N288_RS00005	SM00382	ATPases associated with a variety of cellular activities
N288_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
N288_RS00010	SM00480	DNA polymerase III beta subunit
N288_RS00035	SM00387	Histidine kinase-like ATPases
N288_RS00035	SM00433	TopoisomeraseII
N288_RS00040	SM00434	DNA Topoisomerase IV
N288_RS00045	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS00080	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS00080	SM01240	N288_RS00080
N288_RS00085	SM00936	Penicillin-binding protein 5, C-terminal domain 
N288_RS00125	SM00257	Lysin motif
N288_RS00125	SM00636	N288_RS00125
N288_RS00140	SM00382	ATPases associated with a variety of cellular activities
N288_RS00150	SM00493	N288_RS00150
N288_RS00250	SM00966	SpoVT / AbrB like domain 
N288_RS00270	SM01208	N288_RS00270
N288_RS00275	SM00493	N288_RS00275
N288_RS00280	SM00650	Ribosomal RNA adenine dimethylases
N288_RS00325	SM01400	N288_RS00325
N288_RS00345	SM00487	DEAD-like helicases superfamily
N288_RS00345	SM00490	helicase superfamily c-terminal domain
N288_RS00345	SM00982	N288_RS00345
N288_RS00345	SM01058	CarD-like/TRCF domain
N288_RS00350	SM00966	SpoVT / AbrB like domain 
N288_RS00365	SM00363	S4 RNA-binding domain
N288_RS00385	SM00316	Ribosomal protein S1-like RNA-binding domain
N288_RS00400	SM00331	Sigma factor PP2C-like phosphatases
N288_RS00400	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
N288_RS00410	SM00220	Serine/Threonine protein kinases, catalytic domain
N288_RS00415	SM00977	TilS substrate C-terminal domain
N288_RS00425	SM00382	ATPases associated with a variety of cellular activities
N288_RS00470	SM00905	Dihydroneopterin aldolase
N288_RS00480	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS00585	SM00382	ATPases associated with a variety of cellular activities
N288_RS00585	SM01086	C-terminal, D2-small domain, of ClpB protein
N288_RS00590	SM00382	ATPases associated with a variety of cellular activities
N288_RS00600	SM00670	Large family of predicted nucleotide-binding domains
N288_RS00625	SM00840	N288_RS00625
N288_RS00630	SM00535	Ribonuclease III family
N288_RS00635	SM00967	RNA 2'-O ribose methyltransferase substrate binding
N288_RS00645	SM00421	helix_turn_helix, Lux Regulon
N288_RS00660	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
N288_RS00660	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
N288_RS00665	SM00649	Ribosomal protein L11/L12
N288_RS00700	SM00663	RNA polymerase I subunit A N-terminus
N288_RS00720	SM00838	Elongation factor G C-terminus
N288_RS00720	SM00889	Elongation factor G, domain IV
N288_RS00730	SM01403	N288_RS00730
N288_RS00750	SM01382	N288_RS00750
N288_RS00750	SM01383	N288_RS00750
N288_RS00765	SM00322	K homology RNA-binding domain
N288_RS00785	SM01374	N288_RS00785
N288_RS00790	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
N288_RS00850	SM00316	Ribosomal protein S1-like RNA-binding domain
N288_RS00870	SM00662	RNA polymerases D
N288_RS00880	SM00382	ATPases associated with a variety of cellular activities
N288_RS00885	SM00382	ATPases associated with a variety of cellular activities
N288_RS00915	SM00646	N288_RS00915
N288_RS00930	SM01251	N288_RS00930
N288_RS01045	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS01060	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
N288_RS01080	SM00855	Phosphoglycerate mutase family
N288_RS01175	SM00046	Diacylglycerol kinase catalytic domain (presumed)
N288_RS01210	SM00836	DALR anticodon binding domain
N288_RS01210	SM01016	Arginyl tRNA synthetase N terminal dom
N288_RS01245	SM00382	ATPases associated with a variety of cellular activities
N288_RS01275	SM00855	Phosphoglycerate mutase family
N288_RS01300	SM00855	Phosphoglycerate mutase family
N288_RS01330	SM00354	helix_turn _helix lactose operon repressor
N288_RS01370	SM00363	S4 RNA-binding domain
N288_RS01415	SM00487	DEAD-like helicases superfamily
N288_RS01415	SM00490	helicase superfamily c-terminal domain
N288_RS01450	SM01005	Alanine racemase, C-terminal domain
N288_RS01480	SM00331	Sigma factor PP2C-like phosphatases
N288_RS01480	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
N288_RS01500	SM00331	Sigma factor PP2C-like phosphatases
N288_RS01505	SM00316	Ribosomal protein S1-like RNA-binding domain
N288_RS01505	SM00732	Likely ribonuclease with RNase H fold.
N288_RS01510	SM00731	SprT homologues.
N288_RS01595	SM01001	AIR carboxylase
N288_RS01605	SM00998	Adenylosuccinate lyase C-terminus
N288_RS01620	SM01211	N288_RS01620
N288_RS01645	SM00798	AICARFT/IMPCHase bienzyme
N288_RS01645	SM00851	MGS-like domain
N288_RS01650	SM01209	N288_RS01650
N288_RS01650	SM01210	N288_RS01650
N288_RS01690	SM00278	Helix-hairpin-helix DNA-binding motif class 1
N288_RS01690	SM00292	breast cancer carboxy-terminal domain
N288_RS01690	SM00532	Ligase N family
N288_RS01760	SM00845	GatB domain
N288_RS01785	SM01207	N288_RS01785
N288_RS01810	SM00344	helix_turn_helix ASNC type
N288_RS01880	SM00046	Diacylglycerol kinase catalytic domain (presumed)
N288_RS01960	SM01240	N288_RS01960
N288_RS02000	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS02005	SM00487	DEAD-like helicases superfamily
N288_RS02005	SM00490	helicase superfamily c-terminal domain
N288_RS02010	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS02015	SM00478	endonuclease III
N288_RS02035	SM00354	helix_turn _helix lactose operon repressor
N288_RS02075	SM00829	Enoylreductase
N288_RS02080	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS02080	SM00448	cheY-homologous receiver domain
N288_RS02085	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS02105	SM01038	Beta galactosidase small chain
N288_RS02120	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS02120	SM00895	N288_RS02120
N288_RS02160	SM00382	ATPases associated with a variety of cellular activities
N288_RS02205	SM01266	N288_RS02205
N288_RS02225	SM00448	cheY-homologous receiver domain
N288_RS02225	SM00862	Transcriptional regulatory protein, C terminal
N288_RS02230	SM00387	Histidine kinase-like ATPases
N288_RS02230	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS02235	SM00829	Enoylreductase
N288_RS02240	SM00257	Lysin motif
N288_RS02245	SM00829	Enoylreductase
N288_RS02295	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS02310	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS02360	SM00729	Elongator protein 3, MiaB family, Radical SAM
N288_RS02405	SM01060	N288_RS02405
N288_RS02410	SM00267	diguanylate cyclase
N288_RS02415	SM00357	Cold shock protein domain
N288_RS02500	SM00710	Parallel beta-helix repeats
N288_RS02570	SM00052	Putative diguanylate phosphodiesterase
N288_RS02570	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
N288_RS02570	SM00091	PAS domain
N288_RS02570	SM00267	diguanylate cyclase
N288_RS02575	SM00422	helix_turn_helix, mercury resistance
N288_RS02595	SM00327	von Willebrand factor (vWF) type A domain
N288_RS02690	SM00382	ATPases associated with a variety of cellular activities
N288_RS02700	SM00387	Histidine kinase-like ATPases
N288_RS02705	SM00421	helix_turn_helix, Lux Regulon
N288_RS02705	SM00448	cheY-homologous receiver domain
N288_RS02720	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS02770	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS02805	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS02815	SM00382	ATPases associated with a variety of cellular activities
N288_RS02850	SM00855	Phosphoglycerate mutase family
N288_RS02870	SM00382	ATPases associated with a variety of cellular activities
N288_RS02905	SM00387	Histidine kinase-like ATPases
N288_RS02905	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS02910	SM00448	cheY-homologous receiver domain
N288_RS02910	SM00862	Transcriptional regulatory protein, C terminal
N288_RS02950	SM00382	ATPases associated with a variety of cellular activities
N288_RS02955	SM00382	ATPases associated with a variety of cellular activities
N288_RS02980	SM00344	helix_turn_helix ASNC type
N288_RS03035	SM00487	DEAD-like helicases superfamily
N288_RS03035	SM00490	helicase superfamily c-terminal domain
N288_RS03115	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
N288_RS03115	SM01232	N288_RS03115
N288_RS03145	SM00387	Histidine kinase-like ATPases
N288_RS03150	SM00421	helix_turn_helix, Lux Regulon
N288_RS03150	SM00448	cheY-homologous receiver domain
N288_RS03165	SM00382	ATPases associated with a variety of cellular activities
N288_RS03365	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
N288_RS03365	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
N288_RS03365	SM00493	N288_RS03365
N288_RS03440	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS03465	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS03490	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS03495	SM00422	helix_turn_helix, mercury resistance
N288_RS03525	SM00052	Putative diguanylate phosphodiesterase
N288_RS03525	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
N288_RS03525	SM00091	PAS domain
N288_RS03525	SM00267	diguanylate cyclase
N288_RS03530	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS03530	SM00866	N288_RS03530
N288_RS03555	SM00849	Metallo-beta-lactamase superfamily
N288_RS03565	SM00226	Low molecular weight phosphatase family
N288_RS03635	SM00871	Bacterial transcription activator, effector binding domain
N288_RS03640	SM00829	Enoylreductase
N288_RS03705	SM00478	endonuclease III
N288_RS03740	SM00382	ATPases associated with a variety of cellular activities
N288_RS03765	SM00382	ATPases associated with a variety of cellular activities
N288_RS03775	SM00927	DNA mismatch repair enzyme MutH
N288_RS03790	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS03810	SM00487	DEAD-like helicases superfamily
N288_RS03810	SM00490	helicase superfamily c-terminal domain
N288_RS03875	SM00382	ATPases associated with a variety of cellular activities
N288_RS03910	SM00382	ATPases associated with a variety of cellular activities
N288_RS03920	SM00387	Histidine kinase-like ATPases
N288_RS03920	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS03975	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
N288_RS03985	SM00226	Low molecular weight phosphatase family
N288_RS03990	SM00195	Dual specificity phosphatase, catalytic domain
N288_RS04010	SM00387	Histidine kinase-like ATPases
N288_RS04010	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS04090	SM01321	N288_RS04090
N288_RS04105	SM00382	ATPases associated with a variety of cellular activities
N288_RS04125	SM00267	diguanylate cyclase
N288_RS04215	SM00894	Excalibur calcium-binding domain
N288_RS04220	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
N288_RS04220	SM00267	diguanylate cyclase
N288_RS04255	SM00052	Putative diguanylate phosphodiesterase
N288_RS04260	SM00267	diguanylate cyclase
N288_RS04270	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS04270	SM00871	Bacterial transcription activator, effector binding domain
N288_RS04395	SM00860	SMI1 / KNR4 family
N288_RS04420	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS04510	SM00357	Cold shock protein domain
N288_RS04565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS04565	SM00387	Histidine kinase-like ATPases
N288_RS04565	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS04570	SM00448	cheY-homologous receiver domain
N288_RS04570	SM00862	Transcriptional regulatory protein, C terminal
N288_RS04635	SM00091	PAS domain
N288_RS04635	SM00387	Histidine kinase-like ATPases
N288_RS04640	SM00448	cheY-homologous receiver domain
N288_RS04650	SM00919	Malic enzyme, NAD binding domain
N288_RS04650	SM01274	N288_RS04650
N288_RS04665	SM00267	diguanylate cyclase
N288_RS04690	SM00382	ATPases associated with a variety of cellular activities
N288_RS04695	SM00382	ATPases associated with a variety of cellular activities
N288_RS04705	SM00062	Bacterial periplasmic substrate-binding proteins
N288_RS04705	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
N288_RS04725	SM00382	ATPases associated with a variety of cellular activities
N288_RS04775	SM00387	Histidine kinase-like ATPases
N288_RS04800	SM01217	N288_RS04800
N288_RS04825	SM00354	helix_turn _helix lactose operon repressor
N288_RS04865	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS04930	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS04940	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
N288_RS04950	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS04955	SM00052	Putative diguanylate phosphodiesterase
N288_RS04955	SM00267	diguanylate cyclase
N288_RS04985	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS04985	SM00895	N288_RS04985
N288_RS05040	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS05065	SM00062	Bacterial periplasmic substrate-binding proteins
N288_RS05065	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
N288_RS05075	SM00382	ATPases associated with a variety of cellular activities
N288_RS05090	SM01022	N288_RS05090
N288_RS05105	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
N288_RS05110	SM00387	Histidine kinase-like ATPases
N288_RS05150	SM00849	Metallo-beta-lactamase superfamily
N288_RS05155	SM00344	helix_turn_helix ASNC type
N288_RS05185	SM00382	ATPases associated with a variety of cellular activities
N288_RS05220	SM00994	ClpX C4-type zinc finger
N288_RS05275	SM00822	N288_RS05275
N288_RS05305	SM00478	endonuclease III
N288_RS05305	SM00525	N288_RS05305
N288_RS05335	SM00382	ATPases associated with a variety of cellular activities
N288_RS05340	SM00382	ATPases associated with a variety of cellular activities
N288_RS05345	SM00382	ATPases associated with a variety of cellular activities
N288_RS05380	SM00382	ATPases associated with a variety of cellular activities
N288_RS05550	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS05555	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS05555	SM00448	cheY-homologous receiver domain
N288_RS05575	SM00873	B3/4 domain
N288_RS05580	SM00567	E-Z type HEAT repeats
N288_RS05600	SM00763	PrkA AAA domain
N288_RS05635	SM00938	Nitrogen regulatory protein P-II
N288_RS05670	SM00387	Histidine kinase-like ATPases
N288_RS05670	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS05675	SM00267	diguanylate cyclase
N288_RS05675	SM00448	cheY-homologous receiver domain
N288_RS05695	SM00448	cheY-homologous receiver domain
N288_RS05700	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
N288_RS05700	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS05700	SM00387	Histidine kinase-like ATPases
N288_RS05700	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS05700	SM00448	cheY-homologous receiver domain
N288_RS05740	SM00448	cheY-homologous receiver domain
N288_RS05740	SM00862	Transcriptional regulatory protein, C terminal
N288_RS05745	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS05745	SM00387	Histidine kinase-like ATPases
N288_RS05745	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS05755	SM00354	helix_turn _helix lactose operon repressor
N288_RS05765	SM01350	N288_RS05765
N288_RS05850	SM00421	helix_turn_helix, Lux Regulon
N288_RS05850	SM00448	cheY-homologous receiver domain
N288_RS05890	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS05910	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
N288_RS05990	SM00448	cheY-homologous receiver domain
N288_RS05990	SM00850	LytTr DNA-binding domain
N288_RS05995	SM00382	ATPases associated with a variety of cellular activities
N288_RS06035	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS06050	SM00448	cheY-homologous receiver domain
N288_RS06050	SM00862	Transcriptional regulatory protein, C terminal
N288_RS06055	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS06055	SM00387	Histidine kinase-like ATPases
N288_RS06055	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS06060	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS06060	SM01091	Transporter associated domain
N288_RS06065	SM00422	helix_turn_helix, mercury resistance
N288_RS06080	SM00387	Histidine kinase-like ATPases
N288_RS06080	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS06085	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS06180	SM00382	ATPases associated with a variety of cellular activities
N288_RS06185	SM00382	ATPases associated with a variety of cellular activities
N288_RS06205	SM00382	ATPases associated with a variety of cellular activities
N288_RS06280	SM00729	Elongator protein 3, MiaB family, Radical SAM
N288_RS06305	SM00382	ATPases associated with a variety of cellular activities
N288_RS06340	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS06385	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS06420	SM00382	ATPases associated with a variety of cellular activities
N288_RS06440	SM00014	Acid phosphatase homologues
N288_RS06450	SM00946	Prolyl-tRNA synthetase, C-terminal
N288_RS06455	SM00091	PAS domain
N288_RS06455	SM00387	Histidine kinase-like ATPases
N288_RS06455	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS06460	SM00155	Phospholipase D. Active site motifs.
N288_RS06475	SM00327	von Willebrand factor (vWF) type A domain
N288_RS06510	SM00387	Histidine kinase-like ATPases
N288_RS06515	SM00421	helix_turn_helix, Lux Regulon
N288_RS06515	SM00448	cheY-homologous receiver domain
N288_RS06550	SM00849	Metallo-beta-lactamase superfamily
N288_RS06580	SM00382	ATPases associated with a variety of cellular activities
N288_RS06585	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS06610	SM00914	N288_RS06610
N288_RS06645	SM00028	Tetratricopeptide repeats
N288_RS06645	SM01043	Bacterial transcriptional activator domain
N288_RS06660	SM00382	ATPases associated with a variety of cellular activities
N288_RS06665	SM00382	ATPases associated with a variety of cellular activities
N288_RS06695	SM00822	N288_RS06695
N288_RS06795	SM00052	Putative diguanylate phosphodiesterase
N288_RS06795	SM00091	PAS domain
N288_RS06795	SM00267	diguanylate cyclase
N288_RS06795	SM00897	FIST N domain
N288_RS06795	SM01204	N288_RS06795
N288_RS06805	SM00421	helix_turn_helix, Lux Regulon
N288_RS06805	SM00448	cheY-homologous receiver domain
N288_RS06810	SM00382	ATPases associated with a variety of cellular activities
N288_RS06855	SM00642	Alpha-amylase domain
N288_RS06875	SM00642	Alpha-amylase domain
N288_RS06885	SM00354	helix_turn _helix lactose operon repressor
N288_RS06905	SM00316	Ribosomal protein S1-like RNA-binding domain
N288_RS06950	SM00852	Probable molybdopterin binding domain
N288_RS06960	SM00859	Semialdehyde dehydrogenase, NAD binding domain
N288_RS06980	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
N288_RS06985	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
N288_RS07005	SM00382	ATPases associated with a variety of cellular activities
N288_RS07005	SM01086	C-terminal, D2-small domain, of ClpB protein
N288_RS07045	SM00825	Beta-ketoacyl synthase
N288_RS07055	SM00382	ATPases associated with a variety of cellular activities
N288_RS07060	SM00382	ATPases associated with a variety of cellular activities
N288_RS07110	SM00382	ATPases associated with a variety of cellular activities
N288_RS07115	SM00382	ATPases associated with a variety of cellular activities
N288_RS07145	SM00155	Phospholipase D. Active site motifs.
N288_RS07180	SM01118	N288_RS07180
N288_RS07190	SM00954	Region found in RelA / SpoT proteins
N288_RS07210	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS07210	SM00924	MgtE intracellular N domain
N288_RS07275	SM00822	N288_RS07275
N288_RS07325	SM00829	Enoylreductase
N288_RS07385	SM00382	ATPases associated with a variety of cellular activities
N288_RS07430	SM00382	ATPases associated with a variety of cellular activities
N288_RS07445	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
N288_RS07455	SM00382	ATPases associated with a variety of cellular activities
N288_RS07555	SM00244	prohibitin homologues
N288_RS07565	SM00138	Methyltransferase, chemotaxis proteins 
N288_RS07565	SM00387	Histidine kinase-like ATPases
N288_RS07565	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS07625	SM00382	ATPases associated with a variety of cellular activities
N288_RS07645	SM00257	Lysin motif
N288_RS07665	SM00642	Alpha-amylase domain
N288_RS07670	SM00642	Alpha-amylase domain
N288_RS07690	SM00052	Putative diguanylate phosphodiesterase
N288_RS07705	SM00382	ATPases associated with a variety of cellular activities
N288_RS07765	SM00729	Elongator protein 3, MiaB family, Radical SAM
N288_RS07775	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS07775	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS07785	SM00091	PAS domain
N288_RS07785	SM00387	Histidine kinase-like ATPases
N288_RS07785	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS07790	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
N288_RS07825	SM01007	Class II Aldolase and Adducin N-terminal domain
N288_RS07860	SM00387	Histidine kinase-like ATPases
N288_RS07860	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS07870	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS07880	SM00387	Histidine kinase-like ATPases
N288_RS07880	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS07885	SM00382	ATPases associated with a variety of cellular activities
N288_RS07885	SM01086	C-terminal, D2-small domain, of ClpB protein
N288_RS07930	SM00382	ATPases associated with a variety of cellular activities
N288_RS08000	SM00260	Two component signalling adaptor domain
N288_RS08000	SM00448	cheY-homologous receiver domain
N288_RS08020	SM00257	Lysin motif
N288_RS08045	SM00052	Putative diguanylate phosphodiesterase
N288_RS08065	SM00849	Metallo-beta-lactamase superfamily
N288_RS08105	SM00382	ATPases associated with a variety of cellular activities
N288_RS08110	SM00382	ATPases associated with a variety of cellular activities
N288_RS08135	SM00849	Metallo-beta-lactamase superfamily
N288_RS08170	SM00861	Transketolase, pyrimidine binding domain
N288_RS08255	SM00838	Elongation factor G C-terminus
N288_RS08290	SM00670	Large family of predicted nucleotide-binding domains
N288_RS08310	SM00878	Biotin carboxylase C-terminal domain
N288_RS08370	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS08445	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
N288_RS08470	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
N288_RS08480	SM00878	Biotin carboxylase C-terminal domain
N288_RS08530	SM00740	N288_RS08530
N288_RS08535	SM00740	N288_RS08535
N288_RS08590	SM00842	Cell division protein FtsA
N288_RS08595	SM00864	Tubulin/FtsZ family, GTPase domain
N288_RS08595	SM00865	Tubulin/FtsZ family, C-terminal domain
N288_RS08640	SM00363	S4 RNA-binding domain
N288_RS08665	SM00363	S4 RNA-binding domain
N288_RS08690	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
N288_RS08695	SM00851	MGS-like domain
N288_RS08695	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
N288_RS08710	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
N288_RS08725	SM00831	Cation transporter/ATPase, N-terminus
N288_RS08740	SM00072	Guanylate kinase homologues.
N288_RS08745	SM01409	N288_RS08745
N288_RS08755	SM00487	DEAD-like helicases superfamily
N288_RS08755	SM00490	helicase superfamily c-terminal domain
N288_RS08780	SM00331	Sigma factor PP2C-like phosphatases
N288_RS08780	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
N288_RS08785	SM00220	Serine/Threonine protein kinases, catalytic domain
N288_RS08785	SM00740	N288_RS08785
N288_RS08800	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
N288_RS08820	SM01120	N288_RS08820
N288_RS08820	SM01121	N288_RS08820
N288_RS08825	SM00487	DEAD-like helicases superfamily
N288_RS08825	SM00490	helicase superfamily c-terminal domain
N288_RS08830	SM00420	helix_turn_helix, Deoxyribose operon repressor
N288_RS08840	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
N288_RS08845	SM00822	N288_RS08845
N288_RS08855	SM00358	Double-stranded RNA binding motif
N288_RS08855	SM00535	Ribonuclease III family
N288_RS08860	SM00968	SMC proteins Flexible Hinge Domain
N288_RS08865	SM00382	ATPases associated with a variety of cellular activities
N288_RS08865	SM00962	SRP54-type protein, GTPase domain
N288_RS08865	SM00963	SRP54-type protein, helical bundle domain
N288_RS08875	SM00382	ATPases associated with a variety of cellular activities
N288_RS08890	SM00382	ATPases associated with a variety of cellular activities
N288_RS08905	SM00327	von Willebrand factor (vWF) type A domain
N288_RS08915	SM00382	ATPases associated with a variety of cellular activities
N288_RS08915	SM00962	SRP54-type protein, GTPase domain
N288_RS08915	SM00963	SRP54-type protein, helical bundle domain
N288_RS08985	SM00881	CoA binding domain
N288_RS08995	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
N288_RS08995	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
N288_RS08995	SM00493	N288_RS08995
N288_RS09015	SM00382	ATPases associated with a variety of cellular activities
N288_RS09015	SM01086	C-terminal, D2-small domain, of ClpB protein
N288_RS09055	SM00382	ATPases associated with a variety of cellular activities
N288_RS09110	SM00448	cheY-homologous receiver domain
N288_RS09145	SM00382	ATPases associated with a variety of cellular activities
N288_RS09145	SM00962	SRP54-type protein, GTPase domain
N288_RS09155	SM00448	cheY-homologous receiver domain
N288_RS09160	SM00073	Histidine Phosphotransfer domain
N288_RS09160	SM00260	Two component signalling adaptor domain
N288_RS09160	SM00387	Histidine kinase-like ATPases
N288_RS09160	SM01231	N288_RS09160
N288_RS09165	SM00260	Two component signalling adaptor domain
N288_RS09240	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
N288_RS09255	SM00479	N288_RS09255
N288_RS09255	SM00481	DNA polymerase alpha chain like domain
N288_RS09265	SM00316	Ribosomal protein S1-like RNA-binding domain
N288_RS09265	SM00322	K homology RNA-binding domain
N288_RS09300	SM00904	Riboflavin kinase
N288_RS09305	SM01387	N288_RS09305
N288_RS09310	SM00316	Ribosomal protein S1-like RNA-binding domain
N288_RS09310	SM00322	K homology RNA-binding domain
N288_RS09340	SM00859	Semialdehyde dehydrogenase, NAD binding domain
N288_RS09350	SM01130	N288_RS09350
N288_RS09355	SM00849	Metallo-beta-lactamase superfamily
N288_RS09370	SM00382	ATPases associated with a variety of cellular activities
N288_RS09370	SM00843	N288_RS09370
N288_RS09375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS09375	SM00866	N288_RS09375
N288_RS09385	SM00382	ATPases associated with a variety of cellular activities
N288_RS09400	SM00267	diguanylate cyclase
N288_RS09440	SM00852	Probable molybdopterin binding domain
N288_RS09445	SM00382	ATPases associated with a variety of cellular activities
N288_RS09450	SM00322	K homology RNA-binding domain
N288_RS09450	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS09480	SM00729	Elongator protein 3, MiaB family, Radical SAM
N288_RS09500	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
N288_RS09500	SM00534	ATPase domain of DNA mismatch repair MUTS family
N288_RS09505	SM00853	MutL C terminal dimerisation domain
N288_RS09505	SM01340	N288_RS09505
N288_RS09555	SM00382	ATPases associated with a variety of cellular activities
N288_RS09575	SM00422	helix_turn_helix, mercury resistance
N288_RS09580	SM01230	N288_RS09580
N288_RS09585	SM00257	Lysin motif
N288_RS09585	SM00646	N288_RS09585
N288_RS09610	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS09635	SM00857	Resolvase, N terminal domain
N288_RS09645	SM00861	Transketolase, pyrimidine binding domain
N288_RS09670	SM00382	ATPases associated with a variety of cellular activities
N288_RS09675	SM00382	ATPases associated with a variety of cellular activities
N288_RS09690	SM00448	cheY-homologous receiver domain
N288_RS09815	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS09815	SM00866	N288_RS09815
N288_RS09885	SM00448	cheY-homologous receiver domain
N288_RS09885	SM00862	Transcriptional regulatory protein, C terminal
N288_RS09890	SM00387	Histidine kinase-like ATPases
N288_RS09890	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS09950	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS09950	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS09955	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS09965	SM00382	ATPases associated with a variety of cellular activities
N288_RS09975	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS09985	SM00710	Parallel beta-helix repeats
N288_RS10055	SM00354	helix_turn _helix lactose operon repressor
N288_RS10065	SM00858	N288_RS10065
N288_RS10085	SM00822	N288_RS10085
N288_RS10150	SM00357	Cold shock protein domain
N288_RS10220	SM00257	Lysin motif
N288_RS10235	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
N288_RS10235	SM00091	PAS domain
N288_RS10235	SM00387	Histidine kinase-like ATPases
N288_RS10235	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS10260	SM00487	DEAD-like helicases superfamily
N288_RS10260	SM00488	N288_RS10260
N288_RS10260	SM00491	N288_RS10260
N288_RS10310	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
N288_RS10315	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS10335	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
N288_RS10335	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS10350	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
N288_RS10420	SM00267	diguanylate cyclase
N288_RS10435	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS10725	SM00382	ATPases associated with a variety of cellular activities
N288_RS10735	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
N288_RS10745	SM00861	Transketolase, pyrimidine binding domain
N288_RS10770	SM00903	Flavin reductase like domain
N288_RS10835	SM00450	Rhodanese Homology Domain
N288_RS10845	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS10855	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS10940	SM00382	ATPases associated with a variety of cellular activities
N288_RS10965	SM00387	Histidine kinase-like ATPases
N288_RS10965	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS10970	SM01207	N288_RS10970
N288_RS10995	SM00636	N288_RS10995
N288_RS11010	SM00881	CoA binding domain
N288_RS11015	SM00387	Histidine kinase-like ATPases
N288_RS11015	SM00433	TopoisomeraseII
N288_RS11020	SM00434	DNA Topoisomerase IV
N288_RS11060	SM00014	Acid phosphatase homologues
N288_RS11090	SM00382	ATPases associated with a variety of cellular activities
N288_RS11105	SM00450	Rhodanese Homology Domain
N288_RS11220	SM00490	helicase superfamily c-terminal domain
N288_RS11275	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS11280	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS11295	SM00091	PAS domain
N288_RS11305	SM00382	ATPases associated with a variety of cellular activities
N288_RS11320	SM00257	Lysin motif
N288_RS11320	SM00636	N288_RS11320
N288_RS11335	SM00479	N288_RS11335
N288_RS11365	SM00257	Lysin motif
N288_RS11425	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
N288_RS11425	SM00534	ATPase domain of DNA mismatch repair MUTS family
N288_RS11440	SM00382	ATPases associated with a variety of cellular activities
N288_RS11580	SM00861	Transketolase, pyrimidine binding domain
N288_RS11610	SM01018	B12 binding domain
N288_RS11620	SM00796	Allophanate hydrolase subunit 1
N288_RS11625	SM00797	Allophanate hydrolase subunit 2
N288_RS11655	SM00849	Metallo-beta-lactamase superfamily
N288_RS11665	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS11665	SM01091	Transporter associated domain
N288_RS11725	SM00387	Histidine kinase-like ATPases
N288_RS11795	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
N288_RS11855	SM00382	ATPases associated with a variety of cellular activities
N288_RS11875	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS11880	SM00480	DNA polymerase III beta subunit
N288_RS11955	SM00382	ATPases associated with a variety of cellular activities
N288_RS11970	SM00387	Histidine kinase-like ATPases
N288_RS11970	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS12005	SM00563	Phosphate acyltransferases
N288_RS12095	SM01060	N288_RS12095
N288_RS12125	SM00829	Enoylreductase
N288_RS12145	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
N288_RS12145	SM00220	Serine/Threonine protein kinases, catalytic domain
N288_RS12145	SM00387	Histidine kinase-like ATPases
N288_RS12145	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS12150	SM00448	cheY-homologous receiver domain
N288_RS12150	SM00862	Transcriptional regulatory protein, C terminal
N288_RS12165	SM00422	helix_turn_helix, mercury resistance
N288_RS12200	SM00487	DEAD-like helicases superfamily
N288_RS12200	SM00490	helicase superfamily c-terminal domain
N288_RS12355	SM00327	von Willebrand factor (vWF) type A domain
N288_RS12360	SM00382	ATPases associated with a variety of cellular activities
N288_RS12400	SM00421	helix_turn_helix, Lux Regulon
N288_RS12400	SM00448	cheY-homologous receiver domain
N288_RS12405	SM00387	Histidine kinase-like ATPases
N288_RS12460	SM00387	Histidine kinase-like ATPases
N288_RS12460	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS12490	SM00382	ATPases associated with a variety of cellular activities
N288_RS12530	SM01091	Transporter associated domain
N288_RS12675	SM00984	UDP binding domain
N288_RS12760	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS12760	SM00871	Bacterial transcription activator, effector binding domain
N288_RS12790	SM00382	ATPases associated with a variety of cellular activities
N288_RS12795	SM00382	ATPases associated with a variety of cellular activities
N288_RS12800	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS12805	SM00387	Histidine kinase-like ATPases
N288_RS12805	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS12845	SM00871	Bacterial transcription activator, effector binding domain
N288_RS12860	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS12860	SM00895	N288_RS12860
N288_RS12890	SM00422	helix_turn_helix, mercury resistance
N288_RS12945	SM00835	Cupin
N288_RS12970	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS12975	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS13045	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
N288_RS13090	SM00855	Phosphoglycerate mutase family
N288_RS13145	SM00354	helix_turn _helix lactose operon repressor
N288_RS13190	SM00849	Metallo-beta-lactamase superfamily
N288_RS13300	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS13330	SM00833	Cobalamin synthesis protein cobW C-terminal domain
N288_RS13465	SM00382	ATPases associated with a variety of cellular activities
N288_RS13470	SM00387	Histidine kinase-like ATPases
N288_RS13475	SM00448	cheY-homologous receiver domain
N288_RS13475	SM00862	Transcriptional regulatory protein, C terminal
N288_RS13515	SM01060	N288_RS13515
N288_RS13525	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS13525	SM00871	Bacterial transcription activator, effector binding domain
N288_RS13545	SM00387	Histidine kinase-like ATPases
N288_RS13545	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS13550	SM00448	cheY-homologous receiver domain
N288_RS13550	SM00862	Transcriptional regulatory protein, C terminal
N288_RS13580	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS13580	SM00387	Histidine kinase-like ATPases
N288_RS13580	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS13585	SM00448	cheY-homologous receiver domain
N288_RS13585	SM00862	Transcriptional regulatory protein, C terminal
N288_RS13600	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS13600	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS13660	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS13850	SM00448	cheY-homologous receiver domain
N288_RS13855	SM00387	Histidine kinase-like ATPases
N288_RS13890	SM00460	Transglutaminase/protease-like homologues
N288_RS13925	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS13970	SM00465	GIY-YIG type nucleases (URI domain)
N288_RS14010	SM00387	Histidine kinase-like ATPases
N288_RS14010	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS14025	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS14110	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
N288_RS14130	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS14135	SM01091	Transporter associated domain
N288_RS14145	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS14145	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS14185	SM00813	Alpha-L-arabinofuranosidase C-terminus
N288_RS14190	SM01207	N288_RS14190
N288_RS14285	SM00382	ATPases associated with a variety of cellular activities
N288_RS14290	SM00382	ATPases associated with a variety of cellular activities
N288_RS14315	SM00344	helix_turn_helix ASNC type
N288_RS14335	SM00729	Elongator protein 3, MiaB family, Radical SAM
N288_RS14350	SM00849	Metallo-beta-lactamase superfamily
N288_RS14370	SM00422	helix_turn_helix, mercury resistance
N288_RS14390	SM00052	Putative diguanylate phosphodiesterase
N288_RS14390	SM00091	PAS domain
N288_RS14390	SM00267	diguanylate cyclase
N288_RS14395	SM00382	ATPases associated with a variety of cellular activities
N288_RS14430	SM00849	Metallo-beta-lactamase superfamily
N288_RS14445	SM00062	Bacterial periplasmic substrate-binding proteins
N288_RS14455	SM00382	ATPases associated with a variety of cellular activities
N288_RS14510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS14550	SM00420	helix_turn_helix, Deoxyribose operon repressor
N288_RS14550	SM01134	N288_RS14550
N288_RS14590	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS14625	SM00331	Sigma factor PP2C-like phosphatases
N288_RS14625	SM00448	cheY-homologous receiver domain
N288_RS14630	SM00138	Methyltransferase, chemotaxis proteins 
N288_RS14635	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
N288_RS14635	SM00387	Histidine kinase-like ATPases
N288_RS14635	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS14635	SM00448	cheY-homologous receiver domain
N288_RS14645	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS14645	SM00924	MgtE intracellular N domain
N288_RS14675	SM00387	Histidine kinase-like ATPases
N288_RS14675	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS14710	SM00357	Cold shock protein domain
N288_RS14715	SM00487	DEAD-like helicases superfamily
N288_RS14715	SM00490	helicase superfamily c-terminal domain
N288_RS14720	SM00357	Cold shock protein domain
N288_RS14735	SM00014	Acid phosphatase homologues
N288_RS14740	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
N288_RS14760	SM00052	Putative diguanylate phosphodiesterase
N288_RS14855	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS14885	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS14885	SM00387	Histidine kinase-like ATPases
N288_RS14885	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS14890	SM00448	cheY-homologous receiver domain
N288_RS14890	SM00862	Transcriptional regulatory protein, C terminal
N288_RS14915	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS14920	SM00833	Cobalamin synthesis protein cobW C-terminal domain
N288_RS14930	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
N288_RS14930	SM00245	tail specific protease
N288_RS15005	SM00382	ATPases associated with a variety of cellular activities
N288_RS15025	SM00882	Coenzyme A transferase
N288_RS15030	SM00882	Coenzyme A transferase
N288_RS15050	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS15260	SM00567	E-Z type HEAT repeats
N288_RS15260	SM00932	Scaffold protein Nfu/NifU N terminal
N288_RS15265	SM00382	ATPases associated with a variety of cellular activities
N288_RS15270	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS15325	SM00529	Helix-turn-helix diphteria tox regulatory element
N288_RS15330	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
N288_RS15330	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
N288_RS15330	SM00493	N288_RS15330
N288_RS15345	SM00382	ATPases associated with a variety of cellular activities
N288_RS15360	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS15365	SM00357	Cold shock protein domain
N288_RS15405	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
N288_RS15405	SM00475	5'-3' exonuclease
N288_RS15415	SM00450	Rhodanese Homology Domain
N288_RS15505	SM00491	N288_RS15505
N288_RS15510	SM00981	N288_RS15510
N288_RS15545	SM00487	DEAD-like helicases superfamily
N288_RS15545	SM00490	helicase superfamily c-terminal domain
N288_RS15615	SM00478	endonuclease III
N288_RS15615	SM00525	N288_RS15615
N288_RS15640	SM00479	N288_RS15640
N288_RS15640	SM00487	DEAD-like helicases superfamily
N288_RS15640	SM00491	N288_RS15640
N288_RS15690	SM00851	MGS-like domain
N288_RS15745	SM00914	N288_RS15745
N288_RS15750	SM00028	Tetratricopeptide repeats
N288_RS15790	SM00138	Methyltransferase, chemotaxis proteins 
N288_RS15795	SM00562	N288_RS15795
N288_RS15825	SM00411	bacterial (prokaryotic) histone like domain
N288_RS15870	SM01240	N288_RS15870
N288_RS15875	SM00316	Ribosomal protein S1-like RNA-binding domain
N288_RS15880	SM00563	Phosphate acyltransferases
N288_RS15915	SM00870	N288_RS15915
N288_RS15925	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
N288_RS15935	SM00422	helix_turn_helix, mercury resistance
N288_RS15960	SM00257	Lysin motif
N288_RS15970	SM00487	DEAD-like helicases superfamily
N288_RS15970	SM00490	helicase superfamily c-terminal domain
N288_RS16020	SM00257	Lysin motif
N288_RS16035	SM00091	PAS domain
N288_RS16035	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS16035	SM00387	Histidine kinase-like ATPases
N288_RS16035	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS16040	SM00448	cheY-homologous receiver domain
N288_RS16040	SM00862	Transcriptional regulatory protein, C terminal
N288_RS16060	SM00363	S4 RNA-binding domain
N288_RS16150	SM00387	Histidine kinase-like ATPases
N288_RS16160	SM00936	Penicillin-binding protein 5, C-terminal domain 
N288_RS16165	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
N288_RS16240	SM00882	Coenzyme A transferase
N288_RS16245	SM00882	Coenzyme A transferase
N288_RS16300	SM00849	Metallo-beta-lactamase superfamily
N288_RS16320	SM00855	Phosphoglycerate mutase family
N288_RS16335	SM01350	N288_RS16335
N288_RS16345	SM00260	Two component signalling adaptor domain
N288_RS16375	SM00382	ATPases associated with a variety of cellular activities
N288_RS16385	SM00062	Bacterial periplasmic substrate-binding proteins
N288_RS16385	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
N288_RS16415	SM00861	Transketolase, pyrimidine binding domain
N288_RS16435	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
N288_RS16445	SM00091	PAS domain
N288_RS16445	SM00382	ATPases associated with a variety of cellular activities
N288_RS16460	SM00448	cheY-homologous receiver domain
N288_RS16465	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
N288_RS16480	SM00363	S4 RNA-binding domain
N288_RS16485	SM00861	Transketolase, pyrimidine binding domain
N288_RS16520	SM00878	Biotin carboxylase C-terminal domain
N288_RS16530	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS16570	SM00382	ATPases associated with a variety of cellular activities
N288_RS16585	SM00841	Elongation factor P, C-terminal
N288_RS16585	SM01185	N288_RS16585
N288_RS16635	SM00450	Rhodanese Homology Domain
N288_RS16660	SM00487	DEAD-like helicases superfamily
N288_RS16660	SM00490	helicase superfamily c-terminal domain
N288_RS16715	SM00382	ATPases associated with a variety of cellular activities
N288_RS16730	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
N288_RS16745	SM00849	Metallo-beta-lactamase superfamily
N288_RS16770	SM00257	Lysin motif
N288_RS16770	SM00631	N288_RS16770
N288_RS16850	SM00382	ATPases associated with a variety of cellular activities
N288_RS16900	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS16900	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS16935	SM00382	ATPases associated with a variety of cellular activities
N288_RS16945	SM00518	AP endonuclease family 2
N288_RS16950	SM00487	DEAD-like helicases superfamily
N288_RS16950	SM00490	helicase superfamily c-terminal domain
N288_RS16995	SM00400	zinc finger
N288_RS16995	SM00493	N288_RS16995
N288_RS17010	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS17050	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS17055	SM00322	K homology RNA-binding domain
N288_RS17100	SM01133	N288_RS17100
N288_RS17105	SM00729	Elongator protein 3, MiaB family, Radical SAM
N288_RS17120	SM00271	DnaJ molecular chaperone homology domain
N288_RS17140	SM00729	Elongator protein 3, MiaB family, Radical SAM
N288_RS17145	SM00838	Elongation factor G C-terminus
N288_RS17180	SM00849	Metallo-beta-lactamase superfamily
N288_RS17210	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS17220	SM01103	N288_RS17220
N288_RS17350	SM00732	Likely ribonuclease with RNase H fold.
N288_RS17360	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
N288_RS17385	SM00028	Tetratricopeptide repeats
N288_RS17410	SM00382	ATPases associated with a variety of cellular activities
N288_RS17415	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
N288_RS17440	SM00287	Bacterial SH3 domain homologues
N288_RS17440	SM00646	N288_RS17440
N288_RS17450	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS17450	SM00954	Region found in RelA / SpoT proteins
N288_RS17500	SM01323	N288_RS17500
N288_RS17515	SM00382	ATPases associated with a variety of cellular activities
N288_RS17520	SM00278	Helix-hairpin-helix DNA-binding motif class 1
N288_RS17545	SM00257	Lysin motif
N288_RS17590	SM01317	N288_RS17590
N288_RS17610	SM00316	Ribosomal protein S1-like RNA-binding domain
N288_RS17705	SM00382	ATPases associated with a variety of cellular activities
N288_RS17710	SM00382	ATPases associated with a variety of cellular activities
N288_RS17715	SM01208	N288_RS17715
N288_RS17745	SM00327	von Willebrand factor (vWF) type A domain
N288_RS17745	SM00635	Bacterial Ig-like domain 2
N288_RS17750	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
N288_RS17750	SM00267	diguanylate cyclase
N288_RS17775	SM00257	Lysin motif
N288_RS17785	SM01004	Delta-aminolevulinic acid dehydratase
N288_RS17815	SM00382	ATPases associated with a variety of cellular activities
N288_RS17825	SM00062	Bacterial periplasmic substrate-binding proteins
N288_RS17825	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
N288_RS17835	SM00382	ATPases associated with a variety of cellular activities
N288_RS17835	SM00464	Found in ATP-dependent protease La (LON)
N288_RS17840	SM00382	ATPases associated with a variety of cellular activities
N288_RS17845	SM00382	ATPases associated with a variety of cellular activities
N288_RS17845	SM00994	ClpX C4-type zinc finger
N288_RS17845	SM01086	C-terminal, D2-small domain, of ClpB protein
N288_RS17870	SM01329	N288_RS17870
N288_RS17875	SM00917	LeuA allosteric (dimerisation) domain
N288_RS17920	SM00909	Sporulation and spore germination
N288_RS17925	SM00341	Helicase and RNase D C-terminal
N288_RS17925	SM00487	DEAD-like helicases superfamily
N288_RS17925	SM00490	helicase superfamily c-terminal domain
N288_RS17925	SM00956	N288_RS17925
N288_RS17935	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS17940	SM00421	helix_turn_helix, Lux Regulon
N288_RS17975	SM00465	GIY-YIG type nucleases (URI domain)
N288_RS17985	SM00893	Electron transfer flavoprotein domain
N288_RS17990	SM00893	Electron transfer flavoprotein domain
N288_RS18015	SM00463	Small MutS-related domain
N288_RS18015	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
N288_RS18015	SM00534	ATPase domain of DNA mismatch repair MUTS family
N288_RS18020	SM00278	Helix-hairpin-helix DNA-binding motif class 1
N288_RS18020	SM00481	DNA polymerase alpha chain like domain
N288_RS18020	SM00483	DNA polymerase X family
N288_RS18040	SM00873	B3/4 domain
N288_RS18040	SM00874	tRNA synthetase B5 domain
N288_RS18040	SM00896	Ferredoxin-fold anticodon binding domain
N288_RS18050	SM00967	RNA 2'-O ribose methyltransferase substrate binding
N288_RS18100	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
N288_RS18110	SM00382	ATPases associated with a variety of cellular activities
N288_RS18135	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
N288_RS18150	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
N288_RS18150	SM01232	N288_RS18150
N288_RS18155	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
N288_RS18155	SM00474	3'-5' exonuclease
N288_RS18155	SM00475	5'-3' exonuclease
N288_RS18155	SM00482	DNA polymerase A domain
N288_RS18160	SM00244	prohibitin homologues
N288_RS18165	SM00244	prohibitin homologues
N288_RS18170	SM00091	PAS domain
N288_RS18170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS18170	SM00387	Histidine kinase-like ATPases
N288_RS18170	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS18175	SM00448	cheY-homologous receiver domain
N288_RS18175	SM00862	Transcriptional regulatory protein, C terminal
N288_RS18190	SM01329	N288_RS18190
N288_RS18235	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS18240	SM00919	Malic enzyme, NAD binding domain
N288_RS18240	SM01274	N288_RS18240
N288_RS18245	SM00481	DNA polymerase alpha chain like domain
N288_RS18270	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS18280	SM00849	Metallo-beta-lactamase superfamily
N288_RS18290	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
N288_RS18290	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
N288_RS18325	SM00852	Probable molybdopterin binding domain
N288_RS18395	SM00981	N288_RS18395
N288_RS18425	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
N288_RS18440	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
N288_RS18440	SM00267	diguanylate cyclase
N288_RS18450	SM00363	S4 RNA-binding domain
N288_RS18450	SM01390	N288_RS18450
N288_RS18455	SM00363	S4 RNA-binding domain
N288_RS18475	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS18500	SM00354	helix_turn _helix lactose operon repressor
N288_RS18505	SM00830	Chorismate mutase type II
N288_RS18510	SM00842	Cell division protein FtsA
N288_RS18595	SM00849	Metallo-beta-lactamase superfamily
N288_RS18620	SM00642	Alpha-amylase domain
N288_RS18655	SM00382	ATPases associated with a variety of cellular activities
N288_RS18665	SM00248	ankyrin repeats
N288_RS18670	SM00363	S4 RNA-binding domain
N288_RS18695	SM00450	Rhodanese Homology Domain
N288_RS18715	SM00091	PAS domain
N288_RS18715	SM00382	ATPases associated with a variety of cellular activities
N288_RS18745	SM00729	Elongator protein 3, MiaB family, Radical SAM
N288_RS18860	SM00382	ATPases associated with a variety of cellular activities
N288_RS18900	SM00155	Phospholipase D. Active site motifs.
N288_RS18910	SM01234	N288_RS18910
N288_RS18915	SM00947	Carbonic anhydrase
N288_RS18940	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
N288_RS19000	SM00642	Alpha-amylase domain
N288_RS19200	SM00091	PAS domain
N288_RS19200	SM00382	ATPases associated with a variety of cellular activities
N288_RS19205	SM00316	Ribosomal protein S1-like RNA-binding domain
N288_RS19210	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS19220	SM00344	helix_turn_helix ASNC type
N288_RS19255	SM01298	N288_RS19255
N288_RS19260	SM00479	N288_RS19260
N288_RS19515	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
N288_RS19530	SM00052	Putative diguanylate phosphodiesterase
N288_RS19555	SM00729	Elongator protein 3, MiaB family, Radical SAM
N288_RS19580	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS19620	SM00382	ATPases associated with a variety of cellular activities
N288_RS19640	SM00382	ATPases associated with a variety of cellular activities
N288_RS19640	SM00930	N288_RS19640
N288_RS19665	SM00493	N288_RS19665
N288_RS19725	SM00382	ATPases associated with a variety of cellular activities
N288_RS19805	SM00479	N288_RS19805
N288_RS19810	SM00479	N288_RS19810
N288_RS19830	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
N288_RS19830	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
N288_RS19855	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
N288_RS19880	SM00450	Rhodanese Homology Domain
N288_RS19880	SM00849	Metallo-beta-lactamase superfamily
N288_RS19885	SM00450	Rhodanese Homology Domain
N288_RS19890	SM00450	Rhodanese Homology Domain
N288_RS19925	SM00382	ATPases associated with a variety of cellular activities
N288_RS19930	SM00382	ATPases associated with a variety of cellular activities
N288_RS19935	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS19945	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS19945	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS19955	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS19965	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS19965	SM00382	ATPases associated with a variety of cellular activities
N288_RS19970	SM00267	diguanylate cyclase
N288_RS19980	SM00382	ATPases associated with a variety of cellular activities
N288_RS19995	SM00028	Tetratricopeptide repeats
N288_RS19995	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS20010	SM00316	Ribosomal protein S1-like RNA-binding domain
N288_RS20010	SM00357	Cold shock protein domain
N288_RS20010	SM00955	N288_RS20010
N288_RS20030	SM01192	N288_RS20030
N288_RS20030	SM01193	N288_RS20030
N288_RS20050	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
N288_RS20115	SM00028	Tetratricopeptide repeats
N288_RS20195	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS20195	SM00866	N288_RS20195
N288_RS20230	SM00382	ATPases associated with a variety of cellular activities
N288_RS20235	SM00487	DEAD-like helicases superfamily
N288_RS20235	SM00490	helicase superfamily c-terminal domain
N288_RS20265	SM00382	ATPases associated with a variety of cellular activities
N288_RS20265	SM00930	N288_RS20265
N288_RS20270	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
N288_RS20270	SM00091	PAS domain
N288_RS20270	SM00387	Histidine kinase-like ATPases
N288_RS20270	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS20275	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS20305	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
N288_RS20305	SM00245	tail specific protease
N288_RS20325	SM00382	ATPases associated with a variety of cellular activities
N288_RS20350	SM00937	N288_RS20350
N288_RS20355	SM00957	SecA DEAD-like domain
N288_RS20355	SM00958	SecA preprotein cross-linking domain
N288_RS20385	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS20385	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS20490	SM00487	DEAD-like helicases superfamily
N288_RS20490	SM00490	helicase superfamily c-terminal domain
N288_RS20500	SM01131	N288_RS20500
N288_RS20515	SM00421	helix_turn_helix, Lux Regulon
N288_RS20515	SM00448	cheY-homologous receiver domain
N288_RS20520	SM00387	Histidine kinase-like ATPases
N288_RS20535	SM00028	Tetratricopeptide repeats
N288_RS20535	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS20555	SM00957	SecA DEAD-like domain
N288_RS20555	SM00958	SecA preprotein cross-linking domain
N288_RS20675	SM00060	Fibronectin type 3 domain
N288_RS20695	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS20700	SM00028	Tetratricopeptide repeats
N288_RS20700	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS20715	SM00257	Lysin motif
N288_RS20735	SM00642	Alpha-amylase domain
N288_RS20745	SM00642	Alpha-amylase domain
N288_RS20765	SM00354	helix_turn _helix lactose operon repressor
N288_RS20805	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
N288_RS20825	SM00829	Enoylreductase
N288_RS20860	SM00354	helix_turn _helix lactose operon repressor
N288_RS20880	SM00642	Alpha-amylase domain
N288_RS20890	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS20895	SM00631	N288_RS20895
N288_RS20900	SM00257	Lysin motif
N288_RS20935	SM01130	N288_RS20935
N288_RS20975	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS21035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS21035	SM00866	N288_RS21035
N288_RS21135	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS21135	SM00866	N288_RS21135
N288_RS21165	SM00341	Helicase and RNase D C-terminal
N288_RS21170	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
N288_RS21205	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS21205	SM00448	cheY-homologous receiver domain
N288_RS21210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS21210	SM00387	Histidine kinase-like ATPases
N288_RS21315	SM00354	helix_turn _helix lactose operon repressor
N288_RS21370	SM00872	Alpha mannosidase, middle domain
N288_RS21435	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS21435	SM00448	cheY-homologous receiver domain
N288_RS21440	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS21440	SM00387	Histidine kinase-like ATPases
N288_RS21450	SM00327	von Willebrand factor (vWF) type A domain
N288_RS21580	SM00382	ATPases associated with a variety of cellular activities
N288_RS21600	SM00861	Transketolase, pyrimidine binding domain
N288_RS21630	SM00984	UDP binding domain
N288_RS21695	SM00736	Dystroglycan-type cadherin-like domains.
N288_RS21725	SM00984	UDP binding domain
N288_RS21760	SM00635	Bacterial Ig-like domain 2
N288_RS21760	SM00736	Dystroglycan-type cadherin-like domains.
N288_RS21765	SM00635	Bacterial Ig-like domain 2
N288_RS21765	SM00736	Dystroglycan-type cadherin-like domains.
N288_RS21770	SM00047	Lysozyme subfamily 2
N288_RS21785	SM00287	Bacterial SH3 domain homologues
N288_RS21785	SM00646	N288_RS21785
N288_RS21795	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS21805	SM01321	N288_RS21805
N288_RS21825	SM00487	DEAD-like helicases superfamily
N288_RS21825	SM00490	helicase superfamily c-terminal domain
N288_RS21835	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS21900	SM00257	Lysin motif
N288_RS22020	SM00382	ATPases associated with a variety of cellular activities
N288_RS22120	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS22120	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS22125	SM00226	Low molecular weight phosphatase family
N288_RS22160	SM00937	N288_RS22160
N288_RS22180	SM00357	Cold shock protein domain
N288_RS22180	SM00382	ATPases associated with a variety of cellular activities
N288_RS22180	SM00959	Rho termination factor, N-terminal domain
N288_RS22205	SM00448	cheY-homologous receiver domain
N288_RS22270	SM00155	Phospholipase D. Active site motifs.
N288_RS22290	SM00836	DALR anticodon binding domain
N288_RS22290	SM01016	Arginyl tRNA synthetase N terminal dom
N288_RS22335	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
N288_RS22395	SM00986	Uracil DNA glycosylase superfamily
N288_RS22395	SM00987	UreE urease accessory protein, C-terminal domain 
N288_RS22440	SM00382	ATPases associated with a variety of cellular activities
N288_RS22445	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS22445	SM00387	Histidine kinase-like ATPases
N288_RS22445	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS22450	SM00448	cheY-homologous receiver domain
N288_RS22450	SM00862	Transcriptional regulatory protein, C terminal
N288_RS22475	SM00382	ATPases associated with a variety of cellular activities
N288_RS22535	SM00422	helix_turn_helix, mercury resistance
N288_RS22540	SM00382	ATPases associated with a variety of cellular activities
N288_RS22565	SM00984	UDP binding domain
N288_RS22575	SM00642	Alpha-amylase domain
N288_RS22650	SM00450	Rhodanese Homology Domain
N288_RS22665	SM00382	ATPases associated with a variety of cellular activities
N288_RS22675	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS22675	SM00448	cheY-homologous receiver domain
N288_RS22680	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS22690	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS22750	SM01092	CO dehydrogenase flavoprotein C-terminal domain
N288_RS22755	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
N288_RS22770	SM00448	cheY-homologous receiver domain
N288_RS22770	SM00862	Transcriptional regulatory protein, C terminal
N288_RS22775	SM00387	Histidine kinase-like ATPases
N288_RS22780	SM00382	ATPases associated with a variety of cellular activities
N288_RS22835	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
N288_RS22835	SM00419	helix_turn_helix, cAMP Regulatory protein
N288_RS22860	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS22915	SM01060	N288_RS22915
N288_RS23010	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS23010	SM00866	N288_RS23010
N288_RS23025	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS23025	SM00387	Histidine kinase-like ATPases
N288_RS23025	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS23030	SM00448	cheY-homologous receiver domain
N288_RS23030	SM00862	Transcriptional regulatory protein, C terminal
N288_RS23045	SM00387	Histidine kinase-like ATPases
N288_RS23045	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS23050	SM00448	cheY-homologous receiver domain
N288_RS23050	SM00862	Transcriptional regulatory protein, C terminal
N288_RS23085	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS23110	SM00382	ATPases associated with a variety of cellular activities
N288_RS23130	SM00422	helix_turn_helix, mercury resistance
N288_RS23160	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
N288_RS23165	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS23165	SM00866	N288_RS23165
N288_RS23215	SM00382	ATPases associated with a variety of cellular activities
N288_RS23220	SM00345	helix_turn_helix gluconate operon transcriptional repressor
N288_RS23270	SM00342	helix_turn_helix, arabinose operon control protein
N288_RS23270	SM00871	Bacterial transcription activator, effector binding domain
N288_RS23300	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS23385	SM00382	ATPases associated with a variety of cellular activities
N288_RS23435	SM01058	CarD-like/TRCF domain
N288_RS23495	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
N288_RS23495	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS23505	SM00903	Flavin reductase like domain
N288_RS23520	SM00347	helix_turn_helix multiple antibiotic resistance protein
N288_RS23525	SM00867	YceI-like domain 
N288_RS23550	SM00382	ATPases associated with a variety of cellular activities
N288_RS23580	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS23580	SM00387	Histidine kinase-like ATPases
N288_RS23580	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS23585	SM00448	cheY-homologous receiver domain
N288_RS23585	SM00862	Transcriptional regulatory protein, C terminal
N288_RS23635	SM01230	N288_RS23635
N288_RS23660	SM00327	von Willebrand factor (vWF) type A domain
N288_RS23695	SM00100	Cyclic nucleotide-monophosphate binding domain
N288_RS23735	SM00530	Helix-turn-helix XRE-family like proteins 
N288_RS23745	SM00849	Metallo-beta-lactamase superfamily
N288_RS23755	SM00098	Alkaline phosphatase homologues
N288_RS23780	SM00382	ATPases associated with a variety of cellular activities
N288_RS23815	SM00382	ATPases associated with a variety of cellular activities
N288_RS23825	SM00062	Bacterial periplasmic substrate-binding proteins
N288_RS23825	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
N288_RS23850	SM00116	Domain in cystathionine beta-synthase and other proteins.
N288_RS23850	SM00382	ATPases associated with a variety of cellular activities
N288_RS23865	SM00710	Parallel beta-helix repeats
N288_RS23885	SM00382	ATPases associated with a variety of cellular activities
N288_RS23930	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
N288_RS23930	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
N288_RS23940	SM00487	DEAD-like helicases superfamily
N288_RS23940	SM00490	helicase superfamily c-terminal domain
N288_RS23965	SM00448	cheY-homologous receiver domain
N288_RS23965	SM00850	LytTr DNA-binding domain
N288_RS23970	SM00387	Histidine kinase-like ATPases
N288_RS23980	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
N288_RS23985	SM00849	Metallo-beta-lactamase superfamily
N288_RS24000	SM00091	PAS domain
N288_RS24000	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
N288_RS24000	SM00387	Histidine kinase-like ATPases
N288_RS24000	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS24005	SM00448	cheY-homologous receiver domain
N288_RS24005	SM00862	Transcriptional regulatory protein, C terminal
N288_RS24010	SM00257	Lysin motif
N288_RS24010	SM01208	N288_RS24010
N288_RS24040	SM00382	ATPases associated with a variety of cellular activities
N288_RS24045	SM00387	Histidine kinase-like ATPases
N288_RS24045	SM00388	His Kinase A (phosphoacceptor) domain
N288_RS24050	SM00448	cheY-homologous receiver domain
N288_RS24050	SM00862	Transcriptional regulatory protein, C terminal
N288_RS24060	SM00788	Adenylosuccinate synthetase
N288_RS24075	SM00267	diguanylate cyclase
N288_RS24105	SM00014	Acid phosphatase homologues
N288_RS24135	SM00470	ParB-like nuclease domain
N288_RS24150	SM00470	ParB-like nuclease domain
N288_RS24160	SM01228	N288_RS24160
N288_RS24170	SM00393	Putative single-stranded nucleic acids-binding domain
N288_RS24170	SM01245	N288_RS24170
N288_RS24240	SM00860	SMI1 / KNR4 family
N288_RS24255	SM00052	Putative diguanylate phosphodiesterase
N288_RS24255	SM00267	diguanylate cyclase
N288_RS24340	SM00257	Lysin motif
N288_RS24365	SM00278	Helix-hairpin-helix DNA-binding motif class 1
N288_RS24370	SM00382	ATPases associated with a variety of cellular activities
N288_RS24370	SM00843	N288_RS24370
N288_RS24450	SM00710	Parallel beta-helix repeats
