locus-tag	class	description
JM955_RS00010	COG0592	DNA-directed DNA polymerase activity
JM955_RS00015	COG2501	S4 domain
JM955_RS00025	COG0187	DNA topoisomerase II activity
JM955_RS00030	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JM955_RS00065	COG0517	IMP dehydrogenase activity
JM955_RS00065	COG0516	GMP reductase activity
JM955_RS00070	COG1686	Belongs to the peptidase S11 family
JM955_RS00100	COG1428	Deoxynucleoside kinase
JM955_RS00105	COG1428	Deoxynucleoside kinase
JM955_RS00110	COG1335	isochorismatase
JM955_RS00115	COG0590	tRNA wobble adenosine to inosine editing
JM955_RS00125	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JM955_RS00180	COG1982	Orn Lys Arg decarboxylase major
JM955_RS00190	COG0470	DNA polymerase III
JM955_RS00195	COG1774	PSP1 C-terminal conserved region
JM955_RS00205	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JM955_RS00215	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JM955_RS00220	COG2002	toxin-antitoxin pair type II binding
JM955_RS00230	COG0084	hydrolase, TatD family'
JM955_RS00250	COG4466	Protein conserved in bacteria
JM955_RS00265	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JM955_RS00270	COG0251	oxidation-reduction process
JM955_RS00300	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JM955_RS00305	COG2002	toxin-antitoxin pair type II binding
JM955_RS00310	COG2244	polysaccharide biosynthetic process
JM955_RS00315	COG3956	TIGRFAM MazG family protein
JM955_RS00320	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JM955_RS00340	COG1098	S1 RNA binding domain
JM955_RS00355	COG2208	phosphoserine phosphatase activity
JM955_RS00365	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JM955_RS00370	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JM955_RS00385	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JM955_RS00390	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JM955_RS00395	COG0512	Glutamine amidotransferase of anthranilate synthase
JM955_RS00400	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JM955_RS00405	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JM955_RS00410	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JM955_RS00415	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JM955_RS00420	COG1396	sequence-specific DNA binding
JM955_RS00425	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JM955_RS00515	COG3880	PFAM UvrB UvrC protein
JM955_RS00525	COG0542	response to heat
JM955_RS00530	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JM955_RS00540	COG4956	integral membrane protein (PIN domain superfamily)
JM955_RS00560	COG1045	serine acetyltransferase
JM955_RS00575	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JM955_RS00580	COG3688	RNA-binding protein containing a PIN domain
JM955_RS00595	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JM955_RS00600	COG0250	Participates in transcription elongation, termination and antitermination
JM955_RS00605	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JM955_RS00620	COG0222	ribosome binding
JM955_RS00625	COG2813	Specifically methylates the guanine in position
JM955_RS00635	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JM955_RS00640	COG1358	cellular component organization or biogenesis
JM955_RS00645	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JM955_RS00665	COG0051	transcription antitermination factor activity, RNA binding
JM955_RS00670	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JM955_RS00710	COG0255	Belongs to the universal ribosomal protein uL29 family
JM955_RS00770	COG0201	protein transport
JM955_RS00780	COG0024	Methionine aminopeptidase
JM955_RS00790	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JM955_RS00825	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JM955_RS00850	COG0860	N-Acetylmuramoyl-L-alanine amidase
JM955_RS00855	COG0489	protein tyrosine kinase activity
JM955_RS00865	COG2194	sulfuric ester hydrolase activity
JM955_RS00870	COG0726	polysaccharide deacetylase
JM955_RS00950	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
JM955_RS00955	COG4856	YbbR-like protein
JM955_RS00990	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS00995	COG2011	ABC-type metal ion transport system permease component
JM955_RS01000	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JM955_RS01005	COG1464	Belongs to the NlpA lipoprotein family
JM955_RS01010	COG0604	alcohol dehydrogenase
JM955_RS01020	COG0277	FAD linked oxidase domain protein
JM955_RS01025	COG2271	Major facilitator Superfamily
JM955_RS01035	COG2814	Major facilitator Superfamily
JM955_RS01055	COG0601	transmembrane transport
JM955_RS01060	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JM955_RS01065	COG0444	Belongs to the ABC transporter superfamily
JM955_RS01070	COG4608	Belongs to the ABC transporter superfamily
JM955_RS01075	COG4166	transmembrane transport
JM955_RS01090	COG4166	transmembrane transport
JM955_RS01095	COG4166	transmembrane transport
JM955_RS01100	COG0656	L-ascorbic acid biosynthetic process
JM955_RS01120	COG4149	molybdate abc transporter
JM955_RS01125	COG0725	ABC transporter, periplasmic molybdate-binding protein
JM955_RS01130	COG1910	domain protein
JM955_RS01145	COG0697	spore germination
JM955_RS01160	COG0204	Acyl-transferase
JM955_RS01170	COG1609	Transcriptional regulator
JM955_RS01180	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM955_RS01195	COG5298	Protein conserved in bacteria
JM955_RS01215	COG0488	(ABC) transporter
JM955_RS01225	COG0747	negative chemotaxis
JM955_RS01230	COG0601	transmembrane transport
JM955_RS01235	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JM955_RS01240	COG0444	Belongs to the ABC transporter superfamily
JM955_RS01245	COG4608	Belongs to the ABC transporter superfamily
JM955_RS01250	COG0561	phosphatase activity
JM955_RS01280	COG3185	4-Hydroxyphenylpyruvate dioxygenase
JM955_RS01285	COG0179	Fumarylacetoacetate (FAA) hydrolase
JM955_RS01295	COG0531	amino acid
JM955_RS01300	COG2814	Major facilitator Superfamily
JM955_RS01310	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JM955_RS01320	COG4294	response to UV
JM955_RS01325	COG0705	Rhomboid family
JM955_RS01335	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JM955_RS01340	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JM955_RS01345	COG0864	Transcriptional regulator
JM955_RS01350	COG2337	Toxic component of a toxin-antitoxin (TA) module
JM955_RS01355	COG2183	response to ionizing radiation
JM955_RS01455	COG0802	atpase or kinase
JM955_RS01460	COG1214	PFAM Peptidase M22, glycoprotease
JM955_RS01465	COG0456	acetyltransferase
JM955_RS01475	COG0488	(ABC) transporter
JM955_RS01490	COG1266	CAAX protease self-immunity
JM955_RS01520	COG2252	PERMEase
JM955_RS01530	COG5002	protein histidine kinase activity
JM955_RS01555	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JM955_RS01575	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS01580	COG0506	proline dehydrogenase activity
JM955_RS01625	COG2205	protein histidine kinase activity
JM955_RS01630	COG0745	RESPONSE REGULATOR receiver
JM955_RS01650	COG0697	spore germination
JM955_RS01680	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JM955_RS01685	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JM955_RS01690	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JM955_RS01700	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JM955_RS01715	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JM955_RS01725	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JM955_RS01735	COG0151	Belongs to the GarS family
JM955_RS01745	COG0583	DNA-binding transcription factor activity
JM955_RS01770	COG0210	DNA helicase
JM955_RS01780	COG4851	CamS sex pheromone cAM373 precursor
JM955_RS01795	COG1335	isochorismatase
JM955_RS01805	COG2011	ABC-type metal ion transport system permease component
JM955_RS01810	COG1464	Belongs to the NlpA lipoprotein family
JM955_RS01825	COG0003	Pfam Anion-transporting ATPase
JM955_RS01830	COG1846	Transcriptional regulator
JM955_RS01835	COG4682	membrane
JM955_RS01855	COG1597	lipid kinase activity
JM955_RS01860	COG0546	phosphoglycolate phosphatase activity
JM955_RS01865	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JM955_RS01875	COG1012	belongs to the aldehyde dehydrogenase family
JM955_RS01880	COG2076	Multidrug Resistance protein
JM955_RS01885	COG2309	aminopeptidase activity
JM955_RS01905	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM955_RS01915	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JM955_RS01920	COG4807	Protein conserved in bacteria
JM955_RS01945	COG1757	Na H antiporter
JM955_RS01950	COG1473	amidohydrolase
JM955_RS01970	COG0450	alkyl hydroperoxide reductase
JM955_RS01990	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM955_RS01995	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM955_RS02000	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM955_RS02005	COG0492	ferredoxin-NADP+ reductase activity
JM955_RS02015	COG0166	Belongs to the GPI family
JM955_RS02040	COG5002	protein histidine kinase activity
JM955_RS02060	COG3541	Predicted nucleotidyltransferase
JM955_RS02065	COG2814	Major facilitator Superfamily
JM955_RS02070	COG0723	plastoquinol--plastocyanin reductase activity
JM955_RS02070	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JM955_RS02080	COG0765	amino acid transport
JM955_RS02085	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JM955_RS02095	COG0840	transmembrane signaling receptor activity
JM955_RS02120	COG0549	Belongs to the carbamate kinase family
JM955_RS02125	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JM955_RS02135	COG0277	FAD linked oxidase domain protein
JM955_RS02140	COG0366	Alpha amylase catalytic
JM955_RS02145	COG2190	(PTS) system
JM955_RS02145	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM955_RS02145	COG1263	PTS System
JM955_RS02175	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JM955_RS02195	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JM955_RS02200	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JM955_RS02205	COG1116	anion transmembrane transporter activity
JM955_RS02210	COG0488	(ABC) transporter
JM955_RS02255	COG2270	Major facilitator Superfamily
JM955_RS02290	COG2310	stress, protein
JM955_RS02295	COG2310	stress, protein
JM955_RS02300	COG2310	stress, protein
JM955_RS02305	COG0861	Integral membrane protein TerC family
JM955_RS02315	COG3853	Toxic anion resistance protein (TelA)
JM955_RS02330	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JM955_RS02340	COG1295	ribonuclease BN
JM955_RS02345	COG2217	Heavy metal translocating P-type atpase
JM955_RS02350	COG0697	spore germination
JM955_RS02370	COG0586	Pfam SNARE associated Golgi protein
JM955_RS02385	COG3871	stress protein (general stress protein 26)
JM955_RS02390	COG0387	Pfam Sodium calcium exchanger
JM955_RS02400	COG0535	radical SAM domain protein
JM955_RS02420	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JM955_RS02425	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JM955_RS02440	COG3829	transcription factor binding
JM955_RS02450	COG0833	amino acid
JM955_RS02455	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JM955_RS02480	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM955_RS02480	COG1263	PTS System
JM955_RS02485	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM955_RS02500	COG1216	Glycosyl transferase, family 2
JM955_RS02510	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JM955_RS02510	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JM955_RS02515	COG0463	Glycosyl transferase, family 2
JM955_RS02530	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JM955_RS02550	COG1228	amidohydrolase
JM955_RS02555	COG1090	epimerase
JM955_RS02585	COG1988	membrane-bound metal-dependent
JM955_RS02590	COG1194	a g-specific adenine glycosylase
JM955_RS02610	COG3557	Belongs to the UPF0374 family
JM955_RS02615	COG1132	(ABC) transporter
JM955_RS02620	COG4129	membrane
JM955_RS02625	COG0070	glutamate synthase
JM955_RS02625	COG0067	glutamate synthase
JM955_RS02625	COG0069	glutamate synthase activity
JM955_RS02635	COG4555	ABC transporter
JM955_RS02655	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JM955_RS02660	COG0735	belongs to the Fur family
JM955_RS02780	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JM955_RS02805	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JM955_RS02810	COG1716	ATPase activity
JM955_RS02810	COG5001	Diguanylate cyclase
JM955_RS02815	COG2766	serine protein kinase
JM955_RS02855	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS02855	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JM955_RS02855	COG3321	synthase
JM955_RS02855	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JM955_RS02855	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JM955_RS02860	COG3321	synthase
JM955_RS02860	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS02860	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JM955_RS02860	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JM955_RS02860	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JM955_RS02925	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JM955_RS02935	COG1585	Membrane protein implicated in regulation of membrane protease activity
JM955_RS02940	COG2268	Band 7 protein
JM955_RS02950	COG3290	protein histidine kinase activity
JM955_RS02955	COG4565	transcriptional regulatory protein
JM955_RS02960	COG2851	Citrate transporter
JM955_RS02985	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JM955_RS02990	COG3842	ATPase activity
JM955_RS02995	COG1175	transmembrane transport
JM955_RS03000	COG0395	ABC-type sugar transport system, permease component
JM955_RS03010	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JM955_RS03015	COG0745	RESPONSE REGULATOR receiver
JM955_RS03020	COG5002	protein histidine kinase activity
JM955_RS03030	COG4990	cell redox homeostasis
JM955_RS03040	COG3290	protein histidine kinase activity
JM955_RS03045	COG4565	transcriptional regulatory protein
JM955_RS03050	COG3493	citrate carrier protein
JM955_RS03055	COG0281	malic enzyme
JM955_RS03065	COG0697	spore germination
JM955_RS03070	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS03080	COG5002	protein histidine kinase activity
JM955_RS03085	COG0745	RESPONSE REGULATOR receiver
JM955_RS03090	COG0456	acetyltransferase
JM955_RS03090	COG0454	-acetyltransferase
JM955_RS03095	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JM955_RS03100	COG3383	formate dehydrogenase (NAD+) activity
JM955_RS03105	COG2427	Protein of unknown function (DUF1641)
JM955_RS03120	COG0531	amino acid
JM955_RS03130	COG0640	Transcriptional regulator
JM955_RS03135	COG2217	Heavy metal translocating P-type atpase
JM955_RS03140	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JM955_RS03155	COG3227	Zinc metalloprotease (Elastase)
JM955_RS03175	COG2720	vancomycin resistance protein
JM955_RS03180	COG1316	TRANSCRIPTIONal
JM955_RS03185	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM955_RS03190	COG0346	lactoylglutathione lyase activity
JM955_RS03195	COG1253	flavin adenine dinucleotide binding
JM955_RS03200	COG1027	Aspartate ammonia-lyase
JM955_RS03205	COG1620	l-lactate permease
JM955_RS03220	COG3104	oligopeptide transport
JM955_RS03225	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM955_RS03230	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM955_RS03235	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM955_RS03250	COG0156	8-amino-7-oxononanoate synthase activity
JM955_RS03255	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JM955_RS03260	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JM955_RS03270	COG4548	von Willebrand factor, type A
JM955_RS03275	COG0714	Associated with various cellular activities
JM955_RS03295	COG0531	amino acid
JM955_RS03300	COG2188	Transcriptional regulator
JM955_RS03305	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM955_RS03305	COG1263	PTS System
JM955_RS03310	COG0366	Alpha amylase catalytic
JM955_RS03325	COG0697	spore germination
JM955_RS03335	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JM955_RS03340	COG1115	amino acid carrier protein
JM955_RS03345	COG1126	abc transporter atp-binding protein
JM955_RS03350	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JM955_RS03355	COG0765	amino acid transport
JM955_RS03360	COG0765	amino acid transport
JM955_RS03365	COG0833	amino acid
JM955_RS03380	COG1595	DNA-templated transcription, initiation
JM955_RS03390	COG2378	regulation of single-species biofilm formation
JM955_RS03395	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JM955_RS03400	COG5002	protein histidine kinase activity
JM955_RS03425	COG0659	secondary active sulfate transmembrane transporter activity
JM955_RS03440	COG0747	negative chemotaxis
JM955_RS03450	COG0601	transmembrane transport
JM955_RS03455	COG4608	Belongs to the ABC transporter superfamily
JM955_RS03465	COG2271	Major facilitator Superfamily
JM955_RS03470	COG1846	Transcriptional regulator
JM955_RS03475	COG0477	Major facilitator Superfamily
JM955_RS03480	COG1609	Transcriptional regulator
JM955_RS03485	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JM955_RS03500	COG1172	Belongs to the binding-protein-dependent transport system permease family
JM955_RS03505	COG1879	ABC-type sugar transport system periplasmic component
JM955_RS03530	COG1063	alcohol dehydrogenase
JM955_RS03580	COG0840	transmembrane signaling receptor activity
JM955_RS03585	COG3584	3D domain protein
JM955_RS03585	COG1388	LysM domain
JM955_RS03590	COG1476	TRANSCRIPTIONal
JM955_RS03610	COG3104	oligopeptide transport
JM955_RS03615	COG1114	Component of the transport system for branched-chain amino acids
JM955_RS03630	COG1113	amino acid transport
JM955_RS03635	COG2252	PERMEase
JM955_RS03650	COG2153	protein acetylation
JM955_RS03660	COG0475	glutathione-regulated potassium exporter activity
JM955_RS03660	COG0569	domain protein
JM955_RS03670	COG1845	cytochrome c oxidase, subunit III
JM955_RS03675	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JM955_RS03685	COG0833	amino acid
JM955_RS03690	COG4990	cell redox homeostasis
JM955_RS03705	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JM955_RS03710	COG0697	spore germination
JM955_RS03715	COG0531	amino acid
JM955_RS03730	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JM955_RS03735	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JM955_RS03740	COG1918	ferrous iron import across plasma membrane
JM955_RS03740	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JM955_RS03745	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JM955_RS03750	COG0573	inorganic phosphate transmembrane transporter activity
JM955_RS03755	COG0581	inorganic phosphate transmembrane transporter activity
JM955_RS03765	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JM955_RS03885	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
JM955_RS03905	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JM955_RS03910	COG1116	anion transmembrane transporter activity
JM955_RS03915	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JM955_RS03920	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JM955_RS03925	COG0352	thiamine-phosphate diphosphorylase activity
JM955_RS03930	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JM955_RS03935	COG2104	thiamine diphosphate biosynthetic process
JM955_RS03945	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JM955_RS03950	COG0351	phosphomethylpyrimidine kinase
JM955_RS03990	COG2205	protein histidine kinase activity
JM955_RS03995	COG2814	Major facilitator Superfamily
JM955_RS04000	COG1846	Transcriptional regulator
JM955_RS04020	COG2252	PERMEase
JM955_RS04025	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS04085	COG0778	Nitroreductase
JM955_RS04090	COG2719	SpoVR family
JM955_RS04100	COG1414	Transcriptional regulator
JM955_RS04115	COG0446	pyridine nucleotide-disulphide oxidoreductase
JM955_RS04120	COG1937	Protein conserved in bacteria
JM955_RS04125	COG0425	Belongs to the sulfur carrier protein TusA family
JM955_RS04125	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM955_RS04130	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS04130	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM955_RS04135	COG0425	Belongs to the sulfur carrier protein TusA family
JM955_RS04140	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM955_RS04150	COG2210	Belongs to the sulfur carrier protein TusA family
JM955_RS04155	COG0730	response to heat
JM955_RS04165	COG1316	TRANSCRIPTIONal
JM955_RS04170	COG0604	alcohol dehydrogenase
JM955_RS04175	COG1283	sodium-dependent phosphate transmembrane transporter activity
JM955_RS04190	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JM955_RS04190	COG3711	transcriptional antiterminator
JM955_RS04195	COG1447	Phosphotransferase system cellobiose-specific component IIA
JM955_RS04200	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JM955_RS04220	COG3584	3D domain protein
JM955_RS04220	COG1388	LysM domain
JM955_RS04225	COG0577	efflux transmembrane transporter activity
JM955_RS04230	COG1136	(ABC) transporter
JM955_RS04240	COG5522	Integral membrane protein (intg_mem_TP0381)
JM955_RS04255	COG1114	Component of the transport system for branched-chain amino acids
JM955_RS04260	COG3546	catalase activity
JM955_RS04295	COG0586	Pfam SNARE associated Golgi protein
JM955_RS04330	COG0531	amino acid
JM955_RS04335	COG0475	glutathione-regulated potassium exporter activity
JM955_RS04345	COG1737	Transcriptional regulator
JM955_RS04355	COG1263	PTS System
JM955_RS04355	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM955_RS04365	COG2259	Doxx family
JM955_RS04385	COG1522	sequence-specific DNA binding
JM955_RS04390	COG0165	Argininosuccinate lyase
JM955_RS04390	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JM955_RS04395	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS04415	COG1309	transcriptional regulator
JM955_RS04420	COG2814	Major facilitator Superfamily
JM955_RS04425	COG1733	regulation of RNA biosynthetic process
JM955_RS04445	COG0693	protein deglycase activity
JM955_RS04450	COG0753	catalase activity
JM955_RS04460	COG0531	amino acid
JM955_RS04475	COG1012	belongs to the aldehyde dehydrogenase family
JM955_RS04480	COG1132	(ABC) transporter
JM955_RS04485	COG1132	(ABC) transporter
JM955_RS04490	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JM955_RS04495	COG0765	amino acid transport
JM955_RS04500	COG1126	abc transporter atp-binding protein
JM955_RS04515	COG0189	ligase activity
JM955_RS04535	COG4585	Histidine kinase
JM955_RS04540	COG2197	response regulator
JM955_RS04560	COG0028	Belongs to the TPP enzyme family
JM955_RS04565	COG3527	Alpha-acetolactate decarboxylase
JM955_RS04575	COG0561	phosphatase activity
JM955_RS04585	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM955_RS04585	COG3409	Peptidoglycan-binding domain 1 protein
JM955_RS04590	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JM955_RS04595	COG0318	PFAM AMP-dependent synthetase and ligase
JM955_RS04610	COG0659	secondary active sulfate transmembrane transporter activity
JM955_RS04615	COG2244	polysaccharide biosynthetic process
JM955_RS04635	COG1024	Enoyl-CoA hydratase
JM955_RS04655	COG1363	Peptidase, m42
JM955_RS04695	COG0601	transmembrane transport
JM955_RS04700	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JM955_RS04705	COG0444	Belongs to the ABC transporter superfamily
JM955_RS04710	COG4608	Belongs to the ABC transporter superfamily
JM955_RS04755	COG0477	Major facilitator Superfamily
JM955_RS04760	COG3290	protein histidine kinase activity
JM955_RS04765	COG4565	transcriptional regulatory protein
JM955_RS04770	COG3181	Tripartite tricarboxylate transporter family receptor
JM955_RS04825	COG0305	Participates in initiation and elongation during chromosome replication
JM955_RS04855	COG0477	Major facilitator Superfamily
JM955_RS04870	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS04890	COG5504	Zn-dependent protease
JM955_RS04895	COG0789	Transcriptional regulator
JM955_RS04930	COG1329	Transcriptional regulator
JM955_RS04945	COG1278	Cold shock
JM955_RS04960	COG1131	(ABC) transporter
JM955_RS04985	COG3266	domain, Protein
JM955_RS04985	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
JM955_RS04985	COG4932	domain protein
JM955_RS05055	COG1183	phosphatidylcholine synthase activity
JM955_RS05070	COG2814	Major facilitator Superfamily
JM955_RS05075	COG0640	Transcriptional regulator
JM955_RS05085	COG2376	Dihydroxyacetone kinase
JM955_RS05095	COG2376	Dihydroxyacetone kinase
JM955_RS05135	COG0457	Tetratricopeptide repeat
JM955_RS05145	COG2373	Large extracellular alpha-helical protein
JM955_RS05195	COG3237	CsbD-like
JM955_RS05220	COG1191	sigma factor activity
JM955_RS05230	COG2208	phosphoserine phosphatase activity
JM955_RS05235	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JM955_RS05240	COG2198	Histidine kinase
JM955_RS05240	COG0784	Response regulator, receiver
JM955_RS05240	COG2205	protein histidine kinase activity
JM955_RS05285	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JM955_RS05305	COG0420	3'-5' exonuclease activity
JM955_RS05310	COG4717	serine-type aminopeptidase activity
JM955_RS05325	COG1280	lysine exporter protein (LysE YggA)
JM955_RS05330	COG0346	lactoylglutathione lyase activity
JM955_RS05335	COG0346	lactoylglutathione lyase activity
JM955_RS05340	COG0457	Tetratricopeptide repeat
JM955_RS05350	COG2267	carboxylic ester hydrolase activity
JM955_RS05365	COG2140	Oxalate decarboxylase
JM955_RS05370	COG3620	sequence-specific DNA binding
JM955_RS05380	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JM955_RS05385	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JM955_RS05395	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JM955_RS05415	COG0772	Belongs to the SEDS family
JM955_RS05420	COG3973	AAA domain
JM955_RS05445	COG4980	gas vesicle protein
JM955_RS05450	COG0537	adenosine 5'-monophosphoramidase activity
JM955_RS05455	COG1131	(ABC) transporter
JM955_RS05460	COG4473	ABC transporter
JM955_RS05505	COG1309	transcriptional regulator
JM955_RS05515	COG3402	PFAM membrane-flanked domain
JM955_RS05520	COG3428	Bacterial PH domain
JM955_RS05565	COG0697	spore germination
JM955_RS05570	COG3402	PFAM membrane-flanked domain
JM955_RS05575	COG3428	Bacterial PH domain
JM955_RS05580	COG2329	Antibiotic biosynthesis monooxygenase
JM955_RS05585	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JM955_RS05600	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JM955_RS05635	COG1309	transcriptional regulator
JM955_RS05640	COG1511	domain protein
JM955_RS05660	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS05665	COG1609	Transcriptional regulator
JM955_RS05675	COG1234	tRNA 3'-trailer cleavage
JM955_RS05680	COG0095	Lipoate-protein ligase
JM955_RS05690	COG0318	PFAM AMP-dependent synthetase and ligase
JM955_RS05700	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JM955_RS05710	COG4208	sulfate ABC transporter
JM955_RS05730	COG1408	metallophosphoesterase
JM955_RS05735	COG1078	dGTPase activity
JM955_RS05745	COG1595	DNA-templated transcription, initiation
JM955_RS05750	COG2207	Transcriptional regulator
JM955_RS05750	COG3708	Transcriptional regulator
JM955_RS05760	COG2205	protein histidine kinase activity
JM955_RS05765	COG0745	RESPONSE REGULATOR receiver
JM955_RS05785	COG0501	Belongs to the peptidase M48B family
JM955_RS05790	COG0840	transmembrane signaling receptor activity
JM955_RS05800	COG3693	PFAM glycoside hydrolase, family 10
JM955_RS05810	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JM955_RS05815	COG2224	Isocitrate lyase
JM955_RS05830	COG1278	Cold shock
JM955_RS05850	COG0398	Pfam SNARE associated Golgi protein
JM955_RS05870	COG0202	RNA polymerase activity
JM955_RS05910	COG0179	Fumarylacetoacetate (FAA) hydrolase
JM955_RS05935	COG0367	asparagine synthase
JM955_RS05945	COG0753	catalase activity
JM955_RS05950	COG0004	ammonium transporteR
JM955_RS05970	COG2996	Protein conserved in bacteria
JM955_RS05985	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM955_RS06000	COG0561	phosphatase activity
JM955_RS06020	COG2267	carboxylic ester hydrolase activity
JM955_RS06035	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JM955_RS06040	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JM955_RS06045	COG5504	Zn-dependent protease
JM955_RS06055	COG0180	Tryptophanyl-tRNA synthetase
JM955_RS06065	COG4166	transmembrane transport
JM955_RS06070	COG0601	transmembrane transport
JM955_RS06075	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JM955_RS06080	COG0444	Belongs to the ABC transporter superfamily
JM955_RS06085	COG4608	Belongs to the ABC transporter superfamily
JM955_RS06090	COG0534	Mate efflux family protein
JM955_RS06095	COG4166	transmembrane transport
JM955_RS06110	COG0861	Integral membrane protein TerC family
JM955_RS06120	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JM955_RS06130	COG1164	Oligoendopeptidase f
JM955_RS06145	COG2346	COG2346, Truncated hemoglobins
JM955_RS06150	COG4116	CYTH
JM955_RS06160	COG2357	RelA SpoT domain protein
JM955_RS06170	COG0564	pseudouridine synthase activity
JM955_RS06185	COG0772	Belongs to the SEDS family
JM955_RS06190	COG1216	Glycosyl transferase, family 2
JM955_RS06210	COG0463	Glycosyl transferase, family 2
JM955_RS06210	COG0457	Tetratricopeptide repeat
JM955_RS06230	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JM955_RS06245	COG1091	dTDP-4-dehydrorhamnose reductase activity
JM955_RS06290	COG2153	protein acetylation
JM955_RS06300	COG2382	esterase
JM955_RS06330	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JM955_RS06340	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JM955_RS06340	COG0512	Glutamine amidotransferase of anthranilate synthase
JM955_RS06385	COG1620	l-lactate permease
JM955_RS06395	COG5634	Uncharacterized conserved protein (DUF2278)
JM955_RS06445	COG2226	methyltransferase
JM955_RS06465	COG0508	dehydrogenase complex catalyzes the overall conversion of
JM955_RS06475	COG1476	TRANSCRIPTIONal
JM955_RS06540	COG2226	methyltransferase
JM955_RS06550	COG1686	Belongs to the peptidase S11 family
JM955_RS06555	COG0681	Belongs to the peptidase S26 family
JM955_RS06590	COG1012	belongs to the aldehyde dehydrogenase family
JM955_RS06600	COG1176	ABC-type spermidine putrescine transport system, permease component I
JM955_RS06605	COG1177	transmembrane transport
JM955_RS06620	COG2409	Drug exporters of the RND superfamily
JM955_RS06630	COG0564	pseudouridine synthase activity
JM955_RS06640	COG2340	Cysteine-rich secretory protein family
JM955_RS06645	COG0247	lactate metabolic process
JM955_RS06650	COG0277	FAD linked oxidase domain protein
JM955_RS06655	COG3835	regulator
JM955_RS06665	COG0745	RESPONSE REGULATOR receiver
JM955_RS06670	COG5002	protein histidine kinase activity
JM955_RS06675	COG2186	Transcriptional regulator
JM955_RS06695	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JM955_RS06705	COG2116	formate transmembrane transporter activity
JM955_RS06710	COG0861	Integral membrane protein TerC family
JM955_RS06715	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JM955_RS06725	COG2030	dehydratase
JM955_RS06745	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS06750	COG3243	poly(R)-hydroxyalkanoic acid synthase
JM955_RS06760	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JM955_RS06775	COG1840	ABC-type Fe3 transport system, periplasmic component
JM955_RS06780	COG3842	ATPase activity
JM955_RS06805	COG1349	DNA-binding transcription factor activity
JM955_RS06815	COG0235	Class ii aldolase
JM955_RS06825	COG2861	carbohydrate metabolic process
JM955_RS06835	COG3852	Histidine kinase
JM955_RS06840	COG1846	Transcriptional regulator
JM955_RS06850	COG2318	DinB family
JM955_RS06855	COG5002	protein histidine kinase activity
JM955_RS06865	COG0720	synthase
JM955_RS06880	COG4873	Protein conserved in bacteria
JM955_RS06910	COG1780	Probably involved in ribonucleotide reductase function
JM955_RS06915	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JM955_RS06920	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JM955_RS06925	COG1725	Transcriptional regulator
JM955_RS06930	COG1131	(ABC) transporter
JM955_RS06940	COG1131	(ABC) transporter
JM955_RS06960	COG1522	sequence-specific DNA binding
JM955_RS06970	COG1335	isochorismatase
JM955_RS06980	COG1619	proteins homologs of microcin C7 resistance protein MccF
JM955_RS06985	COG2070	2-Nitropropane dioxygenase
JM955_RS06990	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JM955_RS07000	COG1696	Membrane protein involved in D-alanine export
JM955_RS07025	COG0716	FMN binding
JM955_RS07080	COG1846	Transcriptional regulator
JM955_RS07090	COG1301	dicarboxylic acid transport
JM955_RS07095	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JM955_RS07100	COG4709	membrane
JM955_RS07105	COG3874	Sporulation protein YtfJ
JM955_RS07125	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JM955_RS07130	COG0028	Belongs to the TPP enzyme family
JM955_RS07135	COG0440	acetolactate synthase activity
JM955_RS07210	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JM955_RS07225	COG1183	phosphatidylcholine synthase activity
JM955_RS07230	COG1368	sulfuric ester hydrolase activity
JM955_RS07240	COG0019	diaminopimelate decarboxylase activity
JM955_RS07260	COG0529	Catalyzes the synthesis of activated sulfate
JM955_RS07265	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JM955_RS07285	COG1648	precorrin-2 dehydrogenase activity
JM955_RS07290	COG0733	neurotransmitter:sodium symporter activity
JM955_RS07315	COG1757	Na H antiporter
JM955_RS07330	COG4758	membrane
JM955_RS07335	COG4585	Histidine kinase
JM955_RS07340	COG2197	response regulator
JM955_RS07350	COG1114	Component of the transport system for branched-chain amino acids
JM955_RS07360	COG2226	methyltransferase
JM955_RS07400	COG0730	response to heat
JM955_RS07405	COG0306	phosphate transporter
JM955_RS07410	COG1392	Phosphate transport regulator
JM955_RS07415	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JM955_RS07430	COG3852	Histidine kinase
JM955_RS07435	COG1801	Protein of unknown function DUF72
JM955_RS07445	COG0582	viral genome integration into host DNA
JM955_RS07450	COG5002	protein histidine kinase activity
JM955_RS07465	COG0392	lysyltransferase activity
JM955_RS07465	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JM955_RS07480	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JM955_RS07485	COG1686	Belongs to the peptidase S11 family
JM955_RS07490	COG2715	membrane protein required for spore maturation
JM955_RS07495	COG0700	Nucleoside recognition
JM955_RS07500	COG1187	pseudouridine synthase activity
JM955_RS07510	COG1333	cytochrome c biogenesis protein
JM955_RS07515	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JM955_RS07520	COG0745	RESPONSE REGULATOR receiver
JM955_RS07525	COG5002	protein histidine kinase activity
JM955_RS07530	COG2096	Adenosyltransferase
JM955_RS07545	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JM955_RS07550	COG1141	Ferredoxin
JM955_RS07560	COG0514	ATP-dependent DNA helicase (RecQ)
JM955_RS07565	COG1266	CAAX protease self-immunity
JM955_RS07575	COG1408	metallophosphoesterase
JM955_RS07580	COG0789	Transcriptional regulator
JM955_RS07590	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JM955_RS07610	COG0492	ferredoxin-NADP+ reductase activity
JM955_RS07615	COG0252	asparaginase activity
JM955_RS07685	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JM955_RS07700	COG0142	geranyltranstransferase activity
JM955_RS07710	COG0142	geranyltranstransferase activity
JM955_RS07735	COG0457	Tetratricopeptide repeat
JM955_RS07755	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JM955_RS07760	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JM955_RS07760	COG2010	Cytochrome c
JM955_RS07765	COG4347	Protein of unknown function (DUF1405)
JM955_RS07780	COG2738	Putative neutral zinc metallopeptidase
JM955_RS07790	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM955_RS07795	COG1694	Mazg nucleotide pyrophosphohydrolase
JM955_RS07815	COG0438	transferase activity, transferring glycosyl groups
JM955_RS07850	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JM955_RS07850	COG1199	ATP-dependent helicase activity
JM955_RS07870	COG3935	DnaD domain protein
JM955_RS07875	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JM955_RS07885	COG4499	WXG100 protein secretion system (Wss), protein YukC
JM955_RS07885	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JM955_RS07940	COG0116	Belongs to the methyltransferase superfamily
JM955_RS07950	COG1199	ATP-dependent helicase activity
JM955_RS07955	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JM955_RS07965	COG0024	Methionine aminopeptidase
JM955_RS07975	COG2233	PERMEase
JM955_RS07985	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JM955_RS07995	COG0456	acetyltransferase
JM955_RS08045	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JM955_RS08060	COG3944	biosynthesis protein
JM955_RS08070	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JM955_RS08085	COG1215	transferase activity, transferring glycosyl groups
JM955_RS08090	COG0438	transferase activity, transferring glycosyl groups
JM955_RS08125	COG0328	RNA-DNA hybrid ribonuclease activity
JM955_RS08160	COG3403	YqcI/YcgG family
JM955_RS08165	COG1280	lysine exporter protein (LysE YggA)
JM955_RS08185	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JM955_RS08190	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JM955_RS08200	COG0475	glutathione-regulated potassium exporter activity
JM955_RS08205	COG4978	Transcriptional regulator
JM955_RS08205	COG0789	Transcriptional regulator
JM955_RS08215	COG2323	membrane
JM955_RS08220	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JM955_RS08285	COG1923	regulation of RNA biosynthetic process
JM955_RS08295	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JM955_RS08300	COG1360	Flagellar Motor Protein
JM955_RS08305	COG2201	protein-glutamate methylesterase activity
JM955_RS08310	COG2198	Histidine kinase
JM955_RS08310	COG0643	Histidine kinase
JM955_RS08315	COG1776	CheC inhibitor of MCP methylation
JM955_RS08315	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JM955_RS08330	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JM955_RS08350	COG1256	bacterial-type flagellum assembly
JM955_RS08355	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JM955_RS08375	COG1815	bacterial-type flagellum-dependent cell motility
JM955_RS08380	COG1558	bacterial-type flagellum-dependent cell motility
JM955_RS08390	COG1766	The M ring may be actively involved in energy transduction
JM955_RS08395	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JM955_RS08405	COG1157	protein secretion by the type III secretion system
JM955_RS08425	COG1749	Flagellar hook protein flgE
JM955_RS08440	COG0784	Response regulator, receiver
JM955_RS08440	COG0835	chemotaxis
JM955_RS08455	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JM955_RS08460	COG0741	lytic transglycosylase activity
JM955_RS08470	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JM955_RS08475	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JM955_RS08475	COG1776	CheC inhibitor of MCP methylation
JM955_RS08485	COG1338	Plays a role in the flagellum-specific transport system
JM955_RS08490	COG1987	bacterial-type flagellum assembly
JM955_RS08500	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JM955_RS08505	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JM955_RS08510	COG1419	protein localization to endoplasmic reticulum
JM955_RS08515	COG4786	Flagellar basal body rod
JM955_RS08520	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JM955_RS08525	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JM955_RS08560	COG2329	Antibiotic biosynthesis monooxygenase
JM955_RS08585	COG0583	DNA-binding transcription factor activity
JM955_RS08590	COG3842	ATPase activity
JM955_RS08635	COG0406	alpha-ribazole phosphatase activity
JM955_RS08665	COG0367	asparagine synthase
JM955_RS08695	COG1802	Transcriptional regulator
JM955_RS08700	COG0697	spore germination
JM955_RS08710	COG0523	cobalamin synthesis protein
JM955_RS08715	COG0701	Predicted permease
JM955_RS08730	COG1757	Na H antiporter
JM955_RS08735	COG0789	Transcriptional regulator
JM955_RS08760	COG0534	Mate efflux family protein
JM955_RS08765	COG3340	Belongs to the peptidase S51 family
JM955_RS08785	COG0785	Cytochrome C biogenesis protein
JM955_RS08790	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JM955_RS08805	COG0457	Tetratricopeptide repeat
JM955_RS08825	COG2733	membrane
JM955_RS08860	COG1131	(ABC) transporter
JM955_RS08875	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JM955_RS08880	COG0528	UMP kinase activity
JM955_RS08890	COG1027	Aspartate ammonia-lyase
JM955_RS08895	COG0281	malic enzyme
JM955_RS08900	COG4191	Histidine kinase
JM955_RS08905	COG0784	Response regulator, receiver
JM955_RS08910	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JM955_RS08960	COG2814	Major facilitator Superfamily
JM955_RS08980	COG1695	Transcriptional regulator
JM955_RS08990	COG0477	Major facilitator Superfamily
JM955_RS09005	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JM955_RS09010	COG2223	nitrite transmembrane transporter activity
JM955_RS09015	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JM955_RS09035	COG0733	neurotransmitter:sodium symporter activity
JM955_RS09045	COG5566	PFAM Mor transcription activator
JM955_RS09050	COG2323	membrane
JM955_RS09070	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JM955_RS09080	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JM955_RS09085	COG0028	Belongs to the TPP enzyme family
JM955_RS09105	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JM955_RS09130	COG2814	Major facilitator Superfamily
JM955_RS09135	COG3384	dioxygenase
JM955_RS09145	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JM955_RS09150	COG3279	Response regulator of the LytR AlgR family
JM955_RS09155	COG0427	acetyl-CoA hydrolase
JM955_RS09190	COG4166	transmembrane transport
JM955_RS09230	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS09250	COG1914	H( )-stimulated, divalent metal cation uptake system
JM955_RS09265	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JM955_RS09270	COG0531	amino acid
JM955_RS09280	COG0083	homoserine kinase activity
JM955_RS09295	COG2309	aminopeptidase activity
JM955_RS09310	COG0456	acetyltransferase
JM955_RS09325	COG1309	transcriptional regulator
JM955_RS09330	COG2390	Transcriptional regulator
JM955_RS09340	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM955_RS09345	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JM955_RS09355	COG4846	Membrane protein involved in cytochrome C biogenesis
JM955_RS09375	COG0583	DNA-binding transcription factor activity
JM955_RS09390	COG0006	proline dipeptidase activity
JM955_RS09400	COG2132	Multicopper oxidase
JM955_RS09410	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JM955_RS09430	COG1114	Component of the transport system for branched-chain amino acids
JM955_RS09440	COG1276	copper resistance
JM955_RS09440	COG2372	response to copper ion
JM955_RS09445	COG4549	nuclear export factor GLE1
JM955_RS09450	COG0697	spore germination
JM955_RS09455	COG0583	DNA-binding transcription factor activity
JM955_RS09460	COG1959	2 iron, 2 sulfur cluster binding
JM955_RS09465	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JM955_RS09470	COG0778	Nitroreductase
JM955_RS09480	COG0628	permease
JM955_RS09490	COG1231	oxidoreductase activity
JM955_RS09495	COG0523	cobalamin synthesis protein
JM955_RS09505	COG0411	ABC transporter
JM955_RS09525	COG0583	DNA-binding transcription factor activity
JM955_RS09535	COG1942	4-Oxalocrotonate Tautomerase
JM955_RS09555	COG1271	oxidase subunit
JM955_RS09560	COG1294	oxidase, subunit
JM955_RS09565	COG4988	ABC transporter
JM955_RS09570	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JM955_RS09580	COG1216	Glycosyl transferase, family 2
JM955_RS09620	COG1686	Belongs to the peptidase S11 family
JM955_RS09635	COG0791	NLP P60 protein
JM955_RS09635	COG1388	LysM domain
JM955_RS09645	COG1132	(ABC) transporter
JM955_RS09650	COG0745	RESPONSE REGULATOR receiver
JM955_RS09655	COG5002	protein histidine kinase activity
JM955_RS09665	COG0300	oxidoreductase activity
JM955_RS09670	COG4122	O-methyltransferase activity
JM955_RS09700	COG0460	homoserine dehydrogenase
JM955_RS09725	COG1316	TRANSCRIPTIONal
JM955_RS09735	COG0745	RESPONSE REGULATOR receiver
JM955_RS09740	COG5002	protein histidine kinase activity
JM955_RS09755	COG1285	pathogenesis
JM955_RS09760	COG1247	-acetyltransferase
JM955_RS09780	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JM955_RS09790	COG1082	Xylose isomerase domain protein TIM barrel
JM955_RS09800	COG2814	Major facilitator Superfamily
JM955_RS09805	COG1279	arginine transmembrane transporter activity
JM955_RS09810	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS09820	COG1752	Esterase of the alpha-beta hydrolase superfamily
JM955_RS09855	COG0577	efflux transmembrane transporter activity
JM955_RS09860	COG2002	toxin-antitoxin pair type II binding
JM955_RS09865	COG1404	Belongs to the peptidase S8 family
JM955_RS09870	COG0640	Transcriptional regulator
JM955_RS09875	COG0667	Aldo Keto reductase
JM955_RS09905	COG0840	transmembrane signaling receptor activity
JM955_RS09920	COG3949	Membrane
JM955_RS09925	COG0783	Belongs to the Dps family
JM955_RS09940	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JM955_RS09950	COG1231	oxidoreductase activity
JM955_RS09955	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS09960	COG4989	oxidoreductase activity
JM955_RS09965	COG0523	cobalamin synthesis protein
JM955_RS09970	COG0456	acetyltransferase
JM955_RS09975	COG0803	Belongs to the bacterial solute-binding protein 9 family
JM955_RS09985	COG0702	epimerase
JM955_RS09995	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JM955_RS10005	COG4166	transmembrane transport
JM955_RS10030	COG5337	Spore coat protein CotH
JM955_RS10035	COG1051	belongs to the nudix hydrolase family
JM955_RS10040	COG0586	Pfam SNARE associated Golgi protein
JM955_RS10045	COG2244	polysaccharide biosynthetic process
JM955_RS10055	COG0701	Predicted permease
JM955_RS10060	COG3689	TIGRFAM TIGR03943 family protein
JM955_RS10065	COG1607	acyl-coa hydrolase
JM955_RS10075	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JM955_RS10090	COG0702	epimerase
JM955_RS10095	COG2839	Protein conserved in bacteria
JM955_RS10100	COG1253	flavin adenine dinucleotide binding
JM955_RS10115	COG1114	Component of the transport system for branched-chain amino acids
JM955_RS10120	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JM955_RS10140	COG0860	N-Acetylmuramoyl-L-alanine amidase
JM955_RS10150	COG1876	peptidase activity
JM955_RS10165	COG2211	Major facilitator Superfamily
JM955_RS10185	COG0860	N-Acetylmuramoyl-L-alanine amidase
JM955_RS10195	COG0561	phosphatase activity
JM955_RS10200	COG1846	Transcriptional regulator
JM955_RS10205	COG2814	Major facilitator Superfamily
JM955_RS10215	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JM955_RS10220	COG4106	trans-aconitate 2-methyltransferase activity
JM955_RS10235	COG1819	glycosyl
JM955_RS10240	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM955_RS10245	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS10275	COG0456	acetyltransferase
JM955_RS10325	COG3874	Sporulation protein YtfJ
JM955_RS10350	COG2226	methyltransferase
JM955_RS10370	COG1082	Xylose isomerase domain protein TIM barrel
JM955_RS10375	COG0346	lactoylglutathione lyase activity
JM955_RS10385	COG0604	alcohol dehydrogenase
JM955_RS10390	COG1595	DNA-templated transcription, initiation
JM955_RS10405	COG0426	domain, Protein
JM955_RS10405	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JM955_RS10415	COG0386	Belongs to the glutathione peroxidase family
JM955_RS10420	COG1305	Transglutaminase-like
JM955_RS10425	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
JM955_RS10430	COG0714	Associated with various cellular activities
JM955_RS10435	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JM955_RS10440	COG1140	nitrate reductase beta subunit
JM955_RS10445	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JM955_RS10450	COG2181	nitrate reductase activity
JM955_RS10455	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JM955_RS10460	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JM955_RS10465	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JM955_RS10470	COG0303	'Molybdopterin
JM955_RS10475	COG0314	molybdopterin synthase activity
JM955_RS10485	COG2223	nitrite transmembrane transporter activity
JM955_RS10500	COG1648	precorrin-2 dehydrogenase activity
JM955_RS10510	COG1587	Uroporphyrinogen-III synthase
JM955_RS10510	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JM955_RS10515	COG2146	nitrite reductase [NAD(P)H] activity
JM955_RS10520	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JM955_RS10525	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
JM955_RS10560	COG2359	stage V sporulation protein S
JM955_RS10580	COG1418	mRNA catabolic process
JM955_RS10585	COG0488	(ABC) transporter
JM955_RS10600	COG0629	single-stranded DNA binding
JM955_RS10610	COG1413	lyase activity
JM955_RS10625	COG2521	methyltransferase
JM955_RS10625	COG2136	Putative SAM-dependent methyltransferase
JM955_RS10630	COG0018	arginyl-trna synthetase
JM955_RS10670	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JM955_RS10675	COG0017	Asparaginyl-tRNA synthetase
JM955_RS10695	COG1674	ftsk spoiiie
JM955_RS10800	COG0733	neurotransmitter:sodium symporter activity
JM955_RS10825	COG2610	gluconate transmembrane transporter activity
JM955_RS10835	COG1794	racemase activity, acting on amino acids and derivatives
JM955_RS10845	COG0456	acetyltransferase
JM955_RS10855	COG3655	Transcriptional regulator
JM955_RS10860	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JM955_RS10870	COG1131	(ABC) transporter
JM955_RS10875	COG4473	ABC transporter
JM955_RS10885	COG0546	phosphoglycolate phosphatase activity
JM955_RS10900	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM955_RS10915	COG0768	penicillin binding
JM955_RS10925	COG0204	Acyl-transferase
JM955_RS10930	COG1272	protein, Hemolysin III
JM955_RS10940	COG0805	protein transport
JM955_RS10950	COG1307	EDD domain protein, DegV family
JM955_RS10960	COG1999	signal sequence binding
JM955_RS10965	COG0071	Belongs to the small heat shock protein (HSP20) family
JM955_RS10970	COG0367	asparagine synthase
JM955_RS10985	COG0860	N-Acetylmuramoyl-L-alanine amidase
JM955_RS10990	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM955_RS10995	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JM955_RS11015	COG1335	isochorismatase
JM955_RS11025	COG0668	transmembrane transport
JM955_RS11030	COG4585	Histidine kinase
JM955_RS11030	COG2203	Gaf domain
JM955_RS11035	COG2197	response regulator
JM955_RS11040	COG1737	Transcriptional regulator
JM955_RS11045	COG0384	phenazine biosynthesis protein PhzF
JM955_RS11050	COG1064	alcohol dehydrogenase
JM955_RS11065	COG1070	Carbohydrate kinase
JM955_RS11075	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JM955_RS11110	COG1125	glycine betaine transport
JM955_RS11110	COG0517	IMP dehydrogenase activity
JM955_RS11115	COG1174	glycine betaine transport
JM955_RS11150	COG1253	flavin adenine dinucleotide binding
JM955_RS11155	COG1012	belongs to the aldehyde dehydrogenase family
JM955_RS11160	COG5506	Protein of unknown function (DUF1694)
JM955_RS11175	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JM955_RS11180	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JM955_RS11185	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JM955_RS11190	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JM955_RS11195	COG0456	acetyltransferase
JM955_RS11200	COG3829	transcription factor binding
JM955_RS11205	COG1509	lysine 2,3-aminomutase activity
JM955_RS11240	COG0515	serine threonine protein kinase
JM955_RS11240	COG3064	Membrane
JM955_RS11240	COG4991	sh3 domain protein
JM955_RS11250	COG0671	phosphoesterase, PA-phosphatase related
JM955_RS11255	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JM955_RS11260	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JM955_RS11365	COG0300	oxidoreductase activity
JM955_RS11385	COG4499	WXG100 protein secretion system (Wss), protein YukC
JM955_RS11385	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JM955_RS11395	COG2814	Major facilitator Superfamily
JM955_RS11400	COG4841	protein insertion into membrane
JM955_RS11405	COG0372	Belongs to the citrate synthase family
JM955_RS11410	COG2079	MmgE PrpD family protein
JM955_RS11415	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JM955_RS11420	COG1960	acyl-CoA dehydrogenase activity
JM955_RS11425	COG2084	Dehydrogenase
JM955_RS11435	COG1280	lysine exporter protein (LysE YggA)
JM955_RS11440	COG1024	Enoyl-CoA hydratase
JM955_RS11455	COG0420	3'-5' exonuclease activity
JM955_RS11460	COG0419	ATPase involved in DNA repair
JM955_RS11480	COG2223	nitrite transmembrane transporter activity
JM955_RS11485	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS11490	COG1169	isochorismate synthase
JM955_RS11495	COG1021	2,3-dihydroxybenzoate-AMP ligase
JM955_RS11500	COG1535	isochorismatase
JM955_RS11500	COG3433	isochorismatase activity
JM955_RS11505	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JM955_RS11510	COG3251	PFAM MbtH domain protein
JM955_RS11515	COG2814	Major facilitator Superfamily
JM955_RS11530	COG0776	regulation of translation
JM955_RS11540	COG2318	DinB family
JM955_RS11550	COG1115	amino acid carrier protein
JM955_RS11570	COG1187	pseudouridine synthase activity
JM955_RS11575	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JM955_RS11580	COG1136	(ABC) transporter
JM955_RS11595	COG0028	Belongs to the TPP enzyme family
JM955_RS11630	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JM955_RS11645	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS11685	COG1247	-acetyltransferase
JM955_RS11710	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JM955_RS11720	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS11750	COG0583	DNA-binding transcription factor activity
JM955_RS11755	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JM955_RS11775	COG0583	DNA-binding transcription factor activity
JM955_RS11780	COG2258	MOSC domain
JM955_RS11795	COG1132	(ABC) transporter
JM955_RS11800	COG1132	(ABC) transporter
JM955_RS11815	COG0582	viral genome integration into host DNA
JM955_RS11840	COG1396	sequence-specific DNA binding
JM955_RS11880	COG2002	toxin-antitoxin pair type II binding
JM955_RS11925	COG0582	viral genome integration into host DNA
JM955_RS11960	COG1802	Transcriptional regulator
JM955_RS11960	COG4626	Terminase
JM955_RS11970	COG0740	serine-type endopeptidase activity
JM955_RS12040	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM955_RS12070	COG1396	sequence-specific DNA binding
JM955_RS12100	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JM955_RS12105	COG1595	DNA-templated transcription, initiation
JM955_RS12130	COG1649	PFAM Uncharacterised BCR, COG1649
JM955_RS12155	COG2971	BadF BadG BcrA BcrD
JM955_RS12165	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JM955_RS12175	COG1846	Transcriptional regulator
JM955_RS12190	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS12205	COG1309	transcriptional regulator
JM955_RS12315	COG3615	Tellurite resistance protein tehB
JM955_RS12315	COG0500	methyltransferase
JM955_RS12325	COG2226	methyltransferase
JM955_RS12330	COG3961	Belongs to the TPP enzyme family
JM955_RS12335	COG1846	Transcriptional regulator
JM955_RS12385	COG2195	Cleaves the N-terminal amino acid of tripeptides
JM955_RS12415	COG2002	toxin-antitoxin pair type II binding
JM955_RS12425	COG0730	response to heat
JM955_RS12430	COG0110	maltose O-acetyltransferase activity
JM955_RS12435	COG1686	Belongs to the peptidase S11 family
JM955_RS12450	COG2814	Major facilitator Superfamily
JM955_RS12485	COG1115	amino acid carrier protein
JM955_RS12490	COG2066	Belongs to the glutaminase family
JM955_RS12495	COG4191	Histidine kinase
JM955_RS12500	COG0784	Response regulator, receiver
JM955_RS12505	COG0697	spore germination
JM955_RS12510	COG0531	amino acid
JM955_RS12520	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JM955_RS12525	COG0531	amino acid
JM955_RS12530	COG0322	excinuclease ABC activity
JM955_RS12545	COG2207	Transcriptional regulator
JM955_RS12570	COG5002	protein histidine kinase activity
JM955_RS12615	COG0741	lytic transglycosylase activity
JM955_RS12620	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS12635	COG1396	sequence-specific DNA binding
JM955_RS12655	COG1309	transcriptional regulator
JM955_RS12660	COG0367	asparagine synthase
JM955_RS12665	COG4585	Histidine kinase
JM955_RS12675	COG1404	Belongs to the peptidase S8 family
JM955_RS12725	COG0768	penicillin binding
JM955_RS12730	COG1595	DNA-templated transcription, initiation
JM955_RS12740	COG0768	penicillin binding
JM955_RS12745	COG0768	penicillin binding
JM955_RS12755	COG1408	metallophosphoesterase
JM955_RS12765	COG1131	(ABC) transporter
JM955_RS12775	COG1309	transcriptional regulator
JM955_RS12790	COG1960	acyl-CoA dehydrogenase activity
JM955_RS12795	COG0439	Biotin carboxylase
JM955_RS12800	COG0511	ligase activity, forming carbon-carbon bonds
JM955_RS12805	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JM955_RS12810	COG1024	Enoyl-CoA hydratase
JM955_RS12815	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JM955_RS12820	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JM955_RS12855	COG1686	Belongs to the peptidase S11 family
JM955_RS12880	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JM955_RS12895	COG3227	Zinc metalloprotease (Elastase)
JM955_RS12900	COG2207	Transcriptional regulator
JM955_RS12930	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JM955_RS12940	COG2814	Major facilitator Superfamily
JM955_RS12945	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS12950	COG1733	regulation of RNA biosynthetic process
JM955_RS12995	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS13005	COG2368	4-hydroxyphenylacetate
JM955_RS13020	COG1063	alcohol dehydrogenase
JM955_RS13030	COG2323	membrane
JM955_RS13035	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JM955_RS13040	COG0693	protein deglycase activity
JM955_RS13050	COG3386	PFAM SMP-30 Gluconolaconase
JM955_RS13060	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
JM955_RS13065	COG3773	Cell wall hydrolase
JM955_RS13075	COG0745	RESPONSE REGULATOR receiver
JM955_RS13080	COG2205	protein histidine kinase activity
JM955_RS13090	COG0488	(ABC) transporter
JM955_RS13105	COG1136	(ABC) transporter
JM955_RS13110	COG0577	efflux transmembrane transporter activity
JM955_RS13130	COG0460	homoserine dehydrogenase
JM955_RS13135	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS13145	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JM955_RS13175	COG0582	viral genome integration into host DNA
JM955_RS13205	COG1396	sequence-specific DNA binding
JM955_RS13235	COG1484	DNA-dependent DNA replication
JM955_RS13255	COG2002	toxin-antitoxin pair type II binding
JM955_RS13335	COG0582	viral genome integration into host DNA
JM955_RS13365	COG5484	DNA packaging
JM955_RS13380	COG0740	serine-type endopeptidase activity
JM955_RS13500	COG2124	cytochrome p450
JM955_RS13535	COG0561	phosphatase activity
JM955_RS13540	COG5002	protein histidine kinase activity
JM955_RS13545	COG0768	penicillin binding
JM955_RS13555	COG1819	glycosyl
JM955_RS13560	COG1794	racemase activity, acting on amino acids and derivatives
JM955_RS13585	COG2205	protein histidine kinase activity
JM955_RS13640	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JM955_RS13645	COG0604	alcohol dehydrogenase
JM955_RS13650	COG0671	phosphoesterase, PA-phosphatase related
JM955_RS13655	COG0768	penicillin binding
JM955_RS13665	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM955_RS13710	COG2814	Major facilitator Superfamily
JM955_RS13725	COG0584	glycerophosphoryl diester phosphodiesterase
JM955_RS13745	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS13750	COG0697	spore germination
JM955_RS13785	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM955_RS13795	COG2223	nitrite transmembrane transporter activity
JM955_RS13810	COG0592	DNA-directed DNA polymerase activity
JM955_RS13845	COG3878	Protein conserved in bacteria
JM955_RS13865	COG4667	esterase of the alpha-beta hydrolase superfamily
JM955_RS13905	COG0322	excinuclease ABC activity
JM955_RS13945	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JM955_RS13970	COG1011	Hydrolase
JM955_RS13975	COG0745	RESPONSE REGULATOR receiver
JM955_RS13980	COG5002	protein histidine kinase activity
JM955_RS14000	COG1522	sequence-specific DNA binding
JM955_RS14015	COG1136	(ABC) transporter
JM955_RS14020	COG0577	efflux transmembrane transporter activity
JM955_RS14030	COG0657	acetylesterase activity
JM955_RS14035	COG0076	glutamate decarboxylase activity
JM955_RS14050	COG1523	belongs to the glycosyl hydrolase 13 family
JM955_RS14055	COG3227	Zinc metalloprotease (Elastase)
JM955_RS14060	COG0737	Belongs to the 5'-nucleotidase family
JM955_RS14075	COG0201	protein transport
JM955_RS14090	COG0697	spore germination
JM955_RS14095	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS14105	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JM955_RS14135	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS14150	COG2959	enzyme of heme biosynthesis
JM955_RS14190	COG1309	transcriptional regulator
JM955_RS14220	COG3284	Transcriptional regulator
JM955_RS14235	COG1349	DNA-binding transcription factor activity
JM955_RS14250	COG1959	2 iron, 2 sulfur cluster binding
JM955_RS14265	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JM955_RS14270	COG0508	dehydrogenase complex catalyzes the overall conversion of
JM955_RS14275	COG0022	dehydrogenase e1 component
JM955_RS14280	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JM955_RS14295	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS14300	COG0456	acetyltransferase
JM955_RS14300	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JM955_RS14340	COG4176	ABC-type proline glycine betaine transport system permease component
JM955_RS14345	COG0517	IMP dehydrogenase activity
JM955_RS14345	COG4175	Glycine betaine
JM955_RS14375	COG2153	protein acetylation
JM955_RS14380	COG3397	chitin binding
JM955_RS14385	COG1819	glycosyl
JM955_RS14400	COG2205	protein histidine kinase activity
JM955_RS14410	COG2315	Protein conserved in bacteria
JM955_RS14460	COG0456	acetyltransferase
JM955_RS14465	COG3973	AAA domain
JM955_RS14480	COG0514	ATP-dependent DNA helicase (RecQ)
JM955_RS14520	COG4637	Psort location Cytoplasmic, score
JM955_RS14540	COG3397	chitin binding
JM955_RS14555	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JM955_RS14560	COG1115	amino acid carrier protein
JM955_RS14565	COG1012	belongs to the aldehyde dehydrogenase family
JM955_RS14570	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JM955_RS14580	COG3938	Belongs to the proline racemase family
JM955_RS14585	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JM955_RS14625	COG0586	Pfam SNARE associated Golgi protein
JM955_RS14635	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JM955_RS14640	COG4166	transmembrane transport
JM955_RS14650	COG4948	Mandelate Racemase Muconate Lactonizing
JM955_RS14665	COG0667	Aldo Keto reductase
JM955_RS14705	COG3850	Histidine kinase
JM955_RS14705	COG5002	protein histidine kinase activity
JM955_RS14710	COG0745	RESPONSE REGULATOR receiver
JM955_RS14750	COG1164	Oligoendopeptidase f
JM955_RS14755	COG1307	EDD domain protein, DegV family
JM955_RS14795	COG2814	Major facilitator Superfamily
JM955_RS14805	COG1664	Polymer-forming cytoskeletal
JM955_RS14810	COG0789	Transcriptional regulator
JM955_RS14815	COG4533	DNA binding
JM955_RS14820	COG0477	Major facilitator Superfamily
JM955_RS14820	COG2814	Major facilitator Superfamily
JM955_RS14845	COG2261	transglycosylase associated protein
JM955_RS14860	COG2226	methyltransferase
JM955_RS14895	COG0436	Aminotransferase
JM955_RS14900	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JM955_RS14910	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JM955_RS14925	COG1131	(ABC) transporter
JM955_RS14980	COG0628	permease
JM955_RS14990	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JM955_RS14995	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JM955_RS15000	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JM955_RS15040	COG2746	aminoglycoside 3-N-acetyltransferase activity
JM955_RS15050	COG0697	spore germination
JM955_RS15080	COG4912	Dna alkylation repair
JM955_RS15085	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JM955_RS15090	COG0346	lactoylglutathione lyase activity
JM955_RS15095	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS15120	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JM955_RS15125	COG0861	Integral membrane protein TerC family
JM955_RS15130	COG1368	sulfuric ester hydrolase activity
JM955_RS15135	COG0488	(ABC) transporter
JM955_RS15140	COG2409	Drug exporters of the RND superfamily
JM955_RS15140	COG1033	growth of symbiont in host cell
JM955_RS15145	COG1309	transcriptional regulator
JM955_RS15150	COG1051	belongs to the nudix hydrolase family
JM955_RS15165	COG0287	Prephenate dehydrogenase
JM955_RS15180	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JM955_RS15180	COG1605	Chorismate mutase
JM955_RS15225	COG1388	LysM domain
JM955_RS15225	COG3584	3D domain protein
JM955_RS15240	COG0277	FAD linked oxidase domain protein
JM955_RS15265	COG1879	ABC-type sugar transport system periplasmic component
JM955_RS15270	COG1172	Belongs to the binding-protein-dependent transport system permease family
JM955_RS15275	COG1172	Belongs to the binding-protein-dependent transport system permease family
JM955_RS15285	COG2390	Transcriptional regulator
JM955_RS15290	COG1070	Carbohydrate kinase
JM955_RS15310	COG2329	Antibiotic biosynthesis monooxygenase
JM955_RS15325	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM955_RS15340	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JM955_RS15345	COG4187	Peptidase family M20/M25/M40
JM955_RS15350	COG1414	Transcriptional regulator
JM955_RS15355	COG0833	amino acid
JM955_RS15370	COG3239	Fatty acid desaturase
JM955_RS15380	COG2720	vancomycin resistance protein
JM955_RS15385	COG1785	Belongs to the alkaline phosphatase family
JM955_RS15395	COG3655	Transcriptional regulator
JM955_RS15420	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS15425	COG0346	lactoylglutathione lyase activity
JM955_RS15445	COG0714	Associated with various cellular activities
JM955_RS15465	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JM955_RS15470	COG0753	catalase activity
JM955_RS15505	COG0778	Nitroreductase
JM955_RS15510	COG1846	Transcriptional regulator
JM955_RS15545	COG1725	Transcriptional regulator
JM955_RS15555	COG4282	regulation of fungal-type cell wall biogenesis
JM955_RS15580	COG0456	acetyltransferase
JM955_RS15595	COG0697	spore germination
JM955_RS15600	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS15640	COG0730	response to heat
JM955_RS15650	COG0833	amino acid
JM955_RS15660	COG4335	DNA alkylation repair
JM955_RS15690	COG0768	penicillin binding
JM955_RS15720	COG1984	allophanate hydrolase subunit 2
JM955_RS15725	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JM955_RS15730	COG1414	Transcriptional regulator
JM955_RS15745	COG3142	Participates in the control of copper homeostasis
JM955_RS15750	COG0640	Transcriptional regulator
JM955_RS15760	COG1960	acyl-CoA dehydrogenase activity
JM955_RS15775	COG3314	Sporulation integral membrane protein YlbJ
JM955_RS15795	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
JM955_RS15820	COG0574	Belongs to the PEP-utilizing enzyme family
JM955_RS15820	COG3848	Pyruvate phosphate dikinase
JM955_RS15825	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS15845	COG1063	alcohol dehydrogenase
JM955_RS15855	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JM955_RS15865	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JM955_RS15880	COG0737	Belongs to the 5'-nucleotidase family
JM955_RS15885	COG2267	carboxylic ester hydrolase activity
JM955_RS15890	COG1335	isochorismatase
JM955_RS15910	COG0583	DNA-binding transcription factor activity
JM955_RS15915	COG1846	Transcriptional regulator
JM955_RS15920	COG0598	Magnesium transport protein CorA
JM955_RS15960	COG0415	Belongs to the DNA photolyase family
JM955_RS15975	COG0288	reversible hydration of carbon dioxide
JM955_RS15985	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JM955_RS15990	COG5609	conserved protein (DUF2294)
JM955_RS16000	COG0456	acetyltransferase
JM955_RS16005	COG1575	Belongs to the MenA family. Type 1 subfamily
JM955_RS16025	COG0798	PFAM Bile acid sodium symporter
JM955_RS16030	COG0346	lactoylglutathione lyase activity
JM955_RS16035	COG0640	Transcriptional regulator
JM955_RS16050	COG2169	Transcriptional regulator
JM955_RS16065	COG1309	transcriptional regulator
JM955_RS16070	COG2814	Major facilitator Superfamily
JM955_RS16075	COG1309	transcriptional regulator
JM955_RS16080	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS16085	COG1522	sequence-specific DNA binding
JM955_RS16100	COG0346	lactoylglutathione lyase activity
JM955_RS16130	COG0814	amino acid
JM955_RS16135	COG0583	DNA-binding transcription factor activity
JM955_RS16165	COG1131	(ABC) transporter
JM955_RS16170	COG1725	Transcriptional regulator
JM955_RS16215	COG0745	RESPONSE REGULATOR receiver
JM955_RS16220	COG5002	protein histidine kinase activity
JM955_RS16220	COG3850	Histidine kinase
JM955_RS16260	COG1136	(ABC) transporter
JM955_RS16295	COG2814	Major facilitator Superfamily
JM955_RS16315	COG2515	1-aminocyclopropane-1-carboxylate deaminase
JM955_RS16325	COG1690	Belongs to the RtcB family
JM955_RS16335	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
JM955_RS16355	COG0577	efflux transmembrane transporter activity
JM955_RS16375	COG3850	Histidine kinase
JM955_RS16375	COG5002	protein histidine kinase activity
JM955_RS16385	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM955_RS16395	COG1619	proteins homologs of microcin C7 resistance protein MccF
JM955_RS16415	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JM955_RS16435	COG0662	Cupin 2, conserved barrel domain protein
JM955_RS16440	COG2207	Transcriptional regulator
JM955_RS16440	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM955_RS16460	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM955_RS16460	COG3409	Peptidoglycan-binding domain 1 protein
JM955_RS16470	COG2814	Major facilitator Superfamily
JM955_RS16490	COG1876	peptidase activity
JM955_RS16495	COG2843	Capsule synthesis protein
JM955_RS16505	COG0477	Major facilitator Superfamily
JM955_RS16520	COG1846	Transcriptional regulator
JM955_RS16525	COG2814	Major facilitator Superfamily
JM955_RS16535	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JM955_RS16540	COG1131	(ABC) transporter
JM955_RS16560	COG2076	Multidrug Resistance protein
JM955_RS16565	COG1309	transcriptional regulator
JM955_RS16585	COG2031	fatty acid transporter
JM955_RS16595	COG2249	NAD(P)H dehydrogenase (quinone) activity
JM955_RS16630	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JM955_RS16650	COG1288	antiporter activity
JM955_RS16655	COG2356	endonuclease I
JM955_RS16685	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JM955_RS16705	COG1733	regulation of RNA biosynthetic process
JM955_RS16710	COG0778	Nitroreductase
JM955_RS16740	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS16750	COG1131	(ABC) transporter
JM955_RS16780	COG1011	Hydrolase
JM955_RS16790	COG2365	Tyrosine phosphatase family
JM955_RS16815	COG0346	lactoylglutathione lyase activity
JM955_RS16820	COG1940	carbohydrate kinase activity
JM955_RS16830	COG0110	maltose O-acetyltransferase activity
JM955_RS16845	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS16860	COG0628	permease
JM955_RS16885	COG0500	methyltransferase
JM955_RS16895	COG0477	Major facilitator Superfamily
JM955_RS16935	COG1253	flavin adenine dinucleotide binding
JM955_RS16940	COG0789	Transcriptional regulator
JM955_RS16950	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JM955_RS16980	COG0697	spore germination
JM955_RS16990	COG1357	PFAM Pentapeptide repeats (8 copies)
JM955_RS16995	COG3813	Protein conserved in bacteria
JM955_RS17000	COG2706	6-phosphogluconolactonase activity
JM955_RS17005	COG1070	Carbohydrate kinase
JM955_RS17020	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JM955_RS17025	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JM955_RS17030	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JM955_RS17035	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JM955_RS17065	COG0814	amino acid
JM955_RS17095	COG2188	Transcriptional regulator
JM955_RS17100	COG0673	inositol 2-dehydrogenase activity
JM955_RS17120	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS17140	COG0384	phenazine biosynthesis protein PhzF
JM955_RS17155	COG0318	PFAM AMP-dependent synthetase and ligase
JM955_RS17160	COG2249	NAD(P)H dehydrogenase (quinone) activity
JM955_RS17165	COG1733	regulation of RNA biosynthetic process
JM955_RS17175	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JM955_RS17195	COG0726	polysaccharide deacetylase
JM955_RS17205	COG1191	sigma factor activity
JM955_RS17240	COG1280	lysine exporter protein (LysE YggA)
JM955_RS17285	COG1151	hydroxylamine reductase activity
JM955_RS17295	COG3409	Peptidoglycan-binding domain 1 protein
JM955_RS17295	COG3757	hydrolase, family 25
JM955_RS17330	COG2072	flavoprotein involved in K transport
JM955_RS17365	COG0604	alcohol dehydrogenase
JM955_RS17370	COG1113	amino acid transport
JM955_RS17375	COG2814	Major facilitator Superfamily
JM955_RS17405	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JM955_RS17410	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JM955_RS17425	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM955_RS17430	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM955_RS17435	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM955_RS17440	COG3739	integral membrane protein
JM955_RS17460	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS17475	COG0583	DNA-binding transcription factor activity
JM955_RS17495	COG1193	negative regulation of DNA recombination
JM955_RS17510	COG2162	N-hydroxyarylamine O-acetyltransferase activity
JM955_RS17515	COG1164	Oligoendopeptidase f
JM955_RS17550	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM955_RS17575	COG0584	glycerophosphoryl diester phosphodiesterase
JM955_RS17620	COG0640	Transcriptional regulator
JM955_RS17625	COG0604	alcohol dehydrogenase
JM955_RS17635	COG0457	Tetratricopeptide repeat
JM955_RS17645	COG2808	Putative FMN-binding domain
JM955_RS17650	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JM955_RS17665	COG0277	FAD linked oxidase domain protein
JM955_RS17680	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS17680	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM955_RS17685	COG1252	NADH dehydrogenase
JM955_RS17700	COG0584	glycerophosphoryl diester phosphodiesterase
JM955_RS17740	COG0823	Involved in the tonB-independent uptake of proteins
JM955_RS17745	COG3397	chitin binding
JM955_RS17755	COG0697	spore germination
JM955_RS17775	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JM955_RS17785	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JM955_RS17800	COG0457	Tetratricopeptide repeat
JM955_RS17825	COG1404	Belongs to the peptidase S8 family
JM955_RS17850	COG3300	MHYT domain
JM955_RS17850	COG5001	Diguanylate cyclase
JM955_RS17855	COG0488	(ABC) transporter
JM955_RS17860	COG1309	transcriptional regulator
JM955_RS17875	COG1876	peptidase activity
JM955_RS17900	COG3852	Histidine kinase
JM955_RS17910	COG1285	pathogenesis
JM955_RS17920	COG2514	catechol 2,3-dioxygenase activity
JM955_RS17925	COG2720	vancomycin resistance protein
JM955_RS17965	COG0716	FMN binding
JM955_RS17975	COG1051	belongs to the nudix hydrolase family
JM955_RS17995	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS18005	COG0165	Argininosuccinate lyase
JM955_RS18020	COG4145	pantothenate transmembrane transporter activity
JM955_RS18030	COG1012	belongs to the aldehyde dehydrogenase family
JM955_RS18035	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS18045	COG1657	PFAM Prenyltransferase squalene oxidase
JM955_RS18050	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
JM955_RS18055	COG2962	Rard protein
JM955_RS18060	COG3326	Membrane
JM955_RS18075	COG0489	protein tyrosine kinase activity
JM955_RS18085	COG0314	molybdopterin synthase activity
JM955_RS18090	COG0303	'Molybdopterin
JM955_RS18095	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JM955_RS18100	COG2116	formate transmembrane transporter activity
JM955_RS18110	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JM955_RS18115	COG5609	conserved protein (DUF2294)
JM955_RS18120	COG2427	Protein of unknown function (DUF1641)
JM955_RS18125	COG3383	formate dehydrogenase (NAD+) activity
JM955_RS18130	COG0697	spore germination
JM955_RS18145	COG0531	amino acid
JM955_RS18180	COG2226	methyltransferase
JM955_RS18185	COG4166	transmembrane transport
JM955_RS18195	COG4166	transmembrane transport
JM955_RS18200	COG4166	transmembrane transport
JM955_RS18205	COG1316	TRANSCRIPTIONal
JM955_RS18215	COG1595	DNA-templated transcription, initiation
JM955_RS18225	COG1131	(ABC) transporter
JM955_RS18245	COG0673	inositol 2-dehydrogenase activity
JM955_RS18250	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JM955_RS18255	COG0187	DNA topoisomerase II activity
JM955_RS18260	COG1832	CoA-binding protein
JM955_RS18265	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JM955_RS18270	COG0745	RESPONSE REGULATOR receiver
JM955_RS18290	COG4841	protein insertion into membrane
JM955_RS18295	COG0824	Thioesterase
JM955_RS18320	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JM955_RS18330	COG2274	protein secretion by the type I secretion system
JM955_RS18335	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JM955_RS18365	COG2211	Major facilitator Superfamily
JM955_RS18375	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JM955_RS18390	COG0183	Belongs to the thiolase family
JM955_RS18395	COG0318	PFAM AMP-dependent synthetase and ligase
JM955_RS18400	COG1268	BioY protein
JM955_RS18405	COG0318	PFAM AMP-dependent synthetase and ligase
JM955_RS18415	COG5002	protein histidine kinase activity
JM955_RS18430	COG1136	(ABC) transporter
JM955_RS18445	COG1131	(ABC) transporter
JM955_RS18540	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM955_RS18550	COG5002	protein histidine kinase activity
JM955_RS18555	COG0400	carboxylic ester hydrolase activity
JM955_RS18560	COG0346	lactoylglutathione lyase activity
JM955_RS18565	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JM955_RS18570	COG0069	glutamate synthase activity
JM955_RS18575	COG1902	pentaerythritol trinitrate reductase activity
JM955_RS18580	COG1329	Transcriptional regulator
JM955_RS18585	COG0010	Belongs to the arginase family
JM955_RS18610	COG2226	methyltransferase
JM955_RS18635	COG4846	Membrane protein involved in cytochrome C biogenesis
JM955_RS18640	COG0785	Cytochrome C biogenesis protein
JM955_RS18650	COG1473	amidohydrolase
JM955_RS18660	COG1131	(ABC) transporter
JM955_RS18675	COG0583	DNA-binding transcription factor activity
JM955_RS18685	COG1346	cytolysis
JM955_RS18700	COG0730	response to heat
JM955_RS18725	COG1132	(ABC) transporter
JM955_RS18730	COG1132	(ABC) transporter
JM955_RS18765	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JM955_RS18770	COG0737	Belongs to the 5'-nucleotidase family
JM955_RS18780	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JM955_RS18800	COG1695	Transcriptional regulator
JM955_RS18810	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM955_RS18810	COG3409	Peptidoglycan-binding domain 1 protein
JM955_RS18810	COG1388	LysM domain
JM955_RS18845	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JM955_RS18850	COG0174	glutamine synthetase
JM955_RS18855	COG0789	Transcriptional regulator
JM955_RS18860	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
JM955_RS18865	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JM955_RS18870	COG2860	membrane
JM955_RS18880	COG0464	growth
JM955_RS18910	COG3584	3D domain protein
JM955_RS18910	COG1388	LysM domain
JM955_RS18915	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JM955_RS18915	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JM955_RS18915	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JM955_RS18920	COG1105	Belongs to the carbohydrate kinase PfkB family
JM955_RS18925	COG1349	DNA-binding transcription factor activity
JM955_RS18930	COG1979	alcohol dehydrogenase
JM955_RS18935	COG2322	membrane
JM955_RS18945	COG1113	amino acid transport
JM955_RS18955	COG1408	metallophosphoesterase
JM955_RS18960	COG2116	formate transmembrane transporter activity
JM955_RS18975	COG2217	Heavy metal translocating P-type atpase
JM955_RS18980	COG2608	mercury ion transmembrane transporter activity
JM955_RS18990	COG1937	Protein conserved in bacteria
JM955_RS19000	COG2819	hydrolase of the alpha beta superfamily
JM955_RS19005	COG1120	ATPase activity
JM955_RS19010	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM955_RS19015	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM955_RS19020	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM955_RS19025	COG0708	Exodeoxyribonuclease III
JM955_RS19030	COG2169	Transcriptional regulator
JM955_RS19035	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JM955_RS19040	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JM955_RS19050	COG2364	Membrane
JM955_RS19065	COG2267	carboxylic ester hydrolase activity
JM955_RS19070	COG5001	Diguanylate cyclase
JM955_RS19070	COG3300	MHYT domain
JM955_RS19090	COG1086	Polysaccharide biosynthesis protein
JM955_RS19105	COG1346	cytolysis
JM955_RS19115	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS19125	COG2188	Transcriptional regulator
JM955_RS19130	COG2723	6-phospho-beta-galactosidase activity
JM955_RS19140	COG1404	Belongs to the peptidase S8 family
JM955_RS19145	COG3773	Cell wall hydrolase
JM955_RS19155	COG1368	sulfuric ester hydrolase activity
JM955_RS19160	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JM955_RS19185	COG4550	Control of competence regulator ComK, YlbF/YmcA
JM955_RS19195	COG1013	pyruvate-flavodoxin oxidoreductase activity
JM955_RS19200	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JM955_RS19200	COG0674	pyruvate-flavodoxin oxidoreductase activity
JM955_RS19210	COG2359	stage V sporulation protein S
JM955_RS19215	COG1692	metallophosphoesterase
JM955_RS19235	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JM955_RS19240	COG1426	Protein conserved in bacteria
JM955_RS19255	COG0300	oxidoreductase activity
JM955_RS19260	COG0612	Peptidase, M16
JM955_RS19265	COG0612	Peptidase, M16
JM955_RS19270	COG1079	Belongs to the binding-protein-dependent transport system permease family
JM955_RS19275	COG4603	Belongs to the binding-protein-dependent transport system permease family
JM955_RS19280	COG3845	ABC transporter
JM955_RS19285	COG1744	ABC transporter substrate-binding protein PnrA-like
JM955_RS19290	COG2188	Transcriptional regulator
JM955_RS19305	COG0740	serine-type endopeptidase activity
JM955_RS19310	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JM955_RS19320	COG0527	aspartate kinase activity
JM955_RS19325	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JM955_RS19330	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JM955_RS19345	COG5444	nuclease activity
JM955_RS19360	COG0582	viral genome integration into host DNA
JM955_RS19410	COG0305	Participates in initiation and elongation during chromosome replication
JM955_RS19475	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JM955_RS19480	COG1873	PFAM PRC-barrel domain
JM955_RS19485	COG0612	Peptidase, M16
JM955_RS19490	COG0726	polysaccharide deacetylase
JM955_RS19505	COG0196	riboflavin kinase activity
JM955_RS19515	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JM955_RS19520	COG1550	Protein conserved in bacteria
JM955_RS19530	COG1358	cellular component organization or biogenesis
JM955_RS19535	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JM955_RS19540	COG0195	Participates in both transcription termination and antitermination
JM955_RS19560	COG0750	zinc metalloprotease
JM955_RS19570	COG4589	Belongs to the CDS family
JM955_RS19615	COG4974	Belongs to the 'phage' integrase family
JM955_RS19625	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JM955_RS19630	COG0758	DNA mediated transformation
JM955_RS19635	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JM955_RS19675	COG1837	Belongs to the UPF0109 family
JM955_RS19685	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JM955_RS19695	COG0552	protein localization to endoplasmic reticulum
JM955_RS19700	COG1196	nuclear chromosome segregation
JM955_RS19710	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JM955_RS19715	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS19720	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JM955_RS19735	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JM955_RS19740	COG1461	Dihydroxyacetone kinase
JM955_RS19745	COG1302	Protein conserved in bacteria
JM955_RS19760	COG1564	THIamine pyrophosphokinase
JM955_RS19765	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JM955_RS19775	COG0515	serine threonine protein kinase
JM955_RS19775	COG2815	serine threonine protein kinase
JM955_RS19780	COG0631	protein serine/threonine phosphatase activity
JM955_RS19790	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JM955_RS19790	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JM955_RS19805	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JM955_RS19810	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JM955_RS19830	COG1561	YicC-like family, N-terminal region
JM955_RS19835	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JM955_RS19850	COG0006	proline dipeptidase activity
JM955_RS19870	COG3069	C4-dicarboxylate transmembrane transporter activity
JM955_RS19935	COG0564	pseudouridine synthase activity
JM955_RS19955	COG3599	regulation of cell shape
JM955_RS19960	COG2302	S4 RNA-binding domain
JM955_RS19965	COG0762	integral membrane protein
JM955_RS19975	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JM955_RS19985	COG1873	PFAM PRC-barrel domain
JM955_RS19990	COG1191	sigma factor activity
JM955_RS19995	COG1191	sigma factor activity
JM955_RS20005	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JM955_RS20010	COG0849	cell division
JM955_RS20030	COG0772	Belongs to the SEDS family
JM955_RS20050	COG0768	penicillin binding
JM955_RS20055	COG0768	penicillin binding
JM955_RS20075	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JM955_RS20090	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JM955_RS20095	COG1399	metal-binding, possibly nucleic acid-binding protein
JM955_RS20105	COG3480	Lon protease (S16) C-terminal proteolytic domain
JM955_RS20110	COG1752	Esterase of the alpha-beta hydrolase superfamily
JM955_RS20115	COG3314	Sporulation integral membrane protein YlbJ
JM955_RS20125	COG0742	ribosomal rna small subunit methyltransferase
JM955_RS20140	COG3679	Belongs to the UPF0342 family
JM955_RS20145	COG0406	alpha-ribazole phosphatase activity
JM955_RS20160	COG2340	Cysteine-rich secretory protein family
JM955_RS20175	COG3336	cytochrome c oxidase
JM955_RS20190	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JM955_RS20210	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JM955_RS20215	COG0772	Belongs to the SEDS family
JM955_RS20225	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JM955_RS20230	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JM955_RS20240	COG4896	Protein conserved in bacteria
JM955_RS20255	COG1217	gtp-binding protein TYPA
JM955_RS20265	COG0483	inositol monophosphate 1-phosphatase activity
JM955_RS20285	COG1982	Orn Lys Arg decarboxylase major
JM955_RS20335	COG0022	dehydrogenase e1 component
JM955_RS20340	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JM955_RS20355	COG0561	phosphatase activity
JM955_RS20365	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JM955_RS20370	COG0569	domain protein
JM955_RS20390	COG0583	DNA-binding transcription factor activity
JM955_RS20395	COG0517	IMP dehydrogenase activity
JM955_RS20405	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
JM955_RS20415	COG4703	Protein of unknown function (DUF1797)
JM955_RS20430	COG2200	EAL domain
JM955_RS20435	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS20440	COG1408	metallophosphoesterase
JM955_RS20485	COG2814	Major facilitator Superfamily
JM955_RS20505	COG3209	COG3209 Rhs family protein
JM955_RS20515	COG2205	protein histidine kinase activity
JM955_RS20525	COG0436	Aminotransferase
JM955_RS20530	COG1609	Transcriptional regulator
JM955_RS20535	COG3833	ABC-type maltose transport systems, permease component
JM955_RS20540	COG1175	transmembrane transport
JM955_RS20545	COG2182	Extracellular solute-binding protein
JM955_RS20555	COG0366	Alpha amylase catalytic
JM955_RS20560	COG3842	ATPase activity
JM955_RS20600	COG0183	Belongs to the thiolase family
JM955_RS20635	COG1695	Transcriptional regulator
JM955_RS20640	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS20660	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JM955_RS20665	COG0436	Aminotransferase
JM955_RS20700	COG2084	Dehydrogenase
JM955_RS20710	COG2199	diguanylate cyclase activity
JM955_RS20715	COG0778	Nitroreductase
JM955_RS20740	COG2190	(PTS) system
JM955_RS20740	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JM955_RS20740	COG1263	PTS System
JM955_RS20745	COG3711	transcriptional antiterminator
JM955_RS20755	COG2188	Transcriptional regulator
JM955_RS20765	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JM955_RS20790	COG1547	Domain of unknown function (DUF309)
JM955_RS20795	COG0456	acetyltransferase
JM955_RS20800	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JM955_RS20805	COG4086	secreted protein
JM955_RS20810	COG0561	phosphatase activity
JM955_RS20815	COG0697	spore germination
JM955_RS20830	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JM955_RS20855	COG0733	neurotransmitter:sodium symporter activity
JM955_RS20875	COG1686	Belongs to the peptidase S11 family
JM955_RS20880	COG1725	Transcriptional regulator
JM955_RS20885	COG1131	(ABC) transporter
JM955_RS20900	COG1846	Transcriptional regulator
JM955_RS20915	COG0598	Magnesium transport protein CorA
JM955_RS20940	COG4974	Belongs to the 'phage' integrase family
JM955_RS20950	COG0735	belongs to the Fur family
JM955_RS20955	COG1300	Membrane
JM955_RS20975	COG0667	Aldo Keto reductase
JM955_RS20980	COG0656	L-ascorbic acid biosynthetic process
JM955_RS20985	COG0456	acetyltransferase
JM955_RS20985	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JM955_RS20995	COG1525	nuclease
JM955_RS20995	COG0737	Belongs to the 5'-nucleotidase family
JM955_RS20995	COG4085	toxin activity
JM955_RS21005	COG0596	Alpha beta hydrolase
JM955_RS21010	COG2056	Na+-H+ antiporter family
JM955_RS21015	COG1609	Transcriptional regulator
JM955_RS21020	COG0456	acetyltransferase
JM955_RS21025	COG1073	alpha beta
JM955_RS21040	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JM955_RS21040	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JM955_RS21045	COG0307	riboflavin synthase, alpha
JM955_RS21075	COG1073	alpha beta
JM955_RS21075	COG2226	methyltransferase
JM955_RS21090	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JM955_RS21100	COG1757	Na H antiporter
JM955_RS21105	COG0737	Belongs to the 5'-nucleotidase family
JM955_RS21115	COG1522	sequence-specific DNA binding
JM955_RS21155	COG5444	nuclease activity
JM955_RS21190	COG0300	oxidoreductase activity
JM955_RS21195	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS21200	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JM955_RS21205	COG1760	l-serine dehydratase
JM955_RS21210	COG1760	l-serine dehydratase
JM955_RS21245	COG1285	pathogenesis
JM955_RS21255	COG2195	Cleaves the N-terminal amino acid of tripeptides
JM955_RS21260	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS21275	COG1376	ErfK ybiS ycfS ynhG family protein
JM955_RS21280	COG4129	membrane
JM955_RS21285	COG1126	abc transporter atp-binding protein
JM955_RS21290	COG0765	amino acid transport
JM955_RS21295	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JM955_RS21315	COG2323	membrane
JM955_RS21320	COG0772	Belongs to the SEDS family
JM955_RS21325	COG0508	dehydrogenase complex catalyzes the overall conversion of
JM955_RS21330	COG0022	dehydrogenase e1 component
JM955_RS21335	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JM955_RS21340	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JM955_RS21355	COG0280	phosphate acetyltransferase
JM955_RS21360	COG3290	protein histidine kinase activity
JM955_RS21360	COG3829	transcription factor binding
JM955_RS21370	COG0584	glycerophosphoryl diester phosphodiesterase
JM955_RS21375	COG3093	addiction module antidote protein HigA
JM955_RS21390	COG0750	zinc metalloprotease
JM955_RS21395	COG0497	DNA recombination
JM955_RS21405	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JM955_RS21415	COG0142	geranyltranstransferase activity
JM955_RS21440	COG1302	Protein conserved in bacteria
JM955_RS21445	COG0439	Biotin carboxylase
JM955_RS21450	COG0511	ligase activity, forming carbon-carbon bonds
JM955_RS21495	COG3854	ATPases associated with a variety of cellular activities
JM955_RS21520	COG0006	proline dipeptidase activity
JM955_RS21535	COG3872	metal-dependent enzyme
JM955_RS21545	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JM955_RS21580	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM955_RS21590	COG1609	Transcriptional regulator
JM955_RS21600	COG2076	Multidrug Resistance protein
JM955_RS21605	COG2076	Multidrug Resistance protein
JM955_RS21640	COG1725	Transcriptional regulator
JM955_RS21670	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JM955_RS21735	COG1459	type II secretion system
JM955_RS21740	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JM955_RS21805	COG1410	methionine synthase
JM955_RS21805	COG0646	methionine synthase
JM955_RS21810	COG0646	methionine synthase
JM955_RS21810	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
JM955_RS21815	COG0626	cystathionine gamma-synthase activity
JM955_RS21820	COG0626	cystathionine gamma-synthase activity
JM955_RS21840	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS21850	COG1940	carbohydrate kinase activity
JM955_RS21855	COG4483	Protein conserved in bacteria
JM955_RS21860	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JM955_RS21865	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JM955_RS21870	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JM955_RS21875	COG0704	Plays a role in the regulation of phosphate uptake
JM955_RS21885	COG0573	inorganic phosphate transmembrane transporter activity
JM955_RS21890	COG0573	inorganic phosphate transmembrane transporter activity
JM955_RS21895	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JM955_RS21900	COG0768	penicillin binding
JM955_RS21905	COG0477	Major facilitator Superfamily
JM955_RS21910	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JM955_RS21920	COG5521	maltodextrose utilization protein MalA
JM955_RS21935	COG0735	belongs to the Fur family
JM955_RS21940	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JM955_RS21945	COG1121	(ABC) transporter
JM955_RS21950	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM955_RS21980	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JM955_RS21985	COG2384	SAM-dependent methyltransferase
JM955_RS21995	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JM955_RS22000	COG0358	DNA primase activity
JM955_RS22015	COG0517	IMP dehydrogenase activity
JM955_RS22030	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JM955_RS22035	COG0295	cytidine deaminase activity
JM955_RS22040	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JM955_RS22050	COG1480	7TM receptor with intracellular HD hydrolase
JM955_RS22055	COG1702	phosphate starvation-inducible protein PhoH
JM955_RS22075	COG1610	YqeY-like protein
JM955_RS22080	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JM955_RS22085	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JM955_RS22090	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JM955_RS22120	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JM955_RS22125	COG1733	regulation of RNA biosynthetic process
JM955_RS22150	COG1466	dna polymerase III delta subunit
JM955_RS22160	COG0658	competence protein
JM955_RS22160	COG2333	competence protein COMEC
JM955_RS22165	COG2131	deaminase
JM955_RS22170	COG1596	polysaccharide export
JM955_RS22170	COG1555	photosystem II stabilization
JM955_RS22175	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JM955_RS22180	COG2226	methyltransferase
JM955_RS22185	COG0799	negative regulation of ribosome biogenesis
JM955_RS22190	COG1713	HD superfamily hydrolase involved in NAD metabolism
JM955_RS22200	COG1534	Rna-binding protein
JM955_RS22210	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JM955_RS22215	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
JM955_RS22240	COG1595	DNA-templated transcription, initiation
JM955_RS22250	COG0778	Nitroreductase
JM955_RS22255	COG2357	RelA SpoT domain protein
JM955_RS22265	COG1785	Belongs to the alkaline phosphatase family
JM955_RS22275	COG2267	carboxylic ester hydrolase activity
JM955_RS22315	COG3186	Phenylalanine-4-hydroxylase
JM955_RS22325	COG2514	catechol 2,3-dioxygenase activity
JM955_RS22330	COG2259	Doxx family
JM955_RS22370	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM955_RS22380	COG1012	belongs to the aldehyde dehydrogenase family
JM955_RS22380	COG1454	alcohol dehydrogenase
JM955_RS22385	COG0626	cystathionine gamma-synthase activity
JM955_RS22390	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JM955_RS22415	COG0768	penicillin binding
JM955_RS22430	COG0826	peptidase U32
JM955_RS22435	COG0826	peptidase U32
JM955_RS22440	COG4122	O-methyltransferase activity
JM955_RS22445	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JM955_RS22460	COG4472	Bacterial protein of unknown function (DUF965)
JM955_RS22475	COG0628	permease
JM955_RS22495	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JM955_RS22510	COG1104	cysteine desulfurase activity
JM955_RS22515	COG1959	2 iron, 2 sulfur cluster binding
JM955_RS22520	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JM955_RS22530	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JM955_RS22555	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JM955_RS22565	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
JM955_RS22565	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JM955_RS22570	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JM955_RS22575	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JM955_RS22575	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JM955_RS22585	COG2244	polysaccharide biosynthetic process
JM955_RS22590	COG2323	membrane
JM955_RS22600	COG1862	Preprotein translocase
JM955_RS22630	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JM955_RS22660	COG0157	Belongs to the NadC ModD family
JM955_RS22665	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JM955_RS22670	COG1104	cysteine desulfurase activity
JM955_RS22675	COG1827	regulation of RNA biosynthetic process
JM955_RS22680	COG2258	MOSC domain
JM955_RS22685	COG0077	Prephenate dehydratase
JM955_RS22690	COG0577	efflux transmembrane transporter activity
JM955_RS22695	COG0577	efflux transmembrane transporter activity
JM955_RS22700	COG1136	(ABC) transporter
JM955_RS22705	COG5002	protein histidine kinase activity
JM955_RS22710	COG0745	RESPONSE REGULATOR receiver
JM955_RS22720	COG3290	protein histidine kinase activity
JM955_RS22730	COG2868	ribosomal protein
JM955_RS22740	COG1530	ribonuclease E activity
JM955_RS22745	COG1994	Peptidase M50
JM955_RS22750	COG0739	heme binding
JM955_RS22755	COG2894	cell division
JM955_RS22775	COG1077	Cell shape determining protein MreB Mrl
JM955_RS22795	COG0285	dihydrofolate synthase activity
JM955_RS22810	COG1388	LysM domain
JM955_RS22820	COG0113	porphobilinogen synthase activity
JM955_RS22825	COG1587	Uroporphyrinogen-III synthase
JM955_RS22835	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JM955_RS22845	COG1846	Transcriptional regulator
JM955_RS22850	COG1764	response to oxidative stress
JM955_RS22865	COG0470	DNA polymerase III
JM955_RS22865	COG1067	ATP-dependent peptidase activity
JM955_RS22910	COG0622	Phosphoesterase
JM955_RS22925	COG5401	PFAM Sporulation and spore germination
JM955_RS22945	COG1309	transcriptional regulator
JM955_RS22955	COG2197	response regulator
JM955_RS22960	COG2233	PERMEase
JM955_RS22965	COG0402	S-adenosylhomocysteine deaminase activity
JM955_RS22970	COG1983	PspC domain protein
JM955_RS22975	COG1396	sequence-specific DNA binding
JM955_RS22980	COG0697	spore germination
JM955_RS22990	COG1959	2 iron, 2 sulfur cluster binding
JM955_RS22995	COG1668	transmembrane transport
JM955_RS23000	COG4152	abc transporter atp-binding protein
JM955_RS23005	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
JM955_RS23010	COG1360	Flagellar Motor Protein
JM955_RS23015	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JM955_RS23020	COG1876	peptidase activity
JM955_RS23025	COG0824	Thioesterase
JM955_RS23030	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JM955_RS23035	COG1053	succinate dehydrogenase
JM955_RS23040	COG2009	succinate dehydrogenase
JM955_RS23045	COG1719	4-vinyl reductase, 4VR
JM955_RS23055	COG3118	belongs to the thioredoxin family
JM955_RS23060	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JM955_RS23065	COG2086	electron transfer activity
JM955_RS23070	COG1024	Enoyl-CoA hydratase
JM955_RS23075	COG1309	transcriptional regulator
JM955_RS23080	COG0318	PFAM AMP-dependent synthetase and ligase
JM955_RS23105	COG2318	DinB family
JM955_RS23135	COG1131	(ABC) transporter
JM955_RS23140	COG2205	protein histidine kinase activity
JM955_RS23145	COG0745	RESPONSE REGULATOR receiver
JM955_RS23155	COG4895	conserved protein (DUF2196)
JM955_RS23160	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JM955_RS23170	COG4509	Sortase family
JM955_RS23175	COG1120	ATPase activity
JM955_RS23190	COG5386	Cell surface protein
JM955_RS23200	COG5386	Cell surface protein
JM955_RS23205	COG1114	Component of the transport system for branched-chain amino acids
JM955_RS23210	COG1187	pseudouridine synthase activity
JM955_RS23220	COG1796	DNA polymerase
JM955_RS23220	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JM955_RS23225	COG1286	toxin biosynthetic process
JM955_RS23265	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JM955_RS23270	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JM955_RS23280	COG1418	mRNA catabolic process
JM955_RS23300	COG2814	Major facilitator Superfamily
JM955_RS23305	COG1566	PFAM secretion protein HlyD family protein
JM955_RS23310	COG1309	transcriptional regulator
JM955_RS23315	COG1363	Peptidase, m42
JM955_RS23340	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JM955_RS23355	COG1484	DNA-dependent DNA replication
JM955_RS23360	COG3611	Membrane attachment protein
JM955_RS23370	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
JM955_RS23375	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JM955_RS23380	COG0237	dephospho-CoA kinase activity
JM955_RS23385	COG1971	Probably functions as a manganese efflux pump
JM955_RS23395	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JM955_RS23395	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JM955_RS23400	COG5002	protein histidine kinase activity
JM955_RS23405	COG0745	RESPONSE REGULATOR receiver
JM955_RS23425	COG0538	isocitrate dehydrogenase activity
JM955_RS23430	COG0372	Belongs to the citrate synthase family
JM955_RS23440	COG0628	permease
JM955_RS23445	COG3030	protein affecting phage T7 exclusion by the F plasmid
JM955_RS23470	COG1725	Transcriptional regulator
JM955_RS23475	COG0281	malic enzyme
JM955_RS23480	COG0587	DNA-directed DNA polymerase activity
JM955_RS23495	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JM955_RS23510	COG4109	DRTGG domain
JM955_RS23525	COG0006	proline dipeptidase activity
JM955_RS23565	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS23570	COG0662	Cupin 2, conserved barrel domain protein
JM955_RS23585	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS23590	COG0589	response to stress
JM955_RS23630	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM955_RS23655	COG0827	DNA restriction-modification system
JM955_RS23660	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JM955_RS23665	COG3874	Sporulation protein YtfJ
JM955_RS23680	COG1574	metal-dependent hydrolase with the TIM-barrel fold
JM955_RS23690	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JM955_RS23705	COG1104	cysteine desulfurase activity
JM955_RS23725	COG1136	(ABC) transporter
JM955_RS23750	COG0583	DNA-binding transcription factor activity
JM955_RS23755	COG0697	spore germination
JM955_RS23760	COG1309	transcriptional regulator
JM955_RS23765	COG1956	GAF domain-containing protein
JM955_RS23770	COG0626	cystathionine gamma-synthase activity
JM955_RS23800	COG1595	DNA-templated transcription, initiation
JM955_RS23810	COG0110	maltose O-acetyltransferase activity
JM955_RS23815	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JM955_RS23820	COG0454	-acetyltransferase
JM955_RS23825	COG0517	IMP dehydrogenase activity
JM955_RS23830	COG0123	including yeast histone deacetylase and acetoin utilization protein
JM955_RS23835	COG2267	carboxylic ester hydrolase activity
JM955_RS23845	COG0745	RESPONSE REGULATOR receiver
JM955_RS23850	COG5002	protein histidine kinase activity
JM955_RS23855	COG0666	response to abiotic stimulus
JM955_RS23885	COG1609	Transcriptional regulator
JM955_RS23895	COG4851	CamS sex pheromone cAM373 precursor
JM955_RS23900	COG3118	belongs to the thioredoxin family
JM955_RS23910	COG2309	aminopeptidase activity
JM955_RS23925	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS23930	COG0697	spore germination
JM955_RS23935	COG0789	Transcriptional regulator
JM955_RS23950	COG1674	ftsk spoiiie
JM955_RS23955	COG0860	N-Acetylmuramoyl-L-alanine amidase
JM955_RS23965	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JM955_RS23975	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JM955_RS23980	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
JM955_RS23985	COG1363	Peptidase, m42
JM955_RS23995	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS24010	COG0510	thiamine kinase activity
JM955_RS24015	COG1523	belongs to the glycosyl hydrolase 13 family
JM955_RS24025	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JM955_RS24030	COG1349	DNA-binding transcription factor activity
JM955_RS24035	COG1187	pseudouridine synthase activity
JM955_RS24040	COG2244	polysaccharide biosynthetic process
JM955_RS24045	COG2081	HI0933 family
JM955_RS24050	COG2814	Major facilitator Superfamily
JM955_RS24060	COG3832	glyoxalase III activity
JM955_RS24080	COG1329	Transcriptional regulator
JM955_RS24105	COG0314	molybdopterin synthase activity
JM955_RS24110	COG1763	Mo-molybdopterin cofactor biosynthetic process
JM955_RS24115	COG0303	'Molybdopterin
JM955_RS24125	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JM955_RS24130	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JM955_RS24150	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JM955_RS24160	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JM955_RS24200	COG2814	Major facilitator Superfamily
JM955_RS24205	COG0475	glutathione-regulated potassium exporter activity
JM955_RS24210	COG0490	domain, Protein
JM955_RS24215	COG0582	viral genome integration into host DNA
JM955_RS24225	COG1136	(ABC) transporter
JM955_RS24245	COG1242	4 iron, 4 sulfur cluster binding
JM955_RS24250	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JM955_RS24265	COG1794	racemase activity, acting on amino acids and derivatives
JM955_RS24285	COG2267	carboxylic ester hydrolase activity
JM955_RS24290	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JM955_RS24295	COG0671	phosphoesterase, PA-phosphatase related
JM955_RS24300	COG0438	transferase activity, transferring glycosyl groups
JM955_RS24385	COG5002	protein histidine kinase activity
JM955_RS24390	COG3852	Histidine kinase
JM955_RS24395	COG0753	catalase activity
JM955_RS24400	COG2267	carboxylic ester hydrolase activity
JM955_RS24405	COG1368	sulfuric ester hydrolase activity
JM955_RS24430	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JM955_RS24435	COG1116	anion transmembrane transporter activity
JM955_RS24440	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JM955_RS24455	COG0546	phosphoglycolate phosphatase activity
JM955_RS24465	COG0494	nUDIX hydrolase
JM955_RS24495	COG1854	S-ribosylhomocysteine lyase activity
JM955_RS24505	COG0288	reversible hydration of carbon dioxide
JM955_RS24510	COG1271	oxidase subunit
JM955_RS24515	COG1294	oxidase, subunit
JM955_RS24530	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM955_RS24550	COG1842	Phage shock protein A
JM955_RS24575	COG3859	Proton-coupled thiamine transporter YuaJ
JM955_RS24580	COG5002	protein histidine kinase activity
JM955_RS24585	COG0745	RESPONSE REGULATOR receiver
JM955_RS24610	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JM955_RS24615	COG1597	lipid kinase activity
JM955_RS24645	COG0586	Pfam SNARE associated Golgi protein
JM955_RS24655	COG0577	efflux transmembrane transporter activity
JM955_RS24660	COG1136	(ABC) transporter
JM955_RS24665	COG2207	Transcriptional regulator
JM955_RS24665	COG3708	Transcriptional regulator
JM955_RS24675	COG5658	integral membrane protein
JM955_RS24680	COG0640	Transcriptional regulator
JM955_RS24685	COG0745	RESPONSE REGULATOR receiver
JM955_RS24690	COG2205	protein histidine kinase activity
JM955_RS24695	COG0577	efflux transmembrane transporter activity
JM955_RS24700	COG0577	efflux transmembrane transporter activity
JM955_RS24705	COG1136	(ABC) transporter
JM955_RS24710	COG0577	efflux transmembrane transporter activity
JM955_RS24735	COG2188	Transcriptional regulator
JM955_RS24755	COG3964	amidohydrolase
JM955_RS24775	COG4948	Mandelate Racemase Muconate Lactonizing
JM955_RS24785	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JM955_RS24790	COG0596	Alpha beta hydrolase
JM955_RS24800	COG1169	isochorismate synthase
JM955_RS24805	COG1575	Belongs to the MenA family. Type 1 subfamily
JM955_RS24810	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JM955_RS24815	COG1278	Cold shock
JM955_RS24840	COG0058	SHG alpha-glucan phosphorylase activity
JM955_RS24850	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JM955_RS24870	COG1404	Belongs to the peptidase S8 family
JM955_RS25005	COG1285	pathogenesis
JM955_RS25010	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JM955_RS25025	COG2155	Conserved Protein
JM955_RS25030	COG1098	S1 RNA binding domain
JM955_RS25035	COG0436	Aminotransferase
JM955_RS25040	COG1522	sequence-specific DNA binding
JM955_RS25045	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JM955_RS25050	COG2267	carboxylic ester hydrolase activity
JM955_RS25060	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JM955_RS25080	COG5018	Exonuclease
JM955_RS25085	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JM955_RS25105	COG2050	protein possibly involved in aromatic compounds catabolism
JM955_RS25115	COG1268	BioY protein
JM955_RS25125	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JM955_RS25130	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JM955_RS25150	COG2076	Multidrug Resistance protein
JM955_RS25155	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JM955_RS25165	COG3584	3D domain protein
JM955_RS25180	COG1252	NADH dehydrogenase
JM955_RS25190	COG3708	Transcriptional regulator
JM955_RS25205	COG1683	Conserved Protein
JM955_RS25215	COG4122	O-methyltransferase activity
JM955_RS25235	COG0316	Belongs to the HesB IscA family
JM955_RS25250	COG1252	NADH dehydrogenase
JM955_RS25265	COG0390	transport system, permease component
JM955_RS25270	COG2824	Alkylphosphonate utilization operon protein PhnA
JM955_RS25295	COG4837	Protein of unknown function (DUF1462)
JM955_RS25300	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
JM955_RS25310	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JM955_RS25315	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JM955_RS25335	COG1358	cellular component organization or biogenesis
JM955_RS25345	COG2249	NAD(P)H dehydrogenase (quinone) activity
JM955_RS25350	COG0647	UMP catabolic process
JM955_RS25360	COG2445	Protein of unknown function DUF86
JM955_RS25365	COG1494	fructose-1,6-bisphosphatase
JM955_RS25385	COG4470	Protein conserved in bacteria
JM955_RS25395	COG0789	Transcriptional regulator
JM955_RS25400	COG4377	Putative membrane peptidase family (DUF2324)
JM955_RS25425	COG0739	heme binding
JM955_RS25435	COG3377	Domain of unknown function (DUF1805)
JM955_RS25440	COG0737	Belongs to the 5'-nucleotidase family
JM955_RS25445	COG0719	Fe-S assembly protein
JM955_RS25450	COG0822	iron-sulfur transferase activity
JM955_RS25455	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JM955_RS25460	COG0719	Fe-S assembly protein
JM955_RS25465	COG0396	ATPase activity
JM955_RS25470	COG1464	Belongs to the NlpA lipoprotein family
JM955_RS25475	COG1464	Belongs to the NlpA lipoprotein family
JM955_RS25480	COG2011	ABC-type metal ion transport system permease component
JM955_RS25495	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JM955_RS25500	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JM955_RS25510	COG1393	Belongs to the ArsC family
JM955_RS25545	COG0039	L-malate dehydrogenase activity
JM955_RS25565	COG1309	transcriptional regulator
JM955_RS25570	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JM955_RS25575	COG1960	acyl-CoA dehydrogenase activity
JM955_RS25580	COG0183	Belongs to the thiolase family
JM955_RS25585	COG1250	3-hydroxyacyl-CoA dehydrogenase
JM955_RS25585	COG1024	Enoyl-CoA hydratase
JM955_RS25595	COG1686	Belongs to the peptidase S11 family
JM955_RS25610	COG0011	TIGRFAM Protein of
JM955_RS25615	COG0840	transmembrane signaling receptor activity
JM955_RS25630	COG2814	Major facilitator Superfamily
JM955_RS25635	COG0531	amino acid
JM955_RS25660	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JM955_RS25695	COG0586	Pfam SNARE associated Golgi protein
JM955_RS25705	COG1376	ErfK ybiS ycfS ynhG family protein
JM955_RS25710	COG0745	RESPONSE REGULATOR receiver
JM955_RS25715	COG5002	protein histidine kinase activity
JM955_RS25745	COG0840	transmembrane signaling receptor activity
JM955_RS25750	COG2151	metal-sulfur cluster biosynthetic enzyme
JM955_RS25755	COG3227	Zinc metalloprotease (Elastase)
JM955_RS25775	COG0586	Pfam SNARE associated Golgi protein
JM955_RS25780	COG0475	glutathione-regulated potassium exporter activity
JM955_RS25785	COG0490	domain, Protein
JM955_RS25790	COG1115	amino acid carrier protein
JM955_RS25795	COG0783	Belongs to the Dps family
JM955_RS25805	COG2318	DinB family
JM955_RS25815	COG1611	Belongs to the LOG family
JM955_RS25825	COG1528	Iron-storage protein
JM955_RS25835	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM955_RS25840	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM955_RS25845	COG1115	amino acid carrier protein
JM955_RS25850	COG1115	amino acid carrier protein
JM955_RS25855	COG2910	NAD(P)H-binding
JM955_RS25870	COG0656	L-ascorbic acid biosynthetic process
JM955_RS25875	COG2814	Major facilitator Superfamily
JM955_RS25880	COG1733	regulation of RNA biosynthetic process
JM955_RS25890	COG1252	NADH dehydrogenase
JM955_RS25895	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JM955_RS25940	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JM955_RS25955	COG1335	isochorismatase
JM955_RS25960	COG1522	sequence-specific DNA binding
JM955_RS25970	COG1522	sequence-specific DNA binding
JM955_RS25975	COG0288	reversible hydration of carbon dioxide
JM955_RS25980	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
JM955_RS25985	COG2233	PERMEase
JM955_RS26030	COG0557	exoribonuclease II activity
JM955_RS26035	COG1647	Serine aminopeptidase, S33
JM955_RS26040	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JM955_RS26045	COG1346	cytolysis
JM955_RS26080	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JM955_RS26095	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JM955_RS26105	COG1668	transmembrane transport
JM955_RS26110	COG4152	abc transporter atp-binding protein
JM955_RS26115	COG4585	Histidine kinase
JM955_RS26175	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JM955_RS26190	COG2323	membrane
JM955_RS26200	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JM955_RS26210	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JM955_RS26220	COG1051	belongs to the nudix hydrolase family
JM955_RS26230	COG0492	ferredoxin-NADP+ reductase activity
JM955_RS26235	COG0457	Tetratricopeptide repeat
JM955_RS26240	COG0110	maltose O-acetyltransferase activity
JM955_RS26260	COG1950	PFAM Membrane protein of
JM955_RS26265	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JM955_RS26285	COG0789	Transcriptional regulator
JM955_RS26305	COG0583	DNA-binding transcription factor activity
JM955_RS26315	COG0655	NAD(P)H dehydrogenase (quinone) activity
JM955_RS26320	COG0488	(ABC) transporter
JM955_RS26330	COG1132	(ABC) transporter
JM955_RS26335	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JM955_RS26340	COG3409	Peptidoglycan-binding domain 1 protein
JM955_RS26340	COG0793	Belongs to the peptidase S41A family
JM955_RS26345	COG2177	Part of the ABC transporter FtsEX involved in
JM955_RS26350	COG2884	Cell division ATP-binding protein ftsE
JM955_RS26375	COG1131	(ABC) transporter
JM955_RS26405	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JM955_RS26410	COG1278	Cold shock
JM955_RS26415	COG1040	competence protein
JM955_RS26420	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
JM955_RS26425	COG0791	NLP P60 protein
JM955_RS26425	COG1388	LysM domain
JM955_RS26430	COG1733	regulation of RNA biosynthetic process
JM955_RS26435	COG1307	EDD domain protein, DegV family
JM955_RS26440	COG1739	Uncharacterized protein family UPF0029
JM955_RS26445	COG1316	TRANSCRIPTIONal
JM955_RS26450	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JM955_RS26455	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JM955_RS26460	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JM955_RS26470	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JM955_RS26470	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JM955_RS26490	COG1486	melibiose metabolic process
JM955_RS26495	COG1447	Phosphotransferase system cellobiose-specific component IIA
JM955_RS26500	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JM955_RS26510	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JM955_RS26520	COG1447	Phosphotransferase system cellobiose-specific component IIA
JM955_RS26530	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JM955_RS26535	COG1301	dicarboxylic acid transport
JM955_RS26550	COG1511	domain protein
JM955_RS26555	COG0583	DNA-binding transcription factor activity
JM955_RS26560	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JM955_RS26570	COG1271	oxidase subunit
JM955_RS26575	COG1294	oxidase, subunit
JM955_RS26580	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JM955_RS26590	COG1620	l-lactate permease
JM955_RS26600	COG2389	metal-binding protein
JM955_RS26610	COG1368	sulfuric ester hydrolase activity
JM955_RS26620	COG0791	NLP P60 protein
JM955_RS26620	COG1388	LysM domain
JM955_RS26625	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JM955_RS26635	COG1215	transferase activity, transferring glycosyl groups
JM955_RS26640	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JM955_RS26645	COG1388	LysM domain
JM955_RS26645	COG3584	3D domain protein
JM955_RS26670	COG4715	Zinc finger, swim domain protein
JM955_RS26675	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JM955_RS26715	COG0577	efflux transmembrane transporter activity
JM955_RS26720	COG1136	(ABC) transporter
JM955_RS26745	COG5002	protein histidine kinase activity
JM955_RS26750	COG0745	RESPONSE REGULATOR receiver
JM955_RS26755	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JM955_RS26760	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JM955_RS26770	COG1316	TRANSCRIPTIONal
JM955_RS26780	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JM955_RS26795	COG0438	transferase activity, transferring glycosyl groups
JM955_RS26800	COG1215	transferase activity, transferring glycosyl groups
JM955_RS26805	COG0438	transferase activity, transferring glycosyl groups
JM955_RS26820	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JM955_RS26825	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JM955_RS26830	COG1086	Polysaccharide biosynthesis protein
JM955_RS26835	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JM955_RS26840	COG4464	protein tyrosine phosphatase activity
JM955_RS26845	COG0489	protein tyrosine kinase activity
JM955_RS26850	COG3944	biosynthesis protein
JM955_RS26855	COG0489	protein tyrosine kinase activity
JM955_RS26870	COG1609	Transcriptional regulator
JM955_RS26880	COG0739	heme binding
JM955_RS26895	COG3279	Response regulator of the LytR AlgR family
JM955_RS26900	COG2385	sporulation resulting in formation of a cellular spore
JM955_RS26915	COG4836	Membrane
JM955_RS26920	COG1007	ATP synthesis coupled electron transport
JM955_RS26925	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JM955_RS26930	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JM955_RS26940	COG0839	Belongs to the complex I subunit 6 family
JM955_RS26960	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JM955_RS26975	COG3300	MHYT domain
JM955_RS26975	COG5001	Diguanylate cyclase
JM955_RS27025	COG0356	it plays a direct role in the translocation of protons across the membrane
JM955_RS27060	COG0698	ribose 5-phosphate isomerase
JM955_RS27070	COG2190	(PTS) system
JM955_RS27075	COG2259	Doxx family
JM955_RS27080	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JM955_RS27095	COG0009	L-threonylcarbamoyladenylate synthase
JM955_RS27130	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JM955_RS27135	COG1494	fructose-1,6-bisphosphatase
JM955_RS27155	COG4821	SIS domain
JM955_RS27165	COG3343	RNA polymerase activity
JM955_RS27175	COG1960	acyl-CoA dehydrogenase activity
JM955_RS27180	COG1960	acyl-CoA dehydrogenase activity
JM955_RS27185	COG1250	3-hydroxyacyl-CoA dehydrogenase
JM955_RS27190	COG0183	Belongs to the thiolase family
JM955_RS27195	COG2181	nitrate reductase activity
JM955_RS27195	COG0247	lactate metabolic process
JM955_RS27200	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JM955_RS27210	COG5001	Diguanylate cyclase
JM955_RS27210	COG3300	MHYT domain
JM955_RS27225	COG3227	Zinc metalloprotease (Elastase)
JM955_RS27230	COG2197	response regulator
JM955_RS27235	COG4585	Histidine kinase
JM955_RS27240	COG0842	Transport permease protein
JM955_RS27245	COG1131	(ABC) transporter
JM955_RS27250	COG0024	Methionine aminopeptidase
JM955_RS27260	COG2234	aminopeptidase activity
JM955_RS27280	COG1595	DNA-templated transcription, initiation
JM955_RS27290	COG4506	Protein conserved in bacteria
JM955_RS27295	COG1619	proteins homologs of microcin C7 resistance protein MccF
JM955_RS27320	COG2814	Major facilitator Superfamily
JM955_RS27325	COG0789	Transcriptional regulator
JM955_RS27330	COG0584	glycerophosphoryl diester phosphodiesterase
JM955_RS27335	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JM955_RS27345	COG1994	Peptidase M50
JM955_RS27355	COG1078	dGTPase activity
JM955_RS27360	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JM955_RS27365	COG1120	ATPase activity
JM955_RS27370	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM955_RS27375	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JM955_RS27395	COG0280	phosphate acetyltransferase
JM955_RS27410	COG3773	Cell wall hydrolase
JM955_RS27420	COG2363	Small membrane protein
JM955_RS27430	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JM955_RS27435	COG2233	PERMEase
JM955_RS27440	COG0561	phosphatase activity
JM955_RS27445	COG2814	Major facilitator Superfamily
JM955_RS27455	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JM955_RS27460	COG1131	(ABC) transporter
JM955_RS27465	COG2755	lipolytic protein G-D-S-L family
JM955_RS27470	COG1609	Transcriptional regulator
JM955_RS27480	COG0460	homoserine dehydrogenase
JM955_RS27490	COG2873	o-acetylhomoserine
JM955_RS27500	COG1011	Hydrolase
JM955_RS27505	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JM955_RS27515	COG2197	response regulator
JM955_RS27520	COG4585	Histidine kinase
JM955_RS27520	COG2203	Gaf domain
JM955_RS27525	COG0351	phosphomethylpyrimidine kinase
JM955_RS27530	COG3706	GGDEF domain
JM955_RS27535	COG2879	small protein
JM955_RS27540	COG1966	Carbon starvation protein
JM955_RS27545	COG3279	Response regulator of the LytR AlgR family
JM955_RS27550	COG0477	Major facilitator Superfamily
JM955_RS27560	COG0438	transferase activity, transferring glycosyl groups
JM955_RS27575	COG0840	transmembrane signaling receptor activity
JM955_RS27585	COG1607	acyl-coa hydrolase
JM955_RS27590	COG1216	Glycosyl transferase, family 2
JM955_RS27600	COG1216	Glycosyl transferase, family 2
JM955_RS27610	COG4485	Bacterial membrane protein, YfhO
JM955_RS27615	COG0463	Glycosyl transferase, family 2
JM955_RS27625	COG1309	transcriptional regulator
JM955_RS27630	COG0488	(ABC) transporter
JM955_RS27635	COG1309	transcriptional regulator
JM955_RS27640	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JM955_RS27645	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JM955_RS27645	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JM955_RS27650	COG0628	permease
JM955_RS27670	COG3275	phosphorelay sensor kinase activity
JM955_RS27675	COG2814	Major facilitator Superfamily
JM955_RS27680	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JM955_RS27685	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
JM955_RS27705	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JM955_RS27710	COG1272	protein, Hemolysin III
JM955_RS27730	COG1164	Oligoendopeptidase f
JM955_RS27740	COG5002	protein histidine kinase activity
JM955_RS27755	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JM955_RS27760	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JM955_RS27765	COG4853	Protein conserved in bacteria
JM955_RS27775	COG5002	protein histidine kinase activity
JM955_RS27780	COG0745	RESPONSE REGULATOR receiver
JM955_RS27810	COG0305	Participates in initiation and elongation during chromosome replication
JM955_RS27820	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
JM955_RS27825	COG4241	membrane
JM955_RS27835	COG0629	single-stranded DNA binding
JM955_RS27845	COG0012	GTP binding
JM955_RS27850	COG4481	Protein conserved in bacteria
JM955_RS27855	COG0668	transmembrane transport
JM955_RS27865	COG1475	DNA binding
JM955_RS27870	COG1192	Involved in chromosome partitioning
JM955_RS27895	COG1847	R3H domain protein
JM955_RS27910	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JM955_RS28010	COG2311	Membrane
JM955_RS28055	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
JM955_RS28060	COG0583	DNA-binding transcription factor activity
JM955_RS28080	COG0577	efflux transmembrane transporter activity
JM955_RS28085	COG1136	(ABC) transporter
JM955_RS28090	COG2205	protein histidine kinase activity
JM955_RS28095	COG0745	RESPONSE REGULATOR receiver
JM955_RS28125	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JM955_RS28150	COG1819	glycosyl
JM955_RS28200	COG0776	regulation of translation
JM955_RS28205	COG2002	toxin-antitoxin pair type II binding
JM955_RS28235	COG0697	spore germination
JM955_RS28240	COG1802	Transcriptional regulator
JM955_RS28245	COG0697	spore germination
JM955_RS28255	COG2211	Major facilitator Superfamily
JM955_RS28260	COG2366	antibiotic biosynthetic process
JM955_RS28300	COG2423	ornithine cyclodeaminase activity
JM955_RS28315	COG0776	regulation of translation
JM955_RS28320	COG2002	toxin-antitoxin pair type II binding
JM955_RS28325	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JM955_RS28330	COG0438	transferase activity, transferring glycosyl groups
JM955_RS28335	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JM955_RS28350	COG0438	transferase activity, transferring glycosyl groups
JM955_RS28355	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JM955_RS28360	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JM955_RS28365	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JM955_RS28375	COG3104	oligopeptide transport
JM955_RS28385	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JM955_RS28395	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS28420	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM955_RS28530	COG5634	Uncharacterized conserved protein (DUF2278)
JM955_RS28535	COG1404	Belongs to the peptidase S8 family
JM955_RS28535	COG4935	Belongs to the peptidase S8 family
JM955_RS28545	COG1404	Belongs to the peptidase S8 family
JM955_RS28580	COG2304	oxidoreductase activity
JM955_RS28585	COG1309	transcriptional regulator
JM955_RS28590	COG2814	Major facilitator Superfamily
JM955_RS28600	COG1760	l-serine dehydratase
JM955_RS28605	COG1760	l-serine dehydratase
JM955_RS28615	COG0814	amino acid
JM955_RS28625	COG0840	transmembrane signaling receptor activity
JM955_RS28645	COG1309	transcriptional regulator
JM955_RS28655	COG0456	acetyltransferase
JM955_RS28665	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JM955_RS28670	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JM955_RS28675	COG0772	Belongs to the SEDS family
JM955_RS28680	COG2239	Acts as a magnesium transporter
JM955_RS28745	COG4974	Belongs to the 'phage' integrase family
JM955_RS28755	COG1404	Belongs to the peptidase S8 family
JM955_RS28770	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JM955_RS28770	COG5549	protein import
JM955_RS28810	COG2259	Doxx family
JM955_RS28815	COG0318	PFAM AMP-dependent synthetase and ligase
JM955_RS28840	COG2814	Major facilitator Superfamily
JM955_RS28870	COG4641	Protein conserved in bacteria
JM955_RS28885	COG2089	acid synthase
JM955_RS28900	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
JM955_RS28905	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JM955_RS28910	COG1088	dTDP-glucose 4,6-dehydratase activity
JM955_RS28915	COG1086	Polysaccharide biosynthesis protein
JM955_RS28920	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JM955_RS28925	COG0463	Glycosyl transferase, family 2
JM955_RS28930	COG0463	Glycosyl transferase, family 2
JM955_RS28940	COG0457	Tetratricopeptide repeat
JM955_RS28970	COG0494	nUDIX hydrolase
JM955_RS28980	COG4974	Belongs to the 'phage' integrase family
JM955_RS29020	COG0457	Tetratricopeptide repeat
JM955_RS29035	COG2318	DinB family
JM955_RS29185	COG1475	DNA binding
JM955_RS29205	COG0738	Major facilitator superfamily
JM955_RS29210	COG0673	inositol 2-dehydrogenase activity
JM955_RS29215	COG0561	phosphatase activity
JM955_RS29220	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JM955_RS29225	COG1609	Transcriptional regulator
JM955_RS29260	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JM955_RS29265	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JM955_RS29265	COG0318	PFAM AMP-dependent synthetase and ligase
JM955_RS29265	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS29265	COG3321	synthase
JM955_RS29265	COG0300	oxidoreductase activity
JM955_RS29280	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JM955_RS29285	COG1250	3-hydroxyacyl-CoA dehydrogenase
JM955_RS29300	COG1960	acyl-CoA dehydrogenase activity
JM955_RS29320	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JM955_RS29320	COG0318	PFAM AMP-dependent synthetase and ligase
JM955_RS29320	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS29320	COG3321	synthase
JM955_RS29320	COG0300	oxidoreductase activity
JM955_RS29320	COG0318	PFAM AMP-dependent synthetase and ligase
JM955_RS29320	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JM955_RS29320	COG1028	Short-chain dehydrogenase reductase Sdr
JM955_RS29320	COG3321	synthase
JM955_RS29320	COG0300	oxidoreductase activity
JM955_RS29340	COG0667	Aldo Keto reductase
JM955_RS29355	COG3391	amine dehydrogenase activity
JM955_RS29370	COG1396	sequence-specific DNA binding
JM955_RS29395	COG0210	DNA helicase
JM955_RS29400	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JM955_RS29415	COG1204	response to ionizing radiation
JM955_RS29480	COG0210	DNA helicase
JM955_RS29525	COG0457	Tetratricopeptide repeat
JM955_RS29535	COG0456	acetyltransferase
JM955_RS29535	COG1846	Transcriptional regulator
JM955_RS29575	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JM955_RS29580	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM955_RS29580	COG3409	Peptidoglycan-binding domain 1 protein
JM955_RS29625	COG0367	asparagine synthase
JM955_RS29630	COG1309	transcriptional regulator
JM955_RS29660	COG1396	sequence-specific DNA binding
JM955_RS29685	COG2274	protein secretion by the type I secretion system
JM955_RS29765	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM955_RS29780	COG1388	LysM domain
JM955_RS29780	COG5632	N-Acetylmuramoyl-L-alanine amidase
JM955_RS29780	COG3409	Peptidoglycan-binding domain 1 protein
JM955_RS29785	COG0739	heme binding
JM955_RS29790	COG0741	lytic transglycosylase activity
JM955_RS29820	COG5634	Uncharacterized conserved protein (DUF2278)
JM955_RS29825	COG2234	aminopeptidase activity
JM955_RS29870	COG0463	Glycosyl transferase, family 2
JM955_RS29905	COG0542	response to heat
JM955_RS29910	COG0494	nUDIX hydrolase
JM955_RS29925	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JM955_RS29935	COG0457	Tetratricopeptide repeat
JM955_RS30180	COG1361	Conserved repeat domain
JM955_RS30320	COG2211	Major facilitator Superfamily
JM955_RS30340	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins