645	COG1174	glycine betaine transport
JM956_RS11680	COG1253	flavin adenine dinucleotide binding
JM956_RS11685	COG1012	belongs to the aldehyde dehydrogenase family
JM956_RS11690	COG5506	Protein of unknown function (DUF1694)
JM956_RS11705	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JM956_RS11710	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JM956_RS11715	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JM956_RS11720	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JM956_RS11725	COG0456	acetyltransferase
JM956_RS11730	COG3829	transcription factor binding
JM956_RS11735	COG1509	lysine 2,3-aminomutase activity
JM956_RS11770	COG0515	serine threonine protein kinase
JM956_RS11770	COG4991	sh3 domain protein
JM956_RS11770	COG3064	Membrane
JM956_RS11780	COG0671	phosphoesterase, PA-phosphatase related
JM956_RS11785	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JM956_RS11790	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JM956_RS11885	COG0300	oxidoreductase activity
JM956_RS11905	COG4499	WXG100 protein secretion system (Wss), protein YukC
JM956_RS11905	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JM956_RS11915	COG2814	Major facilitator Superfamily
JM956_RS11920	COG4841	protein insertion into membrane
JM956_RS11925	COG0372	Belongs to the citrate synthase family
JM956_RS11930	COG2079	MmgE PrpD family protein
JM956_RS11935	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JM956_RS11940	COG1960	acyl-CoA dehydrogenase activity
JM956_RS11945	COG2084	Dehydrogenase
JM956_RS11955	COG1280	lysine exporter protein (LysE YggA)
JM956_RS11960	COG1024	Enoyl-CoA hydratase
JM956_RS11975	COG0420	3'-5' exonuclease activity
JM956_RS11980	COG0419	ATPase involved in DNA repair
JM956_RS11985	COG0582	viral genome integration into host DNA
JM956_RS12015	COG1484	DNA-dependent DNA replication
JM956_RS12090	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JM956_RS12090	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JM956_RS12115	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JM956_RS12145	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
JM956_RS12225	COG0582	viral genome integration into host DNA
JM956_RS12385	COG2223	nitrite transmembrane transporter activity
JM956_RS12390	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS12395	COG1169	isochorismate synthase
JM956_RS12400	COG1021	2,3-dihydroxybenzoate-AMP ligase
JM956_RS12405	COG1535	isochorismatase
JM956_RS12405	COG3433	isochorismatase activity
JM956_RS12410	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JM956_RS12415	COG3251	PFAM MbtH domain protein
JM956_RS12420	COG2814	Major facilitator Superfamily
JM956_RS12435	COG0776	regulation of translation
JM956_RS12445	COG2318	DinB family
JM956_RS12455	COG1115	amino acid carrier protein
JM956_RS12470	COG2329	Antibiotic biosynthesis monooxygenase
JM956_RS12475	COG1187	pseudouridine synthase activity
JM956_RS12480	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JM956_RS12485	COG1136	(ABC) transporter
JM956_RS12530	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JM956_RS12555	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM956_RS12590	COG1247	-acetyltransferase
JM956_RS12615	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JM956_RS12625	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS12655	COG0583	DNA-binding transcription factor activity
JM956_RS12660	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JM956_RS12680	COG0583	DNA-binding transcription factor activity
JM956_RS12685	COG2258	MOSC domain
JM956_RS12700	COG1132	(ABC) transporter
JM956_RS12705	COG1132	(ABC) transporter
JM956_RS12730	COG1396	sequence-specific DNA binding
JM956_RS12765	COG1595	DNA-templated transcription, initiation
JM956_RS12795	COG1649	PFAM Uncharacterised BCR, COG1649
JM956_RS12820	COG2971	BadF BadG BcrA BcrD
JM956_RS12830	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JM956_RS12840	COG1846	Transcriptional regulator
JM956_RS12855	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM956_RS12870	COG3344	reverse transcriptase
JM956_RS12890	COG0582	viral genome integration into host DNA
JM956_RS12925	COG3615	Tellurite resistance protein tehB
JM956_RS12925	COG0500	methyltransferase
JM956_RS12945	COG1846	Transcriptional regulator
JM956_RS12975	COG2195	Cleaves the N-terminal amino acid of tripeptides
JM956_RS13000	COG2002	toxin-antitoxin pair type II binding
JM956_RS13010	COG0730	response to heat
JM956_RS13015	COG0110	maltose O-acetyltransferase activity
JM956_RS13020	COG1686	Belongs to the peptidase S11 family
JM956_RS13035	COG2814	Major facilitator Superfamily
JM956_RS13070	COG1115	amino acid carrier protein
JM956_RS13075	COG2066	Belongs to the glutaminase family
JM956_RS13080	COG4191	Histidine kinase
JM956_RS13085	COG0784	Response regulator, receiver
JM956_RS13090	COG0697	spore germination
JM956_RS13095	COG0531	amino acid
JM956_RS13115	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JM956_RS13120	COG1114	Component of the transport system for branched-chain amino acids
JM956_RS13125	COG0531	amino acid
JM956_RS13130	COG0322	excinuclease ABC activity
JM956_RS13145	COG2207	Transcriptional regulator
JM956_RS13170	COG5002	protein histidine kinase activity
JM956_RS13205	COG0741	lytic transglycosylase activity
JM956_RS13210	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS13245	COG1396	sequence-specific DNA binding
JM956_RS13270	COG0768	penicillin binding
JM956_RS13275	COG1595	DNA-templated transcription, initiation
JM956_RS13285	COG0768	penicillin binding
JM956_RS13290	COG0768	penicillin binding
JM956_RS13300	COG1408	metallophosphoesterase
JM956_RS13310	COG1131	(ABC) transporter
JM956_RS13320	COG1309	transcriptional regulator
JM956_RS13335	COG1960	acyl-CoA dehydrogenase activity
JM956_RS13340	COG0439	Biotin carboxylase
JM956_RS13345	COG0511	ligase activity, forming carbon-carbon bonds
JM956_RS13350	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JM956_RS13355	COG1024	Enoyl-CoA hydratase
JM956_RS13360	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JM956_RS13365	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JM956_RS13400	COG1686	Belongs to the peptidase S11 family
JM956_RS13425	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JM956_RS13440	COG3227	Zinc metalloprotease (Elastase)
JM956_RS13445	COG2207	Transcriptional regulator
JM956_RS13480	COG2814	Major facilitator Superfamily
JM956_RS13490	COG1733	regulation of RNA biosynthetic process
JM956_RS13495	COG2226	methyltransferase
JM956_RS13510	COG1942	4-Oxalocrotonate Tautomerase
JM956_RS13515	COG0583	DNA-binding transcription factor activity
JM956_RS13540	COG0697	spore germination
JM956_RS13545	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM956_RS13560	COG0693	protein deglycase activity
JM956_RS13580	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JM956_RS13590	COG3386	PFAM SMP-30 Gluconolaconase
JM956_RS13605	COG3773	Cell wall hydrolase
JM956_RS13615	COG0745	RESPONSE REGULATOR receiver
JM956_RS13620	COG2205	protein histidine kinase activity
JM956_RS13625	COG0488	(ABC) transporter
JM956_RS13635	COG1136	(ABC) transporter
JM956_RS13640	COG0577	efflux transmembrane transporter activity
JM956_RS13665	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM956_RS13675	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JM956_RS13700	COG0582	viral genome integration into host DNA
JM956_RS13715	COG1396	sequence-specific DNA binding
JM956_RS13750	COG2002	toxin-antitoxin pair type II binding
JM956_RS13805	COG0582	viral genome integration into host DNA
JM956_RS13850	COG4626	Terminase
JM956_RS13850	COG1802	Transcriptional regulator
JM956_RS13860	COG0740	serine-type endopeptidase activity
JM956_RS13985	COG2124	cytochrome p450
JM956_RS14020	COG0561	phosphatase activity
JM956_RS14025	COG5002	protein histidine kinase activity
JM956_RS14030	COG0768	penicillin binding
JM956_RS14035	COG1819	glycosyl
JM956_RS14040	COG1794	racemase activity, acting on amino acids and derivatives
JM956_RS14065	COG2205	protein histidine kinase activity
JM956_RS14120	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JM956_RS14125	COG0604	alcohol dehydrogenase
JM956_RS14130	COG0671	phosphoesterase, PA-phosphatase related
JM956_RS14135	COG0768	penicillin binding
JM956_RS14145	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS14190	COG0584	glycerophosphoryl diester phosphodiesterase
JM956_RS14210	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM956_RS14215	COG0697	spore germination
JM956_RS14250	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM956_RS14260	COG2223	nitrite transmembrane transporter activity
JM956_RS14280	COG0592	DNA-directed DNA polymerase activity
JM956_RS14300	COG3878	Protein conserved in bacteria
JM956_RS14325	COG4667	esterase of the alpha-beta hydrolase superfamily
JM956_RS14365	COG0322	excinuclease ABC activity
JM956_RS14410	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JM956_RS14435	COG1011	Hydrolase
JM956_RS14440	COG0745	RESPONSE REGULATOR receiver
JM956_RS14445	COG5002	protein histidine kinase activity
JM956_RS14455	COG1136	(ABC) transporter
JM956_RS14460	COG0577	efflux transmembrane transporter activity
JM956_RS14465	COG1073	alpha beta
JM956_RS14470	COG0657	acetylesterase activity
JM956_RS14475	COG0076	glutamate decarboxylase activity
JM956_RS14490	COG1523	belongs to the glycosyl hydrolase 13 family
JM956_RS14495	COG3227	Zinc metalloprotease (Elastase)
JM956_RS14500	COG0737	Belongs to the 5'-nucleotidase family
JM956_RS14520	COG0201	protein transport
JM956_RS14525	COG0697	spore germination
JM956_RS14530	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM956_RS14565	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS14580	COG2959	enzyme of heme biosynthesis
JM956_RS14620	COG1309	transcriptional regulator
JM956_RS14650	COG3284	Transcriptional regulator
JM956_RS14665	COG1349	DNA-binding transcription factor activity
JM956_RS14680	COG1959	2 iron, 2 sulfur cluster binding
JM956_RS14700	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JM956_RS14705	COG0508	dehydrogenase complex catalyzes the overall conversion of
JM956_RS14710	COG0022	dehydrogenase e1 component
JM956_RS14715	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JM956_RS14725	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS14755	COG4176	ABC-type proline glycine betaine transport system permease component
JM956_RS14760	COG0517	IMP dehydrogenase activity
JM956_RS14760	COG4175	Glycine betaine
JM956_RS14790	COG2153	protein acetylation
JM956_RS14795	COG3397	chitin binding
JM956_RS14815	COG2205	protein histidine kinase activity
JM956_RS14820	COG2226	methyltransferase
JM956_RS14825	COG2315	Protein conserved in bacteria
JM956_RS14875	COG0456	acetyltransferase
JM956_RS14880	COG3973	AAA domain
JM956_RS14895	COG0514	ATP-dependent DNA helicase (RecQ)
JM956_RS14935	COG4637	Psort location Cytoplasmic, score
JM956_RS14950	COG3397	chitin binding
JM956_RS14965	COG1162	GTPase activity
JM956_RS14970	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JM956_RS14975	COG1115	amino acid carrier protein
JM956_RS14980	COG1012	belongs to the aldehyde dehydrogenase family
JM956_RS14985	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JM956_RS14995	COG3938	Belongs to the proline racemase family
JM956_RS15000	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JM956_RS15045	COG1078	dGTPase activity
JM956_RS15050	COG0586	Pfam SNARE associated Golgi protein
JM956_RS15060	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JM956_RS15065	COG4166	transmembrane transport
JM956_RS15075	COG4948	Mandelate Racemase Muconate Lactonizing
JM956_RS15090	COG0667	Aldo Keto reductase
JM956_RS15135	COG3850	Histidine kinase
JM956_RS15135	COG5002	protein histidine kinase activity
JM956_RS15140	COG0745	RESPONSE REGULATOR receiver
JM956_RS15170	COG1164	Oligoendopeptidase f
JM956_RS15175	COG1307	EDD domain protein, DegV family
JM956_RS15220	COG2814	Major facilitator Superfamily
JM956_RS15230	COG1664	Polymer-forming cytoskeletal
JM956_RS15235	COG0789	Transcriptional regulator
JM956_RS15240	COG4533	DNA binding
JM956_RS15245	COG2814	Major facilitator Superfamily
JM956_RS15245	COG0477	Major facilitator Superfamily
JM956_RS15265	COG2261	transglycosylase associated protein
JM956_RS15280	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JM956_RS15315	COG0436	Aminotransferase
JM956_RS15320	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JM956_RS15370	COG0628	permease
JM956_RS15385	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JM956_RS15390	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JM956_RS15420	COG2746	aminoglycoside 3-N-acetyltransferase activity
JM956_RS15440	COG0697	spore germination
JM956_RS15465	COG4912	Dna alkylation repair
JM956_RS15470	COG0346	lactoylglutathione lyase activity
JM956_RS15485	COG0861	Integral membrane protein TerC family
JM956_RS15490	COG1368	sulfuric ester hydrolase activity
JM956_RS15495	COG0488	(ABC) transporter
JM956_RS15570	COG4974	Belongs to the 'phage' integrase family
JM956_RS15575	COG2409	Drug exporters of the RND superfamily
JM956_RS15575	COG1033	growth of symbiont in host cell
JM956_RS15580	COG1309	transcriptional regulator
JM956_RS15595	COG0287	Prephenate dehydrogenase
JM956_RS15610	COG1605	Chorismate mutase
JM956_RS15610	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JM956_RS15650	COG3584	3D domain protein
JM956_RS15650	COG1388	LysM domain
JM956_RS15660	COG0346	lactoylglutathione lyase activity
JM956_RS15675	COG1595	DNA-templated transcription, initiation
JM956_RS15710	COG1172	Belongs to the binding-protein-dependent transport system permease family
JM956_RS15720	COG2390	Transcriptional regulator
JM956_RS15725	COG1070	Carbohydrate kinase
JM956_RS15745	COG2329	Antibiotic biosynthesis monooxygenase
JM956_RS15765	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM956_RS15780	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JM956_RS15785	COG4187	Peptidase family M20/M25/M40
JM956_RS15790	COG1414	Transcriptional regulator
JM956_RS15795	COG0833	amino acid
JM956_RS15805	COG3239	Fatty acid desaturase
JM956_RS15815	COG2720	vancomycin resistance protein
JM956_RS15820	COG1785	Belongs to the alkaline phosphatase family
JM956_RS15830	COG3655	Transcriptional regulator
JM956_RS15850	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS15855	COG0346	lactoylglutathione lyase activity
JM956_RS15875	COG0714	Associated with various cellular activities
JM956_RS15900	COG0463	Glycosyl transferase, family 2
JM956_RS15915	COG0463	Glycosyl transferase, family 2
JM956_RS15925	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JM956_RS15930	COG0753	catalase activity
JM956_RS15965	COG0714	Associated with various cellular activities
JM956_RS16035	COG0778	Nitroreductase
JM956_RS16040	COG1846	Transcriptional regulator
JM956_RS16060	COG3831	ATPase activity
JM956_RS16060	COG4884	unkown
JM956_RS16075	COG1136	(ABC) transporter
JM956_RS16105	COG0590	tRNA wobble adenosine to inosine editing
JM956_RS16105	COG0037	tRNA processing
JM956_RS16115	COG0456	acetyltransferase
JM956_RS16130	COG0697	spore germination
JM956_RS16135	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM956_RS16155	COG0642	Histidine kinase
JM956_RS16160	COG0745	RESPONSE REGULATOR receiver
JM956_RS16165	COG0596	Alpha beta hydrolase
JM956_RS16195	COG0730	response to heat
JM956_RS16205	COG0833	amino acid
JM956_RS16225	COG5002	protein histidine kinase activity
JM956_RS16230	COG0745	RESPONSE REGULATOR receiver
JM956_RS16240	COG0577	efflux transmembrane transporter activity
JM956_RS16240	COG1136	(ABC) transporter
JM956_RS16270	COG0768	penicillin binding
JM956_RS16305	COG1984	allophanate hydrolase subunit 2
JM956_RS16310	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JM956_RS16315	COG1414	Transcriptional regulator
JM956_RS16330	COG0640	Transcriptional regulator
JM956_RS16340	COG1960	acyl-CoA dehydrogenase activity
JM956_RS16355	COG3314	Sporulation integral membrane protein YlbJ
JM956_RS16390	COG3848	Pyruvate phosphate dikinase
JM956_RS16390	COG0574	Belongs to the PEP-utilizing enzyme family
JM956_RS16400	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM956_RS16415	COG5577	PFAM Coat F domain
JM956_RS16420	COG3403	YqcI/YcgG family
JM956_RS16425	COG1280	lysine exporter protein (LysE YggA)
JM956_RS16430	COG1113	amino acid transport
JM956_RS16460	COG1063	alcohol dehydrogenase
JM956_RS16470	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JM956_RS16480	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JM956_RS16495	COG0737	Belongs to the 5'-nucleotidase family
JM956_RS16500	COG2267	carboxylic ester hydrolase activity
JM956_RS16505	COG1335	isochorismatase
JM956_RS16515	COG0583	DNA-binding transcription factor activity
JM956_RS16520	COG0598	Magnesium transport protein CorA
JM956_RS16540	COG1073	alpha beta
JM956_RS16560	COG0415	Belongs to the DNA photolyase family
JM956_RS16585	COG0288	reversible hydration of carbon dioxide
JM956_RS16595	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JM956_RS16600	COG5609	conserved protein (DUF2294)
JM956_RS16615	COG0697	spore germination
JM956_RS16625	COG0456	acetyltransferase
JM956_RS16630	COG1575	Belongs to the MenA family. Type 1 subfamily
JM956_RS16635	COG0803	Belongs to the bacterial solute-binding protein 9 family
JM956_RS16640	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JM956_RS16645	COG1121	(ABC) transporter
JM956_RS16670	COG0798	PFAM Bile acid sodium symporter
JM956_RS16675	COG0346	lactoylglutathione lyase activity
JM956_RS16680	COG0640	Transcriptional regulator
JM956_RS16700	COG0346	lactoylglutathione lyase activity
JM956_RS16725	COG0745	RESPONSE REGULATOR receiver
JM956_RS16730	COG5002	protein histidine kinase activity
JM956_RS16730	COG3850	Histidine kinase
JM956_RS16765	COG2197	response regulator
JM956_RS16795	COG2814	Major facilitator Superfamily
JM956_RS16810	COG2515	1-aminocyclopropane-1-carboxylate deaminase
JM956_RS16825	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
JM956_RS16845	COG0577	efflux transmembrane transporter activity
JM956_RS16860	COG3850	Histidine kinase
JM956_RS16860	COG5002	protein histidine kinase activity
JM956_RS16870	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM956_RS16900	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JM956_RS16920	COG0662	Cupin 2, conserved barrel domain protein
JM956_RS16925	COG2207	Transcriptional regulator
JM956_RS16925	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM956_RS16945	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM956_RS16945	COG3409	Peptidoglycan-binding domain 1 protein
JM956_RS17190	COG2849	repeat protein
JM956_RS17230	COG5444	nuclease activity
JM956_RS17305	COG1876	peptidase activity
JM956_RS17310	COG2843	Capsule synthesis protein
JM956_RS17320	COG0477	Major facilitator Superfamily
JM956_RS17335	COG1846	Transcriptional regulator
JM956_RS17340	COG2814	Major facilitator Superfamily
JM956_RS17350	COG2031	fatty acid transporter
JM956_RS17365	COG2249	NAD(P)H dehydrogenase (quinone) activity
JM956_RS17420	COG1288	antiporter activity
JM956_RS17425	COG2356	endonuclease I
JM956_RS17430	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JM956_RS17450	COG1733	regulation of RNA biosynthetic process
JM956_RS17455	COG0778	Nitroreductase
JM956_RS17485	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS17495	COG1131	(ABC) transporter
JM956_RS17520	COG1011	Hydrolase
JM956_RS17525	COG2365	Tyrosine phosphatase family
JM956_RS17560	COG0628	permease
JM956_RS17620	COG1253	flavin adenine dinucleotide binding
JM956_RS17625	COG0789	Transcriptional regulator
JM956_RS17635	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JM956_RS17660	COG0697	spore germination
JM956_RS17670	COG1357	PFAM Pentapeptide repeats (8 copies)
JM956_RS17675	COG3813	Protein conserved in bacteria
JM956_RS17680	COG2706	6-phosphogluconolactonase activity
JM956_RS17685	COG1070	Carbohydrate kinase
JM956_RS17695	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JM956_RS17700	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JM956_RS17710	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JM956_RS17740	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JM956_RS17740	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JM956_RS17745	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JM956_RS17745	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JM956_RS17750	COG1733	regulation of RNA biosynthetic process
JM956_RS17780	COG0814	amino acid
JM956_RS17810	COG2188	Transcriptional regulator
JM956_RS17815	COG0673	inositol 2-dehydrogenase activity
JM956_RS17835	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM956_RS17855	COG0384	phenazine biosynthesis protein PhzF
JM956_RS17875	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS17880	COG2249	NAD(P)H dehydrogenase (quinone) activity
JM956_RS17885	COG1733	regulation of RNA biosynthetic process
JM956_RS17890	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JM956_RS17920	COG1191	sigma factor activity
JM956_RS17975	COG1151	hydroxylamine reductase activity
JM956_RS18005	COG2072	flavoprotein involved in K transport
JM956_RS18040	COG0604	alcohol dehydrogenase
JM956_RS18045	COG1113	amino acid transport
JM956_RS18050	COG2814	Major facilitator Superfamily
JM956_RS18080	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JM956_RS18085	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JM956_RS18100	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM956_RS18105	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM956_RS18110	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM956_RS18115	COG3739	integral membrane protein
JM956_RS18145	COG0583	DNA-binding transcription factor activity
JM956_RS18165	COG1193	negative regulation of DNA recombination
JM956_RS18180	COG2162	N-hydroxyarylamine O-acetyltransferase activity
JM956_RS18185	COG1164	Oligoendopeptidase f
JM956_RS18190	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM956_RS18215	COG0584	glycerophosphoryl diester phosphodiesterase
JM956_RS18225	COG0640	Transcriptional regulator
JM956_RS18230	COG0604	alcohol dehydrogenase
JM956_RS18240	COG0457	Tetratricopeptide repeat
JM956_RS18250	COG2808	Putative FMN-binding domain
JM956_RS18255	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JM956_RS18265	COG0385	Bile acid
JM956_RS18270	COG0277	FAD linked oxidase domain protein
JM956_RS18295	COG0457	Tetratricopeptide repeat
JM956_RS18330	COG2205	protein histidine kinase activity
JM956_RS18335	COG0745	RESPONSE REGULATOR receiver
JM956_RS18355	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
JM956_RS18365	COG2814	Major facilitator Superfamily
JM956_RS18405	COG3300	MHYT domain
JM956_RS18405	COG5001	Diguanylate cyclase
JM956_RS18410	COG0488	(ABC) transporter
JM956_RS18440	COG3852	Histidine kinase
JM956_RS18450	COG1285	pathogenesis
JM956_RS18460	COG2514	catechol 2,3-dioxygenase activity
JM956_RS18465	COG2720	vancomycin resistance protein
JM956_RS18500	COG0716	FMN binding
JM956_RS18510	COG1051	belongs to the nudix hydrolase family
JM956_RS18530	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS18540	COG0165	Argininosuccinate lyase
JM956_RS18555	COG4145	pantothenate transmembrane transporter activity
JM956_RS18565	COG1012	belongs to the aldehyde dehydrogenase family
JM956_RS18570	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS18585	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
JM956_RS18590	COG2962	Rard protein
JM956_RS18595	COG3326	Membrane
JM956_RS18610	COG0489	protein tyrosine kinase activity
JM956_RS18620	COG0314	molybdopterin synthase activity
JM956_RS18625	COG0303	'Molybdopterin
JM956_RS18630	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JM956_RS18635	COG2116	formate transmembrane transporter activity
JM956_RS18645	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JM956_RS18650	COG5609	conserved protein (DUF2294)
JM956_RS18655	COG2427	Protein of unknown function (DUF1641)
JM956_RS18660	COG3383	formate dehydrogenase (NAD+) activity
JM956_RS18665	COG0697	spore germination
JM956_RS18710	COG2226	methyltransferase
JM956_RS18715	COG4166	transmembrane transport
JM956_RS18725	COG4166	transmembrane transport
JM956_RS18730	COG1301	dicarboxylic acid transport
JM956_RS18735	COG1316	TRANSCRIPTIONal
JM956_RS18745	COG1595	DNA-templated transcription, initiation
JM956_RS18755	COG1131	(ABC) transporter
JM956_RS18765	COG0673	inositol 2-dehydrogenase activity
JM956_RS18770	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JM956_RS18775	COG0187	DNA topoisomerase II activity
JM956_RS18780	COG1832	CoA-binding protein
JM956_RS18785	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JM956_RS18790	COG0745	RESPONSE REGULATOR receiver
JM956_RS18810	COG4841	protein insertion into membrane
JM956_RS18815	COG0824	Thioesterase
JM956_RS18845	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JM956_RS18860	COG1132	(ABC) transporter
JM956_RS18865	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JM956_RS18895	COG2211	Major facilitator Superfamily
JM956_RS18905	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JM956_RS18920	COG0183	Belongs to the thiolase family
JM956_RS18925	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS18930	COG1268	BioY protein
JM956_RS18935	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS18940	COG1396	sequence-specific DNA binding
JM956_RS18980	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM956_RS18990	COG5002	protein histidine kinase activity
JM956_RS18995	COG0400	carboxylic ester hydrolase activity
JM956_RS19000	COG0346	lactoylglutathione lyase activity
JM956_RS19005	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JM956_RS19015	COG0069	glutamate synthase activity
JM956_RS19020	COG1902	pentaerythritol trinitrate reductase activity
JM956_RS19025	COG1329	Transcriptional regulator
JM956_RS19030	COG0010	Belongs to the arginase family
JM956_RS19055	COG2226	methyltransferase
JM956_RS19080	COG4846	Membrane protein involved in cytochrome C biogenesis
JM956_RS19085	COG0785	Cytochrome C biogenesis protein
JM956_RS19095	COG1473	amidohydrolase
JM956_RS19110	COG1131	(ABC) transporter
JM956_RS19125	COG0583	DNA-binding transcription factor activity
JM956_RS19135	COG1346	cytolysis
JM956_RS19150	COG0730	response to heat
JM956_RS19175	COG1132	(ABC) transporter
JM956_RS19180	COG1132	(ABC) transporter
JM956_RS19205	COG3639	organic phosphonate transmembrane transporter activity
JM956_RS19220	COG0737	Belongs to the 5'-nucleotidase family
JM956_RS19230	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JM956_RS19250	COG1695	Transcriptional regulator
JM956_RS19265	COG0739	heme binding
JM956_RS19270	COG0741	lytic transglycosylase activity
JM956_RS19305	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JM956_RS19310	COG0174	glutamine synthetase
JM956_RS19315	COG0789	Transcriptional regulator
JM956_RS19320	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
JM956_RS19325	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JM956_RS19330	COG2860	membrane
JM956_RS19340	COG0464	growth
JM956_RS19370	COG1388	LysM domain
JM956_RS19370	COG3584	3D domain protein
JM956_RS19375	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JM956_RS19375	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JM956_RS19375	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JM956_RS19380	COG1105	Belongs to the carbohydrate kinase PfkB family
JM956_RS19385	COG1349	DNA-binding transcription factor activity
JM956_RS19390	COG1979	alcohol dehydrogenase
JM956_RS19395	COG2322	membrane
JM956_RS19405	COG1113	amino acid transport
JM956_RS19415	COG1473	amidohydrolase
JM956_RS19420	COG1408	metallophosphoesterase
JM956_RS19425	COG2116	formate transmembrane transporter activity
JM956_RS19440	COG2217	Heavy metal translocating P-type atpase
JM956_RS19445	COG2608	mercury ion transmembrane transporter activity
JM956_RS19450	COG1937	Protein conserved in bacteria
JM956_RS19460	COG2819	hydrolase of the alpha beta superfamily
JM956_RS19465	COG1120	ATPase activity
JM956_RS19470	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM956_RS19475	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM956_RS19480	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM956_RS19485	COG0708	Exodeoxyribonuclease III
JM956_RS19490	COG2169	Transcriptional regulator
JM956_RS19495	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JM956_RS19500	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JM956_RS19510	COG2364	Membrane
JM956_RS19525	COG2267	carboxylic ester hydrolase activity
JM956_RS19530	COG5001	Diguanylate cyclase
JM956_RS19530	COG3300	MHYT domain
JM956_RS19550	COG1086	Polysaccharide biosynthesis protein
JM956_RS19570	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM956_RS19580	COG0840	transmembrane signaling receptor activity
JM956_RS19590	COG1404	Belongs to the peptidase S8 family
JM956_RS19595	COG3773	Cell wall hydrolase
JM956_RS19605	COG1368	sulfuric ester hydrolase activity
JM956_RS19610	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JM956_RS19635	COG4550	Control of competence regulator ComK, YlbF/YmcA
JM956_RS19645	COG1013	pyruvate-flavodoxin oxidoreductase activity
JM956_RS19650	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JM956_RS19650	COG0674	pyruvate-flavodoxin oxidoreductase activity
JM956_RS19660	COG2359	stage V sporulation protein S
JM956_RS19665	COG1692	metallophosphoesterase
JM956_RS19685	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JM956_RS19690	COG1426	Protein conserved in bacteria
JM956_RS19705	COG0300	oxidoreductase activity
JM956_RS19710	COG0612	Peptidase, M16
JM956_RS19715	COG0612	Peptidase, M16
JM956_RS19720	COG1079	Belongs to the binding-protein-dependent transport system permease family
JM956_RS19725	COG4603	Belongs to the binding-protein-dependent transport system permease family
JM956_RS19730	COG3845	ABC transporter
JM956_RS19735	COG1744	ABC transporter substrate-binding protein PnrA-like
JM956_RS19740	COG2188	Transcriptional regulator
JM956_RS19755	COG0740	serine-type endopeptidase activity
JM956_RS19760	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JM956_RS19770	COG0527	aspartate kinase activity
JM956_RS19775	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JM956_RS19780	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JM956_RS19800	COG4824	toxin secretion phage lysis holin
JM956_RS19920	COG0531	amino acid
JM956_RS19930	COG0582	viral genome integration into host DNA
JM956_RS19960	COG0305	Participates in initiation and elongation during chromosome replication
JM956_RS20005	COG1396	sequence-specific DNA binding
JM956_RS20030	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JM956_RS20035	COG1873	PFAM PRC-barrel domain
JM956_RS20040	COG0612	Peptidase, M16
JM956_RS20045	COG0726	polysaccharide deacetylase
JM956_RS20060	COG0196	riboflavin kinase activity
JM956_RS20070	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JM956_RS20075	COG1550	Protein conserved in bacteria
JM956_RS20085	COG1358	cellular component organization or biogenesis
JM956_RS20090	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JM956_RS20095	COG0195	Participates in both transcription termination and antitermination
JM956_RS20115	COG0750	zinc metalloprotease
JM956_RS20125	COG4589	Belongs to the CDS family
JM956_RS20170	COG4974	Belongs to the 'phage' integrase family
JM956_RS20180	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JM956_RS20185	COG0758	DNA mediated transformation
JM956_RS20190	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JM956_RS20230	COG1837	Belongs to the UPF0109 family
JM956_RS20240	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JM956_RS20250	COG0552	protein localization to endoplasmic reticulum
JM956_RS20255	COG1196	nuclear chromosome segregation
JM956_RS20265	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JM956_RS20270	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS20275	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JM956_RS20290	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JM956_RS20295	COG1461	Dihydroxyacetone kinase
JM956_RS20300	COG1302	Protein conserved in bacteria
JM956_RS20315	COG1564	THIamine pyrophosphokinase
JM956_RS20320	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JM956_RS20330	COG0515	serine threonine protein kinase
JM956_RS20330	COG2815	serine threonine protein kinase
JM956_RS20335	COG0631	protein serine/threonine phosphatase activity
JM956_RS20345	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JM956_RS20345	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JM956_RS20360	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JM956_RS20365	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JM956_RS20385	COG1561	YicC-like family, N-terminal region
JM956_RS20390	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JM956_RS20405	COG0006	proline dipeptidase activity
JM956_RS20420	COG3069	C4-dicarboxylate transmembrane transporter activity
JM956_RS20480	COG0564	pseudouridine synthase activity
JM956_RS20500	COG3599	regulation of cell shape
JM956_RS20505	COG2302	S4 RNA-binding domain
JM956_RS20510	COG0762	integral membrane protein
JM956_RS20520	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JM956_RS20530	COG1873	PFAM PRC-barrel domain
JM956_RS20535	COG1191	sigma factor activity
JM956_RS20540	COG1191	sigma factor activity
JM956_RS20550	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JM956_RS20555	COG0849	cell division
JM956_RS20575	COG0772	Belongs to the SEDS family
JM956_RS20595	COG0768	penicillin binding
JM956_RS20600	COG0768	penicillin binding
JM956_RS20620	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JM956_RS20635	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JM956_RS20640	COG1399	metal-binding, possibly nucleic acid-binding protein
JM956_RS20650	COG3480	Lon protease (S16) C-terminal proteolytic domain
JM956_RS20655	COG1752	Esterase of the alpha-beta hydrolase superfamily
JM956_RS20660	COG3314	Sporulation integral membrane protein YlbJ
JM956_RS20670	COG0742	ribosomal rna small subunit methyltransferase
JM956_RS20685	COG3679	Belongs to the UPF0342 family
JM956_RS20690	COG0406	alpha-ribazole phosphatase activity
JM956_RS20705	COG2340	Cysteine-rich secretory protein family
JM956_RS20720	COG3336	cytochrome c oxidase
JM956_RS20755	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JM956_RS20760	COG0772	Belongs to the SEDS family
JM956_RS20770	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JM956_RS20775	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JM956_RS20785	COG4896	Protein conserved in bacteria
JM956_RS20800	COG1217	gtp-binding protein TYPA
JM956_RS20810	COG0483	inositol monophosphate 1-phosphatase activity
JM956_RS20830	COG1982	Orn Lys Arg decarboxylase major
JM956_RS20880	COG0022	dehydrogenase e1 component
JM956_RS20885	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JM956_RS20900	COG0561	phosphatase activity
JM956_RS20910	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JM956_RS20915	COG0569	domain protein
JM956_RS20935	COG0583	DNA-binding transcription factor activity
JM956_RS20940	COG0517	IMP dehydrogenase activity
JM956_RS20950	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
JM956_RS20960	COG4703	Protein of unknown function (DUF1797)
JM956_RS20975	COG2200	EAL domain
JM956_RS20980	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS20985	COG1408	metallophosphoesterase
JM956_RS21030	COG2814	Major facilitator Superfamily
JM956_RS21050	COG3209	COG3209 Rhs family protein
JM956_RS21060	COG2205	protein histidine kinase activity
JM956_RS21070	COG0436	Aminotransferase
JM956_RS21075	COG1609	Transcriptional regulator
JM956_RS21080	COG3833	ABC-type maltose transport systems, permease component
JM956_RS21085	COG1175	transmembrane transport
JM956_RS21090	COG2182	Extracellular solute-binding protein
JM956_RS21100	COG0366	Alpha amylase catalytic
JM956_RS21105	COG3842	ATPase activity
JM956_RS21145	COG0183	Belongs to the thiolase family
JM956_RS21175	COG1695	Transcriptional regulator
JM956_RS21180	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS21200	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JM956_RS21205	COG0436	Aminotransferase
JM956_RS21240	COG2084	Dehydrogenase
JM956_RS21250	COG2199	diguanylate cyclase activity
JM956_RS21255	COG0778	Nitroreductase
JM956_RS21280	COG1263	PTS System
JM956_RS21280	COG2190	(PTS) system
JM956_RS21280	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM956_RS21285	COG3711	transcriptional antiterminator
JM956_RS21295	COG2188	Transcriptional regulator
JM956_RS21305	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JM956_RS21330	COG1547	Domain of unknown function (DUF309)
JM956_RS21340	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JM956_RS21345	COG4086	secreted protein
JM956_RS21350	COG0561	phosphatase activity
JM956_RS21355	COG0697	spore germination
JM956_RS21370	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JM956_RS21395	COG0733	neurotransmitter:sodium symporter activity
JM956_RS21415	COG1686	Belongs to the peptidase S11 family
JM956_RS21420	COG1725	Transcriptional regulator
JM956_RS21425	COG1131	(ABC) transporter
JM956_RS21445	COG1846	Transcriptional regulator
JM956_RS21460	COG0598	Magnesium transport protein CorA
JM956_RS21485	COG4974	Belongs to the 'phage' integrase family
JM956_RS21495	COG0735	belongs to the Fur family
JM956_RS21500	COG1300	Membrane
JM956_RS21520	COG0667	Aldo Keto reductase
JM956_RS21525	COG0656	L-ascorbic acid biosynthetic process
JM956_RS21530	COG0456	acetyltransferase
JM956_RS21530	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JM956_RS21540	COG0737	Belongs to the 5'-nucleotidase family
JM956_RS21540	COG1525	nuclease
JM956_RS21540	COG4085	toxin activity
JM956_RS21550	COG0596	Alpha beta hydrolase
JM956_RS21555	COG2056	Na+-H+ antiporter family
JM956_RS21560	COG1609	Transcriptional regulator
JM956_RS21565	COG0456	acetyltransferase
JM956_RS21570	COG1073	alpha beta
JM956_RS21585	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JM956_RS21585	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JM956_RS21590	COG0307	riboflavin synthase, alpha
JM956_RS21620	COG1073	alpha beta
JM956_RS21620	COG2226	methyltransferase
JM956_RS21635	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JM956_RS21645	COG1757	Na H antiporter
JM956_RS21650	COG0737	Belongs to the 5'-nucleotidase family
JM956_RS21660	COG1522	sequence-specific DNA binding
JM956_RS21705	COG0300	oxidoreductase activity
JM956_RS21710	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM956_RS21715	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JM956_RS21720	COG1760	l-serine dehydratase
JM956_RS21725	COG1760	l-serine dehydratase
JM956_RS21760	COG2195	Cleaves the N-terminal amino acid of tripeptides
JM956_RS21765	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS21780	COG1376	ErfK ybiS ycfS ynhG family protein
JM956_RS21785	COG4129	membrane
JM956_RS21790	COG1126	abc transporter atp-binding protein
JM956_RS21795	COG0765	amino acid transport
JM956_RS21800	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JM956_RS21820	COG2323	membrane
JM956_RS21825	COG0772	Belongs to the SEDS family
JM956_RS21835	COG0508	dehydrogenase complex catalyzes the overall conversion of
JM956_RS21840	COG0022	dehydrogenase e1 component
JM956_RS21845	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JM956_RS21850	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JM956_RS21865	COG0280	phosphate acetyltransferase
JM956_RS21870	COG3829	transcription factor binding
JM956_RS21870	COG3290	protein histidine kinase activity
JM956_RS21880	COG0584	glycerophosphoryl diester phosphodiesterase
JM956_RS21885	COG3093	addiction module antidote protein HigA
JM956_RS21905	COG0750	zinc metalloprotease
JM956_RS21910	COG0497	DNA recombination
JM956_RS21920	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JM956_RS21930	COG0142	geranyltranstransferase activity
JM956_RS21955	COG1302	Protein conserved in bacteria
JM956_RS21960	COG0439	Biotin carboxylase
JM956_RS21965	COG0511	ligase activity, forming carbon-carbon bonds
JM956_RS22010	COG3854	ATPases associated with a variety of cellular activities
JM956_RS22035	COG0006	proline dipeptidase activity
JM956_RS22050	COG3872	metal-dependent enzyme
JM956_RS22060	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JM956_RS22095	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM956_RS22105	COG1609	Transcriptional regulator
JM956_RS22115	COG2076	Multidrug Resistance protein
JM956_RS22120	COG2076	Multidrug Resistance protein
JM956_RS22155	COG1725	Transcriptional regulator
JM956_RS22185	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JM956_RS22245	COG1459	type II secretion system
JM956_RS22250	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JM956_RS22305	COG0646	methionine synthase
JM956_RS22305	COG1410	methionine synthase
JM956_RS22310	COG0646	methionine synthase
JM956_RS22310	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
JM956_RS22315	COG0626	cystathionine gamma-synthase activity
JM956_RS22320	COG0626	cystathionine gamma-synthase activity
JM956_RS22340	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM956_RS22350	COG1940	carbohydrate kinase activity
JM956_RS22355	COG4483	Protein conserved in bacteria
JM956_RS22360	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JM956_RS22365	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JM956_RS22370	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JM956_RS22375	COG0704	Plays a role in the regulation of phosphate uptake
JM956_RS22385	COG0573	inorganic phosphate transmembrane transporter activity
JM956_RS22390	COG0573	inorganic phosphate transmembrane transporter activity
JM956_RS22395	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JM956_RS22400	COG0768	penicillin binding
JM956_RS22405	COG0477	Major facilitator Superfamily
JM956_RS22410	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JM956_RS22420	COG5521	maltodextrose utilization protein MalA
JM956_RS22435	COG0735	belongs to the Fur family
JM956_RS22440	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JM956_RS22445	COG1121	(ABC) transporter
JM956_RS22450	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM956_RS22480	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JM956_RS22485	COG2384	SAM-dependent methyltransferase
JM956_RS22495	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JM956_RS22500	COG0358	DNA primase activity
JM956_RS22510	COG0517	IMP dehydrogenase activity
JM956_RS22525	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JM956_RS22530	COG0295	cytidine deaminase activity
JM956_RS22535	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JM956_RS22545	COG1480	7TM receptor with intracellular HD hydrolase
JM956_RS22550	COG1702	phosphate starvation-inducible protein PhoH
JM956_RS22565	COG1610	YqeY-like protein
JM956_RS22570	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JM956_RS22575	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JM956_RS22580	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JM956_RS22610	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JM956_RS22615	COG1733	regulation of RNA biosynthetic process
JM956_RS22640	COG1466	dna polymerase III delta subunit
JM956_RS22650	COG2333	competence protein COMEC
JM956_RS22650	COG0658	competence protein
JM956_RS22655	COG2131	deaminase
JM956_RS22660	COG1555	photosystem II stabilization
JM956_RS22660	COG1596	polysaccharide export
JM956_RS22665	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JM956_RS22670	COG2226	methyltransferase
JM956_RS22675	COG0799	negative regulation of ribosome biogenesis
JM956_RS22680	COG1713	HD superfamily hydrolase involved in NAD metabolism
JM956_RS22690	COG1534	Rna-binding protein
JM956_RS22700	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JM956_RS22705	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
JM956_RS22730	COG1595	DNA-templated transcription, initiation
JM956_RS22740	COG0778	Nitroreductase
JM956_RS22745	COG2357	RelA SpoT domain protein
JM956_RS22755	COG1785	Belongs to the alkaline phosphatase family
JM956_RS22765	COG2267	carboxylic ester hydrolase activity
JM956_RS22800	COG1404	Belongs to the peptidase S8 family
JM956_RS22805	COG3186	Phenylalanine-4-hydroxylase
JM956_RS22815	COG2514	catechol 2,3-dioxygenase activity
JM956_RS22820	COG2259	Doxx family
JM956_RS22860	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM956_RS22870	COG1012	belongs to the aldehyde dehydrogenase family
JM956_RS22870	COG1454	alcohol dehydrogenase
JM956_RS22875	COG0626	cystathionine gamma-synthase activity
JM956_RS22880	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JM956_RS22905	COG0768	penicillin binding
JM956_RS22925	COG0826	peptidase U32
JM956_RS22930	COG0826	peptidase U32
JM956_RS22935	COG4122	O-methyltransferase activity
JM956_RS22940	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JM956_RS22970	COG0628	permease
JM956_RS22990	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JM956_RS23005	COG1104	cysteine desulfurase activity
JM956_RS23010	COG1959	2 iron, 2 sulfur cluster binding
JM956_RS23015	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JM956_RS23025	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JM956_RS23055	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JM956_RS23065	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JM956_RS23065	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
JM956_RS23070	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JM956_RS23075	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JM956_RS23075	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JM956_RS23085	COG2244	polysaccharide biosynthetic process
JM956_RS23090	COG2323	membrane
JM956_RS23100	COG1862	Preprotein translocase
JM956_RS23130	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JM956_RS23160	COG0157	Belongs to the NadC ModD family
JM956_RS23165	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JM956_RS23170	COG1104	cysteine desulfurase activity
JM956_RS23175	COG1827	regulation of RNA biosynthetic process
JM956_RS23180	COG2258	MOSC domain
JM956_RS23190	COG0077	Prephenate dehydratase
JM956_RS23195	COG0577	efflux transmembrane transporter activity
JM956_RS23200	COG0577	efflux transmembrane transporter activity
JM956_RS23205	COG1136	(ABC) transporter
JM956_RS23210	COG5002	protein histidine kinase activity
JM956_RS23215	COG0745	RESPONSE REGULATOR receiver
JM956_RS23225	COG3290	protein histidine kinase activity
JM956_RS23235	COG2868	ribosomal protein
JM956_RS23245	COG1530	ribonuclease E activity
JM956_RS23250	COG1994	Peptidase M50
JM956_RS23255	COG0739	heme binding
JM956_RS23260	COG2894	cell division
JM956_RS23280	COG1077	Cell shape determining protein MreB Mrl
JM956_RS23300	COG0285	dihydrofolate synthase activity
JM956_RS23315	COG1388	LysM domain
JM956_RS23325	COG0113	porphobilinogen synthase activity
JM956_RS23330	COG1587	Uroporphyrinogen-III synthase
JM956_RS23340	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JM956_RS23350	COG1846	Transcriptional regulator
JM956_RS23355	COG1764	response to oxidative stress
JM956_RS23370	COG0470	DNA polymerase III
JM956_RS23370	COG1067	ATP-dependent peptidase activity
JM956_RS23420	COG0622	Phosphoesterase
JM956_RS23435	COG5401	PFAM Sporulation and spore germination
JM956_RS23455	COG1309	transcriptional regulator
JM956_RS23470	COG2197	response regulator
JM956_RS23475	COG2233	PERMEase
JM956_RS23480	COG0402	S-adenosylhomocysteine deaminase activity
JM956_RS23485	COG1983	PspC domain protein
JM956_RS23490	COG1396	sequence-specific DNA binding
JM956_RS23495	COG0697	spore germination
JM956_RS23505	COG1959	2 iron, 2 sulfur cluster binding
JM956_RS23510	COG1668	transmembrane transport
JM956_RS23515	COG4152	abc transporter atp-binding protein
JM956_RS23520	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
JM956_RS23525	COG1360	Flagellar Motor Protein
JM956_RS23530	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JM956_RS23535	COG1876	peptidase activity
JM956_RS23540	COG0824	Thioesterase
JM956_RS23545	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JM956_RS23550	COG1053	succinate dehydrogenase
JM956_RS23555	COG2009	succinate dehydrogenase
JM956_RS23560	COG1719	4-vinyl reductase, 4VR
JM956_RS23570	COG3118	belongs to the thioredoxin family
JM956_RS23575	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JM956_RS23580	COG2086	electron transfer activity
JM956_RS23585	COG1024	Enoyl-CoA hydratase
JM956_RS23590	COG1309	transcriptional regulator
JM956_RS23595	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS23615	COG2318	DinB family
JM956_RS23645	COG1131	(ABC) transporter
JM956_RS23650	COG2205	protein histidine kinase activity
JM956_RS23655	COG0745	RESPONSE REGULATOR receiver
JM956_RS23665	COG4895	conserved protein (DUF2196)
JM956_RS23670	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JM956_RS23685	COG4509	Sortase family
JM956_RS23690	COG1120	ATPase activity
JM956_RS23705	COG5386	Cell surface protein
JM956_RS23715	COG5386	Cell surface protein
JM956_RS23720	COG1114	Component of the transport system for branched-chain amino acids
JM956_RS23725	COG1187	pseudouridine synthase activity
JM956_RS23735	COG1796	DNA polymerase
JM956_RS23735	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JM956_RS23740	COG1286	toxin biosynthetic process
JM956_RS23785	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JM956_RS23795	COG1418	mRNA catabolic process
JM956_RS23815	COG2814	Major facilitator Superfamily
JM956_RS23820	COG1566	PFAM secretion protein HlyD family protein
JM956_RS23825	COG1309	transcriptional regulator
JM956_RS23830	COG1363	Peptidase, m42
JM956_RS23855	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JM956_RS23870	COG1484	DNA-dependent DNA replication
JM956_RS23875	COG3611	Membrane attachment protein
JM956_RS23885	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
JM956_RS23890	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JM956_RS23900	COG1971	Probably functions as a manganese efflux pump
JM956_RS23910	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JM956_RS23910	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JM956_RS23915	COG5002	protein histidine kinase activity
JM956_RS23920	COG0745	RESPONSE REGULATOR receiver
JM956_RS23940	COG0538	isocitrate dehydrogenase activity
JM956_RS23945	COG0372	Belongs to the citrate synthase family
JM956_RS23955	COG0628	permease
JM956_RS23960	COG3030	protein affecting phage T7 exclusion by the F plasmid
JM956_RS23985	COG1725	Transcriptional regulator
JM956_RS23990	COG0281	malic enzyme
JM956_RS23995	COG0587	DNA-directed DNA polymerase activity
JM956_RS24010	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JM956_RS24025	COG4109	DRTGG domain
JM956_RS24040	COG0006	proline dipeptidase activity
JM956_RS24085	COG0662	Cupin 2, conserved barrel domain protein
JM956_RS24100	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS24105	COG0589	response to stress
JM956_RS24145	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM956_RS24170	COG0827	DNA restriction-modification system
JM956_RS24175	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JM956_RS24180	COG3874	Sporulation protein YtfJ
JM956_RS24195	COG1574	metal-dependent hydrolase with the TIM-barrel fold
JM956_RS24205	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JM956_RS24220	COG1104	cysteine desulfurase activity
JM956_RS24230	COG0583	DNA-binding transcription factor activity
JM956_RS24235	COG0697	spore germination
JM956_RS24240	COG1309	transcriptional regulator
JM956_RS24245	COG1956	GAF domain-containing protein
JM956_RS24250	COG0626	cystathionine gamma-synthase activity
JM956_RS24335	COG1595	DNA-templated transcription, initiation
JM956_RS24345	COG0110	maltose O-acetyltransferase activity
JM956_RS24350	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JM956_RS24355	COG0454	-acetyltransferase
JM956_RS24360	COG0517	IMP dehydrogenase activity
JM956_RS24365	COG0123	including yeast histone deacetylase and acetoin utilization protein
JM956_RS24370	COG2267	carboxylic ester hydrolase activity
JM956_RS24380	COG0745	RESPONSE REGULATOR receiver
JM956_RS24390	COG0666	response to abiotic stimulus
JM956_RS24420	COG1609	Transcriptional regulator
JM956_RS24425	COG1605	Chorismate mutase
JM956_RS24425	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JM956_RS24430	COG4851	CamS sex pheromone cAM373 precursor
JM956_RS24435	COG3118	belongs to the thioredoxin family
JM956_RS24445	COG2309	aminopeptidase activity
JM956_RS24460	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS24475	COG1674	ftsk spoiiie
JM956_RS24480	COG0860	N-Acetylmuramoyl-L-alanine amidase
JM956_RS24480	COG1388	LysM domain
JM956_RS24490	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JM956_RS24500	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JM956_RS24505	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
JM956_RS24510	COG1363	Peptidase, m42
JM956_RS24520	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM956_RS24535	COG0510	thiamine kinase activity
JM956_RS24540	COG1523	belongs to the glycosyl hydrolase 13 family
JM956_RS24550	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JM956_RS24555	COG1349	DNA-binding transcription factor activity
JM956_RS24560	COG1187	pseudouridine synthase activity
JM956_RS24565	COG2244	polysaccharide biosynthetic process
JM956_RS24570	COG2081	HI0933 family
JM956_RS24575	COG2814	Major facilitator Superfamily
JM956_RS24585	COG3832	glyoxalase III activity
JM956_RS24605	COG1329	Transcriptional regulator
JM956_RS24630	COG0314	molybdopterin synthase activity
JM956_RS24635	COG1763	Mo-molybdopterin cofactor biosynthetic process
JM956_RS24640	COG0303	'Molybdopterin
JM956_RS24650	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JM956_RS24655	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JM956_RS24675	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM956_RS24685	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JM956_RS24725	COG2814	Major facilitator Superfamily
JM956_RS24730	COG0475	glutathione-regulated potassium exporter activity
JM956_RS24735	COG0490	domain, Protein
JM956_RS24740	COG0582	viral genome integration into host DNA
JM956_RS24750	COG1136	(ABC) transporter
JM956_RS24770	COG1242	4 iron, 4 sulfur cluster binding
JM956_RS24775	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JM956_RS24780	COG1794	racemase activity, acting on amino acids and derivatives
JM956_RS24800	COG2267	carboxylic ester hydrolase activity
JM956_RS24805	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JM956_RS24810	COG0671	phosphoesterase, PA-phosphatase related
JM956_RS24815	COG0438	transferase activity, transferring glycosyl groups
JM956_RS24840	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS24885	COG5002	protein histidine kinase activity
JM956_RS24890	COG3852	Histidine kinase
JM956_RS24895	COG2267	carboxylic ester hydrolase activity
JM956_RS24900	COG1368	sulfuric ester hydrolase activity
JM956_RS24910	COG4895	conserved protein (DUF2196)
JM956_RS24925	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JM956_RS24930	COG1116	anion transmembrane transporter activity
JM956_RS24935	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JM956_RS24960	COG0494	nUDIX hydrolase
JM956_RS24990	COG2076	Multidrug Resistance protein
JM956_RS24995	COG2076	Multidrug Resistance protein
JM956_RS25000	COG0789	Transcriptional regulator
JM956_RS25005	COG1854	S-ribosylhomocysteine lyase activity
JM956_RS25015	COG0288	reversible hydration of carbon dioxide
JM956_RS25020	COG1271	oxidase subunit
JM956_RS25025	COG1294	oxidase, subunit
JM956_RS25040	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM956_RS25060	COG1842	Phage shock protein A
JM956_RS25090	COG5002	protein histidine kinase activity
JM956_RS25095	COG0745	RESPONSE REGULATOR receiver
JM956_RS25120	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JM956_RS25125	COG1597	lipid kinase activity
JM956_RS25140	COG3344	reverse transcriptase
JM956_RS25155	COG0586	Pfam SNARE associated Golgi protein
JM956_RS25165	COG0577	efflux transmembrane transporter activity
JM956_RS25170	COG1136	(ABC) transporter
JM956_RS25175	COG3708	Transcriptional regulator
JM956_RS25175	COG2207	Transcriptional regulator
JM956_RS25185	COG1131	(ABC) transporter
JM956_RS25190	COG5658	integral membrane protein
JM956_RS25195	COG0640	Transcriptional regulator
JM956_RS25205	COG0745	RESPONSE REGULATOR receiver
JM956_RS25210	COG2205	protein histidine kinase activity
JM956_RS25215	COG0577	efflux transmembrane transporter activity
JM956_RS25220	COG0577	efflux transmembrane transporter activity
JM956_RS25225	COG1136	(ABC) transporter
JM956_RS25230	COG0577	efflux transmembrane transporter activity
JM956_RS25245	COG2188	Transcriptional regulator
JM956_RS25265	COG3964	amidohydrolase
JM956_RS25285	COG4948	Mandelate Racemase Muconate Lactonizing
JM956_RS25295	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JM956_RS25300	COG0596	Alpha beta hydrolase
JM956_RS25310	COG1169	isochorismate synthase
JM956_RS25315	COG1575	Belongs to the MenA family. Type 1 subfamily
JM956_RS25320	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JM956_RS25350	COG0058	SHG alpha-glucan phosphorylase activity
JM956_RS25360	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JM956_RS25480	COG0544	peptidyl-prolyl cis-trans isomerase activity
JM956_RS25515	COG1285	pathogenesis
JM956_RS25520	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JM956_RS25535	COG2155	Conserved Protein
JM956_RS25540	COG1098	S1 RNA binding domain
JM956_RS25545	COG0436	Aminotransferase
JM956_RS25550	COG1522	sequence-specific DNA binding
JM956_RS25555	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JM956_RS25560	COG2267	carboxylic ester hydrolase activity
JM956_RS25570	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JM956_RS25590	COG5018	Exonuclease
JM956_RS25595	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JM956_RS25615	COG2050	protein possibly involved in aromatic compounds catabolism
JM956_RS25625	COG1268	BioY protein
JM956_RS25630	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JM956_RS25635	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JM956_RS25655	COG2076	Multidrug Resistance protein
JM956_RS25660	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JM956_RS25670	COG3584	3D domain protein
JM956_RS25685	COG1252	NADH dehydrogenase
JM956_RS25700	COG3708	Transcriptional regulator
JM956_RS25715	COG1683	Conserved Protein
JM956_RS25775	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JM956_RS25810	COG0316	Belongs to the HesB IscA family
JM956_RS25825	COG1252	NADH dehydrogenase
JM956_RS25835	COG2274	protein secretion by the type I secretion system
JM956_RS25840	COG0390	transport system, permease component
JM956_RS25845	COG2824	Alkylphosphonate utilization operon protein PhnA
JM956_RS25890	COG4837	Protein of unknown function (DUF1462)
JM956_RS25895	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
JM956_RS25905	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JM956_RS25910	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JM956_RS25920	COG2249	NAD(P)H dehydrogenase (quinone) activity
JM956_RS25925	COG0647	UMP catabolic process
JM956_RS25935	COG2445	Protein of unknown function DUF86
JM956_RS25940	COG1494	fructose-1,6-bisphosphatase
JM956_RS25955	COG4470	Protein conserved in bacteria
JM956_RS25965	COG0789	Transcriptional regulator
JM956_RS25970	COG4377	Putative membrane peptidase family (DUF2324)
JM956_RS25995	COG0739	heme binding
JM956_RS26005	COG3377	Domain of unknown function (DUF1805)
JM956_RS26010	COG0737	Belongs to the 5'-nucleotidase family
JM956_RS26015	COG0719	Fe-S assembly protein
JM956_RS26020	COG0822	iron-sulfur transferase activity
JM956_RS26025	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JM956_RS26030	COG0719	Fe-S assembly protein
JM956_RS26035	COG0396	ATPase activity
JM956_RS26040	COG1464	Belongs to the NlpA lipoprotein family
JM956_RS26045	COG1464	Belongs to the NlpA lipoprotein family
JM956_RS26050	COG2011	ABC-type metal ion transport system permease component
JM956_RS26065	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JM956_RS26070	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JM956_RS26080	COG1393	Belongs to the ArsC family
JM956_RS26100	COG0039	L-malate dehydrogenase activity
JM956_RS26120	COG1309	transcriptional regulator
JM956_RS26125	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM956_RS26130	COG1960	acyl-CoA dehydrogenase activity
JM956_RS26135	COG0183	Belongs to the thiolase family
JM956_RS26140	COG1024	Enoyl-CoA hydratase
JM956_RS26140	COG1250	3-hydroxyacyl-CoA dehydrogenase
JM956_RS26150	COG1686	Belongs to the peptidase S11 family
JM956_RS26165	COG0011	TIGRFAM Protein of
JM956_RS26170	COG0840	transmembrane signaling receptor activity
JM956_RS26185	COG2814	Major facilitator Superfamily
JM956_RS26190	COG0531	amino acid
JM956_RS26215	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM956_RS26255	COG0586	Pfam SNARE associated Golgi protein
JM956_RS26265	COG1376	ErfK ybiS ycfS ynhG family protein
JM956_RS26270	COG0745	RESPONSE REGULATOR receiver
JM956_RS26275	COG5002	protein histidine kinase activity
JM956_RS26305	COG0840	transmembrane signaling receptor activity
JM956_RS26310	COG2151	metal-sulfur cluster biosynthetic enzyme
JM956_RS26315	COG3227	Zinc metalloprotease (Elastase)
JM956_RS26335	COG0475	glutathione-regulated potassium exporter activity
JM956_RS26340	COG0490	domain, Protein
JM956_RS26345	COG1115	amino acid carrier protein
JM956_RS26350	COG0783	Belongs to the Dps family
JM956_RS26365	COG1611	Belongs to the LOG family
JM956_RS26375	COG1528	Iron-storage protein
JM956_RS26380	COG2311	Membrane
JM956_RS26385	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM956_RS26390	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM956_RS26395	COG1115	amino acid carrier protein
JM956_RS26400	COG1115	amino acid carrier protein
JM956_RS26405	COG2910	NAD(P)H-binding
JM956_RS26420	COG0656	L-ascorbic acid biosynthetic process
JM956_RS26425	COG2814	Major facilitator Superfamily
JM956_RS26430	COG1733	regulation of RNA biosynthetic process
JM956_RS26440	COG1252	NADH dehydrogenase
JM956_RS26495	COG0488	(ABC) transporter
JM956_RS26500	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM956_RS26520	COG1335	isochorismatase
JM956_RS26525	COG1522	sequence-specific DNA binding
JM956_RS26625	COG0557	exoribonuclease II activity
JM956_RS26630	COG1647	Serine aminopeptidase, S33
JM956_RS26635	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JM956_RS26640	COG1346	cytolysis
JM956_RS26675	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JM956_RS26690	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JM956_RS26715	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JM956_RS26730	COG2323	membrane
JM956_RS26740	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JM956_RS26750	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JM956_RS26760	COG1051	belongs to the nudix hydrolase family
JM956_RS26770	COG0492	ferredoxin-NADP+ reductase activity
JM956_RS26775	COG0457	Tetratricopeptide repeat
JM956_RS26780	COG0110	maltose O-acetyltransferase activity
JM956_RS26800	COG1950	PFAM Membrane protein of
JM956_RS26810	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JM956_RS26830	COG0789	Transcriptional regulator
JM956_RS26850	COG0583	DNA-binding transcription factor activity
JM956_RS26860	COG0655	NAD(P)H dehydrogenase (quinone) activity
JM956_RS26865	COG0488	(ABC) transporter
JM956_RS26875	COG1132	(ABC) transporter
JM956_RS26880	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JM956_RS26885	COG0793	Belongs to the peptidase S41A family
JM956_RS26885	COG3409	Peptidoglycan-binding domain 1 protein
JM956_RS26890	COG2177	Part of the ABC transporter FtsEX involved in
JM956_RS26895	COG2884	Cell division ATP-binding protein ftsE
JM956_RS26915	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JM956_RS26920	COG1278	Cold shock
JM956_RS26925	COG1040	competence protein
JM956_RS26930	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
JM956_RS26935	COG0791	NLP P60 protein
JM956_RS26935	COG1388	LysM domain
JM956_RS26940	COG1733	regulation of RNA biosynthetic process
JM956_RS26945	COG1307	EDD domain protein, DegV family
JM956_RS26950	COG1739	Uncharacterized protein family UPF0029
JM956_RS26955	COG1316	TRANSCRIPTIONal
JM956_RS26960	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JM956_RS26965	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JM956_RS26970	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JM956_RS26980	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JM956_RS26980	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JM956_RS27000	COG1486	melibiose metabolic process
JM956_RS27005	COG1447	Phosphotransferase system cellobiose-specific component IIA
JM956_RS27010	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JM956_RS27020	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JM956_RS27030	COG1447	Phosphotransferase system cellobiose-specific component IIA
JM956_RS27040	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JM956_RS27045	COG1301	dicarboxylic acid transport
JM956_RS27055	COG0346	lactoylglutathione lyase activity
JM956_RS27060	COG1511	domain protein
JM956_RS27065	COG0583	DNA-binding transcription factor activity
JM956_RS27070	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JM956_RS27080	COG1271	oxidase subunit
JM956_RS27085	COG1294	oxidase, subunit
JM956_RS27095	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JM956_RS27105	COG1620	l-lactate permease
JM956_RS27115	COG2389	metal-binding protein
JM956_RS27125	COG1368	sulfuric ester hydrolase activity
JM956_RS27135	COG0791	NLP P60 protein
JM956_RS27135	COG1388	LysM domain
JM956_RS27140	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM956_RS27150	COG1215	transferase activity, transferring glycosyl groups
JM956_RS27155	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JM956_RS27160	COG3584	3D domain protein
JM956_RS27160	COG1388	LysM domain
JM956_RS27185	COG4715	Zinc finger, swim domain protein
JM956_RS27190	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JM956_RS27230	COG0577	efflux transmembrane transporter activity
JM956_RS27235	COG1136	(ABC) transporter
JM956_RS27260	COG5002	protein histidine kinase activity
JM956_RS27265	COG0745	RESPONSE REGULATOR receiver
JM956_RS27275	COG1316	TRANSCRIPTIONal
JM956_RS27285	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JM956_RS27300	COG1442	glycosyl transferase family 8
JM956_RS27300	COG1216	Glycosyl transferase, family 2
JM956_RS27315	COG0438	transferase activity, transferring glycosyl groups
JM956_RS27330	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JM956_RS27335	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JM956_RS27340	COG1086	Polysaccharide biosynthesis protein
JM956_RS27345	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JM956_RS27350	COG4464	protein tyrosine phosphatase activity
JM956_RS27355	COG0489	protein tyrosine kinase activity
JM956_RS27360	COG3944	biosynthesis protein
JM956_RS27370	COG0489	protein tyrosine kinase activity
JM956_RS27385	COG1609	Transcriptional regulator
JM956_RS27395	COG0739	heme binding
JM956_RS27410	COG3279	Response regulator of the LytR AlgR family
JM956_RS27415	COG2385	sporulation resulting in formation of a cellular spore
JM956_RS27430	COG4836	Membrane
JM956_RS27435	COG1007	ATP synthesis coupled electron transport
JM956_RS27440	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JM956_RS27445	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JM956_RS27455	COG0839	Belongs to the complex I subunit 6 family
JM956_RS27475	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JM956_RS27490	COG3300	MHYT domain
JM956_RS27490	COG5001	Diguanylate cyclase
JM956_RS27540	COG0356	it plays a direct role in the translocation of protons across the membrane
JM956_RS27575	COG0698	ribose 5-phosphate isomerase
JM956_RS27590	COG2259	Doxx family
JM956_RS27595	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JM956_RS27610	COG0009	L-threonylcarbamoyladenylate synthase
JM956_RS27645	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JM956_RS27650	COG1494	fructose-1,6-bisphosphatase
JM956_RS27670	COG4821	SIS domain
JM956_RS27680	COG3343	RNA polymerase activity
JM956_RS27690	COG1960	acyl-CoA dehydrogenase activity
JM956_RS27695	COG1960	acyl-CoA dehydrogenase activity
JM956_RS27700	COG1250	3-hydroxyacyl-CoA dehydrogenase
JM956_RS27705	COG0183	Belongs to the thiolase family
JM956_RS27710	COG0247	lactate metabolic process
JM956_RS27710	COG2181	nitrate reductase activity
JM956_RS27715	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JM956_RS27725	COG5001	Diguanylate cyclase
JM956_RS27725	COG3300	MHYT domain
JM956_RS27740	COG3227	Zinc metalloprotease (Elastase)
JM956_RS27745	COG2197	response regulator
JM956_RS27750	COG4585	Histidine kinase
JM956_RS27755	COG0842	Transport permease protein
JM956_RS27760	COG1131	(ABC) transporter
JM956_RS27765	COG0024	Methionine aminopeptidase
JM956_RS27775	COG2234	aminopeptidase activity
JM956_RS27795	COG1595	DNA-templated transcription, initiation
JM956_RS27805	COG4506	Protein conserved in bacteria
JM956_RS27810	COG1619	proteins homologs of microcin C7 resistance protein MccF
JM956_RS27830	COG0010	Belongs to the arginase family
JM956_RS27840	COG2814	Major facilitator Superfamily
JM956_RS27845	COG0789	Transcriptional regulator
JM956_RS27850	COG0584	glycerophosphoryl diester phosphodiesterase
JM956_RS27855	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JM956_RS27865	COG1994	Peptidase M50
JM956_RS27875	COG1078	dGTPase activity
JM956_RS27880	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM956_RS27885	COG1120	ATPase activity
JM956_RS27890	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM956_RS27895	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM956_RS27915	COG0280	phosphate acetyltransferase
JM956_RS27930	COG3773	Cell wall hydrolase
JM956_RS27940	COG2363	Small membrane protein
JM956_RS27950	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JM956_RS27955	COG2233	PERMEase
JM956_RS27960	COG0561	phosphatase activity
JM956_RS27965	COG2814	Major facilitator Superfamily
JM956_RS27975	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JM956_RS27980	COG1131	(ABC) transporter
JM956_RS27985	COG2755	lipolytic protein G-D-S-L family
JM956_RS27990	COG1609	Transcriptional regulator
JM956_RS28000	COG0460	homoserine dehydrogenase
JM956_RS28010	COG2873	o-acetylhomoserine
JM956_RS28015	COG1011	Hydrolase
JM956_RS28020	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JM956_RS28030	COG2197	response regulator
JM956_RS28035	COG4585	Histidine kinase
JM956_RS28035	COG2203	Gaf domain
JM956_RS28040	COG0351	phosphomethylpyrimidine kinase
JM956_RS28045	COG3706	GGDEF domain
JM956_RS28050	COG2879	small protein
JM956_RS28055	COG1966	Carbon starvation protein
JM956_RS28060	COG3279	Response regulator of the LytR AlgR family
JM956_RS28065	COG0477	Major facilitator Superfamily
JM956_RS28075	COG0438	transferase activity, transferring glycosyl groups
JM956_RS28090	COG0840	transmembrane signaling receptor activity
JM956_RS28100	COG1607	acyl-coa hydrolase
JM956_RS28105	COG1216	Glycosyl transferase, family 2
JM956_RS28115	COG1216	Glycosyl transferase, family 2
JM956_RS28125	COG4485	Bacterial membrane protein, YfhO
JM956_RS28130	COG0463	Glycosyl transferase, family 2
JM956_RS28135	COG0488	(ABC) transporter
JM956_RS28140	COG1309	transcriptional regulator
JM956_RS28145	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JM956_RS28150	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JM956_RS28150	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JM956_RS28155	COG0628	permease
JM956_RS28175	COG3275	phosphorelay sensor kinase activity
JM956_RS28180	COG2814	Major facilitator Superfamily
JM956_RS28185	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JM956_RS28190	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
JM956_RS28210	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JM956_RS28215	COG1272	protein, Hemolysin III
JM956_RS28250	COG5002	protein histidine kinase activity
JM956_RS28265	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JM956_RS28270	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JM956_RS28275	COG4853	Protein conserved in bacteria
JM956_RS28285	COG5002	protein histidine kinase activity
JM956_RS28290	COG0745	RESPONSE REGULATOR receiver
JM956_RS28320	COG0305	Participates in initiation and elongation during chromosome replication
JM956_RS28330	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
JM956_RS28335	COG4241	membrane
JM956_RS28355	COG0012	GTP binding
JM956_RS28360	COG4481	Protein conserved in bacteria
JM956_RS28365	COG0668	transmembrane transport
JM956_RS28375	COG1475	DNA binding
JM956_RS28380	COG1192	Involved in chromosome partitioning
JM956_RS28405	COG1847	R3H domain protein
JM956_RS28420	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JM956_RS28445	COG1725	Transcriptional regulator
JM956_RS28450	COG1131	(ABC) transporter
JM956_RS28465	COG1278	Cold shock
JM956_RS28485	COG1329	Transcriptional regulator
JM956_RS28515	COG2311	Membrane
JM956_RS28600	COG0584	glycerophosphoryl diester phosphodiesterase
JM956_RS28605	COG0789	Transcriptional regulator
JM956_RS28645	COG2311	Membrane
JM956_RS28660	COG1136	(ABC) transporter
JM956_RS28750	COG1802	Transcriptional regulator
JM956_RS28755	COG0697	spore germination
JM956_RS28800	COG2002	toxin-antitoxin pair type II binding
JM956_RS28810	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
JM956_RS28880	COG1819	glycosyl
JM956_RS28905	COG0840	transmembrane signaling receptor activity
JM956_RS28940	COG1819	glycosyl
JM956_RS28945	COG0596	Alpha beta hydrolase
JM956_RS28950	COG0596	Alpha beta hydrolase
JM956_RS28965	COG2801	Transposase and inactivated derivatives
JM956_RS29010	COG4990	cell redox homeostasis
JM956_RS29025	COG3647	Membrane
JM956_RS29030	COG0671	phosphoesterase, PA-phosphatase related
JM956_RS29045	COG2323	membrane
JM956_RS29080	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JM956_RS29085	COG0438	transferase activity, transferring glycosyl groups
JM956_RS29090	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JM956_RS29105	COG0438	transferase activity, transferring glycosyl groups
JM956_RS29110	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JM956_RS29115	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JM956_RS29120	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JM956_RS29265	COG0463	Glycosyl transferase, family 2
JM956_RS29265	COG0457	Tetratricopeptide repeat
JM956_RS29295	COG3104	oligopeptide transport
JM956_RS29325	COG1280	lysine exporter protein (LysE YggA)
JM956_RS29335	COG1278	Cold shock
JM956_RS29375	COG1819	glycosyl
JM956_RS29385	COG0803	Belongs to the bacterial solute-binding protein 9 family
JM956_RS29385	COG3443	Belongs to the bacterial solute-binding protein 9 family
JM956_RS29410	COG1725	Transcriptional regulator
JM956_RS29415	COG1131	(ABC) transporter
JM956_RS29440	COG0531	amino acid
JM956_RS29445	COG1522	sequence-specific DNA binding
JM956_RS29450	COG1760	l-serine dehydratase
JM956_RS29455	COG1760	l-serine dehydratase
JM956_RS29460	COG0814	amino acid
JM956_RS29475	COG1309	transcriptional regulator
JM956_RS29480	COG2814	Major facilitator Superfamily
JM956_RS29485	COG2184	nucleotidyltransferase activity
JM956_RS29505	COG0534	Mate efflux family protein
JM956_RS29510	COG0723	plastoquinol--plastocyanin reductase activity
JM956_RS29510	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JM956_RS29525	COG0531	amino acid
JM956_RS29550	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JM956_RS29555	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM956_RS29560	COG0772	Belongs to the SEDS family
JM956_RS29565	COG2239	Acts as a magnesium transporter
JM956_RS29575	COG2814	Major facilitator Superfamily
JM956_RS29580	COG0583	DNA-binding transcription factor activity
JM956_RS29595	COG0156	8-amino-7-oxononanoate synthase activity
JM956_RS29650	COG3591	Belongs to the peptidase S1B family
JM956_RS29650	COG1864	DNA RNA non-specific endonuclease
JM956_RS29675	COG3486	L-lysine 6-monooxygenase (NADPH) activity
JM956_RS29680	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JM956_RS29690	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JM956_RS29705	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JM956_RS29705	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JM956_RS29710	COG0527	aspartate kinase activity
JM956_RS29725	COG0745	RESPONSE REGULATOR receiver
JM956_RS29730	COG2169	Transcriptional regulator
JM956_RS29735	COG4974	Belongs to the 'phage' integrase family
JM956_RS29755	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM956_RS29760	COG1252	NADH dehydrogenase
JM956_RS29765	COG0535	radical SAM domain protein
JM956_RS29775	COG0823	Involved in the tonB-independent uptake of proteins
JM956_RS29780	COG3397	chitin binding
JM956_RS29790	COG0697	spore germination
JM956_RS29840	COG0457	Tetratricopeptide repeat
JM956_RS29880	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JM956_RS29910	COG3409	Peptidoglycan-binding domain 1 protein
JM956_RS29910	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM956_RS29945	COG1475	DNA binding
JM956_RS29965	COG0738	Major facilitator superfamily
JM956_RS29975	COG0561	phosphatase activity
JM956_RS29990	COG1609	Transcriptional regulator
JM956_RS30025	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JM956_RS30030	COG3321	synthase
JM956_RS30030	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JM956_RS30030	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS30030	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS30030	COG0300	oxidoreductase activity
JM956_RS30045	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JM956_RS30050	COG1250	3-hydroxyacyl-CoA dehydrogenase
JM956_RS30065	COG1960	acyl-CoA dehydrogenase activity
JM956_RS30085	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS30085	COG3321	synthase
JM956_RS30085	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JM956_RS30085	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS30085	COG0300	oxidoreductase activity
JM956_RS30085	COG3321	synthase
JM956_RS30085	COG0300	oxidoreductase activity
JM956_RS30085	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS30085	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS30085	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JM956_RS30110	COG0671	phosphoesterase, PA-phosphatase related
JM956_RS30130	COG0463	Glycosyl transferase, family 2
JM956_RS30145	COG2249	NAD(P)H dehydrogenase (quinone) activity
JM956_RS30155	COG0789	Transcriptional regulator
JM956_RS30160	COG5504	Zn-dependent protease
JM956_RS30175	COG0667	Aldo Keto reductase
JM956_RS30210	COG4641	Protein conserved in bacteria
JM956_RS30215	COG2089	acid synthase
JM956_RS30230	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
JM956_RS30235	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JM956_RS30240	COG1088	dTDP-glucose 4,6-dehydratase activity
JM956_RS30245	COG1086	Polysaccharide biosynthesis protein
JM956_RS30250	COG0463	Glycosyl transferase, family 2
JM956_RS30255	COG0463	Glycosyl transferase, family 2
JM956_RS30260	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS30275	COG2089	acid synthase
JM956_RS30280	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS30285	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JM956_RS30290	COG3391	amine dehydrogenase activity
JM956_RS30305	COG1396	sequence-specific DNA binding
JM956_RS30330	COG0584	glycerophosphoryl diester phosphodiesterase
JM956_RS30345	COG1216	Glycosyl transferase, family 2
JM956_RS30350	COG1024	Enoyl-CoA hydratase
JM956_RS30370	COG3647	Membrane
JM956_RS30375	COG0671	phosphoesterase, PA-phosphatase related
JM956_RS30395	COG2323	membrane
JM956_RS30420	COG1396	sequence-specific DNA binding
JM956_RS30420	COG3800	Transcriptional regulator
JM956_RS30435	COG0513	Belongs to the DEAD box helicase family
JM956_RS30470	COG1401	restriction endodeoxyribonuclease activity
JM956_RS30470	COG1401	restriction endodeoxyribonuclease activity
JM956_RS30495	COG0457	Tetratricopeptide repeat
JM956_RS30555	COG0457	Tetratricopeptide repeat
JM956_RS30570	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JM956_RS30615	COG2890	protein-(glutamine-N5) methyltransferase activity
JM956_RS30645	COG0367	asparagine synthase
JM956_RS30650	COG1028	Short-chain dehydrogenase reductase Sdr
JM956_RS30665	COG0824	Thioesterase
JM956_RS30670	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JM956_RS30675	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JM956_RS30685	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS30690	COG0318	PFAM AMP-dependent synthetase and ligase
JM956_RS30755	COG0367	asparagine synthase
JM956_RS30760	COG1309	transcriptional regulator
JM956_RS30820	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM956_RS30825	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
JM956_RS30830	COG1687	branched-chain amino acid
JM956_RS30855	COG2233	PERMEase
JM956_RS30860	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
JM956_RS30865	COG0288	reversible hydration of carbon dioxide
JM956_RS30870	COG1522	sequence-specific DNA binding
JM956_RS30900	COG0542	response to heat
JM956_RS30905	COG0494	nUDIX hydrolase
JM956_RS30910	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JM956_RS30920	COG0457	Tetratricopeptide repeat
JM956_RS31085	COG3344	reverse transcriptase
JM956_RS31275	COG3620	sequence-specific DNA binding
JM956_RS31280	COG1396	sequence-specific DNA binding
JM956_RS31335	COG1388	LysM domain
JM956_RS31335	COG3409	Peptidoglycan-binding domain 1 protein
JM956_RS31335	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM956_RS31415	COG0740	serine-type endopeptidase activity
JM956_RS31515	COG3409	Peptidoglycan-binding domain 1 protein
JM956_RS31515	COG3773	Cell wall hydrolase
JM956_RS31525	COG0582	viral genome integration into host DNA