BCG9842_RS00005	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
BCG9842_RS00010	SM00480	DNA polymerase III beta subunit
BCG9842_RS00025	SM00387	Histidine kinase-like ATPases
BCG9842_RS00025	SM00433	TopoisomeraseII
BCG9842_RS00030	SM00434	DNA Topoisomerase IV
BCG9842_RS00065	SM00116	Domain in cystathionine beta-synthase and other proteins.
BCG9842_RS00065	SM01240	BCG9842_RS00065
BCG9842_RS00070	SM00936	Penicillin-binding protein 5, C-terminal domain 
BCG9842_RS00120	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS00130	SM00493	BCG9842_RS00130
BCG9842_RS00205	SM00465	GIY-YIG type nucleases (URI domain)
BCG9842_RS00215	SM00966	SpoVT / AbrB like domain 
BCG9842_RS00230	SM00493	BCG9842_RS00230
BCG9842_RS00235	SM00650	Ribosomal RNA adenine dimethylases
BCG9842_RS00280	SM01400	BCG9842_RS00280
BCG9842_RS00295	SM00487	DEAD-like helicases superfamily
BCG9842_RS00295	SM00490	helicase superfamily c-terminal domain
BCG9842_RS00295	SM00982	BCG9842_RS00295
BCG9842_RS00295	SM01058	CarD-like/TRCF domain
BCG9842_RS00300	SM00966	SpoVT / AbrB like domain 
BCG9842_RS00315	SM00363	S4 RNA-binding domain
BCG9842_RS00335	SM00316	Ribosomal protein S1-like RNA-binding domain
BCG9842_RS00350	SM00331	Sigma factor PP2C-like phosphatases
BCG9842_RS00350	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BCG9842_RS00355	SM00977	TilS substrate C-terminal domain
BCG9842_RS00365	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS00405	SM00905	Dihydroneopterin aldolase
BCG9842_RS00415	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS00460	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS00460	SM01086	C-terminal, D2-small domain, of ClpB protein
BCG9842_RS00465	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS00475	SM00670	Large family of predicted nucleotide-binding domains
BCG9842_RS00500	SM00840	BCG9842_RS00500
BCG9842_RS00505	SM00535	Ribonuclease III family
BCG9842_RS00510	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BCG9842_RS00520	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS00530	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BCG9842_RS00535	SM00649	Ribosomal protein L11/L12
BCG9842_RS00565	SM00663	RNA polymerase I subunit A N-terminus
BCG9842_RS00585	SM00838	Elongation factor G C-terminus
BCG9842_RS00585	SM00889	Elongation factor G, domain IV
BCG9842_RS00595	SM01403	BCG9842_RS00595
BCG9842_RS00615	SM01382	BCG9842_RS00615
BCG9842_RS00615	SM01383	BCG9842_RS00615
BCG9842_RS00630	SM00322	K homology RNA-binding domain
BCG9842_RS00650	SM01374	BCG9842_RS00650
BCG9842_RS00655	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BCG9842_RS00715	SM00316	Ribosomal protein S1-like RNA-binding domain
BCG9842_RS00735	SM00662	RNA polymerases D
BCG9842_RS00745	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS00750	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS00780	SM00646	BCG9842_RS00780
BCG9842_RS00795	SM01251	BCG9842_RS00795
BCG9842_RS00930	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS00930	SM00930	BCG9842_RS00930
BCG9842_RS00940	SM00829	Enoylreductase
BCG9842_RS00995	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS01000	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS01080	SM00563	Phosphate acyltransferases
BCG9842_RS01085	SM00354	helix_turn _helix lactose operon repressor
BCG9842_RS01135	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS01160	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS01165	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS01235	SM00487	DEAD-like helicases superfamily
BCG9842_RS01235	SM00490	helicase superfamily c-terminal domain
BCG9842_RS01260	SM01005	Alanine racemase, C-terminal domain
BCG9842_RS01275	SM00316	Ribosomal protein S1-like RNA-binding domain
BCG9842_RS01275	SM00732	Likely ribonuclease with RNase H fold.
BCG9842_RS01280	SM00731	SprT homologues.
BCG9842_RS01390	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS01395	SM00881	CoA binding domain
BCG9842_RS01410	SM00883	Chaperonin 10 Kd subunit
BCG9842_RS01430	SM00448	cheY-homologous receiver domain
BCG9842_RS01430	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS01435	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS01435	SM00387	Histidine kinase-like ATPases
BCG9842_RS01435	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS01505	SM01022	BCG9842_RS01505
BCG9842_RS01520	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS01525	SM00387	Histidine kinase-like ATPases
BCG9842_RS01525	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS01530	SM00448	cheY-homologous receiver domain
BCG9842_RS01530	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS01575	SM01001	AIR carboxylase
BCG9842_RS01585	SM00998	Adenylosuccinate lyase C-terminus
BCG9842_RS01600	SM01211	BCG9842_RS01600
BCG9842_RS01625	SM00798	AICARFT/IMPCHase bienzyme
BCG9842_RS01625	SM00851	MGS-like domain
BCG9842_RS01630	SM01209	BCG9842_RS01630
BCG9842_RS01630	SM01210	BCG9842_RS01630
BCG9842_RS01640	SM00244	prohibitin homologues
BCG9842_RS01660	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BCG9842_RS01660	SM00292	breast cancer carboxy-terminal domain
BCG9842_RS01660	SM00532	Ligase N family
BCG9842_RS01685	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS01685	SM00930	BCG9842_RS01685
BCG9842_RS01710	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS01730	SM00845	GatB domain
BCG9842_RS01735	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BCG9842_RS01750	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS01815	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BCG9842_RS01860	SM01007	Class II Aldolase and Adducin N-terminal domain
BCG9842_RS01915	SM00387	Histidine kinase-like ATPases
BCG9842_RS01915	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS01960	SM00062	Bacterial periplasmic substrate-binding proteins
BCG9842_RS01960	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BCG9842_RS01965	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS01970	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS01970	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS02000	SM00100	Cyclic nucleotide-monophosphate binding domain
BCG9842_RS02000	SM00419	helix_turn_helix, cAMP Regulatory protein
BCG9842_RS02015	SM00642	Alpha-amylase domain
BCG9842_RS02035	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BCG9842_RS02035	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BCG9842_RS02035	SM00493	BCG9842_RS02035
BCG9842_RS02055	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS02055	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS02080	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS02085	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS02090	SM00060	Fibronectin type 3 domain
BCG9842_RS02090	SM00636	BCG9842_RS02090
BCG9842_RS02090	SM00637	BCG9842_RS02090
BCG9842_RS02125	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS02145	SM00946	Prolyl-tRNA synthetase, C-terminal
BCG9842_RS02190	SM00831	Cation transporter/ATPase, N-terminus
BCG9842_RS02200	SM00226	Low molecular weight phosphatase family
BCG9842_RS02290	SM00478	endonuclease III
BCG9842_RS02315	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS02335	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS02380	SM00984	UDP binding domain
BCG9842_RS02460	SM00478	endonuclease III
BCG9842_RS02460	SM00525	BCG9842_RS02460
BCG9842_RS02485	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS02505	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS02665	SM00567	E-Z type HEAT repeats
BCG9842_RS02680	SM00052	Putative diguanylate phosphodiesterase
BCG9842_RS02680	SM00091	PAS domain
BCG9842_RS02680	SM00267	diguanylate cyclase
BCG9842_RS02685	SM00763	PrkA AAA domain
BCG9842_RS02695	SM00365	Leucine-rich repeat, SDS22-like subfamily
BCG9842_RS02695	SM00369	Leucine-rich repeats, typical (most populated) subfamily
BCG9842_RS02695	SM00725	NEAr Transporter domain
BCG9842_RS02705	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
BCG9842_RS02715	SM00244	prohibitin homologues
BCG9842_RS02720	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS02720	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS02725	SM00387	Histidine kinase-like ATPases
BCG9842_RS02730	SM00448	cheY-homologous receiver domain
BCG9842_RS02750	SM00248	ankyrin repeats
BCG9842_RS02765	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS02790	SM00448	cheY-homologous receiver domain
BCG9842_RS02790	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS02795	SM00387	Histidine kinase-like ATPases
BCG9842_RS02795	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS02810	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS02810	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS02815	SM00387	Histidine kinase-like ATPases
BCG9842_RS02820	SM00448	cheY-homologous receiver domain
BCG9842_RS02830	SM00919	Malic enzyme, NAD binding domain
BCG9842_RS02830	SM01274	BCG9842_RS02830
BCG9842_RS02845	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS02855	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS02855	SM00387	Histidine kinase-like ATPases
BCG9842_RS02855	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS02860	SM00448	cheY-homologous receiver domain
BCG9842_RS02860	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS02885	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BCG9842_RS02885	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BCG9842_RS02900	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BCG9842_RS02900	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BCG9842_RS02910	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS02925	SM00028	Tetratricopeptide repeats
BCG9842_RS02925	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS02970	SM01091	Transporter associated domain
BCG9842_RS02985	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS03015	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS03040	SM00327	von Willebrand factor (vWF) type A domain
BCG9842_RS03045	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS03050	SM00155	Phospholipase D. Active site motifs.
BCG9842_RS03060	SM00052	Putative diguanylate phosphodiesterase
BCG9842_RS03060	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BCG9842_RS03060	SM00267	diguanylate cyclase
BCG9842_RS03070	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS03070	SM00866	BCG9842_RS03070
BCG9842_RS03080	SM00642	Alpha-amylase domain
BCG9842_RS03115	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS03120	SM00062	Bacterial periplasmic substrate-binding proteins
BCG9842_RS03120	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BCG9842_RS03170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS03170	SM00387	Histidine kinase-like ATPases
BCG9842_RS03170	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS03175	SM00448	cheY-homologous receiver domain
BCG9842_RS03175	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS03205	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS03215	SM00354	helix_turn _helix lactose operon repressor
BCG9842_RS03230	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS03270	SM00829	Enoylreductase
BCG9842_RS03280	SM00770	Zinc dependent phospholipase C (alpha toxin)
BCG9842_RS03315	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS03325	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS03375	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS03470	SM00899	BCG9842_RS03470
BCG9842_RS03615	SM00116	Domain in cystathionine beta-synthase and other proteins.
BCG9842_RS03625	SM00507	HNH nucleases
BCG9842_RS03640	SM00287	Bacterial SH3 domain homologues
BCG9842_RS03650	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS03740	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS03850	SM00450	Rhodanese Homology Domain
BCG9842_RS03855	SM00450	Rhodanese Homology Domain
BCG9842_RS03855	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS03865	SM00450	Rhodanese Homology Domain
BCG9842_RS03870	SM00450	Rhodanese Homology Domain
BCG9842_RS03895	SM00829	Enoylreductase
BCG9842_RS03945	SM00287	Bacterial SH3 domain homologues
BCG9842_RS03955	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS04010	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
BCG9842_RS04110	SM00344	helix_turn_helix ASNC type
BCG9842_RS04125	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS04175	SM01060	BCG9842_RS04175
BCG9842_RS04195	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS04200	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS04205	SM00062	Bacterial periplasmic substrate-binding proteins
BCG9842_RS04205	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BCG9842_RS04215	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS04255	SM00387	Histidine kinase-like ATPases
BCG9842_RS04260	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS04260	SM00448	cheY-homologous receiver domain
BCG9842_RS04330	SM00644	BCG9842_RS04330
BCG9842_RS04335	SM00729	Elongator protein 3, MiaB family, Radical SAM
BCG9842_RS04365	SM00047	Lysozyme subfamily 2
BCG9842_RS04400	SM00646	BCG9842_RS04400
BCG9842_RS04440	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS04445	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS04455	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS04470	SM00823	Phosphopantetheine attachment site
BCG9842_RS04475	SM00998	Adenylosuccinate lyase C-terminus
BCG9842_RS04545	SM00860	SMI1 / KNR4 family
BCG9842_RS04550	SM00860	SMI1 / KNR4 family
BCG9842_RS04595	SM00091	PAS domain
BCG9842_RS04595	SM00387	Histidine kinase-like ATPases
BCG9842_RS04600	SM00448	cheY-homologous receiver domain
BCG9842_RS04715	SM00894	Excalibur calcium-binding domain
BCG9842_RS04775	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS04795	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS04825	SM00287	Bacterial SH3 domain homologues
BCG9842_RS04840	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS04855	SM00460	Transglutaminase/protease-like homologues
BCG9842_RS04935	SM00331	Sigma factor PP2C-like phosphatases
BCG9842_RS04935	SM00448	cheY-homologous receiver domain
BCG9842_RS04940	SM00138	Methyltransferase, chemotaxis proteins 
BCG9842_RS04945	SM00387	Histidine kinase-like ATPases
BCG9842_RS04945	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS04945	SM00448	cheY-homologous receiver domain
BCG9842_RS04980	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS04980	SM00895	BCG9842_RS04980
BCG9842_RS04985	SM00829	Enoylreductase
BCG9842_RS05020	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BCG9842_RS05045	SM00028	Tetratricopeptide repeats
BCG9842_RS05070	SM00835	Cupin
BCG9842_RS05075	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS05135	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS05150	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS05305	SM00354	helix_turn _helix lactose operon repressor
BCG9842_RS05315	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS05370	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BCG9842_RS05385	SM00342	helix_turn_helix, arabinose operon control protein
BCG9842_RS05385	SM00871	Bacterial transcription activator, effector binding domain
BCG9842_RS05395	SM00387	Histidine kinase-like ATPases
BCG9842_RS05395	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS05400	SM00448	cheY-homologous receiver domain
BCG9842_RS05400	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS05425	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS05425	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS05465	SM00357	Cold shock protein domain
BCG9842_RS05580	SM01060	BCG9842_RS05580
BCG9842_RS05590	SM00642	Alpha-amylase domain
BCG9842_RS05595	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS05605	SM00316	Ribosomal protein S1-like RNA-binding domain
BCG9842_RS05640	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS05640	SM01086	C-terminal, D2-small domain, of ClpB protein
BCG9842_RS05670	SM00825	Beta-ketoacyl synthase
BCG9842_RS05715	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS05720	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS05755	SM00155	Phospholipase D. Active site motifs.
BCG9842_RS05780	SM01118	BCG9842_RS05780
BCG9842_RS05790	SM00954	Region found in RelA / SpoT proteins
BCG9842_RS05945	SM00635	Bacterial Ig-like domain 2
BCG9842_RS06000	SM00661	RNA polymerase subunit 9
BCG9842_RS06020	SM01324	BCG9842_RS06020
BCG9842_RS06065	SM00861	Transketolase, pyrimidine binding domain
BCG9842_RS06070	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS06105	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS06165	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS06185	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS06205	SM00014	Acid phosphatase homologues
BCG9842_RS06255	SM00448	cheY-homologous receiver domain
BCG9842_RS06255	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS06260	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS06260	SM00387	Histidine kinase-like ATPases
BCG9842_RS06260	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS06265	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS06265	SM00895	BCG9842_RS06265
BCG9842_RS06335	SM00822	BCG9842_RS06335
BCG9842_RS06370	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS06395	SM00420	helix_turn_helix, Deoxyribose operon repressor
BCG9842_RS06395	SM01134	BCG9842_RS06395
BCG9842_RS06405	SM00365	Leucine-rich repeat, SDS22-like subfamily
BCG9842_RS06405	SM00369	Leucine-rich repeats, typical (most populated) subfamily
BCG9842_RS06405	SM00725	NEAr Transporter domain
BCG9842_RS06410	SM01007	Class II Aldolase and Adducin N-terminal domain
BCG9842_RS06430	SM00387	Histidine kinase-like ATPases
BCG9842_RS06430	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS06435	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS06455	SM00387	Histidine kinase-like ATPases
BCG9842_RS06455	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS06525	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS06530	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS06540	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS06560	SM00344	helix_turn_helix ASNC type
BCG9842_RS06680	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS06745	SM00917	LeuA allosteric (dimerisation) domain
BCG9842_RS06750	SM01329	BCG9842_RS06750
BCG9842_RS06930	SM00387	Histidine kinase-like ATPases
BCG9842_RS06935	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS06935	SM00448	cheY-homologous receiver domain
BCG9842_RS07025	SM00091	PAS domain
BCG9842_RS07025	SM00387	Histidine kinase-like ATPases
BCG9842_RS07025	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS07045	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS07045	SM00387	Histidine kinase-like ATPases
BCG9842_RS07045	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS07095	SM00363	S4 RNA-binding domain
BCG9842_RS07115	SM00448	cheY-homologous receiver domain
BCG9842_RS07115	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS07120	SM00091	PAS domain
BCG9842_RS07120	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS07120	SM00387	Histidine kinase-like ATPases
BCG9842_RS07120	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS07130	SM00257	Lysin motif
BCG9842_RS07155	SM00487	DEAD-like helicases superfamily
BCG9842_RS07155	SM00490	helicase superfamily c-terminal domain
BCG9842_RS07165	SM00257	Lysin motif
BCG9842_RS07175	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS07185	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BCG9842_RS07200	SM00644	BCG9842_RS07200
BCG9842_RS07210	SM00870	BCG9842_RS07210
BCG9842_RS07220	SM00316	Ribosomal protein S1-like RNA-binding domain
BCG9842_RS07225	SM01240	BCG9842_RS07225
BCG9842_RS07280	SM00411	bacterial (prokaryotic) histone like domain
BCG9842_RS07305	SM00562	BCG9842_RS07305
BCG9842_RS07325	SM00028	Tetratricopeptide repeats
BCG9842_RS07330	SM00914	BCG9842_RS07330
BCG9842_RS07375	SM00986	Uracil DNA glycosylase superfamily
BCG9842_RS07375	SM00987	UreE urease accessory protein, C-terminal domain 
BCG9842_RS07395	SM00851	MGS-like domain
BCG9842_RS07440	SM00479	BCG9842_RS07440
BCG9842_RS07440	SM00487	DEAD-like helicases superfamily
BCG9842_RS07440	SM00491	BCG9842_RS07440
BCG9842_RS07465	SM00478	endonuclease III
BCG9842_RS07525	SM00981	BCG9842_RS07525
BCG9842_RS07535	SM00491	BCG9842_RS07535
BCG9842_RS07595	SM00450	Rhodanese Homology Domain
BCG9842_RS07625	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BCG9842_RS07625	SM00475	5'-3' exonuclease
BCG9842_RS07735	SM00357	Cold shock protein domain
BCG9842_RS07785	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS07790	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS07790	SM00871	Bacterial transcription activator, effector binding domain
BCG9842_RS07870	SM00448	cheY-homologous receiver domain
BCG9842_RS07875	SM00073	Histidine Phosphotransfer domain
BCG9842_RS07875	SM00260	Two component signalling adaptor domain
BCG9842_RS07875	SM00387	Histidine kinase-like ATPases
BCG9842_RS07875	SM01231	BCG9842_RS07875
BCG9842_RS07895	SM00138	Methyltransferase, chemotaxis proteins 
BCG9842_RS07970	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS08005	SM00260	Two component signalling adaptor domain
BCG9842_RS08005	SM00448	cheY-homologous receiver domain
BCG9842_RS08090	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS08090	SM00962	SRP54-type protein, GTPase domain
BCG9842_RS08105	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BCG9842_RS08150	SM00028	Tetratricopeptide repeats
BCG9842_RS08150	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS08170	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS08185	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS08185	SM01027	Beta-Casp domain
BCG9842_RS08215	SM00855	Phosphoglycerate mutase family
BCG9842_RS08235	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS08280	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BCG9842_RS08305	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS08375	SM00028	Tetratricopeptide repeats
BCG9842_RS08385	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS08420	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS08420	SM00448	cheY-homologous receiver domain
BCG9842_RS08430	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS08445	SM00155	Phospholipase D. Active site motifs.
BCG9842_RS08465	SM00919	Malic enzyme, NAD binding domain
BCG9842_RS08465	SM01274	BCG9842_RS08465
BCG9842_RS08470	SM00387	Histidine kinase-like ATPases
BCG9842_RS08475	SM00448	cheY-homologous receiver domain
BCG9842_RS08480	SM00487	DEAD-like helicases superfamily
BCG9842_RS08480	SM00490	helicase superfamily c-terminal domain
BCG9842_RS08670	SM00854	Bacterial capsule synthesis protein PGA_cap
BCG9842_RS08700	SM00850	LytTr DNA-binding domain
BCG9842_RS08735	SM00448	cheY-homologous receiver domain
BCG9842_RS08735	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS08740	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS08740	SM00387	Histidine kinase-like ATPases
BCG9842_RS08740	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS08755	SM00450	Rhodanese Homology Domain
BCG9842_RS08835	SM01133	BCG9842_RS08835
BCG9842_RS08845	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
BCG9842_RS08905	SM01011	Aminopeptidase P, N-terminal domain
BCG9842_RS08925	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BCG9842_RS08925	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BCG9842_RS08925	SM00493	BCG9842_RS08925
BCG9842_RS09015	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BCG9842_RS09025	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS09030	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS09100	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS09135	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS09155	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS09160	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS09225	SM00287	Bacterial SH3 domain homologues
BCG9842_RS09235	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS09240	SM00448	cheY-homologous receiver domain
BCG9842_RS09240	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS09245	SM00387	Histidine kinase-like ATPases
BCG9842_RS09245	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS09385	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS09410	SM00460	Transglutaminase/protease-like homologues
BCG9842_RS09515	SM00857	Resolvase, N terminal domain
BCG9842_RS09530	SM00966	SpoVT / AbrB like domain 
BCG9842_RS09540	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS09575	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS09575	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS09635	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BCG9842_RS09690	SM00855	Phosphoglycerate mutase family
BCG9842_RS09740	SM00155	Phospholipase D. Active site motifs.
BCG9842_RS09765	SM01091	Transporter associated domain
BCG9842_RS09845	SM00244	prohibitin homologues
BCG9842_RS09855	SM00855	Phosphoglycerate mutase family
BCG9842_RS09865	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS09880	SM01005	Alanine racemase, C-terminal domain
BCG9842_RS09910	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS10080	SM00487	DEAD-like helicases superfamily
BCG9842_RS10080	SM00490	helicase superfamily c-terminal domain
BCG9842_RS10100	SM00829	Enoylreductase
BCG9842_RS10125	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS10140	SM00460	Transglutaminase/protease-like homologues
BCG9842_RS10155	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BCG9842_RS10175	SM00100	Cyclic nucleotide-monophosphate binding domain
BCG9842_RS10175	SM00419	helix_turn_helix, cAMP Regulatory protein
BCG9842_RS10180	SM00729	Elongator protein 3, MiaB family, Radical SAM
BCG9842_RS10190	SM00852	Probable molybdopterin binding domain
BCG9842_RS10250	SM00894	Excalibur calcium-binding domain
BCG9842_RS10295	SM00028	Tetratricopeptide repeats
BCG9842_RS10310	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BCG9842_RS10315	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS10340	SM00567	E-Z type HEAT repeats
BCG9842_RS10340	SM00932	Scaffold protein Nfu/NifU N terminal
BCG9842_RS10360	SM00836	DALR anticodon binding domain
BCG9842_RS10360	SM01016	Arginyl tRNA synthetase N terminal dom
BCG9842_RS10385	SM00028	Tetratricopeptide repeats
BCG9842_RS10535	SM00563	Phosphate acyltransferases
BCG9842_RS10595	SM00646	BCG9842_RS10595
BCG9842_RS10640	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BCG9842_RS10645	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS10645	SM00448	cheY-homologous receiver domain
BCG9842_RS10660	SM00829	Enoylreductase
BCG9842_RS10685	SM01350	BCG9842_RS10685
BCG9842_RS10720	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS10760	SM01091	Transporter associated domain
BCG9842_RS10790	SM00882	Coenzyme A transferase
BCG9842_RS10795	SM00882	Coenzyme A transferase
BCG9842_RS10810	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS10845	SM00219	Tyrosine kinase, catalytic domain
BCG9842_RS10855	SM00014	Acid phosphatase homologues
BCG9842_RS11045	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS11080	SM00823	Phosphopantetheine attachment site
BCG9842_RS11080	SM00824	Thioesterase
BCG9842_RS11085	SM00923	MbtH-like protein
BCG9842_RS11105	SM00411	bacterial (prokaryotic) histone like domain
BCG9842_RS11145	SM00363	S4 RNA-binding domain
BCG9842_RS11150	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BCG9842_RS11155	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS11170	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS11195	SM00100	Cyclic nucleotide-monophosphate binding domain
BCG9842_RS11215	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS11235	SM01059	Chloramphenicol acetyltransferase
BCG9842_RS11260	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS11295	SM00357	Cold shock protein domain
BCG9842_RS11320	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BCG9842_RS11350	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS11355	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS11380	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS11400	SM00835	Cupin
BCG9842_RS11470	SM01207	BCG9842_RS11470
BCG9842_RS11485	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS11500	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS11510	SM00487	DEAD-like helicases superfamily
BCG9842_RS11510	SM00490	helicase superfamily c-terminal domain
BCG9842_RS11535	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS11540	SM00855	Phosphoglycerate mutase family
BCG9842_RS11580	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS11585	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS11590	SM00966	SpoVT / AbrB like domain 
BCG9842_RS11610	SM00936	Penicillin-binding protein 5, C-terminal domain 
BCG9842_RS11635	SM00823	Phosphopantetheine attachment site
BCG9842_RS11640	SM00823	Phosphopantetheine attachment site
BCG9842_RS11720	SM00984	UDP binding domain
BCG9842_RS11795	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS11810	SM00047	Lysozyme subfamily 2
BCG9842_RS11815	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS11900	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS11930	SM00878	Biotin carboxylase C-terminal domain
BCG9842_RS11995	SM00387	Histidine kinase-like ATPases
BCG9842_RS11995	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS12000	SM00448	cheY-homologous receiver domain
BCG9842_RS12000	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS12040	SM00342	helix_turn_helix, arabinose operon control protein
BCG9842_RS12070	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS12075	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS12075	SM00871	Bacterial transcription activator, effector binding domain
BCG9842_RS12115	SM00342	helix_turn_helix, arabinose operon control protein
BCG9842_RS12130	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS12190	SM00448	cheY-homologous receiver domain
BCG9842_RS12190	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS12195	SM00387	Histidine kinase-like ATPases
BCG9842_RS12210	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS12225	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS12255	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS12260	SM01209	BCG9842_RS12260
BCG9842_RS12305	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS12335	SM00966	SpoVT / AbrB like domain 
BCG9842_RS12435	SM00507	HNH nucleases
BCG9842_RS12530	SM00287	Bacterial SH3 domain homologues
BCG9842_RS12530	SM00644	BCG9842_RS12530
BCG9842_RS12620	SM00091	PAS domain
BCG9842_RS12620	SM00387	Histidine kinase-like ATPases
BCG9842_RS12620	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS12650	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS12660	SM00387	Histidine kinase-like ATPases
BCG9842_RS12660	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS12720	SM00342	helix_turn_helix, arabinose operon control protein
BCG9842_RS12750	SM00829	Enoylreductase
BCG9842_RS12755	SM00014	Acid phosphatase homologues
BCG9842_RS12760	SM00740	BCG9842_RS12760
BCG9842_RS12800	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS12825	SM00287	Bacterial SH3 domain homologues
BCG9842_RS12840	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS12905	SM00480	DNA polymerase III beta subunit
BCG9842_RS12995	SM00465	GIY-YIG type nucleases (URI domain)
BCG9842_RS13100	SM00448	cheY-homologous receiver domain
BCG9842_RS13100	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS13105	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS13105	SM00387	Histidine kinase-like ATPases
BCG9842_RS13105	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS13120	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS13155	SM00642	Alpha-amylase domain
BCG9842_RS13175	SM00871	Bacterial transcription activator, effector binding domain
BCG9842_RS13195	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS13310	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS13330	SM00420	helix_turn_helix, Deoxyribose operon repressor
BCG9842_RS13330	SM01134	BCG9842_RS13330
BCG9842_RS13370	SM00861	Transketolase, pyrimidine binding domain
BCG9842_RS13435	SM00116	Domain in cystathionine beta-synthase and other proteins.
BCG9842_RS13435	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS13485	SM00060	Fibronectin type 3 domain
BCG9842_RS13485	SM00495	Chitin-binding domain type 3
BCG9842_RS13590	SM00341	Helicase and RNase D C-terminal
BCG9842_RS13590	SM00487	DEAD-like helicases superfamily
BCG9842_RS13590	SM00490	helicase superfamily c-terminal domain
BCG9842_RS13590	SM00956	BCG9842_RS13590
BCG9842_RS13615	SM00646	BCG9842_RS13615
BCG9842_RS13640	SM01131	BCG9842_RS13640
BCG9842_RS13655	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BCG9842_RS13675	SM01130	BCG9842_RS13675
BCG9842_RS13695	SM00091	PAS domain
BCG9842_RS13695	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS13730	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BCG9842_RS13765	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BCG9842_RS13790	SM00248	ankyrin repeats
BCG9842_RS13815	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BCG9842_RS13820	SM00857	Resolvase, N terminal domain
BCG9842_RS13865	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS13870	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS13895	SM00644	BCG9842_RS13895
BCG9842_RS14050	SM00966	SpoVT / AbrB like domain 
BCG9842_RS14090	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS14090	SM00387	Histidine kinase-like ATPases
BCG9842_RS14090	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS14095	SM00448	cheY-homologous receiver domain
BCG9842_RS14095	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS14295	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS14300	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS14360	SM00062	Bacterial periplasmic substrate-binding proteins
BCG9842_RS14365	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS14380	SM00028	Tetratricopeptide repeats
BCG9842_RS14440	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS14480	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS14520	SM00830	Chorismate mutase type II
BCG9842_RS14550	SM00287	Bacterial SH3 domain homologues
BCG9842_RS14595	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS14615	SM01133	BCG9842_RS14615
BCG9842_RS14640	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS14655	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BCG9842_RS14670	SM00346	helix_turn_helix isocitrate lyase regulation
BCG9842_RS14705	SM00098	Alkaline phosphatase homologues
BCG9842_RS14715	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS14790	SM01060	BCG9842_RS14790
BCG9842_RS14865	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS14870	SM00889	Elongation factor G, domain IV
BCG9842_RS14885	SM00773	Proposed nucleic acid binding domain
BCG9842_RS14895	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS14915	SM00342	helix_turn_helix, arabinose operon control protein
BCG9842_RS14915	SM00871	Bacterial transcription activator, effector binding domain
BCG9842_RS14940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS15040	SM01058	CarD-like/TRCF domain
BCG9842_RS15105	SM00797	Allophanate hydrolase subunit 2
BCG9842_RS15110	SM00796	Allophanate hydrolase subunit 1
BCG9842_RS15115	SM00346	helix_turn_helix isocitrate lyase regulation
BCG9842_RS15130	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS15200	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS15235	SM00870	BCG9842_RS15235
BCG9842_RS15240	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS15260	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BCG9842_RS15260	SM00091	PAS domain
BCG9842_RS15260	SM00387	Histidine kinase-like ATPases
BCG9842_RS15260	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS15290	SM00465	GIY-YIG type nucleases (URI domain)
BCG9842_RS15320	SM00448	cheY-homologous receiver domain
BCG9842_RS15325	SM00387	Histidine kinase-like ATPases
BCG9842_RS15395	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS15490	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS15505	SM00226	Low molecular weight phosphatase family
BCG9842_RS15520	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS15595	SM00344	helix_turn_helix ASNC type
BCG9842_RS15635	SM00448	cheY-homologous receiver domain
BCG9842_RS15635	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS15640	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS15640	SM00387	Histidine kinase-like ATPases
BCG9842_RS15640	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS15675	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS15675	SM00448	cheY-homologous receiver domain
BCG9842_RS15690	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS15695	SM00387	Histidine kinase-like ATPases
BCG9842_RS15695	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS15700	SM00448	cheY-homologous receiver domain
BCG9842_RS15700	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS15775	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS15785	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS15785	SM00387	Histidine kinase-like ATPases
BCG9842_RS15785	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS15790	SM00448	cheY-homologous receiver domain
BCG9842_RS15790	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS15800	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS15875	SM00342	helix_turn_helix, arabinose operon control protein
BCG9842_RS15895	SM00644	BCG9842_RS15895
BCG9842_RS16025	SM00860	SMI1 / KNR4 family
BCG9842_RS16065	SM00857	Resolvase, N terminal domain
BCG9842_RS16105	SM00854	Bacterial capsule synthesis protein PGA_cap
BCG9842_RS16130	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS16185	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS16295	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS16310	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS16370	SM01266	BCG9842_RS16370
BCG9842_RS16435	SM00028	Tetratricopeptide repeats
BCG9842_RS16460	SM01091	Transporter associated domain
BCG9842_RS16465	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS16510	SM01350	BCG9842_RS16510
BCG9842_RS16515	SM00861	Transketolase, pyrimidine binding domain
BCG9842_RS16545	SM00914	BCG9842_RS16545
BCG9842_RS16570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS16570	SM00866	BCG9842_RS16570
BCG9842_RS16595	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS16655	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS16660	SM00636	BCG9842_RS16660
BCG9842_RS16680	SM00871	Bacterial transcription activator, effector binding domain
BCG9842_RS16685	SM00420	helix_turn_helix, Deoxyribose operon repressor
BCG9842_RS16695	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS16720	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS16780	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS16785	SM00829	Enoylreductase
BCG9842_RS16895	SM00829	Enoylreductase
BCG9842_RS16900	SM00855	Phosphoglycerate mutase family
BCG9842_RS16910	SM00507	HNH nucleases
BCG9842_RS16915	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BCG9842_RS16915	SM00534	ATPase domain of DNA mismatch repair MUTS family
BCG9842_RS16925	SM00642	Alpha-amylase domain
BCG9842_RS16945	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS16945	SM00871	Bacterial transcription activator, effector binding domain
BCG9842_RS17005	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS17010	SM00829	Enoylreductase
BCG9842_RS17020	SM00028	Tetratricopeptide repeats
BCG9842_RS17050	SM00450	Rhodanese Homology Domain
BCG9842_RS17050	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS17080	SM00858	BCG9842_RS17080
BCG9842_RS17135	SM00148	Phospholipase C, catalytic domain (part); domain X
BCG9842_RS17140	SM00060	Fibronectin type 3 domain
BCG9842_RS17140	SM00495	Chitin-binding domain type 3
BCG9842_RS17190	SM00028	Tetratricopeptide repeats
BCG9842_RS17200	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS17200	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS17200	SM00319	Homologues of the ligand binding domain of Tar
BCG9842_RS17220	SM01276	BCG9842_RS17220
BCG9842_RS17235	SM00052	Putative diguanylate phosphodiesterase
BCG9842_RS17235	SM00091	PAS domain
BCG9842_RS17235	SM00267	diguanylate cyclase
BCG9842_RS17245	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS17260	SM00646	BCG9842_RS17260
BCG9842_RS17290	SM00387	Histidine kinase-like ATPases
BCG9842_RS17290	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS17295	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
BCG9842_RS17335	SM00479	BCG9842_RS17335
BCG9842_RS17340	SM00357	Cold shock protein domain
BCG9842_RS17365	SM01022	BCG9842_RS17365
BCG9842_RS17420	SM00822	BCG9842_RS17420
BCG9842_RS17475	SM00852	Probable molybdopterin binding domain
BCG9842_RS17490	SM00729	Elongator protein 3, MiaB family, Radical SAM
BCG9842_RS17510	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BCG9842_RS17510	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BCG9842_RS17610	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS17620	SM00420	helix_turn_helix, Deoxyribose operon repressor
BCG9842_RS17635	SM00434	DNA Topoisomerase IV
BCG9842_RS17640	SM00387	Histidine kinase-like ATPases
BCG9842_RS17640	SM00433	TopoisomeraseII
BCG9842_RS17645	SM00881	CoA binding domain
BCG9842_RS17650	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BCG9842_RS17655	SM00448	cheY-homologous receiver domain
BCG9842_RS17655	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS17670	SM01207	BCG9842_RS17670
BCG9842_RS17685	SM00257	Lysin motif
BCG9842_RS17685	SM00636	BCG9842_RS17685
BCG9842_RS17700	SM00479	BCG9842_RS17700
BCG9842_RS17715	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS17760	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BCG9842_RS17795	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS17820	SM00644	BCG9842_RS17820
BCG9842_RS17820	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
BCG9842_RS17825	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BCG9842_RS17840	SM00091	PAS domain
BCG9842_RS17840	SM00387	Histidine kinase-like ATPases
BCG9842_RS17840	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS17875	SM01058	CarD-like/TRCF domain
BCG9842_RS17955	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS18020	SM00287	Bacterial SH3 domain homologues
BCG9842_RS18020	SM00641	Glycosyl hydrolases family 25
BCG9842_RS18025	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS18030	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS18045	SM00861	Transketolase, pyrimidine binding domain
BCG9842_RS18060	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS18065	SM00062	Bacterial periplasmic substrate-binding proteins
BCG9842_RS18080	SM00857	Resolvase, N terminal domain
BCG9842_RS18145	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS18150	SM01230	BCG9842_RS18150
BCG9842_RS18155	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS18180	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS18210	SM00287	Bacterial SH3 domain homologues
BCG9842_RS18225	SM00420	helix_turn_helix, Deoxyribose operon repressor
BCG9842_RS18225	SM01134	BCG9842_RS18225
BCG9842_RS18255	SM00636	BCG9842_RS18255
BCG9842_RS18275	SM00411	bacterial (prokaryotic) histone like domain
BCG9842_RS18305	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS18320	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS18345	SM00342	helix_turn_helix, arabinose operon control protein
BCG9842_RS18355	SM00478	endonuclease III
BCG9842_RS18385	SM00052	Putative diguanylate phosphodiesterase
BCG9842_RS18385	SM00091	PAS domain
BCG9842_RS18385	SM00267	diguanylate cyclase
BCG9842_RS18430	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS18445	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS18445	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS18450	SM00148	Phospholipase C, catalytic domain (part); domain X
BCG9842_RS18460	SM00257	Lysin motif
BCG9842_RS18485	SM00853	MutL C terminal dimerisation domain
BCG9842_RS18485	SM01340	BCG9842_RS18485
BCG9842_RS18490	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BCG9842_RS18490	SM00534	ATPase domain of DNA mismatch repair MUTS family
BCG9842_RS18505	SM00729	Elongator protein 3, MiaB family, Radical SAM
BCG9842_RS18535	SM00322	K homology RNA-binding domain
BCG9842_RS18535	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BCG9842_RS18545	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS18550	SM00852	Probable molybdopterin binding domain
BCG9842_RS18600	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS18610	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS18610	SM00866	BCG9842_RS18610
BCG9842_RS18615	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS18615	SM00843	BCG9842_RS18615
BCG9842_RS18630	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS18635	SM01130	BCG9842_RS18635
BCG9842_RS18645	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BCG9842_RS18765	SM00507	HNH nucleases
BCG9842_RS18785	SM00357	Cold shock protein domain
BCG9842_RS18875	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS18880	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS18900	SM00857	Resolvase, N terminal domain
BCG9842_RS18930	SM00316	Ribosomal protein S1-like RNA-binding domain
BCG9842_RS18930	SM00322	K homology RNA-binding domain
BCG9842_RS18935	SM01387	BCG9842_RS18935
BCG9842_RS18940	SM00904	Riboflavin kinase
BCG9842_RS18975	SM00316	Ribosomal protein S1-like RNA-binding domain
BCG9842_RS18975	SM00322	K homology RNA-binding domain
BCG9842_RS18985	SM00479	BCG9842_RS18985
BCG9842_RS18985	SM00481	DNA polymerase alpha chain like domain
BCG9842_RS18995	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BCG9842_RS19040	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS19040	SM01086	C-terminal, D2-small domain, of ClpB protein
BCG9842_RS19060	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BCG9842_RS19060	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BCG9842_RS19060	SM00493	BCG9842_RS19060
BCG9842_RS19070	SM00881	CoA binding domain
BCG9842_RS19120	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS19120	SM00962	SRP54-type protein, GTPase domain
BCG9842_RS19120	SM00963	SRP54-type protein, helical bundle domain
BCG9842_RS19130	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS19130	SM00962	SRP54-type protein, GTPase domain
BCG9842_RS19130	SM00963	SRP54-type protein, helical bundle domain
BCG9842_RS19135	SM00968	SMC proteins Flexible Hinge Domain
BCG9842_RS19140	SM00358	Double-stranded RNA binding motif
BCG9842_RS19140	SM00535	Ribonuclease III family
BCG9842_RS19150	SM00822	BCG9842_RS19150
BCG9842_RS19155	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BCG9842_RS19170	SM00487	DEAD-like helicases superfamily
BCG9842_RS19170	SM00490	helicase superfamily c-terminal domain
BCG9842_RS19175	SM01120	BCG9842_RS19175
BCG9842_RS19175	SM01121	BCG9842_RS19175
BCG9842_RS19195	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
BCG9842_RS19210	SM00220	Serine/Threonine protein kinases, catalytic domain
BCG9842_RS19210	SM00740	BCG9842_RS19210
BCG9842_RS19215	SM00331	Sigma factor PP2C-like phosphatases
BCG9842_RS19215	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BCG9842_RS19240	SM00487	DEAD-like helicases superfamily
BCG9842_RS19240	SM00490	helicase superfamily c-terminal domain
BCG9842_RS19250	SM01409	BCG9842_RS19250
BCG9842_RS19255	SM00072	Guanylate kinase homologues.
BCG9842_RS19270	SM00831	Cation transporter/ATPase, N-terminus
BCG9842_RS19315	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BCG9842_RS19330	SM00851	MGS-like domain
BCG9842_RS19330	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BCG9842_RS19330	SM01209	BCG9842_RS19330
BCG9842_RS19335	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
BCG9842_RS19360	SM00363	S4 RNA-binding domain
BCG9842_RS19385	SM00363	S4 RNA-binding domain
BCG9842_RS19430	SM00864	Tubulin/FtsZ family, GTPase domain
BCG9842_RS19430	SM00865	Tubulin/FtsZ family, C-terminal domain
BCG9842_RS19435	SM00842	Cell division protein FtsA
BCG9842_RS19475	SM00740	BCG9842_RS19475
BCG9842_RS19480	SM00740	BCG9842_RS19480
BCG9842_RS19510	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
BCG9842_RS19540	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BCG9842_RS19580	SM00855	Phosphoglycerate mutase family
BCG9842_RS19645	SM00878	Biotin carboxylase C-terminal domain
BCG9842_RS19665	SM00670	Large family of predicted nucleotide-binding domains
BCG9842_RS19690	SM00838	Elongation factor G C-terminus
BCG9842_RS19770	SM00861	Transketolase, pyrimidine binding domain
BCG9842_RS19800	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS19865	SM00052	Putative diguanylate phosphodiesterase
BCG9842_RS19905	SM00267	diguanylate cyclase
BCG9842_RS19950	SM00387	Histidine kinase-like ATPases
BCG9842_RS19950	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS19965	SM00354	helix_turn _helix lactose operon repressor
BCG9842_RS19985	SM00642	Alpha-amylase domain
BCG9842_RS19990	SM00642	Alpha-amylase domain
BCG9842_RS19995	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS20030	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS20115	SM01007	Class II Aldolase and Adducin N-terminal domain
BCG9842_RS20145	SM00267	diguanylate cyclase
BCG9842_RS20180	SM01061	CAT RNA binding domain
BCG9842_RS20190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS20190	SM00866	BCG9842_RS20190
BCG9842_RS20205	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS20295	SM00387	Histidine kinase-like ATPases
BCG9842_RS20305	SM00936	Penicillin-binding protein 5, C-terminal domain 
BCG9842_RS20310	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS20315	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS20340	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS20360	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
BCG9842_RS20455	SM00354	helix_turn _helix lactose operon repressor
BCG9842_RS20475	SM00704	CDGSH-type zinc finger. Function unknown.
BCG9842_RS20505	SM00729	Elongator protein 3, MiaB family, Radical SAM
BCG9842_RS20505	SM00876	Biotin and Thiamin Synthesis associated domain
BCG9842_RS20555	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS20590	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BCG9842_RS20605	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS20630	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS20645	SM00831	Cation transporter/ATPase, N-terminus
BCG9842_RS20685	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS20695	SM00062	Bacterial periplasmic substrate-binding proteins
BCG9842_RS20695	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BCG9842_RS20730	SM00861	Transketolase, pyrimidine binding domain
BCG9842_RS20750	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BCG9842_RS20760	SM00091	PAS domain
BCG9842_RS20760	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS20785	SM00448	cheY-homologous receiver domain
BCG9842_RS20790	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BCG9842_RS20805	SM00363	S4 RNA-binding domain
BCG9842_RS20810	SM00861	Transketolase, pyrimidine binding domain
BCG9842_RS20845	SM00878	Biotin carboxylase C-terminal domain
BCG9842_RS20890	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS20910	SM00841	Elongation factor P, C-terminal
BCG9842_RS20910	SM01185	BCG9842_RS20910
BCG9842_RS20945	SM00529	Helix-turn-helix diphteria tox regulatory element
BCG9842_RS20975	SM00450	Rhodanese Homology Domain
BCG9842_RS20985	SM00354	helix_turn _helix lactose operon repressor
BCG9842_RS21040	SM00487	DEAD-like helicases superfamily
BCG9842_RS21040	SM00490	helicase superfamily c-terminal domain
BCG9842_RS21075	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
BCG9842_RS21130	SM01321	BCG9842_RS21130
BCG9842_RS21190	SM01018	B12 binding domain
BCG9842_RS21215	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS21225	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS21265	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS21330	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS21345	SM00518	AP endonuclease family 2
BCG9842_RS21350	SM00487	DEAD-like helicases superfamily
BCG9842_RS21350	SM00490	helicase superfamily c-terminal domain
BCG9842_RS21385	SM00400	zinc finger
BCG9842_RS21385	SM00493	BCG9842_RS21385
BCG9842_RS21385	SM00766	DNA primase DnaG DnaB-binding
BCG9842_RS21395	SM00116	Domain in cystathionine beta-synthase and other proteins.
BCG9842_RS21430	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BCG9842_RS21460	SM00729	Elongator protein 3, MiaB family, Radical SAM
BCG9842_RS21475	SM00271	DnaJ molecular chaperone homology domain
BCG9842_RS21495	SM00729	Elongator protein 3, MiaB family, Radical SAM
BCG9842_RS21505	SM00838	Elongation factor G C-terminus
BCG9842_RS21535	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS21545	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BCG9842_RS21565	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BCG9842_RS21575	SM01103	BCG9842_RS21575
BCG9842_RS21630	SM00954	Region found in RelA / SpoT proteins
BCG9842_RS21640	SM00098	Alkaline phosphatase homologues
BCG9842_RS21665	SM00855	Phosphoglycerate mutase family
BCG9842_RS21710	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS21735	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS21835	SM00732	Likely ribonuclease with RNase H fold.
BCG9842_RS21845	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BCG9842_RS21880	SM00028	Tetratricopeptide repeats
BCG9842_RS21900	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS21940	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BCG9842_RS21940	SM00954	Region found in RelA / SpoT proteins
BCG9842_RS21985	SM01323	BCG9842_RS21985
BCG9842_RS22005	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS22010	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BCG9842_RS22035	SM00257	Lysin motif
BCG9842_RS22090	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS22095	SM00387	Histidine kinase-like ATPases
BCG9842_RS22100	SM00448	cheY-homologous receiver domain
BCG9842_RS22100	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS22110	SM01317	BCG9842_RS22110
BCG9842_RS22200	SM00257	Lysin motif
BCG9842_RS22210	SM01004	Delta-aminolevulinic acid dehydratase
BCG9842_RS22235	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS22250	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS22250	SM00464	Found in ATP-dependent protease La (LON)
BCG9842_RS22255	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS22260	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS22260	SM00994	ClpX C4-type zinc finger
BCG9842_RS22260	SM01086	C-terminal, D2-small domain, of ClpB protein
BCG9842_RS22310	SM00909	Sporulation and spore germination
BCG9842_RS22340	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS22360	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS22385	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS22435	SM00465	GIY-YIG type nucleases (URI domain)
BCG9842_RS22445	SM00893	Electron transfer flavoprotein domain
BCG9842_RS22450	SM00893	Electron transfer flavoprotein domain
BCG9842_RS22505	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS22510	SM00387	Histidine kinase-like ATPases
BCG9842_RS22510	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS22515	SM00448	cheY-homologous receiver domain
BCG9842_RS22515	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS22530	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BCG9842_RS22545	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS22560	SM00725	NEAr Transporter domain
BCG9842_RS22565	SM00725	NEAr Transporter domain
BCG9842_RS22570	SM00725	NEAr Transporter domain
BCG9842_RS22580	SM00363	S4 RNA-binding domain
BCG9842_RS22585	SM00463	Small MutS-related domain
BCG9842_RS22585	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BCG9842_RS22585	SM00534	ATPase domain of DNA mismatch repair MUTS family
BCG9842_RS22590	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BCG9842_RS22590	SM00481	DNA polymerase alpha chain like domain
BCG9842_RS22590	SM00483	DNA polymerase X family
BCG9842_RS22625	SM00873	B3/4 domain
BCG9842_RS22625	SM00874	tRNA synthetase B5 domain
BCG9842_RS22625	SM00896	Ferredoxin-fold anticodon binding domain
BCG9842_RS22635	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BCG9842_RS22700	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BCG9842_RS22715	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS22735	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BCG9842_RS22750	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BCG9842_RS22750	SM01232	BCG9842_RS22750
BCG9842_RS22755	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BCG9842_RS22755	SM00474	3'-5' exonuclease
BCG9842_RS22755	SM00475	5'-3' exonuclease
BCG9842_RS22755	SM00482	DNA polymerase A domain
BCG9842_RS22760	SM00091	PAS domain
BCG9842_RS22760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS22760	SM00387	Histidine kinase-like ATPases
BCG9842_RS22760	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS22765	SM00448	cheY-homologous receiver domain
BCG9842_RS22765	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS22785	SM01329	BCG9842_RS22785
BCG9842_RS22830	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS22835	SM00919	Malic enzyme, NAD binding domain
BCG9842_RS22835	SM01274	BCG9842_RS22835
BCG9842_RS22840	SM00481	DNA polymerase alpha chain like domain
BCG9842_RS22870	SM00116	Domain in cystathionine beta-synthase and other proteins.
BCG9842_RS22880	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS22930	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BCG9842_RS22930	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BCG9842_RS23050	SM00981	BCG9842_RS23050
BCG9842_RS23090	SM00363	S4 RNA-binding domain
BCG9842_RS23090	SM01390	BCG9842_RS23090
BCG9842_RS23115	SM00363	S4 RNA-binding domain
BCG9842_RS23120	SM01266	BCG9842_RS23120
BCG9842_RS23135	SM00116	Domain in cystathionine beta-synthase and other proteins.
BCG9842_RS23155	SM00448	cheY-homologous receiver domain
BCG9842_RS23155	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS23160	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS23160	SM00387	Histidine kinase-like ATPases
BCG9842_RS23160	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS23165	SM00248	ankyrin repeats
BCG9842_RS23200	SM00354	helix_turn _helix lactose operon repressor
BCG9842_RS23255	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS23270	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS23270	SM00843	BCG9842_RS23270
BCG9842_RS23275	SM00646	BCG9842_RS23275
BCG9842_RS23315	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS23335	SM00642	Alpha-amylase domain
BCG9842_RS23350	SM00420	helix_turn_helix, Deoxyribose operon repressor
BCG9842_RS23355	SM00363	S4 RNA-binding domain
BCG9842_RS23375	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS23400	SM01058	CarD-like/TRCF domain
BCG9842_RS23435	SM00852	Probable molybdopterin binding domain
BCG9842_RS23450	SM00729	Elongator protein 3, MiaB family, Radical SAM
BCG9842_RS23470	SM00450	Rhodanese Homology Domain
BCG9842_RS23545	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS23565	SM00729	Elongator protein 3, MiaB family, Radical SAM
BCG9842_RS23600	SM00014	Acid phosphatase homologues
BCG9842_RS23615	SM00852	Probable molybdopterin binding domain
BCG9842_RS23695	SM00387	Histidine kinase-like ATPases
BCG9842_RS23705	SM01060	BCG9842_RS23705
BCG9842_RS23745	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS23815	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS23825	SM01234	BCG9842_RS23825
BCG9842_RS23830	SM00947	Carbonic anhydrase
BCG9842_RS23905	SM00899	BCG9842_RS23905
BCG9842_RS23915	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS23915	SM00387	Histidine kinase-like ATPases
BCG9842_RS23915	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS23920	SM00448	cheY-homologous receiver domain
BCG9842_RS23920	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS23950	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BCG9842_RS24000	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS24000	SM00387	Histidine kinase-like ATPases
BCG9842_RS24000	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS24005	SM00448	cheY-homologous receiver domain
BCG9842_RS24005	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS24025	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS24030	SM00342	helix_turn_helix, arabinose operon control protein
BCG9842_RS24030	SM00871	Bacterial transcription activator, effector binding domain
BCG9842_RS24040	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS24050	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BCG9842_RS24060	SM00448	cheY-homologous receiver domain
BCG9842_RS24060	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS24065	SM00387	Histidine kinase-like ATPases
BCG9842_RS24080	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS24100	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BCG9842_RS24100	SM00866	BCG9842_RS24100
BCG9842_RS24130	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS24130	SM00387	Histidine kinase-like ATPases
BCG9842_RS24130	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS24135	SM00448	cheY-homologous receiver domain
BCG9842_RS24135	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS24140	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BCG9842_RS24180	SM00357	Cold shock protein domain
BCG9842_RS24195	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS24225	SM00642	Alpha-amylase domain
BCG9842_RS24400	SM00316	Ribosomal protein S1-like RNA-binding domain
BCG9842_RS24410	SM00344	helix_turn_helix ASNC type
BCG9842_RS24445	SM01298	BCG9842_RS24445
BCG9842_RS24450	SM00479	BCG9842_RS24450
BCG9842_RS24535	SM00871	Bacterial transcription activator, effector binding domain
BCG9842_RS24600	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS24630	SM00860	SMI1 / KNR4 family
BCG9842_RS24760	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS24775	SM00855	Phosphoglycerate mutase family
BCG9842_RS24785	SM00729	Elongator protein 3, MiaB family, Radical SAM
BCG9842_RS24830	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS24850	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS24850	SM00930	BCG9842_RS24850
BCG9842_RS24870	SM00493	BCG9842_RS24870
BCG9842_RS24915	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS24960	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS24960	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS25030	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS25050	SM00448	cheY-homologous receiver domain
BCG9842_RS25050	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS25055	SM00387	Histidine kinase-like ATPases
BCG9842_RS25055	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS25080	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS25080	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS25085	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS25085	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS25105	SM00347	helix_turn_helix multiple antibiotic resistance protein
BCG9842_RS25190	SM01276	BCG9842_RS25190
BCG9842_RS25225	SM00363	S4 RNA-binding domain
BCG9842_RS25235	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
BCG9842_RS25240	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS25275	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS25305	SM00344	helix_turn_helix ASNC type
BCG9842_RS25315	SM00344	helix_turn_helix ASNC type
BCG9842_RS25320	SM00947	Carbonic anhydrase
BCG9842_RS25325	SM01116	BCG9842_RS25325
BCG9842_RS25345	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS25365	SM00448	cheY-homologous receiver domain
BCG9842_RS25365	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS25385	SM00316	Ribosomal protein S1-like RNA-binding domain
BCG9842_RS25385	SM00357	Cold shock protein domain
BCG9842_RS25385	SM00955	BCG9842_RS25385
BCG9842_RS25415	SM01192	BCG9842_RS25415
BCG9842_RS25415	SM01193	BCG9842_RS25415
BCG9842_RS25435	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BCG9842_RS25535	SM00028	Tetratricopeptide repeats
BCG9842_RS25575	SM00487	DEAD-like helicases superfamily
BCG9842_RS25575	SM00490	helicase superfamily c-terminal domain
BCG9842_RS25590	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS25600	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS25615	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS25635	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS25645	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BCG9842_RS25645	SM00245	tail specific protease
BCG9842_RS25655	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS25665	SM00937	BCG9842_RS25665
BCG9842_RS25670	SM00957	SecA DEAD-like domain
BCG9842_RS25670	SM00958	SecA preprotein cross-linking domain
BCG9842_RS25680	SM00357	Cold shock protein domain
BCG9842_RS25690	SM00487	DEAD-like helicases superfamily
BCG9842_RS25690	SM00490	helicase superfamily c-terminal domain
BCG9842_RS25725	SM00984	UDP binding domain
BCG9842_RS25740	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS25745	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
BCG9842_RS25890	SM00287	Bacterial SH3 domain homologues
BCG9842_RS25910	SM00507	HNH nucleases
BCG9842_RS25930	SM00287	Bacterial SH3 domain homologues
BCG9842_RS25960	SM00487	DEAD-like helicases superfamily
BCG9842_RS25960	SM00490	helicase superfamily c-terminal domain
BCG9842_RS26005	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS26015	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS26040	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS26040	SM00387	Histidine kinase-like ATPases
BCG9842_RS26040	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS26045	SM00448	cheY-homologous receiver domain
BCG9842_RS26045	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS26070	SM00984	UDP binding domain
BCG9842_RS26160	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS26165	SM00850	LytTr DNA-binding domain
BCG9842_RS26245	SM00052	Putative diguanylate phosphodiesterase
BCG9842_RS26245	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BCG9842_RS26245	SM00091	PAS domain
BCG9842_RS26245	SM00267	diguanylate cyclase
BCG9842_RS26265	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS26330	SM00226	Low molecular weight phosphatase family
BCG9842_RS26345	SM00903	Flavin reductase like domain
BCG9842_RS26380	SM00937	BCG9842_RS26380
BCG9842_RS26395	SM00357	Cold shock protein domain
BCG9842_RS26395	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS26395	SM00959	Rho termination factor, N-terminal domain
BCG9842_RS26415	SM00448	cheY-homologous receiver domain
BCG9842_RS26465	SM00155	Phospholipase D. Active site motifs.
BCG9842_RS26475	SM00052	Putative diguanylate phosphodiesterase
BCG9842_RS26475	SM00267	diguanylate cyclase
BCG9842_RS26485	SM00530	Helix-turn-helix XRE-family like proteins 
BCG9842_RS26495	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS26495	SM00448	cheY-homologous receiver domain
BCG9842_RS26510	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS26550	SM00836	DALR anticodon binding domain
BCG9842_RS26550	SM01016	Arginyl tRNA synthetase N terminal dom
BCG9842_RS26590	SM00422	helix_turn_helix, mercury resistance
BCG9842_RS26620	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BCG9842_RS26630	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS26670	SM00936	Penicillin-binding protein 5, C-terminal domain 
BCG9842_RS26715	SM00986	Uracil DNA glycosylase superfamily
BCG9842_RS26715	SM00987	UreE urease accessory protein, C-terminal domain 
BCG9842_RS26725	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS26735	SM00354	helix_turn _helix lactose operon repressor
BCG9842_RS26765	SM00100	Cyclic nucleotide-monophosphate binding domain
BCG9842_RS26775	SM00421	helix_turn_helix, Lux Regulon
BCG9842_RS26775	SM00448	cheY-homologous receiver domain
BCG9842_RS26780	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BCG9842_RS26790	SM00267	diguanylate cyclase
BCG9842_RS26805	SM00448	cheY-homologous receiver domain
BCG9842_RS26805	SM00850	LytTr DNA-binding domain
BCG9842_RS26835	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BCG9842_RS26895	SM00382	ATPases associated with a variety of cellular activities
BCG9842_RS26930	SM00448	cheY-homologous receiver domain
BCG9842_RS26930	SM00850	LytTr DNA-binding domain
BCG9842_RS26935	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BCG9842_RS26935	SM00387	Histidine kinase-like ATPases
BCG9842_RS26990	SM00487	DEAD-like helicases superfamily
BCG9842_RS26990	SM00490	helicase superfamily c-terminal domain
BCG9842_RS26995	SM01240	BCG9842_RS26995
BCG9842_RS27015	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BCG9842_RS27015	SM00387	Histidine kinase-like ATPases
BCG9842_RS27015	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS27040	SM00857	Resolvase, N terminal domain
BCG9842_RS27045	SM00885	D5 N terminal like
BCG9842_RS27060	SM00507	HNH nucleases
BCG9842_RS27085	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BCG9842_RS27090	SM00849	Metallo-beta-lactamase superfamily
BCG9842_RS27105	SM00091	PAS domain
BCG9842_RS27105	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BCG9842_RS27105	SM00387	Histidine kinase-like ATPases
BCG9842_RS27105	SM00388	His Kinase A (phosphoacceptor) domain
BCG9842_RS27110	SM00448	cheY-homologous receiver domain
BCG9842_RS27110	SM00862	Transcriptional regulatory protein, C terminal
BCG9842_RS27135	SM00788	Adenylosuccinate synthetase
BCG9842_RS27150	SM00267	diguanylate cyclase
BCG9842_RS27195	SM00470	ParB-like nuclease domain
BCG9842_RS27205	SM00470	ParB-like nuclease domain
BCG9842_RS27215	SM01228	BCG9842_RS27215
BCG9842_RS27225	SM00393	Putative single-stranded nucleic acids-binding domain
BCG9842_RS27225	SM01245	BCG9842_RS27225
BCG9842_RS27540	SM00487	DEAD-like helicases superfamily
BCG9842_RS27540	SM00490	helicase superfamily c-terminal domain
BCG9842_RS28635	SM00487	DEAD-like helicases superfamily
BCG9842_RS28635	SM01058	CarD-like/TRCF domain
