BF28_RS00360 SM01251 BF28_RS00360 BF28_RS00505 SM00663 RNA polymerase I subunit A N-terminus BF28_RS01180 SM00267 diguanylate cyclase BF28_RS01275 SM00490 helicase superfamily c-terminal domain BF28_RS01915 SM00357 Cold shock protein domain BF28_RS02040 SM00052 Putative diguanylate phosphodiesterase BF28_RS02040 SM00267 diguanylate cyclase BF28_RS02615 SM01251 BF28_RS02615 BF28_RS02630 SM00646 BF28_RS02630 BF28_RS02660 SM00382 ATPases associated with a variety of cellular activities BF28_RS02665 SM00382 ATPases associated with a variety of cellular activities BF28_RS02675 SM00662 RNA polymerases D BF28_RS02695 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_RS02755 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF28_RS02760 SM01374 BF28_RS02760 BF28_RS02780 SM00322 K homology RNA-binding domain BF28_RS02795 SM01382 BF28_RS02795 BF28_RS02795 SM01383 BF28_RS02795 BF28_RS02815 SM01403 BF28_RS02815 BF28_RS02825 SM00838 Elongation factor G C-terminus BF28_RS02825 SM00889 Elongation factor G, domain IV BF28_RS02845 SM00663 RNA polymerase I subunit A N-terminus BF28_RS02875 SM00649 Ribosomal protein L11/L12 BF28_RS02880 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF28_RS02895 SM00421 helix_turn_helix, Lux Regulon BF28_RS02905 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF28_RS02910 SM00535 Ribonuclease III family BF28_RS02915 SM00840 BF28_RS02915 BF28_RS02940 SM00670 Large family of predicted nucleotide-binding domains BF28_RS02950 SM00382 ATPases associated with a variety of cellular activities BF28_RS02955 SM00382 ATPases associated with a variety of cellular activities BF28_RS02955 SM01086 C-terminal, D2-small domain, of ClpB protein BF28_RS03060 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS03070 SM00905 Dihydroneopterin aldolase BF28_RS03110 SM00382 ATPases associated with a variety of cellular activities BF28_RS03120 SM00977 TilS substrate C-terminal domain BF28_RS03125 SM00331 Sigma factor PP2C-like phosphatases BF28_RS03125 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF28_RS03140 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_RS03160 SM00363 S4 RNA-binding domain BF28_RS03175 SM00966 SpoVT / AbrB like domain BF28_RS03180 SM00487 DEAD-like helicases superfamily BF28_RS03180 SM00490 helicase superfamily c-terminal domain BF28_RS03180 SM00982 BF28_RS03180 BF28_RS03180 SM01058 CarD-like/TRCF domain BF28_RS03195 SM01400 BF28_RS03195 BF28_RS03240 SM00650 Ribosomal RNA adenine dimethylases BF28_RS03245 SM00493 BF28_RS03245 BF28_RS03260 SM00966 SpoVT / AbrB like domain BF28_RS03335 SM00493 BF28_RS03335 BF28_RS03345 SM00382 ATPases associated with a variety of cellular activities BF28_RS03400 SM00936 Penicillin-binding protein 5, C-terminal domain BF28_RS03405 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_RS03405 SM01240 BF28_RS03405 BF28_RS03440 SM00434 DNA Topoisomerase IV BF28_RS03445 SM00387 Histidine kinase-like ATPases BF28_RS03445 SM00433 TopoisomeraseII BF28_RS03460 SM00480 DNA polymerase III beta subunit BF28_RS03465 SM00382 ATPases associated with a variety of cellular activities BF28_RS03465 SM00760 Bacterial dnaA protein helix-turn-helix domain BF28_RS03485 SM00393 Putative single-stranded nucleic acids-binding domain BF28_RS03485 SM01245 BF28_RS03485 BF28_RS03495 SM01228 BF28_RS03495 BF28_RS03505 SM00470 ParB-like nuclease domain BF28_RS03515 SM00470 ParB-like nuclease domain BF28_RS03560 SM00267 diguanylate cyclase BF28_RS03575 SM00788 Adenylosuccinate synthetase BF28_RS03600 SM00448 cheY-homologous receiver domain BF28_RS03600 SM00862 Transcriptional regulatory protein, C terminal BF28_RS03605 SM00091 PAS domain BF28_RS03605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS03605 SM00387 Histidine kinase-like ATPases BF28_RS03605 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS03620 SM00849 Metallo-beta-lactamase superfamily BF28_RS03625 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_RS03660 SM01240 BF28_RS03660 BF28_RS03670 SM00487 DEAD-like helicases superfamily BF28_RS03670 SM00490 helicase superfamily c-terminal domain BF28_RS03725 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF28_RS03725 SM00387 Histidine kinase-like ATPases BF28_RS03730 SM00448 cheY-homologous receiver domain BF28_RS03730 SM00850 LytTr DNA-binding domain BF28_RS03785 SM00382 ATPases associated with a variety of cellular activities BF28_RS03810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS03840 SM00448 cheY-homologous receiver domain BF28_RS03840 SM00850 LytTr DNA-binding domain BF28_RS03855 SM00267 diguanylate cyclase BF28_RS03865 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF28_RS03870 SM00421 helix_turn_helix, Lux Regulon BF28_RS03870 SM00448 cheY-homologous receiver domain BF28_RS03880 SM00100 Cyclic nucleotide-monophosphate binding domain BF28_RS03910 SM00354 helix_turn _helix lactose operon repressor BF28_RS03920 SM00382 ATPases associated with a variety of cellular activities BF28_RS03930 SM00986 Uracil DNA glycosylase superfamily BF28_RS03930 SM00987 UreE urease accessory protein, C-terminal domain BF28_RS03975 SM00936 Penicillin-binding protein 5, C-terminal domain BF28_RS04020 SM00382 ATPases associated with a variety of cellular activities BF28_RS04030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_RS04060 SM00422 helix_turn_helix, mercury resistance BF28_RS04105 SM00836 DALR anticodon binding domain BF28_RS04105 SM01016 Arginyl tRNA synthetase N terminal dom BF28_RS04145 SM00382 ATPases associated with a variety of cellular activities BF28_RS04160 SM00421 helix_turn_helix, Lux Regulon BF28_RS04160 SM00448 cheY-homologous receiver domain BF28_RS04165 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS04175 SM00052 Putative diguanylate phosphodiesterase BF28_RS04175 SM00267 diguanylate cyclase BF28_RS04185 SM00155 Phospholipase D. Active site motifs. BF28_RS04235 SM00448 cheY-homologous receiver domain BF28_RS04255 SM00357 Cold shock protein domain BF28_RS04255 SM00382 ATPases associated with a variety of cellular activities BF28_RS04255 SM00959 Rho termination factor, N-terminal domain BF28_RS04270 SM00937 BF28_RS04270 BF28_RS04310 SM00903 Flavin reductase like domain BF28_RS04325 SM00226 Low molecular weight phosphatase family BF28_RS04395 SM00382 ATPases associated with a variety of cellular activities BF28_RS04415 SM00052 Putative diguanylate phosphodiesterase BF28_RS04415 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF28_RS04415 SM00091 PAS domain BF28_RS04415 SM00267 diguanylate cyclase BF28_RS04495 SM00850 LytTr DNA-binding domain BF28_RS04500 SM00382 ATPases associated with a variety of cellular activities BF28_RS04595 SM00984 UDP binding domain BF28_RS04605 SM00382 ATPases associated with a variety of cellular activities BF28_RS04635 SM00448 cheY-homologous receiver domain BF28_RS04635 SM00862 Transcriptional regulatory protein, C terminal BF28_RS04640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS04640 SM00387 Histidine kinase-like ATPases BF28_RS04640 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS04665 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS04675 SM00382 ATPases associated with a variety of cellular activities BF28_RS04725 SM00487 DEAD-like helicases superfamily BF28_RS04725 SM00490 helicase superfamily c-terminal domain BF28_RS04755 SM00287 Bacterial SH3 domain homologues BF28_RS04785 SM00287 Bacterial SH3 domain homologues BF28_RS04945 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF28_RS04950 SM00382 ATPases associated with a variety of cellular activities BF28_RS04965 SM00984 UDP binding domain BF28_RS05005 SM00487 DEAD-like helicases superfamily BF28_RS05005 SM00490 helicase superfamily c-terminal domain BF28_RS05015 SM00357 Cold shock protein domain BF28_RS05025 SM00957 SecA DEAD-like domain BF28_RS05025 SM00958 SecA preprotein cross-linking domain BF28_RS05030 SM00937 BF28_RS05030 BF28_RS05045 SM00382 ATPases associated with a variety of cellular activities BF28_RS05055 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_RS05055 SM00245 tail specific protease BF28_RS05065 SM00382 ATPases associated with a variety of cellular activities BF28_RS05075 SM00382 ATPases associated with a variety of cellular activities BF28_RS05085 SM00422 helix_turn_helix, mercury resistance BF28_RS05100 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS05125 SM00422 helix_turn_helix, mercury resistance BF28_RS05135 SM00487 DEAD-like helicases superfamily BF28_RS05135 SM00490 helicase superfamily c-terminal domain BF28_RS05175 SM00028 Tetratricopeptide repeats BF28_RS05265 SM00028 Tetratricopeptide repeats BF28_RS05300 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF28_RS05320 SM01192 BF28_RS05320 BF28_RS05320 SM01193 BF28_RS05320 BF28_RS05350 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_RS05350 SM00357 Cold shock protein domain BF28_RS05350 SM00955 BF28_RS05350 BF28_RS05360 SM00448 cheY-homologous receiver domain BF28_RS05360 SM00862 Transcriptional regulatory protein, C terminal BF28_RS05380 SM00382 ATPases associated with a variety of cellular activities BF28_RS05390 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS05440 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS05445 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF28_RS05455 SM00363 S4 RNA-binding domain BF28_RS05490 SM01276 BF28_RS05490 BF28_RS05580 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS05600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS05600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS05605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS05605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS05625 SM00387 Histidine kinase-like ATPases BF28_RS05625 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS05630 SM00448 cheY-homologous receiver domain BF28_RS05630 SM00862 Transcriptional regulatory protein, C terminal BF28_RS05655 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS05675 SM00382 ATPases associated with a variety of cellular activities BF28_RS05690 SM00448 cheY-homologous receiver domain BF28_RS05690 SM00862 Transcriptional regulatory protein, C terminal BF28_RS05695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS05695 SM00387 Histidine kinase-like ATPases BF28_RS05695 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS05760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS05760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS05805 SM00849 Metallo-beta-lactamase superfamily BF28_RS05815 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS05880 SM00493 BF28_RS05880 BF28_RS05900 SM00382 ATPases associated with a variety of cellular activities BF28_RS05900 SM00930 BF28_RS05900 BF28_RS05920 SM00382 ATPases associated with a variety of cellular activities BF28_RS05965 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_RS05975 SM00855 Phosphoglycerate mutase family BF28_RS05990 SM00422 helix_turn_helix, mercury resistance BF28_RS06105 SM00382 ATPases associated with a variety of cellular activities BF28_RS06165 SM00871 Bacterial transcription activator, effector binding domain BF28_RS06255 SM00479 BF28_RS06255 BF28_RS06260 SM01298 BF28_RS06260 BF28_RS06305 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_RS06480 SM00642 Alpha-amylase domain BF28_RS06520 SM00357 Cold shock protein domain BF28_RS06560 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF28_RS06565 SM00448 cheY-homologous receiver domain BF28_RS06565 SM00862 Transcriptional regulatory protein, C terminal BF28_RS06570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS06570 SM00387 Histidine kinase-like ATPases BF28_RS06570 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS06615 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS06615 SM00866 BF28_RS06615 BF28_RS06635 SM00382 ATPases associated with a variety of cellular activities BF28_RS06650 SM00387 Histidine kinase-like ATPases BF28_RS06655 SM00448 cheY-homologous receiver domain BF28_RS06655 SM00862 Transcriptional regulatory protein, C terminal BF28_RS06660 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS06670 SM00382 ATPases associated with a variety of cellular activities BF28_RS06680 SM00342 helix_turn_helix, arabinose operon control protein BF28_RS06680 SM00871 Bacterial transcription activator, effector binding domain BF28_RS06685 SM00382 ATPases associated with a variety of cellular activities BF28_RS06700 SM00342 helix_turn_helix, arabinose operon control protein BF28_RS06735 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF28_RS06765 SM00448 cheY-homologous receiver domain BF28_RS06765 SM00862 Transcriptional regulatory protein, C terminal BF28_RS06770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS06770 SM00387 Histidine kinase-like ATPases BF28_RS06770 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS06780 SM00899 BF28_RS06780 BF28_RS06835 SM00894 Excalibur calcium-binding domain BF28_RS06855 SM00947 Carbonic anhydrase BF28_RS06860 SM01234 BF28_RS06860 BF28_RS06915 SM00382 ATPases associated with a variety of cellular activities BF28_RS06945 SM00387 Histidine kinase-like ATPases BF28_RS06945 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS06950 SM00387 Histidine kinase-like ATPases BF28_RS06960 SM00420 helix_turn_helix, Deoxyribose operon repressor BF28_RS06960 SM01134 BF28_RS06960 BF28_RS07030 SM00852 Probable molybdopterin binding domain BF28_RS07045 SM00014 Acid phosphatase homologues BF28_RS07100 SM00382 ATPases associated with a variety of cellular activities BF28_RS07110 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_RS07130 SM00382 ATPases associated with a variety of cellular activities BF28_RS07215 SM00450 Rhodanese Homology Domain BF28_RS07235 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_RS07250 SM00852 Probable molybdopterin binding domain BF28_RS07285 SM01058 CarD-like/TRCF domain BF28_RS07310 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS07330 SM00363 S4 RNA-binding domain BF28_RS07335 SM00420 helix_turn_helix, Deoxyribose operon repressor BF28_RS07355 SM00642 Alpha-amylase domain BF28_RS07375 SM00849 Metallo-beta-lactamase superfamily BF28_RS07415 SM00843 BF28_RS07415 BF28_RS07490 SM00354 helix_turn _helix lactose operon repressor BF28_RS07525 SM00248 ankyrin repeats BF28_RS07530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS07530 SM00387 Histidine kinase-like ATPases BF28_RS07530 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS07535 SM00448 cheY-homologous receiver domain BF28_RS07535 SM00862 Transcriptional regulatory protein, C terminal BF28_RS07555 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_RS07585 SM00363 S4 RNA-binding domain BF28_RS07635 SM00363 S4 RNA-binding domain BF28_RS07635 SM01390 BF28_RS07635 BF28_RS07675 SM00981 BF28_RS07675 BF28_RS07790 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF28_RS07790 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF28_RS07800 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS07855 SM00849 Metallo-beta-lactamase superfamily BF28_RS07865 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_RS07905 SM00481 DNA polymerase alpha chain like domain BF28_RS07910 SM00919 Malic enzyme, NAD binding domain BF28_RS07910 SM01274 BF28_RS07910 BF28_RS07915 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS07965 SM01329 BF28_RS07965 BF28_RS07985 SM00448 cheY-homologous receiver domain BF28_RS07985 SM00862 Transcriptional regulatory protein, C terminal BF28_RS07990 SM00091 PAS domain BF28_RS07990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS07990 SM00387 Histidine kinase-like ATPases BF28_RS07990 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS07995 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF28_RS07995 SM00474 3'-5' exonuclease BF28_RS07995 SM00475 5'-3' exonuclease BF28_RS07995 SM00482 DNA polymerase A domain BF28_RS08000 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF28_RS08000 SM01232 BF28_RS08000 BF28_RS08015 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF28_RS08040 SM00382 ATPases associated with a variety of cellular activities BF28_RS08050 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF28_RS08115 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF28_RS08125 SM00873 B3/4 domain BF28_RS08125 SM00874 tRNA synthetase B5 domain BF28_RS08125 SM00896 Ferredoxin-fold anticodon binding domain BF28_RS08165 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF28_RS08165 SM00481 DNA polymerase alpha chain like domain BF28_RS08165 SM00483 DNA polymerase X family BF28_RS08170 SM00463 Small MutS-related domain BF28_RS08170 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF28_RS08170 SM00534 ATPase domain of DNA mismatch repair MUTS family BF28_RS08180 SM00363 S4 RNA-binding domain BF28_RS08190 SM00725 NEAr Transporter domain BF28_RS08195 SM00725 NEAr Transporter domain BF28_RS08210 SM00382 ATPases associated with a variety of cellular activities BF28_RS08230 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF28_RS08245 SM00448 cheY-homologous receiver domain BF28_RS08245 SM00862 Transcriptional regulatory protein, C terminal BF28_RS08250 SM00387 Histidine kinase-like ATPases BF28_RS08250 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS08255 SM00382 ATPases associated with a variety of cellular activities BF28_RS08310 SM00893 Electron transfer flavoprotein domain BF28_RS08315 SM00893 Electron transfer flavoprotein domain BF28_RS08325 SM00465 GIY-YIG type nucleases (URI domain) BF28_RS08375 SM00382 ATPases associated with a variety of cellular activities BF28_RS08400 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS08415 SM00342 helix_turn_helix, arabinose operon control protein BF28_RS08415 SM00448 cheY-homologous receiver domain BF28_RS08425 SM00382 ATPases associated with a variety of cellular activities BF28_RS08430 SM00382 ATPases associated with a variety of cellular activities BF28_RS08470 SM00421 helix_turn_helix, Lux Regulon BF28_RS08485 SM00909 Sporulation and spore germination BF28_RS08525 SM00857 Resolvase, N terminal domain BF28_RS08595 SM00382 ATPases associated with a variety of cellular activities BF28_RS08595 SM00994 ClpX C4-type zinc finger BF28_RS08595 SM01086 C-terminal, D2-small domain, of ClpB protein BF28_RS08600 SM00382 ATPases associated with a variety of cellular activities BF28_RS08605 SM00382 ATPases associated with a variety of cellular activities BF28_RS08605 SM00464 Found in ATP-dependent protease La (LON) BF28_RS08620 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS08645 SM01004 Delta-aminolevulinic acid dehydratase BF28_RS08655 SM00257 Lysin motif BF28_RS08745 SM01317 BF28_RS08745 BF28_RS08755 SM00448 cheY-homologous receiver domain BF28_RS08755 SM00862 Transcriptional regulatory protein, C terminal BF28_RS08760 SM00387 Histidine kinase-like ATPases BF28_RS08765 SM00382 ATPases associated with a variety of cellular activities BF28_RS08815 SM00257 Lysin motif BF28_RS08830 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS08850 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF28_RS08855 SM00382 ATPases associated with a variety of cellular activities BF28_RS08875 SM01323 BF28_RS08875 BF28_RS08920 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_RS08920 SM00954 Region found in RelA / SpoT proteins BF28_RS08960 SM00382 ATPases associated with a variety of cellular activities BF28_RS08980 SM00028 Tetratricopeptide repeats BF28_RS09015 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF28_RS09025 SM00732 Likely ribonuclease with RNase H fold. BF28_RS09120 SM00382 ATPases associated with a variety of cellular activities BF28_RS09145 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS09190 SM00855 Phosphoglycerate mutase family BF28_RS09215 SM00098 Alkaline phosphatase homologues BF28_RS09225 SM00954 Region found in RelA / SpoT proteins BF28_RS09290 SM01103 BF28_RS09290 BF28_RS09300 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_RS09320 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF28_RS09330 SM00849 Metallo-beta-lactamase superfamily BF28_RS09360 SM00838 Elongation factor G C-terminus BF28_RS09370 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_RS09390 SM00271 DnaJ molecular chaperone homology domain BF28_RS09405 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_RS09440 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_RS09475 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_RS09495 SM00400 zinc finger BF28_RS09495 SM00493 BF28_RS09495 BF28_RS09495 SM00766 DNA primase DnaG DnaB-binding BF28_RS09530 SM00487 DEAD-like helicases superfamily BF28_RS09530 SM00490 helicase superfamily c-terminal domain BF28_RS09535 SM00518 AP endonuclease family 2 BF28_RS09550 SM00382 ATPases associated with a variety of cellular activities BF28_RS09615 SM00382 ATPases associated with a variety of cellular activities BF28_RS09655 SM00849 Metallo-beta-lactamase superfamily BF28_RS09665 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS09695 SM01018 B12 binding domain BF28_RS09745 SM00382 ATPases associated with a variety of cellular activities BF28_RS09780 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BF28_RS09815 SM00487 DEAD-like helicases superfamily BF28_RS09815 SM00490 helicase superfamily c-terminal domain BF28_RS09845 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS09850 SM00382 ATPases associated with a variety of cellular activities BF28_RS09905 SM00354 helix_turn _helix lactose operon repressor BF28_RS09915 SM00450 Rhodanese Homology Domain BF28_RS09945 SM00529 Helix-turn-helix diphteria tox regulatory element BF28_RS09980 SM00841 Elongation factor P, C-terminal BF28_RS09980 SM01185 BF28_RS09980 BF28_RS10000 SM00382 ATPases associated with a variety of cellular activities BF28_RS10050 SM00878 Biotin carboxylase C-terminal domain BF28_RS10085 SM00861 Transketolase, pyrimidine binding domain BF28_RS10090 SM00363 S4 RNA-binding domain BF28_RS10105 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_RS10110 SM00448 cheY-homologous receiver domain BF28_RS10150 SM00091 PAS domain BF28_RS10150 SM00382 ATPases associated with a variety of cellular activities BF28_RS10165 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF28_RS10185 SM00861 Transketolase, pyrimidine binding domain BF28_RS10230 SM00062 Bacterial periplasmic substrate-binding proteins BF28_RS10230 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF28_RS10240 SM00382 ATPases associated with a variety of cellular activities BF28_RS10290 SM00849 Metallo-beta-lactamase superfamily BF28_RS10315 SM00849 Metallo-beta-lactamase superfamily BF28_RS10330 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF28_RS10365 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS10415 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_RS10415 SM00876 Biotin and Thiamin Synthesis associated domain BF28_RS10445 SM00704 CDGSH-type zinc finger. Function unknown. BF28_RS10465 SM00354 helix_turn _helix lactose operon repressor BF28_RS10560 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF28_RS10580 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS10605 SM00382 ATPases associated with a variety of cellular activities BF28_RS10610 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS10615 SM00936 Penicillin-binding protein 5, C-terminal domain BF28_RS10625 SM00387 Histidine kinase-like ATPases BF28_RS10730 SM00849 Metallo-beta-lactamase superfamily BF28_RS10745 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS10745 SM00866 BF28_RS10745 BF28_RS10755 SM01061 CAT RNA binding domain BF28_RS10790 SM00267 diguanylate cyclase BF28_RS10815 SM01007 Class II Aldolase and Adducin N-terminal domain BF28_RS10905 SM00382 ATPases associated with a variety of cellular activities BF28_RS10940 SM00382 ATPases associated with a variety of cellular activities BF28_RS10945 SM00642 Alpha-amylase domain BF28_RS10950 SM00642 Alpha-amylase domain BF28_RS10970 SM00354 helix_turn _helix lactose operon repressor BF28_RS10985 SM00387 Histidine kinase-like ATPases BF28_RS10985 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS11080 SM00052 Putative diguanylate phosphodiesterase BF28_RS11145 SM00849 Metallo-beta-lactamase superfamily BF28_RS11175 SM00861 Transketolase, pyrimidine binding domain BF28_RS11255 SM00838 Elongation factor G C-terminus BF28_RS11280 SM00670 Large family of predicted nucleotide-binding domains BF28_RS11300 SM00878 Biotin carboxylase C-terminal domain BF28_RS11365 SM00855 Phosphoglycerate mutase family BF28_RS11405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_RS11425 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BF28_RS11455 SM00740 BF28_RS11455 BF28_RS11460 SM00740 BF28_RS11460 BF28_RS11500 SM00842 Cell division protein FtsA BF28_RS11505 SM00864 Tubulin/FtsZ family, GTPase domain BF28_RS11505 SM00865 Tubulin/FtsZ family, C-terminal domain BF28_RS11550 SM00363 S4 RNA-binding domain BF28_RS11575 SM00363 S4 RNA-binding domain BF28_RS11600 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF28_RS11605 SM00851 MGS-like domain BF28_RS11605 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF28_RS11605 SM01209 BF28_RS11605 BF28_RS11620 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF28_RS11665 SM00831 Cation transporter/ATPase, N-terminus BF28_RS11680 SM00072 Guanylate kinase homologues. BF28_RS11685 SM01409 BF28_RS11685 BF28_RS11695 SM00487 DEAD-like helicases superfamily BF28_RS11695 SM00490 helicase superfamily c-terminal domain BF28_RS11720 SM00331 Sigma factor PP2C-like phosphatases BF28_RS11720 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF28_RS11725 SM00220 Serine/Threonine protein kinases, catalytic domain BF28_RS11725 SM00740 BF28_RS11725 BF28_RS11740 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF28_RS11760 SM01120 BF28_RS11760 BF28_RS11760 SM01121 BF28_RS11760 BF28_RS11765 SM00487 DEAD-like helicases superfamily BF28_RS11765 SM00490 helicase superfamily c-terminal domain BF28_RS11780 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF28_RS11785 SM00822 BF28_RS11785 BF28_RS11795 SM00358 Double-stranded RNA binding motif BF28_RS11795 SM00535 Ribonuclease III family BF28_RS11800 SM00968 SMC proteins Flexible Hinge Domain BF28_RS11805 SM00382 ATPases associated with a variety of cellular activities BF28_RS11805 SM00962 SRP54-type protein, GTPase domain BF28_RS11805 SM00963 SRP54-type protein, helical bundle domain BF28_RS11815 SM00382 ATPases associated with a variety of cellular activities BF28_RS11815 SM00962 SRP54-type protein, GTPase domain BF28_RS11815 SM00963 SRP54-type protein, helical bundle domain BF28_RS11865 SM00881 CoA binding domain BF28_RS11875 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF28_RS11875 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF28_RS11875 SM00493 BF28_RS11875 BF28_RS11895 SM00382 ATPases associated with a variety of cellular activities BF28_RS11895 SM01086 C-terminal, D2-small domain, of ClpB protein BF28_RS11940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_RS11950 SM00479 BF28_RS11950 BF28_RS11950 SM00481 DNA polymerase alpha chain like domain BF28_RS11960 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_RS11960 SM00322 K homology RNA-binding domain BF28_RS11995 SM00904 Riboflavin kinase BF28_RS12000 SM01387 BF28_RS12000 BF28_RS12005 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_RS12005 SM00322 K homology RNA-binding domain BF28_RS12035 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF28_RS12045 SM01130 BF28_RS12045 BF28_RS12055 SM00849 Metallo-beta-lactamase superfamily BF28_RS12070 SM00382 ATPases associated with a variety of cellular activities BF28_RS12070 SM00843 BF28_RS12070 BF28_RS12075 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS12075 SM00866 BF28_RS12075 BF28_RS12085 SM00382 ATPases associated with a variety of cellular activities BF28_RS12135 SM00852 Probable molybdopterin binding domain BF28_RS12140 SM00382 ATPases associated with a variety of cellular activities BF28_RS12150 SM00322 K homology RNA-binding domain BF28_RS12150 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_RS12180 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_RS12195 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF28_RS12195 SM00534 ATPase domain of DNA mismatch repair MUTS family BF28_RS12200 SM00853 MutL C terminal dimerisation domain BF28_RS12200 SM01340 BF28_RS12200 BF28_RS12205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS12230 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS12265 SM00257 Lysin motif BF28_RS12275 SM00148 Phospholipase C, catalytic domain (part); domain X BF28_RS12285 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS12310 SM00052 Putative diguanylate phosphodiesterase BF28_RS12310 SM00091 PAS domain BF28_RS12310 SM00267 diguanylate cyclase BF28_RS12345 SM00478 endonuclease III BF28_RS12355 SM00342 helix_turn_helix, arabinose operon control protein BF28_RS12380 SM00382 ATPases associated with a variety of cellular activities BF28_RS12410 SM00411 bacterial (prokaryotic) histone like domain BF28_RS12425 SM00636 BF28_RS12425 BF28_RS12455 SM00420 helix_turn_helix, Deoxyribose operon repressor BF28_RS12455 SM01134 BF28_RS12455 BF28_RS12470 SM00287 Bacterial SH3 domain homologues BF28_RS12500 SM00382 ATPases associated with a variety of cellular activities BF28_RS12525 SM00422 helix_turn_helix, mercury resistance BF28_RS12530 SM01230 BF28_RS12530 BF28_RS12550 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS12600 SM00382 ATPases associated with a variety of cellular activities BF28_RS12820 SM00287 Bacterial SH3 domain homologues BF28_RS12820 SM00644 BF28_RS12820 BF28_RS12880 SM00857 Resolvase, N terminal domain BF28_RS12895 SM00062 Bacterial periplasmic substrate-binding proteins BF28_RS12900 SM00382 ATPases associated with a variety of cellular activities BF28_RS12915 SM00861 Transketolase, pyrimidine binding domain BF28_RS12930 SM00382 ATPases associated with a variety of cellular activities BF28_RS12935 SM00382 ATPases associated with a variety of cellular activities BF28_RS12995 SM00382 ATPases associated with a variety of cellular activities BF28_RS13095 SM01058 CarD-like/TRCF domain BF28_RS13125 SM00091 PAS domain BF28_RS13125 SM00387 Histidine kinase-like ATPases BF28_RS13125 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS13140 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF28_RS13145 SM00644 BF28_RS13145 BF28_RS13145 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BF28_RS13210 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF28_RS13255 SM00382 ATPases associated with a variety of cellular activities BF28_RS13270 SM00479 BF28_RS13270 BF28_RS13290 SM00257 Lysin motif BF28_RS13290 SM00636 BF28_RS13290 BF28_RS13305 SM01207 BF28_RS13305 BF28_RS13320 SM00448 cheY-homologous receiver domain BF28_RS13320 SM00862 Transcriptional regulatory protein, C terminal BF28_RS13325 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_RS13330 SM00881 CoA binding domain BF28_RS13340 SM00387 Histidine kinase-like ATPases BF28_RS13340 SM00433 TopoisomeraseII BF28_RS13345 SM00434 DNA Topoisomerase IV BF28_RS13360 SM00382 ATPases associated with a variety of cellular activities BF28_RS13465 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF28_RS13465 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF28_RS13485 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_RS13500 SM00852 Probable molybdopterin binding domain BF28_RS13610 SM01022 BF28_RS13610 BF28_RS13635 SM00357 Cold shock protein domain BF28_RS13640 SM00479 BF28_RS13640 BF28_RS13690 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF28_RS13765 SM00028 Tetratricopeptide repeats BF28_RS13775 SM00829 Enoylreductase BF28_RS13780 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS13855 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF28_RS13855 SM00534 ATPase domain of DNA mismatch repair MUTS family BF28_RS13865 SM00855 Phosphoglycerate mutase family BF28_RS13880 SM00829 Enoylreductase BF28_RS14005 SM00829 Enoylreductase BF28_RS14010 SM00849 Metallo-beta-lactamase superfamily BF28_RS14130 SM00382 ATPases associated with a variety of cellular activities BF28_RS14150 SM00871 Bacterial transcription activator, effector binding domain BF28_RS14205 SM00636 BF28_RS14205 BF28_RS14210 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS14280 SM00849 Metallo-beta-lactamase superfamily BF28_RS14320 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS14320 SM00866 BF28_RS14320 BF28_RS14355 SM00914 BF28_RS14355 BF28_RS14425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS14425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS14430 SM01276 BF28_RS14430 BF28_RS14450 SM00829 Enoylreductase BF28_RS14465 SM00829 Enoylreductase BF28_RS14480 SM00861 Transketolase, pyrimidine binding domain BF28_RS14485 SM01350 BF28_RS14485 BF28_RS14560 SM00422 helix_turn_helix, mercury resistance BF28_RS14565 SM01091 Transporter associated domain BF28_RS14590 SM00028 Tetratricopeptide repeats BF28_RS14640 SM00382 ATPases associated with a variety of cellular activities BF28_RS14650 SM01266 BF28_RS14650 BF28_RS14715 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS14730 SM00382 ATPases associated with a variety of cellular activities BF28_RS14785 SM00387 Histidine kinase-like ATPases BF28_RS14785 SM00421 helix_turn_helix, Lux Regulon BF28_RS14785 SM00448 cheY-homologous receiver domain BF28_RS14805 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS14820 SM00422 helix_turn_helix, mercury resistance BF28_RS14870 SM00382 ATPases associated with a variety of cellular activities BF28_RS14935 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS15000 SM00287 Bacterial SH3 domain homologues BF28_RS15000 SM00644 BF28_RS15000 BF28_RS15020 SM00860 SMI1 / KNR4 family BF28_RS15030 SM00342 helix_turn_helix, arabinose operon control protein BF28_RS15155 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS15165 SM00448 cheY-homologous receiver domain BF28_RS15165 SM00862 Transcriptional regulatory protein, C terminal BF28_RS15170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS15170 SM00387 Histidine kinase-like ATPases BF28_RS15170 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS15185 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS15195 SM00382 ATPases associated with a variety of cellular activities BF28_RS15230 SM00849 Metallo-beta-lactamase superfamily BF28_RS15245 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS15325 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS15355 SM00342 helix_turn_helix, arabinose operon control protein BF28_RS15390 SM00344 helix_turn_helix ASNC type BF28_RS15410 SM00028 Tetratricopeptide repeats BF28_RS15420 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS15435 SM00226 Low molecular weight phosphatase family BF28_RS15450 SM00421 helix_turn_helix, Lux Regulon BF28_RS15450 SM00448 cheY-homologous receiver domain BF28_RS15465 SM00382 ATPases associated with a variety of cellular activities BF28_RS15510 SM00155 Phospholipase D. Active site motifs. BF28_RS15525 SM01058 CarD-like/TRCF domain BF28_RS15605 SM01060 BF28_RS15605 BF28_RS15660 SM00387 Histidine kinase-like ATPases BF28_RS15665 SM00448 cheY-homologous receiver domain BF28_RS15705 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS15710 SM00870 BF28_RS15710 BF28_RS15725 SM00382 ATPases associated with a variety of cellular activities BF28_RS15740 SM00422 helix_turn_helix, mercury resistance BF28_RS15810 SM00849 Metallo-beta-lactamase superfamily BF28_RS15865 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS15890 SM00346 helix_turn_helix isocitrate lyase regulation BF28_RS15895 SM00796 Allophanate hydrolase subunit 1 BF28_RS15900 SM00797 Allophanate hydrolase subunit 2 BF28_RS15960 SM00422 helix_turn_helix, mercury resistance BF28_RS16020 SM00448 cheY-homologous receiver domain BF28_RS16020 SM00862 Transcriptional regulatory protein, C terminal BF28_RS16025 SM00387 Histidine kinase-like ATPases BF28_RS16025 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS16040 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS16065 SM00342 helix_turn_helix, arabinose operon control protein BF28_RS16065 SM00871 Bacterial transcription activator, effector binding domain BF28_RS16090 SM00382 ATPases associated with a variety of cellular activities BF28_RS16100 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS16105 SM00382 ATPases associated with a variety of cellular activities BF28_RS16130 SM00889 Elongation factor G, domain IV BF28_RS16135 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS16150 SM00382 ATPases associated with a variety of cellular activities BF28_RS16190 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS16205 SM00382 ATPases associated with a variety of cellular activities BF28_RS16215 SM01060 BF28_RS16215 BF28_RS16330 SM00850 LytTr DNA-binding domain BF28_RS16355 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS16365 SM00098 Alkaline phosphatase homologues BF28_RS16385 SM00346 helix_turn_helix isocitrate lyase regulation BF28_RS16400 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF28_RS16420 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS16455 SM01133 BF28_RS16455 BF28_RS16475 SM00382 ATPases associated with a variety of cellular activities BF28_RS16530 SM00287 Bacterial SH3 domain homologues BF28_RS16565 SM00830 Chorismate mutase type II BF28_RS16615 SM00382 ATPases associated with a variety of cellular activities BF28_RS16705 SM00028 Tetratricopeptide repeats BF28_RS16735 SM00382 ATPases associated with a variety of cellular activities BF28_RS16740 SM00062 Bacterial periplasmic substrate-binding proteins BF28_RS16810 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS16815 SM00382 ATPases associated with a variety of cellular activities BF28_RS16985 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS17030 SM00448 cheY-homologous receiver domain BF28_RS17030 SM00862 Transcriptional regulatory protein, C terminal BF28_RS17035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS17035 SM00387 Histidine kinase-like ATPases BF28_RS17035 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS17040 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF28_RS17085 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF28_RS17170 SM00091 PAS domain BF28_RS17170 SM00382 ATPases associated with a variety of cellular activities BF28_RS17190 SM01130 BF28_RS17190 BF28_RS17220 SM01131 BF28_RS17220 BF28_RS17265 SM00341 Helicase and RNase D C-terminal BF28_RS17265 SM00487 DEAD-like helicases superfamily BF28_RS17265 SM00490 helicase superfamily c-terminal domain BF28_RS17265 SM00956 BF28_RS17265 BF28_RS17330 SM00849 Metallo-beta-lactamase superfamily BF28_RS17365 SM00060 Fibronectin type 3 domain BF28_RS17365 SM00495 Chitin-binding domain type 3 BF28_RS17400 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_RS17400 SM00382 ATPases associated with a variety of cellular activities BF28_RS17465 SM00861 Transketolase, pyrimidine binding domain BF28_RS17495 SM00420 helix_turn_helix, Deoxyribose operon repressor BF28_RS17495 SM01134 BF28_RS17495 BF28_RS17515 SM00382 ATPases associated with a variety of cellular activities BF28_RS17630 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS17655 SM00871 Bacterial transcription activator, effector binding domain BF28_RS17675 SM00642 Alpha-amylase domain BF28_RS17680 SM00014 Acid phosphatase homologues BF28_RS17760 SM00465 GIY-YIG type nucleases (URI domain) BF28_RS17850 SM00480 DNA polymerase III beta subunit BF28_RS17905 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS17945 SM00422 helix_turn_helix, mercury resistance BF28_RS17990 SM00382 ATPases associated with a variety of cellular activities BF28_RS18050 SM00740 BF28_RS18050 BF28_RS18055 SM00014 Acid phosphatase homologues BF28_RS18060 SM00829 Enoylreductase BF28_RS18075 SM00387 Histidine kinase-like ATPases BF28_RS18075 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS18085 SM00382 ATPases associated with a variety of cellular activities BF28_RS18110 SM00091 PAS domain BF28_RS18110 SM00387 Histidine kinase-like ATPases BF28_RS18110 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS18250 SM01209 BF28_RS18250 BF28_RS18255 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS18285 SM00382 ATPases associated with a variety of cellular activities BF28_RS18300 SM00382 ATPases associated with a variety of cellular activities BF28_RS18310 SM00387 Histidine kinase-like ATPases BF28_RS18315 SM00448 cheY-homologous receiver domain BF28_RS18315 SM00862 Transcriptional regulatory protein, C terminal BF28_RS18395 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS18410 SM00342 helix_turn_helix, arabinose operon control protein BF28_RS18450 SM00422 helix_turn_helix, mercury resistance BF28_RS18450 SM00871 Bacterial transcription activator, effector binding domain BF28_RS18525 SM00448 cheY-homologous receiver domain BF28_RS18525 SM00862 Transcriptional regulatory protein, C terminal BF28_RS18530 SM00387 Histidine kinase-like ATPases BF28_RS18530 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS18600 SM00878 Biotin carboxylase C-terminal domain BF28_RS18630 SM00382 ATPases associated with a variety of cellular activities BF28_RS18645 SM00450 Rhodanese Homology Domain BF28_RS18645 SM00849 Metallo-beta-lactamase superfamily BF28_RS18670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS18670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS18670 SM00319 Homologues of the ligand binding domain of Tar BF28_RS18675 SM00052 Putative diguanylate phosphodiesterase BF28_RS18675 SM00091 PAS domain BF28_RS18675 SM00267 diguanylate cyclase BF28_RS18680 SM00382 ATPases associated with a variety of cellular activities BF28_RS18695 SM00646 BF28_RS18695 BF28_RS18720 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS18790 SM00354 helix_turn _helix lactose operon repressor BF28_RS18795 SM00014 Acid phosphatase homologues BF28_RS18870 SM00855 Phosphoglycerate mutase family BF28_RS18875 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS18895 SM00382 ATPases associated with a variety of cellular activities BF28_RS18925 SM00487 DEAD-like helicases superfamily BF28_RS18925 SM00490 helicase superfamily c-terminal domain BF28_RS18935 SM00849 Metallo-beta-lactamase superfamily BF28_RS18960 SM01207 BF28_RS18960 BF28_RS19030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_RS19035 SM00835 Cupin BF28_RS19060 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS19070 SM00646 BF28_RS19070 BF28_RS19080 SM00382 ATPases associated with a variety of cellular activities BF28_RS19085 SM00382 ATPases associated with a variety of cellular activities BF28_RS19120 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF28_RS19135 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS19160 SM00357 Cold shock protein domain BF28_RS19200 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS19225 SM01059 Chloramphenicol acetyltransferase BF28_RS19245 SM00849 Metallo-beta-lactamase superfamily BF28_RS19275 SM00849 Metallo-beta-lactamase superfamily BF28_RS19320 SM00382 ATPases associated with a variety of cellular activities BF28_RS19325 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF28_RS19330 SM00363 S4 RNA-binding domain BF28_RS19370 SM00411 bacterial (prokaryotic) histone like domain BF28_RS19390 SM00923 MbtH-like protein BF28_RS19395 SM00823 Phosphopantetheine attachment site BF28_RS19395 SM00824 Thioesterase BF28_RS19440 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS19595 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF28_RS19645 SM00014 Acid phosphatase homologues BF28_RS19655 SM00219 Tyrosine kinase, catalytic domain BF28_RS19695 SM00382 ATPases associated with a variety of cellular activities BF28_RS19710 SM00882 Coenzyme A transferase BF28_RS19715 SM00882 Coenzyme A transferase BF28_RS19730 SM00387 Histidine kinase-like ATPases BF28_RS19730 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS19745 SM01091 Transporter associated domain BF28_RS19785 SM00382 ATPases associated with a variety of cellular activities BF28_RS19840 SM00829 Enoylreductase BF28_RS19850 SM00421 helix_turn_helix, Lux Regulon BF28_RS19850 SM00448 cheY-homologous receiver domain BF28_RS19855 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF28_RS19965 SM00563 Phosphate acyltransferases BF28_RS20030 SM00382 ATPases associated with a variety of cellular activities BF28_RS20115 SM00857 Resolvase, N terminal domain BF28_RS20155 SM00028 Tetratricopeptide repeats BF28_RS20165 SM00382 ATPases associated with a variety of cellular activities BF28_RS20180 SM00327 von Willebrand factor (vWF) type A domain BF28_RS20210 SM00028 Tetratricopeptide repeats BF28_RS20220 SM00836 DALR anticodon binding domain BF28_RS20220 SM01016 Arginyl tRNA synthetase N terminal dom BF28_RS20240 SM00567 E-Z type HEAT repeats BF28_RS20240 SM00932 Scaffold protein Nfu/NifU N terminal BF28_RS20270 SM00382 ATPases associated with a variety of cellular activities BF28_RS20275 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_RS20285 SM00860 SMI1 / KNR4 family BF28_RS20335 SM00894 Excalibur calcium-binding domain BF28_RS20400 SM00852 Probable molybdopterin binding domain BF28_RS20410 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_RS20415 SM00100 Cyclic nucleotide-monophosphate binding domain BF28_RS20415 SM00419 helix_turn_helix, cAMP Regulatory protein BF28_RS20435 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF28_RS20460 SM00460 Transglutaminase/protease-like homologues BF28_RS20475 SM00849 Metallo-beta-lactamase superfamily BF28_RS20495 SM00829 Enoylreductase BF28_RS20515 SM00487 DEAD-like helicases superfamily BF28_RS20515 SM00490 helicase superfamily c-terminal domain BF28_RS20650 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS20680 SM01005 Alanine racemase, C-terminal domain BF28_RS20695 SM00855 Phosphoglycerate mutase family BF28_RS20700 SM00244 prohibitin homologues BF28_RS20775 SM01091 Transporter associated domain BF28_RS20800 SM00155 Phospholipase D. Active site motifs. BF28_RS20850 SM00855 Phosphoglycerate mutase family BF28_RS20960 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF28_RS21025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS21025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS21060 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS21070 SM00966 SpoVT / AbrB like domain BF28_RS21095 SM00460 Transglutaminase/protease-like homologues BF28_RS21120 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS21190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS21190 SM00387 Histidine kinase-like ATPases BF28_RS21190 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS21195 SM00448 cheY-homologous receiver domain BF28_RS21195 SM00862 Transcriptional regulatory protein, C terminal BF28_RS21275 SM00387 Histidine kinase-like ATPases BF28_RS21275 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS21280 SM00448 cheY-homologous receiver domain BF28_RS21280 SM00862 Transcriptional regulatory protein, C terminal BF28_RS21285 SM00382 ATPases associated with a variety of cellular activities BF28_RS21295 SM00287 Bacterial SH3 domain homologues BF28_RS21330 SM00382 ATPases associated with a variety of cellular activities BF28_RS21335 SM00382 ATPases associated with a variety of cellular activities BF28_RS21360 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS21395 SM00382 ATPases associated with a variety of cellular activities BF28_RS21400 SM00382 ATPases associated with a variety of cellular activities BF28_RS21435 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF28_RS21530 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF28_RS21530 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF28_RS21530 SM00493 BF28_RS21530 BF28_RS21535 SM00966 SpoVT / AbrB like domain BF28_RS21550 SM00382 ATPases associated with a variety of cellular activities BF28_RS21565 SM00382 ATPases associated with a variety of cellular activities BF28_RS21580 SM00823 Phosphopantetheine attachment site BF28_RS21595 SM01011 Aminopeptidase P, N-terminal domain BF28_RS21630 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF28_RS21640 SM01133 BF28_RS21640 BF28_RS21690 SM00450 Rhodanese Homology Domain BF28_RS21710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS21710 SM00387 Histidine kinase-like ATPases BF28_RS21710 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS21715 SM00448 cheY-homologous receiver domain BF28_RS21715 SM00862 Transcriptional regulatory protein, C terminal BF28_RS21775 SM00850 LytTr DNA-binding domain BF28_RS21805 SM00854 Bacterial capsule synthesis protein PGA_cap BF28_RS21975 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS21975 SM00866 BF28_RS21975 BF28_RS22005 SM00382 ATPases associated with a variety of cellular activities BF28_RS22025 SM00047 Lysozyme subfamily 2 BF28_RS22030 SM00646 BF28_RS22030 BF28_RS22070 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS22095 SM00487 DEAD-like helicases superfamily BF28_RS22095 SM00490 helicase superfamily c-terminal domain BF28_RS22100 SM00448 cheY-homologous receiver domain BF28_RS22105 SM00387 Histidine kinase-like ATPases BF28_RS22110 SM00919 Malic enzyme, NAD binding domain BF28_RS22110 SM01274 BF28_RS22110 BF28_RS22130 SM00155 Phospholipase D. Active site motifs. BF28_RS22145 SM00382 ATPases associated with a variety of cellular activities BF28_RS22155 SM00421 helix_turn_helix, Lux Regulon BF28_RS22155 SM00448 cheY-homologous receiver domain BF28_RS22190 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS22265 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF28_RS22275 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS22275 SM00895 BF28_RS22275 BF28_RS22315 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS22335 SM00855 Phosphoglycerate mutase family BF28_RS22350 SM00835 Cupin BF28_RS22370 SM00849 Metallo-beta-lactamase superfamily BF28_RS22370 SM01027 Beta-Casp domain BF28_RS22385 SM00382 ATPases associated with a variety of cellular activities BF28_RS22405 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS22460 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF28_RS22470 SM00382 ATPases associated with a variety of cellular activities BF28_RS22470 SM00962 SRP54-type protein, GTPase domain BF28_RS22540 SM00260 Two component signalling adaptor domain BF28_RS22540 SM00448 cheY-homologous receiver domain BF28_RS22575 SM00382 ATPases associated with a variety of cellular activities BF28_RS22650 SM00138 Methyltransferase, chemotaxis proteins BF28_RS22670 SM00073 Histidine Phosphotransfer domain BF28_RS22670 SM00260 Two component signalling adaptor domain BF28_RS22670 SM00387 Histidine kinase-like ATPases BF28_RS22670 SM01231 BF28_RS22670 BF28_RS22675 SM00448 cheY-homologous receiver domain BF28_RS22720 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS22775 SM00422 helix_turn_helix, mercury resistance BF28_RS22775 SM00871 Bacterial transcription activator, effector binding domain BF28_RS22780 SM00849 Metallo-beta-lactamase superfamily BF28_RS22830 SM00357 Cold shock protein domain BF28_RS22895 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF28_RS22895 SM00475 5'-3' exonuclease BF28_RS22925 SM00450 Rhodanese Homology Domain BF28_RS22985 SM00491 BF28_RS22985 BF28_RS22995 SM00981 BF28_RS22995 BF28_RS23045 SM00060 Fibronectin type 3 domain BF28_RS23055 SM00478 endonuclease III BF28_RS23055 SM00525 BF28_RS23055 BF28_RS23080 SM00479 BF28_RS23080 BF28_RS23080 SM00491 BF28_RS23080 BF28_RS23130 SM00851 MGS-like domain BF28_RS23155 SM00986 Uracil DNA glycosylase superfamily BF28_RS23155 SM00987 UreE urease accessory protein, C-terminal domain BF28_RS23200 SM00914 BF28_RS23200 BF28_RS23205 SM00028 Tetratricopeptide repeats BF28_RS23225 SM00562 BF28_RS23225 BF28_RS23250 SM00411 bacterial (prokaryotic) histone like domain BF28_RS23305 SM01240 BF28_RS23305 BF28_RS23310 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_RS23325 SM00870 BF28_RS23325 BF28_RS23335 SM00644 BF28_RS23335 BF28_RS23350 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF28_RS23360 SM00422 helix_turn_helix, mercury resistance BF28_RS23370 SM00257 Lysin motif BF28_RS23380 SM00487 DEAD-like helicases superfamily BF28_RS23380 SM00490 helicase superfamily c-terminal domain BF28_RS23405 SM00257 Lysin motif BF28_RS23415 SM00091 PAS domain BF28_RS23415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS23415 SM00387 Histidine kinase-like ATPases BF28_RS23415 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS23420 SM00448 cheY-homologous receiver domain BF28_RS23420 SM00862 Transcriptional regulatory protein, C terminal BF28_RS23440 SM00363 S4 RNA-binding domain BF28_RS23495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS23495 SM00387 Histidine kinase-like ATPases BF28_RS23495 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS23515 SM00091 PAS domain BF28_RS23515 SM00387 Histidine kinase-like ATPases BF28_RS23515 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS23610 SM00421 helix_turn_helix, Lux Regulon BF28_RS23610 SM00448 cheY-homologous receiver domain BF28_RS23615 SM00387 Histidine kinase-like ATPases BF28_RS23800 SM01329 BF28_RS23800 BF28_RS23805 SM00917 LeuA allosteric (dimerisation) domain BF28_RS23880 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS24000 SM00344 helix_turn_helix ASNC type BF28_RS24020 SM00382 ATPases associated with a variety of cellular activities BF28_RS24030 SM00382 ATPases associated with a variety of cellular activities BF28_RS24035 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS24120 SM00387 Histidine kinase-like ATPases BF28_RS24120 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS24140 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS24145 SM00387 Histidine kinase-like ATPases BF28_RS24145 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS24165 SM01007 Class II Aldolase and Adducin N-terminal domain BF28_RS24170 SM00365 Leucine-rich repeat, SDS22-like subfamily BF28_RS24170 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF28_RS24170 SM00725 NEAr Transporter domain BF28_RS24180 SM00420 helix_turn_helix, Deoxyribose operon repressor BF28_RS24180 SM01134 BF28_RS24180 BF28_RS24205 SM00382 ATPases associated with a variety of cellular activities BF28_RS24240 SM00822 BF28_RS24240 BF28_RS24310 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS24310 SM00895 BF28_RS24310 BF28_RS24315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS24315 SM00387 Histidine kinase-like ATPases BF28_RS24315 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS24320 SM00448 cheY-homologous receiver domain BF28_RS24320 SM00862 Transcriptional regulatory protein, C terminal BF28_RS24370 SM00014 Acid phosphatase homologues BF28_RS24390 SM00382 ATPases associated with a variety of cellular activities BF28_RS24410 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS24535 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS24540 SM00861 Transketolase, pyrimidine binding domain BF28_RS24660 SM00635 Bacterial Ig-like domain 2 BF28_RS24815 SM00954 Region found in RelA / SpoT proteins BF28_RS24825 SM01118 BF28_RS24825 BF28_RS24855 SM00155 Phospholipase D. Active site motifs. BF28_RS24895 SM00382 ATPases associated with a variety of cellular activities BF28_RS24900 SM00382 ATPases associated with a variety of cellular activities BF28_RS24940 SM00825 Beta-ketoacyl synthase BF28_RS24970 SM00382 ATPases associated with a variety of cellular activities BF28_RS24970 SM01086 C-terminal, D2-small domain, of ClpB protein BF28_RS25015 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_RS25025 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS25030 SM00642 Alpha-amylase domain BF28_RS25045 SM01060 BF28_RS25045 BF28_RS25160 SM00357 Cold shock protein domain BF28_RS25200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS25200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS25230 SM00448 cheY-homologous receiver domain BF28_RS25230 SM00862 Transcriptional regulatory protein, C terminal BF28_RS25235 SM00387 Histidine kinase-like ATPases BF28_RS25235 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS25250 SM00342 helix_turn_helix, arabinose operon control protein BF28_RS25250 SM00871 Bacterial transcription activator, effector binding domain BF28_RS25265 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_RS25280 SM00725 NEAr Transporter domain BF28_RS25305 SM00849 Metallo-beta-lactamase superfamily BF28_RS25315 SM00354 helix_turn _helix lactose operon repressor BF28_RS25425 SM00422 helix_turn_helix, mercury resistance BF28_RS25545 SM00382 ATPases associated with a variety of cellular activities BF28_RS25560 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS25610 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS25735 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_RS25775 SM00829 Enoylreductase BF28_RS25790 SM00382 ATPases associated with a variety of cellular activities BF28_RS25795 SM00387 Histidine kinase-like ATPases BF28_RS25795 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS25800 SM00448 cheY-homologous receiver domain BF28_RS25800 SM00862 Transcriptional regulatory protein, C terminal BF28_RS25835 SM00387 Histidine kinase-like ATPases BF28_RS25835 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS25835 SM00448 cheY-homologous receiver domain BF28_RS25840 SM00138 Methyltransferase, chemotaxis proteins BF28_RS25845 SM00331 Sigma factor PP2C-like phosphatases BF28_RS25845 SM00448 cheY-homologous receiver domain BF28_RS25915 SM00460 Transglutaminase/protease-like homologues BF28_RS25935 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_RS26030 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS26045 SM01061 CAT RNA binding domain BF28_RS26160 SM00422 helix_turn_helix, mercury resistance BF28_RS26250 SM00860 SMI1 / KNR4 family BF28_RS26290 SM00382 ATPases associated with a variety of cellular activities BF28_RS26295 SM00382 ATPases associated with a variety of cellular activities BF28_RS26350 SM00646 BF28_RS26350 BF28_RS26410 SM00635 Bacterial Ig-like domain 2 BF28_RS26425 SM00957 SecA DEAD-like domain BF28_RS26425 SM00958 SecA preprotein cross-linking domain BF28_RS26465 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_RS26470 SM00644 BF28_RS26470 BF28_RS26535 SM00421 helix_turn_helix, Lux Regulon BF28_RS26535 SM00448 cheY-homologous receiver domain BF28_RS26540 SM00387 Histidine kinase-like ATPases BF28_RS26580 SM00382 ATPases associated with a variety of cellular activities BF28_RS26590 SM00062 Bacterial periplasmic substrate-binding proteins BF28_RS26590 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF28_RS26595 SM00382 ATPases associated with a variety of cellular activities BF28_RS26600 SM00382 ATPases associated with a variety of cellular activities BF28_RS26625 SM01060 BF28_RS26625 BF28_RS26665 SM00829 Enoylreductase BF28_RS26700 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS26735 SM00344 helix_turn_helix ASNC type BF28_RS26840 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF28_RS26900 SM00382 ATPases associated with a variety of cellular activities BF28_RS26910 SM00287 Bacterial SH3 domain homologues BF28_RS26960 SM00829 Enoylreductase BF28_RS26985 SM00450 Rhodanese Homology Domain BF28_RS26990 SM00450 Rhodanese Homology Domain BF28_RS27000 SM00450 Rhodanese Homology Domain BF28_RS27000 SM00849 Metallo-beta-lactamase superfamily BF28_RS27005 SM00450 Rhodanese Homology Domain BF28_RS27015 SM00450 Rhodanese Homology Domain BF28_RS27110 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS27200 SM00382 ATPases associated with a variety of cellular activities BF28_RS27210 SM00287 Bacterial SH3 domain homologues BF28_RS27230 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_RS27375 SM00899 BF28_RS27375 BF28_RS27475 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS27520 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS27530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS27565 SM00770 Zinc dependent phospholipase C (alpha toxin) BF28_RS27585 SM00829 Enoylreductase BF28_RS27620 SM00382 ATPases associated with a variety of cellular activities BF28_RS27635 SM00354 helix_turn _helix lactose operon repressor BF28_RS27645 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS27655 SM00382 ATPases associated with a variety of cellular activities BF28_RS27660 SM00382 ATPases associated with a variety of cellular activities BF28_RS27700 SM00448 cheY-homologous receiver domain BF28_RS27700 SM00862 Transcriptional regulatory protein, C terminal BF28_RS27705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS27705 SM00387 Histidine kinase-like ATPases BF28_RS27705 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS27755 SM00062 Bacterial periplasmic substrate-binding proteins BF28_RS27755 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF28_RS27760 SM00382 ATPases associated with a variety of cellular activities BF28_RS27795 SM00642 Alpha-amylase domain BF28_RS27805 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS27805 SM00866 BF28_RS27805 BF28_RS27815 SM00052 Putative diguanylate phosphodiesterase BF28_RS27815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF28_RS27815 SM00091 PAS domain BF28_RS27815 SM00267 diguanylate cyclase BF28_RS27830 SM00155 Phospholipase D. Active site motifs. BF28_RS27835 SM00382 ATPases associated with a variety of cellular activities BF28_RS27840 SM00327 von Willebrand factor (vWF) type A domain BF28_RS27870 SM00382 ATPases associated with a variety of cellular activities BF28_RS27900 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS27915 SM01091 Transporter associated domain BF28_RS27960 SM00028 Tetratricopeptide repeats BF28_RS27960 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS27975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_RS27985 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF28_RS27985 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF28_RS28000 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF28_RS28000 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF28_RS28020 SM00448 cheY-homologous receiver domain BF28_RS28020 SM00862 Transcriptional regulatory protein, C terminal BF28_RS28025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS28025 SM00387 Histidine kinase-like ATPases BF28_RS28025 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS28035 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS28050 SM00919 Malic enzyme, NAD binding domain BF28_RS28050 SM01274 BF28_RS28050 BF28_RS28060 SM00448 cheY-homologous receiver domain BF28_RS28065 SM00387 Histidine kinase-like ATPases BF28_RS28070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS28070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS28085 SM00387 Histidine kinase-like ATPases BF28_RS28085 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS28090 SM00448 cheY-homologous receiver domain BF28_RS28090 SM00862 Transcriptional regulatory protein, C terminal BF28_RS28115 SM00382 ATPases associated with a variety of cellular activities BF28_RS28125 SM00248 ankyrin repeats BF28_RS28150 SM00448 cheY-homologous receiver domain BF28_RS28155 SM00091 PAS domain BF28_RS28155 SM00387 Histidine kinase-like ATPases BF28_RS28160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS28160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS28165 SM00244 prohibitin homologues BF28_RS28175 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF28_RS28195 SM00382 ATPases associated with a variety of cellular activities BF28_RS28200 SM00062 Bacterial periplasmic substrate-binding proteins BF28_RS28225 SM00763 PrkA AAA domain BF28_RS28235 SM00052 Putative diguanylate phosphodiesterase BF28_RS28235 SM00091 PAS domain BF28_RS28235 SM00267 diguanylate cyclase BF28_RS28250 SM00567 E-Z type HEAT repeats BF28_RS28405 SM00382 ATPases associated with a variety of cellular activities BF28_RS28425 SM00382 ATPases associated with a variety of cellular activities BF28_RS28450 SM00478 endonuclease III BF28_RS28450 SM00525 BF28_RS28450 BF28_RS28535 SM00984 UDP binding domain BF28_RS28595 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS28615 SM00382 ATPases associated with a variety of cellular activities BF28_RS28635 SM00478 endonuclease III BF28_RS28725 SM00226 Low molecular weight phosphatase family BF28_RS28735 SM00831 Cation transporter/ATPase, N-terminus BF28_RS28780 SM00946 Prolyl-tRNA synthetase, C-terminal BF28_RS28805 SM00530 Helix-turn-helix XRE-family like proteins BF28_RS28835 SM00060 Fibronectin type 3 domain BF28_RS28835 SM00636 BF28_RS28835 BF28_RS28835 SM00637 BF28_RS28835 BF28_RS28840 SM00382 ATPases associated with a variety of cellular activities BF28_RS28850 SM00382 ATPases associated with a variety of cellular activities BF28_RS28870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS28870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS28895 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF28_RS28895 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF28_RS28895 SM00493 BF28_RS28895 BF28_RS28915 SM00642 Alpha-amylase domain BF28_RS28920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS28920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS28925 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_RS28925 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS28930 SM00382 ATPases associated with a variety of cellular activities BF28_RS28935 SM00062 Bacterial periplasmic substrate-binding proteins BF28_RS28935 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF28_RS29045 SM01007 Class II Aldolase and Adducin N-terminal domain BF28_RS29090 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF28_RS29110 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF28_RS29110 SM00387 Histidine kinase-like ATPases BF28_RS29110 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS29160 SM00382 ATPases associated with a variety of cellular activities BF28_RS29180 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF28_RS29185 SM00845 GatB domain BF28_RS29205 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_RS29235 SM00382 ATPases associated with a variety of cellular activities BF28_RS29235 SM00930 BF28_RS29235 BF28_RS29265 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF28_RS29265 SM00292 breast cancer carboxy-terminal domain BF28_RS29265 SM00532 Ligase N family BF28_RS29290 SM00244 prohibitin homologues BF28_RS29300 SM01209 BF28_RS29300 BF28_RS29300 SM01210 BF28_RS29300 BF28_RS29305 SM00798 AICARFT/IMPCHase bienzyme BF28_RS29305 SM00851 MGS-like domain BF28_RS29330 SM01211 BF28_RS29330 BF28_RS29345 SM00998 Adenylosuccinate lyase C-terminus BF28_RS29400 SM00448 cheY-homologous receiver domain BF28_RS29400 SM00862 Transcriptional regulatory protein, C terminal BF28_RS29405 SM00387 Histidine kinase-like ATPases BF28_RS29405 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS29410 SM00382 ATPases associated with a variety of cellular activities BF28_RS29495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_RS29495 SM00387 Histidine kinase-like ATPases BF28_RS29495 SM00388 His Kinase A (phosphoacceptor) domain BF28_RS29500 SM00448 cheY-homologous receiver domain BF28_RS29500 SM00862 Transcriptional regulatory protein, C terminal BF28_RS29530 SM00883 Chaperonin 10 Kd subunit BF28_RS29545 SM00881 CoA binding domain BF28_RS29550 SM00382 ATPases associated with a variety of cellular activities BF28_RS29655 SM00731 SprT homologues. BF28_RS29665 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_RS29665 SM00732 Likely ribonuclease with RNase H fold. BF28_RS29680 SM01005 Alanine racemase, C-terminal domain BF28_RS29705 SM00487 DEAD-like helicases superfamily BF28_RS29705 SM00490 helicase superfamily c-terminal domain BF28_RS29775 SM00382 ATPases associated with a variety of cellular activities BF28_RS29780 SM00382 ATPases associated with a variety of cellular activities BF28_RS29810 SM00382 ATPases associated with a variety of cellular activities BF28_RS29870 SM00354 helix_turn _helix lactose operon repressor BF28_RS29880 SM00563 Phosphate acyltransferases BF28_RS29980 SM00342 helix_turn_helix, arabinose operon control protein BF28_RS29995 SM00382 ATPases associated with a variety of cellular activities BF28_RS30000 SM00382 ATPases associated with a variety of cellular activities BF28_RS30050 SM00829 Enoylreductase BF28_RS30060 SM00382 ATPases associated with a variety of cellular activities BF28_RS30060 SM00930 BF28_RS30060 BF28_RS30105 SM01350 BF28_RS30105 BF28_RS30120 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_RS30120 SM00895 BF28_RS30120 BF28_RS30345 SM00860 SMI1 / KNR4 family BF28_RS30365 SM00465 GIY-YIG type nucleases (URI domain)