locus-tag	class	description
HHK01_RS00005	PF00308	Bacterial dnaA  protein
HHK01_RS00005	PF08299	Bacterial dnaA protein helix-turn-helix
HHK01_RS00005	PF11638	DnaA N-terminal domain
HHK01_RS00010	PF00712	DNA polymerase III beta subunit, N-terminal domain
HHK01_RS00010	PF02767	DNA polymerase III beta subunit, central domain
HHK01_RS00010	PF02768	DNA polymerase III beta subunit, C-terminal domain
HHK01_RS00020	PF02463	RecF/RecN/SMC N terminal domain
HHK01_RS00030	PF00204	DNA gyrase B
HHK01_RS00030	PF00986	DNA gyrase B subunit, carboxyl terminus
HHK01_RS00030	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS00030	PF01751	Toprim domain
HHK01_RS00035	PF03989	DNA gyrase C-terminal domain, beta-propeller
HHK01_RS00035	PF00521	DNA gyrase/topoisomerase IV, subunit A
HHK01_RS00040	PF11871	Domain of unknown function (DUF3391)
HHK01_RS00040	PF01966	HD domain
HHK01_RS00070	PF14175	YaaC-like Protein
HHK01_RS00075	PF00478	IMP dehydrogenase / GMP reductase domain
HHK01_RS00075	PF00571	CBS domain
HHK01_RS00080	PF07943	Penicillin-binding protein 5, C-terminal domain
HHK01_RS00080	PF00768	D-alanyl-D-alanine carboxypeptidase
HHK01_RS00085	PF01680	SOR/SNZ family
HHK01_RS00090	PF01174	SNO glutamine amidotransferase family
HHK01_RS00095	PF02403	Seryl-tRNA synthetase N-terminal domain
HHK01_RS00095	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
HHK01_RS00115	PF01712	Deoxynucleoside kinase
HHK01_RS00120	PF01712	Deoxynucleoside kinase
HHK01_RS00130	PF00704	Glycosyl hydrolases family 18
HHK01_RS00130	PF01476	LysM domain
HHK01_RS00135	PF00857	Isochorismatase family
HHK01_RS00140	PF14437	MafB19-like deaminase
HHK01_RS00150	PF12169	DNA polymerase III subunits gamma and tau domain III
HHK01_RS00155	PF02575	YbaB/EbfC DNA-binding family
HHK01_RS00160	PF13662	Toprim domain
HHK01_RS00160	PF02132	RecR protein
HHK01_RS00170	PF07441	SigmaK-factor processing regulatory protein BofA
HHK01_RS00200	PF01323	DSBA-like thioredoxin domain
HHK01_RS00205	PF05848	CtsR N-terminal HTH domain
HHK01_RS00205	PF17727	CtsR C-terminal dimerization domain
HHK01_RS00210	PF02151	UvrB/uvrC motif
HHK01_RS00215	PF00217	ATP:guanido phosphotransferase, C-terminal catalytic domain
HHK01_RS00220	PF17871	AAA lid domain
HHK01_RS00220	PF00004	ATPase family associated with various cellular activities (AAA)
HHK01_RS00220	PF07724	AAA domain (Cdc48 subfamily)
HHK01_RS00220	PF02861	Clp amino terminal domain, pathogenicity island component
HHK01_RS00220	PF10431	C-terminal, D2-small domain, of ClpB protein 
HHK01_RS00225	PF18073	Rubredoxin metal binding domain
HHK01_RS00230	PF02457	DisA bacterial checkpoint controller nucleotide-binding
HHK01_RS00230	PF10635	DisA bacterial checkpoint controller linker region 
HHK01_RS00240	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
HHK01_RS00245	PF02542	YgbB family
HHK01_RS00250	PF00749	tRNA synthetases class I (E and Q), catalytic domain
HHK01_RS00255	PF00132	Bacterial transferase hexapeptide (six repeats)
HHK01_RS00255	PF06426	Serine acetyltransferase, N-terminal 
HHK01_RS00260	PF01406	tRNA synthetases class I (C) catalytic domain
HHK01_RS00260	PF09190	DALR domain
HHK01_RS00265	PF00636	Ribonuclease III domain
HHK01_RS00270	PF00588	SpoU rRNA Methylase family
HHK01_RS00270	PF08032	RNA 2'-O ribose methyltransferase substrate binding
HHK01_RS00275	PF05991	YacP-like NYN domain
HHK01_RS00280	PF04542	Sigma-70 region 2 
HHK01_RS00280	PF08281	Sigma-70, region 4
HHK01_RS00285	PF00471	Ribosomal protein L33
HHK01_RS00290	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
HHK01_RS00295	PF00467	KOW motif
HHK01_RS00295	PF02357	Transcription termination factor nusG
HHK01_RS00300	PF00298	Ribosomal protein L11, RNA binding domain
HHK01_RS00300	PF03946	Ribosomal protein L11, N-terminal domain
HHK01_RS00305	PF00687	Ribosomal protein L1p/L10e family
HHK01_RS00310	PF00466	Ribosomal protein L10
HHK01_RS00315	PF16320	Ribosomal protein L7/L12 dimerisation domain
HHK01_RS00315	PF00542	Ribosomal protein L7/L12 C-terminal domain
HHK01_RS00320	PF05175	Methyltransferase small domain
HHK01_RS00325	PF04560	RNA polymerase Rpb2, domain 7
HHK01_RS00325	PF00562	RNA polymerase Rpb2, domain 6
HHK01_RS00325	PF04565	RNA polymerase Rpb2, domain 3
HHK01_RS00325	PF10385	RNA polymerase beta subunit external 1 domain
HHK01_RS00325	PF04563	RNA polymerase beta subunit
HHK01_RS00325	PF04561	RNA polymerase Rpb2, domain 2
HHK01_RS00330	PF04997	RNA polymerase Rpb1, domain 1
HHK01_RS00330	PF00623	RNA polymerase Rpb1, domain 2
HHK01_RS00330	PF04983	RNA polymerase Rpb1, domain 3
HHK01_RS00330	PF05000	RNA polymerase Rpb1, domain 4
HHK01_RS00330	PF04998	RNA polymerase Rpb1, domain 5
HHK01_RS00335	PF00164	Ribosomal protein S12/S23
HHK01_RS00340	PF00177	Ribosomal protein S7p/S5e
HHK01_RS00345	PF00679	Elongation factor G C-terminus
HHK01_RS00345	PF14492	Elongation Factor G, domain II
HHK01_RS00345	PF03764	Elongation factor G, domain IV
HHK01_RS00345	PF00009	Elongation factor Tu GTP binding domain
HHK01_RS00345	PF03144	Elongation factor Tu domain 2
HHK01_RS00350	PF03143	Elongation factor Tu C-terminal domain
HHK01_RS00350	PF00009	Elongation factor Tu GTP binding domain
HHK01_RS00350	PF03144	Elongation factor Tu domain 2
HHK01_RS00355	PF07726	ATPase family associated with various cellular activities (AAA)
HHK01_RS00355	PF17863	AAA lid domain
HHK01_RS00370	PF00338	Ribosomal protein S10p/S20e
HHK01_RS00375	PF00297	Ribosomal protein L3
HHK01_RS00380	PF00573	Ribosomal protein L4/L1 family
HHK01_RS00385	PF00276	Ribosomal protein L23
HHK01_RS00390	PF00181	Ribosomal Proteins L2, RNA binding domain
HHK01_RS00390	PF03947	Ribosomal Proteins L2, C-terminal domain
HHK01_RS00395	PF00203	Ribosomal protein S19
HHK01_RS00400	PF00237	Ribosomal protein L22p/L17e
HHK01_RS00405	PF00189	Ribosomal protein S3, C-terminal domain
HHK01_RS00405	PF07650	KH domain
HHK01_RS00410	PF00252	Ribosomal protein L16p/L10e
HHK01_RS00415	PF00831	Ribosomal L29 protein
HHK01_RS00420	PF00366	Ribosomal protein S17
HHK01_RS00425	PF00238	Ribosomal protein L14p/L23e
HHK01_RS00430	PF00467	KOW motif
HHK01_RS00430	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24
HHK01_RS00435	PF00673	ribosomal L5P family C-terminus
HHK01_RS00435	PF00281	Ribosomal protein L5
HHK01_RS00440	PF00253	Ribosomal protein S14p/S29e
HHK01_RS00445	PF00410	Ribosomal protein S8
HHK01_RS00450	PF00347	Ribosomal protein L6
HHK01_RS00455	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
HHK01_RS00460	PF00333	Ribosomal protein S5, N-terminal domain
HHK01_RS00460	PF03719	Ribosomal protein S5, C-terminal domain
HHK01_RS00465	PF00327	Ribosomal protein L30p/L7e
HHK01_RS00470	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
HHK01_RS00475	PF00344	SecY translocase
HHK01_RS00480	PF05191	Adenylate kinase, active site lid
HHK01_RS00485	PF00557	Metallopeptidase family M24
HHK01_RS00495	PF01176	Translation initiation factor 1A / IF-1
HHK01_RS00500	PF00444	Ribosomal protein L36
HHK01_RS00505	PF00416	Ribosomal protein S13/S18
HHK01_RS00510	PF00411	Ribosomal protein S11
HHK01_RS00515	PF01000	RNA polymerase Rpb3/RpoA insert domain
HHK01_RS00515	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
HHK01_RS00515	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
HHK01_RS00520	PF01196	Ribosomal protein L17
HHK01_RS00525	PF00005	ABC transporter
HHK01_RS00530	PF00005	ABC transporter
HHK01_RS00535	PF02361	Cobalt transport protein
HHK01_RS00540	PF01416	tRNA pseudouridine synthase
HHK01_RS00545	PF00572	Ribosomal protein L13
HHK01_RS00550	PF00380	Ribosomal protein S9/S16
HHK01_RS00560	PF01520	N-acetylmuramoyl-L-alanine amidase
HHK01_RS00565	PF10609	NUBPL iron-transfer P-loop NTPase
HHK01_RS00570	PF17898	Spore germination GerD central core domain
HHK01_RS00575	PF14089	KinB-signalling pathway activation in sporulation
HHK01_RS00580	PF01522	Polysaccharide deacetylase
HHK01_RS00610	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
HHK01_RS00610	PF01276	Orn/Lys/Arg decarboxylase, major domain
HHK01_RS00615	PF02223	Thymidylate kinase
HHK01_RS00620	PF06153	Cyclic-di-AMP receptor
HHK01_RS00625	PF03885	Protein of unknown function (DUF327)
HHK01_RS00630	PF09115	DNA polymerase III, delta subunit, C terminal
HHK01_RS00635	PF04468	PSP1 C-terminal conserved region
HHK01_RS00640	PF06156	Initiation control protein YabA
HHK01_RS00645	PF05175	Methyltransferase small domain
HHK01_RS00650	PF01541	GIY-YIG catalytic domain
HHK01_RS00655	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
HHK01_RS00660	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin
HHK01_RS00660	PF18277	AbrB C-terminal domain
HHK01_RS00665	PF01588	Putative tRNA binding domain
HHK01_RS00665	PF09334	tRNA synthetases class I (M)
HHK01_RS00665	PF08264	Anticodon-binding domain of tRNA
HHK01_RS00670	PF01026	TatD related DNase
HHK01_RS00675	PF06725	3D domain
HHK01_RS00675	PF07501	G5 domain
HHK01_RS00675	PF03990	G5-linked-Ubiquitin-like domain
HHK01_RS00680	PF13331	Domain of unknown function (DUF4093)
HHK01_RS00680	PF13662	Toprim domain
HHK01_RS00685	PF00398	Ribosomal RNA adenine dimethylase
HHK01_RS00690	PF05582	YabG peptidase U57
HHK01_RS00695	PF06257	Biofilm formation stimulator VEG
HHK01_RS00700	PF00269	Small, acid-soluble spore proteins, alpha/beta type
HHK01_RS00705	PF00288	GHMP kinases N terminal domain
HHK01_RS00705	PF08544	GHMP kinases C terminal 
HHK01_RS00710	PF09182	Bacterial purine repressor, N-terminal
HHK01_RS00710	PF00156	Phosphoribosyl transferase domain
HHK01_RS00715	PF01042	Endoribonuclease L-PSP
HHK01_RS00720	PF04026	SpoVG
HHK01_RS00725	PF00132	Bacterial transferase hexapeptide (six repeats)
HHK01_RS00725	PF00483	Nucleotidyl transferase
HHK01_RS00730	PF14572	Phosphoribosyl synthetase-associated domain
HHK01_RS00730	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
HHK01_RS00735	PF01386	Ribosomal L25p family
HHK01_RS00735	PF14693	Ribosomal protein TL5, C-terminal domain
HHK01_RS00740	PF01195	Peptidyl-tRNA hydrolase
HHK01_RS00745	PF10955	Protein of unknown function (DUF2757)
HHK01_RS00750	PF02559	CarD-like/TRCF domain
HHK01_RS00750	PF00270	DEAD/DEAH box helicase
HHK01_RS00750	PF00271	Helicase conserved C-terminal domain
HHK01_RS00750	PF17757	UvrB interaction domain
HHK01_RS00750	PF03461	TRCF domain
HHK01_RS00755	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin
HHK01_RS00755	PF15714	Stage V sporulation protein T C-terminal, transcription factor
HHK01_RS00760	PF14667	Polysaccharide biosynthesis C-terminal domain
HHK01_RS00760	PF01943	Polysaccharide biosynthesis protein
HHK01_RS00765	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
HHK01_RS00765	PF03819	MazG nucleotide pyrophosphohydrolase domain
HHK01_RS00770	PF01479	S4 domain
HHK01_RS00775	PF07873	YabP family
HHK01_RS00780	PF09578	Spore cortex protein YabQ (Spore_YabQ)
HHK01_RS00790	PF00575	S1 RNA binding domain
HHK01_RS00805	PF07228	Stage II sporulation protein E (SpoIIE)
HHK01_RS00810	PF00092	von Willebrand factor type A domain
HHK01_RS00815	PF00069	Protein kinase domain
HHK01_RS00820	PF01171	PP-loop family
HHK01_RS00820	PF09179	TilS substrate binding domain
HHK01_RS00820	PF11734	TilS substrate C-terminal domain
HHK01_RS00825	PF00156	Phosphoribosyl transferase domain
HHK01_RS00830	PF01434	Peptidase family M41
HHK01_RS00830	PF17862	AAA+ lid domain
HHK01_RS00830	PF06480	FtsH Extracellular
HHK01_RS00830	PF00004	ATPase family associated with various cellular activities (AAA)
HHK01_RS00835	PF03309	Type III pantothenate kinase
HHK01_RS00840	PF01430	Hsp33 protein
HHK01_RS00845	PF13145	PPIC-type PPIASE domain
HHK01_RS00850	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
HHK01_RS00850	PF00367	phosphotransferase system, EIIB
HHK01_RS00850	PF02378	Phosphotransferase system, EIIC 
HHK01_RS00855	PF00291	Pyridoxal-phosphate dependent enzyme
HHK01_RS00860	PF00809	Pterin binding enzyme
HHK01_RS00865	PF02152	Dihydroneopterin aldolase
HHK01_RS00870	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
HHK01_RS00875	PF01381	Helix-turn-helix
HHK01_RS00880	PF01207	Dihydrouridine synthase (Dus)
HHK01_RS00885	PF00152	tRNA synthetases class II (D, K and N) 
HHK01_RS00885	PF01336	OB-fold nucleic acid binding domain
HHK01_RS00995	PF00491	Arginase family
HHK01_RS01000	PF08281	Sigma-70, region 4
HHK01_RS01000	PF04542	Sigma-70 region 2 
HHK01_RS01015	PF07949	YbbR-like protein
HHK01_RS01020	PF07949	YbbR-like protein
HHK01_RS01035	PF02583	Metal-sensitive transcriptional repressor
HHK01_RS01050	PF01554	MatE
HHK01_RS01055	PF01380	SIS domain
HHK01_RS01060	PF08721	TnsA endonuclease C terminal
HHK01_RS01060	PF08722	TnsA endonuclease N terminal
HHK01_RS01070	PF01695	IstB-like ATP binding protein
HHK01_RS01075	PF00665	Integrase core domain
HHK01_RS01080	PF11426	Tn7 transposition regulator TnsC
HHK01_RS01080	PF13401	AAA domain
HHK01_RS01085	PF15978	Tn7-like transposition protein D
HHK01_RS01085	PF06527	TniQ
HHK01_RS01105	PF01923	Cobalamin adenosyltransferase
HHK01_RS01110	PF00491	Arginase family
HHK01_RS01130	PF04055	Radical SAM superfamily
HHK01_RS01130	PF06969	HemN C-terminal domain
HHK01_RS01135	PF00300	Histidine phosphatase superfamily (branch 1)
HHK01_RS01140	PF07690	Major Facilitator Superfamily
HHK01_RS01145	PF01820	D-ala D-ala ligase N-terminus
HHK01_RS01145	PF07478	D-ala D-ala ligase C-terminus
HHK01_RS01150	PF13419	Haloacid dehalogenase-like hydrolase
HHK01_RS01165	PF04986	Putative transposase
HHK01_RS01165	PF14319	Transposase zinc-binding domain
HHK01_RS01180	PF01638	HxlR-like helix-turn-helix
HHK01_RS01185	PF07681	DoxX
HHK01_RS01190	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
HHK01_RS01200	PF03358	NADPH-dependent FMN reductase
HHK01_RS01215	PF13407	Periplasmic binding protein domain
HHK01_RS01220	PF00005	ABC transporter
HHK01_RS01225	PF02653	Branched-chain amino acid transport system / permease component
HHK01_RS01235	PF02743	Cache domain
HHK01_RS01235	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS01235	PF06580	Histidine kinase
HHK01_RS01235	PF00672	HAMP domain
HHK01_RS01240	PF00072	Response regulator receiver domain
HHK01_RS01240	PF00196	Bacterial regulatory proteins, luxR family
HHK01_RS01245	PF13407	Periplasmic binding protein domain
HHK01_RS01255	PF05816	Toxic anion resistance protein (TelA)
HHK01_RS01260	PF10112	5-bromo-4-chloroindolyl phosphate hydrolysis protein
HHK01_RS01275	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
HHK01_RS01275	PF05043	Mga helix-turn-helix domain
HHK01_RS01275	PF08279	HTH domain
HHK01_RS01275	PF00874	PRD domain
HHK01_RS01280	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
HHK01_RS01280	PF02378	Phosphotransferase system, EIIC 
HHK01_RS01280	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
HHK01_RS01285	PF01238	Phosphomannose isomerase type I
HHK01_RS01295	PF17340	Family of unknown function (DUF5370)
HHK01_RS01310	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
HHK01_RS01310	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
HHK01_RS01315	PF07690	Major Facilitator Superfamily
HHK01_RS01320	PF00005	ABC transporter
HHK01_RS01320	PF12848	ABC transporter
HHK01_RS01370	PF02696	Uncharacterized ACR, YdiU/UPF0061 family
HHK01_RS01375	PF01925	Sulfite exporter TauE/SafE
HHK01_RS01390	PF00072	Response regulator receiver domain
HHK01_RS01390	PF00486	Transcriptional regulatory protein, C terminal
HHK01_RS01395	PF00672	HAMP domain
HHK01_RS01395	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS01395	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS01405	PF00176	SNF2 family N-terminal domain
HHK01_RS01405	PF00271	Helicase conserved C-terminal domain
HHK01_RS01415	PF01063	Amino-transferase class IV
HHK01_RS01420	PF00920	Dehydratase family
HHK01_RS01425	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
HHK01_RS01425	PF00205	Thiamine pyrophosphate enzyme, central domain
HHK01_RS01425	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
HHK01_RS01430	PF01842	ACT domain
HHK01_RS01430	PF10369	Small subunit of acetolactate synthase
HHK01_RS01435	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
HHK01_RS01435	PF07991	Acetohydroxy acid isomeroreductase, NADPH-binding domain
HHK01_RS01440	PF08502	LeuA allosteric (dimerisation) domain
HHK01_RS01440	PF00682	HMGL-like
HHK01_RS01445	PF00180	Isocitrate/isopropylmalate dehydrogenase
HHK01_RS01450	PF00330	Aconitase family (aconitate hydratase)
HHK01_RS01455	PF00694	Aconitase C-terminal domain
HHK01_RS01460	PF00291	Pyridoxal-phosphate dependent enzyme
HHK01_RS01470	PF00326	Prolyl oligopeptidase family
HHK01_RS01475	PF07690	Major Facilitator Superfamily
HHK01_RS01500	PF04303	PrpF protein
HHK01_RS01505	PF03466	LysR substrate binding domain
HHK01_RS01505	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
HHK01_RS01510	PF14537	Cytochrome c3
HHK01_RS01510	PF00890	FAD binding domain
HHK01_RS01515	PF00478	IMP dehydrogenase / GMP reductase domain
HHK01_RS01530	PF01546	Peptidase family M20/M25/M40
HHK01_RS01535	PF03806	AbgT putative transporter family
HHK01_RS01545	PF01131	DNA topoisomerase
HHK01_RS01545	PF01751	Toprim domain
HHK01_RS01555	PF01081	KDPG and KHG aldolase
HHK01_RS01560	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
HHK01_RS01560	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
HHK01_RS01570	PF00107	Zinc-binding dehydrogenase
HHK01_RS01570	PF08240	Alcohol dehydrogenase GroES-like domain
HHK01_RS01575	PF02374	Anion-transporting ATPase
HHK01_RS01585	PF02554	Carbon starvation protein CstA
HHK01_RS01585	PF13722	5TM C-terminal transporter carbon starvation CstA
HHK01_RS01590	PF13249	Squalene-hopene cyclase N-terminal domain
HHK01_RS01590	PF13243	Squalene-hopene cyclase C-terminal domain
HHK01_RS01600	PF01709	Transcriptional regulator
HHK01_RS01605	PF08141	Small acid-soluble spore protein H family
HHK01_RS01625	PF14748	Pyrroline-5-carboxylate reductase dimerisation
HHK01_RS01625	PF03807	NADP oxidoreductase coenzyme F420-dependent
HHK01_RS01630	PF01472	PUA domain
HHK01_RS01630	PF00696	Amino acid kinase family
HHK01_RS01635	PF00171	Aldehyde dehydrogenase family
HHK01_RS01640	PF00067	Cytochrome P450
HHK01_RS01645	PF13426	PAS domain
HHK01_RS01645	PF02954	Bacterial regulatory protein, Fis family
HHK01_RS01645	PF00158	Sigma-54 interaction domain
HHK01_RS01650	PF03812	2-keto-3-deoxygluconate permease
HHK01_RS01655	PF07005	Sugar-binding N-terminal domain
HHK01_RS01655	PF17042	Nucleotide-binding C-terminal domain
HHK01_RS01660	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
HHK01_RS01675	PF00209	Sodium:neurotransmitter symporter family
HHK01_RS01680	PF17785	PUA-like domain
HHK01_RS01680	PF10672	S-adenosylmethionine-dependent methyltransferase
HHK01_RS01690	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS01690	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS01690	PF00989	PAS fold
HHK01_RS01690	PF08447	PAS fold
HHK01_RS01695	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
HHK01_RS01700	PF03880	DbpA RNA binding domain   
HHK01_RS01700	PF00271	Helicase conserved C-terminal domain
HHK01_RS01700	PF00270	DEAD/DEAH box helicase
HHK01_RS01705	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
HHK01_RS01710	PF00664	ABC transporter transmembrane region
HHK01_RS01710	PF00005	ABC transporter
HHK01_RS01715	PF00664	ABC transporter transmembrane region
HHK01_RS01715	PF00005	ABC transporter
HHK01_RS01725	PF02463	RecF/RecN/SMC N terminal domain
HHK01_RS01745	PF05067	Manganese containing catalase
HHK01_RS01750	PF12652	CotJB protein
HHK01_RS01755	PF11007	Spore coat associated protein JA (CotJA)
HHK01_RS01765	PF03323	Bacillus/Clostridium GerA spore germination protein
HHK01_RS01785	PF01734	Patatin-like phospholipase
HHK01_RS01800	PF00326	Prolyl oligopeptidase family
HHK01_RS01805	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
HHK01_RS01805	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
HHK01_RS01810	PF03167	Uracil DNA glycosylase superfamily
HHK01_RS01815	PF10778	Halocarboxylic acid dehydrogenase DehI
HHK01_RS01820	PF03626	Prokaryotic Cytochrome C oxidase subunit IV 
HHK01_RS01825	PF00510	Cytochrome c oxidase subunit III
HHK01_RS01830	PF00115	Cytochrome C and Quinol oxidase polypeptide I
HHK01_RS01835	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
HHK01_RS01850	PF00571	CBS domain
HHK01_RS01855	PF00768	D-alanyl-D-alanine carboxypeptidase
HHK01_RS01855	PF07943	Penicillin-binding protein 5, C-terminal domain
HHK01_RS01860	PF01636	Phosphotransferase enzyme family
HHK01_RS01865	PF00581	Rhodanese-like domain
HHK01_RS01865	PF17773	UPF0176 acylphosphatase like domain
HHK01_RS01865	PF12368	Rhodanase C-terminal
HHK01_RS01870	PF01979	Amidohydrolase family
HHK01_RS01875	PF00664	ABC transporter transmembrane region
HHK01_RS01875	PF00005	ABC transporter
HHK01_RS01885	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS01885	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS01885	PF09308	LuxQ, periplasmic
HHK01_RS01885	PF00072	Response regulator receiver domain
HHK01_RS01890	PF00072	Response regulator receiver domain
HHK01_RS01890	PF00486	Transcriptional regulatory protein, C terminal
HHK01_RS01895	PF08671	Anti-repressor SinI
HHK01_RS01910	PF01970	Tripartite tricarboxylate transporter TctA family
HHK01_RS01920	PF03401	Tripartite tricarboxylate transporter family receptor
HHK01_RS01925	PF12431	Transcriptional regulator 
HHK01_RS01925	PF08279	HTH domain
HHK01_RS01925	PF00072	Response regulator receiver domain
HHK01_RS01930	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
HHK01_RS01930	PF00989	PAS fold
HHK01_RS01930	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS01930	PF17203	Single cache domain 3
HHK01_RS01935	PF09278	MerR, DNA binding
HHK01_RS01935	PF00376	MerR family regulatory protein
HHK01_RS01940	PF13193	AMP-binding enzyme C-terminal domain
HHK01_RS01940	PF00501	AMP-binding enzyme
HHK01_RS01945	PF02770	Acyl-CoA dehydrogenase, middle domain
HHK01_RS01945	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
HHK01_RS01945	PF18158	Adaptive response protein AidB N-terminal domain
HHK01_RS01950	PF00005	ABC transporter
HHK01_RS01950	PF09383	NIL domain
HHK01_RS01955	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS01960	PF03180	NLPA lipoprotein
HHK01_RS01970	PF00296	Luciferase-like monooxygenase
HHK01_RS01975	PF03358	NADPH-dependent FMN reductase
HHK01_RS01980	PF01638	HxlR-like helix-turn-helix
HHK01_RS01985	PF07681	DoxX
HHK01_RS01990	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
HHK01_RS01995	PF08241	Methyltransferase domain
HHK01_RS02000	PF01209	ubiE/COQ5 methyltransferase family
HHK01_RS02005	PF01625	Peptide methionine sulfoxide reductase
HHK01_RS02020	PF09962	Uncharacterized conserved protein (DUF2196)
HHK01_RS02030	PF01053	Cys/Met metabolism PLP-dependent enzyme
HHK01_RS02035	PF00392	Bacterial regulatory proteins, gntR family
HHK01_RS02035	PF07702	UTRA domain
HHK01_RS02055	PF01810	LysE type translocator
HHK01_RS02060	PF00324	Amino acid permease
HHK01_RS02065	PF00326	Prolyl oligopeptidase family
HHK01_RS02070	PF01168	Alanine racemase, N-terminal domain
HHK01_RS02070	PF00842	Alanine racemase, C-terminal domain
HHK01_RS02075	PF01497	Periplasmic binding protein
HHK01_RS02080	PF01225	Mur ligase family, catalytic domain
HHK01_RS02080	PF02875	Mur ligase family, glutamate ligase domain
HHK01_RS02080	PF08245	Mur ligase middle domain
HHK01_RS02085	PF00326	Prolyl oligopeptidase family
HHK01_RS02085	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
HHK01_RS02095	PF00561	alpha/beta hydrolase fold
HHK01_RS02100	PF01212	Beta-eliminating lyase
HHK01_RS02105	PF04239	Protein of unknown function (DUF421)
HHK01_RS02115	PF00394	Multicopper oxidase
HHK01_RS02115	PF07731	Multicopper oxidase
HHK01_RS02115	PF07732	Multicopper oxidase
HHK01_RS02120	PF01751	Toprim domain
HHK01_RS02120	PF01131	DNA topoisomerase
HHK01_RS02125	PF13509	S1 domain
HHK01_RS02125	PF17783	CvfB-like winged helix domain
HHK01_RS02130	PF07690	Major Facilitator Superfamily
HHK01_RS02140	PF07690	Major Facilitator Superfamily
HHK01_RS02145	PF09021	HutP
HHK01_RS02150	PF00221	Aromatic amino acid lyase
HHK01_RS02155	PF01175	Urocanase Rossmann-like domain
HHK01_RS02155	PF17392	Urocanase C-terminal domain
HHK01_RS02155	PF17391	Urocanase N-terminal domain
HHK01_RS02160	PF07969	Amidohydrolase family
HHK01_RS02165	PF00491	Arginase family
HHK01_RS02170	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
HHK01_RS02170	PF02779	Transketolase, pyrimidine binding domain
HHK01_RS02170	PF02780	Transketolase, C-terminal domain
HHK01_RS02180	PF00005	ABC transporter
HHK01_RS02180	PF12848	ABC transporter
HHK01_RS02185	PF03323	Bacillus/Clostridium GerA spore germination protein
HHK01_RS02200	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
HHK01_RS02205	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
HHK01_RS02205	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
HHK01_RS02220	PF00313	'Cold-shock' DNA-binding domain
HHK01_RS02230	PF00892	EamA-like transporter family
HHK01_RS02235	PF08240	Alcohol dehydrogenase GroES-like domain
HHK01_RS02235	PF13823	Alcohol dehydrogenase GroES-associated
HHK01_RS02235	PF00107	Zinc-binding dehydrogenase
HHK01_RS02250	PF01145	SPFH domain / Band 7 family
HHK01_RS02250	PF15975	Flotillin
HHK01_RS02260	PF00881	Nitroreductase family
HHK01_RS02270	PF00571	CBS domain
HHK01_RS02270	PF03471	Transporter associated domain
HHK01_RS02270	PF01595	Cyclin M transmembrane N-terminal domain
HHK01_RS02280	PF01425	Amidase
HHK01_RS02300	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS02300	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS02300	PF00989	PAS fold
HHK01_RS02300	PF08447	PAS fold
HHK01_RS02310	PF04607	Region found in RelA / SpoT proteins
HHK01_RS02320	PF04715	Anthranilate synthase component I, N terminal region
HHK01_RS02320	PF00425	chorismate binding enzyme
HHK01_RS02335	PF02386	Cation transport protein
HHK01_RS02340	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS02340	PF00005	ABC transporter
HHK01_RS02345	PF00005	ABC transporter
HHK01_RS02345	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS02350	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
HHK01_RS02355	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS02360	PF12911	N-terminal TM domain of oligopeptide transport permease C
HHK01_RS02360	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS02365	PF02378	Phosphotransferase system, EIIC 
HHK01_RS02365	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
HHK01_RS02370	PF08279	HTH domain
HHK01_RS02370	PF05043	Mga helix-turn-helix domain
HHK01_RS02370	PF00874	PRD domain
HHK01_RS02370	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
HHK01_RS02370	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
HHK01_RS02375	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
HHK01_RS02380	PF08125	Mannitol dehydrogenase C-terminal domain
HHK01_RS02380	PF01232	Mannitol dehydrogenase Rossmann domain
HHK01_RS02385	PF00355	Rieske [2Fe-2S] domain
HHK01_RS02385	PF01266	FAD dependent oxidoreductase
HHK01_RS02400	PF13291	ACT domain
HHK01_RS02400	PF04607	Region found in RelA / SpoT proteins
HHK01_RS02400	PF02824	TGS domain
HHK01_RS02410	PF00005	ABC transporter
HHK01_RS02420	PF04542	Sigma-70 region 2 
HHK01_RS02420	PF08281	Sigma-70, region 4
HHK01_RS02430	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS02435	PF00571	CBS domain
HHK01_RS02435	PF00005	ABC transporter
HHK01_RS02440	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
HHK01_RS02445	PF16657	Maltogenic Amylase, C-terminal domain
HHK01_RS02445	PF00128	Alpha amylase, catalytic domain
HHK01_RS02450	PF01699	Sodium/calcium exchanger protein
HHK01_RS02455	PF03006	Haemolysin-III related
HHK01_RS02460	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
HHK01_RS02485	PF03553	Na+/H+ antiporter family
HHK01_RS02490	PF00403	Heavy-metal-associated domain
HHK01_RS02500	PF01925	Sulfite exporter TauE/SafE
HHK01_RS02505	PF00005	ABC transporter
HHK01_RS02515	PF01098	Cell cycle protein
HHK01_RS02520	PF00571	CBS domain
HHK01_RS02520	PF03471	Transporter associated domain
HHK01_RS02520	PF01595	Cyclin M transmembrane N-terminal domain
HHK01_RS02525	PF00571	CBS domain
HHK01_RS02525	PF03471	Transporter associated domain
HHK01_RS02525	PF01595	Cyclin M transmembrane N-terminal domain
HHK01_RS02540	PF07478	D-ala D-ala ligase C-terminus
HHK01_RS02540	PF01820	D-ala D-ala ligase N-terminus
HHK01_RS02545	PF01225	Mur ligase family, catalytic domain
HHK01_RS02545	PF02875	Mur ligase family, glutamate ligase domain
HHK01_RS02545	PF08245	Mur ligase middle domain
HHK01_RS02555	PF00270	DEAD/DEAH box helicase
HHK01_RS02555	PF00271	Helicase conserved C-terminal domain
HHK01_RS02560	PF03703	Bacterial PH domain
HHK01_RS02565	PF03703	Bacterial PH domain
HHK01_RS02570	PF01694	Rhomboid family
HHK01_RS02575	PF01648	4'-phosphopantetheinyl transferase superfamily
HHK01_RS02585	PF00842	Alanine racemase, C-terminal domain
HHK01_RS02585	PF01168	Alanine racemase, N-terminal domain
HHK01_RS02590	PF01402	Ribbon-helix-helix protein, copG family
HHK01_RS02595	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system
HHK01_RS02600	PF13581	Histidine kinase-like ATPase domain
HHK01_RS02605	PF07228	Stage II sporulation protein E (SpoIIE)
HHK01_RS02605	PF08673	Phosphoserine phosphatase RsbU, N-terminal domain
HHK01_RS02610	PF01740	STAS domain
HHK01_RS02615	PF13581	Histidine kinase-like ATPase domain
HHK01_RS02620	PF04542	Sigma-70 region 2 
HHK01_RS02620	PF04539	Sigma-70 region 3
HHK01_RS02620	PF04545	Sigma-70, region 4
HHK01_RS02625	PF17674	HHH domain
HHK01_RS02625	PF00575	S1 RNA binding domain
HHK01_RS02625	PF09371	Tex-like protein N-terminal domain
HHK01_RS02625	PF16921	Tex protein YqgF-like domain
HHK01_RS02635	PF10263	SprT-like family
HHK01_RS02720	PF02367	Threonylcarbamoyl adenosine biosynthesis protein TsaE
HHK01_RS02725	PF00814	Glycoprotease family
HHK01_RS02730	PF00583	Acetyltransferase (GNAT) family
HHK01_RS02735	PF00814	Glycoprotease family
HHK01_RS02740	PF16326	ABC transporter C-terminal domain
HHK01_RS02740	PF00005	ABC transporter
HHK01_RS02740	PF12848	ABC transporter
HHK01_RS02745	PF02629	CoA binding domain
HHK01_RS02745	PF06971	Putative DNA-binding protein N-terminus
HHK01_RS02750	PF02416	mttA/Hcf106 family
HHK01_RS02755	PF00902	Sec-independent protein translocase protein (TatC)
HHK01_RS02765	PF02517	CPBP intramembrane metalloprotease
HHK01_RS02770	PF00166	Chaperonin 10 Kd subunit
HHK01_RS02775	PF00118	TCP-1/cpn60 chaperonin family
HHK01_RS02785	PF07726	ATPase family associated with various cellular activities (AAA)
HHK01_RS02785	PF17863	AAA lid domain
HHK01_RS02790	PF01882	Protein of unknown function DUF58
HHK01_RS02795	PF01841	Transglutaminase-like superfamily
HHK01_RS02795	PF13559	Domain of unknown function (DUF4129)
HHK01_RS02795	PF11992	Domain of unknown function (DUF3488)
HHK01_RS02800	PF02540	NAD synthase
HHK01_RS02800	PF00117	Glutamine amidotransferase class-I
HHK01_RS02800	PF00958	GMP synthase C terminal domain
HHK01_RS02805	PF00860	Permease family
HHK01_RS02825	PF04545	Sigma-70, region 4
HHK01_RS02825	PF04542	Sigma-70 region 2 
HHK01_RS02835	PF00403	Heavy-metal-associated domain
HHK01_RS02850	PF00484	Carbonic anhydrase
HHK01_RS02855	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
HHK01_RS02865	PF00731	AIR carboxylase
HHK01_RS02870	PF02222	ATP-grasp domain
HHK01_RS02870	PF17769	Phosphoribosylaminoimidazole carboxylase C-terminal domain
HHK01_RS02875	PF10397	Adenylosuccinate lyase C-terminus
HHK01_RS02875	PF00206	Lyase
HHK01_RS02880	PF01259	SAICAR synthetase
HHK01_RS02895	PF18072	Formylglycinamide ribonucleotide amidotransferase linker domain
HHK01_RS02895	PF00586	AIR synthase related protein, N-terminal domain
HHK01_RS02895	PF02769	AIR synthase related protein, C-terminal domain
HHK01_RS02900	PF00156	Phosphoribosyl transferase domain
HHK01_RS02905	PF00586	AIR synthase related protein, N-terminal domain
HHK01_RS02905	PF02769	AIR synthase related protein, C-terminal domain
HHK01_RS02910	PF00551	Formyl transferase
HHK01_RS02915	PF01808	AICARFT/IMPCHase bienzyme
HHK01_RS02915	PF02142	MGS-like domain
HHK01_RS02920	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
HHK01_RS02920	PF02843	Phosphoribosylglycinamide synthetase, C domain
HHK01_RS02920	PF02844	Phosphoribosylglycinamide synthetase, N domain
HHK01_RS02930	PF01979	Amidohydrolase family
HHK01_RS02930	PF13382	Adenine deaminase C-terminal domain
HHK01_RS02935	PF11258	Protein of unknown function (DUF3048) N-terminal domain
HHK01_RS02935	PF17479	Protein of unknown function (DUF3048) C-terminal domain
HHK01_RS02940	PF01371	Trp repressor protein
HHK01_RS02955	PF01884	PcrB family
HHK01_RS02960	PF00580	UvrD/REP helicase N-terminal domain
HHK01_RS02960	PF13361	UvrD-like helicase C-terminal domain
HHK01_RS02965	PF00533	BRCA1 C Terminus (BRCT) domain
HHK01_RS02965	PF01653	NAD-dependent DNA ligase adenylation domain
HHK01_RS02965	PF03120	NAD-dependent DNA ligase OB-fold domain
HHK01_RS02965	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
HHK01_RS02965	PF12826	Helix-hairpin-helix motif
HHK01_RS02970	PF07537	CamS sex pheromone cAM373 precursor
HHK01_RS02975	PF00171	Aldehyde dehydrogenase family
HHK01_RS02980	PF00375	Sodium:dicarboxylate symporter family
HHK01_RS02985	PF00248	Aldo/keto reductase family
HHK01_RS02995	PF00474	Sodium:solute symporter family
HHK01_RS03000	PF00188	Cysteine-rich secretory protein family
HHK01_RS03005	PF02686	Glu-tRNAGln amidotransferase C subunit
HHK01_RS03010	PF01425	Amidase
HHK01_RS03015	PF02934	GatB/GatE catalytic domain
HHK01_RS03015	PF02637	GatB domain
HHK01_RS03035	PF00781	Diacylglycerol kinase catalytic domain
HHK01_RS03045	PF13344	Haloacid dehalogenase-like hydrolase
HHK01_RS03045	PF00293	NUDIX domain
HHK01_RS03050	PF01370	NAD dependent epimerase/dehydratase family
HHK01_RS03050	PF08338	Domain of unknown function (DUF1731)
HHK01_RS03055	PF14158	YndJ-like protein
HHK01_RS03070	PF05958	tRNA (Uracil-5-)-methyltransferase
HHK01_RS03070	PF01938	TRAM domain
HHK01_RS03090	PF03551	Transcriptional regulator PadR-like family
HHK01_RS03090	PF13847	Methyltransferase domain
HHK01_RS03110	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
HHK01_RS03110	PF00925	GTP cyclohydrolase II
HHK01_RS03115	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
HHK01_RS03115	PF01872	RibD C-terminal domain
HHK01_RS03120	PF14319	Transposase zinc-binding domain
HHK01_RS03120	PF04986	Putative transposase
HHK01_RS03125	PF07687	Peptidase dimerisation domain
HHK01_RS03125	PF01546	Peptidase family M20/M25/M40
HHK01_RS03140	PF01638	HxlR-like helix-turn-helix
HHK01_RS03150	PF03358	NADPH-dependent FMN reductase
HHK01_RS03155	PF03358	NADPH-dependent FMN reductase
HHK01_RS03160	PF07883	Cupin domain
HHK01_RS03160	PF12833	Helix-turn-helix domain
HHK01_RS03165	PF01497	Periplasmic binding protein
HHK01_RS03170	PF01032	FecCD transport family
HHK01_RS03175	PF01032	FecCD transport family
HHK01_RS03185	PF07687	Peptidase dimerisation domain
HHK01_RS03185	PF01546	Peptidase family M20/M25/M40
HHK01_RS03220	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
HHK01_RS03220	PF03466	LysR substrate binding domain
HHK01_RS03230	PF00375	Sodium:dicarboxylate symporter family
HHK01_RS03240	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
HHK01_RS03245	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS03250	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS03250	PF12911	N-terminal TM domain of oligopeptide transport permease C
HHK01_RS03255	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS03255	PF00005	ABC transporter
HHK01_RS03260	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS03260	PF00005	ABC transporter
HHK01_RS03270	PF00664	ABC transporter transmembrane region
HHK01_RS03270	PF00005	ABC transporter
HHK01_RS03275	PF00664	ABC transporter transmembrane region
HHK01_RS03275	PF00005	ABC transporter
HHK01_RS03285	PF00005	ABC transporter
HHK01_RS03290	PF00392	Bacterial regulatory proteins, gntR family
HHK01_RS03295	PF00557	Metallopeptidase family M24
HHK01_RS03305	PF00082	Subtilase family
HHK01_RS03310	PF18801	response regulator aspartate phosphatase H, N terminal
HHK01_RS03315	PF13419	Haloacid dehalogenase-like hydrolase
HHK01_RS03320	PF00486	Transcriptional regulatory protein, C terminal
HHK01_RS03320	PF00072	Response regulator receiver domain
HHK01_RS03325	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS03325	PF00672	HAMP domain
HHK01_RS03325	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS03330	PF00005	ABC transporter
HHK01_RS03335	PF02687	FtsX-like permease family
HHK01_RS03335	PF12704	MacB-like periplasmic core domain
HHK01_RS03355	PF01327	Polypeptide deformylase
HHK01_RS03370	PF02028	BCCT, betaine/carnitine/choline family transporter
HHK01_RS03375	PF01156	Inosine-uridine preferring nucleoside hydrolase
HHK01_RS03380	PF13302	Acetyltransferase (GNAT) domain
HHK01_RS03385	PF01546	Peptidase family M20/M25/M40
HHK01_RS03385	PF07687	Peptidase dimerisation domain
HHK01_RS03395	PF13580	SIS domain
HHK01_RS03400	PF01380	SIS domain
HHK01_RS03400	PF01418	Helix-turn-helix domain, rpiR family
HHK01_RS03415	PF02378	Phosphotransferase system, EIIC 
HHK01_RS03425	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
HHK01_RS03435	PF03702	Anhydro-N-acetylmuramic acid kinase
HHK01_RS03440	PF01869	BadF/BadG/BcrA/BcrD ATPase family
HHK01_RS03475	PF07687	Peptidase dimerisation domain
HHK01_RS03475	PF01546	Peptidase family M20/M25/M40
HHK01_RS03480	PF04101	Glycosyltransferase family 28 C-terminal domain
HHK01_RS03480	PF03033	Glycosyltransferase family 28 N-terminal domain
HHK01_RS03485	PF04309	Glycerol-3-phosphate responsive antiterminator
HHK01_RS03490	PF00230	Major intrinsic protein
HHK01_RS03495	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
HHK01_RS03495	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
HHK01_RS03500	PF01266	FAD dependent oxidoreductase
HHK01_RS03500	PF16901	C-terminal domain of alpha-glycerophosphate oxidase
HHK01_RS03515	PF08003	Protein of unknown function (DUF1698)
HHK01_RS03520	PF02073	Thermophilic metalloprotease (M29)
HHK01_RS03525	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
HHK01_RS03525	PF02770	Acyl-CoA dehydrogenase, middle domain
HHK01_RS03525	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
HHK01_RS03530	PF00583	Acetyltransferase (GNAT) family
HHK01_RS03530	PF13380	CoA binding domain
HHK01_RS03530	PF13607	Succinyl-CoA ligase like flavodoxin domain
HHK01_RS03540	PF00939	Sodium:sulfate symporter transmembrane region
HHK01_RS03545	PF09350	Domain of unknown function (DUF1992)
HHK01_RS03550	PF07690	Major Facilitator Superfamily
HHK01_RS03565	PF00535	Glycosyl transferase family 2
HHK01_RS03580	PF02350	UDP-N-acetylglucosamine 2-epimerase
HHK01_RS03585	PF02719	Polysaccharide biosynthesis protein
HHK01_RS03595	PF16363	GDP-mannose 4,6 dehydratase
HHK01_RS03600	PF00535	Glycosyl transferase family 2
HHK01_RS03605	PF07687	Peptidase dimerisation domain
HHK01_RS03605	PF01546	Peptidase family M20/M25/M40
HHK01_RS03610	PF01546	Peptidase family M20/M25/M40
HHK01_RS03610	PF07687	Peptidase dimerisation domain
HHK01_RS03620	PF06569	Protein of unknown function (DUF1128)
HHK01_RS03625	PF00239	Resolvase, N terminal domain
HHK01_RS03625	PF13408	Recombinase zinc beta ribbon domain
HHK01_RS03625	PF07508	Recombinase
HHK01_RS03675	PF03631	Virulence factor BrkB
HHK01_RS03680	PF07690	Major Facilitator Superfamily
HHK01_RS03690	PF14167	YfkD-like protein
HHK01_RS03700	PF05681	Fumarate hydratase (Fumerase)
HHK01_RS03700	PF05683	Fumarase C-terminus
HHK01_RS03705	PF17368	Spore morphogenesis and germination YwcE
HHK01_RS03710	PF01432	Peptidase family M3
HHK01_RS03710	PF08439	Oligopeptidase F
HHK01_RS03725	PF01522	Polysaccharide deacetylase
HHK01_RS03730	PF00730	HhH-GPD superfamily base excision DNA repair protein
HHK01_RS03735	PF01938	TRAM domain
HHK01_RS03735	PF05958	tRNA (Uracil-5-)-methyltransferase
HHK01_RS03765	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
HHK01_RS03775	PF13847	Methyltransferase domain
HHK01_RS03780	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS03790	PF07690	Major Facilitator Superfamily
HHK01_RS03795	PF03069	Acetamidase/Formamidase family
HHK01_RS03800	PF01022	Bacterial regulatory protein, arsR family
HHK01_RS03805	PF01790	Prolipoprotein diacylglyceryl transferase
HHK01_RS03810	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
HHK01_RS03810	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS03810	PF00403	Heavy-metal-associated domain
HHK01_RS03820	PF00403	Heavy-metal-associated domain
HHK01_RS03825	PF13411	MerR HTH family regulatory protein
HHK01_RS03835	PF00296	Luciferase-like monooxygenase
HHK01_RS03840	PF00082	Subtilase family
HHK01_RS03850	PF13492	GAF domain
HHK01_RS03850	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS03850	PF07730	Histidine kinase
HHK01_RS03855	PF00072	Response regulator receiver domain
HHK01_RS03855	PF00196	Bacterial regulatory proteins, luxR family
HHK01_RS03870	PF14151	YfhD-like protein
HHK01_RS03880	PF08338	Domain of unknown function (DUF1731)
HHK01_RS03880	PF01370	NAD dependent epimerase/dehydratase family
HHK01_RS03885	PF02631	RecX family
HHK01_RS03890	PF08838	Protein of unknown function (DUF1811)
HHK01_RS03900	PF08176	Small acid-soluble spore protein K family
HHK01_RS03905	PF04307	LexA-binding, inner membrane-associated putative hydrolase
HHK01_RS03910	PF14815	NUDIX domain
HHK01_RS03910	PF00730	HhH-GPD superfamily base excision DNA repair protein
HHK01_RS03935	PF04167	Protein of unknown function (DUF402)
HHK01_RS03940	PF00664	ABC transporter transmembrane region
HHK01_RS03940	PF00005	ABC transporter
HHK01_RS03955	PF06081	Aromatic acid exporter family member 1
HHK01_RS03960	PF00310	Glutamine amidotransferases class-II
HHK01_RS03960	PF04898	Glutamate synthase central domain
HHK01_RS03960	PF01645	Conserved region in glutamate synthase
HHK01_RS03960	PF01493	GXGXG motif
HHK01_RS03965	PF00682	HMGL-like
HHK01_RS03970	PF07729	FCD domain
HHK01_RS03970	PF00392	Bacterial regulatory proteins, gntR family
HHK01_RS03975	PF02515	CoA-transferase family III
HHK01_RS03980	PF00330	Aconitase family (aconitate hydratase)
HHK01_RS03985	PF00694	Aconitase C-terminal domain
HHK01_RS03995	PF00474	Sodium:solute symporter family
HHK01_RS04005	PF01613	Flavin reductase like domain
HHK01_RS04010	PF00202	Aminotransferase class-III
HHK01_RS04015	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
HHK01_RS04015	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
HHK01_RS04015	PF11890	Domain of unknown function (DUF3410)
HHK01_RS04020	PF01923	Cobalamin adenosyltransferase
HHK01_RS04025	PF01475	Ferric uptake regulator family
HHK01_RS04035	PF11023	Zinc-ribbon containing domain
HHK01_RS04040	PF14540	Nucleotidyltransferase-like
HHK01_RS04040	PF18576	Helix-turn-helix domain
HHK01_RS04145	PF12389	Camelysin metallo-endopeptidase
HHK01_RS04150	PF12389	Camelysin metallo-endopeptidase
HHK01_RS04160	PF01381	Helix-turn-helix
HHK01_RS04160	PF08671	Anti-repressor SinI
HHK01_RS04170	PF06628	Catalase-related immune-responsive
HHK01_RS04170	PF00199	Catalase
HHK01_RS04170	PF18011	C-terminal domain found in long catalases
HHK01_RS04180	PF03060	Nitronate monooxygenase
HHK01_RS04185	PF03061	Thioesterase superfamily
HHK01_RS04200	PF08331	Domain of unknown function (DUF1730)
HHK01_RS04205	PF12671	Putative amidase domain
HHK01_RS04210	PF00588	SpoU rRNA Methylase family
HHK01_RS04215	PF00881	Nitroreductase family
HHK01_RS04220	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
HHK01_RS04220	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
HHK01_RS04220	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
HHK01_RS04220	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
HHK01_RS04225	PF06798	PrkA serine protein kinase C-terminal domain
HHK01_RS04225	PF08298	PrkA AAA domain
HHK01_RS04230	PF01520	N-acetylmuramoyl-L-alanine amidase
HHK01_RS04230	PF04122	Putative cell wall binding repeat 2
HHK01_RS04235	PF04285	Protein of unknown function (DUF444)
HHK01_RS04245	PF00455	DeoR C terminal sensor domain
HHK01_RS04245	PF08220	DeoR-like helix-turn-helix domain
HHK01_RS04250	PF00294	pfkB family carbohydrate kinase
HHK01_RS04255	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
HHK01_RS04255	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
HHK01_RS04260	PF02660	Glycerol-3-phosphate acyltransferase
HHK01_RS04265	PF07875	Coat F domain
HHK01_RS04270	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
HHK01_RS04270	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
HHK01_RS04280	PF01546	Peptidase family M20/M25/M40
HHK01_RS04285	PF00501	AMP-binding enzyme
HHK01_RS04285	PF14535	AMP-binding enzyme C-terminal domain
HHK01_RS04290	PF05138	Phenylacetic acid catabolic protein
HHK01_RS04315	PF00378	Enoyl-CoA hydratase/isomerase
HHK01_RS04320	PF00378	Enoyl-CoA hydratase/isomerase
HHK01_RS04325	PF00171	Aldehyde dehydrogenase family
HHK01_RS04330	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
HHK01_RS04330	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
HHK01_RS04335	PF02803	Thiolase, C-terminal domain
HHK01_RS04335	PF00108	Thiolase, N-terminal domain
HHK01_RS04340	PF00378	Enoyl-CoA hydratase/isomerase
HHK01_RS04345	PF08223	PaaX-like protein C-terminal domain
HHK01_RS04345	PF07848	PaaX-like protein
HHK01_RS04350	PF03060	Nitronate monooxygenase
HHK01_RS04360	PF02653	Branched-chain amino acid transport system / permease component
HHK01_RS04365	PF00005	ABC transporter
HHK01_RS04365	PF09383	NIL domain
HHK01_RS04375	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
HHK01_RS04375	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
HHK01_RS04380	PF00676	Dehydrogenase E1 component
HHK01_RS04385	PF02779	Transketolase, pyrimidine binding domain
HHK01_RS04385	PF02780	Transketolase, C-terminal domain
HHK01_RS04390	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
HHK01_RS04390	PF00364	Biotin-requiring enzyme
HHK01_RS04390	PF02817	e3 binding domain
HHK01_RS04395	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS04395	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
HHK01_RS04405	PF00199	Catalase
HHK01_RS04405	PF06628	Catalase-related immune-responsive
HHK01_RS04420	PF13538	UvrD-like helicase C-terminal domain
HHK01_RS04425	PF00248	Aldo/keto reductase family
HHK01_RS04430	PF03358	NADPH-dependent FMN reductase
HHK01_RS04445	PF00583	Acetyltransferase (GNAT) family
HHK01_RS04445	PF00795	Carbon-nitrogen hydrolase
HHK01_RS04450	PF14148	YhdB-like protein
HHK01_RS04455	PF04293	SpoVR like protein
HHK01_RS04470	PF03323	Bacillus/Clostridium GerA spore germination protein
HHK01_RS04480	PF00107	Zinc-binding dehydrogenase
HHK01_RS04480	PF08240	Alcohol dehydrogenase GroES-like domain
HHK01_RS04490	PF03772	Competence protein
HHK01_RS04490	PF13567	Domain of unknown function (DUF4131)
HHK01_RS04490	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS04500	PF00375	Sodium:dicarboxylate symporter family
HHK01_RS04505	PF09515	Thiamine transporter protein (Thia_YuaJ)
HHK01_RS04510	PF00664	ABC transporter transmembrane region
HHK01_RS04510	PF00005	ABC transporter
HHK01_RS04515	PF00664	ABC transporter transmembrane region
HHK01_RS04515	PF00005	ABC transporter
HHK01_RS04530	PF10415	Fumarase C C-terminus
HHK01_RS04530	PF00206	Lyase
HHK01_RS04535	PF00269	Small, acid-soluble spore proteins, alpha/beta type
HHK01_RS04550	PF03459	TOBE domain
HHK01_RS04550	PF00005	ABC transporter
HHK01_RS04550	PF17912	MalK OB fold domain
HHK01_RS04555	PF13556	PucR C-terminal helix-turn-helix domain
HHK01_RS04555	PF17853	GGDEF-like domain
HHK01_RS04555	PF07905	Purine catabolism regulatory protein-like family
HHK01_RS04580	PF14398	YheC/D like ATP-grasp
HHK01_RS04585	PF14398	YheC/D like ATP-grasp
HHK01_RS04590	PF14398	YheC/D like ATP-grasp
HHK01_RS04595	PF04286	Protein of unknown function (DUF445)
HHK01_RS04600	PF06133	Control of competence regulator ComK, YlbF/YmcA
HHK01_RS04615	PF04055	Radical SAM superfamily
HHK01_RS04640	PF00005	ABC transporter
HHK01_RS04655	PF13732	Domain of unknown function (DUF4162)
HHK01_RS04655	PF00005	ABC transporter
HHK01_RS04665	PF12320	Type 5 capsule protein repressor C-terminal domain
HHK01_RS04665	PF00149	Calcineurin-like phosphoesterase
HHK01_RS04675	PF01966	HD domain
HHK01_RS04690	PF09680	Family of unknown function
HHK01_RS04695	PF09680	Family of unknown function
HHK01_RS04715	PF01047	MarR family
HHK01_RS04730	PF17099	Tryptophan transporter TrpP
HHK01_RS04735	PF01230	HIT domain
HHK01_RS04740	PF01381	Helix-turn-helix
HHK01_RS04740	PF08671	Anti-repressor SinI
HHK01_RS04745	PF08671	Anti-repressor SinI
HHK01_RS04750	PF08671	Anti-repressor SinI
HHK01_RS04750	PF01381	Helix-turn-helix
HHK01_RS04755	PF04203	Sortase domain
HHK01_RS04760	PF00005	ABC transporter
HHK01_RS04765	PF05975	Bacterial ABC transporter protein EcsB
HHK01_RS04770	PF12787	EcsC protein family
HHK01_RS04775	PF07687	Peptidase dimerisation domain
HHK01_RS04775	PF01546	Peptidase family M20/M25/M40
HHK01_RS04780	PF01569	PAP2 superfamily
HHK01_RS04790	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
HHK01_RS04795	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
HHK01_RS04800	PF03611	PTS system sugar-specific permease component
HHK01_RS04805	PF00107	Zinc-binding dehydrogenase
HHK01_RS04805	PF08240	Alcohol dehydrogenase GroES-like domain
HHK01_RS04810	PF08240	Alcohol dehydrogenase GroES-like domain
HHK01_RS04810	PF00107	Zinc-binding dehydrogenase
HHK01_RS04825	PF00672	HAMP domain
HHK01_RS04825	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS04825	PF07730	Histidine kinase
HHK01_RS04830	PF00196	Bacterial regulatory proteins, luxR family
HHK01_RS04830	PF00072	Response regulator receiver domain
HHK01_RS04835	PF01208	Uroporphyrinogen decarboxylase (URO-D)
HHK01_RS04840	PF00762	Ferrochelatase
HHK01_RS04845	PF01593	Flavin containing amine oxidoreductase
HHK01_RS04855	PF10437	Bacterial lipoate protein ligase C-terminus
HHK01_RS04855	PF03099	Biotin/lipoate A/B protein ligase family
HHK01_RS04860	PF00501	AMP-binding enzyme
HHK01_RS04860	PF13193	AMP-binding enzyme C-terminal domain
HHK01_RS04865	PF01381	Helix-turn-helix
HHK01_RS04865	PF07883	Cupin domain
HHK01_RS04870	PF03591	AzlC protein
HHK01_RS04880	PF01435	Peptidase family M48
HHK01_RS04880	PF16491	CAAX prenyl protease N-terminal, five membrane helices
HHK01_RS04890	PF06338	ComK protein
HHK01_RS04895	PF07676	WD40-like Beta Propeller Repeat
HHK01_RS04895	PF00326	Prolyl oligopeptidase family
HHK01_RS04900	PF09335	SNARE associated Golgi protein
HHK01_RS04905	PF10502	Signal peptidase, peptidase S26 
HHK01_RS04910	PF07690	Major Facilitator Superfamily
HHK01_RS04915	PF12705	PD-(D/E)XK nuclease superfamily
HHK01_RS04915	PF13361	UvrD-like helicase C-terminal domain
HHK01_RS04920	PF12705	PD-(D/E)XK nuclease superfamily
HHK01_RS04920	PF00580	UvrD/REP helicase N-terminal domain
HHK01_RS04920	PF13361	UvrD-like helicase C-terminal domain
HHK01_RS04925	PF10676	Spore germination protein gerPA/gerPF
HHK01_RS04940	PF10737	Spore germination protein GerPC
HHK01_RS04945	PF10803	Spore germination GerPB
HHK01_RS04950	PF10676	Spore germination protein gerPA/gerPF
HHK01_RS04955	PF04235	Protein of unknown function (DUF418)
HHK01_RS04960	PF07457	Protein of unknown function (DUF1516)
HHK01_RS04965	PF03707	Bacterial signalling protein N terminal repeat
HHK01_RS04965	PF00990	Diguanylate cyclase, GGDEF domain
HHK01_RS04965	PF00563	EAL domain
HHK01_RS04975	PF00733	Asparagine synthase
HHK01_RS04975	PF13537	Glutamine amidotransferase domain
HHK01_RS04980	PF01554	MatE
HHK01_RS04985	PF16657	Maltogenic Amylase, C-terminal domain
HHK01_RS04985	PF02903	Alpha amylase, N-terminal ig-like domain
HHK01_RS04985	PF00128	Alpha amylase, catalytic domain
HHK01_RS04990	PF13416	Bacterial extracellular solute-binding protein
HHK01_RS04995	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS05000	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS05005	PF00128	Alpha amylase, catalytic domain
HHK01_RS05005	PF03423	Carbohydrate binding domain (family 25)
HHK01_RS05005	PF01373	Glycosyl hydrolase family 14
HHK01_RS05010	PF00356	Bacterial regulatory proteins, lacI family
HHK01_RS05010	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
HHK01_RS05020	PF02645	Uncharacterised protein, DegV family COG1307
HHK01_RS05025	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
HHK01_RS05025	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
HHK01_RS05035	PF12758	Protein of unknown function (DUF3813)
HHK01_RS05050	PF00326	Prolyl oligopeptidase family
HHK01_RS05055	PF01883	Iron-sulfur cluster assembly protein
HHK01_RS05060	PF02673	Bacitracin resistance protein BacA
HHK01_RS05065	PF14168	YjzC-like protein
HHK01_RS05085	PF02608	ABC transporter substrate-binding protein PnrA-like
HHK01_RS05095	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
HHK01_RS05095	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  
HHK01_RS05100	PF00109	Beta-ketoacyl synthase, N-terminal domain
HHK01_RS05100	PF02801	Beta-ketoacyl synthase, C-terminal domain
HHK01_RS05105	PF10026	Predicted Zn-dependent protease (DUF2268)
HHK01_RS05110	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS05110	PF00005	ABC transporter
HHK01_RS05115	PF00005	ABC transporter
HHK01_RS05115	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS05120	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS05125	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS05130	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
HHK01_RS05135	PF12227	Protein of unknown function (DUF3603)
HHK01_RS05140	PF00579	tRNA synthetases class I (W and Y)
HHK01_RS05150	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
HHK01_RS05155	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS05160	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS05160	PF12911	N-terminal TM domain of oligopeptide transport permease C
HHK01_RS05165	PF00005	ABC transporter
HHK01_RS05165	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS05170	PF00005	ABC transporter
HHK01_RS05170	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS05180	PF13508	Acetyltransferase (GNAT) domain
HHK01_RS05190	PF03960	ArsC family
HHK01_RS05195	PF05389	Negative regulator of genetic competence (MecA)
HHK01_RS05200	PF13091	PLD-like domain
HHK01_RS05200	PF13396	Phospholipase_D-nuclease N-terminal
HHK01_RS05210	PF08439	Oligopeptidase F
HHK01_RS05210	PF01432	Peptidase family M3
HHK01_RS05225	PF01152	Bacterial-like globin
HHK01_RS05245	PF04607	Region found in RelA / SpoT proteins
HHK01_RS05250	PF01513	ATP-NAD kinase
HHK01_RS05255	PF00849	RNA pseudouridylate synthase
HHK01_RS05260	PF00149	Calcineurin-like phosphoesterase
HHK01_RS05265	PF01769	Divalent cation transporter
HHK01_RS05265	PF03448	MgtE intracellular N domain
HHK01_RS05265	PF00571	CBS domain
HHK01_RS05285	PF07098	Protein of unknown function (DUF1360)
HHK01_RS05295	PF03862	SpoVAC/SpoVAEB sporulation membrane protein
HHK01_RS05300	PF07451	Stage V sporulation protein AD (SpoVAD)
HHK01_RS05305	PF03862	SpoVAC/SpoVAEB sporulation membrane protein
HHK01_RS05310	PF04239	Protein of unknown function (DUF421)
HHK01_RS05320	PF14069	Stage VI sporulation protein F
HHK01_RS05330	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS05335	PF13673	Acetyltransferase (GNAT) domain
HHK01_RS05345	PF00756	Putative esterase
HHK01_RS05350	PF16868	NMT1-like family
HHK01_RS05370	PF00085	Thioredoxin
HHK01_RS05375	PF06081	Aromatic acid exporter family member 1
HHK01_RS05385	PF07662	Na+ dependent nucleoside transporter C-terminus
HHK01_RS05385	PF01773	Na+ dependent nucleoside transporter N-terminus
HHK01_RS05395	PF00873	AcrB/AcrD/AcrF family
HHK01_RS05405	PF03741	Integral membrane protein TerC family
HHK01_RS05410	PF04542	Sigma-70 region 2 
HHK01_RS05415	PF12791	Anti-sigma factor N-terminus
HHK01_RS05425	PF02386	Cation transport protein
HHK01_RS05440	PF02310	B12 binding domain
HHK01_RS05440	PF04055	Radical SAM superfamily
HHK01_RS05445	PF01757	Acyltransferase family
HHK01_RS05455	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS05455	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS05455	PF13188	PAS domain
HHK01_RS05455	PF13426	PAS domain
HHK01_RS05455	PF00989	PAS fold
HHK01_RS05460	PF06803	Protein of unknown function (DUF1232)
HHK01_RS05470	PF02743	Cache domain
HHK01_RS05470	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS05470	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS05480	PF00005	ABC transporter
HHK01_RS05485	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS05490	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS05495	PF02872	5'-nucleotidase, C-terminal domain
HHK01_RS05495	PF00149	Calcineurin-like phosphoesterase
HHK01_RS05500	PF01047	MarR family
HHK01_RS05535	PF09953	Uncharacterized protein conserved in bacteria (DUF2187)
HHK01_RS05550	PF07486	Cell Wall Hydrolase
HHK01_RS05565	PF00381	PTS HPr component phosphorylation site
HHK01_RS05570	PF05524	PEP-utilising enzyme, N-terminal
HHK01_RS05570	PF00391	PEP-utilising enzyme, mobile domain
HHK01_RS05570	PF02896	PEP-utilising enzyme, TIM barrel domain
HHK01_RS05575	PF00155	Aminotransferase class I and II
HHK01_RS05580	PF01544	CorA-like Mg2+ transporter protein
HHK01_RS05585	PF11700	Vacuole effluxer Atg22 like
HHK01_RS05590	PF00578	AhpC/TSA family
HHK01_RS05595	PF01584	CheW-like domain
HHK01_RS05595	PF00072	Response regulator receiver domain
HHK01_RS05600	PF14177	YkyB-like protein
HHK01_RS05610	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
HHK01_RS05615	PF02537	CrcB-like protein, Camphor Resistance (CrcB)
HHK01_RS05620	PF01497	Periplasmic binding protein
HHK01_RS05625	PF01032	FecCD transport family
HHK01_RS05630	PF01032	FecCD transport family
HHK01_RS05640	PF03176	MMPL family
HHK01_RS05645	PF00563	EAL domain
HHK01_RS05645	PF00990	Diguanylate cyclase, GGDEF domain
HHK01_RS05645	PF03707	Bacterial signalling protein N terminal repeat
HHK01_RS05655	PF00149	Calcineurin-like phosphoesterase
HHK01_RS05655	PF10518	TAT (twin-arginine translocation) pathway signal sequence
HHK01_RS05665	PF13529	Peptidase_C39 like family
HHK01_RS05690	PF07690	Major Facilitator Superfamily
HHK01_RS05695	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
HHK01_RS05695	PF03466	LysR substrate binding domain
HHK01_RS05700	PF08503	Tetrahydrodipicolinate succinyltransferase N-terminal
HHK01_RS05700	PF00132	Bacterial transferase hexapeptide (six repeats)
HHK01_RS05700	PF14602	Hexapeptide repeat of succinyl-transferase
HHK01_RS05705	PF07687	Peptidase dimerisation domain
HHK01_RS05705	PF01546	Peptidase family M20/M25/M40
HHK01_RS05710	PF00924	Mechanosensitive ion channel
HHK01_RS05715	PF10417	C-terminal domain of 1-Cys peroxiredoxin
HHK01_RS05715	PF00578	AhpC/TSA family
HHK01_RS05720	PF00005	ABC transporter
HHK01_RS05720	PF00664	ABC transporter transmembrane region
HHK01_RS05725	PF00664	ABC transporter transmembrane region
HHK01_RS05725	PF00005	ABC transporter
HHK01_RS05730	PF01654	Cytochrome bd terminal oxidase subunit I
HHK01_RS05735	PF02322	Cytochrome bd terminal oxidase subunit II
HHK01_RS05740	PF02080	TrkA-C domain
HHK01_RS05740	PF02254	TrkA-N domain
HHK01_RS05745	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS05745	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
HHK01_RS05745	PF17770	Ribonuclease J C-terminal domain
HHK01_RS05750	PF07288	Protein of unknown function (DUF1447)
HHK01_RS05765	PF01327	Polypeptide deformylase
HHK01_RS05780	PF00676	Dehydrogenase E1 component
HHK01_RS05785	PF02779	Transketolase, pyrimidine binding domain
HHK01_RS05785	PF02780	Transketolase, C-terminal domain
HHK01_RS05790	PF00364	Biotin-requiring enzyme
HHK01_RS05790	PF02817	e3 binding domain
HHK01_RS05790	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
HHK01_RS05795	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
HHK01_RS05795	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS05805	PF02028	BCCT, betaine/carnitine/choline family transporter
HHK01_RS05825	PF01276	Orn/Lys/Arg decarboxylase, major domain
HHK01_RS05825	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
HHK01_RS05835	PF05256	Uncharacterised protein family (UPF0223)
HHK01_RS05840	PF06335	Protein of unknown function (DUF1054)
HHK01_RS05850	PF00459	Inositol monophosphatase family
HHK01_RS05860	PF00679	Elongation factor G C-terminus
HHK01_RS05860	PF14492	Elongation Factor G, domain II
HHK01_RS05860	PF00009	Elongation factor Tu GTP binding domain
HHK01_RS05860	PF03144	Elongation factor Tu domain 2
HHK01_RS05865	PF14036	YlaH-like protein
HHK01_RS05870	PF09963	Uncharacterized protein conserved in bacteria (DUF2197)
HHK01_RS05880	PF09580	Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
HHK01_RS05885	PF13638	PIN domain
HHK01_RS05885	PF02562	PhoH-like protein
HHK01_RS05895	PF04960	Glutaminase
HHK01_RS05900	PF07408	Protein of unknown function (DUF1507)
HHK01_RS05905	PF01098	Cell cycle protein
HHK01_RS05910	PF00289	Biotin carboxylase, N-terminal domain
HHK01_RS05910	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
HHK01_RS05910	PF00682	HMGL-like
HHK01_RS05910	PF02436	Conserved carboxylase domain
HHK01_RS05910	PF02785	Biotin carboxylase C-terminal domain
HHK01_RS05910	PF00364	Biotin-requiring enzyme
HHK01_RS05915	PF02628	Cytochrome oxidase assembly protein
HHK01_RS05920	PF01040	UbiA prenyltransferase family
HHK01_RS05925	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
HHK01_RS05925	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
HHK01_RS05925	PF00034	Cytochrome c
HHK01_RS05930	PF00115	Cytochrome C and Quinol oxidase polypeptide I
HHK01_RS05935	PF00510	Cytochrome c oxidase subunit III
HHK01_RS05940	PF03626	Prokaryotic Cytochrome C oxidase subunit IV 
HHK01_RS05945	PF09678	Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
HHK01_RS05955	PF01594	AI-2E family transporter
HHK01_RS05965	PF08868	YugN-like family
HHK01_RS05970	PF14504	CAP-associated N-terminal
HHK01_RS05970	PF00188	Cysteine-rich secretory protein family
HHK01_RS05985	PF14003	YlbE-like protein
HHK01_RS05995	PF06133	Control of competence regulator ComK, YlbF/YmcA
HHK01_RS06000	PF09902	Uncharacterized protein conserved in bacteria (DUF2129)
HHK01_RS06020	PF01467	Cytidylyltransferase-like
HHK01_RS06025	PF07670	Nucleoside recognition
HHK01_RS06030	PF01734	Patatin-like phospholipase
HHK01_RS06035	PF05362	Lon protease (S16) C-terminal proteolytic domain
HHK01_RS06035	PF13180	PDZ domain
HHK01_RS06040	PF05636	HIGH Nucleotidyl Transferase
HHK01_RS06045	PF02620	Large ribosomal RNA subunit accumulation protein YceD
HHK01_RS06050	PF01783	Ribosomal L32p protein family
HHK01_RS06060	PF00378	Enoyl-CoA hydratase/isomerase
HHK01_RS06070	PF00583	Acetyltransferase (GNAT) family
HHK01_RS06075	PF02785	Biotin carboxylase C-terminal domain
HHK01_RS06075	PF00289	Biotin carboxylase, N-terminal domain
HHK01_RS06075	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
HHK01_RS06080	PF02785	Biotin carboxylase C-terminal domain
HHK01_RS06080	PF00289	Biotin carboxylase, N-terminal domain
HHK01_RS06080	PF00364	Biotin-requiring enzyme
HHK01_RS06080	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
HHK01_RS06085	PF01039	Carboxyl transferase domain
HHK01_RS06090	PF02558	Ketopantoate reductase PanE/ApbA
HHK01_RS06090	PF08546	Ketopantoate reductase PanE/ApbA C terminal
HHK01_RS06100	PF10079	Bacillithiol biosynthesis BshC 
HHK01_RS06105	PF02381	MraZ protein, putative antitoxin-like
HHK01_RS06110	PF01795	MraW methylase family
HHK01_RS06115	PF04977	Septum formation initiator
HHK01_RS06120	PF03793	PASTA domain
HHK01_RS06120	PF03717	Penicillin-binding Protein dimerisation domain
HHK01_RS06120	PF00905	Penicillin binding protein transpeptidase domain
HHK01_RS06125	PF03793	PASTA domain
HHK01_RS06125	PF00905	Penicillin binding protein transpeptidase domain
HHK01_RS06125	PF03717	Penicillin-binding Protein dimerisation domain
HHK01_RS06130	PF01225	Mur ligase family, catalytic domain
HHK01_RS06130	PF02875	Mur ligase family, glutamate ligase domain
HHK01_RS06130	PF08245	Mur ligase middle domain
HHK01_RS06135	PF00953	Glycosyl transferase family 4
HHK01_RS06140	PF02875	Mur ligase family, glutamate ligase domain
HHK01_RS06140	PF08245	Mur ligase middle domain
HHK01_RS06145	PF01098	Cell cycle protein
HHK01_RS06150	PF01565	FAD binding domain 
HHK01_RS06150	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
HHK01_RS06155	PF08478	POTRA domain, FtsQ-type
HHK01_RS06160	PF05949	Bacterial protein of unknown function (DUF881)
HHK01_RS06165	PF05949	Bacterial protein of unknown function (DUF881)
HHK01_RS06170	PF06947	Protein of unknown function (DUF1290)
HHK01_RS06175	PF02491	SHS2 domain inserted in FTSA
HHK01_RS06180	PF12327	FtsZ family, C-terminal domain
HHK01_RS06180	PF00091	Tubulin/FtsZ family, GTPase domain
HHK01_RS06190	PF03419	Sporulation factor SpoIIGA 
HHK01_RS06195	PF04542	Sigma-70 region 2 
HHK01_RS06195	PF04545	Sigma-70, region 4
HHK01_RS06200	PF04542	Sigma-70 region 2 
HHK01_RS06200	PF04539	Sigma-70 region 3
HHK01_RS06200	PF04545	Sigma-70, region 4
HHK01_RS06205	PF05239	PRC-barrel domain
HHK01_RS06210	PF02578	Multi-copper polyphenol oxidoreductase laccase
HHK01_RS06215	PF01168	Alanine racemase, N-terminal domain
HHK01_RS06220	PF02325	YGGT family
HHK01_RS06225	PF01479	S4 domain
HHK01_RS06225	PF17774	Putative RNA-binding domain in YlmH
HHK01_RS06230	PF05103	DivIVA protein
HHK01_RS06235	PF08264	Anticodon-binding domain of tRNA
HHK01_RS06235	PF00133	tRNA synthetases class I (I, L, M and V)
HHK01_RS06235	PF06827	Zinc finger found in FPG and IleRS
HHK01_RS06245	PF02589	LUD domain
HHK01_RS06260	PF00665	Integrase core domain
HHK01_RS06265	PF01695	IstB-like ATP binding protein
HHK01_RS06275	PF00378	Enoyl-CoA hydratase/isomerase
HHK01_RS06285	PF02754	Cysteine-rich domain
HHK01_RS06290	PF13183	4Fe-4S dicluster domain
HHK01_RS06290	PF11870	Domain of unknown function (DUF3390)
HHK01_RS06290	PF02589	LUD domain
HHK01_RS06295	PF02589	LUD domain
HHK01_RS06300	PF02447	GntP family permease
HHK01_RS06305	PF02595	Glycerate kinase family
HHK01_RS06310	PF17853	GGDEF-like domain
HHK01_RS06310	PF05651	Putative sugar diacid recognition
HHK01_RS06310	PF13556	PucR C-terminal helix-turn-helix domain
HHK01_RS06320	PF01252	Signal peptidase (SPase) II
HHK01_RS06325	PF01479	S4 domain
HHK01_RS06325	PF00849	RNA pseudouridylate synthase
HHK01_RS06330	PF00156	Phosphoribosyl transferase domain
HHK01_RS06335	PF00860	Permease family
HHK01_RS06340	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
HHK01_RS06340	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
HHK01_RS06345	PF01979	Amidohydrolase family
HHK01_RS06350	PF00117	Glutamine amidotransferase class-I
HHK01_RS06350	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
HHK01_RS06355	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
HHK01_RS06355	PF02142	MGS-like domain
HHK01_RS06355	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
HHK01_RS06360	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
HHK01_RS06360	PF00175	Oxidoreductase NAD-binding domain 
HHK01_RS06360	PF00970	Oxidoreductase FAD-binding domain
HHK01_RS06365	PF01180	Dihydroorotate dehydrogenase
HHK01_RS06370	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
HHK01_RS06375	PF00156	Phosphoribosyl transferase domain
HHK01_RS06380	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
HHK01_RS06385	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS06390	PF12911	N-terminal TM domain of oligopeptide transport permease C
HHK01_RS06390	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS06395	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS06395	PF00005	ABC transporter
HHK01_RS06400	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS06400	PF00005	ABC transporter
HHK01_RS06405	PF05670	NFACT protein RNA binding domain
HHK01_RS06410	PF00689	Cation transporting ATPase, C-terminus
HHK01_RS06410	PF00690	Cation transporter/ATPase, N-terminus
HHK01_RS06415	PF03755	YicC-like family, N-terminal region 
HHK01_RS06415	PF08340	Domain of unknown function (DUF1732)
HHK01_RS06420	PF04025	Domain of unknown function (DUF370)
HHK01_RS06425	PF00625	Guanylate kinase
HHK01_RS06430	PF01192	RNA polymerase Rpb6 
HHK01_RS06435	PF04127	DNA / pantothenate metabolism flavoprotein
HHK01_RS06435	PF02441	Flavoprotein
HHK01_RS06440	PF00271	Helicase conserved C-terminal domain
HHK01_RS06440	PF18074	Primosomal protein N C-terminal domain
HHK01_RS06440	PF18319	PriA DNA helicase Cys-rich region (CRR) domain
HHK01_RS06440	PF04851	Type III restriction enzyme, res subunit
HHK01_RS06440	PF17764	3′ DNA-binding domain (3′BD)
HHK01_RS06445	PF02911	Formyl transferase, C-terminal domain
HHK01_RS06445	PF00551	Formyl transferase
HHK01_RS06450	PF01189	16S rRNA methyltransferase RsmB/F
HHK01_RS06450	PF01029	NusB family
HHK01_RS06460	PF00069	Protein kinase domain
HHK01_RS06460	PF03793	PASTA domain
HHK01_RS06465	PF16745	RsgA N-terminal domain
HHK01_RS06465	PF03193	RsgA GTPase
HHK01_RS06470	PF00834	Ribulose-phosphate 3 epimerase family
HHK01_RS06475	PF04265	Thiamin pyrophosphokinase, vitamin B1 binding domain
HHK01_RS06475	PF04263	Thiamin pyrophosphokinase, catalytic domain
HHK01_RS06480	PF08183	Stage V sporulation protein family
HHK01_RS06485	PF00830	Ribosomal L28 family
HHK01_RS06495	PF03780	Asp23 family, cell envelope-related function
HHK01_RS06500	PF13684	Dihydroxyacetone kinase family
HHK01_RS06500	PF02734	DAK2 domain
HHK01_RS06505	PF01842	ACT domain
HHK01_RS06505	PF03315	Serine dehydratase beta chain
HHK01_RS06510	PF03313	Serine dehydratase alpha chain
HHK01_RS06515	PF00270	DEAD/DEAH box helicase
HHK01_RS06515	PF00271	Helicase conserved C-terminal domain
HHK01_RS06515	PF17191	RecG wedge domain
HHK01_RS06520	PF07687	Peptidase dimerisation domain
HHK01_RS06520	PF01546	Peptidase family M20/M25/M40
HHK01_RS06525	PF03806	AbgT putative transporter family
HHK01_RS06540	PF02504	Fatty acid synthesis protein
HHK01_RS06545	PF00698	Acyl transferase domain
HHK01_RS06555	PF00550	Phosphopantetheine attachment site
HHK01_RS06560	PF00035	Double-stranded RNA binding motif
HHK01_RS06560	PF14622	Ribonuclease-III-like
HHK01_RS06565	PF06470	SMC proteins Flexible Hinge Domain
HHK01_RS06565	PF02463	RecF/RecN/SMC N terminal domain
HHK01_RS06575	PF02881	SRP54-type protein, helical bundle domain
HHK01_RS06575	PF00448	SRP54-type protein, GTPase domain
HHK01_RS06580	PF04297	Putative helix-turn-helix protein, YlxM / p13 like
HHK01_RS06585	PF00448	SRP54-type protein, GTPase domain
HHK01_RS06585	PF02881	SRP54-type protein, helical bundle domain
HHK01_RS06585	PF02978	Signal peptide binding domain
HHK01_RS06610	PF00886	Ribosomal protein S16
HHK01_RS06625	PF05239	PRC-barrel domain
HHK01_RS06625	PF01782	RimM N-terminal domain
HHK01_RS06630	PF01746	tRNA (Guanine-1)-methyltransferase
HHK01_RS06635	PF01245	Ribosomal protein L19
HHK01_RS06640	PF10502	Signal peptidase, peptidase S26 
HHK01_RS06645	PF01926	50S ribosome-binding GTPase
HHK01_RS06650	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
HHK01_RS06650	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS06655	PF00764	Arginosuccinate synthase
HHK01_RS06660	PF14698	Argininosuccinate lyase C-terminal
HHK01_RS06660	PF00206	Lyase
HHK01_RS06665	PF00117	Glutamine amidotransferase class-I
HHK01_RS06665	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
HHK01_RS06670	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
HHK01_RS06670	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
HHK01_RS06675	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
HHK01_RS06675	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
HHK01_RS06685	PF00011	Hsp20/alpha crystallin family
HHK01_RS06690	PF00270	DEAD/DEAH box helicase
HHK01_RS06690	PF09369	Domain of unknown function (DUF1998)
HHK01_RS06690	PF00271	Helicase conserved C-terminal domain
HHK01_RS06695	PF13482	RNase_H superfamily
HHK01_RS06700	PF11122	Inner spore coat protein D
HHK01_RS06705	PF06908	YspA SLOG family
HHK01_RS06710	PF05103	DivIVA protein
HHK01_RS06720	PF02926	THUMP domain
HHK01_RS06720	PF01170	Putative RNA methylase family UPF0020
HHK01_RS06730	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
HHK01_RS06745	PF02797	Chalcone and stilbene synthases, C-terminal domain
HHK01_RS06745	PF00195	Chalcone and stilbene synthases, N-terminal domain
HHK01_RS06750	PF04140	Isoprenylcysteine carboxyl methyltransferase (ICMT) family 
HHK01_RS06755	PF00350	Dynamin family
HHK01_RS06760	PF01367	5'-3' exonuclease, C-terminal SAM fold
HHK01_RS06760	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
HHK01_RS06770	PF13456	Reverse transcriptase-like
HHK01_RS06785	PF00313	'Cold-shock' DNA-binding domain
HHK01_RS06790	PF02742	Iron dependent repressor, metal binding and dimerisation domain
HHK01_RS06790	PF01325	Iron dependent repressor, N-terminal DNA binding domain
HHK01_RS06800	PF01209	ubiE/COQ5 methyltransferase family
HHK01_RS06810	PF01268	Formate--tetrahydrofolate ligase
HHK01_RS06815	PF01966	HD domain
HHK01_RS06820	PF13769	Virulence factor
HHK01_RS06820	PF08712	Scaffold protein Nfu/NifU N terminal
HHK01_RS06825	PF06491	Disulphide isomerase
HHK01_RS06830	PF14005	YpjP-like protein
HHK01_RS06835	PF02342	TerD domain
HHK01_RS06840	PF03741	Integral membrane protein TerC family
HHK01_RS06865	PF14266	Putative component of 'biosynthetic module'
HHK01_RS06870	PF05816	Toxic anion resistance protein (TelA)
HHK01_RS06875	PF02342	TerD domain
HHK01_RS06880	PF02342	TerD domain
HHK01_RS06890	PF00303	Thymidylate synthase
HHK01_RS06895	PF00186	Dihydrofolate reductase
HHK01_RS06900	PF02645	Uncharacterised protein, DegV family COG1307
HHK01_RS06915	PF01625	Peptide methionine sulfoxide reductase
HHK01_RS06920	PF01641	SelR domain
HHK01_RS06925	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
HHK01_RS06930	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
HHK01_RS06940	PF00672	HAMP domain
HHK01_RS06940	PF05227	CHASE3 domain
HHK01_RS06940	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
HHK01_RS06945	PF06855	YozE SAM-like fold
HHK01_RS06955	PF14162	YozD-like protein
HHK01_RS06965	PF14191	YodL-like
HHK01_RS06975	PF01048	Phosphorylase superfamily
HHK01_RS06985	PF01471	Putative peptidoglycan binding domain
HHK01_RS06985	PF17820	PDZ domain
HHK01_RS06985	PF03572	Peptidase family S41
HHK01_RS06990	PF03816	Cell envelope-related transcriptional attenuator domain
HHK01_RS07000	PF01047	MarR family
HHK01_RS07005	PF07690	Major Facilitator Superfamily
HHK01_RS07050	PF01554	MatE
HHK01_RS07055	PF11121	Protein of unknown function (DUF2639)
HHK01_RS07065	PF09335	SNARE associated Golgi protein
HHK01_RS07070	PF02673	Bacitracin resistance protein BacA
HHK01_RS07080	PF01872	RibD C-terminal domain
HHK01_RS07080	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
HHK01_RS07085	PF00677	Lumazine binding domain
HHK01_RS07090	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
HHK01_RS07090	PF00925	GTP cyclohydrolase II
HHK01_RS07095	PF00885	6,7-dimethyl-8-ribityllumazine synthase
HHK01_RS07100	PF05067	Manganese containing catalase
HHK01_RS07105	PF00860	Permease family
HHK01_RS07110	PF01678	Diaminopimelate epimerase
HHK01_RS07115	PF01068	ATP dependent DNA ligase domain
HHK01_RS07120	PF02735	Ku70/Ku80 beta-barrel domain
HHK01_RS07135	PF07690	Major Facilitator Superfamily
HHK01_RS07140	PF04715	Anthranilate synthase component I, N terminal region
HHK01_RS07140	PF00425	chorismate binding enzyme
HHK01_RS07145	PF00117	Glutamine amidotransferase class-I
HHK01_RS07150	PF02885	Glycosyl transferase family, helical bundle domain
HHK01_RS07150	PF00591	Glycosyl transferase family, a/b domain
HHK01_RS07155	PF00218	Indole-3-glycerol phosphate synthase
HHK01_RS07160	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
HHK01_RS07165	PF00291	Pyridoxal-phosphate dependent enzyme
HHK01_RS07170	PF00290	Tryptophan synthase alpha chain
HHK01_RS07175	PF13649	Methyltransferase domain
HHK01_RS07190	PF03746	LamB/YcsF family
HHK01_RS07195	PF02626	Carboxyltransferase domain, subdomain A and B 
HHK01_RS07200	PF02682	Carboxyltransferase domain, subdomain C and D
HHK01_RS07205	PF02779	Transketolase, pyrimidine binding domain
HHK01_RS07205	PF00676	Dehydrogenase E1 component
HHK01_RS07205	PF16870	2-oxoglutarate dehydrogenase C-terminal
HHK01_RS07205	PF16078	2-oxoglutarate dehydrogenase N-terminus
HHK01_RS07210	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
HHK01_RS07210	PF00364	Biotin-requiring enzyme
HHK01_RS07210	PF02817	e3 binding domain
HHK01_RS07215	PF01966	HD domain
HHK01_RS07230	PF13673	Acetyltransferase (GNAT) domain
HHK01_RS07235	PF00128	Alpha amylase, catalytic domain
HHK01_RS07235	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
HHK01_RS07235	PF17999	Pullulanase N1-terminal domain
HHK01_RS07245	PF00999	Sodium/hydrogen exchanger family
HHK01_RS07245	PF02254	TrkA-N domain
HHK01_RS07245	PF02080	TrkA-C domain
HHK01_RS07250	PF01594	AI-2E family transporter
HHK01_RS07255	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS07260	PF03323	Bacillus/Clostridium GerA spore germination protein
HHK01_RS07315	PF07690	Major Facilitator Superfamily
HHK01_RS07320	PF01568	Molydopterin dinucleotide binding domain
HHK01_RS07320	PF00384	Molybdopterin oxidoreductase
HHK01_RS07320	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
HHK01_RS07325	PF00085	Thioredoxin
HHK01_RS07330	PF01522	Polysaccharide deacetylase
HHK01_RS07335	PF00005	ABC transporter
HHK01_RS07340	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS07355	PF00534	Glycosyl transferases group 1
HHK01_RS07370	PF07875	Coat F domain
HHK01_RS07375	PF00892	EamA-like transporter family
HHK01_RS07380	PF00561	alpha/beta hydrolase fold
HHK01_RS07400	PF03100	CcmE
HHK01_RS07405	PF01578	Cytochrome C assembly protein
HHK01_RS07405	PF16327	Cytochrome c-type biogenesis protein CcmF C-terminal
HHK01_RS07410	PF03918	Cytochrome C biogenesis protein
HHK01_RS07425	PF00005	ABC transporter
HHK01_RS07435	PF01578	Cytochrome C assembly protein
HHK01_RS07445	PF00578	AhpC/TSA family
HHK01_RS07470	PF01545	Cation efflux family
HHK01_RS07470	PF16916	Dimerisation domain of Zinc Transporter
HHK01_RS07475	PF01022	Bacterial regulatory protein, arsR family
HHK01_RS07490	PF07731	Multicopper oxidase
HHK01_RS07490	PF07732	Multicopper oxidase
HHK01_RS07490	PF00394	Multicopper oxidase
HHK01_RS07495	PF01566	Natural resistance-associated macrophage protein
HHK01_RS07505	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS07505	PF18698	Histidine kinase sensor domain
HHK01_RS07505	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS07505	PF00989	PAS fold
HHK01_RS07505	PF00672	HAMP domain
HHK01_RS07510	PF00072	Response regulator receiver domain
HHK01_RS07510	PF00486	Transcriptional regulatory protein, C terminal
HHK01_RS07520	PF01790	Prolipoprotein diacylglyceryl transferase
HHK01_RS07530	PF14045	YIEGIA protein
HHK01_RS07545	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS07545	PF00672	HAMP domain
HHK01_RS07545	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS07550	PF00486	Transcriptional regulatory protein, C terminal
HHK01_RS07550	PF00072	Response regulator receiver domain
HHK01_RS07565	PF01810	LysE type translocator
HHK01_RS07575	PF01638	HxlR-like helix-turn-helix
HHK01_RS07585	PF07690	Major Facilitator Superfamily
HHK01_RS07595	PF00248	Aldo/keto reductase family
HHK01_RS07615	PF00521	DNA gyrase/topoisomerase IV, subunit A
HHK01_RS07615	PF03989	DNA gyrase C-terminal domain, beta-propeller
HHK01_RS07620	PF00204	DNA gyrase B
HHK01_RS07620	PF00986	DNA gyrase B subunit, carboxyl terminus
HHK01_RS07620	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS07620	PF01751	Toprim domain
HHK01_RS07625	PF13380	CoA binding domain
HHK01_RS07630	PF00860	Permease family
HHK01_RS07645	PF02660	Glycerol-3-phosphate acyltransferase
HHK01_RS07650	PF13115	YtkA-like
HHK01_RS07655	PF00989	PAS fold
HHK01_RS07655	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS07655	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS07655	PF13426	PAS domain
HHK01_RS07655	PF13188	PAS domain
HHK01_RS07670	PF03061	Thioesterase superfamily
HHK01_RS07675	PF17866	AAA lid domain
HHK01_RS07675	PF00004	ATPase family associated with various cellular activities (AAA)
HHK01_RS07690	PF13040	Fur-regulated basic protein B
HHK01_RS07695	PF00330	Aconitase family (aconitate hydratase)
HHK01_RS07695	PF00694	Aconitase C-terminal domain
HHK01_RS07710	PF08179	Small acid-soluble spore protein P family
HHK01_RS07715	PF02667	Short chain fatty acid transporter
HHK01_RS07725	PF03841	L-seryl-tRNA selenium transferase
HHK01_RS07725	PF12390	Selenocysteine synthase N terminal
HHK01_RS07735	PF09105	Elongation factor SelB, winged helix 
HHK01_RS07735	PF09106	Elongation factor SelB, winged helix 
HHK01_RS07735	PF09107	Elongation factor SelB, winged helix 
HHK01_RS07735	PF00009	Elongation factor Tu GTP binding domain
HHK01_RS07735	PF03144	Elongation factor Tu domain 2
HHK01_RS07740	PF03630	Fumble 
HHK01_RS07745	PF13476	AAA domain
HHK01_RS07750	PF12320	Type 5 capsule protein repressor C-terminal domain
HHK01_RS07750	PF00149	Calcineurin-like phosphoesterase
HHK01_RS07770	PF00392	Bacterial regulatory proteins, gntR family
HHK01_RS07770	PF07702	UTRA domain
HHK01_RS07775	PF16657	Maltogenic Amylase, C-terminal domain
HHK01_RS07775	PF00128	Alpha amylase, catalytic domain
HHK01_RS07780	PF00367	phosphotransferase system, EIIB
HHK01_RS07780	PF02378	Phosphotransferase system, EIIC 
HHK01_RS07790	PF11084	Protein of unknown function (DUF2621)
HHK01_RS07795	PF07301	Protein of unknown function (DUF1453)
HHK01_RS07800	PF00072	Response regulator receiver domain
HHK01_RS07805	PF02683	Cytochrome C biogenesis protein transmembrane region
HHK01_RS07815	PF03672	Uncharacterised protein family (UPF0154)
HHK01_RS07825	PF00456	Transketolase, thiamine diphosphate binding domain
HHK01_RS07825	PF02779	Transketolase, pyrimidine binding domain
HHK01_RS07825	PF02780	Transketolase, C-terminal domain
HHK01_RS07830	PF05979	Bacterial protein of unknown function (DUF896)
HHK01_RS07835	PF01726	LexA DNA binding domain
HHK01_RS07835	PF00717	Peptidase S24-like
HHK01_RS07840	PF00120	Glutamine synthetase, catalytic domain
HHK01_RS07840	PF03951	Glutamine synthetase, beta-Grasp domain
HHK01_RS07845	PF13411	MerR HTH family regulatory protein
HHK01_RS07850	PF06838	Methionine gamma-lyase 
HHK01_RS07855	PF01926	50S ribosome-binding GTPase
HHK01_RS07855	PF13167	GTP-binding GTPase N-terminal
HHK01_RS07855	PF16360	GTP-binding GTPase Middle Region
HHK01_RS07860	PF03458	UPF0126 domain
HHK01_RS07865	PF00004	ATPase family associated with various cellular activities (AAA)
HHK01_RS07865	PF17866	AAA lid domain
HHK01_RS07870	PF17209	Hfq protein
HHK01_RS07880	PF01119	DNA mismatch repair protein, C-terminal domain
HHK01_RS07880	PF08676	MutL C terminal dimerisation domain
HHK01_RS07885	PF00488	MutS domain V
HHK01_RS07885	PF05190	MutS family domain IV
HHK01_RS07885	PF05192	MutS domain III
HHK01_RS07885	PF05188	MutS domain II
HHK01_RS07885	PF01624	MutS domain I
HHK01_RS07895	PF13472	GDSL-like Lipase/Acylhydrolase family
HHK01_RS07905	PF07687	Peptidase dimerisation domain
HHK01_RS07905	PF01546	Peptidase family M20/M25/M40
HHK01_RS07910	PF03606	C4-dicarboxylate anaerobic carrier
HHK01_RS07915	PF00128	Alpha amylase, catalytic domain
HHK01_RS07915	PF02903	Alpha amylase, N-terminal ig-like domain
HHK01_RS07915	PF00395	S-layer homology domain
HHK01_RS07930	PF07724	AAA domain (Cdc48 subfamily)
HHK01_RS07930	PF17871	AAA lid domain
HHK01_RS07930	PF10431	C-terminal, D2-small domain, of ClpB protein 
HHK01_RS07930	PF00004	ATPase family associated with various cellular activities (AAA)
HHK01_RS07935	PF01432	Peptidase family M3
HHK01_RS07935	PF08439	Oligopeptidase F
HHK01_RS07940	PF03601	Conserved hypothetical protein 698
HHK01_RS07945	PF00291	Pyridoxal-phosphate dependent enzyme
HHK01_RS07950	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
HHK01_RS07950	PF03466	LysR substrate binding domain
HHK01_RS07965	PF00296	Luciferase-like monooxygenase
HHK01_RS07970	PF16363	GDP-mannose 4,6 dehydratase
HHK01_RS07975	PF01078	Magnesium chelatase, subunit ChlI
HHK01_RS07975	PF13335	Magnesium chelatase, subunit ChlI C-terminal
HHK01_RS07995	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
HHK01_RS07995	PF05043	Mga helix-turn-helix domain
HHK01_RS07995	PF00874	PRD domain
HHK01_RS07995	PF08279	HTH domain
HHK01_RS08000	PF00232	Glycosyl hydrolase family 1
HHK01_RS08005	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
HHK01_RS08010	PF02378	Phosphotransferase system, EIIC 
HHK01_RS08015	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
HHK01_RS08020	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
HHK01_RS08035	PF13276	HTH-like domain
HHK01_RS08035	PF13333	Integrase core domain
HHK01_RS08035	PF00665	Integrase core domain
HHK01_RS08115	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS08120	PF13847	Methyltransferase domain
HHK01_RS08125	PF01695	IstB-like ATP binding protein
HHK01_RS08140	PF00534	Glycosyl transferases group 1
HHK01_RS08160	PF01370	NAD dependent epimerase/dehydratase family
HHK01_RS08165	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
HHK01_RS08165	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
HHK01_RS08165	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
HHK01_RS08170	PF00534	Glycosyl transferases group 1
HHK01_RS08170	PF13477	Glycosyl transferase 4-like
HHK01_RS08180	PF02397	Bacterial sugar transferase
HHK01_RS08190	PF07963	Prokaryotic N-terminal methylation motif
HHK01_RS08190	PF08334	Type II secretion system (T2SS), protein G
HHK01_RS08195	PF00483	Nucleotidyl transferase
HHK01_RS08200	PF02719	Polysaccharide biosynthesis protein
HHK01_RS08210	PF13614	AAA domain
HHK01_RS08215	PF13807	G-rich domain on putative tyrosine kinase
HHK01_RS08215	PF02706	Chain length determinant protein
HHK01_RS08220	PF03816	Cell envelope-related transcriptional attenuator domain
HHK01_RS08225	PF10628	Outer spore coat protein E (CotE)
HHK01_RS08235	PF06133	Control of competence regulator ComK, YlbF/YmcA
HHK01_RS08240	PF01938	TRAM domain
HHK01_RS08240	PF00919	Uncharacterized protein family UPF0004
HHK01_RS08240	PF04055	Radical SAM superfamily
HHK01_RS08245	PF00155	Aminotransferase class I and II
HHK01_RS08250	PF00107	Zinc-binding dehydrogenase
HHK01_RS08250	PF08240	Alcohol dehydrogenase GroES-like domain
HHK01_RS08260	PF04232	Stage V sporulation protein S (SpoVS)
HHK01_RS08265	PF13277	YmdB-like protein
HHK01_RS08270	PF01966	HD domain
HHK01_RS08270	PF12072	Domain of unknown function (DUF3552)
HHK01_RS08270	PF00013	KH domain
HHK01_RS08275	PF00154	recA bacterial DNA recombination protein
HHK01_RS08280	PF02464	Competence-damaged protein
HHK01_RS08280	PF18146	Damage-inducible protein CinA KH domain
HHK01_RS08280	PF00994	Probable molybdopterin binding domain
HHK01_RS08285	PF01066	CDP-alcohol phosphatidyltransferase
HHK01_RS08290	PF13464	Domain of unknown function (DUF4115)
HHK01_RS08295	PF11868	Protein of unknown function (DUF3388)
HHK01_RS08300	PF11588	Protein of unknown function (DUF3243)
HHK01_RS08310	PF00675	Insulinase (Peptidase family M16)
HHK01_RS08310	PF05193	Peptidase M16 inactive domain
HHK01_RS08315	PF05193	Peptidase M16 inactive domain
HHK01_RS08340	PF02653	Branched-chain amino acid transport system / permease component
HHK01_RS08345	PF02653	Branched-chain amino acid transport system / permease component
HHK01_RS08350	PF00005	ABC transporter
HHK01_RS08355	PF02608	ABC transporter substrate-binding protein PnrA-like
HHK01_RS08360	PF07702	UTRA domain
HHK01_RS08360	PF00392	Bacterial regulatory proteins, gntR family
HHK01_RS08365	PF09397	Ftsk gamma domain
HHK01_RS08365	PF01580	FtsK/SpoIIIE family
HHK01_RS08365	PF17854	FtsK alpha domain
HHK01_RS08370	PF14035	YlzJ-like protein
HHK01_RS08375	PF00574	Clp protease
HHK01_RS08380	PF17770	Ribonuclease J C-terminal domain
HHK01_RS08380	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS08380	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
HHK01_RS08385	PF00701	Dihydrodipicolinate synthetase family
HHK01_RS08390	PF00696	Amino acid kinase family
HHK01_RS08390	PF13840	ACT domain 
HHK01_RS08395	PF01118	Semialdehyde dehydrogenase, NAD binding domain
HHK01_RS08395	PF02774	Semialdehyde dehydrogenase, dimerisation domain
HHK01_RS08400	PF02441	Flavoprotein
HHK01_RS08405	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
HHK01_RS08405	PF16924	Dipicolinate synthase subunit A N-terminal domain
HHK01_RS08410	PF05239	PRC-barrel domain
HHK01_RS08415	PF05193	Peptidase M16 inactive domain
HHK01_RS08415	PF00675	Insulinase (Peptidase family M16)
HHK01_RS08420	PF01522	Polysaccharide deacetylase
HHK01_RS08425	PF00013	KH domain
HHK01_RS08425	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
HHK01_RS08425	PF00575	S1 RNA binding domain
HHK01_RS08425	PF01138	3' exoribonuclease family, domain 1
HHK01_RS08425	PF03725	3' exoribonuclease family, domain 2
HHK01_RS08430	PF00312	Ribosomal protein S15
HHK01_RS08435	PF06574	FAD synthetase
HHK01_RS08435	PF01687	Riboflavin kinase
HHK01_RS08440	PF01509	TruB family pseudouridylate synthase (N terminal domain)
HHK01_RS08440	PF16198	tRNA pseudouridylate synthase B C-terminal domain
HHK01_RS08445	PF02033	Ribosome-binding factor A
HHK01_RS08450	PF04456	Protein of unknown function (DUF503)
HHK01_RS08455	PF11987	Translation-initiation factor 2
HHK01_RS08455	PF04760	Translation initiation factor IF-2, N-terminal region
HHK01_RS08455	PF00009	Elongation factor Tu GTP binding domain
HHK01_RS08460	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
HHK01_RS08465	PF04296	Protein of unknown function (DUF448)
HHK01_RS08470	PF13184	NusA-like KH domain
HHK01_RS08470	PF08529	NusA N-terminal domain
HHK01_RS08470	PF00575	S1 RNA binding domain
HHK01_RS08475	PF02576	RimP N-terminal domain
HHK01_RS08475	PF17384	RimP C-terminal SH3 domain
HHK01_RS08480	PF14480	DNA polymerase III polC-type N-terminus I
HHK01_RS08480	PF11490	DNA polymerase III polC-type N-terminus II
HHK01_RS08480	PF07733	Bacterial DNA polymerase III alpha NTPase domain
HHK01_RS08480	PF14579	Helix-hairpin-helix motif
HHK01_RS08480	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
HHK01_RS08480	PF02811	PHP domain
HHK01_RS08480	PF00929	Exonuclease
HHK01_RS08485	PF03129	Anticodon binding domain
HHK01_RS08485	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
HHK01_RS08485	PF04073	Aminoacyl-tRNA editing domain
HHK01_RS08490	PF13180	PDZ domain
HHK01_RS08490	PF02163	Peptidase family M50
HHK01_RS08495	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
HHK01_RS08495	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
HHK01_RS08495	PF13288	DXP reductoisomerase C-terminal domain
HHK01_RS08505	PF01255	Putative undecaprenyl diphosphate synthase
HHK01_RS08525	PF01765	Ribosome recycling factor
HHK01_RS08530	PF00696	Amino acid kinase family
HHK01_RS08535	PF00889	Elongation factor TS
HHK01_RS08540	PF00318	Ribosomal protein S2
HHK01_RS08550	PF04545	Sigma-70, region 4
HHK01_RS08550	PF04539	Sigma-70 region 3
HHK01_RS08550	PF04542	Sigma-70 region 2 
HHK01_RS08555	PF03975	CheD chemotactic sensory transduction
HHK01_RS08560	PF04509	CheC-like family
HHK01_RS08565	PF01584	CheW-like domain
HHK01_RS08570	PF01584	CheW-like domain
HHK01_RS08570	PF02895	Signal transducing histidine kinase, homodimeric domain
HHK01_RS08570	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS08570	PF01627	Hpt domain
HHK01_RS08570	PF07194	P2 response regulator binding domain
HHK01_RS08575	PF01339	CheB methylesterase
HHK01_RS08575	PF00072	Response regulator receiver domain
HHK01_RS08580	PF10609	NUBPL iron-transfer P-loop NTPase
HHK01_RS08585	PF00448	SRP54-type protein, GTPase domain
HHK01_RS08590	PF00771	FHIPEP family
HHK01_RS08595	PF01312	FlhB HrpN YscU SpaS Family
HHK01_RS08600	PF01311	Bacterial export proteins, family 1
HHK01_RS08605	PF01313	Bacterial export proteins, family 3
HHK01_RS08610	PF00813	FliP family
HHK01_RS08615	PF04347	Flagellar biosynthesis protein, FliO
HHK01_RS08620	PF00072	Response regulator receiver domain
HHK01_RS08625	PF04509	CheC-like family
HHK01_RS08625	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term
HHK01_RS08630	PF02154	Flagellar motor switch protein FliM
HHK01_RS08630	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term
HHK01_RS08635	PF03748	Flagellar basal body-associated protein FliL
HHK01_RS08640	PF06289	Flagellar and Swarming motility proteins
HHK01_RS08645	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
HHK01_RS08645	PF00460	Flagella basal body rod protein
HHK01_RS08645	PF07559	Flagellar basal body protein FlaE
HHK01_RS08655	PF03963	Flagellar hook capping protein - N-terminal region
HHK01_RS08670	PF02050	Flagellar FliJ protein
HHK01_RS08675	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
HHK01_RS08675	PF02874	ATP synthase alpha/beta family, beta-barrel domain
HHK01_RS08675	PF18269	T3SS EscN ATPase C-terminal domain
HHK01_RS08685	PF01706	FliG C-terminal domain
HHK01_RS08685	PF14841	FliG middle domain
HHK01_RS08685	PF14842	FliG N-terminal domain
HHK01_RS08690	PF01514	Secretory protein of YscJ/FliF family
HHK01_RS08690	PF08345	Flagellar M-ring protein C-terminal
HHK01_RS08695	PF02049	Flagellar hook-basal body complex protein FliE
HHK01_RS08700	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
HHK01_RS08700	PF00460	Flagella basal body rod protein
HHK01_RS08705	PF00460	Flagella basal body rod protein
HHK01_RS08710	PF06018	CodY GAF-like domain
HHK01_RS08710	PF08222	CodY helix-turn-helix domain
HHK01_RS08715	PF10431	C-terminal, D2-small domain, of ClpB protein 
HHK01_RS08715	PF00004	ATPase family associated with various cellular activities (AAA)
HHK01_RS08715	PF07724	AAA domain (Cdc48 subfamily)
HHK01_RS08720	PF00227	Proteasome subunit
HHK01_RS08725	PF02899	Phage integrase, N-terminal SAM-like domain
HHK01_RS08725	PF00589	Phage integrase family
HHK01_RS08730	PF01134	Glucose inhibited division protein A
HHK01_RS08735	PF01131	DNA topoisomerase
HHK01_RS08735	PF01751	Toprim domain
HHK01_RS08735	PF01396	Topoisomerase DNA binding C4 zinc finger
HHK01_RS08740	PF02481	DNA recombination-mediator protein A
HHK01_RS08745	PF02629	CoA binding domain
HHK01_RS08745	PF00549	CoA-ligase
HHK01_RS08750	PF08442	ATP-grasp domain
HHK01_RS08750	PF00549	CoA-ligase
HHK01_RS08755	PF01312	FlhB HrpN YscU SpaS Family
HHK01_RS08765	PF01351	Ribonuclease HII
HHK01_RS08775	PF14179	YppG-like protein
HHK01_RS08790	PF10720	Protein of unknown function (DUF2515)
HHK01_RS08795	PF03838	Recombination protein U
HHK01_RS08800	PF00912	Transglycosylase
HHK01_RS08800	PF00905	Penicillin binding protein transpeptidase domain
HHK01_RS08810	PF10576	Iron-sulfur binding domain of endonuclease III
HHK01_RS08810	PF00633	Helix-hairpin-helix motif
HHK01_RS08810	PF00730	HhH-GPD superfamily base excision DNA repair protein
HHK01_RS08815	PF07261	Replication initiation and membrane attachment
HHK01_RS08820	PF00152	tRNA synthetases class II (D, K and N) 
HHK01_RS08820	PF01336	OB-fold nucleic acid binding domain
HHK01_RS08825	PF00155	Aminotransferase class I and II
HHK01_RS08830	PF17881	Domain of unknown function (DUF5590)
HHK01_RS08830	PF03413	Peptidase propeptide and YPEB domain
HHK01_RS08835	PF14084	Protein of unknown function (DUF4264)
HHK01_RS08840	PF13307	Helicase C-terminal domain
HHK01_RS08840	PF04851	Type III restriction enzyme, res subunit
HHK01_RS08840	PF00929	Exonuclease
HHK01_RS08845	PF02261	Aspartate decarboxylase
HHK01_RS08850	PF02569	Pantoate-beta-alanine ligase
HHK01_RS08855	PF02548	Ketopantoate hydroxymethyltransferase
HHK01_RS08860	PF02237	Biotin protein ligase C terminal domain
HHK01_RS08860	PF03099	Biotin/lipoate A/B protein ligase family
HHK01_RS08860	PF08279	HTH domain
HHK01_RS08865	PF01743	Poly A polymerase head domain
HHK01_RS08865	PF12627	Probable RNA and SrmB- binding site of polymerase A
HHK01_RS08865	PF13735	tRNA nucleotidyltransferase domain 2 putative
HHK01_RS08870	PF13439	Glycosyltransferase Family 4
HHK01_RS08870	PF00534	Glycosyl transferases group 1
HHK01_RS08875	PF02585	GlcNAc-PI de-N-acetylase
HHK01_RS08880	PF02142	MGS-like domain
HHK01_RS08885	PF05173	Dihydrodipicolinate reductase, C-terminus
HHK01_RS08885	PF01113	Dihydrodipicolinate reductase, N-terminus
HHK01_RS08890	PF03819	MazG nucleotide pyrophosphohydrolase domain
HHK01_RS08895	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
HHK01_RS08895	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
HHK01_RS08900	PF04298	Putative neutral zinc metallopeptidase
HHK01_RS08905	PF09577	Sporulation protein YpjB (SpoYpjB)
HHK01_RS08910	PF07187	Protein of unknown function (DUF1405)
HHK01_RS08915	PF13442	Cytochrome C oxidase, cbb3-type, subunit III 
HHK01_RS08915	PF00032	Cytochrome b(C-terminal)/b6/petD
HHK01_RS08920	PF00033	Cytochrome b/b6/petB
HHK01_RS08925	PF00355	Rieske [2Fe-2S] domain
HHK01_RS08930	PF10673	Protein of unknown function (DUF2487)
HHK01_RS08940	PF00403	Heavy-metal-associated domain
HHK01_RS08950	PF00403	Heavy-metal-associated domain
HHK01_RS08960	PF08858	IDEAL domain
HHK01_RS08960	PF08864	UPF0302 domain
HHK01_RS08975	PF01842	ACT domain
HHK01_RS08975	PF02153	Prephenate dehydrogenase
HHK01_RS08980	PF00155	Aminotransferase class I and II
HHK01_RS08985	PF07736	Chorismate mutase type I
HHK01_RS08990	PF01761	3-dehydroquinate synthase
HHK01_RS08995	PF01264	Chorismate synthase
HHK01_RS09000	PF01739	CheR methyltransferase, SAM binding domain
HHK01_RS09000	PF03705	CheR methyltransferase, all-alpha domain
HHK01_RS09005	PF00334	Nucleoside diphosphate kinase
HHK01_RS09010	PF00348	Polyprenyl synthetase
HHK01_RS09015	PF01209	ubiE/COQ5 methyltransferase family
HHK01_RS09020	PF07307	Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
HHK01_RS09025	PF02081	Tryptophan RNA-binding attenuator protein
HHK01_RS09030	PF01227	GTP cyclohydrolase I
HHK01_RS09035	PF00216	Bacterial DNA-binding protein
HHK01_RS09045	PF09547	Stage IV sporulation protein A (spore_IV_A)
HHK01_RS09055	PF10966	Protein of unknown function (DUF2768)
HHK01_RS09060	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
HHK01_RS09060	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
HHK01_RS09065	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
HHK01_RS09065	PF01926	50S ribosome-binding GTPase
HHK01_RS09075	PF14045	YIEGIA protein
HHK01_RS09085	PF14140	YpzI-like protein
HHK01_RS09090	PF01070	FMN-dependent dehydrogenase
HHK01_RS09095	PF00575	S1 RNA binding domain
HHK01_RS09100	PF01553	Acyltransferase
HHK01_RS09105	PF02224	Cytidylate kinase
HHK01_RS09115	PF07238	PilZ domain
HHK01_RS09115	PF12945	Flagellar protein YcgR
HHK01_RS09120	PF14620	YpeB sporulation
HHK01_RS09120	PF03413	Peptidase propeptide and YPEB domain
HHK01_RS09125	PF01471	Putative peptidoglycan binding domain
HHK01_RS09125	PF07486	Cell Wall Hydrolase
HHK01_RS09130	PF13367	PrsW family intramembrane metalloprotease
HHK01_RS09135	PF00710	Asparaginase, N-terminal
HHK01_RS09135	PF17763	Glutaminase/Asparaginase C-terminal domain
HHK01_RS09145	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
HHK01_RS09145	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
HHK01_RS09150	PF05389	Negative regulator of genetic competence (MecA)
HHK01_RS09155	PF00149	Calcineurin-like phosphoesterase
HHK01_RS09160	PF10864	Protein of unknown function (DUF2663)
HHK01_RS09165	PF00270	DEAD/DEAH box helicase
HHK01_RS09165	PF00271	Helicase conserved C-terminal domain
HHK01_RS09170	PF14493	Helix-turn-helix domain
HHK01_RS09190	PF04542	Sigma-70 region 2 
HHK01_RS09190	PF08281	Sigma-70, region 4
HHK01_RS09205	PF00989	PAS fold
HHK01_RS09205	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS09205	PF00672	HAMP domain
HHK01_RS09205	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS09205	PF18698	Histidine kinase sensor domain
HHK01_RS09210	PF00072	Response regulator receiver domain
HHK01_RS09210	PF00486	Transcriptional regulatory protein, C terminal
HHK01_RS09215	PF01578	Cytochrome C assembly protein
HHK01_RS09220	PF05140	ResB-like family 
HHK01_RS09225	PF00578	AhpC/TSA family
HHK01_RS09230	PF00849	RNA pseudouridylate synthase
HHK01_RS09230	PF01479	S4 domain
HHK01_RS09235	PF07670	Nucleoside recognition
HHK01_RS09240	PF07670	Nucleoside recognition
HHK01_RS09245	PF00768	D-alanyl-D-alanine carboxypeptidase
HHK01_RS09245	PF07943	Penicillin-binding protein 5, C-terminal domain
HHK01_RS09250	PF13047	Protein of unknown function (DUF3907)
HHK01_RS09255	PF04079	Segregation and condensation complex subunit ScpB
HHK01_RS09260	PF02616	Segregation and condensation protein ScpA
HHK01_RS09265	PF03745	Domain of unknown function (DUF309)
HHK01_RS09270	PF00583	Acetyltransferase (GNAT) family
HHK01_RS09275	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
HHK01_RS09275	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
HHK01_RS09280	PF03323	Bacillus/Clostridium GerA spore germination protein
HHK01_RS09285	PF14097	Stage V sporulation protein AE1
HHK01_RS09290	PF13782	Stage V sporulation protein AB
HHK01_RS09295	PF12164	Stage V sporulation protein AA
HHK01_RS09300	PF04542	Sigma-70 region 2 
HHK01_RS09300	PF04539	Sigma-70 region 3
HHK01_RS09300	PF04545	Sigma-70, region 4
HHK01_RS09305	PF13581	Histidine kinase-like ATPase domain
HHK01_RS09310	PF01740	STAS domain
HHK01_RS09315	PF00768	D-alanyl-D-alanine carboxypeptidase
HHK01_RS09315	PF07943	Penicillin-binding protein 5, C-terminal domain
HHK01_RS09320	PF00591	Glycosyl transferase family, a/b domain
HHK01_RS09320	PF02885	Glycosyl transferase family, helical bundle domain
HHK01_RS09320	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
HHK01_RS09325	PF01676	Metalloenzyme superfamily
HHK01_RS09335	PF02899	Phage integrase, N-terminal SAM-like domain
HHK01_RS09335	PF00589	Phage integrase family
HHK01_RS09340	PF14004	Protein of unknown function (DUF4227)
HHK01_RS09365	PF01475	Ferric uptake regulator family
HHK01_RS09370	PF01944	Stage II sporulation protein M
HHK01_RS09380	PF00293	NUDIX domain
HHK01_RS09390	PF00248	Aldo/keto reductase family
HHK01_RS09395	PF01144	Coenzyme A transferase
HHK01_RS09400	PF01144	Coenzyme A transferase
HHK01_RS09405	PF00682	HMGL-like
HHK01_RS09410	PF12146	Serine aminopeptidase, S33
HHK01_RS09425	PF07615	YKOF-related Family
HHK01_RS09430	PF09819	ABC-type cobalt transport system, permease component
HHK01_RS09435	PF00005	ABC transporter
HHK01_RS09440	PF02361	Cobalt transport protein
HHK01_RS09445	PF00817	impB/mucB/samB family
HHK01_RS09445	PF11799	impB/mucB/samB family C-terminal domain
HHK01_RS09445	PF11798	IMS family HHH motif
HHK01_RS09460	PF08863	YolD-like protein
HHK01_RS09465	PF11799	impB/mucB/samB family C-terminal domain
HHK01_RS09465	PF00817	impB/mucB/samB family
HHK01_RS09480	PF08863	YolD-like protein
HHK01_RS09485	PF00582	Universal stress protein family
HHK01_RS09495	PF00916	Sulfate permease family
HHK01_RS09495	PF01740	STAS domain
HHK01_RS09515	PF00106	short chain dehydrogenase
HHK01_RS09520	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS09525	PF14748	Pyrroline-5-carboxylate reductase dimerisation
HHK01_RS09525	PF03807	NADP oxidoreductase coenzyme F420-dependent
HHK01_RS09530	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
HHK01_RS09540	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS09540	PF12706	Beta-lactamase superfamily domain
HHK01_RS09545	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
HHK01_RS09545	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
HHK01_RS09550	PF04199	Putative cyclase
HHK01_RS09555	PF00817	impB/mucB/samB family
HHK01_RS09555	PF11799	impB/mucB/samB family C-terminal domain
HHK01_RS09555	PF11798	IMS family HHH motif
HHK01_RS09565	PF01546	Peptidase family M20/M25/M40
HHK01_RS09565	PF07687	Peptidase dimerisation domain
HHK01_RS09570	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS09570	PF00005	ABC transporter
HHK01_RS09575	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS09575	PF00005	ABC transporter
HHK01_RS09580	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS09580	PF12911	N-terminal TM domain of oligopeptide transport permease C
HHK01_RS09585	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS09590	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
HHK01_RS09595	PF07687	Peptidase dimerisation domain
HHK01_RS09595	PF01546	Peptidase family M20/M25/M40
HHK01_RS09600	PF07687	Peptidase dimerisation domain
HHK01_RS09600	PF01546	Peptidase family M20/M25/M40
HHK01_RS09605	PF07687	Peptidase dimerisation domain
HHK01_RS09605	PF01546	Peptidase family M20/M25/M40
HHK01_RS09615	PF01039	Carboxyl transferase domain
HHK01_RS09630	PF03734	L,D-transpeptidase catalytic domain
HHK01_RS09635	PF11728	Putative aromatic acid exporter C-terminal domain
HHK01_RS09635	PF06081	Aromatic acid exporter family member 1
HHK01_RS09640	PF00005	ABC transporter
HHK01_RS09645	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS09650	PF00497	Bacterial extracellular solute-binding proteins, family 3
HHK01_RS09655	PF06491	Disulphide isomerase
HHK01_RS09665	PF02310	B12 binding domain
HHK01_RS09665	PF01642	Methylmalonyl-CoA mutase
HHK01_RS09670	PF01642	Methylmalonyl-CoA mutase
HHK01_RS09675	PF00364	Biotin-requiring enzyme
HHK01_RS09675	PF02817	e3 binding domain
HHK01_RS09675	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
HHK01_RS09680	PF02779	Transketolase, pyrimidine binding domain
HHK01_RS09680	PF02780	Transketolase, C-terminal domain
HHK01_RS09685	PF00676	Dehydrogenase E1 component
HHK01_RS09690	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS09690	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
HHK01_RS09695	PF00871	Acetokinase family
HHK01_RS09700	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
HHK01_RS09700	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
HHK01_RS09705	PF01515	Phosphate acetyl/butaryl transferase
HHK01_RS09710	PF02954	Bacterial regulatory protein, Fis family
HHK01_RS09710	PF00989	PAS fold
HHK01_RS09710	PF00158	Sigma-54 interaction domain
HHK01_RS09715	PF11118	Protein of unknown function (DUF2627)
HHK01_RS09720	PF03009	Glycerophosphoryl diester phosphodiesterase family
HHK01_RS09725	PF00072	Response regulator receiver domain
HHK01_RS09725	PF08769	Sporulation initiation factor Spo0A C terminal
HHK01_RS09730	PF17820	PDZ domain
HHK01_RS09730	PF05580	SpoIVB peptidase S55
HHK01_RS09735	PF13476	AAA domain
HHK01_RS09740	PF02863	Arginine repressor, C-terminal domain
HHK01_RS09740	PF01316	Arginine repressor, DNA binding domain
HHK01_RS09745	PF01728	FtsJ-like methyltransferase
HHK01_RS09745	PF01479	S4 domain
HHK01_RS09750	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
HHK01_RS09750	PF02779	Transketolase, pyrimidine binding domain
HHK01_RS09750	PF02780	Transketolase, C-terminal domain
HHK01_RS09760	PF00348	Polyprenyl synthetase
HHK01_RS09765	PF02609	Exonuclease VII small subunit
HHK01_RS09770	PF02601	Exonuclease VII, large subunit
HHK01_RS09770	PF13742	OB-fold nucleic acid binding domain
HHK01_RS09775	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
HHK01_RS09775	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
HHK01_RS09780	PF01029	NusB family
HHK01_RS09785	PF03780	Asp23 family, cell envelope-related function
HHK01_RS09790	PF02785	Biotin carboxylase C-terminal domain
HHK01_RS09790	PF00289	Biotin carboxylase, N-terminal domain
HHK01_RS09790	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
HHK01_RS09795	PF00364	Biotin-requiring enzyme
HHK01_RS09800	PF12685	SpoIIIAH-like protein
HHK01_RS09810	PF09581	Stage III sporulation protein AF (Spore_III_AF)
HHK01_RS09815	PF09546	Stage III sporulation protein AE (spore_III_AE)
HHK01_RS09820	PF06686	Stage III sporulation protein AC/AD protein family
HHK01_RS09825	PF06686	Stage III sporulation protein AC/AD protein family
HHK01_RS09830	PF09548	Stage III sporulation protein AB (spore_III_AB)
HHK01_RS09840	PF01132	Elongation factor P (EF-P) OB domain
HHK01_RS09840	PF08207	Elongation factor P (EF-P) KOW-like domain
HHK01_RS09840	PF09285	Elongation factor P, C-terminal
HHK01_RS09845	PF01321	Creatinase/Prolidase N-terminal domain
HHK01_RS09845	PF00557	Metallopeptidase family M24
HHK01_RS09850	PF01220	Dehydroquinase class II
HHK01_RS09855	PF11085	Conserved membrane protein YqhR
HHK01_RS09865	PF01734	Patatin-like phospholipase
HHK01_RS09870	PF00258	Flavodoxin
HHK01_RS09875	PF00268	Ribonucleotide reductase, small chain
HHK01_RS09880	PF00317	Ribonucleotide reductase, all-alpha domain
HHK01_RS09880	PF02867	Ribonucleotide reductase, barrel domain
HHK01_RS09880	PF03477	ATP cone domain
HHK01_RS09885	PF03099	Biotin/lipoate A/B protein ligase family
HHK01_RS09890	PF00581	Rhodanese-like domain
HHK01_RS09895	PF02347	Glycine cleavage system P-protein
HHK01_RS09900	PF02347	Glycine cleavage system P-protein
HHK01_RS09905	PF01571	Aminomethyltransferase folate-binding domain
HHK01_RS09905	PF08669	Glycine cleavage T-protein C-terminal barrel domain
HHK01_RS09910	PF00176	SNF2 family N-terminal domain
HHK01_RS09910	PF00271	Helicase conserved C-terminal domain
HHK01_RS09915	PF11079	Bacterial protein YqhG of unknown function
HHK01_RS09920	PF14038	YqzE-like protein
HHK01_RS09925	PF01202	Shikimate kinase
HHK01_RS09950	PF07963	Prokaryotic N-terminal methylation motif
HHK01_RS09960	PF00437	Type II/IV secretion system protein
HHK01_RS09970	PF11117	Protein of unknown function (DUF2626)
HHK01_RS09975	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS09980	PF10958	Protein of unknown function (DUF2759)
HHK01_RS09990	PF01076	Plasmid recombination enzyme
HHK01_RS10015	PF01476	LysM domain
HHK01_RS10015	PF00246	Zinc carboxypeptidase
HHK01_RS10020	PF00884	Sulfatase
HHK01_RS10025	PF00480	ROK family
HHK01_RS10035	PF03323	Bacillus/Clostridium GerA spore germination protein
HHK01_RS10045	PF01694	Rhomboid family
HHK01_RS10055	PF01940	Integral membrane protein DUF92
HHK01_RS10060	PF01812	5-formyltetrahydrofolate cyclo-ligase family
HHK01_RS10065	PF00471	Ribosomal protein L33
HHK01_RS10075	PF13439	Glycosyltransferase Family 4
HHK01_RS10075	PF00534	Glycosyl transferases group 1
HHK01_RS10095	PF01895	PhoU domain
HHK01_RS10100	PF00005	ABC transporter
HHK01_RS10105	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS10110	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS10115	PF12849	PBP superfamily domain
HHK01_RS10120	PF03717	Penicillin-binding Protein dimerisation domain
HHK01_RS10120	PF00905	Penicillin binding protein transpeptidase domain
HHK01_RS10125	PF07690	Major Facilitator Superfamily
HHK01_RS10135	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
HHK01_RS10135	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
HHK01_RS10140	PF04306	Protein of unknown function (DUF456)
HHK01_RS10145	PF02690	Na+/Pi-cotransporter
HHK01_RS10150	PF06691	Protein of unknown function (DUF1189)
HHK01_RS10160	PF04551	GcpE protein
HHK01_RS10175	PF01475	Ferric uptake regulator family
HHK01_RS10180	PF00950	ABC 3 transport family
HHK01_RS10185	PF00005	ABC transporter
HHK01_RS10190	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
HHK01_RS10190	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
HHK01_RS10200	PF01261	Xylose isomerase-like TIM barrel
HHK01_RS10205	PF00271	Helicase conserved C-terminal domain
HHK01_RS10205	PF00270	DEAD/DEAH box helicase
HHK01_RS10215	PF02401	LytB protein
HHK01_RS10220	PF01784	NIF3 (NGG1p interacting factor 3)
HHK01_RS10225	PF04816	tRNA (adenine(22)-N(1))-methyltransferase
HHK01_RS10230	PF13442	Cytochrome C oxidase, cbb3-type, subunit III 
HHK01_RS10235	PF02770	Acyl-CoA dehydrogenase, middle domain
HHK01_RS10235	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
HHK01_RS10235	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
HHK01_RS10240	PF03979	Sigma-70 factor, region 1.1
HHK01_RS10240	PF00140	Sigma-70 factor, region 1.2
HHK01_RS10240	PF04542	Sigma-70 region 2 
HHK01_RS10240	PF04545	Sigma-70, region 4
HHK01_RS10240	PF04539	Sigma-70 region 3
HHK01_RS10245	PF10410	DnaB-helicase binding domain of primase
HHK01_RS10245	PF08275	DNA primase catalytic core, N-terminal domain
HHK01_RS10245	PF01807	CHC2 zinc finger
HHK01_RS10250	PF02639	Uncharacterized BCR, YaiI/YqxD family COG1671
HHK01_RS10255	PF03618	Kinase/pyrophosphorylase
HHK01_RS10260	PF00571	CBS domain
HHK01_RS10260	PF08279	HTH domain
HHK01_RS10265	PF02092	Glycyl-tRNA synthetase beta subunit
HHK01_RS10270	PF02091	Glycyl-tRNA synthetase alpha subunit
HHK01_RS10275	PF02565	Recombination protein O C terminal
HHK01_RS10275	PF11967	Recombination protein O N terminal
HHK01_RS10280	PF14006	YqzL-like protein
HHK01_RS10285	PF07650	KH domain
HHK01_RS10285	PF01926	50S ribosome-binding GTPase
HHK01_RS10290	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
HHK01_RS10295	PF01219	Prokaryotic diacylglycerol kinase
HHK01_RS10300	PF02130	Uncharacterized protein family UPF0054
HHK01_RS10305	PF07698	7TM receptor with intracellular HD hydrolase
HHK01_RS10305	PF07697	7TM-HD extracellular
HHK01_RS10305	PF01966	HD domain
HHK01_RS10310	PF02562	PhoH-like protein
HHK01_RS10315	PF06898	Putative stage IV sporulation protein YqfD
HHK01_RS10320	PF07873	YabP family
HHK01_RS10330	PF12127	SigmaW regulon antibacterial
HHK01_RS10335	PF01957	NfeD-like C-terminal, partner-binding
HHK01_RS10335	PF01972	Serine dehydrogenase proteinase
HHK01_RS10340	PF09424	Yqey-like protein
HHK01_RS10345	PF01165	Ribosomal protein S21
HHK01_RS10350	PF02690	Na+/Pi-cotransporter
HHK01_RS10355	PF01791	DeoC/LacD family aldolase
HHK01_RS10360	PF04055	Radical SAM superfamily
HHK01_RS10360	PF01938	TRAM domain
HHK01_RS10360	PF00919	Uncharacterized protein family UPF0004
HHK01_RS10365	PF04452	RNA methyltransferase
HHK01_RS10375	PF01556	DnaJ C terminal domain
HHK01_RS10375	PF00226	DnaJ domain
HHK01_RS10375	PF00684	DnaJ central domain
HHK01_RS10380	PF00012	Hsp70 protein
HHK01_RS10385	PF01025	GrpE
HHK01_RS10390	PF01628	HrcA protein C terminal domain
HHK01_RS10410	PF06969	HemN C-terminal domain
HHK01_RS10410	PF04055	Radical SAM superfamily
HHK01_RS10415	PF06421	GTP-binding protein LepA C-terminus
HHK01_RS10415	PF03144	Elongation factor Tu domain 2
HHK01_RS10415	PF00009	Elongation factor Tu GTP binding domain
HHK01_RS10415	PF00679	Elongation factor G C-terminus
HHK01_RS10425	PF07454	Stage II sporulation protein P (SpoIIP)
HHK01_RS10430	PF03418	Germination protease
HHK01_RS10435	PF01649	Ribosomal protein S20
HHK01_RS10440	PF06144	DNA polymerase III, delta subunit
HHK01_RS10445	PF14141	YqzM-like protein
HHK01_RS10450	PF03772	Competence protein
HHK01_RS10450	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS10450	PF13567	Domain of unknown function (DUF4131)
HHK01_RS10455	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
HHK01_RS10460	PF10531	SLBB domain
HHK01_RS10465	PF03807	NADP oxidoreductase coenzyme F420-dependent
HHK01_RS10465	PF14748	Pyrroline-5-carboxylate reductase dimerisation
HHK01_RS10470	PF13649	Methyltransferase domain
HHK01_RS10480	PF01966	HD domain
HHK01_RS10485	PF01467	Cytidylyltransferase-like
HHK01_RS10490	PF01985	CRS1 / YhbY (CRM) domain
HHK01_RS10495	PF01488	Shikimate / quinate 5-dehydrogenase
HHK01_RS10495	PF08501	Shikimate dehydrogenase substrate binding domain
HHK01_RS10495	PF18317	Shikimate 5'-dehydrogenase C-terminal domain
HHK01_RS10500	PF01926	50S ribosome-binding GTPase
HHK01_RS10510	PF08970	Sporulation inhibitor A
HHK01_RS10535	PF04542	Sigma-70 region 2 
HHK01_RS10535	PF04545	Sigma-70, region 4
HHK01_RS10550	PF01048	Phosphorylase superfamily
HHK01_RS10560	PF03717	Penicillin-binding Protein dimerisation domain
HHK01_RS10560	PF00905	Penicillin binding protein transpeptidase domain
HHK01_RS10565	PF01272	Transcription elongation factor, GreA/GreB, C-term
HHK01_RS10565	PF03449	Transcription elongation factor, N-terminal
HHK01_RS10570	PF00485	Phosphoribulokinase / Uridine kinase family
HHK01_RS10575	PF01596	O-methyltransferase
HHK01_RS10580	PF02618	YceG-like family
HHK01_RS10585	PF06949	Protein of unknown function (DUF1292)
HHK01_RS10590	PF03652	Holliday junction resolvase
HHK01_RS10595	PF06135	IreB regulatory phosphoprotein
HHK01_RS10600	PF02272	DHHA1 domain
HHK01_RS10600	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
HHK01_RS10600	PF01411	tRNA synthetases class II (A)
HHK01_RS10605	PF01594	AI-2E family transporter
HHK01_RS10615	PF05239	PRC-barrel domain
HHK01_RS10620	PF14490	Helix-hairpin-helix containing domain
HHK01_RS10620	PF18335	ATP-dependent RecD-like DNA helicase SH3 domain
HHK01_RS10620	PF13538	UvrD-like helicase C-terminal domain
HHK01_RS10635	PF00266	Aminotransferase class-V
HHK01_RS10640	PF02082	Transcriptional regulator
HHK01_RS10650	PF16193	AAA C-terminal domain
HHK01_RS10650	PF05496	Holliday junction DNA helicase RuvB P-loop domain
HHK01_RS10650	PF12002	MgsA AAA+ ATPase C terminal
HHK01_RS10655	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
HHK01_RS10655	PF00672	HAMP domain
HHK01_RS10655	PF12729	Four helix bundle sensory module for signal transduction
HHK01_RS10660	PF12679	ABC-2 family transporter protein
HHK01_RS10665	PF00005	ABC transporter
HHK01_RS10675	PF02938	GAD domain
HHK01_RS10675	PF00152	tRNA synthetases class II (D, K and N) 
HHK01_RS10675	PF01336	OB-fold nucleic acid binding domain
HHK01_RS10680	PF03129	Anticodon binding domain
HHK01_RS10680	PF13393	Histidyl-tRNA synthetase
HHK01_RS10690	PF01520	N-acetylmuramoyl-L-alanine amidase
HHK01_RS10690	PF08239	Bacterial SH3 domain
HHK01_RS10695	PF02580	D-Tyr-tRNA(Tyr) deacylase
HHK01_RS10700	PF02824	TGS domain
HHK01_RS10700	PF04607	Region found in RelA / SpoT proteins
HHK01_RS10700	PF13291	ACT domain
HHK01_RS10705	PF00156	Phosphoribosyl transferase domain
HHK01_RS10710	PF01368	DHH family
HHK01_RS10710	PF02272	DHHA1 domain
HHK01_RS10710	PF17768	RecJ OB domain
HHK01_RS10710	PF10141	Single-strand DNA-specific exonuclease, C terminal domain
HHK01_RS10715	PF06305	Lipopolysaccharide assembly protein A domain
HHK01_RS10720	PF07549	SecD/SecF GG Motif
HHK01_RS10720	PF02355	Protein export membrane protein
HHK01_RS10725	PF13797	Post-transcriptional regulator
HHK01_RS10730	PF01943	Polysaccharide biosynthesis protein
HHK01_RS10730	PF14667	Polysaccharide biosynthesis C-terminal domain
HHK01_RS10735	PF04239	Protein of unknown function (DUF421)
HHK01_RS10740	PF12670	Protein of unknown function (DUF3792)
HHK01_RS10745	PF02699	Preprotein translocase subunit
HHK01_RS10750	PF01702	Queuine tRNA-ribosyltransferase
HHK01_RS10755	PF02547	Queuosine biosynthesis protein
HHK01_RS10760	PF11146	Protein of unknown function (DUF2905)
HHK01_RS10765	PF17864	RuvB AAA lid domain
HHK01_RS10765	PF05491	RuvB C-terminal winged helix domain
HHK01_RS10765	PF05496	Holliday junction DNA helicase RuvB P-loop domain
HHK01_RS10770	PF01330	RuvA N terminal domain
HHK01_RS10770	PF07499	RuvA, C-terminal domain
HHK01_RS10775	PF08955	BofC C-terminal domain
HHK01_RS10775	PF08977	Bypass of Forespore C, N terminal
HHK01_RS10785	PF02540	NAD synthase
HHK01_RS10800	PF08279	HTH domain
HHK01_RS10800	PF02829	3H domain
HHK01_RS10805	PF01842	ACT domain
HHK01_RS10805	PF00800	Prephenate dehydratase
HHK01_RS10810	PF01842	ACT domain
HHK01_RS10815	PF09269	Domain of unknown function (DUF1967)
HHK01_RS10815	PF01926	50S ribosome-binding GTPase
HHK01_RS10815	PF01018	GTP1/OBG
HHK01_RS10820	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
HHK01_RS10820	PF14682	Sporulation initiation phospho-transferase B, C-terminal
HHK01_RS10825	PF01016	Ribosomal L27 protein
HHK01_RS10830	PF04327	Cysteine protease Prp
HHK01_RS10835	PF00829	Ribosomal prokaryotic L21 protein
HHK01_RS10840	PF10150	Ribonuclease E/G family
HHK01_RS10840	PF00575	S1 RNA binding domain
HHK01_RS10845	PF02163	Peptidase family M50
HHK01_RS10850	PF01551	Peptidase family M23
HHK01_RS10855	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
HHK01_RS10860	PF03775	Septum formation inhibitor MinC, C-terminal domain
HHK01_RS10865	PF04093	rod shape-determining protein MreD
HHK01_RS10870	PF04085	rod shape-determining protein MreC
HHK01_RS10880	PF04002	RadC-like JAB domain
HHK01_RS10885	PF02545	Maf-like protein
HHK01_RS10910	PF01478	Type IV leader peptidase family
HHK01_RS10910	PF06750	Bacterial Peptidase A24 N-terminal domain
HHK01_RS10915	PF07963	Prokaryotic N-terminal methylation motif
HHK01_RS10915	PF00114	Pilin (bacterial filament)
HHK01_RS10920	PF00482	Type II secretion system (T2SS), protein F
HHK01_RS10925	PF00437	Type II/IV secretion system protein
HHK01_RS10930	PF00437	Type II/IV secretion system protein
HHK01_RS10930	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
HHK01_RS10950	PF00990	Diguanylate cyclase, GGDEF domain
HHK01_RS10950	PF00072	Response regulator receiver domain
HHK01_RS10955	PF02875	Mur ligase family, glutamate ligase domain
HHK01_RS10955	PF08245	Mur ligase middle domain
HHK01_RS10960	PF08264	Anticodon-binding domain of tRNA
HHK01_RS10960	PF00133	tRNA synthetases class I (I, L, M and V)
HHK01_RS10960	PF10458	Valyl tRNA synthetase tRNA binding arm
HHK01_RS10975	PF01476	LysM domain
HHK01_RS10975	PF01476	LysM domain
HHK01_RS10980	PF00202	Aminotransferase class-III
HHK01_RS10985	PF00490	Delta-aminolevulinic acid dehydratase
HHK01_RS10995	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
HHK01_RS10995	PF03900	Porphobilinogen deaminase, C-terminal domain
HHK01_RS11000	PF01578	Cytochrome C assembly protein
HHK01_RS11005	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
HHK01_RS11005	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
HHK01_RS11005	PF01488	Shikimate / quinate 5-dehydrogenase
HHK01_RS11015	PF01926	50S ribosome-binding GTPase
HHK01_RS11020	PF02190	ATP-dependent protease La (LON) substrate-binding domain 
HHK01_RS11020	PF00004	ATPase family associated with various cellular activities (AAA)
HHK01_RS11020	PF05362	Lon protease (S16) C-terminal proteolytic domain
HHK01_RS11025	PF00004	ATPase family associated with various cellular activities (AAA)
HHK01_RS11025	PF05362	Lon protease (S16) C-terminal proteolytic domain
HHK01_RS11030	PF06689	ClpX C4-type zinc finger
HHK01_RS11030	PF07724	AAA domain (Cdc48 subfamily)
HHK01_RS11030	PF10431	C-terminal, D2-small domain, of ClpB protein 
HHK01_RS11035	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
HHK01_RS11035	PF05698	Bacterial trigger factor protein (TF) C-terminus
HHK01_RS11035	PF05697	Bacterial trigger factor protein (TF)
HHK01_RS11055	PF01725	Ham1 family
HHK01_RS11060	PF01138	3' exoribonuclease family, domain 1
HHK01_RS11060	PF03725	3' exoribonuclease family, domain 2
HHK01_RS11065	PF10646	Sporulation and spore germination
HHK01_RS11070	PF01177	Asp/Glu/Hydantoin racemase
HHK01_RS11075	PF01047	MarR family
HHK01_RS11080	PF00196	Bacterial regulatory proteins, luxR family
HHK01_RS11085	PF03061	Thioesterase superfamily
HHK01_RS11090	PF13085	2Fe-2S iron-sulfur cluster binding domain
HHK01_RS11090	PF13183	4Fe-4S dicluster domain
HHK01_RS11095	PF00890	FAD binding domain
HHK01_RS11095	PF02910	Fumarate reductase flavoprotein C-term
HHK01_RS11100	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
HHK01_RS11110	PF00696	Amino acid kinase family
HHK01_RS11110	PF13840	ACT domain 
HHK01_RS11115	PF01541	GIY-YIG catalytic domain
HHK01_RS11115	PF08459	UvrC Helix-hairpin-helix N-terminal
HHK01_RS11115	PF02151	UvrB/uvrC motif
HHK01_RS11120	PF00085	Thioredoxin
HHK01_RS11125	PF01012	Electron transfer flavoprotein domain
HHK01_RS11125	PF00766	Electron transfer flavoprotein FAD-binding domain
HHK01_RS11130	PF01012	Electron transfer flavoprotein domain
HHK01_RS11135	PF00378	Enoyl-CoA hydratase/isomerase
HHK01_RS11140	PF08359	YsiA-like protein, C-terminal region
HHK01_RS11140	PF00440	Bacterial regulatory proteins, tetR family
HHK01_RS11145	PF13193	AMP-binding enzyme C-terminal domain
HHK01_RS11145	PF00501	AMP-binding enzyme
HHK01_RS11150	PF03994	Domain of Unknown Function (DUF350) 
HHK01_RS11155	PF00488	MutS domain V
HHK01_RS11155	PF01713	Smr domain
HHK01_RS11160	PF14791	DNA polymerase beta thumb 
HHK01_RS11160	PF14716	Helix-hairpin-helix domain
HHK01_RS11160	PF02811	PHP domain
HHK01_RS11165	PF02674	Colicin V production protein
HHK01_RS11170	PF05164	Cell division protein ZapA
HHK01_RS11175	PF01351	Ribonuclease HII
HHK01_RS11175	PF11858	Domain of unknown function (DUF3378)
HHK01_RS11180	PF03484	tRNA synthetase B5 domain
HHK01_RS11180	PF03147	Ferredoxin-fold anticodon binding domain
HHK01_RS11180	PF17759	Phenylalanyl tRNA synthetase beta chain CLM domain
HHK01_RS11180	PF03483	B3/4 domain
HHK01_RS11180	PF01588	Putative tRNA binding domain
HHK01_RS11185	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
HHK01_RS11185	PF01409	tRNA synthetases class II core domain (F)
HHK01_RS11190	PF00588	SpoU rRNA Methylase family
HHK01_RS11190	PF08032	RNA 2'-O ribose methyltransferase substrate binding
HHK01_RS11195	PF14098	Small, acid-soluble spore protein I
HHK01_RS11210	PF01381	Helix-turn-helix
HHK01_RS11215	PF05343	M42 glutamyl aminopeptidase
HHK01_RS11225	PF06961	Protein of unknown function (DUF1294)
HHK01_RS11230	PF16326	ABC transporter C-terminal domain
HHK01_RS11230	PF00005	ABC transporter
HHK01_RS11230	PF12848	ABC transporter
HHK01_RS11235	PF00453	Ribosomal protein L20
HHK01_RS11240	PF01632	Ribosomal protein L35
HHK01_RS11245	PF00707	Translation initiation factor IF-3, C-terminal domain
HHK01_RS11245	PF05198	Translation initiation factor IF-3, N-terminal domain
HHK01_RS11250	PF03129	Anticodon binding domain
HHK01_RS11250	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
HHK01_RS11250	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
HHK01_RS11250	PF02824	TGS domain
HHK01_RS11255	PF08812	YtxC-like family
HHK01_RS11260	PF07319	Primosomal protein DnaI N-terminus
HHK01_RS11260	PF01695	IstB-like ATP binding protein
HHK01_RS11265	PF07261	Replication initiation and membrane attachment
HHK01_RS11270	PF03477	ATP cone domain
HHK01_RS11280	PF03807	NADP oxidoreductase coenzyme F420-dependent
HHK01_RS11280	PF14748	Pyrroline-5-carboxylate reductase dimerisation
HHK01_RS11285	PF02675	S-adenosylmethionine decarboxylase 
HHK01_RS11290	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
HHK01_RS11290	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
HHK01_RS11295	PF01121	Dephospho-CoA kinase
HHK01_RS11300	PF02659	Putative manganese efflux pump
HHK01_RS11305	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
HHK01_RS11305	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
HHK01_RS11305	PF06827	Zinc finger found in FPG and IleRS
HHK01_RS11310	PF00476	DNA polymerase family A
HHK01_RS11310	PF01367	5'-3' exonuclease, C-terminal SAM fold
HHK01_RS11310	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
HHK01_RS11315	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS11315	PF00989	PAS fold
HHK01_RS11315	PF16736	Single Cache-like 
HHK01_RS11315	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS11320	PF00072	Response regulator receiver domain
HHK01_RS11320	PF00486	Transcriptional regulatory protein, C terminal
HHK01_RS11330	PF13378	Enolase C-terminal domain-like
HHK01_RS11330	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
HHK01_RS11340	PF03390	2-hydroxycarboxylate transporter family
HHK01_RS11345	PF01609	Transposase DDE domain
HHK01_RS11350	PF03390	2-hydroxycarboxylate transporter family
HHK01_RS11355	PF00180	Isocitrate/isopropylmalate dehydrogenase
HHK01_RS11360	PF00392	Bacterial regulatory proteins, gntR family
HHK01_RS11360	PF07729	FCD domain
HHK01_RS11370	PF00056	lactate/malate dehydrogenase, NAD binding domain
HHK01_RS11370	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
HHK01_RS11375	PF00180	Isocitrate/isopropylmalate dehydrogenase
HHK01_RS11380	PF00285	Citrate synthase, C-terminal domain
HHK01_RS11385	PF04284	Protein of unknown function (DUF441)
HHK01_RS11390	PF01594	AI-2E family transporter
HHK01_RS11395	PF04186	FxsA cytoplasmic membrane protein 
HHK01_RS11400	PF00224	Pyruvate kinase, barrel domain
HHK01_RS11400	PF00391	PEP-utilising enzyme, mobile domain
HHK01_RS11400	PF02887	Pyruvate kinase, alpha/beta domain
HHK01_RS11405	PF00365	Phosphofructokinase
HHK01_RS11410	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
HHK01_RS11415	PF01039	Carboxyl transferase domain
HHK01_RS11415	PF17848	Acetyl-coA carboxylase zinc finger domain
HHK01_RS11420	PF00392	Bacterial regulatory proteins, gntR family
HHK01_RS11425	PF00390	Malic enzyme, N-terminal domain
HHK01_RS11425	PF03949	Malic enzyme, NAD binding domain
HHK01_RS11430	PF01336	OB-fold nucleic acid binding domain
HHK01_RS11430	PF02811	PHP domain
HHK01_RS11430	PF07733	Bacterial DNA polymerase III alpha NTPase domain
HHK01_RS11430	PF14579	Helix-hairpin-helix motif
HHK01_RS11430	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
HHK01_RS11435	PF14034	Sporulation protein YtrH
HHK01_RS11445	PF01368	DHH family
HHK01_RS11445	PF02272	DHHA1 domain
HHK01_RS11455	PF03061	Thioesterase superfamily
HHK01_RS11455	PF00571	CBS domain
HHK01_RS11455	PF07085	DRTGG domain
HHK01_RS11455	PF00392	Bacterial regulatory proteins, gntR family
HHK01_RS11470	PF01321	Creatinase/Prolidase N-terminal domain
HHK01_RS11470	PF00557	Metallopeptidase family M24
HHK01_RS11475	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
HHK01_RS11475	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
HHK01_RS11485	PF00871	Acetokinase family
HHK01_RS11490	PF02384	N-6 DNA Methylase
HHK01_RS11495	PF08534	Redoxin
HHK01_RS11500	PF09579	Sporulation protein YtfJ (Spore_YtfJ)
HHK01_RS11510	PF06271	RDD family
HHK01_RS11515	PF01343	Peptidase family S49
HHK01_RS11520	PF00892	EamA-like transporter family
HHK01_RS11525	PF07969	Amidohydrolase family
HHK01_RS11530	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
HHK01_RS11530	PF00672	HAMP domain
HHK01_RS11530	PF02743	Cache domain
HHK01_RS11535	PF13193	AMP-binding enzyme C-terminal domain
HHK01_RS11535	PF00501	AMP-binding enzyme
HHK01_RS11540	PF00269	Small, acid-soluble spore proteins, alpha/beta type
HHK01_RS11545	PF02926	THUMP domain
HHK01_RS11545	PF02568	Thiamine biosynthesis protein (ThiI)
HHK01_RS11550	PF00266	Aminotransferase class-V
HHK01_RS11555	PF06160	Septation ring formation regulator, EzrA 
HHK01_RS11560	PF02811	PHP domain
HHK01_RS11565	PF00440	Bacterial regulatory proteins, tetR family
HHK01_RS11570	PF13185	GAF domain
HHK01_RS11575	PF00990	Diguanylate cyclase, GGDEF domain
HHK01_RS11580	PF00163	Ribosomal protein S4/S9 N-terminal domain
HHK01_RS11580	PF01479	S4 domain
HHK01_RS11585	PF01479	S4 domain
HHK01_RS11585	PF00579	tRNA synthetases class I (W and Y)
HHK01_RS11590	PF00912	Transglycosylase
HHK01_RS11590	PF00905	Penicillin binding protein transpeptidase domain
HHK01_RS11595	PF00501	AMP-binding enzyme
HHK01_RS11595	PF13193	AMP-binding enzyme C-terminal domain
HHK01_RS11600	PF00583	Acetyltransferase (GNAT) family
HHK01_RS11605	PF00571	CBS domain
HHK01_RS11610	PF00850	Histone deacetylase domain
HHK01_RS11615	PF13677	Membrane MotB of proton-channel complex MotA/MotB 
HHK01_RS11615	PF00691	OmpA family
HHK01_RS11620	PF01618	MotA/TolQ/ExbB proton channel family
HHK01_RS11625	PF00356	Bacterial regulatory proteins, lacI family
HHK01_RS11630	PF01817	Chorismate mutase type II
HHK01_RS11630	PF00793	DAHP synthetase I family
HHK01_RS11635	PF02491	SHS2 domain inserted in FTSA
HHK01_RS11640	PF12732	YtxH-like protein
HHK01_RS11650	PF02073	Thermophilic metalloprotease (M29)
HHK01_RS11655	PF02875	Mur ligase family, glutamate ligase domain
HHK01_RS11655	PF08245	Mur ligase middle domain
HHK01_RS11655	PF01225	Mur ligase family, catalytic domain
HHK01_RS11670	PF01580	FtsK/SpoIIIE family
HHK01_RS11670	PF17854	FtsK alpha domain
HHK01_RS11670	PF09397	Ftsk gamma domain
HHK01_RS11675	PF14794	Domain of unknown function (DUF4479)
HHK01_RS11675	PF01588	Putative tRNA binding domain
HHK01_RS11680	PF07285	Protein of unknown function (DUF1444)
HHK01_RS11685	PF00085	Thioredoxin
HHK01_RS11695	PF02743	Cache domain
HHK01_RS11695	PF00672	HAMP domain
HHK01_RS11695	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
HHK01_RS11705	PF11071	Nucleoside 2-deoxyribosyltransferase YtoQ
HHK01_RS11710	PF01931	Protein of unknown function DUF84
HHK01_RS11715	PF05343	M42 glutamyl aminopeptidase
HHK01_RS11730	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS11735	PF02390	Putative methyltransferase 
HHK01_RS11740	PF14165	YtzH-like protein
HHK01_RS11745	PF01636	Phosphotransferase enzyme family
HHK01_RS11755	PF00291	Pyridoxal-phosphate dependent enzyme
HHK01_RS11770	PF01063	Amino-transferase class IV
HHK01_RS11775	PF01546	Peptidase family M20/M25/M40
HHK01_RS11780	PF08220	DeoR-like helix-turn-helix domain
HHK01_RS11785	PF00849	RNA pseudouridylate synthase
HHK01_RS11785	PF01479	S4 domain
HHK01_RS11790	PF01943	Polysaccharide biosynthesis protein
HHK01_RS11790	PF14667	Polysaccharide biosynthesis C-terminal domain
HHK01_RS11800	PF10957	Sporulation protein Cse60 
HHK01_RS11805	PF00581	Rhodanese-like domain
HHK01_RS11810	PF08264	Anticodon-binding domain of tRNA
HHK01_RS11810	PF00133	tRNA synthetases class I (I, L, M and V)
HHK01_RS11810	PF13603	Leucyl-tRNA synthetase, Domain 2
HHK01_RS11810	PF09334	tRNA synthetases class I (M)
HHK01_RS11820	PF07690	Major Facilitator Superfamily
HHK01_RS11830	PF10732	Protein of unknown function (DUF2524)
HHK01_RS11835	PF04055	Radical SAM superfamily
HHK01_RS11835	PF16199	Radical_SAM C-terminal domain
HHK01_RS11840	PF06962	Putative rRNA methylase
HHK01_RS11845	PF10776	Protein of unknown function (DUF2600)
HHK01_RS11850	PF12146	Serine aminopeptidase, S33
HHK01_RS11855	PF00132	Bacterial transferase hexapeptide (six repeats)
HHK01_RS11865	PF13537	Glutamine amidotransferase domain
HHK01_RS11865	PF00733	Asparagine synthase
HHK01_RS11870	PF02773	S-adenosylmethionine synthetase, C-terminal domain
HHK01_RS11870	PF00438	S-adenosylmethionine synthetase, N-terminal domain
HHK01_RS11870	PF02772	S-adenosylmethionine synthetase, central domain
HHK01_RS11880	PF01293	Phosphoenolpyruvate carboxykinase
HHK01_RS11900	PF00005	ABC transporter
HHK01_RS11905	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS11910	PF13416	Bacterial extracellular solute-binding protein
HHK01_RS11915	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS11920	PF12857	TOBE-like domain
HHK01_RS11920	PF00005	ABC transporter
HHK01_RS11925	PF00367	phosphotransferase system, EIIB
HHK01_RS11925	PF02378	Phosphotransferase system, EIIC 
HHK01_RS11930	PF00293	NUDIX domain
HHK01_RS11955	PF00210	Ferritin-like domain
HHK01_RS11965	PF02664	S-Ribosylhomocysteinase (LuxS)
HHK01_RS11970	PF01809	Putative membrane protein insertion efficiency factor
HHK01_RS11975	PF07561	Domain of Unknown Function (DUF1540)
HHK01_RS11980	PF13378	Enolase C-terminal domain-like
HHK01_RS11980	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
HHK01_RS11985	PF13193	AMP-binding enzyme C-terminal domain
HHK01_RS11985	PF00501	AMP-binding enzyme
HHK01_RS11990	PF00378	Enoyl-CoA hydratase/isomerase
HHK01_RS11995	PF00561	alpha/beta hydrolase fold
HHK01_RS12000	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
HHK01_RS12000	PF16582	Middle domain of thiamine pyrophosphate
HHK01_RS12000	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
HHK01_RS12005	PF00425	chorismate binding enzyme
HHK01_RS12010	PF01040	UbiA prenyltransferase family
HHK01_RS12015	PF01258	Prokaryotic dksA/traR C4-type zinc finger
HHK01_RS12020	PF00343	Carbohydrate phosphorylase
HHK01_RS12025	PF08323	Starch synthase catalytic domain
HHK01_RS12025	PF00534	Glycosyl transferases group 1
HHK01_RS12030	PF00132	Bacterial transferase hexapeptide (six repeats)
HHK01_RS12030	PF00483	Nucleotidyl transferase
HHK01_RS12035	PF00483	Nucleotidyl transferase
HHK01_RS12040	PF00128	Alpha amylase, catalytic domain
HHK01_RS12040	PF02806	Alpha amylase, C-terminal all-beta domain
HHK01_RS12040	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
HHK01_RS12045	PF01925	Sulfite exporter TauE/SafE
HHK01_RS12150	PF00583	Acetyltransferase (GNAT) family
HHK01_RS12155	PF02308	MgtC family
HHK01_RS12165	PF07885	Ion channel
HHK01_RS12165	PF02254	TrkA-N domain
HHK01_RS12170	PF08868	YugN-like family
HHK01_RS12175	PF00342	Phosphoglucose isomerase
HHK01_RS12180	PF00465	Iron-containing alcohol dehydrogenase 
HHK01_RS12185	PF04070	Domain of unknown function (DUF378)
HHK01_RS12190	PF00171	Aldehyde dehydrogenase family
HHK01_RS12195	PF00202	Aminotransferase class-III
HHK01_RS12200	PF00575	S1 RNA binding domain
HHK01_RS12215	PF00080	Copper/zinc superoxide dismutase (SODC)
HHK01_RS12225	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
HHK01_RS12230	PF08810	Kinase associated protein B
HHK01_RS12235	PF07690	Major Facilitator Superfamily
HHK01_RS12245	PF00361	Proton-conducting membrane transporter
HHK01_RS12245	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
HHK01_RS12245	PF13244	Domain of unknown function (DUF4040)
HHK01_RS12250	PF04039	Domain related to MnhB subunit of Na+/H+ antiporter
HHK01_RS12255	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
HHK01_RS12260	PF00361	Proton-conducting membrane transporter
HHK01_RS12265	PF01899	Na+/H+ ion antiporter subunit
HHK01_RS12270	PF04066	Multiple resistance and pH regulation protein F (MrpF / PhaF)
HHK01_RS12275	PF03334	Na+/H+ antiporter subunit
HHK01_RS12280	PF03061	Thioesterase superfamily
HHK01_RS12295	PF00883	Cytosol aminopeptidase family, catalytic domain
HHK01_RS12295	PF02789	Cytosol aminopeptidase family, N-terminal domain
HHK01_RS12300	PF02681	Divergent PAP2 family
HHK01_RS12305	PF06725	3D domain
HHK01_RS12315	PF17302	Family of unknown function (DUF5351)
HHK01_RS12320	PF13344	Haloacid dehalogenase-like hydrolase
HHK01_RS12320	PF00293	NUDIX domain
HHK01_RS12325	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS12330	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS12335	PF01521	Iron-sulphur cluster biosynthesis
HHK01_RS12340	PF07293	Protein of unknown function (DUF1450)
HHK01_RS12345	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS12350	PF07315	Protein of unknown function (DUF1462)
HHK01_RS12360	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
HHK01_RS12360	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
HHK01_RS12370	PF04608	Phosphatidylglycerophosphatase A
HHK01_RS12375	PF13344	Haloacid dehalogenase-like hydrolase
HHK01_RS12380	PF01934	Protein of unknown function DUF86
HHK01_RS12390	PF06265	Protein of unknown function (DUF1027)
HHK01_RS12395	PF09580	Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
HHK01_RS12400	PF16881	N-terminal domain of lipoyl synthase of Radical_SAM family
HHK01_RS12400	PF04055	Radical SAM superfamily
HHK01_RS12405	PF01551	Peptidase family M23
HHK01_RS12415	PF00209	Sodium:neurotransmitter symporter family
HHK01_RS12420	PF03553	Na+/H+ antiporter family
HHK01_RS12425	PF09560	Sporulation protein YunB (Spo_YunB)
HHK01_RS12430	PF08827	Domain of unknown function (DUF1805)
HHK01_RS12435	PF02872	5'-nucleotidase, C-terminal domain
HHK01_RS12440	PF01458	Uncharacterized protein family (UPF0051)
HHK01_RS12445	PF01592	NifU-like N terminal domain
HHK01_RS12450	PF00266	Aminotransferase class-V
HHK01_RS12455	PF01458	Uncharacterized protein family (UPF0051)
HHK01_RS12460	PF00005	ABC transporter
HHK01_RS12470	PF03180	NLPA lipoprotein
HHK01_RS12475	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS12480	PF00005	ABC transporter
HHK01_RS12480	PF09383	NIL domain
HHK01_RS12490	PF00005	ABC transporter
HHK01_RS12495	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS12500	PF09084	NMT1/THI5 like
HHK01_RS12505	PF00085	Thioredoxin
HHK01_RS12515	PF01597	Glycine cleavage H-protein
HHK01_RS12520	PF03960	ArsC family
HHK01_RS12525	PF02770	Acyl-CoA dehydrogenase, middle domain
HHK01_RS12525	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
HHK01_RS12525	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
HHK01_RS12530	PF02803	Thiolase, C-terminal domain
HHK01_RS12530	PF00108	Thiolase, N-terminal domain
HHK01_RS12535	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
HHK01_RS12535	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
HHK01_RS12535	PF00378	Enoyl-CoA hydratase/isomerase
HHK01_RS12540	PF14115	YuzL-like protein
HHK01_RS12545	PF01619	Proline dehydrogenase
HHK01_RS12550	PF10835	Protein of unknown function (DUF2573)
HHK01_RS12560	PF00005	ABC transporter
HHK01_RS12565	PF03323	Bacillus/Clostridium GerA spore germination protein
HHK01_RS12570	PF03845	Spore germination protein
HHK01_RS12575	PF00005	ABC transporter
HHK01_RS12580	PF01032	FecCD transport family
HHK01_RS12585	PF01032	FecCD transport family
HHK01_RS12590	PF03060	Nitronate monooxygenase
HHK01_RS12595	PF06207	Protein of unknown function (DUF1002)
HHK01_RS12605	PF13538	UvrD-like helicase C-terminal domain
HHK01_RS12610	PF04461	Protein of unknown function (DUF520)
HHK01_RS12615	PF02694	Uncharacterised BCR, YnfA/UPF0060 family
HHK01_RS12620	PF12848	ABC transporter
HHK01_RS12620	PF00005	ABC transporter
HHK01_RS12630	PF00171	Aldehyde dehydrogenase family
HHK01_RS12635	PF01451	Low molecular weight phosphotyrosine protein phosphatase
HHK01_RS12640	PF02040	Arsenical pump membrane protein
HHK01_RS12645	PF01022	Bacterial regulatory protein, arsR family
HHK01_RS12650	PF00893	Small Multidrug Resistance protein
HHK01_RS12655	PF00893	Small Multidrug Resistance protein
HHK01_RS12660	PF08780	Nucleotidyltransferase substrate binding protein like
HHK01_RS12675	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
HHK01_RS12675	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
HHK01_RS12695	PF00072	Response regulator receiver domain
HHK01_RS12705	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS12715	PF02597	ThiS family
HHK01_RS12720	PF02391	MoaE protein
HHK01_RS12725	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
HHK01_RS12730	PF03454	MoeA C-terminal region (domain IV)
HHK01_RS12730	PF00994	Probable molybdopterin binding domain
HHK01_RS12730	PF03453	MoeA N-terminal region (domain I and II)
HHK01_RS12735	PF00899	ThiF family
HHK01_RS12740	PF00994	Probable molybdopterin binding domain
HHK01_RS12745	PF12804	MobA-like NTP transferase domain
HHK01_RS12750	PF01967	MoaC family
HHK01_RS12755	PF01226	Formate/nitrite transporter
HHK01_RS12760	PF06463	Molybdenum Cofactor Synthesis C
HHK01_RS12760	PF04055	Radical SAM superfamily
HHK01_RS12765	PF02634	FdhD/NarQ family
HHK01_RS12770	PF10057	Uncharacterized conserved protein (DUF2294)
HHK01_RS12775	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
HHK01_RS12775	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
HHK01_RS12775	PF01568	Molydopterin dinucleotide binding domain
HHK01_RS12775	PF00384	Molybdopterin oxidoreductase
HHK01_RS12775	PF00037	4Fe-4S binding domain
HHK01_RS12780	PF07849	Protein of unknown function (DUF1641)
HHK01_RS12785	PF10609	NUBPL iron-transfer P-loop NTPase
HHK01_RS12805	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
HHK01_RS12805	PF12838	4Fe-4S dicluster domain
HHK01_RS12805	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
HHK01_RS12805	PF00384	Molybdopterin oxidoreductase
HHK01_RS12805	PF01568	Molydopterin dinucleotide binding domain
HHK01_RS12810	PF01226	Formate/nitrite transporter
HHK01_RS12820	PF08546	Ketopantoate reductase PanE/ApbA C terminal
HHK01_RS12820	PF02558	Ketopantoate reductase PanE/ApbA
HHK01_RS12825	PF02554	Carbon starvation protein CstA
HHK01_RS12830	PF00072	Response regulator receiver domain
HHK01_RS12830	PF04397	LytTr DNA-binding domain
HHK01_RS12835	PF13492	GAF domain
HHK01_RS12835	PF07694	5TMR of 5TMR-LYT
HHK01_RS12835	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS12835	PF06580	Histidine kinase
HHK01_RS12840	PF00205	Thiamine pyrophosphate enzyme, central domain
HHK01_RS12840	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
HHK01_RS12840	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
HHK01_RS12855	PF01668	SmpB protein
HHK01_RS12860	PF00575	S1 RNA binding domain
HHK01_RS12860	PF00773	RNB domain
HHK01_RS12860	PF17876	Cold shock domain
HHK01_RS12860	PF08206	Ribonuclease B OB domain
HHK01_RS12865	PF12146	Serine aminopeptidase, S33
HHK01_RS12870	PF03840	Preprotein translocase SecG subunit
HHK01_RS12875	PF03952	Enolase, N-terminal domain
HHK01_RS12875	PF00113	Enolase, C-terminal TIM barrel domain
HHK01_RS12880	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
HHK01_RS12880	PF01676	Metalloenzyme superfamily
HHK01_RS12885	PF00121	Triosephosphate isomerase
HHK01_RS12890	PF00162	Phosphoglycerate kinase
HHK01_RS12895	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
HHK01_RS12895	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
HHK01_RS12900	PF04198	Putative sugar-binding domain
HHK01_RS12910	PF00309	Sigma-54 factor, Activator interacting domain (AID) 
HHK01_RS12910	PF04963	Sigma-54 factor, core binding domain
HHK01_RS12910	PF04552	Sigma-54, DNA binding domain
HHK01_RS12920	PF00574	Clp protease
HHK01_RS12925	PF00381	PTS HPr component phosphorylation site
HHK01_RS12930	PF02650	WhiA C-terminal HTH domain
HHK01_RS12930	PF10298	WhiA N-terminal LAGLIDADG-like domain
HHK01_RS12930	PF14527	WhiA LAGLIDADG-like domain
HHK01_RS12935	PF01933	Uncharacterised protein family UPF0052
HHK01_RS12940	PF03668	P-loop ATPase protein family
HHK01_RS12945	PF00293	NUDIX domain
HHK01_RS12950	PF07992	Pyridine nucleotide-disulphide oxidoreductase
HHK01_RS12960	PF02557	D-alanyl-D-alanine carboxypeptidase
HHK01_RS12965	PF01502	Phosphoribosyl-AMP cyclohydrolase
HHK01_RS12965	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
HHK01_RS12970	PF00977	Histidine biosynthesis protein
HHK01_RS12975	PF00977	Histidine biosynthesis protein
HHK01_RS12980	PF00117	Glutamine amidotransferase class-I
HHK01_RS12985	PF00475	Imidazoleglycerol-phosphate dehydratase
HHK01_RS12990	PF00815	Histidinol dehydrogenase
HHK01_RS12995	PF01634	ATP phosphoribosyltransferase
HHK01_RS13000	PF13393	Histidyl-tRNA synthetase
HHK01_RS13005	PF14602	Hexapeptide repeat of succinyl-transferase
HHK01_RS13010	PF13419	Haloacid dehalogenase-like hydrolase
HHK01_RS13015	PF07670	Nucleoside recognition
HHK01_RS13020	PF01790	Prolipoprotein diacylglyceryl transferase
HHK01_RS13025	PF07475	HPr Serine kinase C-terminal domain
HHK01_RS13025	PF02603	HPr Serine kinase N terminus
HHK01_RS13030	PF01979	Amidohydrolase family
HHK01_RS13035	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
HHK01_RS13045	PF13349	Putative adhesin
HHK01_RS13055	PF00005	ABC transporter
HHK01_RS13055	PF17755	UvrA DNA-binding domain
HHK01_RS13055	PF17760	UvrA interaction domain
HHK01_RS13060	PF02151	UvrB/uvrC motif
HHK01_RS13060	PF04851	Type III restriction enzyme, res subunit
HHK01_RS13060	PF17757	UvrB interaction domain
HHK01_RS13060	PF12344	Ultra-violet resistance protein B
HHK01_RS13060	PF00271	Helicase conserved C-terminal domain
HHK01_RS13065	PF09964	Uncharacterized protein conserved in bacteria (DUF2198)
HHK01_RS13070	PF17820	PDZ domain
HHK01_RS13075	PF13302	Acetyltransferase (GNAT) domain
HHK01_RS13080	PF01471	Putative peptidoglycan binding domain
HHK01_RS13080	PF03572	Peptidase family S41
HHK01_RS13080	PF17820	PDZ domain
HHK01_RS13085	PF01842	ACT domain
HHK01_RS13085	PF00742	Homoserine dehydrogenase
HHK01_RS13085	PF03447	Homoserine dehydrogenase, NAD binding domain
HHK01_RS13090	PF00561	alpha/beta hydrolase fold
HHK01_RS13095	PF00501	AMP-binding enzyme
HHK01_RS13095	PF13193	AMP-binding enzyme C-terminal domain
HHK01_RS13100	PF00005	ABC transporter
HHK01_RS13105	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS13115	PF01053	Cys/Met metabolism PLP-dependent enzyme
HHK01_RS13120	PF01053	Cys/Met metabolism PLP-dependent enzyme
HHK01_RS13125	PF00877	NlpC/P60 family
HHK01_RS13130	PF02687	FtsX-like permease family
HHK01_RS13130	PF18075	FtsX extracellular domain
HHK01_RS13135	PF00005	ABC transporter
HHK01_RS13140	PF13442	Cytochrome C oxidase, cbb3-type, subunit III 
HHK01_RS13150	PF02810	SEC-C motif
HHK01_RS13150	PF07517	SecA DEAD-like domain
HHK01_RS13150	PF01043	SecA preprotein cross-linking domain
HHK01_RS13150	PF07516	SecA Wing and Scaffold domain
HHK01_RS13160	PF02417	Chromate transporter
HHK01_RS13165	PF02417	Chromate transporter
HHK01_RS13175	PF00005	ABC transporter
HHK01_RS13175	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS13180	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
HHK01_RS13180	PF00005	ABC transporter
HHK01_RS13185	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
HHK01_RS13190	PF12911	N-terminal TM domain of oligopeptide transport permease C
HHK01_RS13190	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS13195	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS13200	PF01037	Lrp/AsnC ligand binding domain
HHK01_RS13200	PF13404	AsnC-type helix-turn-helix domain
HHK01_RS13205	PF16321	Sigma 54 modulation/S30EA ribosomal protein C terminus
HHK01_RS13205	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
HHK01_RS13215	PF02561	Flagellar protein FliS
HHK01_RS13220	PF02465	Flagellar hook-associated protein 2 N-terminus
HHK01_RS13220	PF07196	Flagellin hook IN motif
HHK01_RS13220	PF07195	Flagellar hook-associated protein 2 C-terminus
HHK01_RS13235	PF00042	Globin
HHK01_RS13235	PF00175	Oxidoreductase NAD-binding domain 
HHK01_RS13235	PF00970	Oxidoreductase FAD-binding domain
HHK01_RS13240	PF02082	Transcriptional regulator
HHK01_RS13250	PF13580	SIS domain
HHK01_RS13260	PF02126	Phosphotriesterase family
HHK01_RS13265	PF03611	PTS system sugar-specific permease component
HHK01_RS13275	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
HHK01_RS13280	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
HHK01_RS13300	PF03176	MMPL family
HHK01_RS13315	PF00700	Bacterial flagellin C-terminal helical region
HHK01_RS13315	PF00669	Bacterial flagellin N-terminal helical region
HHK01_RS13320	PF02599	Global regulator protein family
HHK01_RS13325	PF02623	FliW protein
HHK01_RS13335	PF00700	Bacterial flagellin C-terminal helical region
HHK01_RS13335	PF00669	Bacterial flagellin N-terminal helical region
HHK01_RS13340	PF00460	Flagella basal body rod protein
HHK01_RS13340	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
HHK01_RS13350	PF04316	Anti-sigma-28 factor, FlgM
HHK01_RS13375	PF00271	Helicase conserved C-terminal domain
HHK01_RS13375	PF04851	Type III restriction enzyme, res subunit
HHK01_RS13380	PF02645	Uncharacterised protein, DegV family COG1307
HHK01_RS13385	PF00196	Bacterial regulatory proteins, luxR family
HHK01_RS13385	PF00072	Response regulator receiver domain
HHK01_RS13390	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS13390	PF07730	Histidine kinase
HHK01_RS13390	PF05384	Sensor protein DegS
HHK01_RS13395	PF09186	Domain of unknown function (DUF1949)
HHK01_RS13395	PF01205	Uncharacterized protein family UPF0029
HHK01_RS13400	PF03816	Cell envelope-related transcriptional attenuator domain
HHK01_RS13405	PF03816	Cell envelope-related transcriptional attenuator domain
HHK01_RS13410	PF00953	Glycosyl transferase family 4
HHK01_RS13415	PF01043	SecA preprotein cross-linking domain
HHK01_RS13415	PF07516	SecA Wing and Scaffold domain
HHK01_RS13415	PF07517	SecA DEAD-like domain
HHK01_RS13430	PF02872	5'-nucleotidase, C-terminal domain
HHK01_RS13430	PF00746	LPXTG cell wall anchor motif
HHK01_RS13430	PF00149	Calcineurin-like phosphoesterase
HHK01_RS13430	PF00565	Staphylococcal nuclease homologue
HHK01_RS13440	PF03698	Uncharacterised protein family (UPF0180)
HHK01_RS13450	PF00395	S-layer homology domain
HHK01_RS13450	PF02368	Bacterial Ig-like domain (group 2)
HHK01_RS13465	PF00990	Diguanylate cyclase, GGDEF domain
HHK01_RS13465	PF00563	EAL domain
HHK01_RS13465	PF03707	Bacterial signalling protein N terminal repeat
HHK01_RS13470	PF13407	Periplasmic binding protein domain
HHK01_RS13475	PF02653	Branched-chain amino acid transport system / permease component
HHK01_RS13480	PF00005	ABC transporter
HHK01_RS13485	PF05025	RbsD / FucU transport protein family
HHK01_RS13490	PF00294	pfkB family carbohydrate kinase
HHK01_RS13495	PF00356	Bacterial regulatory proteins, lacI family
HHK01_RS13505	PF00672	HAMP domain
HHK01_RS13505	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
HHK01_RS13505	PF12729	Four helix bundle sensory module for signal transduction
HHK01_RS13510	PF00072	Response regulator receiver domain
HHK01_RS13525	PF00266	Aminotransferase class-V
HHK01_RS13540	PF01979	Amidohydrolase family
HHK01_RS13545	PF00291	Pyridoxal-phosphate dependent enzyme
HHK01_RS13545	PF13291	ACT domain
HHK01_RS13560	PF00395	S-layer homology domain
HHK01_RS13570	PF00534	Glycosyl transferases group 1
HHK01_RS13570	PF13439	Glycosyltransferase Family 4
HHK01_RS13575	PF02585	GlcNAc-PI de-N-acetylase
HHK01_RS13585	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
HHK01_RS13585	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
HHK01_RS13585	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
HHK01_RS13595	PF00534	Glycosyl transferases group 1
HHK01_RS13600	PF03023	Lipid II flippase MurJ
HHK01_RS13610	PF06452	Carbohydrate family 9 binding domain-like
HHK01_RS13610	PF02018	Carbohydrate binding domain
HHK01_RS13610	PF00395	S-layer homology domain
HHK01_RS13610	PF00331	Glycosyl hydrolase family 10
HHK01_RS13615	PF00082	Subtilase family
HHK01_RS13620	PF00877	NlpC/P60 family
HHK01_RS13625	PF00082	Subtilase family
HHK01_RS13630	PF01520	N-acetylmuramoyl-L-alanine amidase
HHK01_RS13630	PF00395	S-layer homology domain
HHK01_RS13640	PF03808	Glycosyl transferase WecB/TagA/CpsF family
HHK01_RS13655	PF00245	Alkaline phosphatase
HHK01_RS13670	PF00271	Helicase conserved C-terminal domain
HHK01_RS13670	PF12419	SNF2 Helicase protein 
HHK01_RS13670	PF00176	SNF2 family N-terminal domain
HHK01_RS13685	PF00436	Single-strand binding protein family
HHK01_RS13695	PF01979	Amidohydrolase family
HHK01_RS13710	PF00082	Subtilase family
HHK01_RS13710	PF02225	PA domain
HHK01_RS13710	PF06280	Fn3-like domain
HHK01_RS13710	PF00746	LPXTG cell wall anchor motif
HHK01_RS13720	PF00570	HRDC domain
HHK01_RS13720	PF09382	RQC domain
HHK01_RS13720	PF00270	DEAD/DEAH box helicase
HHK01_RS13720	PF00271	Helicase conserved C-terminal domain
HHK01_RS13720	PF16124	RecQ zinc-binding
HHK01_RS13725	PF01557	Fumarylacetoacetate (FAA) hydrolase family
HHK01_RS13735	PF00497	Bacterial extracellular solute-binding proteins, family 3
HHK01_RS13740	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS13745	PF00005	ABC transporter
HHK01_RS13750	PF07670	Nucleoside recognition
HHK01_RS13760	PF14489	QueF-like protein
HHK01_RS13765	PF04055	Radical SAM superfamily
HHK01_RS13770	PF01242	6-pyruvoyl tetrahydropterin synthase
HHK01_RS13775	PF06508	Queuosine biosynthesis protein QueC
HHK01_RS13780	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
HHK01_RS13785	PF01738	Dienelactone hydrolase family
HHK01_RS13795	PF00501	AMP-binding enzyme
HHK01_RS13795	PF13193	AMP-binding enzyme C-terminal domain
HHK01_RS13800	PF13649	Methyltransferase domain
HHK01_RS13805	PF00291	Pyridoxal-phosphate dependent enzyme
HHK01_RS13810	PF01053	Cys/Met metabolism PLP-dependent enzyme
HHK01_RS13815	PF04231	Endonuclease I
HHK01_RS13825	PF00565	Staphylococcal nuclease homologue
HHK01_RS13825	PF00149	Calcineurin-like phosphoesterase
HHK01_RS13825	PF02872	5'-nucleotidase, C-terminal domain
HHK01_RS13825	PF00746	LPXTG cell wall anchor motif
HHK01_RS13830	PF05343	M42 glutamyl aminopeptidase
HHK01_RS13840	PF03060	Nitronate monooxygenase
HHK01_RS13855	PF07977	FabA-like domain
HHK01_RS13865	PF00460	Flagella basal body rod protein
HHK01_RS13865	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
HHK01_RS13870	PF00460	Flagella basal body rod protein
HHK01_RS13870	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
HHK01_RS13875	PF00009	Elongation factor Tu GTP binding domain
HHK01_RS13875	PF03144	Elongation factor Tu domain 2
HHK01_RS13875	PF16658	Class II release factor RF3, C-terminal domain
HHK01_RS13880	PF01943	Polysaccharide biosynthesis protein
HHK01_RS13890	PF12116	Stage III sporulation protein D
HHK01_RS13910	PF00474	Sodium:solute symporter family
HHK01_RS13920	PF01470	Pyroglutamyl peptidase
HHK01_RS13925	PF02630	SCO1/SenC
HHK01_RS13930	PF01551	Peptidase family M23
HHK01_RS13935	PF08486	Stage II sporulation protein
HHK01_RS13940	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
HHK01_RS13945	PF06612	Protein of unknown function (DUF1146)
HHK01_RS13955	PF00578	AhpC/TSA family
HHK01_RS13960	PF00005	ABC transporter
HHK01_RS13975	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
HHK01_RS13975	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
HHK01_RS13980	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
HHK01_RS13980	PF02874	ATP synthase alpha/beta family, beta-barrel domain
HHK01_RS13985	PF00231	ATP synthase
HHK01_RS13990	PF00306	ATP synthase alpha/beta chain, C terminal domain
HHK01_RS13990	PF02874	ATP synthase alpha/beta family, beta-barrel domain
HHK01_RS13990	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
HHK01_RS13995	PF00213	ATP synthase delta (OSCP) subunit
HHK01_RS14000	PF00430	ATP synthase B/B' CF(0)
HHK01_RS14005	PF00137	ATP synthase subunit C
HHK01_RS14010	PF00119	ATP synthase A chain
HHK01_RS14015	PF03899	ATP synthase I chain
HHK01_RS14035	PF02350	UDP-N-acetylglucosamine 2-epimerase
HHK01_RS14045	PF01297	Zinc-uptake complex component A periplasmic
HHK01_RS14055	PF00464	Serine hydroxymethyltransferase
HHK01_RS14060	PF04055	Radical SAM superfamily
HHK01_RS14065	PF00375	Sodium:dicarboxylate symporter family
HHK01_RS14070	PF07690	Major Facilitator Superfamily
HHK01_RS14075	PF04260	Protein of unknown function (DUF436) 
HHK01_RS14080	PF02502	Ribose/Galactose Isomerase
HHK01_RS14085	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
HHK01_RS14085	PF08447	PAS fold
HHK01_RS14085	PF13426	PAS domain
HHK01_RS14090	PF01451	Low molecular weight phosphotyrosine protein phosphatase
HHK01_RS14095	PF02659	Putative manganese efflux pump
HHK01_RS14100	PF01300	Telomere recombination
HHK01_RS14100	PF03481	Putative GTP-binding controlling metal-binding
HHK01_RS14110	PF01545	Cation efflux family
HHK01_RS14110	PF16916	Dimerisation domain of Zinc Transporter
HHK01_RS14115	PF09551	Stage II sporulation protein R (spore_II_R)
HHK01_RS14125	PF01618	MotA/TolQ/ExbB proton channel family
HHK01_RS14130	PF13677	Membrane MotB of proton-channel complex MotA/MotB 
HHK01_RS14130	PF00691	OmpA family
HHK01_RS14140	PF00574	Clp protease
HHK01_RS14145	PF04542	Sigma-70 region 2 
HHK01_RS14145	PF08281	Sigma-70, region 4
HHK01_RS14150	PF05175	Methyltransferase small domain
HHK01_RS14150	PF17827	PrmC N-terminal domain
HHK01_RS14155	PF03462	PCRF domain
HHK01_RS14155	PF00472	RF-1 domain
HHK01_RS14165	PF00265	Thymidine kinase
HHK01_RS14170	PF01197	Ribosomal protein L31
HHK01_RS14175	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
HHK01_RS14175	PF07498	Rho termination factor, N-terminal domain
HHK01_RS14175	PF07497	Rho termination factor, RNA-binding domain
HHK01_RS14180	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
HHK01_RS14185	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
HHK01_RS14190	PF00923	Transaldolase/Fructose-6-phosphate aldolase
HHK01_RS14195	PF01116	Fructose-bisphosphate aldolase class-II
HHK01_RS14200	PF00072	Response regulator receiver domain
HHK01_RS14210	PF06418	CTP synthase N-terminus
HHK01_RS14210	PF00117	Glutamine amidotransferase class-I
HHK01_RS14215	PF05066	HB1, ASXL, restriction endonuclease HTH domain
HHK01_RS14225	PF02310	B12 binding domain
HHK01_RS14225	PF01642	Methylmalonyl-CoA mutase
HHK01_RS14230	PF08359	YsiA-like protein, C-terminal region
HHK01_RS14230	PF00440	Bacterial regulatory proteins, tetR family
HHK01_RS14235	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
HHK01_RS14235	PF02770	Acyl-CoA dehydrogenase, middle domain
HHK01_RS14235	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
HHK01_RS14240	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
HHK01_RS14240	PF02770	Acyl-CoA dehydrogenase, middle domain
HHK01_RS14240	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
HHK01_RS14245	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
HHK01_RS14245	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
HHK01_RS14250	PF00108	Thiolase, N-terminal domain
HHK01_RS14250	PF02803	Thiolase, C-terminal domain
HHK01_RS14255	PF02754	Cysteine-rich domain
HHK01_RS14255	PF13183	4Fe-4S dicluster domain
HHK01_RS14260	PF13091	PLD-like domain
HHK01_RS14270	PF05746	DALR anticodon binding domain
HHK01_RS14270	PF00750	tRNA synthetases class I (R)
HHK01_RS14270	PF03485	Arginyl tRNA synthetase N terminal domain
HHK01_RS14285	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
HHK01_RS14285	PF01568	Molydopterin dinucleotide binding domain
HHK01_RS14285	PF00384	Molybdopterin oxidoreductase
HHK01_RS14295	PF00491	Arginase family
HHK01_RS14300	PF17284	Spermidine synthase tetramerisation domain
HHK01_RS14305	PF00912	Transglycosylase
HHK01_RS14305	PF00905	Penicillin binding protein transpeptidase domain
HHK01_RS14310	PF08741	YwhD family
HHK01_RS14315	PF02833	DHHA2 domain
HHK01_RS14315	PF01368	DHH family
HHK01_RS14325	PF01966	HD domain
HHK01_RS14335	PF03099	Biotin/lipoate A/B protein ligase family
HHK01_RS14340	PF01515	Phosphate acetyl/butaryl transferase
HHK01_RS14345	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
HHK01_RS14345	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
HHK01_RS14350	PF00171	Aldehyde dehydrogenase family
HHK01_RS14360	PF00465	Iron-containing alcohol dehydrogenase 
HHK01_RS14365	PF00989	PAS fold
HHK01_RS14365	PF02954	Bacterial regulatory protein, Fis family
HHK01_RS14365	PF00158	Sigma-54 interaction domain
HHK01_RS14370	PF06778	Chlorite dismutase
HHK01_RS14375	PF07486	Cell Wall Hydrolase
HHK01_RS14385	PF04241	Protein of unknown function (DUF423)
HHK01_RS14395	PF03167	Uracil DNA glycosylase superfamily
HHK01_RS14415	PF00005	ABC transporter
HHK01_RS14425	PF00486	Transcriptional regulatory protein, C terminal
HHK01_RS14425	PF00072	Response regulator receiver domain
HHK01_RS14430	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS14430	PF00672	HAMP domain
HHK01_RS14440	PF08830	Protein of unknown function (DUF1806)
HHK01_RS14445	PF02585	GlcNAc-PI de-N-acetylase
HHK01_RS14460	PF00392	Bacterial regulatory proteins, gntR family
HHK01_RS14460	PF07702	UTRA domain
HHK01_RS14475	PF03466	LysR substrate binding domain
HHK01_RS14475	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
HHK01_RS14480	PF00285	Citrate synthase, C-terminal domain
HHK01_RS14495	PF02028	BCCT, betaine/carnitine/choline family transporter
HHK01_RS14505	PF00005	ABC transporter
HHK01_RS14505	PF00571	CBS domain
HHK01_RS14510	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS14525	PF02028	BCCT, betaine/carnitine/choline family transporter
HHK01_RS14535	PF02449	Beta-galactosidase
HHK01_RS14535	PF08533	Beta-galactosidase C-terminal domain
HHK01_RS14535	PF08532	Beta-galactosidase trimerisation domain
HHK01_RS14540	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS14545	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS14550	PF13416	Bacterial extracellular solute-binding protein
HHK01_RS14555	PF00356	Bacterial regulatory proteins, lacI family
HHK01_RS14560	PF00288	GHMP kinases N terminal domain
HHK01_RS14560	PF08544	GHMP kinases C terminal 
HHK01_RS14560	PF10509	Galactokinase galactose-binding signature
HHK01_RS14565	PF16363	GDP-mannose 4,6 dehydratase
HHK01_RS14570	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
HHK01_RS14570	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
HHK01_RS14575	PF01263	Aldose 1-epimerase
HHK01_RS14580	PF01047	MarR family
HHK01_RS14580	PF00480	ROK family
HHK01_RS14595	PF12823	Domain of unknown function (DUF3817)
HHK01_RS14605	PF02567	Phenazine biosynthesis-like protein
HHK01_RS14610	PF01476	LysM domain
HHK01_RS14610	PF00704	Glycosyl hydrolases family 18
HHK01_RS14625	PF00480	ROK family
HHK01_RS14630	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
HHK01_RS14630	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
HHK01_RS14640	PF00232	Glycosyl hydrolase family 1
HHK01_RS14660	PF00005	ABC transporter
HHK01_RS14660	PF16326	ABC transporter C-terminal domain
HHK01_RS14660	PF12848	ABC transporter
HHK01_RS14665	PF00300	Histidine phosphatase superfamily (branch 1)
HHK01_RS14675	PF00561	alpha/beta hydrolase fold
HHK01_RS14680	PF01593	Flavin containing amine oxidoreductase
HHK01_RS14690	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
HHK01_RS14690	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
HHK01_RS14695	PF02447	GntP family permease
HHK01_RS14700	PF01418	Helix-turn-helix domain, rpiR family
HHK01_RS14700	PF01380	SIS domain
HHK01_RS14715	PF02632	BioY family
HHK01_RS14720	PF02660	Glycerol-3-phosphate acyltransferase
HHK01_RS14735	PF08281	Sigma-70, region 4
HHK01_RS14735	PF04542	Sigma-70 region 2 
HHK01_RS14780	PF05675	Protein of unknown function (DUF817)
HHK01_RS14790	PF13443	Cro/C1-type HTH DNA-binding domain
HHK01_RS14795	PF11188	Protein of unknown function (DUF2975)
HHK01_RS14810	PF11975	Family 4 glycosyl hydrolase C-terminal domain
HHK01_RS14810	PF02056	Family 4 glycosyl hydrolase
HHK01_RS14820	PF08447	PAS fold
HHK01_RS14820	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS14820	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS14820	PF00989	PAS fold
HHK01_RS14840	PF00873	AcrB/AcrD/AcrF family
HHK01_RS14845	PF00440	Bacterial regulatory proteins, tetR family
HHK01_RS14860	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
HHK01_RS14860	PF12793	Sugar transport-related sRNA regulator N-term
HHK01_RS14870	PF01235	Sodium:alanine symporter family
HHK01_RS14875	PF03576	Peptidase family S58 
HHK01_RS14885	PF00082	Subtilase family
HHK01_RS14890	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS14890	PF00989	PAS fold
HHK01_RS14890	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS14890	PF00672	HAMP domain
HHK01_RS14890	PF18698	Histidine kinase sensor domain
HHK01_RS14895	PF01546	Peptidase family M20/M25/M40
HHK01_RS14895	PF07687	Peptidase dimerisation domain
HHK01_RS14905	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS14910	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS14915	PF13416	Bacterial extracellular solute-binding protein
HHK01_RS14920	PF14698	Argininosuccinate lyase C-terminal
HHK01_RS14920	PF00206	Lyase
HHK01_RS14925	PF03553	Na+/H+ antiporter family
HHK01_RS14935	PF09678	Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
HHK01_RS14945	PF04239	Protein of unknown function (DUF421)
HHK01_RS14950	PF01238	Phosphomannose isomerase type I
HHK01_RS14955	PF09261	Alpha mannosidase middle domain
HHK01_RS14955	PF01074	Glycosyl hydrolases family 38 N-terminal domain
HHK01_RS14955	PF07748	Glycosyl hydrolases family 38 C-terminal domain
HHK01_RS14960	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
HHK01_RS14960	PF02378	Phosphotransferase system, EIIC 
HHK01_RS14960	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
HHK01_RS14965	PF01380	SIS domain
HHK01_RS14965	PF01418	Helix-turn-helix domain, rpiR family
HHK01_RS14970	PF04951	D-aminopeptidase
HHK01_RS14980	PF04851	Type III restriction enzyme, res subunit
HHK01_RS14980	PF00271	Helicase conserved C-terminal domain
HHK01_RS14985	PF00293	NUDIX domain
HHK01_RS14995	PF00251	Glycosyl hydrolases family 32 N-terminal domain
HHK01_RS14995	PF08244	Glycosyl hydrolases family 32 C terminal
HHK01_RS15005	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
HHK01_RS15005	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
HHK01_RS15010	PF01261	Xylose isomerase-like TIM barrel
HHK01_RS15015	PF04854	Protein of unknown function, DUF624
HHK01_RS15020	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS15025	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS15030	PF01547	Bacterial extracellular solute-binding protein
HHK01_RS15035	PF00480	ROK family
HHK01_RS15040	PF04616	Glycosyl hydrolases family 43
HHK01_RS15040	PF17851	Beta xylosidase C-terminal Concanavalin A-like domain 
HHK01_RS15045	PF03553	Na+/H+ antiporter family
HHK01_RS15050	PF06039	Malate:quinone oxidoreductase (Mqo)
HHK01_RS15055	PF13460	NAD(P)H-binding 
HHK01_RS15060	PF08240	Alcohol dehydrogenase GroES-like domain
HHK01_RS15060	PF00107	Zinc-binding dehydrogenase
HHK01_RS15065	PF13411	MerR HTH family regulatory protein
HHK01_RS15085	PF01925	Sulfite exporter TauE/SafE
HHK01_RS15090	PF01206	Sulfurtransferase TusA
HHK01_RS15095	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS15095	PF00581	Rhodanese-like domain
HHK01_RS15100	PF13686	DsrE/DsrF/DrsH-like family
HHK01_RS15105	PF01206	Sulfurtransferase TusA
HHK01_RS15105	PF00581	Rhodanese-like domain
HHK01_RS15110	PF00581	Rhodanese-like domain
HHK01_RS15120	PF02583	Metal-sensitive transcriptional repressor
HHK01_RS15130	PF00232	Glycosyl hydrolase family 1
HHK01_RS15135	PF02378	Phosphotransferase system, EIIC 
HHK01_RS15135	PF00367	phosphotransferase system, EIIB
HHK01_RS15135	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
HHK01_RS15140	PF00392	Bacterial regulatory proteins, gntR family
HHK01_RS15140	PF07702	UTRA domain
HHK01_RS15145	PF14319	Transposase zinc-binding domain
HHK01_RS15145	PF04986	Putative transposase
HHK01_RS15150	PF05368	NmrA-like family
HHK01_RS15160	PF00296	Luciferase-like monooxygenase
HHK01_RS15170	PF00440	Bacterial regulatory proteins, tetR family
HHK01_RS15180	PF01609	Transposase DDE domain
HHK01_RS15190	PF01609	Transposase DDE domain
HHK01_RS15200	PF02590	Predicted SPOUT methyltransferase
HHK01_RS15210	PF13180	PDZ domain
HHK01_RS15215	PF00753	Metallo-beta-lactamase superfamily
HHK01_RS15225	PF07435	YycH protein
HHK01_RS15230	PF00672	HAMP domain
HHK01_RS15230	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HHK01_RS15230	PF00512	His Kinase A (phospho-acceptor) domain
HHK01_RS15230	PF13426	PAS domain
HHK01_RS15235	PF00486	Transcriptional regulatory protein, C terminal
HHK01_RS15235	PF00072	Response regulator receiver domain
HHK01_RS15240	PF10145	Phage-related minor tail protein
HHK01_RS15240	PF01464	Transglycosylase SLT domain
HHK01_RS15240	PF01551	Peptidase family M23
HHK01_RS15245	PF00709	Adenylosuccinate synthetase
HHK01_RS15250	PF12681	Glyoxalase-like domain
HHK01_RS15255	PF00772	DnaB-like helicase N terminal domain
HHK01_RS15255	PF03796	DnaB-like helicase C terminal domain
HHK01_RS15270	PF00356	Bacterial regulatory proteins, lacI family
HHK01_RS15275	PF01547	Bacterial extracellular solute-binding protein
HHK01_RS15280	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS15285	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS15295	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
HHK01_RS15295	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
HHK01_RS15300	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
HHK01_RS15300	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
HHK01_RS15310	PF03948	Ribosomal protein L9, C-terminal domain
HHK01_RS15310	PF01281	Ribosomal protein L9, N-terminal domain
HHK01_RS15315	PF01368	DHH family
HHK01_RS15315	PF02272	DHHA1 domain
HHK01_RS15325	PF01084	Ribosomal protein S18
HHK01_RS15330	PF00436	Single-strand binding protein family
HHK01_RS15335	PF01250	Ribosomal protein S6
HHK01_RS15345	PF01609	Transposase DDE domain
HHK01_RS15355	PF01926	50S ribosome-binding GTPase
HHK01_RS15355	PF06071	Protein of unknown function (DUF933)
HHK01_RS15360	PF00589	Phage integrase family
HHK01_RS15365	PF02080	TrkA-C domain
HHK01_RS15365	PF00999	Sodium/hydrogen exchanger family
HHK01_RS15365	PF03471	Transporter associated domain
HHK01_RS15370	PF06107	Bacterial protein of unknown function (DUF951)
HHK01_RS15375	PF00924	Mechanosensitive ion channel
HHK01_RS15380	PF06866	Protein of unknown function (DUF1256)
HHK01_RS15385	PF04474	Protein of unknown function (DUF554)
HHK01_RS15390	PF17762	HTH domain found in ParB protein
HHK01_RS15390	PF02195	ParB-like nuclease domain
HHK01_RS15395	PF13614	AAA domain
HHK01_RS15400	PF17762	HTH domain found in ParB protein
HHK01_RS15400	PF02195	ParB-like nuclease domain
HHK01_RS15405	PF02527	rRNA small subunit methyltransferase G
HHK01_RS15410	PF01134	Glucose inhibited division protein A
HHK01_RS15410	PF13932	GidA associated domain
HHK01_RS15415	PF10396	GTP-binding protein TrmE N-terminus
HHK01_RS15415	PF12631	MnmE helical domain
HHK01_RS15415	PF01926	50S ribosome-binding GTPase
HHK01_RS15420	PF01424	R3H domain
HHK01_RS15420	PF14804	Jag N-terminus
HHK01_RS15425	PF02096	60Kd inner membrane protein
HHK01_RS15435	PF00468	Ribosomal protein L34
HHK01_RS15440	PF00188	Cysteine-rich secretory protein family
HHK01_RS15445	PF01476	LysM domain
HHK01_RS15500	PF00082	Subtilase family
HHK01_RS15505	PF00082	Subtilase family
HHK01_RS15530	PF00132	Bacterial transferase hexapeptide (six repeats)
HHK01_RS15635	PF00583	Acetyltransferase (GNAT) family
HHK01_RS15650	PF00528	Binding-protein-dependent transport system inner membrane component
HHK01_RS15805	PF02225	PA domain
HHK01_RS15805	PF13860	FlgD Ig-like domain
HHK01_RS15805	PF05922	Peptidase inhibitor I9
HHK01_RS15805	PF00082	Subtilase family
