BC0001 SM00382 ATPases associated with a variety of cellular activities BC0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BC0002 SM00480 DNA polymerase III beta subunit BC0005 SM00387 Histidine kinase-like ATPases BC0005 SM00433 TopoisomeraseII BC0006 SM00434 DNA Topoisomerase IV BC0013 SM00116 Domain in cystathionine beta-synthase and other proteins. BC0013 SM01240 BC0013 BC0014 SM00936 Penicillin-binding protein 5, C-terminal domain BC0024 SM00382 ATPases associated with a variety of cellular activities BC0026 SM00493 BC0026 BC0042 SM00966 SpoVT / AbrB like domain BC0045 SM00493 BC0045 BC0046 SM00650 Ribosomal RNA adenine dimethylases BC0055 SM01400 BC0055 BC0058 SM00487 DEAD-like helicases superfamily BC0058 SM00490 helicase superfamily c-terminal domain BC0058 SM00982 BC0058 BC0058 SM01058 CarD-like/TRCF domain BC0059 SM00966 SpoVT / AbrB like domain BC0062 SM00363 S4 RNA-binding domain BC0066 SM00316 Ribosomal protein S1-like RNA-binding domain BC0069 SM00331 Sigma factor PP2C-like phosphatases BC0069 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BC0070 SM00977 TilS substrate C-terminal domain BC0072 SM00382 ATPases associated with a variety of cellular activities BC0080 SM00905 Dihydroneopterin aldolase BC0082 SM00530 Helix-turn-helix XRE-family like proteins BC0102 SM00382 ATPases associated with a variety of cellular activities BC0102 SM01086 C-terminal, D2-small domain, of ClpB protein BC0103 SM00382 ATPases associated with a variety of cellular activities BC0105 SM00670 Large family of predicted nucleotide-binding domains BC0110 SM00840 BC0110 BC0111 SM00535 Ribonuclease III family BC0112 SM00967 RNA 2'-O ribose methyltransferase substrate binding BC0114 SM00421 helix_turn_helix, Lux Regulon BC0116 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BC0117 SM00649 Ribosomal protein L11/L12 BC0123 SM00663 RNA polymerase I subunit A N-terminus BC0128 SM00838 Elongation factor G C-terminus BC0128 SM00889 Elongation factor G, domain IV BC0130 SM01403 BC0130 BC0134 SM01382 BC0134 BC0134 SM01383 BC0134 BC0137 SM00322 K homology RNA-binding domain BC0141 SM01374 BC0141 BC0142 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BC0154 SM00316 Ribosomal protein S1-like RNA-binding domain BC0158 SM00662 RNA polymerases D BC0160 SM00382 ATPases associated with a variety of cellular activities BC0161 SM00382 ATPases associated with a variety of cellular activities BC0167 SM00646 BC0167 BC0170 SM01251 BC0170 BC0197 SM00382 ATPases associated with a variety of cellular activities BC0197 SM00930 BC0197 BC0199 SM00829 Enoylreductase BC0209 SM00382 ATPases associated with a variety of cellular activities BC0210 SM00382 ATPases associated with a variety of cellular activities BC0213 SM00342 helix_turn_helix, arabinose operon control protein BC0228 SM00563 Phosphate acyltransferases BC0230 SM00354 helix_turn _helix lactose operon repressor BC0239 SM00382 ATPases associated with a variety of cellular activities BC0244 SM00382 ATPases associated with a variety of cellular activities BC0245 SM00382 ATPases associated with a variety of cellular activities BC0259 SM00487 DEAD-like helicases superfamily BC0259 SM00490 helicase superfamily c-terminal domain BC0264 SM01005 Alanine racemase, C-terminal domain BC0267 SM00316 Ribosomal protein S1-like RNA-binding domain BC0267 SM00732 Likely ribonuclease with RNase H fold. BC0268 SM00731 SprT homologues. BC0290 SM00382 ATPases associated with a variety of cellular activities BC0291 SM00881 CoA binding domain BC0294 SM00883 Chaperonin 10 Kd subunit BC0298 SM00448 cheY-homologous receiver domain BC0298 SM00862 Transcriptional regulatory protein, C terminal BC0299 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC0299 SM00387 Histidine kinase-like ATPases BC0299 SM00388 His Kinase A (phosphoacceptor) domain BC0323 SM01001 AIR carboxylase BC0325 SM00998 Adenylosuccinate lyase C-terminus BC0328 SM01211 BC0328 BC0333 SM00798 AICARFT/IMPCHase bienzyme BC0333 SM00851 MGS-like domain BC0334 SM01209 BC0334 BC0334 SM01210 BC0334 BC0336 SM00244 prohibitin homologues BC0341 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BC0341 SM00292 breast cancer carboxy-terminal domain BC0341 SM00532 Ligase N family BC0346 SM00382 ATPases associated with a variety of cellular activities BC0346 SM00930 BC0346 BC0352 SM00845 GatB domain BC0353 SM00046 Diacylglycerol kinase catalytic domain (presumed) BC0356 SM00382 ATPases associated with a variety of cellular activities BC0371 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BC0380 SM01007 Class II Aldolase and Adducin N-terminal domain BC0393 SM00387 Histidine kinase-like ATPases BC0393 SM00388 His Kinase A (phosphoacceptor) domain BC0402 SM00062 Bacterial periplasmic substrate-binding proteins BC0402 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BC0403 SM00382 ATPases associated with a variety of cellular activities BC0404 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC0404 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC0410 SM00100 Cyclic nucleotide-monophosphate binding domain BC0410 SM00419 helix_turn_helix, cAMP Regulatory protein BC0413 SM00642 Alpha-amylase domain BC0417 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BC0417 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BC0417 SM00493 BC0417 BC0422 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC0422 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC0427 SM00382 ATPases associated with a variety of cellular activities BC0429 SM00060 Fibronectin type 3 domain BC0429 SM00636 BC0429 BC0429 SM00637 BC0429 BC0435 SM00530 Helix-turn-helix XRE-family like proteins BC0439 SM00946 Prolyl-tRNA synthetase, C-terminal BC0448 SM00831 Cation transporter/ATPase, N-terminus BC0450 SM00226 Low molecular weight phosphatase family BC0468 SM00478 endonuclease III BC0473 SM00382 ATPases associated with a variety of cellular activities BC0477 SM00530 Helix-turn-helix XRE-family like proteins BC0487 SM00984 UDP binding domain BC0504 SM00478 endonuclease III BC0504 SM00525 BC0504 BC0509 SM00382 ATPases associated with a variety of cellular activities BC0513 SM00382 ATPases associated with a variety of cellular activities BC0544 SM00567 E-Z type HEAT repeats BC0547 SM00052 Putative diguanylate phosphodiesterase BC0547 SM00091 PAS domain BC0547 SM00267 diguanylate cyclase BC0548 SM00763 PrkA AAA domain BC0552 SM00365 Leucine-rich repeat, SDS22-like subfamily BC0552 SM00369 Leucine-rich repeats, typical (most populated) subfamily BC0556 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BC0558 SM00244 prohibitin homologues BC0559 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC0559 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC0560 SM00091 PAS domain BC0560 SM00387 Histidine kinase-like ATPases BC0561 SM00448 cheY-homologous receiver domain BC0565 SM00248 ankyrin repeats BC0567 SM00382 ATPases associated with a variety of cellular activities BC0572 SM00448 cheY-homologous receiver domain BC0572 SM00862 Transcriptional regulatory protein, C terminal BC0573 SM00387 Histidine kinase-like ATPases BC0573 SM00388 His Kinase A (phosphoacceptor) domain BC0576 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC0576 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC0577 SM00387 Histidine kinase-like ATPases BC0578 SM00448 cheY-homologous receiver domain BC0580 SM00919 Malic enzyme, NAD binding domain BC0580 SM01274 BC0580 BC0583 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC0585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC0585 SM00387 Histidine kinase-like ATPases BC0585 SM00388 His Kinase A (phosphoacceptor) domain BC0586 SM00448 cheY-homologous receiver domain BC0586 SM00862 Transcriptional regulatory protein, C terminal BC0589 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BC0589 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BC0592 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BC0592 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BC0595 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC0598 SM00530 Helix-turn-helix XRE-family like proteins BC0599 SM01321 BC0599 BC0601 SM00028 Tetratricopeptide repeats BC0610 SM01091 Transporter associated domain BC0613 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC0619 SM00382 ATPases associated with a variety of cellular activities BC0624 SM00327 von Willebrand factor (vWF) type A domain BC0625 SM00382 ATPases associated with a variety of cellular activities BC0626 SM00155 Phospholipase D. Active site motifs. BC0628 SM00052 Putative diguanylate phosphodiesterase BC0628 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BC0628 SM00267 diguanylate cyclase BC0630 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC0630 SM00866 BC0630 BC0632 SM00642 Alpha-amylase domain BC0639 SM00382 ATPases associated with a variety of cellular activities BC0640 SM00062 Bacterial periplasmic substrate-binding proteins BC0640 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BC0651 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC0651 SM00387 Histidine kinase-like ATPases BC0651 SM00388 His Kinase A (phosphoacceptor) domain BC0652 SM00448 cheY-homologous receiver domain BC0652 SM00862 Transcriptional regulatory protein, C terminal BC0657 SM00347 helix_turn_helix multiple antibiotic resistance protein BC0659 SM00354 helix_turn _helix lactose operon repressor BC0662 SM00382 ATPases associated with a variety of cellular activities BC0668 SM00829 Enoylreductase BC0670 SM00770 Zinc dependent phospholipase C (alpha toxin) BC0678 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC0680 SM00530 Helix-turn-helix XRE-family like proteins BC0690 SM00530 Helix-turn-helix XRE-family like proteins BC0709 SM00899 BC0709 BC0737 SM00116 Domain in cystathionine beta-synthase and other proteins. BC0740 SM00287 Bacterial SH3 domain homologues BC0743 SM00382 ATPases associated with a variety of cellular activities BC0758 SM00347 helix_turn_helix multiple antibiotic resistance protein BC0764 SM00382 ATPases associated with a variety of cellular activities BC0767 SM00382 ATPases associated with a variety of cellular activities BC0774 SM00640 Glycosyl hydrolases family 32 BC0776 SM00354 helix_turn _helix lactose operon repressor BC0791 SM00450 Rhodanese Homology Domain BC0793 SM00450 Rhodanese Homology Domain BC0794 SM00450 Rhodanese Homology Domain BC0794 SM00849 Metallo-beta-lactamase superfamily BC0796 SM00450 Rhodanese Homology Domain BC0797 SM00450 Rhodanese Homology Domain BC0802 SM00829 Enoylreductase BC0813 SM00287 Bacterial SH3 domain homologues BC0815 SM00382 ATPases associated with a variety of cellular activities BC0826 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BC0848 SM00344 helix_turn_helix ASNC type BC0851 SM00422 helix_turn_helix, mercury resistance BC0863 SM01060 BC0863 BC0870 SM00382 ATPases associated with a variety of cellular activities BC0871 SM00382 ATPases associated with a variety of cellular activities BC0872 SM00062 Bacterial periplasmic substrate-binding proteins BC0872 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BC0874 SM00382 ATPases associated with a variety of cellular activities BC0881 SM00387 Histidine kinase-like ATPases BC0882 SM00421 helix_turn_helix, Lux Regulon BC0882 SM00448 cheY-homologous receiver domain BC0888 SM00644 BC0888 BC0889 SM00729 Elongator protein 3, MiaB family, Radical SAM BC0896 SM00047 Lysozyme subfamily 2 BC0902 SM00646 BC0902 BC0910 SM00382 ATPases associated with a variety of cellular activities BC0911 SM00382 ATPases associated with a variety of cellular activities BC0913 SM00849 Metallo-beta-lactamase superfamily BC0927 SM00860 SMI1 / KNR4 family BC0936 SM00091 PAS domain BC0936 SM00387 Histidine kinase-like ATPases BC0937 SM00448 cheY-homologous receiver domain BC0953 SM00422 helix_turn_helix, mercury resistance BC0965 SM00894 Excalibur calcium-binding domain BC0975 SM00347 helix_turn_helix multiple antibiotic resistance protein BC0981 SM01120 BC0981 BC0986 SM00028 Tetratricopeptide repeats BC0988 SM00530 Helix-turn-helix XRE-family like proteins BC0991 SM00460 Transglutaminase/protease-like homologues BC1006 SM00331 Sigma factor PP2C-like phosphatases BC1006 SM00448 cheY-homologous receiver domain BC1007 SM00138 Methyltransferase, chemotaxis proteins BC1008 SM00387 Histidine kinase-like ATPases BC1008 SM00388 His Kinase A (phosphoacceptor) domain BC1008 SM00448 cheY-homologous receiver domain BC1014 SM00829 Enoylreductase BC1021 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BC1026 SM00028 Tetratricopeptide repeats BC1031 SM00835 Cupin BC1032 SM00530 Helix-turn-helix XRE-family like proteins BC1047 SM00347 helix_turn_helix multiple antibiotic resistance protein BC1050 SM00382 ATPases associated with a variety of cellular activities BC1083 SM00354 helix_turn _helix lactose operon repressor BC1085 SM00849 Metallo-beta-lactamase superfamily BC1094 SM00382 ATPases associated with a variety of cellular activities BC1112 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BC1115 SM00342 helix_turn_helix, arabinose operon control protein BC1115 SM00871 Bacterial transcription activator, effector binding domain BC1118 SM00387 Histidine kinase-like ATPases BC1118 SM00388 His Kinase A (phosphoacceptor) domain BC1119 SM00448 cheY-homologous receiver domain BC1119 SM00862 Transcriptional regulatory protein, C terminal BC1124 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC1124 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC1131 SM00357 Cold shock protein domain BC1155 SM01060 BC1155 BC1157 SM00642 Alpha-amylase domain BC1158 SM00530 Helix-turn-helix XRE-family like proteins BC1160 SM00316 Ribosomal protein S1-like RNA-binding domain BC1168 SM00382 ATPases associated with a variety of cellular activities BC1168 SM01086 C-terminal, D2-small domain, of ClpB protein BC1174 SM00825 Beta-ketoacyl synthase BC1182 SM00382 ATPases associated with a variety of cellular activities BC1183 SM00382 ATPases associated with a variety of cellular activities BC1191 SM00155 Phospholipase D. Active site motifs. BC1196 SM01118 BC1196 BC1198 SM00954 Region found in RelA / SpoT proteins BC1230 SM00635 Bacterial Ig-like domain 2 BC1244 SM01324 BC1244 BC1252 SM00861 Transketolase, pyrimidine binding domain BC1253 SM00530 Helix-turn-helix XRE-family like proteins BC1282 SM00530 Helix-turn-helix XRE-family like proteins BC1286 SM00382 ATPases associated with a variety of cellular activities BC1290 SM00014 Acid phosphatase homologues BC1300 SM00448 cheY-homologous receiver domain BC1300 SM00862 Transcriptional regulatory protein, C terminal BC1301 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC1301 SM00387 Histidine kinase-like ATPases BC1301 SM00388 His Kinase A (phosphoacceptor) domain BC1302 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC1302 SM00895 BC1302 BC1317 SM00822 BC1317 BC1324 SM00382 ATPases associated with a variety of cellular activities BC1329 SM00420 helix_turn_helix, Deoxyribose operon repressor BC1329 SM01134 BC1329 BC1331 SM00365 Leucine-rich repeat, SDS22-like subfamily BC1331 SM00369 Leucine-rich repeats, typical (most populated) subfamily BC1331 SM00725 NEAr Transporter domain BC1336 SM00387 Histidine kinase-like ATPases BC1336 SM00388 His Kinase A (phosphoacceptor) domain BC1337 SM00347 helix_turn_helix multiple antibiotic resistance protein BC1340 SM00387 Histidine kinase-like ATPases BC1340 SM00388 His Kinase A (phosphoacceptor) domain BC1356 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC1357 SM00382 ATPases associated with a variety of cellular activities BC1359 SM00382 ATPases associated with a variety of cellular activities BC1363 SM00344 helix_turn_helix ASNC type BC1387 SM00347 helix_turn_helix multiple antibiotic resistance protein BC1400 SM00917 LeuA allosteric (dimerisation) domain BC1401 SM01329 BC1401 BC1438 SM00387 Histidine kinase-like ATPases BC1439 SM00421 helix_turn_helix, Lux Regulon BC1439 SM00448 cheY-homologous receiver domain BC1458 SM00091 PAS domain BC1458 SM00387 Histidine kinase-like ATPases BC1458 SM00388 His Kinase A (phosphoacceptor) domain BC1472 SM00363 S4 RNA-binding domain BC1477 SM00448 cheY-homologous receiver domain BC1477 SM00862 Transcriptional regulatory protein, C terminal BC1478 SM00091 PAS domain BC1478 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC1478 SM00387 Histidine kinase-like ATPases BC1478 SM00388 His Kinase A (phosphoacceptor) domain BC1480 SM00257 Lysin motif BC1485 SM00487 DEAD-like helicases superfamily BC1485 SM00490 helicase superfamily c-terminal domain BC1487 SM00257 Lysin motif BC1489 SM00422 helix_turn_helix, mercury resistance BC1491 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BC1494 SM00644 BC1494 BC1496 SM00870 BC1496 BC1498 SM00316 Ribosomal protein S1-like RNA-binding domain BC1499 SM01240 BC1499 BC1510 SM00411 bacterial (prokaryotic) histone like domain BC1515 SM00562 BC1515 BC1519 SM00028 Tetratricopeptide repeats BC1520 SM00914 BC1520 BC1529 SM00986 Uracil DNA glycosylase superfamily BC1529 SM00987 UreE urease accessory protein, C-terminal domain BC1533 SM00851 MGS-like domain BC1548 SM00478 endonuclease III BC1550 SM00060 Fibronectin type 3 domain BC1551 SM01321 BC1551 BC1563 SM00981 BC1563 BC1565 SM00491 BC1565 BC1576 SM00450 Rhodanese Homology Domain BC1582 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BC1582 SM00475 5'-3' exonuclease BC1603 SM00357 Cold shock protein domain BC1613 SM00849 Metallo-beta-lactamase superfamily BC1614 SM00422 helix_turn_helix, mercury resistance BC1614 SM00871 Bacterial transcription activator, effector binding domain BC1627 SM00448 cheY-homologous receiver domain BC1628 SM00073 Histidine Phosphotransfer domain BC1628 SM00260 Two component signalling adaptor domain BC1628 SM00387 Histidine kinase-like ATPases BC1628 SM01231 BC1628 BC1632 SM00138 Methyltransferase, chemotaxis proteins BC1647 SM00382 ATPases associated with a variety of cellular activities BC1654 SM00260 Two component signalling adaptor domain BC1654 SM00448 cheY-homologous receiver domain BC1672 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BC1680 SM00530 Helix-turn-helix XRE-family like proteins BC1684 SM00382 ATPases associated with a variety of cellular activities BC1686 SM00849 Metallo-beta-lactamase superfamily BC1686 SM01027 Beta-Casp domain BC1691 SM00855 Phosphoglycerate mutase family BC1695 SM00347 helix_turn_helix multiple antibiotic resistance protein BC1703 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC1703 SM00895 BC1703 BC1705 SM00833 Cobalamin synthesis protein cobW C-terminal domain BC1710 SM00422 helix_turn_helix, mercury resistance BC1724 SM00530 Helix-turn-helix XRE-family like proteins BC1732 SM00421 helix_turn_helix, Lux Regulon BC1732 SM00448 cheY-homologous receiver domain BC1734 SM00382 ATPases associated with a variety of cellular activities BC1737 SM00155 Phospholipase D. Active site motifs. BC1741 SM00919 Malic enzyme, NAD binding domain BC1741 SM01274 BC1741 BC1742 SM00387 Histidine kinase-like ATPases BC1743 SM00448 cheY-homologous receiver domain BC1744 SM00487 DEAD-like helicases superfamily BC1744 SM00490 helicase superfamily c-terminal domain BC1783 SM00854 Bacterial capsule synthesis protein PGA_cap BC1789 SM00850 LytTr DNA-binding domain BC1800 SM00448 cheY-homologous receiver domain BC1800 SM00862 Transcriptional regulatory protein, C terminal BC1801 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC1801 SM00387 Histidine kinase-like ATPases BC1801 SM00388 His Kinase A (phosphoacceptor) domain BC1804 SM00450 Rhodanese Homology Domain BC1820 SM01133 BC1820 BC1822 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BC1828 SM01011 Aminopeptidase P, N-terminal domain BC1832 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BC1832 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BC1832 SM00493 BC1832 BC1847 SM00530 Helix-turn-helix XRE-family like proteins BC1850 SM00530 Helix-turn-helix XRE-family like proteins BC1861 SM00487 DEAD-like helicases superfamily BC1864 SM00482 DNA polymerase A domain BC1884 SM00966 SpoVT / AbrB like domain BC1911 SM00644 BC1911 BC1914 SM00530 Helix-turn-helix XRE-family like proteins BC1915 SM00530 Helix-turn-helix XRE-family like proteins BC1921 SM00857 Resolvase, N terminal domain BC1926 SM00833 Cobalamin synthesis protein cobW C-terminal domain BC1928 SM00382 ATPases associated with a variety of cellular activities BC1929 SM00382 ATPases associated with a variety of cellular activities BC1936 SM00347 helix_turn_helix multiple antibiotic resistance protein BC1940 SM00382 ATPases associated with a variety of cellular activities BC1941 SM00382 ATPases associated with a variety of cellular activities BC1953 SM00287 Bacterial SH3 domain homologues BC1955 SM00382 ATPases associated with a variety of cellular activities BC1956 SM00448 cheY-homologous receiver domain BC1956 SM00862 Transcriptional regulatory protein, C terminal BC1957 SM00387 Histidine kinase-like ATPases BC1957 SM00388 His Kinase A (phosphoacceptor) domain BC1972 SM00448 cheY-homologous receiver domain BC1972 SM00862 Transcriptional regulatory protein, C terminal BC1973 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC1973 SM00387 Histidine kinase-like ATPases BC1973 SM00388 His Kinase A (phosphoacceptor) domain BC1987 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC1991 SM00460 Transglutaminase/protease-like homologues BC1996 SM00966 SpoVT / AbrB like domain BC1998 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC2006 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC2006 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC2019 SM00833 Cobalamin synthesis protein cobW C-terminal domain BC2029 SM00855 Phosphoglycerate mutase family BC2039 SM00155 Phospholipase D. Active site motifs. BC2044 SM01091 Transporter associated domain BC2057 SM00244 prohibitin homologues BC2059 SM00855 Phosphoglycerate mutase family BC2063 SM01005 Alanine racemase, C-terminal domain BC2068 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC2103 SM00487 DEAD-like helicases superfamily BC2103 SM00490 helicase superfamily c-terminal domain BC2107 SM00829 Enoylreductase BC2115 SM00460 Transglutaminase/protease-like homologues BC2118 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BC2122 SM00100 Cyclic nucleotide-monophosphate binding domain BC2122 SM00419 helix_turn_helix, cAMP Regulatory protein BC2123 SM00729 Elongator protein 3, MiaB family, Radical SAM BC2125 SM00852 Probable molybdopterin binding domain BC2147 SM00028 Tetratricopeptide repeats BC2150 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BC2151 SM00382 ATPases associated with a variety of cellular activities BC2155 SM00567 E-Z type HEAT repeats BC2155 SM00932 Scaffold protein Nfu/NifU N terminal BC2163 SM00028 Tetratricopeptide repeats BC2181 SM00530 Helix-turn-helix XRE-family like proteins BC2184 SM00382 ATPases associated with a variety of cellular activities BC2195 SM00563 Phosphate acyltransferases BC2207 SM00646 BC2207 BC2216 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BC2217 SM00421 helix_turn_helix, Lux Regulon BC2217 SM00448 cheY-homologous receiver domain BC2220 SM00829 Enoylreductase BC2225 SM01350 BC2225 BC2232 SM00382 ATPases associated with a variety of cellular activities BC2240 SM01091 Transporter associated domain BC2243 SM00387 Histidine kinase-like ATPases BC2243 SM00388 His Kinase A (phosphoacceptor) domain BC2246 SM00882 Coenzyme A transferase BC2247 SM00882 Coenzyme A transferase BC2250 SM00382 ATPases associated with a variety of cellular activities BC2258 SM00219 Tyrosine kinase, catalytic domain BC2260 SM00014 Acid phosphatase homologues BC2298 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC2309 SM00923 MbtH-like protein BC2313 SM00411 bacterial (prokaryotic) histone like domain BC2321 SM00363 S4 RNA-binding domain BC2322 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BC2323 SM00382 ATPases associated with a variety of cellular activities BC2330 SM00849 Metallo-beta-lactamase superfamily BC2335 SM00100 Cyclic nucleotide-monophosphate binding domain BC2339 SM00849 Metallo-beta-lactamase superfamily BC2345 SM01321 BC2345 BC2351 SM00530 Helix-turn-helix XRE-family like proteins BC2358 SM00357 Cold shock protein domain BC2363 SM00859 Semialdehyde dehydrogenase, NAD binding domain BC2371 SM00382 ATPases associated with a variety of cellular activities BC2372 SM00382 ATPases associated with a variety of cellular activities BC2379 SM00530 Helix-turn-helix XRE-family like proteins BC2398 SM01207 BC2398 BC2401 SM00347 helix_turn_helix multiple antibiotic resistance protein BC2406 SM00849 Metallo-beta-lactamase superfamily BC2408 SM00487 DEAD-like helicases superfamily BC2408 SM00490 helicase superfamily c-terminal domain BC2434 SM00347 helix_turn_helix multiple antibiotic resistance protein BC2435 SM00855 Phosphoglycerate mutase family BC2442 SM00421 helix_turn_helix, Lux Regulon BC2443 SM00530 Helix-turn-helix XRE-family like proteins BC2444 SM00966 SpoVT / AbrB like domain BC2448 SM00936 Penicillin-binding protein 5, C-terminal domain BC2453 SM00823 Phosphopantetheine attachment site BC2456 SM00823 Phosphopantetheine attachment site BC2464 SM00047 Lysozyme subfamily 2 BC2466 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BC2478 SM00382 ATPases associated with a variety of cellular activities BC2484 SM00878 Biotin carboxylase C-terminal domain BC2497 SM00387 Histidine kinase-like ATPases BC2497 SM00388 His Kinase A (phosphoacceptor) domain BC2498 SM00448 cheY-homologous receiver domain BC2498 SM00862 Transcriptional regulatory protein, C terminal BC2507 SM00342 helix_turn_helix, arabinose operon control protein BC2513 SM00382 ATPases associated with a variety of cellular activities BC2514 SM00422 helix_turn_helix, mercury resistance BC2514 SM00871 Bacterial transcription activator, effector binding domain BC2526 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC2538 SM00448 cheY-homologous receiver domain BC2538 SM00862 Transcriptional regulatory protein, C terminal BC2539 SM00387 Histidine kinase-like ATPases BC2541 SM00382 ATPases associated with a variety of cellular activities BC2543 SM00382 ATPases associated with a variety of cellular activities BC2549 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC2550 SM01209 BC2550 BC2558 SM00530 Helix-turn-helix XRE-family like proteins BC2559 SM00530 Helix-turn-helix XRE-family like proteins BC2581 SM00507 HNH nucleases BC2614 SM01321 BC2614 BC2619 SM00387 Histidine kinase-like ATPases BC2619 SM00388 His Kinase A (phosphoacceptor) domain BC2632 SM00342 helix_turn_helix, arabinose operon control protein BC2632 SM00871 Bacterial transcription activator, effector binding domain BC2649 SM00530 Helix-turn-helix XRE-family like proteins BC2650 SM00507 HNH nucleases BC2655 SM00382 ATPases associated with a variety of cellular activities BC2660 SM00829 Enoylreductase BC2661 SM00014 Acid phosphatase homologues BC2662 SM00740 BC2662 BC2672 SM00422 helix_turn_helix, mercury resistance BC2677 SM00287 Bacterial SH3 domain homologues BC2680 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC2693 SM00480 DNA polymerase III beta subunit BC2719 SM00382 ATPases associated with a variety of cellular activities BC2734 SM00642 Alpha-amylase domain BC2738 SM00871 Bacterial transcription activator, effector binding domain BC2742 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC2766 SM00382 ATPases associated with a variety of cellular activities BC2770 SM00420 helix_turn_helix, Deoxyribose operon repressor BC2770 SM01134 BC2770 BC2778 SM00861 Transketolase, pyrimidine binding domain BC2791 SM00116 Domain in cystathionine beta-synthase and other proteins. BC2791 SM00382 ATPases associated with a variety of cellular activities BC2798 SM00060 Fibronectin type 3 domain BC2798 SM00495 Chitin-binding domain type 3 BC2815 SM00341 Helicase and RNase D C-terminal BC2815 SM00487 DEAD-like helicases superfamily BC2815 SM00490 helicase superfamily c-terminal domain BC2815 SM00956 BC2815 BC2823 SM00646 BC2823 BC2826 SM01131 BC2826 BC2829 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BC2833 SM01130 BC2833 BC2837 SM00091 PAS domain BC2837 SM00382 ATPases associated with a variety of cellular activities BC2850 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BC2856 SM00248 ankyrin repeats BC2861 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BC2863 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC2863 SM00387 Histidine kinase-like ATPases BC2863 SM00388 His Kinase A (phosphoacceptor) domain BC2864 SM00448 cheY-homologous receiver domain BC2864 SM00862 Transcriptional regulatory protein, C terminal BC2902 SM00382 ATPases associated with a variety of cellular activities BC2911 SM00062 Bacterial periplasmic substrate-binding proteins BC2912 SM00382 ATPases associated with a variety of cellular activities BC2917 SM00028 Tetratricopeptide repeats BC2928 SM00849 Metallo-beta-lactamase superfamily BC2933 SM00382 ATPases associated with a variety of cellular activities BC2942 SM00830 Chorismate mutase type II BC2952 SM00287 Bacterial SH3 domain homologues BC2963 SM00382 ATPases associated with a variety of cellular activities BC2967 SM01133 BC2967 BC2971 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC2975 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BC2979 SM00346 helix_turn_helix isocitrate lyase regulation BC2986 SM00098 Alkaline phosphatase homologues BC2988 SM00530 Helix-turn-helix XRE-family like proteins BC3008 SM01060 BC3008 BC3025 SM00347 helix_turn_helix multiple antibiotic resistance protein BC3026 SM00889 Elongation factor G, domain IV BC3029 SM00773 Proposed nucleic acid binding domain BC3030 SM00860 SMI1 / KNR4 family BC3033 SM00342 helix_turn_helix, arabinose operon control protein BC3033 SM00871 Bacterial transcription activator, effector binding domain BC3039 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC3042 SM00387 Histidine kinase-like ATPases BC3042 SM00388 His Kinase A (phosphoacceptor) domain BC3043 SM00448 cheY-homologous receiver domain BC3043 SM00862 Transcriptional regulatory protein, C terminal BC3067 SM00797 Allophanate hydrolase subunit 2 BC3068 SM00796 Allophanate hydrolase subunit 1 BC3069 SM00346 helix_turn_helix isocitrate lyase regulation BC3072 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC3088 SM00849 Metallo-beta-lactamase superfamily BC3094 SM00870 BC3094 BC3095 SM00530 Helix-turn-helix XRE-family like proteins BC3100 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BC3100 SM00091 PAS domain BC3100 SM00387 Histidine kinase-like ATPases BC3100 SM00388 His Kinase A (phosphoacceptor) domain BC3105 SM00342 helix_turn_helix, arabinose operon control protein BC3107 SM00465 GIY-YIG type nucleases (URI domain) BC3113 SM00448 cheY-homologous receiver domain BC3114 SM00387 Histidine kinase-like ATPases BC3128 SM00347 helix_turn_helix multiple antibiotic resistance protein BC3152 SM00226 Low molecular weight phosphatase family BC3155 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC3161 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BC3167 SM01092 CO dehydrogenase flavoprotein C-terminal domain BC3175 SM00344 helix_turn_helix ASNC type BC3194 SM00347 helix_turn_helix multiple antibiotic resistance protein BC3200 SM00448 cheY-homologous receiver domain BC3200 SM00862 Transcriptional regulatory protein, C terminal BC3201 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC3201 SM00387 Histidine kinase-like ATPases BC3201 SM00388 His Kinase A (phosphoacceptor) domain BC3207 SM00421 helix_turn_helix, Lux Regulon BC3207 SM00448 cheY-homologous receiver domain BC3222 SM00382 ATPases associated with a variety of cellular activities BC3224 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC3227 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC3227 SM00387 Histidine kinase-like ATPases BC3227 SM00388 His Kinase A (phosphoacceptor) domain BC3228 SM00448 cheY-homologous receiver domain BC3228 SM00862 Transcriptional regulatory protein, C terminal BC3244 SM00344 helix_turn_helix ASNC type BC3253 SM00342 helix_turn_helix, arabinose operon control protein BC3257 SM00644 BC3257 BC3284 SM00860 SMI1 / KNR4 family BC3289 SM00860 SMI1 / KNR4 family BC3300 SM00860 SMI1 / KNR4 family BC3308 SM00854 Bacterial capsule synthesis protein PGA_cap BC3313 SM00347 helix_turn_helix multiple antibiotic resistance protein BC3329 SM00382 ATPases associated with a variety of cellular activities BC3332 SM00530 Helix-turn-helix XRE-family like proteins BC3350 SM00028 Tetratricopeptide repeats BC3355 SM01091 Transporter associated domain BC3356 SM00422 helix_turn_helix, mercury resistance BC3372 SM01350 BC3372 BC3377 SM00829 Enoylreductase BC3380 SM00829 Enoylreductase BC3384 SM01276 BC3384 BC3385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC3385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC3399 SM00914 BC3399 BC3405 SM00866 BC3405 BC3414 SM00849 Metallo-beta-lactamase superfamily BC3423 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC3433 SM00871 Bacterial transcription activator, effector binding domain BC3434 SM00420 helix_turn_helix, Deoxyribose operon repressor BC3436 SM00382 ATPases associated with a variety of cellular activities BC3440 SM00849 Metallo-beta-lactamase superfamily BC3441 SM00641 Glycosyl hydrolases family 25 BC3453 SM00849 Metallo-beta-lactamase superfamily BC3477 SM00829 Enoylreductase BC3478 SM00855 Phosphoglycerate mutase family BC3480 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BC3480 SM00534 ATPase domain of DNA mismatch repair MUTS family BC3482 SM00642 Alpha-amylase domain BC3486 SM00422 helix_turn_helix, mercury resistance BC3486 SM00871 Bacterial transcription activator, effector binding domain BC3497 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC3498 SM00829 Enoylreductase BC3501 SM00028 Tetratricopeptide repeats BC3511 SM00450 Rhodanese Homology Domain BC3511 SM00849 Metallo-beta-lactamase superfamily BC3518 SM00028 Tetratricopeptide repeats BC3520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC3520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC3520 SM00319 Homologues of the ligand binding domain of Tar BC3524 SM00646 BC3524 BC3528 SM00387 Histidine kinase-like ATPases BC3528 SM00388 His Kinase A (phosphoacceptor) domain BC3529 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BC3538 SM00479 BC3538 BC3539 SM00357 Cold shock protein domain BC3544 SM01022 BC3544 BC3556 SM00822 BC3556 BC3566 SM00852 Probable molybdopterin binding domain BC3569 SM00729 Elongator protein 3, MiaB family, Radical SAM BC3573 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BC3573 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BC3591 SM00382 ATPases associated with a variety of cellular activities BC3593 SM00420 helix_turn_helix, Deoxyribose operon repressor BC3596 SM00434 DNA Topoisomerase IV BC3597 SM00387 Histidine kinase-like ATPases BC3597 SM00433 TopoisomeraseII BC3599 SM00881 CoA binding domain BC3600 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BC3601 SM00448 cheY-homologous receiver domain BC3601 SM00862 Transcriptional regulatory protein, C terminal BC3604 SM01207 BC3604 BC3607 SM00257 Lysin motif BC3607 SM00636 BC3607 BC3611 SM00479 BC3611 BC3637 SM00644 BC3637 BC3637 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BC3638 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BC3641 SM00091 PAS domain BC3641 SM00387 Histidine kinase-like ATPases BC3641 SM00388 His Kinase A (phosphoacceptor) domain BC3648 SM01058 CarD-like/TRCF domain BC3666 SM00382 ATPases associated with a variety of cellular activities BC3677 SM00287 Bacterial SH3 domain homologues BC3677 SM00641 Glycosyl hydrolases family 25 BC3678 SM00382 ATPases associated with a variety of cellular activities BC3679 SM00382 ATPases associated with a variety of cellular activities BC3682 SM00861 Transketolase, pyrimidine binding domain BC3685 SM00382 ATPases associated with a variety of cellular activities BC3686 SM00062 Bacterial periplasmic substrate-binding proteins BC3689 SM00857 Resolvase, N terminal domain BC3694 SM00644 BC3694 BC3704 SM00530 Helix-turn-helix XRE-family like proteins BC3706 SM00422 helix_turn_helix, mercury resistance BC3720 SM00420 helix_turn_helix, Deoxyribose operon repressor BC3720 SM01134 BC3720 BC3725 SM00636 BC3725 BC3728 SM00411 bacterial (prokaryotic) histone like domain BC3735 SM00382 ATPases associated with a variety of cellular activities BC3740 SM00342 helix_turn_helix, arabinose operon control protein BC3742 SM00478 endonuclease III BC3747 SM00052 Putative diguanylate phosphodiesterase BC3747 SM00091 PAS domain BC3747 SM00267 diguanylate cyclase BC3756 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC3758 SM00866 BC3758 BC3761 SM00148 Phospholipase C, catalytic domain (part); domain X BC3768 SM00853 MutL C terminal dimerisation domain BC3768 SM01340 BC3768 BC3769 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BC3769 SM00534 ATPase domain of DNA mismatch repair MUTS family BC3772 SM00729 Elongator protein 3, MiaB family, Radical SAM BC3778 SM00322 K homology RNA-binding domain BC3778 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BC3779 SM00382 ATPases associated with a variety of cellular activities BC3780 SM00852 Probable molybdopterin binding domain BC3790 SM00382 ATPases associated with a variety of cellular activities BC3792 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC3792 SM00866 BC3792 BC3793 SM00382 ATPases associated with a variety of cellular activities BC3793 SM00843 BC3793 BC3796 SM00849 Metallo-beta-lactamase superfamily BC3797 SM01130 BC3797 BC3799 SM00859 Semialdehyde dehydrogenase, NAD binding domain BC3805 SM00316 Ribosomal protein S1-like RNA-binding domain BC3805 SM00322 K homology RNA-binding domain BC3806 SM01387 BC3806 BC3807 SM00904 Riboflavin kinase BC3814 SM00316 Ribosomal protein S1-like RNA-binding domain BC3814 SM00322 K homology RNA-binding domain BC3816 SM00479 BC3816 BC3816 SM00481 DNA polymerase alpha chain like domain BC3827 SM00382 ATPases associated with a variety of cellular activities BC3827 SM01086 C-terminal, D2-small domain, of ClpB protein BC3831 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BC3831 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BC3831 SM00493 BC3831 BC3833 SM00881 CoA binding domain BC3843 SM00382 ATPases associated with a variety of cellular activities BC3843 SM00962 SRP54-type protein, GTPase domain BC3843 SM00963 SRP54-type protein, helical bundle domain BC3845 SM00382 ATPases associated with a variety of cellular activities BC3845 SM00962 SRP54-type protein, GTPase domain BC3845 SM00963 SRP54-type protein, helical bundle domain BC3846 SM00968 SMC proteins Flexible Hinge Domain BC3847 SM00358 Double-stranded RNA binding motif BC3847 SM00535 Ribonuclease III family BC3849 SM00822 BC3849 BC3850 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BC3853 SM00487 DEAD-like helicases superfamily BC3853 SM00490 helicase superfamily c-terminal domain BC3854 SM01120 BC3854 BC3854 SM01121 BC3854 BC3857 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BC3860 SM00220 Serine/Threonine protein kinases, catalytic domain BC3860 SM00740 BC3860 BC3861 SM00331 Sigma factor PP2C-like phosphatases BC3861 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BC3866 SM00487 DEAD-like helicases superfamily BC3866 SM00490 helicase superfamily c-terminal domain BC3868 SM01409 BC3868 BC3869 SM00072 Guanylate kinase homologues. BC3883 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BC3886 SM00851 MGS-like domain BC3886 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BC3886 SM01209 BC3886 BC3887 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BC3892 SM00363 S4 RNA-binding domain BC3897 SM00363 S4 RNA-binding domain BC3906 SM00864 Tubulin/FtsZ family, GTPase domain BC3906 SM00865 Tubulin/FtsZ family, C-terminal domain BC3907 SM00842 Cell division protein FtsA BC3915 SM00740 BC3915 BC3916 SM00740 BC3916 BC3922 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BC3926 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BC3934 SM00855 Phosphoglycerate mutase family BC3947 SM00878 Biotin carboxylase C-terminal domain BC3951 SM00670 Large family of predicted nucleotide-binding domains BC3956 SM00838 Elongation factor G C-terminus BC3972 SM00861 Transketolase, pyrimidine binding domain BC3977 SM00849 Metallo-beta-lactamase superfamily BC3989 SM00052 Putative diguanylate phosphodiesterase BC4007 SM00387 Histidine kinase-like ATPases BC4007 SM00388 His Kinase A (phosphoacceptor) domain BC4010 SM00354 helix_turn _helix lactose operon repressor BC4014 SM00642 Alpha-amylase domain BC4015 SM00642 Alpha-amylase domain BC4016 SM00382 ATPases associated with a variety of cellular activities BC4022 SM00382 ATPases associated with a variety of cellular activities BC4038 SM01007 Class II Aldolase and Adducin N-terminal domain BC4044 SM00267 diguanylate cyclase BC4051 SM01061 CAT RNA binding domain BC4053 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC4053 SM00866 BC4053 BC4056 SM00849 Metallo-beta-lactamase superfamily BC4073 SM00387 Histidine kinase-like ATPases BC4075 SM00936 Penicillin-binding protein 5, C-terminal domain BC4076 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC4077 SM00382 ATPases associated with a variety of cellular activities BC4081 SM00347 helix_turn_helix multiple antibiotic resistance protein BC4085 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BC4104 SM00354 helix_turn _helix lactose operon repressor BC4108 SM00704 CDGSH-type zinc finger. Function unknown. BC4114 SM00729 Elongator protein 3, MiaB family, Radical SAM BC4114 SM00876 Biotin and Thiamin Synthesis associated domain BC4124 SM00347 helix_turn_helix multiple antibiotic resistance protein BC4133 SM00849 Metallo-beta-lactamase superfamily BC4138 SM00849 Metallo-beta-lactamase superfamily BC4140 SM00831 Cation transporter/ATPase, N-terminus BC4148 SM00382 ATPases associated with a variety of cellular activities BC4150 SM00062 Bacterial periplasmic substrate-binding proteins BC4150 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BC4158 SM00861 Transketolase, pyrimidine binding domain BC4162 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BC4165 SM00091 PAS domain BC4165 SM00382 ATPases associated with a variety of cellular activities BC4170 SM00448 cheY-homologous receiver domain BC4172 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BC4175 SM00363 S4 RNA-binding domain BC4176 SM00861 Transketolase, pyrimidine binding domain BC4183 SM00878 Biotin carboxylase C-terminal domain BC4193 SM00382 ATPases associated with a variety of cellular activities BC4197 SM00841 Elongation factor P, C-terminal BC4197 SM01185 BC4197 BC4204 SM00529 Helix-turn-helix diphteria tox regulatory element BC4210 SM00450 Rhodanese Homology Domain BC4211 SM00354 helix_turn _helix lactose operon repressor BC4221 SM00382 ATPases associated with a variety of cellular activities BC4222 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC4227 SM00487 DEAD-like helicases superfamily BC4227 SM00490 helicase superfamily c-terminal domain BC4233 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BC4239 SM00382 ATPases associated with a variety of cellular activities BC4250 SM01018 B12 binding domain BC4256 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC4258 SM00849 Metallo-beta-lactamase superfamily BC4266 SM00382 ATPases associated with a variety of cellular activities BC4279 SM00382 ATPases associated with a variety of cellular activities BC4282 SM00518 AP endonuclease family 2 BC4283 SM00487 DEAD-like helicases superfamily BC4283 SM00490 helicase superfamily c-terminal domain BC4290 SM00400 zinc finger BC4290 SM00493 BC4290 BC4290 SM00766 DNA primase DnaG DnaB-binding BC4294 SM00116 Domain in cystathionine beta-synthase and other proteins. BC4301 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BC4308 SM00729 Elongator protein 3, MiaB family, Radical SAM BC4311 SM00271 DnaJ molecular chaperone homology domain BC4315 SM00729 Elongator protein 3, MiaB family, Radical SAM BC4317 SM00838 Elongation factor G C-terminus BC4322 SM00849 Metallo-beta-lactamase superfamily BC4324 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BC4328 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BC4341 SM00954 Region found in RelA / SpoT proteins BC4343 SM00098 Alkaline phosphatase homologues BC4348 SM00855 Phosphoglycerate mutase family BC4356 SM00530 Helix-turn-helix XRE-family like proteins BC4361 SM00382 ATPases associated with a variety of cellular activities BC4381 SM00732 Likely ribonuclease with RNase H fold. BC4383 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BC4390 SM00028 Tetratricopeptide repeats BC4394 SM00382 ATPases associated with a variety of cellular activities BC4401 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BC4401 SM00954 Region found in RelA / SpoT proteins BC4410 SM01323 BC4410 BC4414 SM00382 ATPases associated with a variety of cellular activities BC4415 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BC4420 SM00257 Lysin motif BC4431 SM00382 ATPases associated with a variety of cellular activities BC4432 SM00387 Histidine kinase-like ATPases BC4433 SM00448 cheY-homologous receiver domain BC4433 SM00862 Transcriptional regulatory protein, C terminal BC4435 SM01317 BC4435 BC4457 SM00487 DEAD-like helicases superfamily BC4467 SM00257 Lysin motif BC4469 SM01004 Delta-aminolevulinic acid dehydratase BC4474 SM00347 helix_turn_helix multiple antibiotic resistance protein BC4477 SM00382 ATPases associated with a variety of cellular activities BC4477 SM00464 Found in ATP-dependent protease La (LON) BC4478 SM00382 ATPases associated with a variety of cellular activities BC4479 SM00382 ATPases associated with a variety of cellular activities BC4479 SM00994 ClpX C4-type zinc finger BC4479 SM01086 C-terminal, D2-small domain, of ClpB protein BC4495 SM00909 Sporulation and spore germination BC4501 SM00421 helix_turn_helix, Lux Regulon BC4505 SM00530 Helix-turn-helix XRE-family like proteins BC4510 SM00382 ATPases associated with a variety of cellular activities BC4520 SM00465 GIY-YIG type nucleases (URI domain) BC4523 SM00893 Electron transfer flavoprotein domain BC4537 SM00382 ATPases associated with a variety of cellular activities BC4538 SM00387 Histidine kinase-like ATPases BC4538 SM00388 His Kinase A (phosphoacceptor) domain BC4539 SM00448 cheY-homologous receiver domain BC4539 SM00862 Transcriptional regulatory protein, C terminal BC4541 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BC4544 SM00382 ATPases associated with a variety of cellular activities BC4547 SM00725 NEAr Transporter domain BC4548 SM00725 NEAr Transporter domain BC4549 SM00725 NEAr Transporter domain BC4551 SM00363 S4 RNA-binding domain BC4553 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BC4553 SM00481 DNA polymerase alpha chain like domain BC4553 SM00483 DNA polymerase X family BC4560 SM00873 B3/4 domain BC4560 SM00874 tRNA synthetase B5 domain BC4560 SM00896 Ferredoxin-fold anticodon binding domain BC4562 SM00967 RNA 2'-O ribose methyltransferase substrate binding BC4576 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BC4579 SM00382 ATPases associated with a variety of cellular activities BC4583 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BC4586 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BC4586 SM01232 BC4586 BC4587 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BC4587 SM00474 3'-5' exonuclease BC4587 SM00475 5'-3' exonuclease BC4587 SM00482 DNA polymerase A domain BC4588 SM00091 PAS domain BC4588 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC4588 SM00387 Histidine kinase-like ATPases BC4588 SM00388 His Kinase A (phosphoacceptor) domain BC4589 SM00448 cheY-homologous receiver domain BC4589 SM00862 Transcriptional regulatory protein, C terminal BC4593 SM01329 BC4593 BC4603 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC4604 SM00919 Malic enzyme, NAD binding domain BC4604 SM01274 BC4604 BC4605 SM00481 DNA polymerase alpha chain like domain BC4611 SM00116 Domain in cystathionine beta-synthase and other proteins. BC4613 SM00849 Metallo-beta-lactamase superfamily BC4623 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BC4623 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BC4647 SM00981 BC4647 BC4655 SM00363 S4 RNA-binding domain BC4655 SM01390 BC4655 BC4657 SM00363 S4 RNA-binding domain BC4658 SM01266 BC4658 BC4661 SM00116 Domain in cystathionine beta-synthase and other proteins. BC4665 SM00448 cheY-homologous receiver domain BC4665 SM00862 Transcriptional regulatory protein, C terminal BC4666 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC4666 SM00387 Histidine kinase-like ATPases BC4666 SM00388 His Kinase A (phosphoacceptor) domain BC4667 SM00248 ankyrin repeats BC4672 SM00354 helix_turn _helix lactose operon repressor BC4674 SM00830 Chorismate mutase type II BC4686 SM00382 ATPases associated with a variety of cellular activities BC4686 SM00843 BC4686 BC4687 SM00646 BC4687 BC4695 SM00849 Metallo-beta-lactamase superfamily BC4703 SM00420 helix_turn_helix, Deoxyribose operon repressor BC4704 SM00363 S4 RNA-binding domain BC4708 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC4714 SM01058 CarD-like/TRCF domain BC4721 SM00852 Probable molybdopterin binding domain BC4724 SM00729 Elongator protein 3, MiaB family, Radical SAM BC4728 SM00450 Rhodanese Homology Domain BC4743 SM00382 ATPases associated with a variety of cellular activities BC4746 SM00729 Elongator protein 3, MiaB family, Radical SAM BC4748 SM00382 ATPases associated with a variety of cellular activities BC4755 SM00014 Acid phosphatase homologues BC4758 SM00852 Probable molybdopterin binding domain BC4770 SM00387 Histidine kinase-like ATPases BC4771 SM00387 Histidine kinase-like ATPases BC4771 SM00388 His Kinase A (phosphoacceptor) domain BC4779 SM00382 ATPases associated with a variety of cellular activities BC4790 SM01234 BC4790 BC4791 SM00947 Carbonic anhydrase BC4807 SM00899 BC4807 BC4809 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC4809 SM00387 Histidine kinase-like ATPases BC4809 SM00388 His Kinase A (phosphoacceptor) domain BC4810 SM00448 cheY-homologous receiver domain BC4810 SM00862 Transcriptional regulatory protein, C terminal BC4816 SM00046 Diacylglycerol kinase catalytic domain (presumed) BC4831 SM00382 ATPases associated with a variety of cellular activities BC4832 SM00342 helix_turn_helix, arabinose operon control protein BC4832 SM00871 Bacterial transcription activator, effector binding domain BC4834 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BC4835 SM00448 cheY-homologous receiver domain BC4835 SM00862 Transcriptional regulatory protein, C terminal BC4836 SM00387 Histidine kinase-like ATPases BC4839 SM00382 ATPases associated with a variety of cellular activities BC4842 SM00345 helix_turn_helix gluconate operon transcriptional repressor BC4842 SM00866 BC4842 BC4848 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC4848 SM00387 Histidine kinase-like ATPases BC4848 SM00388 His Kinase A (phosphoacceptor) domain BC4849 SM00448 cheY-homologous receiver domain BC4849 SM00862 Transcriptional regulatory protein, C terminal BC4859 SM00357 Cold shock protein domain BC4867 SM00642 Alpha-amylase domain BC4900 SM00316 Ribosomal protein S1-like RNA-binding domain BC4902 SM00344 helix_turn_helix ASNC type BC4909 SM01298 BC4909 BC4910 SM00479 BC4910 BC4928 SM00871 Bacterial transcription activator, effector binding domain BC4940 SM00382 ATPases associated with a variety of cellular activities BC4946 SM00860 SMI1 / KNR4 family BC4968 SM00422 helix_turn_helix, mercury resistance BC4971 SM00855 Phosphoglycerate mutase family BC4973 SM00729 Elongator protein 3, MiaB family, Radical SAM BC4983 SM00382 ATPases associated with a variety of cellular activities BC4987 SM00382 ATPases associated with a variety of cellular activities BC4987 SM00930 BC4987 BC4990 SM00493 BC4990 BC5001 SM00849 Metallo-beta-lactamase superfamily BC5009 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC5009 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC5024 SM00530 Helix-turn-helix XRE-family like proteins BC5028 SM00448 cheY-homologous receiver domain BC5028 SM00862 Transcriptional regulatory protein, C terminal BC5029 SM00387 Histidine kinase-like ATPases BC5029 SM00388 His Kinase A (phosphoacceptor) domain BC5034 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC5034 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC5038 SM00347 helix_turn_helix multiple antibiotic resistance protein BC5055 SM01276 BC5055 BC5062 SM00363 S4 RNA-binding domain BC5064 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BC5065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC5072 SM00382 ATPases associated with a variety of cellular activities BC5074 SM00422 helix_turn_helix, mercury resistance BC5075 SM00649 Ribosomal protein L11/L12 BC5078 SM00649 Ribosomal protein L11/L12 BC5097 SM00344 helix_turn_helix ASNC type BC5103 SM00382 ATPases associated with a variety of cellular activities BC5107 SM00448 cheY-homologous receiver domain BC5107 SM00862 Transcriptional regulatory protein, C terminal BC5110 SM00382 ATPases associated with a variety of cellular activities BC5129 SM00316 Ribosomal protein S1-like RNA-binding domain BC5129 SM00357 Cold shock protein domain BC5129 SM00955 BC5129 BC5135 SM01192 BC5135 BC5135 SM01193 BC5135 BC5140 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BC5160 SM00028 Tetratricopeptide repeats BC5168 SM00487 DEAD-like helicases superfamily BC5168 SM00490 helicase superfamily c-terminal domain BC5171 SM00422 helix_turn_helix, mercury resistance BC5173 SM00530 Helix-turn-helix XRE-family like proteins BC5176 SM00422 helix_turn_helix, mercury resistance BC5178 SM00382 ATPases associated with a variety of cellular activities BC5182 SM00382 ATPases associated with a variety of cellular activities BC5184 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BC5184 SM00245 tail specific protease BC5186 SM00382 ATPases associated with a variety of cellular activities BC5188 SM00937 BC5188 BC5189 SM00957 SecA DEAD-like domain BC5189 SM00958 SecA preprotein cross-linking domain BC5191 SM00357 Cold shock protein domain BC5193 SM00487 DEAD-like helicases superfamily BC5193 SM00490 helicase superfamily c-terminal domain BC5195 SM01321 BC5195 BC5202 SM00984 UDP binding domain BC5205 SM00382 ATPases associated with a variety of cellular activities BC5206 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BC5234 SM00287 Bacterial SH3 domain homologues BC5239 SM00287 Bacterial SH3 domain homologues BC5245 SM00487 DEAD-like helicases superfamily BC5245 SM00490 helicase superfamily c-terminal domain BC5254 SM00382 ATPases associated with a variety of cellular activities BC5256 SM00530 Helix-turn-helix XRE-family like proteins BC5261 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC5261 SM00387 Histidine kinase-like ATPases BC5261 SM00388 His Kinase A (phosphoacceptor) domain BC5262 SM00448 cheY-homologous receiver domain BC5262 SM00862 Transcriptional regulatory protein, C terminal BC5285 SM00382 ATPases associated with a variety of cellular activities BC5286 SM00850 LytTr DNA-binding domain BC5302 SM00052 Putative diguanylate phosphodiesterase BC5302 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BC5302 SM00091 PAS domain BC5302 SM00267 diguanylate cyclase BC5306 SM00382 ATPases associated with a variety of cellular activities BC5319 SM00226 Low molecular weight phosphatase family BC5322 SM00903 Flavin reductase like domain BC5329 SM00937 BC5329 BC5332 SM00357 Cold shock protein domain BC5332 SM00382 ATPases associated with a variety of cellular activities BC5332 SM00959 Rho termination factor, N-terminal domain BC5336 SM00448 cheY-homologous receiver domain BC5346 SM00155 Phospholipase D. Active site motifs. BC5350 SM00530 Helix-turn-helix XRE-family like proteins BC5352 SM00421 helix_turn_helix, Lux Regulon BC5352 SM00448 cheY-homologous receiver domain BC5355 SM00382 ATPases associated with a variety of cellular activities BC5364 SM00836 DALR anticodon binding domain BC5364 SM01016 Arginyl tRNA synthetase N terminal dom BC5373 SM00422 helix_turn_helix, mercury resistance BC5379 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BC5381 SM00382 ATPases associated with a variety of cellular activities BC5389 SM00936 Penicillin-binding protein 5, C-terminal domain BC5398 SM00986 Uracil DNA glycosylase superfamily BC5398 SM00987 UreE urease accessory protein, C-terminal domain BC5400 SM00382 ATPases associated with a variety of cellular activities BC5402 SM00354 helix_turn _helix lactose operon repressor BC5409 SM00100 Cyclic nucleotide-monophosphate binding domain BC5411 SM00421 helix_turn_helix, Lux Regulon BC5411 SM00448 cheY-homologous receiver domain BC5412 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BC5414 SM00267 diguanylate cyclase BC5417 SM00448 cheY-homologous receiver domain BC5417 SM00850 LytTr DNA-binding domain BC5424 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BC5433 SM00382 ATPases associated with a variety of cellular activities BC5440 SM00448 cheY-homologous receiver domain BC5440 SM00850 LytTr DNA-binding domain BC5441 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BC5441 SM00387 Histidine kinase-like ATPases BC5451 SM00487 DEAD-like helicases superfamily BC5451 SM00490 helicase superfamily c-terminal domain BC5452 SM01240 BC5452 BC5455 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BC5455 SM00387 Histidine kinase-like ATPases BC5455 SM00388 His Kinase A (phosphoacceptor) domain BC5458 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BC5462 SM00091 PAS domain BC5462 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BC5462 SM00387 Histidine kinase-like ATPases BC5462 SM00388 His Kinase A (phosphoacceptor) domain BC5463 SM00448 cheY-homologous receiver domain BC5463 SM00862 Transcriptional regulatory protein, C terminal BC5468 SM00788 Adenylosuccinate synthetase BC5472 SM00267 diguanylate cyclase BC5481 SM00470 ParB-like nuclease domain BC5483 SM00470 ParB-like nuclease domain BC5485 SM01228 BC5485 BC5487 SM00393 Putative single-stranded nucleic acids-binding domain BC5487 SM01245 BC5487 BCp0007 SM00433 TopoisomeraseII