locus-tag	class	description
BF35_RS00030	PF00892	EamA-like transporter family
BF35_RS00180	PF00561	alpha/beta hydrolase fold
BF35_RS00185	PF00107	Zinc-binding dehydrogenase
BF35_RS00185	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS00190	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS00190	PF00155	Aminotransferase class I and II
BF35_RS00195	PF00892	EamA-like transporter family
BF35_RS00200	PF00308	Bacterial dnaA  protein
BF35_RS00200	PF08299	Bacterial dnaA protein helix-turn-helix
BF35_RS00200	PF11638	DnaA N-terminal domain
BF35_RS00210	PF03714	Bacterial pullanase-associated domain
BF35_RS00210	PF00128	Alpha amylase, catalytic domain
BF35_RS00210	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
BF35_RS00215	PF01569	PAP2 superfamily
BF35_RS00230	PF13419	Haloacid dehalogenase-like hydrolase
BF35_RS00255	PF01266	FAD dependent oxidoreductase
BF35_RS00290	PF01541	GIY-YIG catalytic domain
BF35_RS00300	PF02673	Bacitracin resistance protein BacA
BF35_RS00315	PF12867	DinB superfamily
BF35_RS00325	PF08000	Bacterial PH domain
BF35_RS00330	PF01734	Patatin-like phospholipase
BF35_RS00355	PF09234	Domain of unknown function (DUF1963)
BF35_RS00375	PF12706	Beta-lactamase superfamily domain
BF35_RS00385	PF00293	NUDIX domain
BF35_RS00390	PF02768	DNA polymerase III beta subunit, C-terminal domain
BF35_RS00390	PF02767	DNA polymerase III beta subunit, central domain
BF35_RS00390	PF00712	DNA polymerase III beta subunit, N-terminal domain
BF35_RS00395	PF09297	NADH pyrophosphatase zinc ribbon domain
BF35_RS00395	PF00293	NUDIX domain
BF35_RS00410	PF07690	Major Facilitator Superfamily
BF35_RS00420	PF00144	Beta-lactamase
BF35_RS00445	PF01270	Glycosyl hydrolases family 8
BF35_RS00450	PF00892	EamA-like transporter family
BF35_RS00455	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS00455	PF00155	Aminotransferase class I and II
BF35_RS00470	PF03009	Glycerophosphoryl diester phosphodiesterase family
BF35_RS00485	PF07690	Major Facilitator Superfamily
BF35_RS00495	PF01965	DJ-1/PfpI family
BF35_RS00550	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS00550	PF08361	MAATS-type transcriptional repressor, C-terminal region
BF35_RS00555	PF03793	PASTA domain
BF35_RS00555	PF03717	Penicillin-binding Protein dimerisation domain
BF35_RS00555	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS00560	PF01569	PAP2 superfamily
BF35_RS00565	PF00107	Zinc-binding dehydrogenase
BF35_RS00565	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS00570	PF04229	GrpB protein
BF35_RS00580	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS00580	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS00590	PF12558	ATP-binding cassette cobalt transporter
BF35_RS00590	PF00005	ABC transporter
BF35_RS00595	PF07155	ECF-type riboflavin transporter, S component
BF35_RS00600	PF01177	Asp/Glu/Hydantoin racemase
BF35_RS00605	PF00201	UDP-glucoronosyl and UDP-glucosyl transferase
BF35_RS00610	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS00610	PF00989	PAS fold
BF35_RS00610	PF13188	PAS domain
BF35_RS00610	PF13426	PAS domain
BF35_RS00610	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS00625	PF00067	Cytochrome P450
BF35_RS00635	PF07561	Domain of Unknown Function (DUF1540)
BF35_RS00640	PF00132	Bacterial transferase hexapeptide (six repeats)
BF35_RS00650	PF00067	Cytochrome P450
BF35_RS00690	PF14873	N-terminal domain of BNR-repeat neuraminidase
BF35_RS00690	PF13859	BNR repeat-like domain
BF35_RS00695	PF01510	N-acetylmuramoyl-L-alanine amidase
BF35_RS00760	PF00574	Clp protease
BF35_RS00770	PF03354	Phage Terminase 
BF35_RS00815	PF00082	Subtilase family
BF35_RS00830	PF00589	Phage integrase family
BF35_RS00890	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin
BF35_RS00890	PF18277	AbrB C-terminal domain
BF35_RS00900	PF01695	IstB-like ATP binding protein
BF35_RS00945	PF14659	Phage integrase, N-terminal SAM-like domain
BF35_RS00945	PF00589	Phage integrase family
BF35_RS00965	PF03070	TENA/THI-4/PQQC family
BF35_RS00970	PF01820	D-ala D-ala ligase N-terminus
BF35_RS00970	PF07478	D-ala D-ala ligase C-terminus
BF35_RS00975	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS00975	PF00155	Aminotransferase class I and II
BF35_RS00980	PF01842	ACT domain
BF35_RS00980	PF00742	Homoserine dehydrogenase
BF35_RS00980	PF03447	Homoserine dehydrogenase, NAD binding domain
BF35_RS01000	PF02687	FtsX-like permease family
BF35_RS01005	PF00005	ABC transporter
BF35_RS01020	PF00005	ABC transporter
BF35_RS01020	PF12848	ABC transporter
BF35_RS01030	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS01035	PF00072	Response regulator receiver domain
BF35_RS01035	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS01040	PF03069	Acetamidase/Formamidase family
BF35_RS01045	PF07486	Cell Wall Hydrolase
BF35_RS01050	PF01921	tRNA synthetases class I (K)
BF35_RS01060	PF08450	SMP-30/Gluconolactonase/LRE-like region
BF35_RS01070	PF02875	Mur ligase family, glutamate ligase domain
BF35_RS01070	PF01225	Mur ligase family, catalytic domain
BF35_RS01070	PF08245	Mur ligase middle domain
BF35_RS01075	PF08241	Methyltransferase domain
BF35_RS01080	PF04239	Protein of unknown function (DUF421)
BF35_RS01105	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
BF35_RS01105	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
BF35_RS01110	PF00155	Aminotransferase class I and II
BF35_RS01110	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS01125	PF12833	Helix-turn-helix domain
BF35_RS01145	PF13847	Methyltransferase domain
BF35_RS01165	PF07690	Major Facilitator Superfamily
BF35_RS01170	PF09278	MerR, DNA binding
BF35_RS01170	PF00376	MerR family regulatory protein
BF35_RS01175	PF00144	Beta-lactamase
BF35_RS01190	PF17755	UvrA DNA-binding domain
BF35_RS01190	PF00005	ABC transporter
BF35_RS01190	PF17760	UvrA interaction domain
BF35_RS01205	PF07504	Fungalysin/Thermolysin Propeptide Motif
BF35_RS01205	PF03413	Peptidase propeptide and YPEB domain
BF35_RS01205	PF02868	Thermolysin metallopeptidase, alpha-helical domain
BF35_RS01205	PF01447	Thermolysin metallopeptidase, catalytic domain
BF35_RS01225	PF01048	Phosphorylase superfamily
BF35_RS01235	PF01966	HD domain
BF35_RS01240	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS01240	PF00072	Response regulator receiver domain
BF35_RS01245	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS01245	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS01250	PF00768	D-alanyl-D-alanine carboxypeptidase
BF35_RS01250	PF07943	Penicillin-binding protein 5, C-terminal domain
BF35_RS01255	PF05163	DinB family
BF35_RS01260	PF00485	Phosphoribulokinase / Uridine kinase family
BF35_RS01275	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS01275	PF00501	AMP-binding enzyme
BF35_RS01275	PF16177	Acetyl-coenzyme A synthetase N-terminus
BF35_RS01280	PF01039	Carboxyl transferase domain
BF35_RS01285	PF00378	Enoyl-CoA hydratase/isomerase
BF35_RS01290	PF00682	HMGL-like
BF35_RS01295	PF00364	Biotin-requiring enzyme
BF35_RS01300	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BF35_RS01300	PF02785	Biotin carboxylase C-terminal domain
BF35_RS01300	PF00289	Biotin carboxylase, N-terminal domain
BF35_RS01305	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
BF35_RS01305	PF02770	Acyl-CoA dehydrogenase, middle domain
BF35_RS01305	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
BF35_RS01320	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS01320	PF08359	YsiA-like protein, C-terminal region
BF35_RS01330	PF00005	ABC transporter
BF35_RS01345	PF00581	Rhodanese-like domain
BF35_RS01350	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS01360	PF03009	Glycerophosphoryl diester phosphodiesterase family
BF35_RS01375	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS01375	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS01380	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS01380	PF00072	Response regulator receiver domain
BF35_RS01390	PF00144	Beta-lactamase
BF35_RS01410	PF00817	impB/mucB/samB family
BF35_RS01410	PF11799	impB/mucB/samB family C-terminal domain
BF35_RS01410	PF11798	IMS family HHH motif
BF35_RS01425	PF00672	HAMP domain
BF35_RS01425	PF02743	Cache domain
BF35_RS01425	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS01435	PF13302	Acetyltransferase (GNAT) domain
BF35_RS01450	PF00990	Diguanylate cyclase, GGDEF domain
BF35_RS01450	PF03707	Bacterial signalling protein N terminal repeat
BF35_RS01450	PF00563	EAL domain
BF35_RS01460	PF00395	S-layer homology domain
BF35_RS01460	PF01520	N-acetylmuramoyl-L-alanine amidase
BF35_RS01465	PF12389	Camelysin metallo-endopeptidase
BF35_RS01470	PF05922	Peptidase inhibitor I9
BF35_RS01470	PF13860	FlgD Ig-like domain
BF35_RS01470	PF02225	PA domain
BF35_RS01470	PF00082	Subtilase family
BF35_RS01475	PF00196	Bacterial regulatory proteins, luxR family
BF35_RS01475	PF00072	Response regulator receiver domain
BF35_RS01480	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS01480	PF07730	Histidine kinase
BF35_RS01480	PF13492	GAF domain
BF35_RS01485	PF01209	ubiE/COQ5 methyltransferase family
BF35_RS01525	PF16123	Hydroxyacylglutathione hydrolase C-terminus
BF35_RS01525	PF00753	Metallo-beta-lactamase superfamily
BF35_RS01535	PF01757	Acyltransferase family
BF35_RS01540	PF07486	Cell Wall Hydrolase
BF35_RS01555	PF04962	KduI/IolB family
BF35_RS01560	PF01116	Fructose-bisphosphate aldolase class-II
BF35_RS01565	PF01261	Xylose isomerase-like TIM barrel
BF35_RS01570	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BF35_RS01570	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BF35_RS01570	PF00205	Thiamine pyrophosphate enzyme, central domain
BF35_RS01575	PF00171	Aldehyde dehydrogenase family
BF35_RS01580	PF00294	pfkB family carbohydrate kinase
BF35_RS01585	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
BF35_RS01585	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
BF35_RS01590	PF07690	Major Facilitator Superfamily
BF35_RS01595	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS01600	PF01569	PAP2 superfamily
BF35_RS01610	PF03717	Penicillin-binding Protein dimerisation domain
BF35_RS01610	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS01615	PF03717	Penicillin-binding Protein dimerisation domain
BF35_RS01615	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS01625	PF04542	Sigma-70 region 2 
BF35_RS01625	PF08281	Sigma-70, region 4
BF35_RS01630	PF05223	NTF2-like N-terminal transpeptidase domain
BF35_RS01630	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS01630	PF03717	Penicillin-binding Protein dimerisation domain
BF35_RS01650	PF00132	Bacterial transferase hexapeptide (six repeats)
BF35_RS01660	PF01546	Peptidase family M20/M25/M40
BF35_RS01660	PF07687	Peptidase dimerisation domain
BF35_RS01675	PF14171	Toxin SpoIISA, type II toxin-antitoxin system
BF35_RS01680	PF00300	Histidine phosphatase superfamily (branch 1)
BF35_RS01685	PF01047	MarR family
BF35_RS01690	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BF35_RS01690	PF00205	Thiamine pyrophosphate enzyme, central domain
BF35_RS01690	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BF35_RS01695	PF08241	Methyltransferase domain
BF35_RS01705	PF03848	Tellurite resistance protein TehB
BF35_RS01705	PF09313	Domain of unknown function (DUF1971)
BF35_RS01710	PF00005	ABC transporter
BF35_RS01710	PF12704	MacB-like periplasmic core domain
BF35_RS01710	PF02687	FtsX-like permease family
BF35_RS01725	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS01725	PF17932	Tetracyclin repressor-like, C-terminal domain
BF35_RS01750	PF00271	Helicase conserved C-terminal domain
BF35_RS01750	PF00270	DEAD/DEAH box helicase
BF35_RS01765	PF12323	Helix-turn-helix domain
BF35_RS01765	PF07282	Putative transposase DNA-binding domain
BF35_RS01765	PF01385	Probable transposase
BF35_RS01770	PF00753	Metallo-beta-lactamase superfamily
BF35_RS01770	PF16123	Hydroxyacylglutathione hydrolase C-terminus
BF35_RS01785	PF07690	Major Facilitator Superfamily
BF35_RS01790	PF01047	MarR family
BF35_RS01795	PF00291	Pyridoxal-phosphate dependent enzyme
BF35_RS01800	PF00266	Aminotransferase class-V
BF35_RS01805	PF02660	Glycerol-3-phosphate acyltransferase
BF35_RS01810	PF01869	BadF/BadG/BcrA/BcrD ATPase family
BF35_RS01815	PF03702	Anhydro-N-acetylmuramic acid kinase
BF35_RS01825	PF02378	Phosphotransferase system, EIIC 
BF35_RS01835	PF02638	Glycosyl hydrolase-like 10
BF35_RS01860	PF04542	Sigma-70 region 2 
BF35_RS01860	PF08281	Sigma-70, region 4
BF35_RS01860	PF12680	SnoaL-like domain
BF35_RS01865	PF00890	FAD binding domain
BF35_RS01875	PF04607	Region found in RelA / SpoT proteins
BF35_RS01875	PF02824	TGS domain
BF35_RS01875	PF13291	ACT domain
BF35_RS01905	PF01381	Helix-turn-helix
BF35_RS01905	PF07883	Cupin domain
BF35_RS01910	PF01810	LysE type translocator
BF35_RS01925	PF00664	ABC transporter transmembrane region
BF35_RS01925	PF00005	ABC transporter
BF35_RS01930	PF00005	ABC transporter
BF35_RS01930	PF00664	ABC transporter transmembrane region
BF35_RS01945	PF03473	MOSC domain
BF35_RS01945	PF03475	3-alpha domain
BF35_RS01950	PF03466	LysR substrate binding domain
BF35_RS01950	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS01965	PF01118	Semialdehyde dehydrogenase, NAD binding domain
BF35_RS01965	PF02774	Semialdehyde dehydrogenase, dimerisation domain
BF35_RS01970	PF03466	LysR substrate binding domain
BF35_RS01970	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS02000	PF00313	'Cold-shock' DNA-binding domain
BF35_RS02010	PF13302	Acetyltransferase (GNAT) domain
BF35_RS02020	PF01593	Flavin containing amine oxidoreductase
BF35_RS02025	PF00561	alpha/beta hydrolase fold
BF35_RS02050	PF00583	Acetyltransferase (GNAT) family
BF35_RS02060	PF00302	Chloramphenicol acetyltransferase
BF35_RS02070	PF03176	MMPL family
BF35_RS02080	PF00753	Metallo-beta-lactamase superfamily
BF35_RS02095	PF00027	Cyclic nucleotide-binding domain
BF35_RS02095	PF13545	Crp-like helix-turn-helix domain
BF35_RS02130	PF13649	Methyltransferase domain
BF35_RS02140	PF00205	Thiamine pyrophosphate enzyme, central domain
BF35_RS02140	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BF35_RS02140	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BF35_RS02155	PF07690	Major Facilitator Superfamily
BF35_RS02165	PF00005	ABC transporter
BF35_RS02170	PF11188	Protein of unknown function (DUF2975)
BF35_RS02175	PF02824	TGS domain
BF35_RS02175	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BF35_RS02175	PF03129	Anticodon binding domain
BF35_RS02175	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BF35_RS02180	PF01479	S4 domain
BF35_RS02180	PF00849	RNA pseudouridylate synthase
BF35_RS02185	PF16291	Domain of unknown function (DUF4937
BF35_RS02205	PF01235	Sodium:alanine symporter family
BF35_RS02210	PF00082	Subtilase family
BF35_RS02215	PF05163	DinB family
BF35_RS02225	PF00216	Bacterial DNA-binding protein
BF35_RS02240	PF07690	Major Facilitator Superfamily
BF35_RS02245	PF03621	MbtH-like protein
BF35_RS02250	PF00501	AMP-binding enzyme
BF35_RS02250	PF00668	Condensation domain
BF35_RS02250	PF00550	Phosphopantetheine attachment site
BF35_RS02250	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS02250	PF00975	Thioesterase domain
BF35_RS02255	PF00550	Phosphopantetheine attachment site
BF35_RS02255	PF00857	Isochorismatase family
BF35_RS02260	PF00501	AMP-binding enzyme
BF35_RS02260	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS02265	PF00425	chorismate binding enzyme
BF35_RS02270	PF00106	short chain dehydrogenase
BF35_RS02275	PF07690	Major Facilitator Superfamily
BF35_RS02290	PF01022	Bacterial regulatory protein, arsR family
BF35_RS02300	PF13476	AAA domain
BF35_RS02305	PF00149	Calcineurin-like phosphoesterase
BF35_RS02305	PF12320	Type 5 capsule protein repressor C-terminal domain
BF35_RS02310	PF10763	Protein of unknown function (DUF2584)
BF35_RS02320	PF00378	Enoyl-CoA hydratase/isomerase
BF35_RS02325	PF01810	LysE type translocator
BF35_RS02330	PF00171	Aldehyde dehydrogenase family
BF35_RS02335	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
BF35_RS02335	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
BF35_RS02340	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
BF35_RS02340	PF02770	Acyl-CoA dehydrogenase, middle domain
BF35_RS02340	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
BF35_RS02350	PF03972	MmgE/PrpD family
BF35_RS02355	PF00285	Citrate synthase, C-terminal domain
BF35_RS02360	PF07690	Major Facilitator Superfamily
BF35_RS02370	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS02370	PF00912	Transglycosylase
BF35_RS02405	PF10676	Spore germination protein gerPA/gerPF
BF35_RS02460	PF04542	Sigma-70 region 2 
BF35_RS02460	PF08281	Sigma-70, region 4
BF35_RS02510	PF00085	Thioredoxin
BF35_RS02515	PF01545	Cation efflux family
BF35_RS02515	PF16916	Dimerisation domain of Zinc Transporter
BF35_RS02520	PF01569	PAP2 superfamily
BF35_RS02525	PF07070	SpoOM protein
BF35_RS02530	PF00069	Protein kinase domain
BF35_RS02530	PF08239	Bacterial SH3 domain
BF35_RS02540	PF14162	YozD-like protein
BF35_RS02555	PF06855	YozE SAM-like fold
BF35_RS02560	PF14122	YokU-like protein, putative antitoxin
BF35_RS02565	PF12544	Lysine-2,3-aminomutase 
BF35_RS02570	PF13426	PAS domain
BF35_RS02570	PF02954	Bacterial regulatory protein, Fis family
BF35_RS02570	PF00158	Sigma-54 interaction domain
BF35_RS02575	PF00583	Acetyltransferase (GNAT) family
BF35_RS02580	PF01546	Peptidase family M20/M25/M40
BF35_RS02580	PF07687	Peptidase dimerisation domain
BF35_RS02585	PF01144	Coenzyme A transferase
BF35_RS02590	PF01144	Coenzyme A transferase
BF35_RS02595	PF00202	Aminotransferase class-III
BF35_RS02605	PF09385	Histidine kinase N terminal
BF35_RS02610	PF07997	Protein of unknown function (DUF1694)
BF35_RS02615	PF00171	Aldehyde dehydrogenase family
BF35_RS02620	PF00571	CBS domain
BF35_RS02620	PF03471	Transporter associated domain
BF35_RS02620	PF01595	Cyclin M transmembrane N-terminal domain
BF35_RS02650	PF13520	Amino acid permease
BF35_RS02655	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS02660	PF00005	ABC transporter
BF35_RS02660	PF00571	CBS domain
BF35_RS02675	PF03358	NADPH-dependent FMN reductase
BF35_RS02690	PF10924	Protein of unknown function (DUF2711)
BF35_RS02695	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
BF35_RS02695	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
BF35_RS02710	PF00144	Beta-lactamase
BF35_RS02725	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS02725	PF00107	Zinc-binding dehydrogenase
BF35_RS02730	PF02685	Glucokinase
BF35_RS02730	PF01418	Helix-turn-helix domain, rpiR family
BF35_RS02730	PF01380	SIS domain
BF35_RS02735	PF01380	SIS domain
BF35_RS02735	PF01418	Helix-turn-helix domain, rpiR family
BF35_RS02740	PF00072	Response regulator receiver domain
BF35_RS02740	PF00196	Bacterial regulatory proteins, luxR family
BF35_RS02745	PF07730	Histidine kinase
BF35_RS02745	PF13185	GAF domain
BF35_RS02750	PF00924	Mechanosensitive ion channel
BF35_RS02755	PF00011	Hsp20/alpha crystallin family
BF35_RS02760	PF00293	NUDIX domain
BF35_RS02760	PF09297	NADH pyrophosphatase zinc ribbon domain
BF35_RS02765	PF00857	Isochorismatase family
BF35_RS02775	PF00881	Nitroreductase family
BF35_RS02780	PF01063	Amino-transferase class IV
BF35_RS02785	PF01497	Periplasmic binding protein
BF35_RS02805	PF13537	Glutamine amidotransferase domain
BF35_RS02805	PF00733	Asparagine synthase
BF35_RS02810	PF00011	Hsp20/alpha crystallin family
BF35_RS02815	PF02630	SCO1/SenC
BF35_RS02825	PF02645	Uncharacterised protein, DegV family COG1307
BF35_RS02835	PF00902	Sec-independent protein translocase protein (TatC)
BF35_RS02840	PF02416	mttA/Hcf106 family
BF35_RS02845	PF03006	Haemolysin-III related
BF35_RS02850	PF01553	Acyltransferase
BF35_RS02855	PF02525	Flavodoxin-like fold
BF35_RS02860	PF03717	Penicillin-binding Protein dimerisation domain
BF35_RS02860	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS02860	PF05223	NTF2-like N-terminal transpeptidase domain
BF35_RS02865	PF00186	Dihydrofolate reductase
BF35_RS02870	PF00303	Thymidylate synthase
BF35_RS02875	PF17389	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
BF35_RS02875	PF17390	Bacterial alpha-L-rhamnosidase C-terminal domain
BF35_RS02875	PF05592	Bacterial alpha-L-rhamnosidase concanavalin-like domain
BF35_RS02875	PF08531	Alpha-L-rhamnosidase N-terminal domain
BF35_RS02880	PF00144	Beta-lactamase
BF35_RS02880	PF07930	D-aminopeptidase, domain B
BF35_RS02900	PF13419	Haloacid dehalogenase-like hydrolase
BF35_RS02905	PF14005	YpjP-like protein
BF35_RS02910	PF05975	Bacterial ABC transporter protein EcsB
BF35_RS02915	PF00005	ABC transporter
BF35_RS02930	PF00583	Acetyltransferase (GNAT) family
BF35_RS02935	PF01980	tRNA-methyltransferase O
BF35_RS02940	PF01177	Asp/Glu/Hydantoin racemase
BF35_RS02945	PF00465	Iron-containing alcohol dehydrogenase 
BF35_RS02955	PF13419	Haloacid dehalogenase-like hydrolase
BF35_RS02960	PF10997	Alternate to MurJ
BF35_RS02975	PF00209	Sodium:neurotransmitter symporter family
BF35_RS03060	PF01580	FtsK/SpoIIIE family
BF35_RS03060	PF12538	DNA transporter 
BF35_RS03080	PF00152	tRNA synthetases class II (D, K and N) 
BF35_RS03080	PF01336	OB-fold nucleic acid binding domain
BF35_RS03095	PF08264	Anticodon-binding domain of tRNA
BF35_RS03095	PF00133	tRNA synthetases class I (I, L, M and V)
BF35_RS03120	PF03485	Arginyl tRNA synthetase N terminal domain
BF35_RS03120	PF00750	tRNA synthetases class I (R)
BF35_RS03120	PF05746	DALR anticodon binding domain
BF35_RS03125	PF04445	Putative SAM-dependent methyltransferase
BF35_RS03130	PF06491	Disulphide isomerase
BF35_RS03140	PF08712	Scaffold protein Nfu/NifU N terminal
BF35_RS03140	PF13769	Virulence factor
BF35_RS03145	PF00436	Single-strand binding protein family
BF35_RS03160	PF12848	ABC transporter
BF35_RS03160	PF00005	ABC transporter
BF35_RS03160	PF16326	ABC transporter C-terminal domain
BF35_RS03165	PF01966	HD domain
BF35_RS03180	PF01510	N-acetylmuramoyl-L-alanine amidase
BF35_RS03195	PF04232	Stage V sporulation protein S (SpoVS)
BF35_RS03220	PF01814	Hemerythrin HHE cation binding domain
BF35_RS03220	PF04405	Domain of Unknown function (DUF542)  
BF35_RS03225	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS03225	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
BF35_RS03225	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
BF35_RS03225	PF04324	BFD-like [2Fe-2S] binding domain
BF35_RS03225	PF18267	Rubredoxin NAD+ reductase C-terminal domain
BF35_RS03230	PF00355	Rieske [2Fe-2S] domain
BF35_RS03235	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BF35_RS03240	PF01903	CbiX
BF35_RS03265	PF07690	Major Facilitator Superfamily
BF35_RS03275	PF02391	MoaE protein
BF35_RS03280	PF00994	Probable molybdopterin binding domain
BF35_RS03280	PF03454	MoeA C-terminal region (domain IV)
BF35_RS03280	PF03453	MoeA N-terminal region (domain I and II)
BF35_RS03285	PF00899	ThiF family
BF35_RS03290	PF06463	Molybdenum Cofactor Synthesis C
BF35_RS03290	PF04055	Radical SAM superfamily
BF35_RS03295	PF00027	Cyclic nucleotide-binding domain
BF35_RS03295	PF00325	Bacterial regulatory proteins, crp family
BF35_RS03300	PF02665	Nitrate reductase gamma subunit
BF35_RS03305	PF02613	Nitrate reductase delta subunit
BF35_RS03310	PF13247	4Fe-4S dicluster domain
BF35_RS03310	PF14711	Respiratory nitrate reductase beta C-terminal
BF35_RS03315	PF01568	Molydopterin dinucleotide binding domain
BF35_RS03315	PF14710	Respiratory nitrate reductase alpha N-terminal
BF35_RS03315	PF00384	Molybdopterin oxidoreductase
BF35_RS03330	PF07726	ATPase family associated with various cellular activities (AAA)
BF35_RS03330	PF17863	AAA lid domain
BF35_RS03340	PF11992	Domain of unknown function (DUF3488)
BF35_RS03340	PF01841	Transglutaminase-like superfamily
BF35_RS03340	PF13559	Domain of unknown function (DUF4129)
BF35_RS03345	PF00255	Glutathione peroxidase
BF35_RS03355	PF01613	Flavin reductase like domain
BF35_RS03355	PF00258	Flavodoxin
BF35_RS03375	PF08281	Sigma-70, region 4
BF35_RS03375	PF04542	Sigma-70 region 2 
BF35_RS03380	PF00107	Zinc-binding dehydrogenase
BF35_RS03380	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS03390	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS03395	PF01261	Xylose isomerase-like TIM barrel
BF35_RS03400	PF00270	DEAD/DEAH box helicase
BF35_RS03400	PF00271	Helicase conserved C-terminal domain
BF35_RS03410	PF01268	Formate--tetrahydrofolate ligase
BF35_RS03415	PF01209	ubiE/COQ5 methyltransferase family
BF35_RS03440	PF09579	Sporulation protein YtfJ (Spore_YtfJ)
BF35_RS03480	PF00583	Acetyltransferase (GNAT) family
BF35_RS03510	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS03510	PF00155	Aminotransferase class I and II
BF35_RS03515	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS03515	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF35_RS03520	PF00201	UDP-glucoronosyl and UDP-glucosyl transferase
BF35_RS03535	PF13847	Methyltransferase domain
BF35_RS03540	PF01168	Alanine racemase, N-terminal domain
BF35_RS03540	PF00842	Alanine racemase, C-terminal domain
BF35_RS03555	PF00300	Histidine phosphatase superfamily (branch 1)
BF35_RS03560	PF01361	Tautomerase enzyme
BF35_RS03570	PF00682	HMGL-like
BF35_RS03570	PF07836	DmpG-like communication domain
BF35_RS03575	PF01118	Semialdehyde dehydrogenase, NAD binding domain
BF35_RS03575	PF09290	Prokaryotic acetaldehyde dehydrogenase, dimerisation
BF35_RS03580	PF01557	Fumarylacetoacetate (FAA) hydrolase family
BF35_RS03585	PF00171	Aldehyde dehydrogenase family
BF35_RS03590	PF01042	Endoribonuclease L-PSP
BF35_RS03600	PF06052	3-hydroxyanthranilic acid dioxygenase
BF35_RS03605	PF06574	FAD synthetase
BF35_RS03615	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
BF35_RS03615	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
BF35_RS03620	PF01145	SPFH domain / Band 7 family
BF35_RS03630	PF07690	Major Facilitator Superfamily
BF35_RS03635	PF01425	Amidase
BF35_RS03645	PF02557	D-alanyl-D-alanine carboxypeptidase
BF35_RS03655	PF07454	Stage II sporulation protein P (SpoIIP)
BF35_RS03675	PF01588	Putative tRNA binding domain
BF35_RS03680	PF05525	Branched-chain amino acid transport protein
BF35_RS03685	PF00665	Integrase core domain
BF35_RS03685	PF13276	HTH-like domain
BF35_RS03685	PF13333	Integrase core domain
BF35_RS03705	PF01595	Cyclin M transmembrane N-terminal domain
BF35_RS03705	PF00571	CBS domain
BF35_RS03705	PF03471	Transporter associated domain
BF35_RS03710	PF04306	Protein of unknown function (DUF456)
BF35_RS03715	PF13460	NAD(P)H-binding 
BF35_RS03730	PF13396	Phospholipase_D-nuclease N-terminal
BF35_RS03730	PF13091	PLD-like domain
BF35_RS03735	PF03061	Thioesterase superfamily
BF35_RS03740	PF09323	Domain of unknown function (DUF1980)
BF35_RS03745	PF03773	Predicted permease
BF35_RS03755	PF01943	Polysaccharide biosynthesis protein
BF35_RS03755	PF14667	Polysaccharide biosynthesis C-terminal domain
BF35_RS03760	PF09335	SNARE associated Golgi protein
BF35_RS03765	PF00293	NUDIX domain
BF35_RS03770	PF08757	CotH kinase protein
BF35_RS03780	PF00300	Histidine phosphatase superfamily (branch 1)
BF35_RS03790	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS03795	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS03805	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
BF35_RS03805	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
BF35_RS03810	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
BF35_RS03815	PF13460	NAD(P)H-binding 
BF35_RS03825	PF09223	ZinT (YodA) periplasmic lipocalin-like zinc-recruitment
BF35_RS03825	PF01297	Zinc-uptake complex component A periplasmic
BF35_RS03830	PF00583	Acetyltransferase (GNAT) family
BF35_RS03835	PF02492	CobW/HypB/UreG, nucleotide-binding domain
BF35_RS03835	PF07683	Cobalamin synthesis protein cobW C-terminal domain
BF35_RS03840	PF00248	Aldo/keto reductase family
BF35_RS03845	PF13302	Acetyltransferase (GNAT) domain
BF35_RS03850	PF01593	Flavin containing amine oxidoreductase
BF35_RS03860	PF00296	Luciferase-like monooxygenase
BF35_RS03875	PF00210	Ferritin-like domain
BF35_RS03895	PF02743	Cache domain
BF35_RS03895	PF00672	HAMP domain
BF35_RS03895	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS03900	PF03193	RsgA GTPase
BF35_RS03920	PF07690	Major Facilitator Superfamily
BF35_RS03925	PF00248	Aldo/keto reductase family
BF35_RS03930	PF01022	Bacterial regulatory protein, arsR family
BF35_RS03935	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
BF35_RS03935	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
BF35_RS03940	PF00082	Subtilase family
BF35_RS03945	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin
BF35_RS03945	PF18277	AbrB C-terminal domain
BF35_RS03950	PF02687	FtsX-like permease family
BF35_RS03955	PF02540	NAD synthase
BF35_RS03960	PF00293	NUDIX domain
BF35_RS03960	PF13344	Haloacid dehalogenase-like hydrolase
BF35_RS03985	PF01734	Patatin-like phospholipase
BF35_RS03995	PF00155	Aminotransferase class I and II
BF35_RS03995	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS04000	PF01810	LysE type translocator
BF35_RS04005	PF07690	Major Facilitator Superfamily
BF35_RS04010	PF00269	Small, acid-soluble spore proteins, alpha/beta type
BF35_RS04015	PF01261	Xylose isomerase-like TIM barrel
BF35_RS04030	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS04030	PF00501	AMP-binding enzyme
BF35_RS04035	PF06276	Ferric iron reductase FhuF-like transporter
BF35_RS04035	PF04183	IucA / IucC family
BF35_RS04040	PF04183	IucA / IucC family
BF35_RS04040	PF06276	Ferric iron reductase FhuF-like transporter
BF35_RS04045	PF00583	Acetyltransferase (GNAT) family
BF35_RS04050	PF02308	MgtC family
BF35_RS04060	PF01522	Polysaccharide deacetylase
BF35_RS04065	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS04065	PF00989	PAS fold
BF35_RS04065	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS04065	PF16736	Single Cache-like 
BF35_RS04070	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS04070	PF00072	Response regulator receiver domain
BF35_RS04080	PF03816	Cell envelope-related transcriptional attenuator domain
BF35_RS04095	PF00288	GHMP kinases N terminal domain
BF35_RS04095	PF08544	GHMP kinases C terminal 
BF35_RS04100	PF00291	Pyridoxal-phosphate dependent enzyme
BF35_RS04105	PF00742	Homoserine dehydrogenase
BF35_RS04105	PF03447	Homoserine dehydrogenase, NAD binding domain
BF35_RS04105	PF01842	ACT domain
BF35_RS04125	PF01522	Polysaccharide deacetylase
BF35_RS04130	PF04439	Streptomycin adenylyltransferase
BF35_RS04135	PF01596	O-methyltransferase
BF35_RS04140	PF00106	short chain dehydrogenase
BF35_RS04150	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS04150	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS04150	PF00989	PAS fold
BF35_RS04150	PF16736	Single Cache-like 
BF35_RS04155	PF00072	Response regulator receiver domain
BF35_RS04155	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS04160	PF00005	ABC transporter
BF35_RS04160	PF00664	ABC transporter transmembrane region
BF35_RS04170	PF01476	LysM domain
BF35_RS04170	PF00877	NlpC/P60 family
BF35_RS04185	PF00768	D-alanyl-D-alanine carboxypeptidase
BF35_RS04185	PF07943	Penicillin-binding protein 5, C-terminal domain
BF35_RS04190	PF02016	LD-carboxypeptidase N-terminal domain
BF35_RS04190	PF17676	LD-carboxypeptidase C-terminal domain
BF35_RS04205	PF00132	Bacterial transferase hexapeptide (six repeats)
BF35_RS04210	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
BF35_RS04215	PF00535	Glycosyl transferase family 2
BF35_RS04225	PF00005	ABC transporter
BF35_RS04225	PF00664	ABC transporter transmembrane region
BF35_RS04230	PF00664	ABC transporter transmembrane region
BF35_RS04230	PF00005	ABC transporter
BF35_RS04235	PF02322	Cytochrome bd terminal oxidase subunit II
BF35_RS04240	PF01654	Cytochrome bd terminal oxidase subunit I
BF35_RS04250	PF01047	MarR family
BF35_RS04260	PF14552	Tautomerase enzyme
BF35_RS04270	PF03466	LysR substrate binding domain
BF35_RS04270	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS04280	PF02653	Branched-chain amino acid transport system / permease component
BF35_RS04285	PF00005	ABC transporter
BF35_RS04290	PF00005	ABC transporter
BF35_RS04290	PF12399	Branched-chain amino acid ATP-binding cassette transporter
BF35_RS04305	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
BF35_RS04305	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  
BF35_RS04310	PF01575	MaoC like domain
BF35_RS04315	PF00501	AMP-binding enzyme
BF35_RS04315	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS04325	PF02492	CobW/HypB/UreG, nucleotide-binding domain
BF35_RS04325	PF07683	Cobalamin synthesis protein cobW C-terminal domain
BF35_RS04330	PF01593	Flavin containing amine oxidoreductase
BF35_RS04335	PF00056	lactate/malate dehydrogenase, NAD binding domain
BF35_RS04335	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
BF35_RS04340	PF01594	AI-2E family transporter
BF35_RS04345	PF01425	Amidase
BF35_RS04355	PF00881	Nitroreductase family
BF35_RS04360	PF01323	DSBA-like thioredoxin domain
BF35_RS04365	PF02082	Transcriptional regulator
BF35_RS04370	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS04370	PF03466	LysR substrate binding domain
BF35_RS04375	PF00892	EamA-like transporter family
BF35_RS04380	PF07987	Domain of unkown function (DUF1775)
BF35_RS04385	PF13115	YtkA-like
BF35_RS04385	PF04234	CopC domain
BF35_RS04385	PF05425	Copper resistance protein D
BF35_RS04395	PF05525	Branched-chain amino acid transport protein
BF35_RS04400	PF02525	Flavodoxin-like fold
BF35_RS04410	PF07690	Major Facilitator Superfamily
BF35_RS04420	PF01131	DNA topoisomerase
BF35_RS04420	PF01751	Toprim domain
BF35_RS04420	PF13342	C-terminal repeat of topoisomerase
BF35_RS04420	PF01396	Topoisomerase DNA binding C4 zinc finger
BF35_RS04430	PF07732	Multicopper oxidase
BF35_RS04430	PF07731	Multicopper oxidase
BF35_RS04430	PF00394	Multicopper oxidase
BF35_RS04435	PF00557	Metallopeptidase family M24
BF35_RS04435	PF05195	Aminopeptidase P, N-terminal domain
BF35_RS04440	PF05979	Bacterial protein of unknown function (DUF896)
BF35_RS04445	PF07301	Protein of unknown function (DUF1453)
BF35_RS04455	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
BF35_RS04460	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
BF35_RS04460	PF00591	Glycosyl transferase family, a/b domain
BF35_RS04460	PF02885	Glycosyl transferase family, helical bundle domain
BF35_RS04465	PF07662	Na+ dependent nucleoside transporter C-terminus
BF35_RS04465	PF01773	Na+ dependent nucleoside transporter N-terminus
BF35_RS04470	PF01791	DeoC/LacD family aldolase
BF35_RS04475	PF04198	Putative sugar-binding domain
BF35_RS04480	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS04490	PF01906	Putative heavy-metal-binding
BF35_RS04500	PF05791	Bacillus haemolytic enterotoxin (HBL)
BF35_RS04505	PF05791	Bacillus haemolytic enterotoxin (HBL)
BF35_RS04515	PF13520	Amino acid permease
BF35_RS04525	PF08546	Ketopantoate reductase PanE/ApbA C terminal
BF35_RS04525	PF02558	Ketopantoate reductase PanE/ApbA
BF35_RS04535	PF00581	Rhodanese-like domain
BF35_RS04535	PF12368	Rhodanase C-terminal
BF35_RS04535	PF17773	UPF0176 acylphosphatase like domain
BF35_RS04540	PF01566	Natural resistance-associated macrophage protein
BF35_RS04555	PF00072	Response regulator receiver domain
BF35_RS04555	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS04560	PF13302	Acetyltransferase (GNAT) domain
BF35_RS04580	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS04600	PF01979	Amidohydrolase family
BF35_RS04615	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
BF35_RS04615	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
BF35_RS04620	PF00072	Response regulator receiver domain
BF35_RS04620	PF04397	LytTr DNA-binding domain
BF35_RS04630	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
BF35_RS04635	PF07690	Major Facilitator Superfamily
BF35_RS04650	PF09587	Bacterial capsule synthesis protein PGA_cap
BF35_RS04660	PF00585	C-terminal regulatory domain of Threonine dehydratase
BF35_RS04660	PF00291	Pyridoxal-phosphate dependent enzyme
BF35_RS04665	PF00920	Dehydratase family
BF35_RS04670	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
BF35_RS04670	PF07991	Acetohydroxy acid isomeroreductase, NADPH-binding domain
BF35_RS04680	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BF35_RS04680	PF00205	Thiamine pyrophosphate enzyme, central domain
BF35_RS04680	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BF35_RS04685	PF01063	Amino-transferase class IV
BF35_RS04690	PF01625	Peptide methionine sulfoxide reductase
BF35_RS04710	PF04239	Protein of unknown function (DUF421)
BF35_RS04720	PF03422	Carbohydrate binding module (family 6)
BF35_RS04720	PF00457	Glycosyl hydrolases family 11
BF35_RS04720	PF01522	Polysaccharide deacetylase
BF35_RS04725	PF00209	Sodium:neurotransmitter symporter family
BF35_RS04730	PF14667	Polysaccharide biosynthesis C-terminal domain
BF35_RS04730	PF01943	Polysaccharide biosynthesis protein
BF35_RS04745	PF00291	Pyridoxal-phosphate dependent enzyme
BF35_RS04750	PF07690	Major Facilitator Superfamily
BF35_RS04755	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS04760	PF16360	GTP-binding GTPase Middle Region
BF35_RS04760	PF13167	GTP-binding GTPase N-terminal
BF35_RS04760	PF01926	50S ribosome-binding GTPase
BF35_RS04770	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
BF35_RS04770	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  
BF35_RS04775	PF07690	Major Facilitator Superfamily
BF35_RS04780	PF07690	Major Facilitator Superfamily
BF35_RS04790	PF03976	Polyphosphate kinase 2 (PPK2)
BF35_RS04805	PF07690	Major Facilitator Superfamily
BF35_RS04815	PF00395	S-layer homology domain
BF35_RS04815	PF02368	Bacterial Ig-like domain (group 2)
BF35_RS04820	PF00293	NUDIX domain
BF35_RS04825	PF14158	YndJ-like protein
BF35_RS04845	PF00696	Amino acid kinase family
BF35_RS04845	PF13840	ACT domain 
BF35_RS04855	PF01381	Helix-turn-helix
BF35_RS04860	PF03590	Aspartate-ammonia ligase
BF35_RS04880	PF04434	SWIM zinc finger
BF35_RS04880	PF00176	SNF2 family N-terminal domain
BF35_RS04880	PF00271	Helicase conserved C-terminal domain
BF35_RS04885	PF08664	YcbB domain
BF35_RS04885	PF00072	Response regulator receiver domain
BF35_RS04890	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS04895	PF03949	Malic enzyme, NAD binding domain
BF35_RS04895	PF00390	Malic enzyme, N-terminal domain
BF35_RS04900	PF00206	Lyase
BF35_RS04900	PF10415	Fumarase C C-terminus
BF35_RS04905	PF00375	Sodium:dicarboxylate symporter family
BF35_RS04910	PF00696	Amino acid kinase family
BF35_RS04915	PF13091	PLD-like domain
BF35_RS04930	PF00005	ABC transporter
BF35_RS04935	PF13492	GAF domain
BF35_RS04935	PF13185	GAF domain
BF35_RS04935	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS04935	PF07730	Histidine kinase
BF35_RS04940	PF00072	Response regulator receiver domain
BF35_RS04940	PF00196	Bacterial regulatory proteins, luxR family
BF35_RS04965	PF04286	Protein of unknown function (DUF445)
BF35_RS04970	PF00291	Pyridoxal-phosphate dependent enzyme
BF35_RS04985	PF00578	AhpC/TSA family
BF35_RS04990	PF02683	Cytochrome C biogenesis protein transmembrane region
BF35_RS05010	PF03575	Peptidase family S51
BF35_RS05015	PF01554	MatE
BF35_RS05025	PF00753	Metallo-beta-lactamase superfamily
BF35_RS05040	PF00206	Lyase
BF35_RS05040	PF10415	Fumarase C C-terminus
BF35_RS05045	PF00106	short chain dehydrogenase
BF35_RS05050	PF13411	MerR HTH family regulatory protein
BF35_RS05055	PF03553	Na+/H+ antiporter family
BF35_RS05060	PF00535	Glycosyl transferase family 2
BF35_RS05070	PF03773	Predicted permease
BF35_RS05075	PF07683	Cobalamin synthesis protein cobW C-terminal domain
BF35_RS05075	PF02492	CobW/HypB/UreG, nucleotide-binding domain
BF35_RS05080	PF00892	EamA-like transporter family
BF35_RS05085	PF07729	FCD domain
BF35_RS05085	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS05095	PF01545	Cation efflux family
BF35_RS05095	PF16916	Dimerisation domain of Zinc Transporter
BF35_RS05115	PF13537	Glutamine amidotransferase domain
BF35_RS05115	PF00733	Asparagine synthase
BF35_RS05125	PF01047	MarR family
BF35_RS05150	PF13021	Domain of unknown function (DUF3885)
BF35_RS05155	PF00768	D-alanyl-D-alanine carboxypeptidase
BF35_RS05155	PF07943	Penicillin-binding protein 5, C-terminal domain
BF35_RS05170	PF10787	Uncharacterised protein from bacillus cereus group
BF35_RS05185	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS05195	PF00005	ABC transporter
BF35_RS05195	PF08402	TOBE domain
BF35_RS05200	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS05200	PF03466	LysR substrate binding domain
BF35_RS05225	PF08141	Small acid-soluble spore protein H family
BF35_RS05230	PF04203	Sortase domain
BF35_RS05235	PF04203	Sortase domain
BF35_RS05240	PF05738	Cna protein B-type domain
BF35_RS05240	PF17802	Prealbumin-like fold domain
BF35_RS05240	PF05737	Collagen binding domain
BF35_RS05260	PF03992	Antibiotic biosynthesis monooxygenase
BF35_RS05295	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BF35_RS05295	PF02272	DHHA1 domain
BF35_RS05295	PF01411	tRNA synthetases class II (A)
BF35_RS05300	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
BF35_RS05300	PF00460	Flagella basal body rod protein
BF35_RS05305	PF00448	SRP54-type protein, GTPase domain
BF35_RS05310	PF00771	FHIPEP family
BF35_RS05315	PF01312	FlhB HrpN YscU SpaS Family
BF35_RS05325	PF01313	Bacterial export proteins, family 3
BF35_RS05330	PF00813	FliP family
BF35_RS05340	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term
BF35_RS05340	PF04509	CheC-like family
BF35_RS05345	PF02154	Flagellar motor switch protein FliM
BF35_RS05345	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term
BF35_RS05355	PF01464	Transglycosylase SLT domain
BF35_RS05360	PF00669	Bacterial flagellin N-terminal helical region
BF35_RS05360	PF00700	Bacterial flagellin C-terminal helical region
BF35_RS05375	PF12181	DNA binding domain of the motility gene repressor (MogR)
BF35_RS05380	PF01584	CheW-like domain
BF35_RS05380	PF00072	Response regulator receiver domain
BF35_RS05395	PF07559	Flagellar basal body protein FlaE
BF35_RS05395	PF00460	Flagella basal body rod protein
BF35_RS05395	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
BF35_RS05415	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BF35_RS05415	PF18269	T3SS EscN ATPase C-terminal domain
BF35_RS05415	PF02874	ATP synthase alpha/beta family, beta-barrel domain
BF35_RS05425	PF01706	FliG C-terminal domain
BF35_RS05425	PF14841	FliG middle domain
BF35_RS05425	PF14842	FliG N-terminal domain
BF35_RS05430	PF01514	Secretory protein of YscJ/FliF family
BF35_RS05430	PF08345	Flagellar M-ring protein C-terminal
BF35_RS05435	PF02049	Flagellar hook-basal body complex protein FliE
BF35_RS05440	PF00460	Flagella basal body rod protein
BF35_RS05440	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
BF35_RS05445	PF00460	Flagella basal body rod protein
BF35_RS05460	PF02465	Flagellar hook-associated protein 2 N-terminus
BF35_RS05460	PF07195	Flagellar hook-associated protein 2 C-terminus
BF35_RS05460	PF07196	Flagellin hook IN motif
BF35_RS05465	PF00669	Bacterial flagellin N-terminal helical region
BF35_RS05465	PF00700	Bacterial flagellin C-terminal helical region
BF35_RS05470	PF00460	Flagella basal body rod protein
BF35_RS05470	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
BF35_RS05490	PF03705	CheR methyltransferase, all-alpha domain
BF35_RS05490	PF01739	CheR methyltransferase, SAM binding domain
BF35_RS05505	PF04509	CheC-like family
BF35_RS05505	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term
BF35_RS05510	PF02895	Signal transducing histidine kinase, homodimeric domain
BF35_RS05510	PF01627	Hpt domain
BF35_RS05510	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS05510	PF07194	P2 response regulator binding domain
BF35_RS05510	PF01584	CheW-like domain
BF35_RS05515	PF00072	Response regulator receiver domain
BF35_RS05520	PF13677	Membrane MotB of proton-channel complex MotA/MotB 
BF35_RS05520	PF00691	OmpA family
BF35_RS05525	PF01618	MotA/TolQ/ExbB proton channel family
BF35_RS05535	PF17209	Hfq protein
BF35_RS05555	PF07690	Major Facilitator Superfamily
BF35_RS05580	PF00881	Nitroreductase family
BF35_RS05590	PF02698	DUF218 domain
BF35_RS05595	PF04239	Protein of unknown function (DUF421)
BF35_RS05605	PF13411	MerR HTH family regulatory protein
BF35_RS05605	PF06445	GyrI-like small molecule binding domain
BF35_RS05610	PF00753	Metallo-beta-lactamase superfamily
BF35_RS05610	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
BF35_RS05610	PF17770	Ribonuclease J C-terminal domain
BF35_RS05615	PF00999	Sodium/hydrogen exchanger family
BF35_RS05625	PF00202	Aminotransferase class-III
BF35_RS05630	PF00474	Sodium:solute symporter family
BF35_RS05635	PF04341	Protein of unknown function, DUF485
BF35_RS05650	PF01810	LysE type translocator
BF35_RS05655	PF08892	YqcI/YcgG family
BF35_RS05660	PF00313	'Cold-shock' DNA-binding domain
BF35_RS05685	PF01263	Aldose 1-epimerase
BF35_RS05690	PF13456	Reverse transcriptase-like
BF35_RS05710	PF13673	Acetyltransferase (GNAT) domain
BF35_RS05710	PF18014	Acetyltransferase (GNAT) domain
BF35_RS05725	PF13439	Glycosyltransferase Family 4
BF35_RS05725	PF00534	Glycosyl transferases group 1
BF35_RS05730	PF00535	Glycosyl transferase family 2
BF35_RS05745	PF02397	Bacterial sugar transferase
BF35_RS05760	PF01757	Acyltransferase family
BF35_RS05770	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
BF35_RS05770	PF01367	5'-3' exonuclease, C-terminal SAM fold
BF35_RS05775	PF00690	Cation transporter/ATPase, N-terminus
BF35_RS05775	PF00689	Cation transporting ATPase, C-terminus
BF35_RS05785	PF03738	Glutathionylspermidine synthase preATP-grasp
BF35_RS05800	PF00581	Rhodanese-like domain
BF35_RS05805	PF10752	Protein of unknown function (DUF2533) 
BF35_RS05810	PF00583	Acetyltransferase (GNAT) family
BF35_RS05820	PF00350	Dynamin family
BF35_RS05825	PF04235	Protein of unknown function (DUF418)
BF35_RS05830	PF00860	Permease family
BF35_RS05835	PF00156	Phosphoribosyl transferase domain
BF35_RS05840	PF00557	Metallopeptidase family M24
BF35_RS05850	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
BF35_RS05855	PF13307	Helicase C-terminal domain
BF35_RS05865	PF01170	Putative RNA methylase family UPF0020
BF35_RS05865	PF02926	THUMP domain
BF35_RS05870	PF05103	DivIVA protein
BF35_RS05875	PF06908	YspA SLOG family
BF35_RS05905	PF10720	Protein of unknown function (DUF2515)
BF35_RS05910	PF03838	Recombination protein U
BF35_RS05925	PF00633	Helix-hairpin-helix motif
BF35_RS05925	PF00730	HhH-GPD superfamily base excision DNA repair protein
BF35_RS05925	PF10576	Iron-sulfur binding domain of endonuclease III
BF35_RS05930	PF07261	Replication initiation and membrane attachment
BF35_RS05935	PF00155	Aminotransferase class I and II
BF35_RS05945	PF14084	Protein of unknown function (DUF4264)
BF35_RS05950	PF00929	Exonuclease
BF35_RS05950	PF04851	Type III restriction enzyme, res subunit
BF35_RS05950	PF13307	Helicase C-terminal domain
BF35_RS05955	PF02261	Aspartate decarboxylase
BF35_RS05960	PF02569	Pantoate-beta-alanine ligase
BF35_RS05965	PF02548	Ketopantoate hydroxymethyltransferase
BF35_RS05975	PF02237	Biotin protein ligase C terminal domain
BF35_RS05975	PF08279	HTH domain
BF35_RS05975	PF03099	Biotin/lipoate A/B protein ligase family
BF35_RS05980	PF12627	Probable RNA and SrmB- binding site of polymerase A
BF35_RS05980	PF01743	Poly A polymerase head domain
BF35_RS05980	PF13735	tRNA nucleotidyltransferase domain 2 putative
BF35_RS05985	PF13439	Glycosyltransferase Family 4
BF35_RS05985	PF00534	Glycosyl transferases group 1
BF35_RS05990	PF02585	GlcNAc-PI de-N-acetylase
BF35_RS05995	PF02142	MGS-like domain
BF35_RS06000	PF05173	Dihydrodipicolinate reductase, C-terminus
BF35_RS06000	PF01113	Dihydrodipicolinate reductase, N-terminus
BF35_RS06005	PF03819	MazG nucleotide pyrophosphohydrolase domain
BF35_RS06010	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF35_RS06010	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS06020	PF04298	Putative neutral zinc metallopeptidase
BF35_RS06025	PF09577	Sporulation protein YpjB (SpoYpjB)
BF35_RS06035	PF07187	Protein of unknown function (DUF1405)
BF35_RS06040	PF00032	Cytochrome b(C-terminal)/b6/petD
BF35_RS06040	PF13442	Cytochrome C oxidase, cbb3-type, subunit III 
BF35_RS06045	PF00033	Cytochrome b/b6/petB
BF35_RS06050	PF00355	Rieske [2Fe-2S] domain
BF35_RS06055	PF10673	Protein of unknown function (DUF2487)
BF35_RS06060	PF08858	IDEAL domain
BF35_RS06060	PF08864	UPF0302 domain
BF35_RS06070	PF00155	Aminotransferase class I and II
BF35_RS06075	PF01761	3-dehydroquinate synthase
BF35_RS06080	PF01264	Chorismate synthase
BF35_RS06085	PF00334	Nucleoside diphosphate kinase
BF35_RS06090	PF00348	Polyprenyl synthetase
BF35_RS06095	PF01209	ubiE/COQ5 methyltransferase family
BF35_RS06100	PF07307	Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
BF35_RS06105	PF01227	GTP cyclohydrolase I
BF35_RS06110	PF00216	Bacterial DNA-binding protein
BF35_RS06115	PF09547	Stage IV sporulation protein A (spore_IV_A)
BF35_RS06125	PF10966	Protein of unknown function (DUF2768)
BF35_RS06135	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
BF35_RS06135	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
BF35_RS06140	PF01926	50S ribosome-binding GTPase
BF35_RS06140	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
BF35_RS06150	PF14045	YIEGIA protein
BF35_RS06160	PF14140	YpzI-like protein
BF35_RS06165	PF01070	FMN-dependent dehydrogenase
BF35_RS06170	PF00575	S1 RNA binding domain
BF35_RS06175	PF02224	Cytidylate kinase
BF35_RS06185	PF17763	Glutaminase/Asparaginase C-terminal domain
BF35_RS06185	PF00710	Asparaginase, N-terminal
BF35_RS06210	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
BF35_RS06210	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BF35_RS06215	PF05389	Negative regulator of genetic competence (MecA)
BF35_RS06220	PF02310	B12 binding domain
BF35_RS06220	PF02607	B12 binding domain
BF35_RS06220	PF13411	MerR HTH family regulatory protein
BF35_RS06225	PF00149	Calcineurin-like phosphoesterase
BF35_RS06235	PF02517	CPBP intramembrane metalloprotease
BF35_RS06240	PF00270	DEAD/DEAH box helicase
BF35_RS06240	PF00271	Helicase conserved C-terminal domain
BF35_RS06255	PF12822	ECF transporter, substrate-specific component
BF35_RS06265	PF01551	Peptidase family M23
BF35_RS06270	PF01923	Cobalamin adenosyltransferase
BF35_RS06275	PF18698	Histidine kinase sensor domain
BF35_RS06275	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS06275	PF00672	HAMP domain
BF35_RS06275	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS06275	PF00989	PAS fold
BF35_RS06280	PF00072	Response regulator receiver domain
BF35_RS06280	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS06285	PF01578	Cytochrome C assembly protein
BF35_RS06290	PF05140	ResB-like family 
BF35_RS06295	PF00578	AhpC/TSA family
BF35_RS06300	PF00849	RNA pseudouridylate synthase
BF35_RS06300	PF01479	S4 domain
BF35_RS06305	PF07670	Nucleoside recognition
BF35_RS06310	PF07670	Nucleoside recognition
BF35_RS06315	PF00768	D-alanyl-D-alanine carboxypeptidase
BF35_RS06315	PF07943	Penicillin-binding protein 5, C-terminal domain
BF35_RS06320	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
BF35_RS06320	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
BF35_RS06335	PF03706	Lysylphosphatidylglycerol synthase TM region
BF35_RS06335	PF09924	Uncharacterised conserved protein (DUF2156)
BF35_RS06345	PF01048	Phosphorylase superfamily
BF35_RS06350	PF16736	Single Cache-like 
BF35_RS06350	PF00989	PAS fold
BF35_RS06350	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS06350	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS06355	PF00589	Phage integrase family
BF35_RS06365	PF01904	Protein of unknown function DUF72
BF35_RS06370	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS06370	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS06370	PF00989	PAS fold
BF35_RS06385	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS06385	PF00912	Transglycosylase
BF35_RS06390	PF01865	Protein of unknown function DUF47
BF35_RS06395	PF01384	Phosphate transporter family
BF35_RS06400	PF01925	Sulfite exporter TauE/SafE
BF35_RS06420	PF00970	Oxidoreductase FAD-binding domain
BF35_RS06420	PF00175	Oxidoreductase NAD-binding domain 
BF35_RS06420	PF00042	Globin
BF35_RS06445	PF01209	ubiE/COQ5 methyltransferase family
BF35_RS06455	PF05525	Branched-chain amino acid transport protein
BF35_RS06465	PF00196	Bacterial regulatory proteins, luxR family
BF35_RS06465	PF00072	Response regulator receiver domain
BF35_RS06470	PF07730	Histidine kinase
BF35_RS06470	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS06470	PF00672	HAMP domain
BF35_RS06475	PF09922	Cell wall-active antibiotics response 4TMS YvqF
BF35_RS06490	PF03553	Na+/H+ antiporter family
BF35_RS06500	PF00375	Sodium:dicarboxylate symporter family
BF35_RS06510	PF00209	Sodium:neurotransmitter symporter family
BF35_RS06525	PF01903	CbiX
BF35_RS06530	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BF35_RS06540	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
BF35_RS06540	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
BF35_RS06550	PF01747	ATP-sulfurylase
BF35_RS06550	PF14306	PUA-like domain
BF35_RS06555	PF01507	Phosphoadenosine phosphosulfate reductase family
BF35_RS06565	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
BF35_RS06565	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
BF35_RS06575	PF00884	Sulfatase
BF35_RS06580	PF01066	CDP-alcohol phosphatidyltransferase
BF35_RS06585	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BF35_RS06585	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
BF35_RS06595	PF02811	PHP domain
BF35_RS06600	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
BF35_RS06605	PF01502	Phosphoribosyl-AMP cyclohydrolase
BF35_RS06610	PF00977	Histidine biosynthesis protein
BF35_RS06615	PF00977	Histidine biosynthesis protein
BF35_RS06620	PF00117	Glutamine amidotransferase class-I
BF35_RS06625	PF00475	Imidazoleglycerol-phosphate dehydratase
BF35_RS06630	PF00815	Histidinol dehydrogenase
BF35_RS06635	PF01634	ATP phosphoribosyltransferase
BF35_RS06640	PF13393	Histidyl-tRNA synthetase
BF35_RS06645	PF00694	Aconitase C-terminal domain
BF35_RS06650	PF00330	Aconitase family (aconitate hydratase)
BF35_RS06655	PF00180	Isocitrate/isopropylmalate dehydrogenase
BF35_RS06660	PF08502	LeuA allosteric (dimerisation) domain
BF35_RS06660	PF00682	HMGL-like
BF35_RS06665	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
BF35_RS06665	PF07991	Acetohydroxy acid isomeroreductase, NADPH-binding domain
BF35_RS06670	PF10369	Small subunit of acetolactate synthase
BF35_RS06670	PF01842	ACT domain
BF35_RS06675	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BF35_RS06675	PF00205	Thiamine pyrophosphate enzyme, central domain
BF35_RS06675	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BF35_RS06680	PF01063	Amino-transferase class IV
BF35_RS06695	PF03698	Uncharacterised protein family (UPF0180)
BF35_RS06710	PF09579	Sporulation protein YtfJ (Spore_YtfJ)
BF35_RS06720	PF02386	Cation transport protein
BF35_RS06725	PF00375	Sodium:dicarboxylate symporter family
BF35_RS06735	PF01047	MarR family
BF35_RS06750	PF02673	Bacitracin resistance protein BacA
BF35_RS06755	PF01554	MatE
BF35_RS06775	PF01636	Phosphotransferase enzyme family
BF35_RS06790	PF00258	Flavodoxin
BF35_RS06800	PF01546	Peptidase family M20/M25/M40
BF35_RS06800	PF07687	Peptidase dimerisation domain
BF35_RS06810	PF00501	AMP-binding enzyme
BF35_RS06810	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS06815	PF03062	MBOAT, membrane-bound O-acyltransferase family
BF35_RS06820	PF00550	Phosphopantetheine attachment site
BF35_RS06825	PF04914	DltD protein
BF35_RS06830	PF03060	Nitronate monooxygenase
BF35_RS06835	PF17676	LD-carboxypeptidase C-terminal domain
BF35_RS06835	PF02016	LD-carboxypeptidase N-terminal domain
BF35_RS06845	PF00857	Isochorismatase family
BF35_RS06855	PF01037	Lrp/AsnC ligand binding domain
BF35_RS06865	PF02517	CPBP intramembrane metalloprotease
BF35_RS06875	PF00005	ABC transporter
BF35_RS06885	PF00005	ABC transporter
BF35_RS06890	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS06895	PF00268	Ribonucleotide reductase, small chain
BF35_RS06900	PF02867	Ribonucleotide reductase, barrel domain
BF35_RS06900	PF08343	Ribonucleotide reductase N-terminal
BF35_RS06900	PF00317	Ribonucleotide reductase, all-alpha domain
BF35_RS06905	PF08343	Ribonucleotide reductase N-terminal
BF35_RS06905	PF00317	Ribonucleotide reductase, all-alpha domain
BF35_RS06905	PF02867	Ribonucleotide reductase, barrel domain
BF35_RS06910	PF07972	NrdI Flavodoxin like 
BF35_RS06950	PF09953	Uncharacterized protein conserved in bacteria (DUF2187)
BF35_RS06955	PF14489	QueF-like protein
BF35_RS06960	PF04055	Radical SAM superfamily
BF35_RS06965	PF01242	6-pyruvoyl tetrahydropterin synthase
BF35_RS06970	PF06508	Queuosine biosynthesis protein QueC
BF35_RS06975	PF00989	PAS fold
BF35_RS06975	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS06975	PF13188	PAS domain
BF35_RS06975	PF13426	PAS domain
BF35_RS06975	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS06985	PF12867	DinB superfamily
BF35_RS06995	PF01047	MarR family
BF35_RS07000	PF02743	Cache domain
BF35_RS07000	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS07000	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS07005	PF09388	Spo0E like sporulation regulatory protein
BF35_RS07010	PF04748	Divergent polysaccharide deacetylase
BF35_RS07020	PF00596	Class II Aldolase and Adducin N-terminal domain
BF35_RS07025	PF01520	N-acetylmuramoyl-L-alanine amidase
BF35_RS07025	PF00395	S-layer homology domain
BF35_RS07035	PF00455	DeoR C terminal sensor domain
BF35_RS07035	PF08220	DeoR-like helix-turn-helix domain
BF35_RS07045	PF00266	Aminotransferase class-V
BF35_RS07050	PF13419	Haloacid dehalogenase-like hydrolase
BF35_RS07055	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS07060	PF00005	ABC transporter
BF35_RS07060	PF08402	TOBE domain
BF35_RS07080	PF02386	Cation transport protein
BF35_RS07090	PF00561	alpha/beta hydrolase fold
BF35_RS07115	PF01575	MaoC like domain
BF35_RS07120	PF00269	Small, acid-soluble spore proteins, alpha/beta type
BF35_RS07125	PF02386	Cation transport protein
BF35_RS07130	PF03741	Integral membrane protein TerC family
BF35_RS07135	PF01226	Formate/nitrite transporter
BF35_RS07145	PF01478	Type IV leader peptidase family
BF35_RS07145	PF06750	Bacterial Peptidase A24 N-terminal domain
BF35_RS07150	PF02589	LUD domain
BF35_RS07155	PF02589	LUD domain
BF35_RS07155	PF13183	4Fe-4S dicluster domain
BF35_RS07155	PF11870	Domain of unknown function (DUF3390)
BF35_RS07160	PF02754	Cysteine-rich domain
BF35_RS07170	PF00672	HAMP domain
BF35_RS07170	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS07170	PF00989	PAS fold
BF35_RS07170	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS07170	PF18698	Histidine kinase sensor domain
BF35_RS07175	PF00072	Response regulator receiver domain
BF35_RS07175	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS07185	PF13556	PucR C-terminal helix-turn-helix domain
BF35_RS07185	PF17853	GGDEF-like domain
BF35_RS07185	PF05651	Putative sugar diacid recognition
BF35_RS07190	PF01565	FAD binding domain 
BF35_RS07190	PF02913	FAD linked oxidases, C-terminal domain
BF35_RS07195	PF02754	Cysteine-rich domain
BF35_RS07195	PF13183	4Fe-4S dicluster domain
BF35_RS07200	PF00188	Cysteine-rich secretory protein family
BF35_RS07210	PF00849	RNA pseudouridylate synthase
BF35_RS07210	PF01479	S4 domain
BF35_RS07220	PF03176	MMPL family
BF35_RS07230	PF13416	Bacterial extracellular solute-binding protein
BF35_RS07235	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS07240	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS07245	PF08402	TOBE domain
BF35_RS07245	PF00005	ABC transporter
BF35_RS07250	PF00171	Aldehyde dehydrogenase family
BF35_RS07255	PF05547	Immune inhibitor A peptidase M6
BF35_RS07265	PF08671	Anti-repressor SinI
BF35_RS07265	PF01381	Helix-turn-helix
BF35_RS07270	PF12389	Camelysin metallo-endopeptidase
BF35_RS07280	PF12389	Camelysin metallo-endopeptidase
BF35_RS07290	PF00768	D-alanyl-D-alanine carboxypeptidase
BF35_RS07290	PF07943	Penicillin-binding protein 5, C-terminal domain
BF35_RS07300	PF13649	Methyltransferase domain
BF35_RS07380	PF01381	Helix-turn-helix
BF35_RS07385	PF16870	2-oxoglutarate dehydrogenase C-terminal
BF35_RS07385	PF02779	Transketolase, pyrimidine binding domain
BF35_RS07385	PF00676	Dehydrogenase E1 component
BF35_RS07390	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
BF35_RS07390	PF00364	Biotin-requiring enzyme
BF35_RS07390	PF02817	e3 binding domain
BF35_RS07405	PF00881	Nitroreductase family
BF35_RS07425	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS07425	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
BF35_RS07450	PF10042	Uncharacterized conserved protein (DUF2278)
BF35_RS07455	PF02652	L-lactate permease
BF35_RS07465	PF00290	Tryptophan synthase alpha chain
BF35_RS07470	PF00291	Pyridoxal-phosphate dependent enzyme
BF35_RS07475	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
BF35_RS07480	PF00218	Indole-3-glycerol phosphate synthase
BF35_RS07485	PF02885	Glycosyl transferase family, helical bundle domain
BF35_RS07485	PF00591	Glycosyl transferase family, a/b domain
BF35_RS07490	PF00117	Glutamine amidotransferase class-I
BF35_RS07490	PF02885	Glycosyl transferase family, helical bundle domain
BF35_RS07490	PF00591	Glycosyl transferase family, a/b domain
BF35_RS07495	PF04715	Anthranilate synthase component I, N terminal region
BF35_RS07495	PF00425	chorismate binding enzyme
BF35_RS07505	PF00474	Sodium:solute symporter family
BF35_RS07510	PF02368	Bacterial Ig-like domain (group 2)
BF35_RS07525	PF00756	Putative esterase
BF35_RS07535	PF13673	Acetyltransferase (GNAT) domain
BF35_RS07540	PF00580	UvrD/REP helicase N-terminal domain
BF35_RS07540	PF13361	UvrD-like helicase C-terminal domain
BF35_RS07560	PF07098	Protein of unknown function (DUF1360)
BF35_RS07580	PF04321	RmlD substrate binding domain
BF35_RS07585	PF16363	GDP-mannose 4,6 dehydratase
BF35_RS07590	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
BF35_RS07595	PF00483	Nucleotidyl transferase
BF35_RS07615	PF13181	Tetratricopeptide repeat
BF35_RS07615	PF00535	Glycosyl transferase family 2
BF35_RS07625	PF05711	Macrocin-O-methyltransferase (TylF)
BF35_RS07630	PF08241	Methyltransferase domain
BF35_RS07635	PF00535	Glycosyl transferase family 2
BF35_RS07640	PF01098	Cell cycle protein
BF35_RS07645	PF00149	Calcineurin-like phosphoesterase
BF35_RS07655	PF00849	RNA pseudouridylate synthase
BF35_RS07660	PF01513	ATP-NAD kinase
BF35_RS07665	PF04607	Region found in RelA / SpoT proteins
BF35_RS07675	PF01928	CYTH domain
BF35_RS07680	PF01152	Bacterial-like globin
BF35_RS07695	PF08439	Oligopeptidase F
BF35_RS07695	PF01432	Peptidase family M3
BF35_RS07705	PF13396	Phospholipase_D-nuclease N-terminal
BF35_RS07705	PF13091	PLD-like domain
BF35_RS07710	PF05389	Negative regulator of genetic competence (MecA)
BF35_RS07715	PF03741	Integral membrane protein TerC family
BF35_RS07720	PF03960	ArsC family
BF35_RS07735	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS07740	PF01554	MatE
BF35_RS07745	PF00005	ABC transporter
BF35_RS07745	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BF35_RS07750	PF00005	ABC transporter
BF35_RS07750	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BF35_RS07755	PF12911	N-terminal TM domain of oligopeptide transport permease C
BF35_RS07755	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS07760	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS07765	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS07775	PF00579	tRNA synthetases class I (W and Y)
BF35_RS07780	PF12227	Protein of unknown function (DUF3603)
BF35_RS07785	PF10026	Predicted Zn-dependent protease (DUF2268)
BF35_RS07790	PF00109	Beta-ketoacyl synthase, N-terminal domain
BF35_RS07790	PF02801	Beta-ketoacyl synthase, C-terminal domain
BF35_RS07795	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
BF35_RS07795	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  
BF35_RS07800	PF10815	ComZ
BF35_RS07820	PF00004	ATPase family associated with various cellular activities (AAA)
BF35_RS07820	PF07724	AAA domain (Cdc48 subfamily)
BF35_RS07820	PF17871	AAA lid domain
BF35_RS07820	PF10431	C-terminal, D2-small domain, of ClpB protein 
BF35_RS07820	PF02861	Clp amino terminal domain, pathogenicity island component
BF35_RS07825	PF14168	YjzC-like protein
BF35_RS07845	PF12758	Protein of unknown function (DUF3813)
BF35_RS07850	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF35_RS07850	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS07860	PF00639	PPIC-type PPIASE domain
BF35_RS07865	PF17783	CvfB-like winged helix domain
BF35_RS07865	PF13509	S1 domain
BF35_RS07870	PF04461	Protein of unknown function (DUF520)
BF35_RS07885	PF00128	Alpha amylase, catalytic domain
BF35_RS07895	PF00909	Ammonium Transporter Family
BF35_RS07900	PF00199	Catalase
BF35_RS07900	PF06628	Catalase-related immune-responsive
BF35_RS07905	PF00762	Ferrochelatase
BF35_RS07910	PF00733	Asparagine synthase
BF35_RS07910	PF13537	Glutamine amidotransferase domain
BF35_RS07920	PF07457	Protein of unknown function (DUF1516)
BF35_RS07925	PF00202	Aminotransferase class-III
BF35_RS07935	PF01557	Fumarylacetoacetate (FAA) hydrolase family
BF35_RS07940	PF09388	Spo0E like sporulation regulatory protein
BF35_RS07945	PF10676	Spore germination protein gerPA/gerPF
BF35_RS07950	PF10803	Spore germination GerPB
BF35_RS07955	PF10737	Spore germination protein GerPC
BF35_RS07965	PF10970	Spore germination protein GerPE 
BF35_RS07970	PF10676	Spore germination protein gerPA/gerPF
BF35_RS07980	PF12705	PD-(D/E)XK nuclease superfamily
BF35_RS07980	PF00580	UvrD/REP helicase N-terminal domain
BF35_RS07980	PF13361	UvrD-like helicase C-terminal domain
BF35_RS07985	PF13361	UvrD-like helicase C-terminal domain
BF35_RS07985	PF12705	PD-(D/E)XK nuclease superfamily
BF35_RS08010	PF10502	Signal peptidase, peptidase S26 
BF35_RS08015	PF09335	SNARE associated Golgi protein
BF35_RS08025	PF06338	ComK protein
BF35_RS08040	PF00313	'Cold-shock' DNA-binding domain
BF35_RS08050	PF00463	Isocitrate lyase family
BF35_RS08055	PF01274	Malate synthase
BF35_RS08060	PF00395	S-layer homology domain
BF35_RS08070	PF03424	Carbohydrate binding domain (family 17/28)
BF35_RS08070	PF00395	S-layer homology domain
BF35_RS08070	PF00150	Cellulase (glycosyl hydrolase family 5)
BF35_RS08075	PF00892	EamA-like transporter family
BF35_RS08080	PF02743	Cache domain
BF35_RS08080	PF00672	HAMP domain
BF35_RS08080	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS08085	PF16491	CAAX prenyl protease N-terminal, five membrane helices
BF35_RS08085	PF01435	Peptidase family M48
BF35_RS08110	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS08110	PF00072	Response regulator receiver domain
BF35_RS08115	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS08115	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS08130	PF12833	Helix-turn-helix domain
BF35_RS08130	PF06445	GyrI-like small molecule binding domain
BF35_RS08135	PF04542	Sigma-70 region 2 
BF35_RS08135	PF08281	Sigma-70, region 4
BF35_RS08145	PF01966	HD domain
BF35_RS08150	PF00149	Calcineurin-like phosphoesterase
BF35_RS08155	PF12146	Serine aminopeptidase, S33
BF35_RS08175	PF05593	RHS Repeat
BF35_RS08180	PF00395	S-layer homology domain
BF35_RS08180	PF01520	N-acetylmuramoyl-L-alanine amidase
BF35_RS08190	PF00501	AMP-binding enzyme
BF35_RS08190	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS08200	PF03099	Biotin/lipoate A/B protein ligase family
BF35_RS08200	PF10437	Bacterial lipoate protein ligase C-terminus
BF35_RS08205	PF12706	Beta-lactamase superfamily domain
BF35_RS08210	PF14149	YhfH-like protein
BF35_RS08215	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS08220	PF08279	HTH domain
BF35_RS08220	PF13280	WYL domain
BF35_RS08250	PF17932	Tetracyclin repressor-like, C-terminal domain
BF35_RS08250	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS08275	PF01593	Flavin containing amine oxidoreductase
BF35_RS08280	PF00762	Ferrochelatase
BF35_RS08285	PF01208	Uroporphyrinogen decarboxylase (URO-D)
BF35_RS08290	PF00912	Transglycosylase
BF35_RS08290	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS08295	PF03992	Antibiotic biosynthesis monooxygenase
BF35_RS08300	PF03703	Bacterial PH domain
BF35_RS08305	PF03703	Bacterial PH domain
BF35_RS08345	PF03703	Bacterial PH domain
BF35_RS08350	PF03703	Bacterial PH domain
BF35_RS08360	PF17934	Tetracyclin repressor-like, C-terminal domain
BF35_RS08360	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS08365	PF12787	EcsC protein family
BF35_RS08370	PF05975	Bacterial ABC transporter protein EcsB
BF35_RS08375	PF00005	ABC transporter
BF35_RS08380	PF01230	HIT domain
BF35_RS08385	PF12732	YtxH-like protein
BF35_RS08390	PF01047	MarR family
BF35_RS08415	PF13538	UvrD-like helicase C-terminal domain
BF35_RS08435	PF08281	Sigma-70, region 4
BF35_RS08435	PF04542	Sigma-70 region 2 
BF35_RS08460	PF16901	C-terminal domain of alpha-glycerophosphate oxidase
BF35_RS08460	PF01266	FAD dependent oxidoreductase
BF35_RS08465	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
BF35_RS08465	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
BF35_RS08470	PF00230	Major intrinsic protein
BF35_RS08475	PF04309	Glycerol-3-phosphate responsive antiterminator
BF35_RS08495	PF08386	TAP-like protein
BF35_RS08495	PF00561	alpha/beta hydrolase fold
BF35_RS08505	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS08510	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS08530	PF18801	response regulator aspartate phosphatase H, N terminal
BF35_RS08540	PF13411	MerR HTH family regulatory protein
BF35_RS08540	PF13152	Protein of unknown function (DUF3967)
BF35_RS08550	PF00144	Beta-lactamase
BF35_RS08555	PF01966	HD domain
BF35_RS08555	PF01336	OB-fold nucleic acid binding domain
BF35_RS08560	PF13514	AAA domain
BF35_RS08565	PF00149	Calcineurin-like phosphoesterase
BF35_RS08580	PF11121	Protein of unknown function (DUF2639)
BF35_RS08590	PF00072	Response regulator receiver domain
BF35_RS08590	PF00196	Bacterial regulatory proteins, luxR family
BF35_RS08595	PF07730	Histidine kinase
BF35_RS08595	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS08605	PF00107	Zinc-binding dehydrogenase
BF35_RS08605	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS08620	PF01906	Putative heavy-metal-binding
BF35_RS08645	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS08645	PF00497	Bacterial extracellular solute-binding proteins, family 3
BF35_RS08645	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS08645	PF01627	Hpt domain
BF35_RS08645	PF00072	Response regulator receiver domain
BF35_RS08650	PF01739	CheR methyltransferase, SAM binding domain
BF35_RS08650	PF03705	CheR methyltransferase, all-alpha domain
BF35_RS08655	PF13426	PAS domain
BF35_RS08655	PF07228	Stage II sporulation protein E (SpoIIE)
BF35_RS08665	PF04539	Sigma-70 region 3
BF35_RS08665	PF04542	Sigma-70 region 2 
BF35_RS08665	PF04545	Sigma-70, region 4
BF35_RS08670	PF13581	Histidine kinase-like ATPase domain
BF35_RS08675	PF01740	STAS domain
BF35_RS08690	PF05532	CsbD-like
BF35_RS08695	PF11181	Heat induced stress protein YflT
BF35_RS08710	PF03424	Carbohydrate binding domain (family 17/28)
BF35_RS08710	PF00150	Cellulase (glycosyl hydrolase family 5)
BF35_RS08710	PF00395	S-layer homology domain
BF35_RS08730	PF00395	S-layer homology domain
BF35_RS08730	PF02368	Bacterial Ig-like domain (group 2)
BF35_RS08755	PF01966	HD domain
BF35_RS08755	PF00672	HAMP domain
BF35_RS08770	PF18801	response regulator aspartate phosphatase H, N terminal
BF35_RS08780	PF02082	Transcriptional regulator
BF35_RS08785	PF02525	Flavodoxin-like fold
BF35_RS08800	PF02733	Dak1 domain
BF35_RS08820	PF01066	CDP-alcohol phosphatidyltransferase
BF35_RS08885	PF07690	Major Facilitator Superfamily
BF35_RS08900	PF01925	Sulfite exporter TauE/SafE
BF35_RS08915	PF00772	DnaB-like helicase N terminal domain
BF35_RS08915	PF03796	DnaB-like helicase C terminal domain
BF35_RS08935	PF13411	MerR HTH family regulatory protein
BF35_RS08935	PF06445	GyrI-like small molecule binding domain
BF35_RS08950	PF00271	Helicase conserved C-terminal domain
BF35_RS08950	PF04851	Type III restriction enzyme, res subunit
BF35_RS08960	PF00271	Helicase conserved C-terminal domain
BF35_RS08960	PF13588	Type I restriction enzyme R protein N terminus (HSDR_N)
BF35_RS08960	PF04851	Type III restriction enzyme, res subunit
BF35_RS08960	PF08463	EcoEI R protein C-terminal
BF35_RS08965	PF00293	NUDIX domain
BF35_RS08970	PF03401	Tripartite tricarboxylate transporter family receptor
BF35_RS08975	PF08279	HTH domain
BF35_RS08975	PF12431	Transcriptional regulator 
BF35_RS08975	PF00072	Response regulator receiver domain
BF35_RS08980	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS08980	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
BF35_RS08985	PF00083	Sugar (and other) transporter
BF35_RS09010	PF02423	Ornithine cyclodeaminase/mu-crystallin family
BF35_RS09015	PF05544	Proline racemase
BF35_RS09020	PF11121	Protein of unknown function (DUF2639)
BF35_RS09030	PF01520	N-acetylmuramoyl-L-alanine amidase
BF35_RS09030	PF00395	S-layer homology domain
BF35_RS09035	PF05343	M42 glutamyl aminopeptidase
BF35_RS09055	PF00378	Enoyl-CoA hydratase/isomerase
BF35_RS09065	PF03062	MBOAT, membrane-bound O-acyltransferase family
BF35_RS09075	PF00395	S-layer homology domain
BF35_RS09085	PF01943	Polysaccharide biosynthesis protein
BF35_RS09085	PF14667	Polysaccharide biosynthesis C-terminal domain
BF35_RS09090	PF07516	SecA Wing and Scaffold domain
BF35_RS09090	PF01043	SecA preprotein cross-linking domain
BF35_RS09090	PF07517	SecA DEAD-like domain
BF35_RS09105	PF01740	STAS domain
BF35_RS09105	PF00916	Sulfate permease family
BF35_RS09125	PF00501	AMP-binding enzyme
BF35_RS09125	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS09135	PF04055	Radical SAM superfamily
BF35_RS09140	PF01510	N-acetylmuramoyl-L-alanine amidase
BF35_RS09140	PF01471	Putative peptidoglycan binding domain
BF35_RS09145	PF17961	Bacterial Ig domain
BF35_RS09145	PF00746	LPXTG cell wall anchor motif
BF35_RS09145	PF10425	C-terminus of bacterial fibrinogen-binding adhesin
BF35_RS09145	PF04650	YSIRK type signal peptide
BF35_RS09145	PF17210	SdrD B-like domain
BF35_RS09155	PF02245	Methylpurine-DNA glycosylase (MPG)
BF35_RS09160	PF03306	Alpha-acetolactate decarboxylase
BF35_RS09165	PF00205	Thiamine pyrophosphate enzyme, central domain
BF35_RS09165	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BF35_RS09165	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BF35_RS09180	PF06133	Control of competence regulator ComK, YlbF/YmcA
BF35_RS09185	PF04286	Protein of unknown function (DUF445)
BF35_RS09195	PF14398	YheC/D like ATP-grasp
BF35_RS09205	PF00269	Small, acid-soluble spore proteins, alpha/beta type
BF35_RS09210	PF00005	ABC transporter
BF35_RS09215	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS09220	PF00497	Bacterial extracellular solute-binding proteins, family 3
BF35_RS09225	PF00005	ABC transporter
BF35_RS09225	PF00664	ABC transporter transmembrane region
BF35_RS09230	PF00664	ABC transporter transmembrane region
BF35_RS09230	PF00005	ABC transporter
BF35_RS09240	PF00171	Aldehyde dehydrogenase family
BF35_RS09250	PF01177	Asp/Glu/Hydantoin racemase
BF35_RS09255	PF13520	Amino acid permease
BF35_RS09265	PF06628	Catalase-related immune-responsive
BF35_RS09265	PF18011	C-terminal domain found in long catalases
BF35_RS09265	PF00199	Catalase
BF35_RS09270	PF01965	DJ-1/PfpI family
BF35_RS09280	PF07690	Major Facilitator Superfamily
BF35_RS09285	PF12793	Sugar transport-related sRNA regulator N-term
BF35_RS09285	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS09295	PF02525	Flavodoxin-like fold
BF35_RS09305	PF01638	HxlR-like helix-turn-helix
BF35_RS09310	PF07690	Major Facilitator Superfamily
BF35_RS09315	PF17934	Tetracyclin repressor-like, C-terminal domain
BF35_RS09315	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS09320	PF00893	Small Multidrug Resistance protein
BF35_RS09325	PF00893	Small Multidrug Resistance protein
BF35_RS09335	PF01037	Lrp/AsnC ligand binding domain
BF35_RS09340	PF00892	EamA-like transporter family
BF35_RS09355	PF07681	DoxX
BF35_RS09365	PF00367	phosphotransferase system, EIIB
BF35_RS09365	PF02378	Phosphotransferase system, EIIC 
BF35_RS09370	PF13580	SIS domain
BF35_RS09375	PF01380	SIS domain
BF35_RS09375	PF01418	Helix-turn-helix domain, rpiR family
BF35_RS09385	PF00999	Sodium/hydrogen exchanger family
BF35_RS09390	PF13520	Amino acid permease
BF35_RS09425	PF09335	SNARE associated Golgi protein
BF35_RS09435	PF02735	Ku70/Ku80 beta-barrel domain
BF35_RS09450	PF11007	Spore coat associated protein JA (CotJA)
BF35_RS09455	PF12652	CotJB protein
BF35_RS09460	PF05067	Manganese containing catalase
BF35_RS09465	PF05525	Branched-chain amino acid transport protein
BF35_RS09480	PF09529	Integral membrane protein (intg_mem_TP0381)
BF35_RS09490	PF00005	ABC transporter
BF35_RS09495	PF02687	FtsX-like permease family
BF35_RS09495	PF12704	MacB-like periplasmic core domain
BF35_RS09505	PF07690	Major Facilitator Superfamily
BF35_RS09515	PF01022	Bacterial regulatory protein, arsR family
BF35_RS09525	PF00248	Aldo/keto reductase family
BF35_RS09530	PF07690	Major Facilitator Superfamily
BF35_RS09535	PF01817	Chorismate mutase type II
BF35_RS09535	PF00793	DAHP synthetase I family
BF35_RS09540	PF07690	Major Facilitator Superfamily
BF35_RS09545	PF00483	Nucleotidyl transferase
BF35_RS09550	PF16363	GDP-mannose 4,6 dehydratase
BF35_RS09575	PF01476	LysM domain
BF35_RS09575	PF06725	3D domain
BF35_RS09590	PF02378	Phosphotransferase system, EIIC 
BF35_RS09595	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
BF35_RS09600	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
BF35_RS09605	PF08279	HTH domain
BF35_RS09605	PF00874	PRD domain
BF35_RS09605	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BF35_RS09605	PF05043	Mga helix-turn-helix domain
BF35_RS09615	PF07690	Major Facilitator Superfamily
BF35_RS09620	PF02690	Na+/Pi-cotransporter
BF35_RS09625	PF00107	Zinc-binding dehydrogenase
BF35_RS09625	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS09630	PF03816	Cell envelope-related transcriptional attenuator domain
BF35_RS09640	PF01925	Sulfite exporter TauE/SafE
BF35_RS09645	PF13686	DsrE/DsrF/DrsH-like family
BF35_RS09655	PF00581	Rhodanese-like domain
BF35_RS09655	PF01206	Sulfurtransferase TusA
BF35_RS09665	PF01206	Sulfurtransferase TusA
BF35_RS09670	PF00753	Metallo-beta-lactamase superfamily
BF35_RS09670	PF00581	Rhodanese-like domain
BF35_RS09675	PF00581	Rhodanese-like domain
BF35_RS09675	PF01206	Sulfurtransferase TusA
BF35_RS09680	PF02583	Metal-sensitive transcriptional repressor
BF35_RS09685	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
BF35_RS09685	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS09710	PF04293	SpoVR like protein
BF35_RS09715	PF00881	Nitroreductase family
BF35_RS09725	PF03323	Bacillus/Clostridium GerA spore germination protein
BF35_RS09735	PF03845	Spore germination protein
BF35_RS09745	PF14148	YhdB-like protein
BF35_RS09750	PF02600	Disulfide bond formation protein DsbB
BF35_RS09755	PF00085	Thioredoxin
BF35_RS09765	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS09765	PF13407	Periplasmic binding protein domain
BF35_RS09770	PF00367	phosphotransferase system, EIIB
BF35_RS09770	PF02378	Phosphotransferase system, EIIC 
BF35_RS09775	PF08244	Glycosyl hydrolases family 32 C terminal
BF35_RS09775	PF00251	Glycosyl hydrolases family 32 N-terminal domain
BF35_RS09780	PF00294	pfkB family carbohydrate kinase
BF35_RS09790	PF03734	L,D-transpeptidase catalytic domain
BF35_RS09790	PF17969	L,D-transpeptidase C-terminal domain
BF35_RS09800	PF00860	Permease family
BF35_RS09815	PF01047	MarR family
BF35_RS09820	PF07690	Major Facilitator Superfamily
BF35_RS09825	PF02702	Osmosensitive K+ channel His kinase sensor domain
BF35_RS09830	PF02669	K+-transporting ATPase, c chain
BF35_RS09840	PF03814	Potassium-transporting ATPase A subunit
BF35_RS09870	PF08543	Phosphomethylpyrimidine kinase
BF35_RS09875	PF00899	ThiF family
BF35_RS09880	PF05690	Thiazole biosynthesis protein ThiG
BF35_RS09885	PF02597	ThiS family
BF35_RS09890	PF01266	FAD dependent oxidoreductase
BF35_RS09895	PF02581	Thiamine monophosphate synthase
BF35_RS09900	PF09084	NMT1/THI5 like
BF35_RS09905	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS09910	PF00005	ABC transporter
BF35_RS09915	PF03070	TENA/THI-4/PQQC family
BF35_RS09920	PF00246	Zinc carboxypeptidase
BF35_RS09920	PF08239	Bacterial SH3 domain
BF35_RS09940	PF00571	CBS domain
BF35_RS10060	PF00873	AcrB/AcrD/AcrF family
BF35_RS10070	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS10075	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS10080	PF12849	PBP superfamily domain
BF35_RS10085	PF07670	Nucleoside recognition
BF35_RS10085	PF04023	FeoA domain
BF35_RS10085	PF17910	FeoB cytosolic helical domain
BF35_RS10085	PF02421	Ferrous iron transport protein B
BF35_RS10085	PF07664	Ferrous iron transport protein B C terminus
BF35_RS10090	PF07670	Nucleoside recognition
BF35_RS10090	PF02421	Ferrous iron transport protein B
BF35_RS10090	PF17910	FeoB cytosolic helical domain
BF35_RS10090	PF07664	Ferrous iron transport protein B C terminus
BF35_RS10095	PF07664	Ferrous iron transport protein B C terminus
BF35_RS10095	PF02421	Ferrous iron transport protein B
BF35_RS10095	PF17910	FeoB cytosolic helical domain
BF35_RS10095	PF07670	Nucleoside recognition
BF35_RS10105	PF05504	Spore germination B3/ GerAC like, C-terminal 
BF35_RS10110	PF03845	Spore germination protein
BF35_RS10115	PF03323	Bacillus/Clostridium GerA spore germination protein
BF35_RS10120	PF00474	Sodium:solute symporter family
BF35_RS10130	PF07687	Peptidase dimerisation domain
BF35_RS10130	PF01546	Peptidase family M20/M25/M40
BF35_RS10135	PF13529	Peptidase_C39 like family
BF35_RS10140	PF00324	Amino acid permease
BF35_RS10145	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
BF35_RS10150	PF00115	Cytochrome C and Quinol oxidase polypeptide I
BF35_RS10155	PF00510	Cytochrome c oxidase subunit III
BF35_RS10165	PF00999	Sodium/hydrogen exchanger family
BF35_RS10165	PF02080	TrkA-C domain
BF35_RS10165	PF02254	TrkA-N domain
BF35_RS10175	PF13673	Acetyltransferase (GNAT) domain
BF35_RS10190	PF00860	Permease family
BF35_RS10195	PF00324	Amino acid permease
BF35_RS10210	PF05525	Branched-chain amino acid transport protein
BF35_RS10215	PF00854	POT family
BF35_RS10220	PF04203	Sortase domain
BF35_RS10230	PF01381	Helix-turn-helix
BF35_RS10235	PF07501	G5 domain
BF35_RS10235	PF03990	G5-linked-Ubiquitin-like domain
BF35_RS10235	PF06725	3D domain
BF35_RS10240	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS10240	PF02743	Cache domain
BF35_RS10240	PF00672	HAMP domain
BF35_RS10245	PF02673	Bacitracin resistance protein BacA
BF35_RS10270	PF03372	Endonuclease/Exonuclease/phosphatase family
BF35_RS10275	PF00882	Zinc dependent phospholipase C
BF35_RS10285	PF00107	Zinc-binding dehydrogenase
BF35_RS10285	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS10295	PF05547	Immune inhibitor A peptidase M6
BF35_RS10300	PF00923	Transaldolase/Fructose-6-phosphate aldolase
BF35_RS10305	PF13407	Periplasmic binding protein domain
BF35_RS10310	PF02653	Branched-chain amino acid transport system / permease component
BF35_RS10315	PF00005	ABC transporter
BF35_RS10320	PF05025	RbsD / FucU transport protein family
BF35_RS10325	PF00294	pfkB family carbohydrate kinase
BF35_RS10330	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS10335	PF07690	Major Facilitator Superfamily
BF35_RS10340	PF01047	MarR family
BF35_RS10345	PF07690	Major Facilitator Superfamily
BF35_RS10350	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BF35_RS10350	PF00005	ABC transporter
BF35_RS10355	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BF35_RS10355	PF00005	ABC transporter
BF35_RS10360	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS10365	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS10370	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS10380	PF00582	Universal stress protein family
BF35_RS10385	PF00916	Sulfate permease family
BF35_RS10385	PF01740	STAS domain
BF35_RS10395	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS10395	PF00072	Response regulator receiver domain
BF35_RS10400	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS10400	PF00989	PAS fold
BF35_RS10400	PF18698	Histidine kinase sensor domain
BF35_RS10400	PF00672	HAMP domain
BF35_RS10400	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS10405	PF01872	RibD C-terminal domain
BF35_RS10410	PF08279	HTH domain
BF35_RS10410	PF13280	WYL domain
BF35_RS10420	PF04542	Sigma-70 region 2 
BF35_RS10420	PF08281	Sigma-70, region 4
BF35_RS10435	PF00324	Amino acid permease
BF35_RS10440	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS10445	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS10450	PF00497	Bacterial extracellular solute-binding proteins, family 3
BF35_RS10455	PF00005	ABC transporter
BF35_RS10460	PF01235	Sodium:alanine symporter family
BF35_RS10465	PF01636	Phosphotransferase enzyme family
BF35_RS10475	PF03323	Bacillus/Clostridium GerA spore germination protein
BF35_RS10490	PF16657	Maltogenic Amylase, C-terminal domain
BF35_RS10490	PF00128	Alpha amylase, catalytic domain
BF35_RS10495	PF00367	phosphotransferase system, EIIB
BF35_RS10495	PF02378	Phosphotransferase system, EIIC 
BF35_RS10500	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS10500	PF07702	UTRA domain
BF35_RS10505	PF13520	Amino acid permease
BF35_RS10525	PF13396	Phospholipase_D-nuclease N-terminal
BF35_RS10525	PF13091	PLD-like domain
BF35_RS10530	PF07728	AAA domain (dynein-related subfamily)
BF35_RS10540	PF00293	NUDIX domain
BF35_RS10540	PF13344	Haloacid dehalogenase-like hydrolase
BF35_RS10545	PF01370	NAD dependent epimerase/dehydratase family
BF35_RS10550	PF00155	Aminotransferase class I and II
BF35_RS10555	PF08241	Methyltransferase domain
BF35_RS10560	PF00005	ABC transporter
BF35_RS10565	PF01032	FecCD transport family
BF35_RS10570	PF01032	FecCD transport family
BF35_RS10575	PF01497	Periplasmic binding protein
BF35_RS10580	PF00854	POT family
BF35_RS10585	PF08141	Small acid-soluble spore protein H family
BF35_RS10590	PF01022	Bacterial regulatory protein, arsR family
BF35_RS10595	PF02652	L-lactate permease
BF35_RS10600	PF00206	Lyase
BF35_RS10600	PF10415	Fumarase C C-terminus
BF35_RS10605	PF00571	CBS domain
BF35_RS10605	PF03471	Transporter associated domain
BF35_RS10605	PF01595	Cyclin M transmembrane N-terminal domain
BF35_RS10610	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS10615	PF01773	Na+ dependent nucleoside transporter N-terminus
BF35_RS10615	PF07662	Na+ dependent nucleoside transporter C-terminus
BF35_RS10620	PF03816	Cell envelope-related transcriptional attenuator domain
BF35_RS10625	PF04294	VanW like protein
BF35_RS10645	PF03413	Peptidase propeptide and YPEB domain
BF35_RS10645	PF01447	Thermolysin metallopeptidase, catalytic domain
BF35_RS10645	PF02868	Thermolysin metallopeptidase, alpha-helical domain
BF35_RS10645	PF07504	Fungalysin/Thermolysin Propeptide Motif
BF35_RS10660	PF17767	Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
BF35_RS10660	PF17956	Nicotinate phosphoribosyltransferase C-terminal domain
BF35_RS10660	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
BF35_RS10665	PF00403	Heavy-metal-associated domain
BF35_RS10670	PF01022	Bacterial regulatory protein, arsR family
BF35_RS10675	PF13520	Amino acid permease
BF35_RS10680	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
BF35_RS10680	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
BF35_RS10690	PF07849	Protein of unknown function (DUF1641)
BF35_RS10695	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BF35_RS10695	PF00037	4Fe-4S binding domain
BF35_RS10695	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
BF35_RS10695	PF00384	Molybdopterin oxidoreductase
BF35_RS10695	PF01568	Molydopterin dinucleotide binding domain
BF35_RS10700	PF02634	FdhD/NarQ family
BF35_RS10705	PF00583	Acetyltransferase (GNAT) family
BF35_RS10705	PF13508	Acetyltransferase (GNAT) domain
BF35_RS10715	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS10715	PF00072	Response regulator receiver domain
BF35_RS10720	PF18698	Histidine kinase sensor domain
BF35_RS10720	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS10720	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS10720	PF00989	PAS fold
BF35_RS10720	PF00672	HAMP domain
BF35_RS10730	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS10730	PF00155	Aminotransferase class I and II
BF35_RS10735	PF00892	EamA-like transporter family
BF35_RS10745	PF03949	Malic enzyme, NAD binding domain
BF35_RS10745	PF00390	Malic enzyme, N-terminal domain
BF35_RS10750	PF03390	2-hydroxycarboxylate transporter family
BF35_RS10755	PF00072	Response regulator receiver domain
BF35_RS10760	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS10760	PF00989	PAS fold
BF35_RS10760	PF17203	Single cache domain 3
BF35_RS10760	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
BF35_RS10765	PF02743	Cache domain
BF35_RS10765	PF00672	HAMP domain
BF35_RS10765	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS10770	PF13529	Peptidase_C39 like family
BF35_RS10780	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS10780	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS10785	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS10785	PF00072	Response regulator receiver domain
BF35_RS10810	PF03600	Citrate transporter
BF35_RS10815	PF00072	Response regulator receiver domain
BF35_RS10815	PF12431	Transcriptional regulator 
BF35_RS10820	PF17203	Single cache domain 3
BF35_RS10820	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
BF35_RS10820	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS10820	PF00989	PAS fold
BF35_RS10830	PF01145	SPFH domain / Band 7 family
BF35_RS10830	PF15975	Flotillin
BF35_RS10840	PF18496	Collagenase G catalytic helper subdomain
BF35_RS10840	PF08453	Peptidase family M9 N-terminal
BF35_RS10840	PF01752	Collagenase
BF35_RS10845	PF02028	BCCT, betaine/carnitine/choline family transporter
BF35_RS10860	PF04285	Protein of unknown function (DUF444)
BF35_RS10870	PF08298	PrkA AAA domain
BF35_RS10870	PF06798	PrkA serine protein kinase C-terminal domain
BF35_RS10880	PF03707	Bacterial signalling protein N terminal repeat
BF35_RS10880	PF00990	Diguanylate cyclase, GGDEF domain
BF35_RS10880	PF00563	EAL domain
BF35_RS10885	PF00588	SpoU rRNA Methylase family
BF35_RS10890	PF12671	Putative amidase domain
BF35_RS10895	PF08331	Domain of unknown function (DUF1730)
BF35_RS10915	PF13462	Thioredoxin
BF35_RS10920	PF00912	Transglycosylase
BF35_RS10920	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS10925	PF00293	NUDIX domain
BF35_RS10925	PF13344	Haloacid dehalogenase-like hydrolase
BF35_RS10930	PF01709	Transcriptional regulator
BF35_RS11030	PF11023	Zinc-ribbon containing domain
BF35_RS11035	PF01475	Ferric uptake regulator family
BF35_RS11040	PF00578	AhpC/TSA family
BF35_RS11045	PF07885	Ion channel
BF35_RS11060	PF00005	ABC transporter
BF35_RS11065	PF00202	Aminotransferase class-III
BF35_RS11070	PF01493	GXGXG motif
BF35_RS11070	PF01645	Conserved region in glutamate synthase
BF35_RS11070	PF04898	Glutamate synthase central domain
BF35_RS11070	PF00310	Glutamine amidotransferases class-II
BF35_RS11075	PF06081	Aromatic acid exporter family member 1
BF35_RS11080	PF00664	ABC transporter transmembrane region
BF35_RS11080	PF00005	ABC transporter
BF35_RS11085	PF04167	Protein of unknown function (DUF402)
BF35_RS11090	PF14182	YgaB-like protein
BF35_RS11095	PF04259	Small, acid-soluble spore protein, gamma-type 
BF35_RS11105	PF00730	HhH-GPD superfamily base excision DNA repair protein
BF35_RS11105	PF14815	NUDIX domain
BF35_RS11110	PF04307	LexA-binding, inner membrane-associated putative hydrolase
BF35_RS11115	PF14043	WVELL protein
BF35_RS11120	PF08176	Small acid-soluble spore protein K family
BF35_RS11135	PF02631	RecX family
BF35_RS11140	PF08338	Domain of unknown function (DUF1731)
BF35_RS11140	PF01370	NAD dependent epimerase/dehydratase family
BF35_RS11145	PF01979	Amidohydrolase family
BF35_RS11160	PF04101	Glycosyltransferase family 28 C-terminal domain
BF35_RS11160	PF06925	Monogalactosyldiacylglycerol (MGDG) synthase
BF35_RS11165	PF04055	Radical SAM superfamily
BF35_RS11170	PF01228	Glycine radical
BF35_RS11170	PF02901	Pyruvate formate lyase-like
BF35_RS11180	PF00535	Glycosyl transferase family 2
BF35_RS11185	PF02911	Formyl transferase, C-terminal domain
BF35_RS11185	PF00551	Formyl transferase
BF35_RS11185	PF01370	NAD dependent epimerase/dehydratase family
BF35_RS11190	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
BF35_RS11190	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
BF35_RS11190	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
BF35_RS11195	PF00535	Glycosyl transferase family 2
BF35_RS11215	PF00144	Beta-lactamase
BF35_RS11220	PF02378	Phosphotransferase system, EIIC 
BF35_RS11220	PF00367	phosphotransferase system, EIIB
BF35_RS11225	PF04960	Glutaminase
BF35_RS11255	PF07687	Peptidase dimerisation domain
BF35_RS11255	PF01546	Peptidase family M20/M25/M40
BF35_RS11260	PF00324	Amino acid permease
BF35_RS11270	PF00158	Sigma-54 interaction domain
BF35_RS11270	PF13426	PAS domain
BF35_RS11270	PF02954	Bacterial regulatory protein, Fis family
BF35_RS11280	PF01416	tRNA pseudouridine synthase
BF35_RS11285	PF05958	tRNA (Uracil-5-)-methyltransferase
BF35_RS11285	PF01938	TRAM domain
BF35_RS11290	PF00730	HhH-GPD superfamily base excision DNA repair protein
BF35_RS11295	PF01522	Polysaccharide deacetylase
BF35_RS11300	PF05683	Fumarase C-terminus
BF35_RS11300	PF05681	Fumarate hydratase (Fumerase)
BF35_RS11315	PF14167	YfkD-like protein
BF35_RS11320	PF01699	Sodium/calcium exchanger protein
BF35_RS11325	PF16242	Pyridoxamine 5'-phosphate oxidase like
BF35_RS11340	PF09335	SNARE associated Golgi protein
BF35_RS11350	PF10502	Signal peptidase, peptidase S26 
BF35_RS11360	PF00892	EamA-like transporter family
BF35_RS11370	PF03631	Virulence factor BrkB
BF35_RS11380	PF01451	Low molecular weight phosphotyrosine protein phosphatase
BF35_RS11385	PF06569	Protein of unknown function (DUF1128)
BF35_RS11390	PF00689	Cation transporting ATPase, C-terminus
BF35_RS11390	PF00690	Cation transporter/ATPase, N-terminus
BF35_RS11395	PF05816	Toxic anion resistance protein (TelA)
BF35_RS11400	PF14266	Putative component of 'biosynthetic module'
BF35_RS11405	PF03741	Integral membrane protein TerC family
BF35_RS11410	PF02342	TerD domain
BF35_RS11415	PF02342	TerD domain
BF35_RS11420	PF02342	TerD domain
BF35_RS11425	PF00480	ROK family
BF35_RS11435	PF03129	Anticodon binding domain
BF35_RS11435	PF09180	Prolyl-tRNA synthetase, C-terminal
BF35_RS11435	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BF35_RS11450	PF11700	Vacuole effluxer Atg22 like
BF35_RS11465	PF08360	QacR-like protein, C-terminal region
BF35_RS11465	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS11490	PF00041	Fibronectin type III domain
BF35_RS11490	PF00704	Glycosyl hydrolases family 18
BF35_RS11495	PF00005	ABC transporter
BF35_RS11495	PF12848	ABC transporter
BF35_RS11505	PF00005	ABC transporter
BF35_RS11515	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS11520	PF01910	Thiamine-binding protein
BF35_RS11525	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS11525	PF00672	HAMP domain
BF35_RS11530	PF03605	Anaerobic c4-dicarboxylate membrane transporter
BF35_RS11535	PF02581	Thiamine monophosphate synthase
BF35_RS11540	PF02110	Hydroxyethylthiazole kinase family
BF35_RS11545	PF01131	DNA topoisomerase
BF35_RS11545	PF01751	Toprim domain
BF35_RS11550	PF01061	ABC-2 type transporter
BF35_RS11555	PF03372	Endonuclease/Exonuclease/phosphatase family
BF35_RS11560	PF00367	phosphotransferase system, EIIB
BF35_RS11560	PF02378	Phosphotransferase system, EIIC 
BF35_RS11560	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
BF35_RS11565	PF00128	Alpha amylase, catalytic domain
BF35_RS11565	PF16657	Maltogenic Amylase, C-terminal domain
BF35_RS11570	PF01565	FAD binding domain 
BF35_RS11570	PF08031	Berberine and berberine like 
BF35_RS11580	PF00027	Cyclic nucleotide-binding domain
BF35_RS11580	PF13545	Crp-like helix-turn-helix domain
BF35_RS11585	PF00696	Amino acid kinase family
BF35_RS11590	PF13520	Amino acid permease
BF35_RS11595	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
BF35_RS11595	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
BF35_RS11605	PF01316	Arginine repressor, DNA binding domain
BF35_RS11605	PF02863	Arginine repressor, C-terminal domain
BF35_RS11610	PF00672	HAMP domain
BF35_RS11610	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS11610	PF02743	Cache domain
BF35_RS11615	PF00005	ABC transporter
BF35_RS11620	PF00497	Bacterial extracellular solute-binding proteins, family 3
BF35_RS11625	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS11635	PF01266	FAD dependent oxidoreductase
BF35_RS11635	PF00355	Rieske [2Fe-2S] domain
BF35_RS11640	PF07690	Major Facilitator Superfamily
BF35_RS11645	PF10127	RNA repair pathway DNA polymerase beta family
BF35_RS11690	PF12728	Helix-turn-helix domain
BF35_RS11705	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS11710	PF01497	Periplasmic binding protein
BF35_RS11715	PF01032	FecCD transport family
BF35_RS11720	PF01032	FecCD transport family
BF35_RS11725	PF00596	Class II Aldolase and Adducin N-terminal domain
BF35_RS11730	PF01008	Initiation factor 2 subunit family
BF35_RS11735	PF01636	Phosphotransferase enzyme family
BF35_RS11740	PF00578	AhpC/TSA family
BF35_RS11745	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS11745	PF13192	Thioredoxin domain
BF35_RS11755	PF01546	Peptidase family M20/M25/M40
BF35_RS11755	PF07687	Peptidase dimerisation domain
BF35_RS11760	PF03553	Na+/H+ antiporter family
BF35_RS11770	PF13378	Enolase C-terminal domain-like
BF35_RS11770	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
BF35_RS11785	PF07308	Protein of unknown function (DUF1456)
BF35_RS11790	PF13426	PAS domain
BF35_RS11790	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS11790	PF13188	PAS domain
BF35_RS11790	PF00989	PAS fold
BF35_RS11790	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS11795	PF01207	Dihydrouridine synthase (Dus)
BF35_RS11800	PF01938	TRAM domain
BF35_RS11800	PF05958	tRNA (Uracil-5-)-methyltransferase
BF35_RS11800	PF02475	Met-10+ like-protein
BF35_RS11805	PF07662	Na+ dependent nucleoside transporter C-terminus
BF35_RS11805	PF01773	Na+ dependent nucleoside transporter N-terminus
BF35_RS11805	PF07670	Nucleoside recognition
BF35_RS11820	PF02073	Thermophilic metalloprotease (M29)
BF35_RS11825	PF00893	Small Multidrug Resistance protein
BF35_RS11830	PF00171	Aldehyde dehydrogenase family
BF35_RS11835	PF00158	Sigma-54 interaction domain
BF35_RS11840	PF00202	Aminotransferase class-III
BF35_RS11845	PF13419	Haloacid dehalogenase-like hydrolase
BF35_RS11850	PF00781	Diacylglycerol kinase catalytic domain
BF35_RS11855	PF02637	GatB domain
BF35_RS11855	PF02934	GatB/GatE catalytic domain
BF35_RS11860	PF01425	Amidase
BF35_RS11865	PF02686	Glu-tRNAGln amidotransferase C subunit
BF35_RS11870	PF05360	yiaA/B two helix domain
BF35_RS11875	PF01047	MarR family
BF35_RS11880	PF02374	Anion-transporting ATPase
BF35_RS11880	PF17886	HSP20-like domain found in ArsA
BF35_RS11895	PF03180	NLPA lipoprotein
BF35_RS11900	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS11905	PF00005	ABC transporter
BF35_RS11905	PF09383	NIL domain
BF35_RS11910	PF00857	Isochorismatase family
BF35_RS11920	PF00171	Aldehyde dehydrogenase family
BF35_RS11925	PF01925	Sulfite exporter TauE/SafE
BF35_RS11930	PF07537	CamS sex pheromone cAM373 precursor
BF35_RS11935	PF00533	BRCA1 C Terminus (BRCT) domain
BF35_RS11935	PF01653	NAD-dependent DNA ligase adenylation domain
BF35_RS11935	PF03120	NAD-dependent DNA ligase OB-fold domain
BF35_RS11935	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
BF35_RS11935	PF12826	Helix-hairpin-helix motif
BF35_RS11940	PF00580	UvrD/REP helicase N-terminal domain
BF35_RS11940	PF13361	UvrD-like helicase C-terminal domain
BF35_RS11945	PF01884	PcrB family
BF35_RS11970	PF02844	Phosphoribosylglycinamide synthetase, N domain
BF35_RS11970	PF02843	Phosphoribosylglycinamide synthetase, C domain
BF35_RS11970	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
BF35_RS11975	PF01808	AICARFT/IMPCHase bienzyme
BF35_RS11975	PF02142	MGS-like domain
BF35_RS11980	PF00551	Formyl transferase
BF35_RS11985	PF02769	AIR synthase related protein, C-terminal domain
BF35_RS11985	PF00586	AIR synthase related protein, N-terminal domain
BF35_RS11990	PF00156	Phosphoribosyl transferase domain
BF35_RS11995	PF18072	Formylglycinamide ribonucleotide amidotransferase linker domain
BF35_RS11995	PF02769	AIR synthase related protein, C-terminal domain
BF35_RS11995	PF00586	AIR synthase related protein, N-terminal domain
BF35_RS12005	PF02700	Phosphoribosylformylglycinamidine (FGAM) synthase
BF35_RS12010	PF01259	SAICAR synthetase
BF35_RS12015	PF00206	Lyase
BF35_RS12015	PF10397	Adenylosuccinate lyase C-terminus
BF35_RS12020	PF02222	ATP-grasp domain
BF35_RS12020	PF17769	Phosphoribosylaminoimidazole carboxylase C-terminal domain
BF35_RS12025	PF00731	AIR carboxylase
BF35_RS12050	PF00892	EamA-like transporter family
BF35_RS12070	PF01619	Proline dehydrogenase
BF35_RS12075	PF00155	Aminotransferase class I and II
BF35_RS12075	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS12095	PF00535	Glycosyl transferase family 2
BF35_RS12115	PF08241	Methyltransferase domain
BF35_RS12125	PF05045	Rhamnan synthesis protein F
BF35_RS12125	PF14307	Glycosyltransferase WbsX
BF35_RS12145	PF01323	DSBA-like thioredoxin domain
BF35_RS12170	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS12170	PF16736	Single Cache-like 
BF35_RS12170	PF00989	PAS fold
BF35_RS12170	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS12175	PF00072	Response regulator receiver domain
BF35_RS12175	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS12180	PF00860	Permease family
BF35_RS12185	PF00117	Glutamine amidotransferase class-I
BF35_RS12185	PF02540	NAD synthase
BF35_RS12185	PF00958	GMP synthase C terminal domain
BF35_RS12190	PF00118	TCP-1/cpn60 chaperonin family
BF35_RS12195	PF00166	Chaperonin 10 Kd subunit
BF35_RS12200	PF02517	CPBP intramembrane metalloprotease
BF35_RS12210	PF06971	Putative DNA-binding protein N-terminus
BF35_RS12210	PF02629	CoA binding domain
BF35_RS12215	PF16326	ABC transporter C-terminal domain
BF35_RS12215	PF12848	ABC transporter
BF35_RS12215	PF00005	ABC transporter
BF35_RS12220	PF00814	Glycoprotease family
BF35_RS12225	PF00583	Acetyltransferase (GNAT) family
BF35_RS12230	PF00814	Glycoprotease family
BF35_RS12235	PF02367	Threonylcarbamoyl adenosine biosynthesis protein TsaE
BF35_RS12320	PF10263	SprT-like family
BF35_RS12320	PF17283	SprT-like zinc ribbon domain
BF35_RS12330	PF09371	Tex-like protein N-terminal domain
BF35_RS12330	PF16921	Tex protein YqgF-like domain
BF35_RS12330	PF17674	HHH domain
BF35_RS12330	PF00575	S1 RNA binding domain
BF35_RS12335	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system
BF35_RS12340	PF01402	Ribbon-helix-helix protein, copG family
BF35_RS12345	PF01168	Alanine racemase, N-terminal domain
BF35_RS12345	PF00842	Alanine racemase, C-terminal domain
BF35_RS12355	PF01648	4'-phosphopantetheinyl transferase superfamily
BF35_RS12360	PF01694	Rhomboid family
BF35_RS12365	PF03851	UV-endonuclease UvdE
BF35_RS12370	PF00270	DEAD/DEAH box helicase
BF35_RS12370	PF00271	Helicase conserved C-terminal domain
BF35_RS12375	PF08245	Mur ligase middle domain
BF35_RS12375	PF01225	Mur ligase family, catalytic domain
BF35_RS12375	PF02875	Mur ligase family, glutamate ligase domain
BF35_RS12380	PF07478	D-ala D-ala ligase C-terminus
BF35_RS12380	PF01820	D-ala D-ala ligase N-terminus
BF35_RS12385	PF07690	Major Facilitator Superfamily
BF35_RS12390	PF13520	Amino acid permease
BF35_RS12400	PF01557	Fumarylacetoacetate (FAA) hydrolase family
BF35_RS12405	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS12445	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BF35_RS12445	PF00005	ABC transporter
BF35_RS12450	PF00005	ABC transporter
BF35_RS12450	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BF35_RS12455	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS12455	PF12911	N-terminal TM domain of oligopeptide transport permease C
BF35_RS12460	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS12465	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS12475	PF16326	ABC transporter C-terminal domain
BF35_RS12475	PF00005	ABC transporter
BF35_RS12475	PF12848	ABC transporter
BF35_RS12500	PF10096	Uncharacterized protein conserved in bacteria (DUF2334)
BF35_RS12510	PF01026	TatD related DNase
BF35_RS12525	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS12525	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF35_RS12535	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS12535	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
BF35_RS12545	PF01553	Acyltransferase
BF35_RS12555	PF14142	YrzO-like protein
BF35_RS12560	PF00892	EamA-like transporter family
BF35_RS12565	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS12565	PF03466	LysR substrate binding domain
BF35_RS12580	PF12728	Helix-turn-helix domain
BF35_RS12580	PF12727	PBP superfamily domain
BF35_RS12590	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS12595	PF06800	Sugar transport protein
BF35_RS12600	PF14748	Pyrroline-5-carboxylate reductase dimerisation
BF35_RS12600	PF03807	NADP oxidoreductase coenzyme F420-dependent
BF35_RS12605	PF00248	Aldo/keto reductase family
BF35_RS12610	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS12615	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS12630	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS12635	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BF35_RS12635	PF00005	ABC transporter
BF35_RS12640	PF00005	ABC transporter
BF35_RS12640	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BF35_RS12645	PF12911	N-terminal TM domain of oligopeptide transport permease C
BF35_RS12645	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS12650	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS12665	PF07690	Major Facilitator Superfamily
BF35_RS12675	PF07690	Major Facilitator Superfamily
BF35_RS12680	PF01565	FAD binding domain 
BF35_RS12690	PF00107	Zinc-binding dehydrogenase
BF35_RS12690	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS12715	PF00930	Dipeptidyl peptidase IV (DPP IV) N-terminal region
BF35_RS12715	PF00326	Prolyl oligopeptidase family
BF35_RS12720	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
BF35_RS12720	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
BF35_RS12725	PF02447	GntP family permease
BF35_RS12730	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
BF35_RS12730	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
BF35_RS12735	PF07729	FCD domain
BF35_RS12735	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS12740	PF00561	alpha/beta hydrolase fold
BF35_RS12745	PF00144	Beta-lactamase
BF35_RS12750	PF01380	SIS domain
BF35_RS12760	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
BF35_RS12760	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
BF35_RS12760	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
BF35_RS12760	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
BF35_RS12765	PF07949	YbbR-like protein
BF35_RS12770	PF02457	DisA bacterial checkpoint controller nucleotide-binding
BF35_RS12775	PF00491	Arginase family
BF35_RS12780	PF02595	Glycerate kinase family
BF35_RS12855	PF14089	KinB-signalling pathway activation in sporulation
BF35_RS12860	PF17898	Spore germination GerD central core domain
BF35_RS12865	PF10609	NUBPL iron-transfer P-loop NTPase
BF35_RS12870	PF01520	N-acetylmuramoyl-L-alanine amidase
BF35_RS12880	PF00380	Ribosomal protein S9/S16
BF35_RS12885	PF00572	Ribosomal protein L13
BF35_RS12890	PF01416	tRNA pseudouridine synthase
BF35_RS12895	PF02361	Cobalt transport protein
BF35_RS12900	PF00005	ABC transporter
BF35_RS12905	PF00005	ABC transporter
BF35_RS12910	PF01196	Ribosomal protein L17
BF35_RS12915	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
BF35_RS12915	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
BF35_RS12915	PF01000	RNA polymerase Rpb3/RpoA insert domain
BF35_RS12920	PF00411	Ribosomal protein S11
BF35_RS12925	PF00416	Ribosomal protein S13/S18
BF35_RS12930	PF00444	Ribosomal protein L36
BF35_RS12935	PF01176	Translation initiation factor 1A / IF-1
BF35_RS12940	PF00557	Metallopeptidase family M24
BF35_RS12945	PF05191	Adenylate kinase, active site lid
BF35_RS12950	PF00344	SecY translocase
BF35_RS12955	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
BF35_RS12960	PF00327	Ribosomal protein L30p/L7e
BF35_RS12965	PF03719	Ribosomal protein S5, C-terminal domain
BF35_RS12965	PF00333	Ribosomal protein S5, N-terminal domain
BF35_RS12970	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
BF35_RS12975	PF00347	Ribosomal protein L6
BF35_RS12980	PF00410	Ribosomal protein S8
BF35_RS12985	PF00253	Ribosomal protein S14p/S29e
BF35_RS12990	PF00673	ribosomal L5P family C-terminus
BF35_RS12990	PF00281	Ribosomal protein L5
BF35_RS12995	PF00467	KOW motif
BF35_RS12995	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24
BF35_RS13000	PF00238	Ribosomal protein L14p/L23e
BF35_RS13005	PF00366	Ribosomal protein S17
BF35_RS13010	PF00831	Ribosomal L29 protein
BF35_RS13015	PF00252	Ribosomal protein L16p/L10e
BF35_RS13020	PF07650	KH domain
BF35_RS13020	PF00189	Ribosomal protein S3, C-terminal domain
BF35_RS13025	PF00237	Ribosomal protein L22p/L17e
BF35_RS13030	PF00203	Ribosomal protein S19
BF35_RS13035	PF03947	Ribosomal Proteins L2, C-terminal domain
BF35_RS13035	PF00181	Ribosomal Proteins L2, RNA binding domain
BF35_RS13040	PF00276	Ribosomal protein L23
BF35_RS13045	PF00573	Ribosomal protein L4/L1 family
BF35_RS13050	PF00297	Ribosomal protein L3
BF35_RS13055	PF00338	Ribosomal protein S10p/S20e
BF35_RS13060	PF00009	Elongation factor Tu GTP binding domain
BF35_RS13060	PF03143	Elongation factor Tu C-terminal domain
BF35_RS13060	PF03144	Elongation factor Tu domain 2
BF35_RS13065	PF14492	Elongation Factor G, domain II
BF35_RS13065	PF03764	Elongation factor G, domain IV
BF35_RS13065	PF00009	Elongation factor Tu GTP binding domain
BF35_RS13065	PF00679	Elongation factor G C-terminus
BF35_RS13065	PF03144	Elongation factor Tu domain 2
BF35_RS13070	PF00177	Ribosomal protein S7p/S5e
BF35_RS13075	PF00164	Ribosomal protein S12/S23
BF35_RS13080	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
BF35_RS13085	PF00623	RNA polymerase Rpb1, domain 2
BF35_RS13085	PF04998	RNA polymerase Rpb1, domain 5
BF35_RS13085	PF04997	RNA polymerase Rpb1, domain 1
BF35_RS13085	PF05000	RNA polymerase Rpb1, domain 4
BF35_RS13085	PF04983	RNA polymerase Rpb1, domain 3
BF35_RS13090	PF10385	RNA polymerase beta subunit external 1 domain
BF35_RS13090	PF04565	RNA polymerase Rpb2, domain 3
BF35_RS13090	PF04561	RNA polymerase Rpb2, domain 2
BF35_RS13090	PF00562	RNA polymerase Rpb2, domain 6
BF35_RS13090	PF04560	RNA polymerase Rpb2, domain 7
BF35_RS13090	PF04563	RNA polymerase beta subunit
BF35_RS13095	PF05175	Methyltransferase small domain
BF35_RS13100	PF00542	Ribosomal protein L7/L12 C-terminal domain
BF35_RS13100	PF16320	Ribosomal protein L7/L12 dimerisation domain
BF35_RS13105	PF00466	Ribosomal protein L10
BF35_RS13110	PF00687	Ribosomal protein L1p/L10e family
BF35_RS13115	PF03946	Ribosomal protein L11, N-terminal domain
BF35_RS13115	PF00298	Ribosomal protein L11, RNA binding domain
BF35_RS13120	PF00467	KOW motif
BF35_RS13120	PF02357	Transcription termination factor nusG
BF35_RS13125	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
BF35_RS13130	PF00471	Ribosomal protein L33
BF35_RS13135	PF08281	Sigma-70, region 4
BF35_RS13135	PF04542	Sigma-70 region 2 
BF35_RS13140	PF05991	YacP-like NYN domain
BF35_RS13145	PF08032	RNA 2'-O ribose methyltransferase substrate binding
BF35_RS13145	PF00588	SpoU rRNA Methylase family
BF35_RS13150	PF00636	Ribonuclease III domain
BF35_RS13155	PF01406	tRNA synthetases class I (C) catalytic domain
BF35_RS13155	PF09190	DALR domain
BF35_RS13160	PF00132	Bacterial transferase hexapeptide (six repeats)
BF35_RS13160	PF06426	Serine acetyltransferase, N-terminal 
BF35_RS13170	PF02542	YgbB family
BF35_RS13175	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
BF35_RS13185	PF02457	DisA bacterial checkpoint controller nucleotide-binding
BF35_RS13185	PF10635	DisA bacterial checkpoint controller linker region 
BF35_RS13190	PF18073	Rubredoxin metal binding domain
BF35_RS13195	PF00004	ATPase family associated with various cellular activities (AAA)
BF35_RS13195	PF17871	AAA lid domain
BF35_RS13195	PF02861	Clp amino terminal domain, pathogenicity island component
BF35_RS13195	PF10431	C-terminal, D2-small domain, of ClpB protein 
BF35_RS13195	PF07724	AAA domain (Cdc48 subfamily)
BF35_RS13200	PF00217	ATP:guanido phosphotransferase, C-terminal catalytic domain
BF35_RS13205	PF02151	UvrB/uvrC motif
BF35_RS13210	PF17727	CtsR C-terminal dimerization domain
BF35_RS13210	PF05848	CtsR N-terminal HTH domain
BF35_RS13290	PF01336	OB-fold nucleic acid binding domain
BF35_RS13290	PF00152	tRNA synthetases class II (D, K and N) 
BF35_RS13295	PF01207	Dihydrouridine synthase (Dus)
BF35_RS13300	PF01381	Helix-turn-helix
BF35_RS13305	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
BF35_RS13310	PF02152	Dihydroneopterin aldolase
BF35_RS13315	PF00809	Pterin binding enzyme
BF35_RS13320	PF01063	Amino-transferase class IV
BF35_RS13325	PF00117	Glutamine amidotransferase class-I
BF35_RS13330	PF04715	Anthranilate synthase component I, N terminal region
BF35_RS13330	PF00425	chorismate binding enzyme
BF35_RS13335	PF00291	Pyridoxal-phosphate dependent enzyme
BF35_RS13340	PF01430	Hsp33 protein
BF35_RS13345	PF03309	Type III pantothenate kinase
BF35_RS13350	PF01434	Peptidase family M41
BF35_RS13350	PF06480	FtsH Extracellular
BF35_RS13350	PF17862	AAA+ lid domain
BF35_RS13350	PF00004	ATPase family associated with various cellular activities (AAA)
BF35_RS13355	PF00156	Phosphoribosyl transferase domain
BF35_RS13360	PF01171	PP-loop family
BF35_RS13360	PF11734	TilS substrate C-terminal domain
BF35_RS13360	PF09179	TilS substrate binding domain
BF35_RS13365	PF07228	Stage II sporulation protein E (SpoIIE)
BF35_RS13380	PF00575	S1 RNA binding domain
BF35_RS13390	PF09578	Spore cortex protein YabQ (Spore_YabQ)
BF35_RS13395	PF07873	YabP family
BF35_RS13400	PF01479	S4 domain
BF35_RS13405	PF03819	MazG nucleotide pyrophosphohydrolase domain
BF35_RS13405	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BF35_RS13410	PF14667	Polysaccharide biosynthesis C-terminal domain
BF35_RS13410	PF01943	Polysaccharide biosynthesis protein
BF35_RS13415	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin
BF35_RS13415	PF15714	Stage V sporulation protein T C-terminal, transcription factor
BF35_RS13420	PF03461	TRCF domain
BF35_RS13420	PF17757	UvrB interaction domain
BF35_RS13420	PF02559	CarD-like/TRCF domain
BF35_RS13420	PF00270	DEAD/DEAH box helicase
BF35_RS13420	PF00271	Helicase conserved C-terminal domain
BF35_RS13430	PF01195	Peptidyl-tRNA hydrolase
BF35_RS13435	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
BF35_RS13435	PF14572	Phosphoribosyl synthetase-associated domain
BF35_RS13440	PF00483	Nucleotidyl transferase
BF35_RS13440	PF00132	Bacterial transferase hexapeptide (six repeats)
BF35_RS13445	PF04026	SpoVG
BF35_RS13450	PF01042	Endoribonuclease L-PSP
BF35_RS13455	PF09182	Bacterial purine repressor, N-terminal
BF35_RS13455	PF00156	Phosphoribosyl transferase domain
BF35_RS13460	PF00288	GHMP kinases N terminal domain
BF35_RS13460	PF08544	GHMP kinases C terminal 
BF35_RS13465	PF00269	Small, acid-soluble spore proteins, alpha/beta type
BF35_RS13470	PF06257	Biofilm formation stimulator VEG
BF35_RS13475	PF05582	YabG peptidase U57
BF35_RS13480	PF00398	Ribosomal RNA adenine dimethylase
BF35_RS13485	PF13662	Toprim domain
BF35_RS13485	PF13331	Domain of unknown function (DUF4093)
BF35_RS13490	PF01026	TatD related DNase
BF35_RS13495	PF08264	Anticodon-binding domain of tRNA
BF35_RS13495	PF09334	tRNA synthetases class I (M)
BF35_RS13495	PF01588	Putative tRNA binding domain
BF35_RS13500	PF18277	AbrB C-terminal domain
BF35_RS13500	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin
BF35_RS13505	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BF35_RS13510	PF01541	GIY-YIG catalytic domain
BF35_RS13515	PF05175	Methyltransferase small domain
BF35_RS13520	PF06156	Initiation control protein YabA
BF35_RS13525	PF04468	PSP1 C-terminal conserved region
BF35_RS13530	PF09115	DNA polymerase III, delta subunit, C terminal
BF35_RS13535	PF02223	Thymidylate kinase
BF35_RS13540	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
BF35_RS13540	PF01276	Orn/Lys/Arg decarboxylase, major domain
BF35_RS13575	PF07441	SigmaK-factor processing regulatory protein BofA
BF35_RS13580	PF10704	Protein of unknown function (DUF2508)
BF35_RS13585	PF13662	Toprim domain
BF35_RS13585	PF02132	RecR protein
BF35_RS13590	PF02575	YbaB/EbfC DNA-binding family
BF35_RS13595	PF12169	DNA polymerase III subunits gamma and tau domain III
BF35_RS13600	PF14437	MafB19-like deaminase
BF35_RS13610	PF00857	Isochorismatase family
BF35_RS13615	PF01712	Deoxynucleoside kinase
BF35_RS13620	PF01712	Deoxynucleoside kinase
BF35_RS13635	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BF35_RS13635	PF02403	Seryl-tRNA synthetase N-terminal domain
BF35_RS13640	PF01174	SNO glutamine amidotransferase family
BF35_RS13645	PF01680	SOR/SNZ family
BF35_RS13650	PF00768	D-alanyl-D-alanine carboxypeptidase
BF35_RS13650	PF07943	Penicillin-binding protein 5, C-terminal domain
BF35_RS13655	PF00478	IMP dehydrogenase / GMP reductase domain
BF35_RS13655	PF00571	CBS domain
BF35_RS13660	PF14175	YaaC-like Protein
BF35_RS13690	PF00521	DNA gyrase/topoisomerase IV, subunit A
BF35_RS13690	PF03989	DNA gyrase C-terminal domain, beta-propeller
BF35_RS13695	PF01751	Toprim domain
BF35_RS13695	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS13695	PF00204	DNA gyrase B
BF35_RS13695	PF00986	DNA gyrase B subunit, carboxyl terminus
BF35_RS13700	PF02463	RecF/RecN/SMC N terminal domain
BF35_RS13710	PF00712	DNA polymerase III beta subunit, N-terminal domain
BF35_RS13710	PF02767	DNA polymerase III beta subunit, central domain
BF35_RS13710	PF02768	DNA polymerase III beta subunit, C-terminal domain
BF35_RS13715	PF11638	DnaA N-terminal domain
BF35_RS13715	PF00308	Bacterial dnaA  protein
BF35_RS13715	PF08299	Bacterial dnaA protein helix-turn-helix
BF35_RS13720	PF00468	Ribosomal protein L34
BF35_RS13725	PF00825	Ribonuclease P
BF35_RS13730	PF02096	60Kd inner membrane protein
BF35_RS13735	PF14804	Jag N-terminus
BF35_RS13735	PF01424	R3H domain
BF35_RS13740	PF12631	MnmE helical domain
BF35_RS13740	PF01926	50S ribosome-binding GTPase
BF35_RS13740	PF10396	GTP-binding protein TrmE N-terminus
BF35_RS13745	PF01134	Glucose inhibited division protein A
BF35_RS13745	PF13932	GidA associated domain
BF35_RS13750	PF02527	rRNA small subunit methyltransferase G
BF35_RS13755	PF17762	HTH domain found in ParB protein
BF35_RS13755	PF02195	ParB-like nuclease domain
BF35_RS13760	PF13614	AAA domain
BF35_RS13765	PF02195	ParB-like nuclease domain
BF35_RS13765	PF17762	HTH domain found in ParB protein
BF35_RS13770	PF06866	Protein of unknown function (DUF1256)
BF35_RS13775	PF00924	Mechanosensitive ion channel
BF35_RS13780	PF06107	Bacterial protein of unknown function (DUF951)
BF35_RS13785	PF01926	50S ribosome-binding GTPase
BF35_RS13785	PF06071	Protein of unknown function (DUF933)
BF35_RS13790	PF01250	Ribosomal protein S6
BF35_RS13795	PF00436	Single-strand binding protein family
BF35_RS13800	PF01084	Ribosomal protein S18
BF35_RS13805	PF09991	Predicted membrane protein (DUF2232)
BF35_RS13810	PF01368	DHH family
BF35_RS13810	PF02272	DHHA1 domain
BF35_RS13815	PF01281	Ribosomal protein L9, N-terminal domain
BF35_RS13815	PF03948	Ribosomal protein L9, C-terminal domain
BF35_RS13820	PF03796	DnaB-like helicase C terminal domain
BF35_RS13820	PF00772	DnaB-like helicase N terminal domain
BF35_RS13825	PF00709	Adenylosuccinate synthetase
BF35_RS13850	PF00072	Response regulator receiver domain
BF35_RS13850	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS13855	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS13855	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS13855	PF13426	PAS domain
BF35_RS13855	PF00672	HAMP domain
BF35_RS13860	PF07435	YycH protein
BF35_RS13865	PF09648	YycH protein
BF35_RS13870	PF00753	Metallo-beta-lactamase superfamily
BF35_RS13875	PF13180	PDZ domain
BF35_RS13885	PF02590	Predicted SPOUT methyltransferase
BF35_RS13895	PF01432	Peptidase family M3
BF35_RS13895	PF08439	Oligopeptidase F
BF35_RS13900	PF00478	IMP dehydrogenase / GMP reductase domain
BF35_RS13910	PF00270	DEAD/DEAH box helicase
BF35_RS13910	PF00271	Helicase conserved C-terminal domain
BF35_RS13910	PF03880	DbpA RNA binding domain   
BF35_RS13920	PF03006	Haemolysin-III related
BF35_RS13925	PF16363	GDP-mannose 4,6 dehydratase
BF35_RS13935	PF02293	AmiS/UreI family transporter
BF35_RS13945	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
BF35_RS13945	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
BF35_RS13950	PF02898	Nitric oxide synthase, oxygenase domain
BF35_RS13955	PF02028	BCCT, betaine/carnitine/choline family transporter
BF35_RS13960	PF07690	Major Facilitator Superfamily
BF35_RS13965	PF06580	Histidine kinase
BF35_RS13965	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS13965	PF13492	GAF domain
BF35_RS13965	PF07694	5TMR of 5TMR-LYT
BF35_RS13970	PF00072	Response regulator receiver domain
BF35_RS13970	PF04397	LytTr DNA-binding domain
BF35_RS13975	PF03788	LrgA family
BF35_RS13980	PF04172	LrgB-like family 
BF35_RS13985	PF01594	AI-2E family transporter
BF35_RS13990	PF01641	SelR domain
BF35_RS13990	PF01625	Peptide methionine sulfoxide reductase
BF35_RS13995	PF00873	AcrB/AcrD/AcrF family
BF35_RS14000	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS14005	PF00535	Glycosyl transferase family 2
BF35_RS14025	PF00005	ABC transporter
BF35_RS14025	PF12848	ABC transporter
BF35_RS14030	PF00535	Glycosyl transferase family 2
BF35_RS14040	PF03061	Thioesterase superfamily
BF35_RS14050	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS14055	PF03458	UPF0126 domain
BF35_RS14070	PF03808	Glycosyl transferase WecB/TagA/CpsF family
BF35_RS14075	PF07690	Major Facilitator Superfamily
BF35_RS14080	PF04397	LytTr DNA-binding domain
BF35_RS14080	PF00072	Response regulator receiver domain
BF35_RS14085	PF13722	5TM C-terminal transporter carbon starvation CstA
BF35_RS14085	PF02554	Carbon starvation protein CstA
BF35_RS14090	PF04328	Selenoprotein, putative 
BF35_RS14095	PF07694	5TMR of 5TMR-LYT
BF35_RS14095	PF00990	Diguanylate cyclase, GGDEF domain
BF35_RS14100	PF08543	Phosphomethylpyrimidine kinase
BF35_RS14105	PF13185	GAF domain
BF35_RS14105	PF07730	Histidine kinase
BF35_RS14110	PF00072	Response regulator receiver domain
BF35_RS14110	PF00196	Bacterial regulatory proteins, luxR family
BF35_RS14115	PF02525	Flavodoxin-like fold
BF35_RS14120	PF00027	Cyclic nucleotide-binding domain
BF35_RS14125	PF13419	Haloacid dehalogenase-like hydrolase
BF35_RS14135	PF01053	Cys/Met metabolism PLP-dependent enzyme
BF35_RS14140	PF04204	Homoserine O-succinyltransferase 
BF35_RS14145	PF00742	Homoserine dehydrogenase
BF35_RS14145	PF03447	Homoserine dehydrogenase, NAD binding domain
BF35_RS14145	PF01842	ACT domain
BF35_RS14155	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
BF35_RS14155	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS14160	PF13472	GDSL-like Lipase/Acylhydrolase family
BF35_RS14165	PF00005	ABC transporter
BF35_RS14170	PF12679	ABC-2 family transporter protein
BF35_RS14175	PF03167	Uracil DNA glycosylase superfamily
BF35_RS14180	PF12823	Domain of unknown function (DUF3817)
BF35_RS14190	PF00860	Permease family
BF35_RS14195	PF02254	TrkA-N domain
BF35_RS14195	PF07885	Ion channel
BF35_RS14205	PF04241	Protein of unknown function (DUF423)
BF35_RS14210	PF09671	Spore coat protein (Spore_GerQ)
BF35_RS14215	PF07486	Cell Wall Hydrolase
BF35_RS14220	PF07943	Penicillin-binding protein 5, C-terminal domain
BF35_RS14220	PF00768	D-alanyl-D-alanine carboxypeptidase
BF35_RS14225	PF06778	Chlorite dismutase
BF35_RS14230	PF01515	Phosphate acetyl/butaryl transferase
BF35_RS14235	PF03099	Biotin/lipoate A/B protein ligase family
BF35_RS14250	PF07293	Protein of unknown function (DUF1450)
BF35_RS14255	PF01032	FecCD transport family
BF35_RS14260	PF01032	FecCD transport family
BF35_RS14265	PF00005	ABC transporter
BF35_RS14270	PF01497	Periplasmic binding protein
BF35_RS14275	PF01966	HD domain
BF35_RS14280	PF01361	Tautomerase enzyme
BF35_RS14285	PF02163	Peptidase family M50
BF35_RS14290	PF08741	YwhD family
BF35_RS14295	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS14295	PF00912	Transglycosylase
BF35_RS14300	PF03009	Glycerophosphoryl diester phosphodiesterase family
BF35_RS14305	PF13411	MerR HTH family regulatory protein
BF35_RS14310	PF07690	Major Facilitator Superfamily
BF35_RS14315	PF17284	Spermidine synthase tetramerisation domain
BF35_RS14320	PF00491	Arginase family
BF35_RS14340	PF17676	LD-carboxypeptidase C-terminal domain
BF35_RS14340	PF02016	LD-carboxypeptidase N-terminal domain
BF35_RS14345	PF09148	Domain of unknown function (DUF1934)
BF35_RS14350	PF05746	DALR anticodon binding domain
BF35_RS14350	PF00750	tRNA synthetases class I (R)
BF35_RS14350	PF03485	Arginyl tRNA synthetase N terminal domain
BF35_RS14375	PF05738	Cna protein B-type domain
BF35_RS14375	PF05737	Collagen binding domain
BF35_RS14375	PF17802	Prealbumin-like fold domain
BF35_RS14380	PF04389	Peptidase family M28
BF35_RS14380	PF02225	PA domain
BF35_RS14385	PF00557	Metallopeptidase family M24
BF35_RS14390	PF00005	ABC transporter
BF35_RS14400	PF07730	Histidine kinase
BF35_RS14400	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS14405	PF00072	Response regulator receiver domain
BF35_RS14405	PF00196	Bacterial regulatory proteins, luxR family
BF35_RS14425	PF03707	Bacterial signalling protein N terminal repeat
BF35_RS14425	PF00563	EAL domain
BF35_RS14425	PF00990	Diguanylate cyclase, GGDEF domain
BF35_RS14430	PF03851	UV-endonuclease UvdE
BF35_RS14435	PF13091	PLD-like domain
BF35_RS14440	PF13183	4Fe-4S dicluster domain
BF35_RS14440	PF02754	Cysteine-rich domain
BF35_RS14445	PF00108	Thiolase, N-terminal domain
BF35_RS14445	PF02803	Thiolase, C-terminal domain
BF35_RS14455	PF02770	Acyl-CoA dehydrogenase, middle domain
BF35_RS14455	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
BF35_RS14455	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
BF35_RS14460	PF02770	Acyl-CoA dehydrogenase, middle domain
BF35_RS14460	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
BF35_RS14460	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
BF35_RS14470	PF05066	HB1, ASXL, restriction endonuclease HTH domain
BF35_RS14475	PF00117	Glutamine amidotransferase class-I
BF35_RS14475	PF06418	CTP synthase N-terminus
BF35_RS14480	PF10740	Domain of unknown function (DUF2529)
BF35_RS14485	PF00072	Response regulator receiver domain
BF35_RS14490	PF01116	Fructose-bisphosphate aldolase class-II
BF35_RS14495	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
BF35_RS14500	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
BF35_RS14505	PF07498	Rho termination factor, N-terminal domain
BF35_RS14505	PF07497	Rho termination factor, RNA-binding domain
BF35_RS14505	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BF35_RS14510	PF01197	Ribosomal protein L31
BF35_RS14515	PF00265	Thymidine kinase
BF35_RS14520	PF00472	RF-1 domain
BF35_RS14520	PF03462	PCRF domain
BF35_RS14525	PF13847	Methyltransferase domain
BF35_RS14525	PF17827	PrmC N-terminal domain
BF35_RS14530	PF09551	Stage II sporulation protein R (spore_II_R)
BF35_RS14540	PF01300	Telomere recombination
BF35_RS14540	PF03481	Putative GTP-binding controlling metal-binding
BF35_RS14545	PF02659	Putative manganese efflux pump
BF35_RS14555	PF01613	Flavin reductase like domain
BF35_RS14560	PF07681	DoxX
BF35_RS14565	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
BF35_RS14570	PF01451	Low molecular weight phosphotyrosine protein phosphatase
BF35_RS14575	PF02502	Ribose/Galactose Isomerase
BF35_RS14580	PF04260	Protein of unknown function (DUF436) 
BF35_RS14585	PF00464	Serine hydroxymethyltransferase
BF35_RS14605	PF03899	ATP synthase I chain
BF35_RS14610	PF00119	ATP synthase A chain
BF35_RS14615	PF00137	ATP synthase subunit C
BF35_RS14620	PF00430	ATP synthase B/B' CF(0)
BF35_RS14625	PF00213	ATP synthase delta (OSCP) subunit
BF35_RS14630	PF02874	ATP synthase alpha/beta family, beta-barrel domain
BF35_RS14630	PF00306	ATP synthase alpha/beta chain, C terminal domain
BF35_RS14630	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BF35_RS14635	PF00231	ATP synthase
BF35_RS14640	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BF35_RS14640	PF02874	ATP synthase alpha/beta family, beta-barrel domain
BF35_RS14645	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
BF35_RS14645	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
BF35_RS14660	PF03707	Bacterial signalling protein N terminal repeat
BF35_RS14660	PF00563	EAL domain
BF35_RS14660	PF00990	Diguanylate cyclase, GGDEF domain
BF35_RS14665	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
BF35_RS14670	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
BF35_RS14675	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
BF35_RS14680	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
BF35_RS14685	PF00146	NADH dehydrogenase
BF35_RS14695	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
BF35_RS14700	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
BF35_RS14705	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
BF35_RS14705	PF01010	NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus
BF35_RS14705	PF00361	Proton-conducting membrane transporter
BF35_RS14710	PF00361	Proton-conducting membrane transporter
BF35_RS14715	PF00361	Proton-conducting membrane transporter
BF35_RS14720	PF06612	Protein of unknown function (DUF1146)
BF35_RS14730	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
BF35_RS14735	PF08486	Stage II sporulation protein
BF35_RS14740	PF04397	LytTr DNA-binding domain
BF35_RS14740	PF00072	Response regulator receiver domain
BF35_RS14745	PF00005	ABC transporter
BF35_RS14755	PF01551	Peptidase family M23
BF35_RS14765	PF12116	Stage III sporulation protein D
BF35_RS14775	PF01467	Cytidylyltransferase-like
BF35_RS14785	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 
BF35_RS14790	PF00534	Glycosyl transferases group 1
BF35_RS14795	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
BF35_RS14795	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
BF35_RS14800	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 
BF35_RS14805	PF01061	ABC-2 type transporter
BF35_RS14810	PF08239	Bacterial SH3 domain
BF35_RS14810	PF00005	ABC transporter
BF35_RS14815	PF00483	Nucleotidyl transferase
BF35_RS14825	PF07977	FabA-like domain
BF35_RS14830	PF03816	Cell envelope-related transcriptional attenuator domain
BF35_RS14840	PF16363	GDP-mannose 4,6 dehydratase
BF35_RS14845	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS14845	PF00072	Response regulator receiver domain
BF35_RS14850	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS14850	PF00989	PAS fold
BF35_RS14850	PF16736	Single Cache-like 
BF35_RS14850	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS14865	PF07690	Major Facilitator Superfamily
BF35_RS14875	PF00005	ABC transporter
BF35_RS14880	PF12704	MacB-like periplasmic core domain
BF35_RS14880	PF02687	FtsX-like permease family
BF35_RS14885	PF04893	Yip1 domain
BF35_RS14920	PF00271	Helicase conserved C-terminal domain
BF35_RS14920	PF12419	SNF2 Helicase protein 
BF35_RS14920	PF00176	SNF2 family N-terminal domain
BF35_RS14925	PF04434	SWIM zinc finger
BF35_RS14950	PF06725	3D domain
BF35_RS14950	PF01476	LysM domain
BF35_RS14955	PF02028	BCCT, betaine/carnitine/choline family transporter
BF35_RS14975	PF07662	Na+ dependent nucleoside transporter C-terminus
BF35_RS14975	PF01773	Na+ dependent nucleoside transporter N-terminus
BF35_RS14980	PF00877	NlpC/P60 family
BF35_RS14980	PF01476	LysM domain
BF35_RS14985	PF01063	Amino-transferase class IV
BF35_RS14990	PF00884	Sulfatase
BF35_RS15000	PF09988	Uncharacterized metal-binding protein (DUF2227)
BF35_RS15010	PF02652	L-lactate permease
BF35_RS15015	PF13667	ThiC-associated domain 
BF35_RS15015	PF01964	Radical SAM ThiC family
BF35_RS15020	PF02040	Arsenical pump membrane protein
BF35_RS15025	PF02322	Cytochrome bd terminal oxidase subunit II
BF35_RS15030	PF01654	Cytochrome bd terminal oxidase subunit I
BF35_RS15045	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS15045	PF03466	LysR substrate binding domain
BF35_RS15055	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS15065	PF00375	Sodium:dicarboxylate symporter family
BF35_RS15070	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
BF35_RS15075	PF02378	Phosphotransferase system, EIIC 
BF35_RS15080	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
BF35_RS15085	PF02675	S-adenosylmethionine decarboxylase 
BF35_RS15095	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
BF35_RS15100	PF02378	Phosphotransferase system, EIIC 
BF35_RS15105	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
BF35_RS15110	PF02056	Family 4 glycosyl hydrolase
BF35_RS15110	PF11975	Family 4 glycosyl hydrolase C-terminal domain
BF35_RS15115	PF04794	YdjC-like protein
BF35_RS15120	PF02417	Chromate transporter
BF35_RS15130	PF03610	PTS system fructose IIA component
BF35_RS15130	PF00874	PRD domain
BF35_RS15130	PF00158	Sigma-54 interaction domain
BF35_RS15135	PF01522	Polysaccharide deacetylase
BF35_RS15140	PF00953	Glycosyl transferase family 4
BF35_RS15145	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
BF35_RS15145	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
BF35_RS15145	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
BF35_RS15150	PF02350	UDP-N-acetylglucosamine 2-epimerase
BF35_RS15155	PF03816	Cell envelope-related transcriptional attenuator domain
BF35_RS15160	PF09186	Domain of unknown function (DUF1949)
BF35_RS15160	PF01205	Uncharacterized protein family UPF0029
BF35_RS15165	PF02645	Uncharacterised protein, DegV family COG1307
BF35_RS15175	PF01638	HxlR-like helix-turn-helix
BF35_RS15180	PF00877	NlpC/P60 family
BF35_RS15180	PF01476	LysM domain
BF35_RS15185	PF00271	Helicase conserved C-terminal domain
BF35_RS15185	PF04851	Type III restriction enzyme, res subunit
BF35_RS15195	PF00313	'Cold-shock' DNA-binding domain
BF35_RS15200	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
BF35_RS15200	PF16321	Sigma 54 modulation/S30EA ribosomal protein C terminus
BF35_RS15205	PF02810	SEC-C motif
BF35_RS15205	PF07517	SecA DEAD-like domain
BF35_RS15205	PF01043	SecA preprotein cross-linking domain
BF35_RS15205	PF07516	SecA Wing and Scaffold domain
BF35_RS15210	PF00472	RF-1 domain
BF35_RS15210	PF03462	PCRF domain
BF35_RS15220	PF13442	Cytochrome C oxidase, cbb3-type, subunit III 
BF35_RS15225	PF00005	ABC transporter
BF35_RS15230	PF18075	FtsX extracellular domain
BF35_RS15230	PF02687	FtsX-like permease family
BF35_RS15235	PF03572	Peptidase family S41
BF35_RS15235	PF17820	PDZ domain
BF35_RS15235	PF01471	Putative peptidoglycan binding domain
BF35_RS15240	PF17820	PDZ domain
BF35_RS15245	PF00664	ABC transporter transmembrane region
BF35_RS15245	PF00005	ABC transporter
BF35_RS15250	PF01906	Putative heavy-metal-binding
BF35_RS15255	PF12848	ABC transporter
BF35_RS15255	PF00005	ABC transporter
BF35_RS15260	PF03358	NADPH-dependent FMN reductase
BF35_RS15265	PF09278	MerR, DNA binding
BF35_RS15265	PF00376	MerR family regulatory protein
BF35_RS15270	PF03466	LysR substrate binding domain
BF35_RS15270	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS15275	PF03601	Conserved hypothetical protein 698
BF35_RS15300	PF13411	MerR HTH family regulatory protein
BF35_RS15300	PF07739	TipAS antibiotic-recognition domain
BF35_RS15315	PF02151	UvrB/uvrC motif
BF35_RS15315	PF17757	UvrB interaction domain
BF35_RS15315	PF12344	Ultra-violet resistance protein B
BF35_RS15315	PF00271	Helicase conserved C-terminal domain
BF35_RS15315	PF04851	Type III restriction enzyme, res subunit
BF35_RS15320	PF17760	UvrA interaction domain
BF35_RS15320	PF00005	ABC transporter
BF35_RS15320	PF17755	UvrA DNA-binding domain
BF35_RS15330	PF04020	Mycobacterial 4 TMS phage holin, superfamily IV
BF35_RS15335	PF07475	HPr Serine kinase C-terminal domain
BF35_RS15335	PF02603	HPr Serine kinase N terminus
BF35_RS15340	PF01790	Prolipoprotein diacylglyceryl transferase
BF35_RS15345	PF13419	Haloacid dehalogenase-like hydrolase
BF35_RS15350	PF14602	Hexapeptide repeat of succinyl-transferase
BF35_RS15360	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS15370	PF00293	NUDIX domain
BF35_RS15375	PF03668	P-loop ATPase protein family
BF35_RS15380	PF01933	Uncharacterised protein family UPF0052
BF35_RS15385	PF02650	WhiA C-terminal HTH domain
BF35_RS15385	PF14527	WhiA LAGLIDADG-like domain
BF35_RS15385	PF10298	WhiA N-terminal LAGLIDADG-like domain
BF35_RS15390	PF00381	PTS HPr component phosphorylation site
BF35_RS15395	PF00574	Clp protease
BF35_RS15400	PF04239	Protein of unknown function (DUF421)
BF35_RS15410	PF03862	SpoVAC/SpoVAEB sporulation membrane protein
BF35_RS15415	PF07451	Stage V sporulation protein AD (SpoVAD)
BF35_RS15420	PF03862	SpoVAC/SpoVAEB sporulation membrane protein
BF35_RS15440	PF04963	Sigma-54 factor, core binding domain
BF35_RS15440	PF04552	Sigma-54, DNA binding domain
BF35_RS15440	PF00309	Sigma-54 factor, Activator interacting domain (AID) 
BF35_RS15450	PF04198	Putative sugar-binding domain
BF35_RS15455	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BF35_RS15455	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
BF35_RS15460	PF00162	Phosphoglycerate kinase
BF35_RS15465	PF00121	Triosephosphate isomerase
BF35_RS15470	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
BF35_RS15470	PF01676	Metalloenzyme superfamily
BF35_RS15475	PF03952	Enolase, N-terminal domain
BF35_RS15475	PF00113	Enolase, C-terminal TIM barrel domain
BF35_RS15480	PF01156	Inosine-uridine preferring nucleoside hydrolase
BF35_RS15485	PF03788	LrgA family
BF35_RS15490	PF04172	LrgB-like family 
BF35_RS15495	PF03840	Preprotein translocase SecG subunit
BF35_RS15500	PF12146	Serine aminopeptidase, S33
BF35_RS15505	PF00773	RNB domain
BF35_RS15505	PF00575	S1 RNA binding domain
BF35_RS15505	PF08206	Ribonuclease B OB domain
BF35_RS15505	PF17876	Cold shock domain
BF35_RS15510	PF01668	SmpB protein
BF35_RS15520	PF00072	Response regulator receiver domain
BF35_RS15520	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS15530	PF01032	FecCD transport family
BF35_RS15535	PF01032	FecCD transport family
BF35_RS15540	PF00005	ABC transporter
BF35_RS15545	PF06146	Phosphate-starvation-inducible E
BF35_RS15550	PF13302	Acetyltransferase (GNAT) domain
BF35_RS15555	PF12848	ABC transporter
BF35_RS15555	PF00005	ABC transporter
BF35_RS15560	PF07690	Major Facilitator Superfamily
BF35_RS15575	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
BF35_RS15580	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
BF35_RS15590	PF00672	HAMP domain
BF35_RS15590	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS15590	PF17202	Single cache domain 3
BF35_RS15600	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
BF35_RS15600	PF01565	FAD binding domain 
BF35_RS15605	PF01479	S4 domain
BF35_RS15605	PF00579	tRNA synthetases class I (W and Y)
BF35_RS15610	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS15615	PF07849	Protein of unknown function (DUF1641)
BF35_RS15625	PF01638	HxlR-like helix-turn-helix
BF35_RS15630	PF07690	Major Facilitator Superfamily
BF35_RS15635	PF00248	Aldo/keto reductase family
BF35_RS15650	PF13460	NAD(P)H-binding 
BF35_RS15655	PF01235	Sodium:alanine symporter family
BF35_RS15660	PF01235	Sodium:alanine symporter family
BF35_RS15665	PF01773	Na+ dependent nucleoside transporter N-terminus
BF35_RS15665	PF07662	Na+ dependent nucleoside transporter C-terminus
BF35_RS15670	PF01773	Na+ dependent nucleoside transporter N-terminus
BF35_RS15670	PF07662	Na+ dependent nucleoside transporter C-terminus
BF35_RS15680	PF00210	Ferritin-like domain
BF35_RS15690	PF03641	Possible lysine decarboxylase
BF35_RS15710	PF00210	Ferritin-like domain
BF35_RS15715	PF01235	Sodium:alanine symporter family
BF35_RS15725	PF02080	TrkA-C domain
BF35_RS15730	PF00999	Sodium/hydrogen exchanger family
BF35_RS15735	PF09335	SNARE associated Golgi protein
BF35_RS15745	PF01047	MarR family
BF35_RS15750	PF17954	Quercetinase C-terminal cupin domain
BF35_RS15750	PF02678	Pirin
BF35_RS15755	PF02868	Thermolysin metallopeptidase, alpha-helical domain
BF35_RS15755	PF01447	Thermolysin metallopeptidase, catalytic domain
BF35_RS15755	PF03413	Peptidase propeptide and YPEB domain
BF35_RS15755	PF07504	Fungalysin/Thermolysin Propeptide Motif
BF35_RS15760	PF01883	Iron-sulfur cluster assembly protein
BF35_RS15765	PF00672	HAMP domain
BF35_RS15765	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS15765	PF02743	Cache domain
BF35_RS15770	PF00672	HAMP domain
BF35_RS15770	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS15770	PF02743	Cache domain
BF35_RS15780	PF08264	Anticodon-binding domain of tRNA
BF35_RS15780	PF09334	tRNA synthetases class I (M)
BF35_RS15790	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS15790	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS15790	PF16736	Single Cache-like 
BF35_RS15790	PF00989	PAS fold
BF35_RS15795	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS15795	PF00072	Response regulator receiver domain
BF35_RS15800	PF03734	L,D-transpeptidase catalytic domain
BF35_RS15800	PF17969	L,D-transpeptidase C-terminal domain
BF35_RS15810	PF09335	SNARE associated Golgi protein
BF35_RS15845	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS15845	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF35_RS15855	PF02096	60Kd inner membrane protein
BF35_RS15870	PF13520	Amino acid permease
BF35_RS15875	PF07690	Major Facilitator Superfamily
BF35_RS15895	PF00672	HAMP domain
BF35_RS15895	PF02743	Cache domain
BF35_RS15895	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS15900	PF01910	Thiamine-binding protein
BF35_RS15905	PF10835	Protein of unknown function (DUF2573)
BF35_RS15910	PF01619	Proline dehydrogenase
BF35_RS15915	PF07943	Penicillin-binding protein 5, C-terminal domain
BF35_RS15915	PF00768	D-alanyl-D-alanine carboxypeptidase
BF35_RS15920	PF14115	YuzL-like protein
BF35_RS15925	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
BF35_RS15925	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
BF35_RS15925	PF00378	Enoyl-CoA hydratase/isomerase
BF35_RS15930	PF02803	Thiolase, C-terminal domain
BF35_RS15930	PF00108	Thiolase, N-terminal domain
BF35_RS15940	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
BF35_RS15940	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
BF35_RS15940	PF02770	Acyl-CoA dehydrogenase, middle domain
BF35_RS15945	PF00753	Metallo-beta-lactamase superfamily
BF35_RS15950	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS15950	PF13305	Tetracyclin repressor-like, C-terminal domain
BF35_RS15970	PF00056	lactate/malate dehydrogenase, NAD binding domain
BF35_RS15970	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
BF35_RS16015	PF03960	ArsC family
BF35_RS16020	PF01597	Glycine cleavage H-protein
BF35_RS16025	PF01751	Toprim domain
BF35_RS16030	PF00085	Thioredoxin
BF35_RS16040	PF09383	NIL domain
BF35_RS16040	PF00005	ABC transporter
BF35_RS16045	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS16050	PF03180	NLPA lipoprotein
BF35_RS16055	PF03180	NLPA lipoprotein
BF35_RS16060	PF00005	ABC transporter
BF35_RS16065	PF01458	Uncharacterized protein family (UPF0051)
BF35_RS16070	PF00266	Aminotransferase class-V
BF35_RS16075	PF01592	NifU-like N terminal domain
BF35_RS16080	PF01458	Uncharacterized protein family (UPF0051)
BF35_RS16085	PF04892	VanZ like family 
BF35_RS16090	PF03551	Transcriptional regulator PadR-like family
BF35_RS16095	PF02872	5'-nucleotidase, C-terminal domain
BF35_RS16100	PF08827	Domain of unknown function (DUF1805)
BF35_RS16110	PF01551	Peptidase family M23
BF35_RS16115	PF16881	N-terminal domain of lipoyl synthase of Radical_SAM family
BF35_RS16115	PF04055	Radical SAM superfamily
BF35_RS16135	PF10086	YhfC intramembrane metalloprotease
BF35_RS16140	PF07739	TipAS antibiotic-recognition domain
BF35_RS16140	PF13411	MerR HTH family regulatory protein
BF35_RS16145	PF09580	Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
BF35_RS16150	PF06265	Protein of unknown function (DUF1027)
BF35_RS16165	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
BF35_RS16170	PF01934	Protein of unknown function DUF86
BF35_RS16180	PF13344	Haloacid dehalogenase-like hydrolase
BF35_RS16190	PF02525	Flavodoxin-like fold
BF35_RS16205	PF04608	Phosphatidylglycerophosphatase A
BF35_RS16220	PF01106	NifU-like domain
BF35_RS16225	PF07315	Protein of unknown function (DUF1462)
BF35_RS16230	PF01909	Nucleotidyltransferase domain
BF35_RS16230	PF13427	Domain of unknown function (DUF4111)
BF35_RS16240	PF08274	PhnA Zinc-Ribbon 
BF35_RS16240	PF03831	PhnA domain
BF35_RS16245	PF03649	Uncharacterised protein family (UPF0014)
BF35_RS16250	PF09383	NIL domain
BF35_RS16250	PF00005	ABC transporter
BF35_RS16260	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS16265	PF07293	Protein of unknown function (DUF1450)
BF35_RS16270	PF01678	Diaminopimelate epimerase
BF35_RS16275	PF01521	Iron-sulphur cluster biosynthesis
BF35_RS16290	PF04463	Protein of unknown function (DUF523)
BF35_RS16305	PF06445	GyrI-like small molecule binding domain
BF35_RS16310	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS16315	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS16320	PF13344	Haloacid dehalogenase-like hydrolase
BF35_RS16320	PF00293	NUDIX domain
BF35_RS16330	PF06725	3D domain
BF35_RS16335	PF00883	Cytosol aminopeptidase family, catalytic domain
BF35_RS16335	PF02789	Cytosol aminopeptidase family, N-terminal domain
BF35_RS16340	PF10372	Bacterial membrane-spanning protein N-terminus
BF35_RS16340	PF02457	DisA bacterial checkpoint controller nucleotide-binding
BF35_RS16345	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
BF35_RS16345	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
BF35_RS16345	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
BF35_RS16345	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
BF35_RS16350	PF00483	Nucleotidyl transferase
BF35_RS16355	PF02632	BioY family
BF35_RS16365	PF03061	Thioesterase superfamily
BF35_RS16370	PF03129	Anticodon binding domain
BF35_RS16370	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BF35_RS16385	PF03600	Citrate transporter
BF35_RS16390	PF00929	Exonuclease
BF35_RS16395	PF08810	Kinase associated protein B
BF35_RS16410	PF00155	Aminotransferase class I and II
BF35_RS16420	PF00561	alpha/beta hydrolase fold
BF35_RS16420	PF08386	TAP-like protein
BF35_RS16425	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
BF35_RS16425	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BF35_RS16430	PF01037	Lrp/AsnC ligand binding domain
BF35_RS16435	PF00155	Aminotransferase class I and II
BF35_RS16440	PF00575	S1 RNA binding domain
BF35_RS16445	PF04070	Domain of unknown function (DUF378)
BF35_RS16455	PF00342	Phosphoglucose isomerase
BF35_RS16460	PF08868	YugN-like family
BF35_RS16465	PF07885	Ion channel
BF35_RS16465	PF02254	TrkA-N domain
BF35_RS16470	PF02308	MgtC family
BF35_RS16505	PF05697	Bacterial trigger factor protein (TF)
BF35_RS16505	PF05698	Bacterial trigger factor protein (TF) C-terminus
BF35_RS16600	PF08281	Sigma-70, region 4
BF35_RS16600	PF04542	Sigma-70 region 2 
BF35_RS16610	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
BF35_RS16610	PF00056	lactate/malate dehydrogenase, NAD binding domain
BF35_RS16615	PF13860	FlgD Ig-like domain
BF35_RS16615	PF02225	PA domain
BF35_RS16615	PF05922	Peptidase inhibitor I9
BF35_RS16615	PF00082	Subtilase family
BF35_RS16625	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
BF35_RS16625	PF02806	Alpha amylase, C-terminal all-beta domain
BF35_RS16625	PF00128	Alpha amylase, catalytic domain
BF35_RS16630	PF00483	Nucleotidyl transferase
BF35_RS16635	PF00483	Nucleotidyl transferase
BF35_RS16640	PF00534	Glycosyl transferases group 1
BF35_RS16640	PF08323	Starch synthase catalytic domain
BF35_RS16645	PF00343	Carbohydrate phosphorylase
BF35_RS16660	PF09278	MerR, DNA binding
BF35_RS16660	PF00376	MerR family regulatory protein
BF35_RS16670	PF00313	'Cold-shock' DNA-binding domain
BF35_RS16675	PF01258	Prokaryotic dksA/traR C4-type zinc finger
BF35_RS16680	PF01040	UbiA prenyltransferase family
BF35_RS16685	PF00425	chorismate binding enzyme
BF35_RS16690	PF16582	Middle domain of thiamine pyrophosphate
BF35_RS16690	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BF35_RS16690	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BF35_RS16695	PF12697	Alpha/beta hydrolase family
BF35_RS16700	PF00378	Enoyl-CoA hydratase/isomerase
BF35_RS16705	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS16705	PF00501	AMP-binding enzyme
BF35_RS16710	PF13378	Enolase C-terminal domain-like
BF35_RS16710	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
BF35_RS16715	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS16715	PF00072	Response regulator receiver domain
BF35_RS16720	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS16720	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS16725	PF02557	D-alanyl-D-alanine carboxypeptidase
BF35_RS16730	PF01979	Amidohydrolase family
BF35_RS16735	PF03841	L-seryl-tRNA selenium transferase
BF35_RS16740	PF07071	KDGP aldolase
BF35_RS16750	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS16750	PF07702	UTRA domain
BF35_RS16755	PF02447	GntP family permease
BF35_RS16765	PF02687	FtsX-like permease family
BF35_RS16770	PF00005	ABC transporter
BF35_RS16775	PF02687	FtsX-like permease family
BF35_RS16780	PF02687	FtsX-like permease family
BF35_RS16785	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS16790	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS16790	PF00072	Response regulator receiver domain
BF35_RS16795	PF01022	Bacterial regulatory protein, arsR family
BF35_RS16800	PF07853	Protein of unknown function (DUF1648)
BF35_RS16800	PF13630	SdpI/YhfL protein family
BF35_RS16805	PF12833	Helix-turn-helix domain
BF35_RS16805	PF06445	GyrI-like small molecule binding domain
BF35_RS16810	PF00005	ABC transporter
BF35_RS16815	PF02687	FtsX-like permease family
BF35_RS16825	PF12833	Helix-turn-helix domain
BF35_RS16825	PF02311	AraC-like ligand binding domain
BF35_RS16830	PF00398	Ribosomal RNA adenine dimethylase
BF35_RS16835	PF09335	SNARE associated Golgi protein
BF35_RS16850	PF00248	Aldo/keto reductase family
BF35_RS16875	PF00781	Diacylglycerol kinase catalytic domain
BF35_RS16880	PF00156	Phosphoribosyl transferase domain
BF35_RS16905	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS16905	PF00072	Response regulator receiver domain
BF35_RS16910	PF00672	HAMP domain
BF35_RS16910	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS16910	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS16915	PF09515	Thiamine transporter protein (Thia_YuaJ)
BF35_RS16925	PF07664	Ferrous iron transport protein B C terminus
BF35_RS16925	PF02421	Ferrous iron transport protein B
BF35_RS16925	PF17910	FeoB cytosolic helical domain
BF35_RS16925	PF07670	Nucleoside recognition
BF35_RS16940	PF04740	LXG domain of WXG superfamily
BF35_RS16940	PF14436	Bacterial EndoU nuclease
BF35_RS16955	PF04012	PspA/IM30 family
BF35_RS16980	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF35_RS16980	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS17000	PF10676	Spore germination protein gerPA/gerPF
BF35_RS17005	PF02322	Cytochrome bd terminal oxidase subunit II
BF35_RS17010	PF01654	Cytochrome bd terminal oxidase subunit I
BF35_RS17015	PF00484	Carbonic anhydrase
BF35_RS17020	PF01809	Putative membrane protein insertion efficiency factor
BF35_RS17025	PF02664	S-Ribosylhomocysteinase (LuxS)
BF35_RS17045	PF00293	NUDIX domain
BF35_RS17055	PF13419	Haloacid dehalogenase-like hydrolase
BF35_RS17070	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS17075	PF00005	ABC transporter
BF35_RS17095	PF00884	Sulfatase
BF35_RS17100	PF00561	alpha/beta hydrolase fold
BF35_RS17100	PF08386	TAP-like protein
BF35_RS17105	PF00989	PAS fold
BF35_RS17105	PF08447	PAS fold
BF35_RS17105	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS17105	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS17110	PF13426	PAS domain
BF35_RS17110	PF13188	PAS domain
BF35_RS17110	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS17110	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS17110	PF00989	PAS fold
BF35_RS17175	PF01293	Phosphoenolpyruvate carboxykinase
BF35_RS17180	PF00438	S-adenosylmethionine synthetase, N-terminal domain
BF35_RS17180	PF02772	S-adenosylmethionine synthetase, central domain
BF35_RS17180	PF02773	S-adenosylmethionine synthetase, C-terminal domain
BF35_RS17185	PF13302	Acetyltransferase (GNAT) domain
BF35_RS17200	PF00994	Probable molybdopterin binding domain
BF35_RS17205	PF12804	MobA-like NTP transferase domain
BF35_RS17210	PF00534	Glycosyl transferases group 1
BF35_RS17210	PF13439	Glycosyltransferase Family 4
BF35_RS17215	PF01569	PAP2 superfamily
BF35_RS17220	PF00132	Bacterial transferase hexapeptide (six repeats)
BF35_RS17225	PF12146	Serine aminopeptidase, S33
BF35_RS17230	PF10776	Protein of unknown function (DUF2600)
BF35_RS17250	PF01177	Asp/Glu/Hydantoin racemase
BF35_RS17260	PF00005	ABC transporter
BF35_RS17265	PF06962	Putative rRNA methylase
BF35_RS17270	PF04055	Radical SAM superfamily
BF35_RS17270	PF16199	Radical_SAM C-terminal domain
BF35_RS17275	PF10732	Protein of unknown function (DUF2524)
BF35_RS17285	PF07786	Protein of unknown function (DUF1624)
BF35_RS17285	PF04235	Protein of unknown function (DUF418)
BF35_RS17290	PF00005	ABC transporter
BF35_RS17300	PF00589	Phage integrase family
BF35_RS17305	PF02080	TrkA-C domain
BF35_RS17310	PF00999	Sodium/hydrogen exchanger family
BF35_RS17315	PF07690	Major Facilitator Superfamily
BF35_RS17320	PF08264	Anticodon-binding domain of tRNA
BF35_RS17320	PF13603	Leucyl-tRNA synthetase, Domain 2
BF35_RS17320	PF09334	tRNA synthetases class I (M)
BF35_RS17320	PF00133	tRNA synthetases class I (I, L, M and V)
BF35_RS17350	PF03845	Spore germination protein
BF35_RS17355	PF03323	Bacillus/Clostridium GerA spore germination protein
BF35_RS17360	PF00561	alpha/beta hydrolase fold
BF35_RS17370	PF00581	Rhodanese-like domain
BF35_RS17390	PF06463	Molybdenum Cofactor Synthesis C
BF35_RS17390	PF04055	Radical SAM superfamily
BF35_RS17395	PF00899	ThiF family
BF35_RS17400	PF01967	MoaC family
BF35_RS17405	PF03453	MoeA N-terminal region (domain I and II)
BF35_RS17405	PF03454	MoeA C-terminal region (domain IV)
BF35_RS17405	PF00994	Probable molybdopterin binding domain
BF35_RS17410	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
BF35_RS17415	PF02391	MoaE protein
BF35_RS17430	PF06800	Sugar transport protein
BF35_RS17440	PF02559	CarD-like/TRCF domain
BF35_RS17450	PF10957	Sporulation protein Cse60 
BF35_RS17460	PF08327	Activator of Hsp90 ATPase homolog 1-like protein
BF35_RS17465	PF01022	Bacterial regulatory protein, arsR family
BF35_RS17470	PF07690	Major Facilitator Superfamily
BF35_RS17480	PF14667	Polysaccharide biosynthesis C-terminal domain
BF35_RS17480	PF01943	Polysaccharide biosynthesis protein
BF35_RS17485	PF00849	RNA pseudouridylate synthase
BF35_RS17485	PF01479	S4 domain
BF35_RS17490	PF08220	DeoR-like helix-turn-helix domain
BF35_RS17495	PF01546	Peptidase family M20/M25/M40
BF35_RS17500	PF02834	LigT like Phosphoesterase
BF35_RS17510	PF00128	Alpha amylase, catalytic domain
BF35_RS17510	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
BF35_RS17510	PF17999	Pullulanase N1-terminal domain
BF35_RS17515	PF01636	Phosphotransferase enzyme family
BF35_RS17520	PF14165	YtzH-like protein
BF35_RS17525	PF02390	Putative methyltransferase 
BF35_RS17530	PF00753	Metallo-beta-lactamase superfamily
BF35_RS17540	PF05343	M42 glutamyl aminopeptidase
BF35_RS17545	PF01931	Protein of unknown function DUF84
BF35_RS17550	PF00085	Thioredoxin
BF35_RS17555	PF07285	Protein of unknown function (DUF1444)
BF35_RS17560	PF14794	Domain of unknown function (DUF4479)
BF35_RS17560	PF01588	Putative tRNA binding domain
BF35_RS17570	PF01520	N-acetylmuramoyl-L-alanine amidase
BF35_RS17570	PF08239	Bacterial SH3 domain
BF35_RS17575	PF17854	FtsK alpha domain
BF35_RS17575	PF09397	Ftsk gamma domain
BF35_RS17575	PF01580	FtsK/SpoIIIE family
BF35_RS17585	PF08245	Mur ligase middle domain
BF35_RS17585	PF01225	Mur ligase family, catalytic domain
BF35_RS17585	PF02875	Mur ligase family, glutamate ligase domain
BF35_RS17595	PF03551	Transcriptional regulator PadR-like family
BF35_RS17600	PF13411	MerR HTH family regulatory protein
BF35_RS17605	PF00892	EamA-like transporter family
BF35_RS17610	PF13302	Acetyltransferase (GNAT) domain
BF35_RS17635	PF02073	Thermophilic metalloprotease (M29)
BF35_RS17645	PF11009	Protein of unknown function (DUF2847)
BF35_RS17650	PF07537	CamS sex pheromone cAM373 precursor
BF35_RS17660	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS17685	PF01741	Large-conductance mechanosensitive channel, MscL
BF35_RS17690	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
BF35_RS17695	PF12796	Ankyrin repeats (3 copies)
BF35_RS17700	PF00672	HAMP domain
BF35_RS17700	PF13426	PAS domain
BF35_RS17700	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS17700	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS17705	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS17705	PF00072	Response regulator receiver domain
BF35_RS17720	PF00850	Histone deacetylase domain
BF35_RS17725	PF00571	CBS domain
BF35_RS17730	PF00583	Acetyltransferase (GNAT) family
BF35_RS17735	PF00501	AMP-binding enzyme
BF35_RS17735	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS17745	PF08281	Sigma-70, region 4
BF35_RS17745	PF04542	Sigma-70 region 2 
BF35_RS17755	PF01479	S4 domain
BF35_RS17755	PF00579	tRNA synthetases class I (W and Y)
BF35_RS17770	PF01479	S4 domain
BF35_RS17770	PF00163	Ribosomal protein S4/S9 N-terminal domain
BF35_RS17775	PF01053	Cys/Met metabolism PLP-dependent enzyme
BF35_RS17780	PF13185	GAF domain
BF35_RS17785	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS17790	PF00892	EamA-like transporter family
BF35_RS17795	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS17795	PF03466	LysR substrate binding domain
BF35_RS17800	PF06160	Septation ring formation regulator, EzrA 
BF35_RS17805	PF00266	Aminotransferase class-V
BF35_RS17810	PF02926	THUMP domain
BF35_RS17810	PF02568	Thiamine biosynthesis protein (ThiI)
BF35_RS17815	PF00269	Small, acid-soluble spore proteins, alpha/beta type
BF35_RS17820	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS17820	PF00501	AMP-binding enzyme
BF35_RS17830	PF07969	Amidohydrolase family
BF35_RS17835	PF01513	ATP-NAD kinase
BF35_RS17845	PF09579	Sporulation protein YtfJ (Spore_YtfJ)
BF35_RS17850	PF08534	Redoxin
BF35_RS17855	PF02384	N-6 DNA Methylase
BF35_RS17860	PF00871	Acetokinase family
BF35_RS17875	PF12787	EcsC protein family
BF35_RS17880	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS17880	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF35_RS17895	PF00764	Arginosuccinate synthase
BF35_RS17900	PF00206	Lyase
BF35_RS17900	PF14698	Argininosuccinate lyase C-terminal
BF35_RS17915	PF00582	Universal stress protein family
BF35_RS17925	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
BF35_RS17925	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
BF35_RS17935	PF01381	Helix-turn-helix
BF35_RS17945	PF07883	Cupin domain
BF35_RS17950	PF12746	GNAT acetyltransferase
BF35_RS17960	PF04542	Sigma-70 region 2 
BF35_RS17960	PF08281	Sigma-70, region 4
BF35_RS17990	PF00557	Metallopeptidase family M24
BF35_RS17990	PF01321	Creatinase/Prolidase N-terminal domain
BF35_RS18005	PF03061	Thioesterase superfamily
BF35_RS18005	PF07085	DRTGG domain
BF35_RS18005	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS18005	PF00571	CBS domain
BF35_RS18020	PF14007	YtpI-like protein
BF35_RS18025	PF02272	DHHA1 domain
BF35_RS18025	PF01368	DHH family
BF35_RS18035	PF14034	Sporulation protein YtrH
BF35_RS18040	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
BF35_RS18040	PF14579	Helix-hairpin-helix motif
BF35_RS18040	PF07733	Bacterial DNA polymerase III alpha NTPase domain
BF35_RS18040	PF01336	OB-fold nucleic acid binding domain
BF35_RS18040	PF02811	PHP domain
BF35_RS18045	PF00390	Malic enzyme, N-terminal domain
BF35_RS18045	PF03949	Malic enzyme, NAD binding domain
BF35_RS18050	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS18055	PF01039	Carboxyl transferase domain
BF35_RS18055	PF17848	Acetyl-coA carboxylase zinc finger domain
BF35_RS18060	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
BF35_RS18065	PF00365	Phosphofructokinase
BF35_RS18070	PF02887	Pyruvate kinase, alpha/beta domain
BF35_RS18070	PF00224	Pyruvate kinase, barrel domain
BF35_RS18070	PF00391	PEP-utilising enzyme, mobile domain
BF35_RS18075	PF04186	FxsA cytoplasmic membrane protein 
BF35_RS18080	PF01594	AI-2E family transporter
BF35_RS18085	PF04284	Protein of unknown function (DUF441)
BF35_RS18095	PF00285	Citrate synthase, C-terminal domain
BF35_RS18100	PF00180	Isocitrate/isopropylmalate dehydrogenase
BF35_RS18105	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
BF35_RS18105	PF00056	lactate/malate dehydrogenase, NAD binding domain
BF35_RS18120	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS18120	PF00072	Response regulator receiver domain
BF35_RS18125	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS18125	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS18125	PF00989	PAS fold
BF35_RS18125	PF16736	Single Cache-like 
BF35_RS18130	PF00476	DNA polymerase family A
BF35_RS18130	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
BF35_RS18130	PF01367	5'-3' exonuclease, C-terminal SAM fold
BF35_RS18135	PF06827	Zinc finger found in FPG and IleRS
BF35_RS18135	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
BF35_RS18135	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
BF35_RS18140	PF02659	Putative manganese efflux pump
BF35_RS18145	PF01121	Dephospho-CoA kinase
BF35_RS18150	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
BF35_RS18150	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BF35_RS18155	PF02675	S-adenosylmethionine decarboxylase 
BF35_RS18160	PF03477	ATP cone domain
BF35_RS18165	PF07261	Replication initiation and membrane attachment
BF35_RS18170	PF07319	Primosomal protein DnaI N-terminus
BF35_RS18170	PF01695	IstB-like ATP binding protein
BF35_RS18175	PF08812	YtxC-like family
BF35_RS18180	PF03129	Anticodon binding domain
BF35_RS18180	PF02824	TGS domain
BF35_RS18180	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BF35_RS18180	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BF35_RS18185	PF05198	Translation initiation factor IF-3, N-terminal domain
BF35_RS18185	PF00707	Translation initiation factor IF-3, C-terminal domain
BF35_RS18190	PF01632	Ribosomal protein L35
BF35_RS18195	PF00453	Ribosomal protein L20
BF35_RS18205	PF05343	M42 glutamyl aminopeptidase
BF35_RS18210	PF16859	Tetracyclin repressor-like, C-terminal domain
BF35_RS18210	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS18220	PF07690	Major Facilitator Superfamily
BF35_RS18230	PF01966	HD domain
BF35_RS18235	PF14098	Small, acid-soluble spore protein I
BF35_RS18240	PF08032	RNA 2'-O ribose methyltransferase substrate binding
BF35_RS18240	PF00588	SpoU rRNA Methylase family
BF35_RS18245	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
BF35_RS18245	PF01409	tRNA synthetases class II core domain (F)
BF35_RS18250	PF03484	tRNA synthetase B5 domain
BF35_RS18250	PF03147	Ferredoxin-fold anticodon binding domain
BF35_RS18250	PF17759	Phenylalanyl tRNA synthetase beta chain CLM domain
BF35_RS18250	PF01588	Putative tRNA binding domain
BF35_RS18250	PF03483	B3/4 domain
BF35_RS18255	PF01336	OB-fold nucleic acid binding domain
BF35_RS18255	PF00152	tRNA synthetases class II (D, K and N) 
BF35_RS18275	PF11858	Domain of unknown function (DUF3378)
BF35_RS18275	PF01351	Ribonuclease HII
BF35_RS18280	PF05164	Cell division protein ZapA
BF35_RS18285	PF02674	Colicin V production protein
BF35_RS18290	PF02811	PHP domain
BF35_RS18290	PF14716	Helix-hairpin-helix domain
BF35_RS18290	PF14791	DNA polymerase beta thumb 
BF35_RS18295	PF01713	Smr domain
BF35_RS18295	PF00488	MutS domain V
BF35_RS18305	PF01479	S4 domain
BF35_RS18305	PF00849	RNA pseudouridylate synthase
BF35_RS18310	PF05525	Branched-chain amino acid transport protein
BF35_RS18315	PF05031	Iron Transport-associated domain 
BF35_RS18325	PF05031	Iron Transport-associated domain 
BF35_RS18330	PF01497	Periplasmic binding protein
BF35_RS18335	PF01032	FecCD transport family
BF35_RS18340	PF00005	ABC transporter
BF35_RS18345	PF04203	Sortase domain
BF35_RS18350	PF03992	Antibiotic biosynthesis monooxygenase
BF35_RS18355	PF17785	PUA-like domain
BF35_RS18355	PF10672	S-adenosylmethionine-dependent methyltransferase
BF35_RS18360	PF09962	Uncharacterized conserved protein (DUF2196)
BF35_RS18370	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS18370	PF00072	Response regulator receiver domain
BF35_RS18375	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS18375	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS18380	PF00005	ABC transporter
BF35_RS18410	PF05163	DinB family
BF35_RS18420	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS18420	PF00501	AMP-binding enzyme
BF35_RS18425	PF08359	YsiA-like protein, C-terminal region
BF35_RS18425	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS18430	PF00378	Enoyl-CoA hydratase/isomerase
BF35_RS18435	PF01012	Electron transfer flavoprotein domain
BF35_RS18440	PF00766	Electron transfer flavoprotein FAD-binding domain
BF35_RS18440	PF01012	Electron transfer flavoprotein domain
BF35_RS18445	PF00085	Thioredoxin
BF35_RS18450	PF02151	UvrB/uvrC motif
BF35_RS18450	PF08459	UvrC Helix-hairpin-helix N-terminal
BF35_RS18450	PF01541	GIY-YIG catalytic domain
BF35_RS18455	PF10702	Protein of unknown function (DUF2507)
BF35_RS18460	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
BF35_RS18465	PF02910	Fumarate reductase flavoprotein C-term
BF35_RS18465	PF00890	FAD binding domain
BF35_RS18470	PF13183	4Fe-4S dicluster domain
BF35_RS18470	PF13085	2Fe-2S iron-sulfur cluster binding domain
BF35_RS18475	PF03061	Thioesterase superfamily
BF35_RS18480	PF02557	D-alanyl-D-alanine carboxypeptidase
BF35_RS18485	PF01618	MotA/TolQ/ExbB proton channel family
BF35_RS18490	PF00691	OmpA family
BF35_RS18490	PF13677	Membrane MotB of proton-channel complex MotA/MotB 
BF35_RS18495	PF03767	HAD superfamily, subfamily IIIB (Acid phosphatase)
BF35_RS18500	PF00005	ABC transporter
BF35_RS18500	PF13732	Domain of unknown function (DUF4162)
BF35_RS18510	PF02082	Transcriptional regulator
BF35_RS18515	PF00230	Major intrinsic protein
BF35_RS18520	PF13536	Putative multidrug resistance efflux transporter
BF35_RS18525	PF01381	Helix-turn-helix
BF35_RS18525	PF07883	Cupin domain
BF35_RS18530	PF04024	PspC domain
BF35_RS18535	PF07969	Amidohydrolase family
BF35_RS18540	PF00860	Permease family
BF35_RS18545	PF00196	Bacterial regulatory proteins, luxR family
BF35_RS18560	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS18570	PF07690	Major Facilitator Superfamily
BF35_RS18575	PF01177	Asp/Glu/Hydantoin racemase
BF35_RS18580	PF10646	Sporulation and spore germination
BF35_RS18585	PF01138	3' exoribonuclease family, domain 1
BF35_RS18585	PF03725	3' exoribonuclease family, domain 2
BF35_RS18590	PF01725	Ham1 family
BF35_RS18595	PF12850	Calcineurin-like phosphoesterase superfamily domain
BF35_RS18640	PF05697	Bacterial trigger factor protein (TF)
BF35_RS18640	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
BF35_RS18640	PF05698	Bacterial trigger factor protein (TF) C-terminus
BF35_RS18645	PF06689	ClpX C4-type zinc finger
BF35_RS18645	PF10431	C-terminal, D2-small domain, of ClpB protein 
BF35_RS18645	PF07724	AAA domain (Cdc48 subfamily)
BF35_RS18650	PF05362	Lon protease (S16) C-terminal proteolytic domain
BF35_RS18650	PF00004	ATPase family associated with various cellular activities (AAA)
BF35_RS18655	PF00004	ATPase family associated with various cellular activities (AAA)
BF35_RS18655	PF05362	Lon protease (S16) C-terminal proteolytic domain
BF35_RS18655	PF02190	ATP-dependent protease La (LON) substrate-binding domain 
BF35_RS18660	PF01926	50S ribosome-binding GTPase
BF35_RS18665	PF02566	OsmC-like protein
BF35_RS18670	PF01047	MarR family
BF35_RS18675	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
BF35_RS18675	PF01488	Shikimate / quinate 5-dehydrogenase
BF35_RS18675	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
BF35_RS18680	PF01578	Cytochrome C assembly protein
BF35_RS18685	PF03900	Porphobilinogen deaminase, C-terminal domain
BF35_RS18685	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
BF35_RS18690	PF02602	Uroporphyrinogen-III synthase HemD
BF35_RS18695	PF00490	Delta-aminolevulinic acid dehydratase
BF35_RS18700	PF00202	Aminotransferase class-III
BF35_RS18705	PF01476	LysM domain
BF35_RS18715	PF08264	Anticodon-binding domain of tRNA
BF35_RS18715	PF00133	tRNA synthetases class I (I, L, M and V)
BF35_RS18715	PF10458	Valyl tRNA synthetase tRNA binding arm
BF35_RS18720	PF08245	Mur ligase middle domain
BF35_RS18720	PF02875	Mur ligase family, glutamate ligase domain
BF35_RS18730	PF02545	Maf-like protein
BF35_RS18735	PF04002	RadC-like JAB domain
BF35_RS18745	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BF35_RS18750	PF04002	RadC-like JAB domain
BF35_RS18760	PF04085	rod shape-determining protein MreC
BF35_RS18770	PF03775	Septum formation inhibitor MinC, C-terminal domain
BF35_RS18775	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
BF35_RS18780	PF01551	Peptidase family M23
BF35_RS18785	PF02163	Peptidase family M50
BF35_RS18790	PF10150	Ribonuclease E/G family
BF35_RS18790	PF00575	S1 RNA binding domain
BF35_RS18795	PF00829	Ribosomal prokaryotic L21 protein
BF35_RS18800	PF04327	Cysteine protease Prp
BF35_RS18805	PF01016	Ribosomal L27 protein
BF35_RS18810	PF14682	Sporulation initiation phospho-transferase B, C-terminal
BF35_RS18810	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
BF35_RS18815	PF01018	GTP1/OBG
BF35_RS18815	PF01926	50S ribosome-binding GTPase
BF35_RS18815	PF09269	Domain of unknown function (DUF1967)
BF35_RS18820	PF00072	Response regulator receiver domain
BF35_RS18820	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS18825	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS18830	PF00005	ABC transporter
BF35_RS18835	PF02687	FtsX-like permease family
BF35_RS18840	PF02687	FtsX-like permease family
BF35_RS18845	PF00800	Prephenate dehydratase
BF35_RS18845	PF01842	ACT domain
BF35_RS18850	PF03473	MOSC domain
BF35_RS18850	PF03475	3-alpha domain
BF35_RS18855	PF02829	3H domain
BF35_RS18855	PF08279	HTH domain
BF35_RS18860	PF00266	Aminotransferase class-V
BF35_RS18865	PF02910	Fumarate reductase flavoprotein C-term
BF35_RS18865	PF00890	FAD binding domain
BF35_RS18870	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
BF35_RS18870	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
BF35_RS18875	PF02445	Quinolinate synthetase A protein
BF35_RS18880	PF01476	LysM domain
BF35_RS18895	PF01022	Bacterial regulatory protein, arsR family
BF35_RS18900	PF00892	EamA-like transporter family
BF35_RS18910	PF01497	Periplasmic binding protein
BF35_RS18915	PF07499	RuvA, C-terminal domain
BF35_RS18915	PF01330	RuvA N terminal domain
BF35_RS18920	PF05491	RuvB C-terminal winged helix domain
BF35_RS18920	PF05496	Holliday junction DNA helicase RuvB P-loop domain
BF35_RS18920	PF17864	RuvB AAA lid domain
BF35_RS18925	PF11146	Protein of unknown function (DUF2905)
BF35_RS18930	PF02547	Queuosine biosynthesis protein
BF35_RS18935	PF01702	Queuine tRNA-ribosyltransferase
BF35_RS18940	PF02699	Preprotein translocase subunit
BF35_RS18950	PF04239	Protein of unknown function (DUF421)
BF35_RS18955	PF14667	Polysaccharide biosynthesis C-terminal domain
BF35_RS18955	PF01943	Polysaccharide biosynthesis protein
BF35_RS18960	PF13797	Post-transcriptional regulator
BF35_RS18965	PF07549	SecD/SecF GG Motif
BF35_RS18965	PF02355	Protein export membrane protein
BF35_RS18970	PF01545	Cation efflux family
BF35_RS18970	PF16916	Dimerisation domain of Zinc Transporter
BF35_RS18975	PF17768	RecJ OB domain
BF35_RS18975	PF10141	Single-strand DNA-specific exonuclease, C terminal domain
BF35_RS18975	PF01368	DHH family
BF35_RS18975	PF02272	DHHA1 domain
BF35_RS18980	PF00156	Phosphoribosyl transferase domain
BF35_RS18985	PF04607	Region found in RelA / SpoT proteins
BF35_RS18985	PF13291	ACT domain
BF35_RS18985	PF02824	TGS domain
BF35_RS18990	PF02580	D-Tyr-tRNA(Tyr) deacylase
BF35_RS19000	PF03129	Anticodon binding domain
BF35_RS19000	PF13393	Histidyl-tRNA synthetase
BF35_RS19005	PF02938	GAD domain
BF35_RS19005	PF01336	OB-fold nucleic acid binding domain
BF35_RS19005	PF00152	tRNA synthetases class II (D, K and N) 
BF35_RS19010	PF00899	ThiF family
BF35_RS19025	PF05496	Holliday junction DNA helicase RuvB P-loop domain
BF35_RS19025	PF12002	MgsA AAA+ ATPase C terminal
BF35_RS19025	PF16193	AAA C-terminal domain
BF35_RS19030	PF02082	Transcriptional regulator
BF35_RS19035	PF00266	Aminotransferase class-V
BF35_RS19050	PF14490	Helix-hairpin-helix containing domain
BF35_RS19050	PF18335	ATP-dependent RecD-like DNA helicase SH3 domain
BF35_RS19050	PF13538	UvrD-like helicase C-terminal domain
BF35_RS19070	PF01594	AI-2E family transporter
BF35_RS19080	PF02272	DHHA1 domain
BF35_RS19080	PF01411	tRNA synthetases class II (A)
BF35_RS19080	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BF35_RS19085	PF06135	IreB regulatory phosphoprotein
BF35_RS19090	PF03652	Holliday junction resolvase
BF35_RS19095	PF06949	Protein of unknown function (DUF1292)
BF35_RS19100	PF02618	YceG-like family
BF35_RS19105	PF01596	O-methyltransferase
BF35_RS19110	PF01136	Peptidase family U32
BF35_RS19115	PF01136	Peptidase family U32
BF35_RS19115	PF16325	Peptidase family U32 C-terminal domain
BF35_RS19120	PF00485	Phosphoribulokinase / Uridine kinase family
BF35_RS19125	PF03449	Transcription elongation factor, N-terminal
BF35_RS19125	PF01272	Transcription elongation factor, GreA/GreB, C-term
BF35_RS19130	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS19130	PF03717	Penicillin-binding Protein dimerisation domain
BF35_RS19145	PF08241	Methyltransferase domain
BF35_RS19150	PF01048	Phosphorylase superfamily
BF35_RS19155	PF00291	Pyridoxal-phosphate dependent enzyme
BF35_RS19160	PF01053	Cys/Met metabolism PLP-dependent enzyme
BF35_RS19165	PF00171	Aldehyde dehydrogenase family
BF35_RS19165	PF00465	Iron-containing alcohol dehydrogenase 
BF35_RS19175	PF01497	Periplasmic binding protein
BF35_RS19180	PF01032	FecCD transport family
BF35_RS19185	PF00005	ABC transporter
BF35_RS19215	PF07681	DoxX
BF35_RS19220	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS19230	PF00351	Biopterin-dependent aromatic amino acid hydroxylase
BF35_RS19235	PF05922	Peptidase inhibitor I9
BF35_RS19235	PF13860	FlgD Ig-like domain
BF35_RS19235	PF00082	Subtilase family
BF35_RS19235	PF02225	PA domain
BF35_RS19270	PF08386	TAP-like protein
BF35_RS19270	PF00561	alpha/beta hydrolase fold
BF35_RS19275	PF00583	Acetyltransferase (GNAT) family
BF35_RS19280	PF00245	Alkaline phosphatase
BF35_RS19290	PF04607	Region found in RelA / SpoT proteins
BF35_RS19295	PF00881	Nitroreductase family
BF35_RS19300	PF00471	Ribosomal protein L33
BF35_RS19305	PF16244	Domain of unknown function (DUF4901)
BF35_RS19315	PF04542	Sigma-70 region 2 
BF35_RS19315	PF04545	Sigma-70, region 4
BF35_RS19320	PF02666	Phosphatidylserine decarboxylase
BF35_RS19335	PF01926	50S ribosome-binding GTPase
BF35_RS19340	PF08501	Shikimate dehydrogenase substrate binding domain
BF35_RS19340	PF18317	Shikimate 5'-dehydrogenase C-terminal domain
BF35_RS19340	PF01488	Shikimate / quinate 5-dehydrogenase
BF35_RS19345	PF01985	CRS1 / YhbY (CRM) domain
BF35_RS19350	PF01467	Cytidylyltransferase-like
BF35_RS19355	PF01966	HD domain
BF35_RS19365	PF13649	Methyltransferase domain
BF35_RS19370	PF03807	NADP oxidoreductase coenzyme F420-dependent
BF35_RS19370	PF14748	Pyrroline-5-carboxylate reductase dimerisation
BF35_RS19375	PF10531	SLBB domain
BF35_RS19380	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
BF35_RS19385	PF00753	Metallo-beta-lactamase superfamily
BF35_RS19385	PF13567	Domain of unknown function (DUF4131)
BF35_RS19385	PF03772	Competence protein
BF35_RS19390	PF14141	YqzM-like protein
BF35_RS19395	PF06144	DNA polymerase III, delta subunit
BF35_RS19400	PF01649	Ribosomal protein S20
BF35_RS19405	PF03418	Germination protease
BF35_RS19415	PF06421	GTP-binding protein LepA C-terminus
BF35_RS19415	PF00679	Elongation factor G C-terminus
BF35_RS19415	PF03144	Elongation factor Tu domain 2
BF35_RS19415	PF00009	Elongation factor Tu GTP binding domain
BF35_RS19420	PF01638	HxlR-like helix-turn-helix
BF35_RS19425	PF04055	Radical SAM superfamily
BF35_RS19425	PF06969	HemN C-terminal domain
BF35_RS19430	PF01628	HrcA protein C terminal domain
BF35_RS19435	PF01025	GrpE
BF35_RS19440	PF00012	Hsp70 protein
BF35_RS19445	PF00684	DnaJ central domain
BF35_RS19445	PF00226	DnaJ domain
BF35_RS19445	PF01556	DnaJ C terminal domain
BF35_RS19455	PF04452	RNA methyltransferase
BF35_RS19460	PF01938	TRAM domain
BF35_RS19460	PF00919	Uncharacterized protein family UPF0004
BF35_RS19460	PF04055	Radical SAM superfamily
BF35_RS19465	PF01165	Ribosomal protein S21
BF35_RS19470	PF09424	Yqey-like protein
BF35_RS19475	PF07873	YabP family
BF35_RS19485	PF06898	Putative stage IV sporulation protein YqfD
BF35_RS19490	PF02562	PhoH-like protein
BF35_RS19495	PF07697	7TM-HD extracellular
BF35_RS19495	PF07698	7TM receptor with intracellular HD hydrolase
BF35_RS19495	PF01966	HD domain
BF35_RS19500	PF02130	Uncharacterized protein family UPF0054
BF35_RS19505	PF01219	Prokaryotic diacylglycerol kinase
BF35_RS19510	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
BF35_RS19515	PF07650	KH domain
BF35_RS19515	PF01926	50S ribosome-binding GTPase
BF35_RS19525	PF02565	Recombination protein O C terminal
BF35_RS19525	PF11967	Recombination protein O N terminal
BF35_RS19530	PF08279	HTH domain
BF35_RS19530	PF00571	CBS domain
BF35_RS19535	PF03618	Kinase/pyrophosphorylase
BF35_RS19550	PF01807	CHC2 zinc finger
BF35_RS19550	PF08275	DNA primase catalytic core, N-terminal domain
BF35_RS19550	PF10410	DnaB-helicase binding domain of primase
BF35_RS19555	PF04539	Sigma-70 region 3
BF35_RS19555	PF00140	Sigma-70 factor, region 1.2
BF35_RS19555	PF04542	Sigma-70 region 2 
BF35_RS19555	PF04545	Sigma-70, region 4
BF35_RS19555	PF03979	Sigma-70 factor, region 1.1
BF35_RS19560	PF13442	Cytochrome C oxidase, cbb3-type, subunit III 
BF35_RS19565	PF04816	tRNA (adenine(22)-N(1))-methyltransferase
BF35_RS19570	PF01784	NIF3 (NGG1p interacting factor 3)
BF35_RS19575	PF02401	LytB protein
BF35_RS19585	PF00270	DEAD/DEAH box helicase
BF35_RS19585	PF00271	Helicase conserved C-terminal domain
BF35_RS19590	PF01261	Xylose isomerase-like TIM barrel
BF35_RS19595	PF11116	Protein of unknown function (DUF2624)
BF35_RS19600	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS19600	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF35_RS19605	PF00005	ABC transporter
BF35_RS19610	PF00950	ABC 3 transport family
BF35_RS19615	PF01475	Ferric uptake regulator family
BF35_RS19620	PF04551	GcpE protein
BF35_RS19640	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
BF35_RS19640	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
BF35_RS19645	PF07690	Major Facilitator Superfamily
BF35_RS19650	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS19650	PF03717	Penicillin-binding Protein dimerisation domain
BF35_RS19655	PF12849	PBP superfamily domain
BF35_RS19660	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS19665	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS19670	PF00005	ABC transporter
BF35_RS19675	PF01895	PhoU domain
BF35_RS19680	PF00483	Nucleotidyl transferase
BF35_RS19685	PF00471	Ribosomal protein L33
BF35_RS19690	PF01812	5-formyltetrahydrofolate cyclo-ligase family
BF35_RS19695	PF06014	Bacterial protein of unknown function (DUF910)
BF35_RS19700	PF00480	ROK family
BF35_RS19705	PF10958	Protein of unknown function (DUF2759)
BF35_RS19710	PF00753	Metallo-beta-lactamase superfamily
BF35_RS19720	PF01022	Bacterial regulatory protein, arsR family
BF35_RS19730	PF01053	Cys/Met metabolism PLP-dependent enzyme
BF35_RS19735	PF01053	Cys/Met metabolism PLP-dependent enzyme
BF35_RS19740	PF02219	Methylenetetrahydrofolate reductase
BF35_RS19740	PF02574	Homocysteine S-methyltransferase
BF35_RS19745	PF02965	Vitamin B12 dependent methionine synthase, activation domain
BF35_RS19745	PF02607	B12 binding domain
BF35_RS19745	PF02310	B12 binding domain
BF35_RS19745	PF00809	Pterin binding enzyme
BF35_RS19745	PF02574	Homocysteine S-methyltransferase
BF35_RS19750	PF04101	Glycosyltransferase family 28 C-terminal domain
BF35_RS19750	PF03033	Glycosyltransferase family 28 N-terminal domain
BF35_RS19780	PF00375	Sodium:dicarboxylate symporter family
BF35_RS19785	PF11117	Protein of unknown function (DUF2626)
BF35_RS19795	PF00437	Type II/IV secretion system protein
BF35_RS19810	PF00239	Resolvase, N terminal domain
BF35_RS19810	PF02796	Helix-turn-helix domain of resolvase
BF35_RS19860	PF00437	Type II/IV secretion system protein
BF35_RS19865	PF00482	Type II secretion system (T2SS), protein F
BF35_RS19875	PF07963	Prokaryotic N-terminal methylation motif
BF35_RS19900	PF01202	Shikimate kinase
BF35_RS19905	PF14038	YqzE-like protein
BF35_RS19925	PF11079	Bacterial protein YqhG of unknown function
BF35_RS19930	PF00176	SNF2 family N-terminal domain
BF35_RS19930	PF00271	Helicase conserved C-terminal domain
BF35_RS19935	PF08669	Glycine cleavage T-protein C-terminal barrel domain
BF35_RS19935	PF01571	Aminomethyltransferase folate-binding domain
BF35_RS19940	PF02347	Glycine cleavage system P-protein
BF35_RS19945	PF02347	Glycine cleavage system P-protein
BF35_RS19960	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS19965	PF00005	ABC transporter
BF35_RS20005	PF00893	Small Multidrug Resistance protein
BF35_RS20010	PF00893	Small Multidrug Resistance protein
BF35_RS20020	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
BF35_RS20020	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS20030	PF00581	Rhodanese-like domain
BF35_RS20035	PF03099	Biotin/lipoate A/B protein ligase family
BF35_RS20060	PF01325	Iron dependent repressor, N-terminal DNA binding domain
BF35_RS20060	PF02742	Iron dependent repressor, metal binding and dimerisation domain
BF35_RS20065	PF13419	Haloacid dehalogenase-like hydrolase
BF35_RS20075	PF07136	Protein of unknown function (DUF1385)
BF35_RS20080	PF11085	Conserved membrane protein YqhR
BF35_RS20085	PF01220	Dehydroquinase class II
BF35_RS20090	PF00557	Metallopeptidase family M24
BF35_RS20090	PF01321	Creatinase/Prolidase N-terminal domain
BF35_RS20095	PF01132	Elongation factor P (EF-P) OB domain
BF35_RS20095	PF09285	Elongation factor P, C-terminal
BF35_RS20095	PF08207	Elongation factor P (EF-P) KOW-like domain
BF35_RS20120	PF09548	Stage III sporulation protein AB (spore_III_AB)
BF35_RS20125	PF06686	Stage III sporulation protein AC/AD protein family
BF35_RS20130	PF06686	Stage III sporulation protein AC/AD protein family
BF35_RS20135	PF09546	Stage III sporulation protein AE (spore_III_AE)
BF35_RS20140	PF09581	Stage III sporulation protein AF (Spore_III_AF)
BF35_RS20150	PF12685	SpoIIIAH-like protein
BF35_RS20160	PF00364	Biotin-requiring enzyme
BF35_RS20165	PF02785	Biotin carboxylase C-terminal domain
BF35_RS20165	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BF35_RS20165	PF00289	Biotin carboxylase, N-terminal domain
BF35_RS20170	PF03780	Asp23 family, cell envelope-related function
BF35_RS20175	PF01029	NusB family
BF35_RS20180	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
BF35_RS20180	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
BF35_RS20185	PF02601	Exonuclease VII, large subunit
BF35_RS20185	PF13742	OB-fold nucleic acid binding domain
BF35_RS20190	PF02609	Exonuclease VII small subunit
BF35_RS20195	PF00348	Polyprenyl synthetase
BF35_RS20200	PF02780	Transketolase, C-terminal domain
BF35_RS20200	PF02779	Transketolase, pyrimidine binding domain
BF35_RS20200	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
BF35_RS20205	PF01728	FtsJ-like methyltransferase
BF35_RS20205	PF01479	S4 domain
BF35_RS20210	PF02863	Arginine repressor, C-terminal domain
BF35_RS20210	PF01316	Arginine repressor, DNA binding domain
BF35_RS20215	PF13476	AAA domain
BF35_RS20220	PF05580	SpoIVB peptidase S55
BF35_RS20220	PF17820	PDZ domain
BF35_RS20225	PF00072	Response regulator receiver domain
BF35_RS20225	PF08769	Sporulation initiation factor Spo0A C terminal
BF35_RS20235	PF13411	MerR HTH family regulatory protein
BF35_RS20275	PF00589	Phage integrase family
BF35_RS20320	PF14174	YycC-like protein
BF35_RS20325	PF03009	Glycerophosphoryl diester phosphodiesterase family
BF35_RS20335	PF02954	Bacterial regulatory protein, Fis family
BF35_RS20335	PF00989	PAS fold
BF35_RS20335	PF00158	Sigma-54 interaction domain
BF35_RS20345	PF01515	Phosphate acetyl/butaryl transferase
BF35_RS20350	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
BF35_RS20350	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BF35_RS20355	PF00871	Acetokinase family
BF35_RS20360	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
BF35_RS20360	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS20365	PF00676	Dehydrogenase E1 component
BF35_RS20370	PF02780	Transketolase, C-terminal domain
BF35_RS20370	PF02779	Transketolase, pyrimidine binding domain
BF35_RS20375	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
BF35_RS20375	PF00364	Biotin-requiring enzyme
BF35_RS20375	PF02817	e3 binding domain
BF35_RS20385	PF01098	Cell cycle protein
BF35_RS20390	PF04239	Protein of unknown function (DUF421)
BF35_RS20395	PF00293	NUDIX domain
BF35_RS20395	PF09297	NADH pyrophosphatase zinc ribbon domain
BF35_RS20400	PF11208	Protein of unknown function (DUF2992)
BF35_RS20405	PF06491	Disulphide isomerase
BF35_RS20415	PF00497	Bacterial extracellular solute-binding proteins, family 3
BF35_RS20420	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS20425	PF00005	ABC transporter
BF35_RS20430	PF06081	Aromatic acid exporter family member 1
BF35_RS20430	PF11728	Putative aromatic acid exporter C-terminal domain
BF35_RS20435	PF03734	L,D-transpeptidase catalytic domain
BF35_RS20450	PF13302	Acetyltransferase (GNAT) domain
BF35_RS20455	PF01546	Peptidase family M20/M25/M40
BF35_RS20455	PF07687	Peptidase dimerisation domain
BF35_RS20465	PF11798	IMS family HHH motif
BF35_RS20465	PF00817	impB/mucB/samB family
BF35_RS20465	PF11799	impB/mucB/samB family C-terminal domain
BF35_RS20475	PF00753	Metallo-beta-lactamase superfamily
BF35_RS20475	PF12706	Beta-lactamase superfamily domain
BF35_RS20485	PF01842	ACT domain
BF35_RS20485	PF03315	Serine dehydratase beta chain
BF35_RS20490	PF03313	Serine dehydratase alpha chain
BF35_RS20495	PF14748	Pyrroline-5-carboxylate reductase dimerisation
BF35_RS20495	PF03807	NADP oxidoreductase coenzyme F420-dependent
BF35_RS20500	PF00753	Metallo-beta-lactamase superfamily
BF35_RS20505	PF00106	short chain dehydrogenase
BF35_RS20515	PF01118	Semialdehyde dehydrogenase, NAD binding domain
BF35_RS20515	PF02774	Semialdehyde dehydrogenase, dimerisation domain
BF35_RS20520	PF01960	ArgJ family
BF35_RS20525	PF00696	Amino acid kinase family
BF35_RS20530	PF00202	Aminotransferase class-III
BF35_RS20535	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
BF35_RS20535	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
BF35_RS20550	PF01037	Lrp/AsnC ligand binding domain
BF35_RS20550	PF13404	AsnC-type helix-turn-helix domain
BF35_RS20560	PF00149	Calcineurin-like phosphoesterase
BF35_RS20560	PF02872	5'-nucleotidase, C-terminal domain
BF35_RS20565	PF03553	Na+/H+ antiporter family
BF35_RS20575	PF00202	Aminotransferase class-III
BF35_RS20585	PF00155	Aminotransferase class I and II
BF35_RS20590	PF12697	Alpha/beta hydrolase family
BF35_RS20590	PF08241	Methyltransferase domain
BF35_RS20595	PF13847	Methyltransferase domain
BF35_RS20600	PF04055	Radical SAM superfamily
BF35_RS20600	PF06968	Biotin and Thiamin Synthesis associated domain
BF35_RS20610	PF00885	6,7-dimethyl-8-ribityllumazine synthase
BF35_RS20615	PF00925	GTP cyclohydrolase II
BF35_RS20615	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
BF35_RS20620	PF00677	Lumazine binding domain
BF35_RS20625	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
BF35_RS20625	PF01872	RibD C-terminal domain
BF35_RS20635	PF10827	Protein of unknown function (DUF2552) 
BF35_RS20640	PF12146	Serine aminopeptidase, S33
BF35_RS20645	PF00583	Acetyltransferase (GNAT) family
BF35_RS20650	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS20655	PF13726	Na+-H+ antiporter family
BF35_RS20655	PF03553	Na+/H+ antiporter family
BF35_RS20660	PF12146	Serine aminopeptidase, S33
BF35_RS20670	PF02872	5'-nucleotidase, C-terminal domain
BF35_RS20670	PF00746	LPXTG cell wall anchor motif
BF35_RS20670	PF00149	Calcineurin-like phosphoesterase
BF35_RS20670	PF00565	Staphylococcal nuclease homologue
BF35_RS20680	PF13673	Acetyltransferase (GNAT) domain
BF35_RS20680	PF04229	GrpB protein
BF35_RS20685	PF00248	Aldo/keto reductase family
BF35_RS20690	PF00248	Aldo/keto reductase family
BF35_RS20695	PF13072	Mother cell inhibitor of FtsZ
BF35_RS20700	PF00293	NUDIX domain
BF35_RS20710	PF01944	Stage II sporulation protein M
BF35_RS20715	PF01475	Ferric uptake regulator family
BF35_RS20720	PF14004	Protein of unknown function (DUF4227)
BF35_RS20725	PF02899	Phage integrase, N-terminal SAM-like domain
BF35_RS20725	PF00589	Phage integrase family
BF35_RS20735	PF01676	Metalloenzyme superfamily
BF35_RS20740	PF01048	Phosphorylase superfamily
BF35_RS20745	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
BF35_RS20745	PF02885	Glycosyl transferase family, helical bundle domain
BF35_RS20745	PF00591	Glycosyl transferase family, a/b domain
BF35_RS20750	PF01544	CorA-like Mg2+ transporter protein
BF35_RS20755	PF00860	Permease family
BF35_RS20765	PF01047	MarR family
BF35_RS20785	PF00005	ABC transporter
BF35_RS20790	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS20795	PF07943	Penicillin-binding protein 5, C-terminal domain
BF35_RS20795	PF00768	D-alanyl-D-alanine carboxypeptidase
BF35_RS20800	PF01740	STAS domain
BF35_RS20805	PF13581	Histidine kinase-like ATPase domain
BF35_RS20810	PF04545	Sigma-70, region 4
BF35_RS20810	PF04542	Sigma-70 region 2 
BF35_RS20810	PF04539	Sigma-70 region 3
BF35_RS20815	PF00209	Sodium:neurotransmitter symporter family
BF35_RS20825	PF12164	Stage V sporulation protein AA
BF35_RS20830	PF13782	Stage V sporulation protein AB
BF35_RS20835	PF03862	SpoVAC/SpoVAEB sporulation membrane protein
BF35_RS20840	PF07451	Stage V sporulation protein AD (SpoVAD)
BF35_RS20845	PF03862	SpoVAC/SpoVAEB sporulation membrane protein
BF35_RS20850	PF14097	Stage V sporulation protein AE1
BF35_RS20855	PF03323	Bacillus/Clostridium GerA spore germination protein
BF35_RS20865	PF06207	Protein of unknown function (DUF1002)
BF35_RS20870	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
BF35_RS20880	PF00583	Acetyltransferase (GNAT) family
BF35_RS20895	PF02616	Segregation and condensation protein ScpA
BF35_RS20905	PF04079	Segregation and condensation complex subunit ScpB
BF35_RS20915	PF01979	Amidohydrolase family
BF35_RS20920	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
BF35_RS20925	PF07702	UTRA domain
BF35_RS20925	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS20935	PF03123	CAT RNA binding domain
BF35_RS20935	PF00874	PRD domain
BF35_RS20940	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
BF35_RS20940	PF00367	phosphotransferase system, EIIB
BF35_RS20940	PF02378	Phosphotransferase system, EIIC 
BF35_RS20945	PF00381	PTS HPr component phosphorylation site
BF35_RS20950	PF05524	PEP-utilising enzyme, N-terminal
BF35_RS20950	PF00391	PEP-utilising enzyme, mobile domain
BF35_RS20950	PF02896	PEP-utilising enzyme, TIM barrel domain
BF35_RS20965	PF00881	Nitroreductase family
BF35_RS20970	PF08448	PAS fold
BF35_RS20970	PF00990	Diguanylate cyclase, GGDEF domain
BF35_RS20975	PF00144	Beta-lactamase
BF35_RS20980	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
BF35_RS20980	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
BF35_RS20995	PF03079	ARD/ARD' family
BF35_RS21000	PF00596	Class II Aldolase and Adducin N-terminal domain
BF35_RS21010	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain
BF35_RS21010	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain
BF35_RS21015	PF00155	Aminotransferase class I and II
BF35_RS21020	PF00795	Carbon-nitrogen hydrolase
BF35_RS21025	PF01636	Phosphotransferase enzyme family
BF35_RS21030	PF01008	Initiation factor 2 subunit family
BF35_RS21045	PF03551	Transcriptional regulator PadR-like family
BF35_RS21080	PF00293	NUDIX domain
BF35_RS21085	PF00108	Thiolase, N-terminal domain
BF35_RS21085	PF02803	Thiolase, C-terminal domain
BF35_RS21090	PF02463	RecF/RecN/SMC N terminal domain
BF35_RS21125	PF03459	TOBE domain
BF35_RS21125	PF17912	MalK OB fold domain
BF35_RS21125	PF00005	ABC transporter
BF35_RS21130	PF16657	Maltogenic Amylase, C-terminal domain
BF35_RS21130	PF00128	Alpha amylase, catalytic domain
BF35_RS21135	PF16657	Maltogenic Amylase, C-terminal domain
BF35_RS21135	PF02903	Alpha amylase, N-terminal ig-like domain
BF35_RS21135	PF00128	Alpha amylase, catalytic domain
BF35_RS21140	PF13416	Bacterial extracellular solute-binding protein
BF35_RS21145	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS21150	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS21155	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS21155	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
BF35_RS21160	PF00155	Aminotransferase class I and II
BF35_RS21170	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS21170	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS21180	PF14040	Deoxyribonuclease NucA/NucB
BF35_RS21190	PF01717	Cobalamin-independent synthase, Catalytic domain
BF35_RS21190	PF08267	Cobalamin-independent synthase, N-terminal domain
BF35_RS21205	PF07690	Major Facilitator Superfamily
BF35_RS21235	PF14177	YkyB-like protein
BF35_RS21240	PF02541	Ppx/GppA phosphatase family
BF35_RS21245	PF02503	Polyphosphate kinase middle domain
BF35_RS21245	PF13090	Polyphosphate kinase C-terminal domain 2
BF35_RS21245	PF17941	Polyphosphate kinase C-terminal domain 1
BF35_RS21245	PF13089	Polyphosphate kinase N-terminal domain
BF35_RS21255	PF00149	Calcineurin-like phosphoesterase
BF35_RS21255	PF10518	TAT (twin-arginine translocation) pathway signal sequence
BF35_RS21280	PF08796	Protein of unknown function (DUF1797)
BF35_RS21290	PF04308	Ribonuclease H-like
BF35_RS21305	PF03466	LysR substrate binding domain
BF35_RS21305	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS21310	PF00132	Bacterial transferase hexapeptide (six repeats)
BF35_RS21310	PF08503	Tetrahydrodipicolinate succinyltransferase N-terminal
BF35_RS21310	PF14602	Hexapeptide repeat of succinyl-transferase
BF35_RS21315	PF01546	Peptidase family M20/M25/M40
BF35_RS21315	PF07687	Peptidase dimerisation domain
BF35_RS21325	PF02254	TrkA-N domain
BF35_RS21325	PF02080	TrkA-C domain
BF35_RS21330	PF00753	Metallo-beta-lactamase superfamily
BF35_RS21330	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
BF35_RS21330	PF17770	Ribonuclease J C-terminal domain
BF35_RS21335	PF07288	Protein of unknown function (DUF1447)
BF35_RS21345	PF01327	Polypeptide deformylase
BF35_RS21355	PF00676	Dehydrogenase E1 component
BF35_RS21360	PF02779	Transketolase, pyrimidine binding domain
BF35_RS21360	PF02780	Transketolase, C-terminal domain
BF35_RS21365	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
BF35_RS21365	PF00364	Biotin-requiring enzyme
BF35_RS21365	PF02817	e3 binding domain
BF35_RS21370	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS21370	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
BF35_RS21410	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
BF35_RS21410	PF01276	Orn/Lys/Arg decarboxylase, major domain
BF35_RS21415	PF05256	Uncharacterised protein family (UPF0223)
BF35_RS21420	PF06335	Protein of unknown function (DUF1054)
BF35_RS21430	PF00459	Inositol monophosphatase family
BF35_RS21440	PF00679	Elongation factor G C-terminus
BF35_RS21440	PF14492	Elongation Factor G, domain II
BF35_RS21440	PF00009	Elongation factor Tu GTP binding domain
BF35_RS21440	PF03144	Elongation factor Tu domain 2
BF35_RS21445	PF14036	YlaH-like protein
BF35_RS21455	PF09963	Uncharacterized protein conserved in bacteria (DUF2197)
BF35_RS21465	PF13638	PIN domain
BF35_RS21465	PF02562	PhoH-like protein
BF35_RS21475	PF07408	Protein of unknown function (DUF1507)
BF35_RS21480	PF01098	Cell cycle protein
BF35_RS21485	PF02436	Conserved carboxylase domain
BF35_RS21485	PF00364	Biotin-requiring enzyme
BF35_RS21485	PF00289	Biotin carboxylase, N-terminal domain
BF35_RS21485	PF02785	Biotin carboxylase C-terminal domain
BF35_RS21485	PF00682	HMGL-like
BF35_RS21485	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BF35_RS21490	PF02628	Cytochrome oxidase assembly protein
BF35_RS21495	PF01040	UbiA prenyltransferase family
BF35_RS21500	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
BF35_RS21500	PF00034	Cytochrome c
BF35_RS21500	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
BF35_RS21505	PF00115	Cytochrome C and Quinol oxidase polypeptide I
BF35_RS21510	PF00510	Cytochrome c oxidase subunit III
BF35_RS21515	PF03626	Prokaryotic Cytochrome C oxidase subunit IV 
BF35_RS21520	PF09678	Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
BF35_RS21525	PF08868	YugN-like family
BF35_RS21530	PF00188	Cysteine-rich secretory protein family
BF35_RS21530	PF14504	CAP-associated N-terminal
BF35_RS21535	PF14071	Putative coat protein
BF35_RS21540	PF14003	YlbE-like protein
BF35_RS21545	PF00300	Histidine phosphatase superfamily (branch 1)
BF35_RS21550	PF06133	Control of competence regulator ComK, YlbF/YmcA
BF35_RS21555	PF09902	Uncharacterized protein conserved in bacteria (DUF2129)
BF35_RS21570	PF01467	Cytidylyltransferase-like
BF35_RS21575	PF07670	Nucleoside recognition
BF35_RS21580	PF01734	Patatin-like phospholipase
BF35_RS21585	PF13180	PDZ domain
BF35_RS21585	PF05362	Lon protease (S16) C-terminal proteolytic domain
BF35_RS21590	PF05636	HIGH Nucleotidyl Transferase
BF35_RS21595	PF02620	Large ribosomal RNA subunit accumulation protein YceD
BF35_RS21600	PF01783	Ribosomal L32p protein family
BF35_RS21610	PF00583	Acetyltransferase (GNAT) family
BF35_RS21615	PF02558	Ketopantoate reductase PanE/ApbA
BF35_RS21615	PF08546	Ketopantoate reductase PanE/ApbA C terminal
BF35_RS21620	PF10079	Bacillithiol biosynthesis BshC 
BF35_RS21625	PF01795	MraW methylase family
BF35_RS21630	PF04977	Septum formation initiator
BF35_RS21635	PF03793	PASTA domain
BF35_RS21635	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS21635	PF03717	Penicillin-binding Protein dimerisation domain
BF35_RS21645	PF01225	Mur ligase family, catalytic domain
BF35_RS21645	PF02875	Mur ligase family, glutamate ligase domain
BF35_RS21645	PF08245	Mur ligase middle domain
BF35_RS21650	PF00953	Glycosyl transferase family 4
BF35_RS21650	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 
BF35_RS21655	PF02875	Mur ligase family, glutamate ligase domain
BF35_RS21655	PF08245	Mur ligase middle domain
BF35_RS21660	PF01098	Cell cycle protein
BF35_RS21665	PF03033	Glycosyltransferase family 28 N-terminal domain
BF35_RS21665	PF04101	Glycosyltransferase family 28 C-terminal domain
BF35_RS21670	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
BF35_RS21670	PF01565	FAD binding domain 
BF35_RS21675	PF08478	POTRA domain, FtsQ-type
BF35_RS21675	PF03799	Cell division protein FtsQ
BF35_RS21680	PF02491	SHS2 domain inserted in FTSA
BF35_RS21685	PF00091	Tubulin/FtsZ family, GTPase domain
BF35_RS21685	PF12327	FtsZ family, C-terminal domain
BF35_RS21690	PF03419	Sporulation factor SpoIIGA 
BF35_RS21695	PF04545	Sigma-70, region 4
BF35_RS21695	PF04542	Sigma-70 region 2 
BF35_RS21700	PF04545	Sigma-70, region 4
BF35_RS21700	PF04542	Sigma-70 region 2 
BF35_RS21700	PF04539	Sigma-70 region 3
BF35_RS21705	PF05239	PRC-barrel domain
BF35_RS21710	PF02578	Multi-copper polyphenol oxidoreductase laccase
BF35_RS21715	PF01168	Alanine racemase, N-terminal domain
BF35_RS21720	PF04472	Cell division protein SepF
BF35_RS21725	PF02325	YGGT family
BF35_RS21730	PF17774	Putative RNA-binding domain in YlmH
BF35_RS21730	PF01479	S4 domain
BF35_RS21735	PF05103	DivIVA protein
BF35_RS21740	PF06827	Zinc finger found in FPG and IleRS
BF35_RS21740	PF00133	tRNA synthetases class I (I, L, M and V)
BF35_RS21740	PF08264	Anticodon-binding domain of tRNA
BF35_RS21750	PF01252	Signal peptidase (SPase) II
BF35_RS21755	PF00849	RNA pseudouridylate synthase
BF35_RS21755	PF01479	S4 domain
BF35_RS21760	PF00156	Phosphoribosyl transferase domain
BF35_RS21765	PF00860	Permease family
BF35_RS21770	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
BF35_RS21770	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
BF35_RS21775	PF01979	Amidohydrolase family
BF35_RS21780	PF00117	Glutamine amidotransferase class-I
BF35_RS21780	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
BF35_RS21785	PF02142	MGS-like domain
BF35_RS21785	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BF35_RS21785	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BF35_RS21790	PF00175	Oxidoreductase NAD-binding domain 
BF35_RS21790	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
BF35_RS21795	PF01180	Dihydroorotate dehydrogenase
BF35_RS21800	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
BF35_RS21805	PF00156	Phosphoribosyl transferase domain
BF35_RS21840	PF01321	Creatinase/Prolidase N-terminal domain
BF35_RS21840	PF00557	Metallopeptidase family M24
BF35_RS21850	PF05670	NFACT protein RNA binding domain
BF35_RS21855	PF00689	Cation transporting ATPase, C-terminus
BF35_RS21855	PF00690	Cation transporter/ATPase, N-terminus
BF35_RS21860	PF03755	YicC-like family, N-terminal region 
BF35_RS21860	PF08340	Domain of unknown function (DUF1732)
BF35_RS21865	PF04025	Domain of unknown function (DUF370)
BF35_RS21870	PF00625	Guanylate kinase
BF35_RS21875	PF01192	RNA polymerase Rpb6 
BF35_RS21880	PF02441	Flavoprotein
BF35_RS21880	PF04127	DNA / pantothenate metabolism flavoprotein
BF35_RS21885	PF00271	Helicase conserved C-terminal domain
BF35_RS21885	PF04851	Type III restriction enzyme, res subunit
BF35_RS21885	PF18319	PriA DNA helicase Cys-rich region (CRR) domain
BF35_RS21885	PF17764	3′ DNA-binding domain (3′BD)
BF35_RS21885	PF18074	Primosomal protein N C-terminal domain
BF35_RS21890	PF01327	Polypeptide deformylase
BF35_RS21895	PF02911	Formyl transferase, C-terminal domain
BF35_RS21895	PF00551	Formyl transferase
BF35_RS21900	PF01029	NusB family
BF35_RS21900	PF01189	16S rRNA methyltransferase RsmB/F
BF35_RS21905	PF04055	Radical SAM superfamily
BF35_RS21915	PF00069	Protein kinase domain
BF35_RS21915	PF03793	PASTA domain
BF35_RS21920	PF16745	RsgA N-terminal domain
BF35_RS21920	PF03193	RsgA GTPase
BF35_RS21925	PF00834	Ribulose-phosphate 3 epimerase family
BF35_RS21930	PF04263	Thiamin pyrophosphokinase, catalytic domain
BF35_RS21930	PF04265	Thiamin pyrophosphokinase, vitamin B1 binding domain
BF35_RS21935	PF08183	Stage V sporulation protein family
BF35_RS21940	PF00830	Ribosomal L28 family
BF35_RS21945	PF03780	Asp23 family, cell envelope-related function
BF35_RS21950	PF02734	DAK2 domain
BF35_RS21950	PF13684	Dihydroxyacetone kinase family
BF35_RS21955	PF00270	DEAD/DEAH box helicase
BF35_RS21955	PF00271	Helicase conserved C-terminal domain
BF35_RS21955	PF17191	RecG wedge domain
BF35_RS21960	PF03061	Thioesterase superfamily
BF35_RS21965	PF02504	Fatty acid synthesis protein
BF35_RS21970	PF00698	Acyl transferase domain
BF35_RS21980	PF00550	Phosphopantetheine attachment site
BF35_RS21985	PF00035	Double-stranded RNA binding motif
BF35_RS21985	PF14622	Ribonuclease-III-like
BF35_RS21990	PF06470	SMC proteins Flexible Hinge Domain
BF35_RS21990	PF02463	RecF/RecN/SMC N terminal domain
BF35_RS21995	PF00448	SRP54-type protein, GTPase domain
BF35_RS21995	PF02881	SRP54-type protein, helical bundle domain
BF35_RS22000	PF04297	Putative helix-turn-helix protein, YlxM / p13 like
BF35_RS22005	PF00448	SRP54-type protein, GTPase domain
BF35_RS22005	PF02881	SRP54-type protein, helical bundle domain
BF35_RS22005	PF02978	Signal peptide binding domain
BF35_RS22010	PF00886	Ribosomal protein S16
BF35_RS22020	PF01782	RimM N-terminal domain
BF35_RS22020	PF05239	PRC-barrel domain
BF35_RS22025	PF01746	tRNA (Guanine-1)-methyltransferase
BF35_RS22030	PF01245	Ribosomal protein L19
BF35_RS22035	PF10502	Signal peptidase, peptidase S26 
BF35_RS22040	PF01926	50S ribosome-binding GTPase
BF35_RS22045	PF01351	Ribonuclease HII
BF35_RS22050	PF00549	CoA-ligase
BF35_RS22050	PF08442	ATP-grasp domain
BF35_RS22055	PF00549	CoA-ligase
BF35_RS22055	PF02629	CoA binding domain
BF35_RS22060	PF02481	DNA recombination-mediator protein A
BF35_RS22065	PF01396	Topoisomerase DNA binding C4 zinc finger
BF35_RS22065	PF01751	Toprim domain
BF35_RS22065	PF01131	DNA topoisomerase
BF35_RS22070	PF01134	Glucose inhibited division protein A
BF35_RS22075	PF00589	Phage integrase family
BF35_RS22075	PF02899	Phage integrase, N-terminal SAM-like domain
BF35_RS22080	PF00227	Proteasome subunit
BF35_RS22085	PF00004	ATPase family associated with various cellular activities (AAA)
BF35_RS22085	PF10431	C-terminal, D2-small domain, of ClpB protein 
BF35_RS22085	PF07724	AAA domain (Cdc48 subfamily)
BF35_RS22090	PF08222	CodY helix-turn-helix domain
BF35_RS22090	PF06018	CodY GAF-like domain
BF35_RS22095	PF00318	Ribosomal protein S2
BF35_RS22100	PF00889	Elongation factor TS
BF35_RS22105	PF00696	Amino acid kinase family
BF35_RS22110	PF01765	Ribosome recycling factor
BF35_RS22115	PF01255	Putative undecaprenyl diphosphate synthase
BF35_RS22125	PF13288	DXP reductoisomerase C-terminal domain
BF35_RS22125	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
BF35_RS22125	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
BF35_RS22130	PF17820	PDZ domain
BF35_RS22130	PF02163	Peptidase family M50
BF35_RS22135	PF03129	Anticodon binding domain
BF35_RS22135	PF04073	Aminoacyl-tRNA editing domain
BF35_RS22135	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BF35_RS22140	PF07733	Bacterial DNA polymerase III alpha NTPase domain
BF35_RS22140	PF00929	Exonuclease
BF35_RS22140	PF11490	DNA polymerase III polC-type N-terminus II
BF35_RS22140	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
BF35_RS22140	PF14579	Helix-hairpin-helix motif
BF35_RS22140	PF14480	DNA polymerase III polC-type N-terminus I
BF35_RS22140	PF02811	PHP domain
BF35_RS22145	PF02576	RimP N-terminal domain
BF35_RS22145	PF17384	RimP C-terminal SH3 domain
BF35_RS22150	PF00575	S1 RNA binding domain
BF35_RS22150	PF13184	NusA-like KH domain
BF35_RS22150	PF08529	NusA N-terminal domain
BF35_RS22155	PF04296	Protein of unknown function (DUF448)
BF35_RS22160	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
BF35_RS22165	PF11987	Translation-initiation factor 2
BF35_RS22165	PF04760	Translation initiation factor IF-2, N-terminal region
BF35_RS22165	PF00009	Elongation factor Tu GTP binding domain
BF35_RS22170	PF04456	Protein of unknown function (DUF503)
BF35_RS22175	PF02033	Ribosome-binding factor A
BF35_RS22180	PF16198	tRNA pseudouridylate synthase B C-terminal domain
BF35_RS22180	PF01509	TruB family pseudouridylate synthase (N terminal domain)
BF35_RS22185	PF01687	Riboflavin kinase
BF35_RS22185	PF06574	FAD synthetase
BF35_RS22190	PF00312	Ribosomal protein S15
BF35_RS22195	PF00013	KH domain
BF35_RS22195	PF03725	3' exoribonuclease family, domain 2
BF35_RS22195	PF00575	S1 RNA binding domain
BF35_RS22195	PF01138	3' exoribonuclease family, domain 1
BF35_RS22195	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
BF35_RS22200	PF01522	Polysaccharide deacetylase
BF35_RS22205	PF05193	Peptidase M16 inactive domain
BF35_RS22205	PF00675	Insulinase (Peptidase family M16)
BF35_RS22210	PF05239	PRC-barrel domain
BF35_RS22215	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
BF35_RS22215	PF16924	Dipicolinate synthase subunit A N-terminal domain
BF35_RS22220	PF02441	Flavoprotein
BF35_RS22225	PF01118	Semialdehyde dehydrogenase, NAD binding domain
BF35_RS22225	PF02774	Semialdehyde dehydrogenase, dimerisation domain
BF35_RS22230	PF13840	ACT domain 
BF35_RS22230	PF00696	Amino acid kinase family
BF35_RS22235	PF00701	Dihydrodipicolinate synthetase family
BF35_RS22245	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
BF35_RS22245	PF17770	Ribonuclease J C-terminal domain
BF35_RS22245	PF00753	Metallo-beta-lactamase superfamily
BF35_RS22250	PF00574	Clp protease
BF35_RS22255	PF14035	YlzJ-like protein
BF35_RS22260	PF01580	FtsK/SpoIIIE family
BF35_RS22260	PF09397	Ftsk gamma domain
BF35_RS22260	PF17854	FtsK alpha domain
BF35_RS22265	PF07702	UTRA domain
BF35_RS22265	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS22270	PF02608	ABC transporter substrate-binding protein PnrA-like
BF35_RS22275	PF00005	ABC transporter
BF35_RS22280	PF02653	Branched-chain amino acid transport system / permease component
BF35_RS22285	PF02653	Branched-chain amino acid transport system / permease component
BF35_RS22290	PF05193	Peptidase M16 inactive domain
BF35_RS22295	PF00675	Insulinase (Peptidase family M16)
BF35_RS22295	PF05193	Peptidase M16 inactive domain
BF35_RS22305	PF11588	Protein of unknown function (DUF3243)
BF35_RS22310	PF11868	Protein of unknown function (DUF3388)
BF35_RS22315	PF13464	Domain of unknown function (DUF4115)
BF35_RS22320	PF01066	CDP-alcohol phosphatidyltransferase
BF35_RS22325	PF18146	Damage-inducible protein CinA KH domain
BF35_RS22325	PF02464	Competence-damaged protein
BF35_RS22325	PF00994	Probable molybdopterin binding domain
BF35_RS22330	PF00154	recA bacterial DNA recombination protein
BF35_RS22335	PF12072	Domain of unknown function (DUF3552)
BF35_RS22335	PF01966	HD domain
BF35_RS22335	PF00013	KH domain
BF35_RS22340	PF13277	YmdB-like protein
BF35_RS22345	PF04232	Stage V sporulation protein S (SpoVS)
BF35_RS22350	PF01244	Membrane dipeptidase (Peptidase family M19)
BF35_RS22355	PF17147	Pyruvate:ferredoxin oxidoreductase core domain II
BF35_RS22355	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
BF35_RS22355	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
BF35_RS22360	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BF35_RS22365	PF04055	Radical SAM superfamily
BF35_RS22365	PF01938	TRAM domain
BF35_RS22365	PF00919	Uncharacterized protein family UPF0004
BF35_RS22370	PF06133	Control of competence regulator ComK, YlbF/YmcA
BF35_RS22375	PF10628	Outer spore coat protein E (CotE)
BF35_RS22380	PF01624	MutS domain I
BF35_RS22380	PF05188	MutS domain II
BF35_RS22380	PF05192	MutS domain III
BF35_RS22380	PF05190	MutS family domain IV
BF35_RS22380	PF00488	MutS domain V
BF35_RS22385	PF01119	DNA mismatch repair protein, C-terminal domain
BF35_RS22385	PF08676	MutL C terminal dimerisation domain
BF35_RS22390	PF02275	Linear amide C-N hydrolases, choloylglycine hydrolase family
BF35_RS22400	PF00350	Dynamin family
BF35_RS22405	PF00884	Sulfatase
BF35_RS22415	PF07486	Cell Wall Hydrolase
BF35_RS22420	PF00082	Subtilase family
BF35_RS22425	PF00388	Phosphatidylinositol-specific phospholipase C, X domain
BF35_RS22435	PF00155	Aminotransferase class I and II
BF35_RS22435	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS22440	PF03788	LrgA family
BF35_RS22445	PF04172	LrgB-like family 
BF35_RS22450	PF10787	Uncharacterised protein from bacillus cereus group
BF35_RS22455	PF02567	Phenazine biosynthesis-like protein
BF35_RS22470	PF02719	Polysaccharide biosynthesis protein
BF35_RS22470	PF08485	Polysaccharide biosynthesis protein C-terminal
BF35_RS22475	PF16363	GDP-mannose 4,6 dehydratase
BF35_RS22485	PF03033	Glycosyltransferase family 28 N-terminal domain
BF35_RS22485	PF04101	Glycosyltransferase family 28 C-terminal domain
BF35_RS22490	PF00990	Diguanylate cyclase, GGDEF domain
BF35_RS22490	PF00563	EAL domain
BF35_RS22490	PF03707	Bacterial signalling protein N terminal repeat
BF35_RS22515	PF07687	Peptidase dimerisation domain
BF35_RS22515	PF01546	Peptidase family M20/M25/M40
BF35_RS22520	PF07934	8-oxoguanine DNA glycosylase, N-terminal domain
BF35_RS22520	PF00730	HhH-GPD superfamily base excision DNA repair protein
BF35_RS22525	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
BF35_RS22525	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
BF35_RS22530	PF12833	Helix-turn-helix domain
BF35_RS22530	PF02805	Metal binding domain of Ada
BF35_RS22535	PF03372	Endonuclease/Exonuclease/phosphatase family
BF35_RS22540	PF01497	Periplasmic binding protein
BF35_RS22545	PF01032	FecCD transport family
BF35_RS22550	PF01032	FecCD transport family
BF35_RS22555	PF00005	ABC transporter
BF35_RS22560	PF00756	Putative esterase
BF35_RS22570	PF02583	Metal-sensitive transcriptional repressor
BF35_RS22575	PF00403	Heavy-metal-associated domain
BF35_RS22580	PF00403	Heavy-metal-associated domain
BF35_RS22590	PF00216	Bacterial DNA-binding protein
BF35_RS22595	PF01226	Formate/nitrite transporter
BF35_RS22600	PF00149	Calcineurin-like phosphoesterase
BF35_RS22600	PF10518	TAT (twin-arginine translocation) pathway signal sequence
BF35_RS22605	PF00041	Fibronectin type III domain
BF35_RS22605	PF00704	Glycosyl hydrolases family 18
BF35_RS22610	PF00324	Amino acid permease
BF35_RS22625	PF04238	Protein of unknown function (DUF420)
BF35_RS22630	PF00465	Iron-containing alcohol dehydrogenase 
BF35_RS22635	PF00455	DeoR C terminal sensor domain
BF35_RS22635	PF08220	DeoR-like helix-turn-helix domain
BF35_RS22640	PF00294	pfkB family carbohydrate kinase
BF35_RS22645	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
BF35_RS22645	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BF35_RS22650	PF01476	LysM domain
BF35_RS22650	PF06725	3D domain
BF35_RS22665	PF17209	Hfq protein
BF35_RS22680	PF00004	ATPase family associated with various cellular activities (AAA)
BF35_RS22680	PF17866	AAA lid domain
BF35_RS22690	PF03458	UPF0126 domain
BF35_RS22695	PF16360	GTP-binding GTPase Middle Region
BF35_RS22695	PF01926	50S ribosome-binding GTPase
BF35_RS22695	PF13167	GTP-binding GTPase N-terminal
BF35_RS22700	PF06838	Methionine gamma-lyase 
BF35_RS22705	PF13411	MerR HTH family regulatory protein
BF35_RS22710	PF00120	Glutamine synthetase, catalytic domain
BF35_RS22710	PF03951	Glutamine synthetase, beta-Grasp domain
BF35_RS22740	PF03551	Transcriptional regulator PadR-like family
BF35_RS22755	PF01726	LexA DNA binding domain
BF35_RS22755	PF00717	Peptidase S24-like
BF35_RS22760	PF00239	Resolvase, N terminal domain
BF35_RS22765	PF05979	Bacterial protein of unknown function (DUF896)
BF35_RS22770	PF00149	Calcineurin-like phosphoesterase
BF35_RS22770	PF02872	5'-nucleotidase, C-terminal domain
BF35_RS22775	PF00497	Bacterial extracellular solute-binding proteins, family 3
BF35_RS22780	PF00005	ABC transporter
BF35_RS22785	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS22790	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS22800	PF02779	Transketolase, pyrimidine binding domain
BF35_RS22800	PF00456	Transketolase, thiamine diphosphate binding domain
BF35_RS22800	PF02780	Transketolase, C-terminal domain
BF35_RS22805	PF10747	Sporulation inhibitor of replication protein SirA 
BF35_RS22810	PF03672	Uncharacterised protein family (UPF0154)
BF35_RS22815	PF00664	ABC transporter transmembrane region
BF35_RS22815	PF00005	ABC transporter
BF35_RS22820	PF00005	ABC transporter
BF35_RS22820	PF00664	ABC transporter transmembrane region
BF35_RS22835	PF01471	Putative peptidoglycan binding domain
BF35_RS22835	PF01510	N-acetylmuramoyl-L-alanine amidase
BF35_RS22845	PF01925	Sulfite exporter TauE/SafE
BF35_RS22855	PF13344	Haloacid dehalogenase-like hydrolase
BF35_RS22855	PF00293	NUDIX domain
BF35_RS22860	PF04172	LrgB-like family 
BF35_RS22865	PF03788	LrgA family
BF35_RS22870	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS22870	PF03466	LysR substrate binding domain
BF35_RS22880	PF00005	ABC transporter
BF35_RS22890	PF07687	Peptidase dimerisation domain
BF35_RS22890	PF01546	Peptidase family M20/M25/M40
BF35_RS22900	PF02683	Cytochrome C biogenesis protein transmembrane region
BF35_RS22905	PF07301	Protein of unknown function (DUF1453)
BF35_RS22920	PF11084	Protein of unknown function (DUF2621)
BF35_RS22945	PF08241	Methyltransferase domain
BF35_RS22950	PF09021	HutP
BF35_RS22955	PF00221	Aromatic amino acid lyase
BF35_RS22960	PF01175	Urocanase Rossmann-like domain
BF35_RS22960	PF17392	Urocanase C-terminal domain
BF35_RS22960	PF17391	Urocanase N-terminal domain
BF35_RS22965	PF01979	Amidohydrolase family
BF35_RS22970	PF00491	Arginase family
BF35_RS22975	PF02559	CarD-like/TRCF domain
BF35_RS22980	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
BF35_RS22985	PF01645	Conserved region in glutamate synthase
BF35_RS22995	PF00474	Sodium:solute symporter family
BF35_RS23000	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS23005	PF01738	Dienelactone hydrolase family
BF35_RS23010	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS23010	PF00989	PAS fold
BF35_RS23010	PF13188	PAS domain
BF35_RS23010	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS23010	PF13426	PAS domain
BF35_RS23020	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF35_RS23020	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS23050	PF05532	CsbD-like
BF35_RS23070	PF01381	Helix-turn-helix
BF35_RS23075	PF00005	ABC transporter
BF35_RS23085	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS23085	PF00501	AMP-binding enzyme
BF35_RS23090	PF02632	BioY family
BF35_RS23095	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS23095	PF00501	AMP-binding enzyme
BF35_RS23100	PF00108	Thiolase, N-terminal domain
BF35_RS23100	PF02803	Thiolase, C-terminal domain
BF35_RS23110	PF00293	NUDIX domain
BF35_RS23110	PF13344	Haloacid dehalogenase-like hydrolase
BF35_RS23115	PF02272	DHHA1 domain
BF35_RS23115	PF01411	tRNA synthetases class II (A)
BF35_RS23115	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BF35_RS23125	PF07690	Major Facilitator Superfamily
BF35_RS23135	PF08179	Small acid-soluble spore protein P family
BF35_RS23145	PF01522	Polysaccharide deacetylase
BF35_RS23155	PF00330	Aconitase family (aconitate hydratase)
BF35_RS23155	PF00694	Aconitase C-terminal domain
BF35_RS23160	PF00664	ABC transporter transmembrane region
BF35_RS23160	PF00005	ABC transporter
BF35_RS23160	PF03412	Peptidase C39 family
BF35_RS23170	PF00578	AhpC/TSA family
BF35_RS23175	PF14579	Helix-hairpin-helix motif
BF35_RS23175	PF02811	PHP domain
BF35_RS23175	PF00929	Exonuclease
BF35_RS23175	PF11490	DNA polymerase III polC-type N-terminus II
BF35_RS23175	PF07733	Bacterial DNA polymerase III alpha NTPase domain
BF35_RS23175	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
BF35_RS23175	PF01336	OB-fold nucleic acid binding domain
BF35_RS23180	PF13040	Fur-regulated basic protein B
BF35_RS23185	PF08177	Small acid-soluble spore protein N family
BF35_RS23195	PF01476	LysM domain
BF35_RS23195	PF00704	Glycosyl hydrolases family 18
BF35_RS23200	PF01385	Probable transposase
BF35_RS23200	PF07282	Putative transposase DNA-binding domain
BF35_RS23200	PF12323	Helix-turn-helix domain
BF35_RS23205	PF03061	Thioesterase superfamily
BF35_RS23210	PF01521	Iron-sulphur cluster biosynthesis
BF35_RS23215	PF02660	Glycerol-3-phosphate acyltransferase
BF35_RS23220	PF13597	Anaerobic ribonucleoside-triphosphate reductase
BF35_RS23220	PF03477	ATP cone domain
BF35_RS23230	PF00072	Response regulator receiver domain
BF35_RS23230	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS23235	PF13180	PDZ domain
BF35_RS23240	PF13380	CoA binding domain
BF35_RS23250	PF00204	DNA gyrase B
BF35_RS23250	PF00986	DNA gyrase B subunit, carboxyl terminus
BF35_RS23250	PF01751	Toprim domain
BF35_RS23250	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS23255	PF00521	DNA gyrase/topoisomerase IV, subunit A
BF35_RS23255	PF03989	DNA gyrase C-terminal domain, beta-propeller
BF35_RS23260	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
BF35_RS23260	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
BF35_RS23280	PF13732	Domain of unknown function (DUF4162)
BF35_RS23280	PF00005	ABC transporter
BF35_RS23295	PF04542	Sigma-70 region 2 
BF35_RS23295	PF08281	Sigma-70, region 4
BF35_RS23305	PF03816	Cell envelope-related transcriptional attenuator domain
BF35_RS23310	PF00375	Sodium:dicarboxylate symporter family
BF35_RS23315	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS23320	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS23325	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS23330	PF08241	Methyltransferase domain
BF35_RS23365	PF13520	Amino acid permease
BF35_RS23380	PF03323	Bacillus/Clostridium GerA spore germination protein
BF35_RS23390	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
BF35_RS23390	PF00384	Molybdopterin oxidoreductase
BF35_RS23390	PF01568	Molydopterin dinucleotide binding domain
BF35_RS23390	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BF35_RS23390	PF00037	4Fe-4S binding domain
BF35_RS23395	PF07849	Protein of unknown function (DUF1641)
BF35_RS23400	PF10057	Uncharacterized conserved protein (DUF2294)
BF35_RS23405	PF02634	FdhD/NarQ family
BF35_RS23410	PF06463	Molybdenum Cofactor Synthesis C
BF35_RS23410	PF04055	Radical SAM superfamily
BF35_RS23415	PF01226	Formate/nitrite transporter
BF35_RS23420	PF00899	ThiF family
BF35_RS23425	PF03453	MoeA N-terminal region (domain I and II)
BF35_RS23425	PF03454	MoeA C-terminal region (domain IV)
BF35_RS23425	PF00994	Probable molybdopterin binding domain
BF35_RS23430	PF02391	MoaE protein
BF35_RS23440	PF10609	NUBPL iron-transfer P-loop NTPase
BF35_RS23455	PF06961	Protein of unknown function (DUF1294)
BF35_RS23460	PF00892	EamA-like transporter family
BF35_RS23465	PF02681	Divergent PAP2 family
BF35_RS23470	PF13243	Squalene-hopene cyclase C-terminal domain
BF35_RS23470	PF13249	Squalene-hopene cyclase N-terminal domain
BF35_RS23475	PF14151	YfhD-like protein
BF35_RS23485	PF00171	Aldehyde dehydrogenase family
BF35_RS23490	PF06196	Protein of unknown function (DUF997)
BF35_RS23495	PF00474	Sodium:solute symporter family
BF35_RS23500	PF01156	Inosine-uridine preferring nucleoside hydrolase
BF35_RS23510	PF14698	Argininosuccinate lyase C-terminal
BF35_RS23510	PF00206	Lyase
BF35_RS23520	PF00106	short chain dehydrogenase
BF35_RS23530	PF00132	Bacterial transferase hexapeptide (six repeats)
BF35_RS23540	PF00293	NUDIX domain
BF35_RS23550	PF00258	Flavodoxin
BF35_RS23560	PF00313	'Cold-shock' DNA-binding domain
BF35_RS23580	PF13039	Protein of unknown function (DUF3900)
BF35_RS23580	PF13037	Domain of unknown function (DUF3898)
BF35_RS23600	PF13333	Integrase core domain
BF35_RS23600	PF00665	Integrase core domain
BF35_RS23600	PF13276	HTH-like domain
BF35_RS23605	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS23620	PF02308	MgtC family
BF35_RS23625	PF18496	Collagenase G catalytic helper subdomain
BF35_RS23625	PF08453	Peptidase family M9 N-terminal
BF35_RS23625	PF01752	Collagenase
BF35_RS23630	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS23630	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS23630	PF00989	PAS fold
BF35_RS23645	PF01022	Bacterial regulatory protein, arsR family
BF35_RS23650	PF01520	N-acetylmuramoyl-L-alanine amidase
BF35_RS23650	PF00395	S-layer homology domain
BF35_RS23655	PF07968	Leukocidin/Hemolysin toxin family
BF35_RS23660	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS23675	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
BF35_RS23690	PF00144	Beta-lactamase
BF35_RS23695	PF01565	FAD binding domain 
BF35_RS23695	PF02913	FAD linked oxidases, C-terminal domain
BF35_RS23700	PF01758	Sodium Bile acid symporter family
BF35_RS23710	PF18801	response regulator aspartate phosphatase H, N terminal
BF35_RS23720	PF02696	Uncharacterized ACR, YdiU/UPF0061 family
BF35_RS23725	PF00107	Zinc-binding dehydrogenase
BF35_RS23725	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS23730	PF01022	Bacterial regulatory protein, arsR family
BF35_RS23735	PF01494	FAD binding domain
BF35_RS23740	PF03009	Glycerophosphoryl diester phosphodiesterase family
BF35_RS23755	PF03466	LysR substrate binding domain
BF35_RS23755	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS23760	PF07690	Major Facilitator Superfamily
BF35_RS23770	PF00144	Beta-lactamase
BF35_RS23775	PF04371	Porphyromonas-type peptidyl-arginine deiminase
BF35_RS23795	PF04371	Porphyromonas-type peptidyl-arginine deiminase
BF35_RS23800	PF01432	Peptidase family M3
BF35_RS23800	PF08439	Oligopeptidase F
BF35_RS23805	PF00797	N-acetyltransferase
BF35_RS23810	PF09154	Domain of unknown function (DUF1939)
BF35_RS23810	PF00128	Alpha amylase, catalytic domain
BF35_RS23820	PF00488	MutS domain V
BF35_RS23820	PF01713	Smr domain
BF35_RS23835	PF05175	Methyltransferase small domain
BF35_RS23835	PF17827	PrmC N-terminal domain
BF35_RS23840	PF00107	Zinc-binding dehydrogenase
BF35_RS23840	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS23845	PF03466	LysR substrate binding domain
BF35_RS23845	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS23855	PF10901	Protein of unknown function (DUF2690)
BF35_RS23860	PF13302	Acetyltransferase (GNAT) domain
BF35_RS23880	PF05675	Protein of unknown function (DUF817)
BF35_RS23885	PF01032	FecCD transport family
BF35_RS23890	PF01032	FecCD transport family
BF35_RS23895	PF01497	Periplasmic binding protein
BF35_RS23910	PF03600	Citrate transporter
BF35_RS23915	PF08830	Protein of unknown function (DUF1806)
BF35_RS23920	PF02585	GlcNAc-PI de-N-acetylase
BF35_RS23945	PF07690	Major Facilitator Superfamily
BF35_RS23950	PF00324	Amino acid permease
BF35_RS23955	PF00107	Zinc-binding dehydrogenase
BF35_RS23955	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS23960	PF03551	Transcriptional regulator PadR-like family
BF35_RS23975	PF00753	Metallo-beta-lactamase superfamily
BF35_RS24015	PF00144	Beta-lactamase
BF35_RS24040	PF01183	Glycosyl hydrolases family 25
BF35_RS24040	PF01471	Putative peptidoglycan binding domain
BF35_RS24045	PF00753	Metallo-beta-lactamase superfamily
BF35_RS24055	PF03063	Prismane/CO dehydrogenase family
BF35_RS24075	PF13732	Domain of unknown function (DUF4162)
BF35_RS24075	PF00005	ABC transporter
BF35_RS24080	PF01061	ABC-2 type transporter
BF35_RS24085	PF05656	Protein of unknown function (DUF805)
BF35_RS24105	PF01810	LysE type translocator
BF35_RS24110	PF00535	Glycosyl transferase family 2
BF35_RS24110	PF18674	TarS beta-glycosyltransferase C-terminal domain 1
BF35_RS24115	PF04542	Sigma-70 region 2 
BF35_RS24120	PF12791	Anti-sigma factor N-terminus
BF35_RS24125	PF01522	Polysaccharide deacetylase
BF35_RS24130	PF01022	Bacterial regulatory protein, arsR family
BF35_RS24145	PF01638	HxlR-like helix-turn-helix
BF35_RS24150	PF02525	Flavodoxin-like fold
BF35_RS24155	PF13193	AMP-binding enzyme C-terminal domain
BF35_RS24155	PF00501	AMP-binding enzyme
BF35_RS24160	PF13302	Acetyltransferase (GNAT) domain
BF35_RS24180	PF02567	Phenazine biosynthesis-like protein
BF35_RS24215	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
BF35_RS24215	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
BF35_RS24220	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS24220	PF07702	UTRA domain
BF35_RS24225	PF03960	ArsC family
BF35_RS24255	PF03928	Haem-degrading
BF35_RS24265	PF00550	Phosphopantetheine attachment site
BF35_RS24265	PF00109	Beta-ketoacyl synthase, N-terminal domain
BF35_RS24265	PF00107	Zinc-binding dehydrogenase
BF35_RS24265	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS24265	PF16197	Ketoacyl-synthetase C-terminal extension
BF35_RS24265	PF02801	Beta-ketoacyl synthase, C-terminal domain
BF35_RS24265	PF00698	Acyl transferase domain
BF35_RS24265	PF08659	KR domain
BF35_RS24265	PF14765	Polyketide synthase dehydratase
BF35_RS24280	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
BF35_RS24280	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
BF35_RS24285	PF02779	Transketolase, pyrimidine binding domain
BF35_RS24285	PF02780	Transketolase, C-terminal domain
BF35_RS24285	PF00456	Transketolase, thiamine diphosphate binding domain
BF35_RS24290	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
BF35_RS24290	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
BF35_RS24295	PF00923	Transaldolase/Fructose-6-phosphate aldolase
BF35_RS24305	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
BF35_RS24305	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
BF35_RS24310	PF10282	Lactonase, 7-bladed beta-propeller
BF35_RS24315	PF06906	Protein of unknown function (DUF1272)
BF35_RS24320	PF00805	Pentapeptide repeats (8 copies)
BF35_RS24325	PF00892	EamA-like transporter family
BF35_RS24335	PF01370	NAD dependent epimerase/dehydratase family
BF35_RS24340	PF08484	C-methyltransferase C-terminal domain
BF35_RS24340	PF08421	Putative zinc binding domain
BF35_RS24345	PF16363	GDP-mannose 4,6 dehydratase
BF35_RS24350	PF00483	Nucleotidyl transferase
BF35_RS24360	PF13411	MerR HTH family regulatory protein
BF35_RS24365	PF03471	Transporter associated domain
BF35_RS24365	PF01595	Cyclin M transmembrane N-terminal domain
BF35_RS24365	PF00571	CBS domain
BF35_RS24375	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS24395	PF07690	Major Facilitator Superfamily
BF35_RS24405	PF08003	Protein of unknown function (DUF1698)
BF35_RS24425	PF01594	AI-2E family transporter
BF35_RS24430	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
BF35_RS24430	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
BF35_RS24430	PF13288	DXP reductoisomerase C-terminal domain
BF35_RS24435	PF00579	tRNA synthetases class I (W and Y)
BF35_RS24440	PF00005	ABC transporter
BF35_RS24440	PF12704	MacB-like periplasmic core domain
BF35_RS24440	PF02687	FtsX-like permease family
BF35_RS24450	PF12464	Maltose acetyltransferase 
BF35_RS24450	PF14602	Hexapeptide repeat of succinyl-transferase
BF35_RS24455	PF00480	ROK family
BF35_RS24460	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS24465	PF13344	Haloacid dehalogenase-like hydrolase
BF35_RS24465	PF00293	NUDIX domain
BF35_RS24485	PF13350	Tyrosine phosphatase family
BF35_RS24495	PF13419	Haloacid dehalogenase-like hydrolase
BF35_RS24520	PF00005	ABC transporter
BF35_RS24540	PF00224	Pyruvate kinase, barrel domain
BF35_RS24540	PF02887	Pyruvate kinase, alpha/beta domain
BF35_RS24540	PF00391	PEP-utilising enzyme, mobile domain
BF35_RS24550	PF00881	Nitroreductase family
BF35_RS24555	PF01638	HxlR-like helix-turn-helix
BF35_RS24570	PF13393	Histidyl-tRNA synthetase
BF35_RS24570	PF03129	Anticodon binding domain
BF35_RS24575	PF04073	Aminoacyl-tRNA editing domain
BF35_RS24585	PF01381	Helix-turn-helix
BF35_RS24600	PF04231	Endonuclease I
BF35_RS24605	PF03606	C4-dicarboxylate anaerobic carrier
BF35_RS24610	PF03737	Aldolase/RraA
BF35_RS24625	PF02361	Cobalt transport protein
BF35_RS24630	PF00005	ABC transporter
BF35_RS24640	PF14256	YwiC-like protein
BF35_RS24665	PF02667	Short chain fatty acid transporter
BF35_RS24675	PF17440	Thiol-activated cytolysin beta sandwich domain
BF35_RS24675	PF01289	Thiol-activated cytolysin
BF35_RS24685	PF07690	Major Facilitator Superfamily
BF35_RS24690	PF01047	MarR family
BF35_RS24695	PF12697	Alpha/beta hydrolase family
BF35_RS24705	PF07690	Major Facilitator Superfamily
BF35_RS24710	PF14044	NETI protein
BF35_RS24715	PF09587	Bacterial capsule synthesis protein PGA_cap
BF35_RS24720	PF02557	D-alanyl-D-alanine carboxypeptidase
BF35_RS24750	PF01476	LysM domain
BF35_RS24750	PF01510	N-acetylmuramoyl-L-alanine amidase
BF35_RS24750	PF01471	Putative peptidoglycan binding domain
BF35_RS24760	PF01804	Penicillin amidase
BF35_RS24765	PF01497	Periplasmic binding protein
BF35_RS24765	PF12833	Helix-turn-helix domain
BF35_RS24770	PF07883	Cupin domain
BF35_RS24785	PF00266	Aminotransferase class-V
BF35_RS24790	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
BF35_RS24790	PF01842	ACT domain
BF35_RS24790	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BF35_RS24810	PF13520	Amino acid permease
BF35_RS24815	PF01037	Lrp/AsnC ligand binding domain
BF35_RS24820	PF00857	Isochorismatase family
BF35_RS24825	PF00586	AIR synthase related protein, N-terminal domain
BF35_RS24825	PF02769	AIR synthase related protein, C-terminal domain
BF35_RS24830	PF00708	Acylphosphatase
BF35_RS24830	PF17788	HypF Kae1-like domain
BF35_RS24830	PF01300	Telomere recombination
BF35_RS24830	PF07503	HypF finger
BF35_RS24835	PF00202	Aminotransferase class-III
BF35_RS24840	PF03315	Serine dehydratase beta chain
BF35_RS24840	PF01842	ACT domain
BF35_RS24845	PF03313	Serine dehydratase alpha chain
BF35_RS24860	PF13302	Acetyltransferase (GNAT) domain
BF35_RS24865	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BF35_RS24865	PF00672	HAMP domain
BF35_RS24865	PF02743	Cache domain
BF35_RS24910	PF18801	response regulator aspartate phosphatase H, N terminal
BF35_RS24915	PF00356	Bacterial regulatory proteins, lacI family
BF35_RS24920	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
BF35_RS24925	PF05116	Sucrose-6F-phosphate phosphohydrolase
BF35_RS24930	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
BF35_RS24930	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
BF35_RS24935	PF07690	Major Facilitator Superfamily
BF35_RS24945	PF17676	LD-carboxypeptidase C-terminal domain
BF35_RS24945	PF02016	LD-carboxypeptidase N-terminal domain
BF35_RS24960	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BF35_RS24960	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BF35_RS24965	PF04299	Putative FMN-binding domain
BF35_RS24970	PF00583	Acetyltransferase (GNAT) family
BF35_RS24975	PF01047	MarR family
BF35_RS24985	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS24985	PF00072	Response regulator receiver domain
BF35_RS24990	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS24990	PF00672	HAMP domain
BF35_RS24990	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS25005	PF02687	FtsX-like permease family
BF35_RS25010	PF00005	ABC transporter
BF35_RS25025	PF04072	Leucine carboxyl methyltransferase
BF35_RS25050	PF01381	Helix-turn-helix
BF35_RS25070	PF00291	Pyridoxal-phosphate dependent enzyme
BF35_RS25100	PF01810	LysE type translocator
BF35_RS25120	PF07690	Major Facilitator Superfamily
BF35_RS25130	PF00175	Oxidoreductase NAD-binding domain 
BF35_RS25130	PF00067	Cytochrome P450
BF35_RS25130	PF00667	FAD binding domain
BF35_RS25130	PF00258	Flavodoxin
BF35_RS25135	PF12802	MarR family
BF35_RS25145	PF08803	Putative mono-oxygenase ydhR
BF35_RS25160	PF12833	Helix-turn-helix domain
BF35_RS25160	PF02805	Metal binding domain of Ada
BF35_RS25170	PF01609	Transposase DDE domain
BF35_RS25180	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS25195	PF01037	Lrp/AsnC ligand binding domain
BF35_RS25205	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS25205	PF18665	Tetracyclin repressor-like, C-terminal domain
BF35_RS25210	PF07993	Male sterility protein
BF35_RS25210	PF00550	Phosphopantetheine attachment site
BF35_RS25215	PF07690	Major Facilitator Superfamily
BF35_RS25220	PF01609	Transposase DDE domain
BF35_RS25230	PF00196	Bacterial regulatory proteins, luxR family
BF35_RS25230	PF00072	Response regulator receiver domain
BF35_RS25260	PF01609	Transposase DDE domain
BF35_RS25270	PF01872	RibD C-terminal domain
BF35_RS25285	PF01022	Bacterial regulatory protein, arsR family
BF35_RS25290	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS25295	PF01758	Sodium Bile acid symporter family
BF35_RS25300	PF01451	Low molecular weight phosphotyrosine protein phosphatase
BF35_RS25325	PF01040	UbiA prenyltransferase family
BF35_RS25340	PF10057	Uncharacterized conserved protein (DUF2294)
BF35_RS25345	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
BF35_RS25345	PF00361	Proton-conducting membrane transporter
BF35_RS25350	PF10070	Uncharacterized protein conserved in bacteria (DUF2309)
BF35_RS25360	PF07859	alpha/beta hydrolase fold
BF35_RS25370	PF07690	Major Facilitator Superfamily
BF35_RS25380	PF00875	DNA photolyase
BF35_RS25380	PF03441	FAD binding domain of DNA photolyase
BF35_RS25385	PF03073	TspO/MBR family
BF35_RS25415	PF11181	Heat induced stress protein YflT
BF35_RS25430	PF01544	CorA-like Mg2+ transporter protein
BF35_RS25460	PF01022	Bacterial regulatory protein, arsR family
BF35_RS25475	PF03466	LysR substrate binding domain
BF35_RS25475	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BF35_RS25495	PF00857	Isochorismatase family
BF35_RS25500	PF00561	alpha/beta hydrolase fold
BF35_RS25505	PF00149	Calcineurin-like phosphoesterase
BF35_RS25505	PF17936	Bacterial Ig domain
BF35_RS25505	PF02872	5'-nucleotidase, C-terminal domain
BF35_RS25530	PF01235	Sodium:alanine symporter family
BF35_RS25535	PF04960	Glutaminase
BF35_RS25540	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS25545	PF08664	YcbB domain
BF35_RS25545	PF00072	Response regulator receiver domain
BF35_RS25550	PF03323	Bacillus/Clostridium GerA spore germination protein
BF35_RS25555	PF03845	Spore germination protein
BF35_RS25560	PF05504	Spore germination B3/ GerAC like, C-terminal 
BF35_RS25565	PF14748	Pyrroline-5-carboxylate reductase dimerisation
BF35_RS25565	PF03807	NADP oxidoreductase coenzyme F420-dependent
BF35_RS25570	PF13520	Amino acid permease
BF35_RS25575	PF02151	UvrB/uvrC motif
BF35_RS25575	PF08459	UvrC Helix-hairpin-helix N-terminal
BF35_RS25575	PF01541	GIY-YIG catalytic domain
BF35_RS25575	PF12826	Helix-hairpin-helix motif
BF35_RS25585	PF17853	GGDEF-like domain
BF35_RS25585	PF12833	Helix-turn-helix domain
BF35_RS25600	PF05791	Bacillus haemolytic enterotoxin (HBL)
BF35_RS25605	PF05791	Bacillus haemolytic enterotoxin (HBL)
BF35_RS25610	PF00989	PAS fold
BF35_RS25610	PF13426	PAS domain
BF35_RS25610	PF13188	PAS domain
BF35_RS25610	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS25610	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS25615	PF03323	Bacillus/Clostridium GerA spore germination protein
BF35_RS25620	PF03845	Spore germination protein
BF35_RS25625	PF05504	Spore germination B3/ GerAC like, C-terminal 
BF35_RS25630	PF01381	Helix-turn-helix
BF35_RS25635	PF00710	Asparaginase, N-terminal
BF35_RS25635	PF17763	Glutaminase/Asparaginase C-terminal domain
BF35_RS25640	PF10415	Fumarase C C-terminus
BF35_RS25640	PF00206	Lyase
BF35_RS25650	PF00107	Zinc-binding dehydrogenase
BF35_RS25650	PF08240	Alcohol dehydrogenase GroES-like domain
BF35_RS25650	PF13823	Alcohol dehydrogenase GroES-associated
BF35_RS25655	PF00269	Small, acid-soluble spore proteins, alpha/beta type
BF35_RS25660	PF11553	Protein of unknown function (DUF3231)
BF35_RS25665	PF10710	Protein of unknown function (DUF2512)
BF35_RS25670	PF00269	Small, acid-soluble spore proteins, alpha/beta type
BF35_RS25680	PF00324	Amino acid permease
BF35_RS25685	PF01810	LysE type translocator
BF35_RS25690	PF08892	YqcI/YcgG family
BF35_RS25695	PF07875	Coat F domain
BF35_RS25700	PF00753	Metallo-beta-lactamase superfamily
BF35_RS25710	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
BF35_RS25710	PF00391	PEP-utilising enzyme, mobile domain
BF35_RS25715	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS25725	PF02915	Rubrerythrin
BF35_RS25740	PF07670	Nucleoside recognition
BF35_RS25755	PF02770	Acyl-CoA dehydrogenase, middle domain
BF35_RS25755	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
BF35_RS25755	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
BF35_RS25770	PF07454	Stage II sporulation protein P (SpoIIP)
BF35_RS25775	PF03932	CutC family
BF35_RS25780	PF10502	Signal peptidase, peptidase S26 
BF35_RS25785	PF01614	Bacterial transcriptional regulator
BF35_RS25785	PF09339	IclR helix-turn-helix domain
BF35_RS25790	PF02682	Carboxyltransferase domain, subdomain C and D
BF35_RS25795	PF02626	Carboxyltransferase domain, subdomain A and B 
BF35_RS25800	PF03746	LamB/YcsF family
BF35_RS25815	PF01470	Pyroglutamyl peptidase
BF35_RS25820	PF02146	Sir2 family
BF35_RS25830	PF03717	Penicillin-binding Protein dimerisation domain
BF35_RS25830	PF00905	Penicillin binding protein transpeptidase domain
BF35_RS25835	PF10502	Signal peptidase, peptidase S26 
BF35_RS25845	PF00293	NUDIX domain
BF35_RS25865	PF08713	DNA alkylation repair enzyme
BF35_RS25875	PF00324	Amino acid permease
BF35_RS25885	PF01925	Sulfite exporter TauE/SafE
BF35_RS25915	PF13031	Protein of unknown function (DUF3892)
BF35_RS25920	PF02639	Uncharacterized BCR, YaiI/YqxD family COG1671
BF35_RS25935	PF02463	RecF/RecN/SMC N terminal domain
BF35_RS25940	PF00392	Bacterial regulatory proteins, gntR family
BF35_RS25940	PF00155	Aminotransferase class I and II
BF35_RS25945	PF00892	EamA-like transporter family
BF35_RS25960	PF00583	Acetyltransferase (GNAT) family
BF35_RS25965	PF12833	Helix-turn-helix domain
BF35_RS25990	PF00005	ABC transporter
BF35_RS26000	PF05406	WGR domain
BF35_RS26005	PF00293	NUDIX domain
BF35_RS26015	PF03764	Elongation factor G, domain IV
BF35_RS26015	PF00679	Elongation factor G C-terminus
BF35_RS26015	PF00009	Elongation factor Tu GTP binding domain
BF35_RS26025	PF01047	MarR family
BF35_RS26030	PF00881	Nitroreductase family
BF35_RS26040	PF01022	Bacterial regulatory protein, arsR family
BF35_RS26050	PF00916	Sulfate permease family
BF35_RS26050	PF01740	STAS domain
BF35_RS26055	PF03831	PhnA domain
BF35_RS26055	PF08274	PhnA Zinc-Ribbon 
BF35_RS26060	PF17863	AAA lid domain
BF35_RS26060	PF07726	ATPase family associated with various cellular activities (AAA)
BF35_RS26080	PF00144	Beta-lactamase
BF35_RS26085	PF13382	Adenine deaminase C-terminal domain
BF35_RS26085	PF01979	Amidohydrolase family
BF35_RS26095	PF06628	Catalase-related immune-responsive
BF35_RS26095	PF00199	Catalase
BF35_RS26100	PF00202	Aminotransferase class-III
BF35_RS26110	PF00535	Glycosyl transferase family 2
BF35_RS26120	PF00535	Glycosyl transferase family 2
BF35_RS26130	PF00535	Glycosyl transferase family 2
BF35_RS26140	PF07690	Major Facilitator Superfamily
BF35_RS26155	PF17863	AAA lid domain
BF35_RS26155	PF07726	ATPase family associated with various cellular activities (AAA)
BF35_RS26175	PF12681	Glyoxalase-like domain
BF35_RS26180	PF13302	Acetyltransferase (GNAT) domain
BF35_RS26195	PF04397	LytTr DNA-binding domain
BF35_RS26195	PF00072	Response regulator receiver domain
BF35_RS26205	PF10086	YhfC intramembrane metalloprotease
BF35_RS26220	PF13443	Cro/C1-type HTH DNA-binding domain
BF35_RS26225	PF11188	Protein of unknown function (DUF2975)
BF35_RS26230	PF00245	Alkaline phosphatase
BF35_RS26235	PF05547	Immune inhibitor A peptidase M6
BF35_RS26240	PF00487	Fatty acid desaturase
BF35_RS26245	PF01139	tRNA-splicing ligase RtcB
BF35_RS26250	PF00324	Amino acid permease
BF35_RS26255	PF01614	Bacterial transcriptional regulator
BF35_RS26255	PF09339	IclR helix-turn-helix domain
BF35_RS26260	PF01546	Peptidase family M20/M25/M40
BF35_RS26265	PF03807	NADP oxidoreductase coenzyme F420-dependent
BF35_RS26265	PF14748	Pyrroline-5-carboxylate reductase dimerisation
BF35_RS26270	PF01472	PUA domain
BF35_RS26270	PF00696	Amino acid kinase family
BF35_RS26275	PF00171	Aldehyde dehydrogenase family
BF35_RS26280	PF07662	Na+ dependent nucleoside transporter C-terminus
BF35_RS26280	PF01773	Na+ dependent nucleoside transporter N-terminus
BF35_RS26300	PF03992	Antibiotic biosynthesis monooxygenase
BF35_RS26325	PF01791	DeoC/LacD family aldolase
BF35_RS26335	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
BF35_RS26335	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
BF35_RS26340	PF00325	Bacterial regulatory proteins, crp family
BF35_RS26340	PF04198	Putative sugar-binding domain
BF35_RS26345	PF00005	ABC transporter
BF35_RS26350	PF02653	Branched-chain amino acid transport system / permease component
BF35_RS26355	PF02653	Branched-chain amino acid transport system / permease component
BF35_RS26360	PF13407	Periplasmic binding protein domain
BF35_RS26365	PF06039	Malate:quinone oxidoreductase (Mqo)
BF35_RS26385	PF06725	3D domain
BF35_RS26385	PF01476	LysM domain
BF35_RS26395	PF01636	Phosphotransferase enzyme family
BF35_RS26415	PF00793	DAHP synthetase I family
BF35_RS26415	PF01817	Chorismate mutase type II
BF35_RS26420	PF01264	Chorismate synthase
BF35_RS26425	PF00155	Aminotransferase class I and II
BF35_RS26430	PF01842	ACT domain
BF35_RS26430	PF02153	Prephenate dehydrogenase
BF35_RS26435	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
BF35_RS26445	PF16295	Tetracyclin repressor-like, C-terminal domain
BF35_RS26445	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS26450	PF03176	MMPL family
BF35_RS26460	PF12848	ABC transporter
BF35_RS26460	PF00005	ABC transporter
BF35_RS26465	PF00884	Sulfatase
BF35_RS26470	PF03741	Integral membrane protein TerC family
BF35_RS26475	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BF35_RS26485	PF03611	PTS system sugar-specific permease component
BF35_RS26495	PF01522	Polysaccharide deacetylase
BF35_RS26500	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BF35_RS26530	PF12867	DinB superfamily
BF35_RS26535	PF13536	Putative multidrug resistance efflux transporter
BF35_RS26555	PF02522	Aminoglycoside 3-N-acetyltransferase
BF35_RS26575	PF09297	NADH pyrophosphatase zinc ribbon domain
BF35_RS26575	PF00293	NUDIX domain
BF35_RS26585	PF00005	ABC transporter
BF35_RS26590	PF09084	NMT1/THI5 like
BF35_RS26595	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS26600	PF00296	Luciferase-like monooxygenase
BF35_RS26615	PF01594	AI-2E family transporter
BF35_RS26670	PF00005	ABC transporter
BF35_RS26690	PF03630	Fumble 
BF35_RS26695	PF07977	FabA-like domain
BF35_RS26700	PF00155	Aminotransferase class I and II
BF35_RS26735	PF08241	Methyltransferase domain
BF35_RS26750	PF04226	Transglycosylase associated protein
BF35_RS26770	PF07690	Major Facilitator Superfamily
BF35_RS26775	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS26775	PF12793	Sugar transport-related sRNA regulator N-term
BF35_RS26780	PF13171	Protein of unknown function (DUF4004)
BF35_RS26785	PF04519	Polymer-forming cytoskeletal
BF35_RS26795	PF07690	Major Facilitator Superfamily
BF35_RS26835	PF07552	Spore Coat Protein X and V domain
BF35_RS26840	PF02645	Uncharacterised protein, DegV family COG1307
BF35_RS26845	PF08439	Oligopeptidase F
BF35_RS26845	PF01432	Peptidase family M3
BF35_RS26850	PF03808	Glycosyl transferase WecB/TagA/CpsF family
BF35_RS26860	PF01048	Phosphorylase superfamily
BF35_RS26880	PF00486	Transcriptional regulatory protein, C terminal
BF35_RS26880	PF00072	Response regulator receiver domain
BF35_RS26885	PF00512	His Kinase A (phospho-acceptor) domain
BF35_RS26885	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BF35_RS26885	PF00672	HAMP domain
BF35_RS26890	PF08530	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BF35_RS26890	PF02129	X-Pro dipeptidyl-peptidase (S15 family)
BF35_RS26920	PF01965	DJ-1/PfpI family
BF35_RS26935	PF13378	Enolase C-terminal domain-like
BF35_RS26935	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
BF35_RS26940	PF00877	NlpC/P60 family
BF35_RS26940	PF18348	Bacterial dipeptidyl-peptidase Sh3 domain
BF35_RS26945	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BF35_RS26965	PF04914	DltD protein
BF35_RS26980	PF09335	SNARE associated Golgi protein
BF35_RS26985	PF08876	Domain of unknown function (DUF1836)
BF35_RS27005	PF04324	BFD-like [2Fe-2S] binding domain
BF35_RS27005	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS27020	PF13188	PAS domain
BF35_RS27020	PF02954	Bacterial regulatory protein, Fis family
BF35_RS27020	PF00158	Sigma-54 interaction domain
BF35_RS27025	PF01266	FAD dependent oxidoreductase
BF35_RS27030	PF05544	Proline racemase
BF35_RS27035	PF05544	Proline racemase
BF35_RS27040	PF00701	Dihydrodipicolinate synthetase family
BF35_RS27045	PF00171	Aldehyde dehydrogenase family
BF35_RS27050	PF01235	Sodium:alanine symporter family
BF35_RS27055	PF02627	Carboxymuconolactone decarboxylase family
BF35_RS27070	PF18416	N-acetylglucosamine binding protein domain 2
BF35_RS27070	PF03067	Lytic polysaccharide mono-oxygenase, cellulose-degrading
BF35_RS27075	PF02833	DHHA2 domain
BF35_RS27075	PF01368	DHH family
BF35_RS27130	PF00270	DEAD/DEAH box helicase
BF35_RS27130	PF00271	Helicase conserved C-terminal domain
BF35_RS27130	PF00570	HRDC domain
BF35_RS27130	PF16124	RecQ zinc-binding
BF35_RS27130	PF09382	RQC domain
BF35_RS27135	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like
BF35_RS27150	PF13538	UvrD-like helicase C-terminal domain
BF35_RS27200	PF13333	Integrase core domain
BF35_RS27200	PF13276	HTH-like domain
BF35_RS27200	PF00665	Integrase core domain
BF35_RS27210	PF13567	Domain of unknown function (DUF4131)
BF35_RS27210	PF03772	Competence protein
BF35_RS27210	PF00753	Metallo-beta-lactamase superfamily
BF35_RS27220	PF04237	YjbR
BF35_RS27225	PF08241	Methyltransferase domain
BF35_RS27230	PF10990	Protein of unknown function (DUF2809)
BF35_RS27245	PF03781	Sulfatase-modifying factor enzyme 1
BF35_RS27250	PF00201	UDP-glucoronosyl and UDP-glucosyl transferase
BF35_RS27255	PF03067	Lytic polysaccharide mono-oxygenase, cellulose-degrading
BF35_RS27255	PF18416	N-acetylglucosamine binding protein domain 2
BF35_RS27260	PF13673	Acetyltransferase (GNAT) domain
BF35_RS27265	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
BF35_RS27280	PF00574	Clp protease
BF35_RS27285	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
BF35_RS27290	PF00005	ABC transporter
BF35_RS27290	PF00571	CBS domain
BF35_RS27295	PF00528	Binding-protein-dependent transport system inner membrane component
BF35_RS27335	PF13673	Acetyltransferase (GNAT) domain
BF35_RS27335	PF04229	GrpB protein
BF35_RS27340	PF00106	short chain dehydrogenase
BF35_RS27350	PF00676	Dehydrogenase E1 component
BF35_RS27355	PF02780	Transketolase, C-terminal domain
BF35_RS27355	PF02779	Transketolase, pyrimidine binding domain
BF35_RS27360	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
BF35_RS27360	PF00364	Biotin-requiring enzyme
BF35_RS27360	PF02817	e3 binding domain
BF35_RS27365	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
BF35_RS27365	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BF35_RS27385	PF08220	DeoR-like helix-turn-helix domain
BF35_RS27385	PF00455	DeoR C terminal sensor domain
BF35_RS27390	PF13302	Acetyltransferase (GNAT) domain
BF35_RS27405	PF02954	Bacterial regulatory protein, Fis family
BF35_RS27405	PF01590	GAF domain
BF35_RS27405	PF00158	Sigma-54 interaction domain
BF35_RS27425	PF08359	YsiA-like protein, C-terminal region
BF35_RS27425	PF00440	Bacterial regulatory proteins, tetR family
BF35_RS27430	PF00266	Aminotransferase class-V
BF35_RS27435	PF04199	Putative cyclase
BF35_RS27440	PF03301	Tryptophan 2,3-dioxygenase
BF35_RS27460	PF01471	Putative peptidoglycan binding domain
BF35_RS27460	PF07486	Cell Wall Hydrolase
BF35_RS27465	PF03413	Peptidase propeptide and YPEB domain
BF35_RS27465	PF14620	YpeB sporulation
BF35_RS27470	PF09580	Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
BF35_RS27485	PF06081	Aromatic acid exporter family member 1
BF35_RS27525	PF02733	Dak1 domain
