UP15_RS00005 SM00382 ATPases associated with a variety of cellular activities UP15_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain UP15_RS00010 SM00480 DNA polymerase III beta subunit UP15_RS00030 SM00387 Histidine kinase-like ATPases UP15_RS00030 SM00433 TopoisomeraseII UP15_RS00035 SM00434 DNA Topoisomerase IV UP15_RS00070 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_RS00070 SM01240 UP15_RS00070 UP15_RS00075 SM00936 Penicillin-binding protein 5, C-terminal domain UP15_RS00085 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS00105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS00130 SM00257 Lysin motif UP15_RS00130 SM00636 UP15_RS00130 UP15_RS00150 SM00382 ATPases associated with a variety of cellular activities UP15_RS00160 SM00493 UP15_RS00160 UP15_RS00255 SM00465 GIY-YIG type nucleases (URI domain) UP15_RS00265 SM00966 SpoVT / AbrB like domain UP15_RS00280 SM01208 UP15_RS00280 UP15_RS00285 SM00493 UP15_RS00285 UP15_RS00290 SM00650 Ribosomal RNA adenine dimethylases UP15_RS00335 SM01400 UP15_RS00335 UP15_RS00355 SM00487 DEAD-like helicases superfamily UP15_RS00355 SM00490 helicase superfamily c-terminal domain UP15_RS00355 SM00982 UP15_RS00355 UP15_RS00355 SM01058 CarD-like/TRCF domain UP15_RS00360 SM00966 SpoVT / AbrB like domain UP15_RS00375 SM00363 S4 RNA-binding domain UP15_RS00395 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_RS00410 SM00331 Sigma factor PP2C-like phosphatases UP15_RS00410 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP15_RS00420 SM00220 Serine/Threonine protein kinases, catalytic domain UP15_RS00425 SM00977 TilS substrate C-terminal domain UP15_RS00435 SM00382 ATPases associated with a variety of cellular activities UP15_RS00480 SM00905 Dihydroneopterin aldolase UP15_RS00490 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS00595 SM00382 ATPases associated with a variety of cellular activities UP15_RS00595 SM01086 C-terminal, D2-small domain, of ClpB protein UP15_RS00600 SM00382 ATPases associated with a variety of cellular activities UP15_RS00610 SM00670 Large family of predicted nucleotide-binding domains UP15_RS00635 SM00840 UP15_RS00635 UP15_RS00640 SM00535 Ribonuclease III family UP15_RS00645 SM00967 RNA 2'-O ribose methyltransferase substrate binding UP15_RS00665 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. UP15_RS00665 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. UP15_RS00670 SM00649 Ribosomal protein L11/L12 UP15_RS00700 SM00663 RNA polymerase I subunit A N-terminus UP15_RS00720 SM00838 Elongation factor G C-terminus UP15_RS00720 SM00889 Elongation factor G, domain IV UP15_RS00735 SM01403 UP15_RS00735 UP15_RS00755 SM01382 UP15_RS00755 UP15_RS00755 SM01383 UP15_RS00755 UP15_RS00770 SM00322 K homology RNA-binding domain UP15_RS00790 SM01374 UP15_RS00790 UP15_RS00795 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. UP15_RS00855 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_RS00875 SM00662 RNA polymerases D UP15_RS00885 SM00382 ATPases associated with a variety of cellular activities UP15_RS00890 SM00382 ATPases associated with a variety of cellular activities UP15_RS00940 SM00646 UP15_RS00940 UP15_RS00955 SM01251 UP15_RS00955 UP15_RS01100 SM00382 ATPases associated with a variety of cellular activities UP15_RS01110 SM00382 ATPases associated with a variety of cellular activities UP15_RS01145 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS01150 SM00382 ATPases associated with a variety of cellular activities UP15_RS01160 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS01175 SM00342 helix_turn_helix, arabinose operon control protein UP15_RS01225 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_RS01240 SM00825 Beta-ketoacyl synthase UP15_RS01245 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS01260 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP15_RS01285 SM00450 Rhodanese Homology Domain UP15_RS01290 SM00450 Rhodanese Homology Domain UP15_RS01295 SM00450 Rhodanese Homology Domain UP15_RS01295 SM00849 Metallo-beta-lactamase superfamily UP15_RS01310 SM00946 Prolyl-tRNA synthetase, C-terminal UP15_RS01330 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS01360 SM00450 Rhodanese Homology Domain UP15_RS01375 SM01061 CAT RNA binding domain UP15_RS01410 SM00872 Alpha mannosidase, middle domain UP15_RS01515 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS01550 SM00387 Histidine kinase-like ATPases UP15_RS01555 SM00448 cheY-homologous receiver domain UP15_RS01580 SM00387 Histidine kinase-like ATPases UP15_RS01585 SM00448 cheY-homologous receiver domain UP15_RS01585 SM00850 LytTr DNA-binding domain UP15_RS01590 SM00382 ATPases associated with a variety of cellular activities UP15_RS01685 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_RS01685 SM00382 ATPases associated with a variety of cellular activities UP15_RS01730 SM00354 helix_turn _helix lactose operon repressor UP15_RS01830 SM00346 helix_turn_helix isocitrate lyase regulation UP15_RS01840 SM01130 UP15_RS01840 UP15_RS01845 SM00354 helix_turn _helix lactose operon repressor UP15_RS01910 SM00062 Bacterial periplasmic substrate-binding proteins UP15_RS01925 SM00344 helix_turn_helix ASNC type UP15_RS01940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS01940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS01965 SM00382 ATPases associated with a variety of cellular activities UP15_RS01980 SM00823 Phosphopantetheine attachment site UP15_RS01985 SM00823 Phosphopantetheine attachment site UP15_RS01995 SM00822 UP15_RS01995 UP15_RS01995 SM00823 Phosphopantetheine attachment site UP15_RS02000 SM00822 UP15_RS02000 UP15_RS02000 SM00823 Phosphopantetheine attachment site UP15_RS02005 SM00824 Thioesterase UP15_RS02015 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS02050 SM00382 ATPases associated with a variety of cellular activities UP15_RS02060 SM00062 Bacterial periplasmic substrate-binding proteins UP15_RS02080 SM00710 Parallel beta-helix repeats UP15_RS02095 SM00062 Bacterial periplasmic substrate-binding proteins UP15_RS02095 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP15_RS02105 SM00382 ATPases associated with a variety of cellular activities UP15_RS02125 SM00448 cheY-homologous receiver domain UP15_RS02125 SM00862 Transcriptional regulatory protein, C terminal UP15_RS02130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS02130 SM00387 Histidine kinase-like ATPases UP15_RS02130 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS02135 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP15_RS02160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP15_RS02175 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS02225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS02225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS02225 SM01049 UP15_RS02225 UP15_RS02240 SM00900 UP15_RS02240 UP15_RS02265 SM00894 Excalibur calcium-binding domain UP15_RS02310 SM00796 Allophanate hydrolase subunit 1 UP15_RS02315 SM00797 Allophanate hydrolase subunit 2 UP15_RS02320 SM00346 helix_turn_helix isocitrate lyase regulation UP15_RS02380 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS02380 SM00895 UP15_RS02380 UP15_RS02385 SM00342 helix_turn_helix, arabinose operon control protein UP15_RS02395 SM01329 UP15_RS02395 UP15_RS02400 SM00493 UP15_RS02400 UP15_RS02420 SM00267 diguanylate cyclase UP15_RS02500 SM00091 PAS domain UP15_RS02500 SM00387 Histidine kinase-like ATPases UP15_RS02505 SM00448 cheY-homologous receiver domain UP15_RS02525 SM00382 ATPases associated with a variety of cellular activities UP15_RS02565 SM00487 DEAD-like helicases superfamily UP15_RS02565 SM00490 helicase superfamily c-terminal domain UP15_RS02595 SM01005 Alanine racemase, C-terminal domain UP15_RS02625 SM00331 Sigma factor PP2C-like phosphatases UP15_RS02645 SM00331 Sigma factor PP2C-like phosphatases UP15_RS02645 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP15_RS02650 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_RS02650 SM00732 Likely ribonuclease with RNase H fold. UP15_RS02655 SM00731 SprT homologues. UP15_RS02665 SM00861 Transketolase, pyrimidine binding domain UP15_RS02680 SM00382 ATPases associated with a variety of cellular activities UP15_RS02740 SM00357 Cold shock protein domain UP15_RS02745 SM01058 CarD-like/TRCF domain UP15_RS02750 SM00829 Enoylreductase UP15_RS02755 SM00422 helix_turn_helix, mercury resistance UP15_RS02800 SM00870 UP15_RS02800 UP15_RS02820 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS02850 SM00387 Histidine kinase-like ATPases UP15_RS02855 SM00421 helix_turn_helix, Lux Regulon UP15_RS02855 SM00448 cheY-homologous receiver domain UP15_RS02865 SM00850 LytTr DNA-binding domain UP15_RS02910 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS02930 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS03040 SM00382 ATPases associated with a variety of cellular activities UP15_RS03050 SM00881 CoA binding domain UP15_RS03080 SM00883 Chaperonin 10 Kd subunit UP15_RS03090 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS03170 SM00460 Transglutaminase/protease-like homologues UP15_RS03230 SM00342 helix_turn_helix, arabinose operon control protein UP15_RS03235 SM00917 LeuA allosteric (dimerisation) domain UP15_RS03320 SM01001 AIR carboxylase UP15_RS03330 SM00998 Adenylosuccinate lyase C-terminus UP15_RS03345 SM01211 UP15_RS03345 UP15_RS03370 SM00798 AICARFT/IMPCHase bienzyme UP15_RS03370 SM00851 MGS-like domain UP15_RS03375 SM01209 UP15_RS03375 UP15_RS03375 SM01210 UP15_RS03375 UP15_RS03400 SM00882 Coenzyme A transferase UP15_RS03405 SM00882 Coenzyme A transferase UP15_RS03430 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS03460 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP15_RS03460 SM00292 breast cancer carboxy-terminal domain UP15_RS03460 SM00532 Ligase N family UP15_RS03515 SM00822 UP15_RS03515 UP15_RS03515 SM00823 Phosphopantetheine attachment site UP15_RS03515 SM00825 Beta-ketoacyl synthase UP15_RS03515 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP15_RS03515 SM01294 UP15_RS03515 UP15_RS03520 SM00823 Phosphopantetheine attachment site UP15_RS03520 SM01294 UP15_RS03520 UP15_RS03525 SM00822 UP15_RS03525 UP15_RS03525 SM00823 Phosphopantetheine attachment site UP15_RS03525 SM00825 Beta-ketoacyl synthase UP15_RS03525 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP15_RS03530 SM00822 UP15_RS03530 UP15_RS03530 SM00823 Phosphopantetheine attachment site UP15_RS03530 SM00825 Beta-ketoacyl synthase UP15_RS03530 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP15_RS03535 SM00823 Phosphopantetheine attachment site UP15_RS03535 SM00825 Beta-ketoacyl synthase UP15_RS03535 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP15_RS03545 SM00098 Alkaline phosphatase homologues UP15_RS03570 SM00845 GatB domain UP15_RS03590 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP15_RS03615 SM00860 SMI1 / KNR4 family UP15_RS03755 SM00382 ATPases associated with a variety of cellular activities UP15_RS03770 SM00422 helix_turn_helix, mercury resistance UP15_RS03780 SM00382 ATPases associated with a variety of cellular activities UP15_RS03785 SM00487 DEAD-like helicases superfamily UP15_RS03785 SM00490 helicase superfamily c-terminal domain UP15_RS03790 SM00829 Enoylreductase UP15_RS03820 SM00320 WD40 repeats UP15_RS03835 SM00387 Histidine kinase-like ATPases UP15_RS03840 SM00448 cheY-homologous receiver domain UP15_RS03855 SM00631 UP15_RS03855 UP15_RS03925 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS03925 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS03940 SM00642 Alpha-amylase domain UP15_RS03945 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS03945 SM00866 UP15_RS03945 UP15_RS03975 SM00226 Low molecular weight phosphatase family UP15_RS04055 SM00478 endonuclease III UP15_RS04090 SM00422 helix_turn_helix, mercury resistance UP15_RS04090 SM00871 Bacterial transcription activator, effector binding domain UP15_RS04180 SM00342 helix_turn_helix, arabinose operon control protein UP15_RS04190 SM00382 ATPases associated with a variety of cellular activities UP15_RS04215 SM00829 Enoylreductase UP15_RS04230 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS04250 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS04315 SM00835 Cupin UP15_RS04335 SM00478 endonuclease III UP15_RS04365 SM00382 ATPases associated with a variety of cellular activities UP15_RS04370 SM00382 ATPases associated with a variety of cellular activities UP15_RS04375 SM00382 ATPases associated with a variety of cellular activities UP15_RS04535 SM00855 Phosphoglycerate mutase family UP15_RS04585 SM00382 ATPases associated with a variety of cellular activities UP15_RS04590 SM00062 Bacterial periplasmic substrate-binding proteins UP15_RS04610 SM00382 ATPases associated with a variety of cellular activities UP15_RS04645 SM00567 E-Z type HEAT repeats UP15_RS04660 SM00763 PrkA AAA domain UP15_RS04690 SM00357 Cold shock protein domain UP15_RS04725 SM00138 Methyltransferase, chemotaxis proteins UP15_RS04725 SM00387 Histidine kinase-like ATPases UP15_RS04725 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS04730 SM00318 Staphylococcal nuclease homologues UP15_RS04810 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP15_RS04815 SM00421 helix_turn_helix, Lux Regulon UP15_RS04815 SM00448 cheY-homologous receiver domain UP15_RS04830 SM01060 UP15_RS04830 UP15_RS04850 SM00098 Alkaline phosphatase homologues UP15_RS04855 SM00257 Lysin motif UP15_RS04875 SM00563 Phosphate acyltransferases UP15_RS04880 SM01091 Transporter associated domain UP15_RS04890 SM01091 Transporter associated domain UP15_RS04940 SM00382 ATPases associated with a variety of cellular activities UP15_RS04945 SM00382 ATPases associated with a variety of cellular activities UP15_RS04965 SM00382 ATPases associated with a variety of cellular activities UP15_RS05005 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_RS05050 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_RS05080 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS05110 SM00382 ATPases associated with a variety of cellular activities UP15_RS05185 SM00849 Metallo-beta-lactamase superfamily UP15_RS05215 SM00855 Phosphoglycerate mutase family UP15_RS05220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS05235 SM00914 UP15_RS05235 UP15_RS05245 SM01119 UP15_RS05245 UP15_RS05255 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS05280 SM00382 ATPases associated with a variety of cellular activities UP15_RS05450 SM00342 helix_turn_helix, arabinose operon control protein UP15_RS05485 SM01006 Siderophore biosynthesis protein domain UP15_RS05510 SM01018 B12 binding domain UP15_RS05525 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_RS05535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS05535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS05590 SM00859 Semialdehyde dehydrogenase, NAD binding domain UP15_RS05610 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain UP15_RS05615 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP15_RS05670 SM00825 Beta-ketoacyl synthase UP15_RS05680 SM00382 ATPases associated with a variety of cellular activities UP15_RS05685 SM00382 ATPases associated with a variety of cellular activities UP15_RS05735 SM00382 ATPases associated with a variety of cellular activities UP15_RS05740 SM00382 ATPases associated with a variety of cellular activities UP15_RS05770 SM00155 Phospholipase D. Active site motifs. UP15_RS05800 SM01118 UP15_RS05800 UP15_RS05810 SM00954 Region found in RelA / SpoT proteins UP15_RS06005 SM01059 Chloramphenicol acetyltransferase UP15_RS06025 SM00860 SMI1 / KNR4 family UP15_RS06095 SM01005 Alanine racemase, C-terminal domain UP15_RS06100 SM00829 Enoylreductase UP15_RS06110 SM00612 UP15_RS06110 UP15_RS06130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS06150 SM00257 Lysin motif UP15_RS06150 SM00644 UP15_RS06150 UP15_RS06175 SM01022 UP15_RS06175 UP15_RS06200 SM00382 ATPases associated with a variety of cellular activities UP15_RS06225 SM00829 Enoylreductase UP15_RS06235 SM00861 Transketolase, pyrimidine binding domain UP15_RS06240 SM01059 Chloramphenicol acetyltransferase UP15_RS06280 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_RS06305 SM00382 ATPases associated with a variety of cellular activities UP15_RS06320 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain UP15_RS06330 SM00382 ATPases associated with a variety of cellular activities UP15_RS06365 SM00342 helix_turn_helix, arabinose operon control protein UP15_RS06390 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP15_RS06400 SM00028 Tetratricopeptide repeats UP15_RS06415 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS06445 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS06450 SM00448 cheY-homologous receiver domain UP15_RS06450 SM00862 Transcriptional regulatory protein, C terminal UP15_RS06455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS06455 SM00387 Histidine kinase-like ATPases UP15_RS06455 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS06490 SM00422 helix_turn_helix, mercury resistance UP15_RS06500 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS06505 SM00052 Putative diguanylate phosphodiesterase UP15_RS06505 SM00267 diguanylate cyclase UP15_RS06565 SM00091 PAS domain UP15_RS06565 SM00387 Histidine kinase-like ATPases UP15_RS06565 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS06600 SM01007 Class II Aldolase and Adducin N-terminal domain UP15_RS06615 SM00387 Histidine kinase-like ATPases UP15_RS06615 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS06620 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS06635 SM00382 ATPases associated with a variety of cellular activities UP15_RS06635 SM01086 C-terminal, D2-small domain, of ClpB protein UP15_RS06705 SM00354 helix_turn _helix lactose operon repressor UP15_RS06710 SM01061 CAT RNA binding domain UP15_RS06740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS06740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS06765 SM00091 PAS domain UP15_RS06765 SM00387 Histidine kinase-like ATPases UP15_RS06765 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS06790 SM00260 Two component signalling adaptor domain UP15_RS06790 SM00448 cheY-homologous receiver domain UP15_RS06810 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS06815 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS06860 SM00382 ATPases associated with a variety of cellular activities UP15_RS06985 SM00710 Parallel beta-helix repeats UP15_RS07015 SM00644 UP15_RS07015 UP15_RS07025 SM00028 Tetratricopeptide repeats UP15_RS07045 SM00257 Lysin motif UP15_RS07060 SM00052 Putative diguanylate phosphodiesterase UP15_RS07165 SM00852 Probable molybdopterin binding domain UP15_RS07200 SM00382 ATPases associated with a variety of cellular activities UP15_RS07210 SM00420 helix_turn_helix, Deoxyribose operon repressor UP15_RS07210 SM01134 UP15_RS07210 UP15_RS07235 SM00382 ATPases associated with a variety of cellular activities UP15_RS07250 SM00966 SpoVT / AbrB like domain UP15_RS07255 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP15_RS07255 SM00091 PAS domain UP15_RS07255 SM00387 Histidine kinase-like ATPases UP15_RS07255 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS07275 SM00849 Metallo-beta-lactamase superfamily UP15_RS07310 SM00861 Transketolase, pyrimidine binding domain UP15_RS07385 SM00838 Elongation factor G C-terminus UP15_RS07410 SM00670 Large family of predicted nucleotide-binding domains UP15_RS07435 SM00878 Biotin carboxylase C-terminal domain UP15_RS07485 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_RS07540 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_RS07560 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains UP15_RS07595 SM00740 UP15_RS07595 UP15_RS07600 SM00740 UP15_RS07600 UP15_RS07655 SM00842 Cell division protein FtsA UP15_RS07660 SM00864 Tubulin/FtsZ family, GTPase domain UP15_RS07660 SM00865 Tubulin/FtsZ family, C-terminal domain UP15_RS07690 SM00858 UP15_RS07690 UP15_RS07715 SM00382 ATPases associated with a variety of cellular activities UP15_RS07745 SM00363 S4 RNA-binding domain UP15_RS07770 SM00363 S4 RNA-binding domain UP15_RS07795 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain UP15_RS07800 SM00851 MGS-like domain UP15_RS07800 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP15_RS07800 SM01209 UP15_RS07800 UP15_RS07815 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family UP15_RS07865 SM00831 Cation transporter/ATPase, N-terminus UP15_RS07880 SM00072 Guanylate kinase homologues. UP15_RS07885 SM01409 UP15_RS07885 UP15_RS07895 SM00487 DEAD-like helicases superfamily UP15_RS07895 SM00490 helicase superfamily c-terminal domain UP15_RS07920 SM00331 Sigma factor PP2C-like phosphatases UP15_RS07920 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP15_RS07925 SM00220 Serine/Threonine protein kinases, catalytic domain UP15_RS07925 SM00740 UP15_RS07925 UP15_RS07940 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain UP15_RS07960 SM01120 UP15_RS07960 UP15_RS07960 SM01121 UP15_RS07960 UP15_RS07975 SM00487 DEAD-like helicases superfamily UP15_RS07975 SM00490 helicase superfamily c-terminal domain UP15_RS07990 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP15_RS07995 SM00822 UP15_RS07995 UP15_RS08005 SM00358 Double-stranded RNA binding motif UP15_RS08005 SM00535 Ribonuclease III family UP15_RS08010 SM00968 SMC proteins Flexible Hinge Domain UP15_RS08015 SM00382 ATPases associated with a variety of cellular activities UP15_RS08015 SM00962 SRP54-type protein, GTPase domain UP15_RS08015 SM00963 SRP54-type protein, helical bundle domain UP15_RS08025 SM00382 ATPases associated with a variety of cellular activities UP15_RS08025 SM00962 SRP54-type protein, GTPase domain UP15_RS08025 SM00963 SRP54-type protein, helical bundle domain UP15_RS08085 SM00881 CoA binding domain UP15_RS08095 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain UP15_RS08095 SM00437 Bacterial DNA topoisomerase I DNA-binding domain UP15_RS08095 SM00493 UP15_RS08095 UP15_RS08115 SM00382 ATPases associated with a variety of cellular activities UP15_RS08115 SM01086 C-terminal, D2-small domain, of ClpB protein UP15_RS08155 SM00382 ATPases associated with a variety of cellular activities UP15_RS08205 SM00448 cheY-homologous receiver domain UP15_RS08240 SM00962 SRP54-type protein, GTPase domain UP15_RS08250 SM00448 cheY-homologous receiver domain UP15_RS08255 SM00073 Histidine Phosphotransfer domain UP15_RS08255 SM00260 Two component signalling adaptor domain UP15_RS08255 SM00387 Histidine kinase-like ATPases UP15_RS08255 SM01231 UP15_RS08255 UP15_RS08260 SM00260 Two component signalling adaptor domain UP15_RS08320 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_RS08330 SM00479 UP15_RS08330 UP15_RS08330 SM00481 DNA polymerase alpha chain like domain UP15_RS08335 SM01067 Cellulose binding domain UP15_RS08345 SM00633 Glycosyl hydrolase family 10 UP15_RS08360 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_RS08360 SM00322 K homology RNA-binding domain UP15_RS08395 SM00904 Riboflavin kinase UP15_RS08400 SM01387 UP15_RS08400 UP15_RS08405 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_RS08405 SM00322 K homology RNA-binding domain UP15_RS08440 SM00859 Semialdehyde dehydrogenase, NAD binding domain UP15_RS08450 SM01130 UP15_RS08450 UP15_RS08455 SM00849 Metallo-beta-lactamase superfamily UP15_RS08470 SM00382 ATPases associated with a variety of cellular activities UP15_RS08470 SM00843 UP15_RS08470 UP15_RS08475 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS08475 SM00866 UP15_RS08475 UP15_RS08500 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS08535 SM00852 Probable molybdopterin binding domain UP15_RS08540 SM00382 ATPases associated with a variety of cellular activities UP15_RS08545 SM00322 K homology RNA-binding domain UP15_RS08545 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_RS08565 SM00829 Enoylreductase UP15_RS08580 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_RS08595 SM00533 DNA-binding domain of DNA mismatch repair MUTS family UP15_RS08595 SM00534 ATPase domain of DNA mismatch repair MUTS family UP15_RS08600 SM00853 MutL C terminal dimerisation domain UP15_RS08600 SM01340 UP15_RS08600 UP15_RS08625 SM01058 CarD-like/TRCF domain UP15_RS08640 SM00028 Tetratricopeptide repeats UP15_RS08725 SM00646 UP15_RS08725 UP15_RS08730 SM00382 ATPases associated with a variety of cellular activities UP15_RS08745 SM00422 helix_turn_helix, mercury resistance UP15_RS08750 SM01230 UP15_RS08750 UP15_RS08765 SM00860 SMI1 / KNR4 family UP15_RS08785 SM00506 Appr-1"-p processing enzyme UP15_RS08830 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen UP15_RS08905 SM00020 Trypsin-like serine protease UP15_RS08940 SM00257 Lysin motif UP15_RS08945 SM00857 Resolvase, N terminal domain UP15_RS08955 SM00861 Transketolase, pyrimidine binding domain UP15_RS09040 SM01207 UP15_RS09040 UP15_RS09045 SM00881 CoA binding domain UP15_RS09050 SM00387 Histidine kinase-like ATPases UP15_RS09050 SM00433 TopoisomeraseII UP15_RS09055 SM00434 DNA Topoisomerase IV UP15_RS09070 SM01329 UP15_RS09070 UP15_RS09075 SM01266 UP15_RS09075 UP15_RS09080 SM00226 Low molecular weight phosphatase family UP15_RS09090 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP15_RS09180 SM00422 helix_turn_helix, mercury resistance UP15_RS09190 SM00387 Histidine kinase-like ATPases UP15_RS09190 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS09195 SM00448 cheY-homologous receiver domain UP15_RS09195 SM00862 Transcriptional regulatory protein, C terminal UP15_RS09205 SM00606 Cellulose Binding Domain Type IV UP15_RS09235 SM00354 helix_turn _helix lactose operon repressor UP15_RS09290 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS09325 SM00155 Phospholipase D. Active site motifs. UP15_RS09335 SM00100 Cyclic nucleotide-monophosphate binding domain UP15_RS09395 SM00878 Biotin carboxylase C-terminal domain UP15_RS09420 SM00420 helix_turn_helix, Deoxyribose operon repressor UP15_RS09420 SM01134 UP15_RS09420 UP15_RS09535 SM00926 Molybdopterin oxidoreductase Fe4S4 domain UP15_RS09565 SM00382 ATPases associated with a variety of cellular activities UP15_RS09570 SM00382 ATPases associated with a variety of cellular activities UP15_RS09575 SM00422 helix_turn_helix, mercury resistance UP15_RS09590 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP15_RS09605 SM00926 Molybdopterin oxidoreductase Fe4S4 domain UP15_RS09670 SM00849 Metallo-beta-lactamase superfamily UP15_RS09675 SM00871 Bacterial transcription activator, effector binding domain UP15_RS09690 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP15_RS09730 SM00257 Lysin motif UP15_RS09735 SM00341 Helicase and RNase D C-terminal UP15_RS09735 SM00487 DEAD-like helicases superfamily UP15_RS09735 SM00490 helicase superfamily c-terminal domain UP15_RS09735 SM00956 UP15_RS09735 UP15_RS09795 SM00861 Transketolase, pyrimidine binding domain UP15_RS09800 SM00327 von Willebrand factor (vWF) type A domain UP15_RS09805 SM00382 ATPases associated with a variety of cellular activities UP15_RS09815 SM00257 Lysin motif UP15_RS09880 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_RS09880 SM00245 tail specific protease UP15_RS09910 SM00014 Acid phosphatase homologues UP15_RS09935 SM00091 PAS domain UP15_RS09935 SM00382 ATPases associated with a variety of cellular activities UP15_RS09980 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS10085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_RS10120 SM00357 Cold shock protein domain UP15_RS10155 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs UP15_RS10155 SM00475 5'-3' exonuclease UP15_RS10210 SM00491 UP15_RS10210 UP15_RS10220 SM00981 UP15_RS10220 UP15_RS10245 SM00487 DEAD-like helicases superfamily UP15_RS10245 SM00490 helicase superfamily c-terminal domain UP15_RS10305 SM00478 endonuclease III UP15_RS10305 SM00525 UP15_RS10305 UP15_RS10325 SM00479 UP15_RS10325 UP15_RS10325 SM00491 UP15_RS10325 UP15_RS10365 SM00851 MGS-like domain UP15_RS10415 SM00914 UP15_RS10415 UP15_RS10420 SM00028 Tetratricopeptide repeats UP15_RS10485 SM00138 Methyltransferase, chemotaxis proteins UP15_RS10490 SM00562 UP15_RS10490 UP15_RS10520 SM00411 bacterial (prokaryotic) histone like domain UP15_RS10565 SM01240 UP15_RS10565 UP15_RS10570 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_RS10610 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP15_RS10630 SM00257 Lysin motif UP15_RS10640 SM00487 DEAD-like helicases superfamily UP15_RS10640 SM00490 helicase superfamily c-terminal domain UP15_RS10665 SM00257 Lysin motif UP15_RS10680 SM00091 PAS domain UP15_RS10680 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS10680 SM00387 Histidine kinase-like ATPases UP15_RS10680 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS10685 SM00448 cheY-homologous receiver domain UP15_RS10685 SM00862 Transcriptional regulatory protein, C terminal UP15_RS10705 SM00363 S4 RNA-binding domain UP15_RS10840 SM00387 Histidine kinase-like ATPases UP15_RS10850 SM00936 Penicillin-binding protein 5, C-terminal domain UP15_RS10925 SM00028 Tetratricopeptide repeats UP15_RS10995 SM00849 Metallo-beta-lactamase superfamily UP15_RS11015 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_RS11050 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS11050 SM00866 UP15_RS11050 UP15_RS11090 SM01350 UP15_RS11090 UP15_RS11110 SM00260 Two component signalling adaptor domain UP15_RS11140 SM00382 ATPases associated with a variety of cellular activities UP15_RS11150 SM00062 Bacterial periplasmic substrate-binding proteins UP15_RS11150 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP15_RS11160 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP15_RS11175 SM00861 Transketolase, pyrimidine binding domain UP15_RS11195 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP15_RS11205 SM00091 PAS domain UP15_RS11205 SM00382 ATPases associated with a variety of cellular activities UP15_RS11225 SM00448 cheY-homologous receiver domain UP15_RS11230 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_RS11245 SM00363 S4 RNA-binding domain UP15_RS11250 SM00861 Transketolase, pyrimidine binding domain UP15_RS11285 SM00878 Biotin carboxylase C-terminal domain UP15_RS11330 SM00382 ATPases associated with a variety of cellular activities UP15_RS11340 SM00841 Elongation factor P, C-terminal UP15_RS11340 SM01185 UP15_RS11340 UP15_RS11375 SM00529 Helix-turn-helix diphteria tox regulatory element UP15_RS11385 SM00450 Rhodanese Homology Domain UP15_RS11405 SM00487 DEAD-like helicases superfamily UP15_RS11405 SM00490 helicase superfamily c-terminal domain UP15_RS11415 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS11475 SM00382 ATPases associated with a variety of cellular activities UP15_RS11500 SM00849 Metallo-beta-lactamase superfamily UP15_RS11515 SM00631 UP15_RS11515 UP15_RS11535 SM00028 Tetratricopeptide repeats UP15_RS11570 SM00382 ATPases associated with a variety of cellular activities UP15_RS11575 SM00382 ATPases associated with a variety of cellular activities UP15_RS11660 SM00382 ATPases associated with a variety of cellular activities UP15_RS11675 SM00518 AP endonuclease family 2 UP15_RS11680 SM00487 DEAD-like helicases superfamily UP15_RS11680 SM00490 helicase superfamily c-terminal domain UP15_RS11715 SM00400 zinc finger UP15_RS11715 SM00493 UP15_RS11715 UP15_RS11730 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_RS11770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_RS11790 SM00953 UP15_RS11790 UP15_RS11825 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_RS11840 SM00271 DnaJ molecular chaperone homology domain UP15_RS11860 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_RS11865 SM00838 Elongation factor G C-terminus UP15_RS11895 SM00849 Metallo-beta-lactamase superfamily UP15_RS11905 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP15_RS11925 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_RS11935 SM01103 UP15_RS11935 UP15_RS11970 SM00028 Tetratricopeptide repeats UP15_RS11980 SM00857 Resolvase, N terminal domain UP15_RS11995 SM00860 SMI1 / KNR4 family UP15_RS12020 SM00644 UP15_RS12020 UP15_RS12080 SM00257 Lysin motif UP15_RS12175 SM00470 ParB-like nuclease domain UP15_RS12285 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS12290 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS12375 SM00382 ATPases associated with a variety of cellular activities UP15_RS12405 SM01007 Class II Aldolase and Adducin N-terminal domain UP15_RS12415 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS12425 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS12440 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family UP15_RS12490 SM00382 ATPases associated with a variety of cellular activities UP15_RS12495 SM00062 Bacterial periplasmic substrate-binding proteins UP15_RS12515 SM00829 Enoylreductase UP15_RS12555 SM00382 ATPases associated with a variety of cellular activities UP15_RS12660 SM00732 Likely ribonuclease with RNase H fold. UP15_RS12670 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain UP15_RS12680 SM00382 ATPases associated with a variety of cellular activities UP15_RS12685 SM00062 Bacterial periplasmic substrate-binding proteins UP15_RS12685 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP15_RS12715 SM00028 Tetratricopeptide repeats UP15_RS12735 SM00382 ATPases associated with a variety of cellular activities UP15_RS12760 SM00287 Bacterial SH3 domain homologues UP15_RS12760 SM00646 UP15_RS12760 UP15_RS12770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_RS12770 SM00954 Region found in RelA / SpoT proteins UP15_RS12820 SM01323 UP15_RS12820 UP15_RS12840 SM00382 ATPases associated with a variety of cellular activities UP15_RS12845 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP15_RS12880 SM00257 Lysin motif UP15_RS12925 SM01317 UP15_RS12925 UP15_RS13020 SM00257 Lysin motif UP15_RS13030 SM01004 Delta-aminolevulinic acid dehydratase UP15_RS13075 SM00382 ATPases associated with a variety of cellular activities UP15_RS13075 SM00464 Found in ATP-dependent protease La (LON) UP15_RS13080 SM00382 ATPases associated with a variety of cellular activities UP15_RS13085 SM00382 ATPases associated with a variety of cellular activities UP15_RS13085 SM00994 ClpX C4-type zinc finger UP15_RS13085 SM01086 C-terminal, D2-small domain, of ClpB protein UP15_RS13110 SM01329 UP15_RS13110 UP15_RS13115 SM00917 LeuA allosteric (dimerisation) domain UP15_RS13190 SM00857 Resolvase, N terminal domain UP15_RS13205 SM00487 DEAD-like helicases superfamily UP15_RS13205 SM00490 helicase superfamily c-terminal domain UP15_RS13235 SM00909 Sporulation and spore germination UP15_RS13245 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS13250 SM00421 helix_turn_helix, Lux Regulon UP15_RS13305 SM00465 GIY-YIG type nucleases (URI domain) UP15_RS13315 SM00813 Alpha-L-arabinofuranosidase C-terminus UP15_RS13320 SM00893 Electron transfer flavoprotein domain UP15_RS13325 SM00893 Electron transfer flavoprotein domain UP15_RS13355 SM00463 Small MutS-related domain UP15_RS13355 SM00533 DNA-binding domain of DNA mismatch repair MUTS family UP15_RS13355 SM00534 ATPase domain of DNA mismatch repair MUTS family UP15_RS13360 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP15_RS13360 SM00481 DNA polymerase alpha chain like domain UP15_RS13360 SM00483 DNA polymerase X family UP15_RS13380 SM00873 B3/4 domain UP15_RS13380 SM00874 tRNA synthetase B5 domain UP15_RS13380 SM00896 Ferredoxin-fold anticodon binding domain UP15_RS13390 SM00967 RNA 2'-O ribose methyltransferase substrate binding UP15_RS13445 SM00448 cheY-homologous receiver domain UP15_RS13445 SM00850 LytTr DNA-binding domain UP15_RS13450 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP15_RS13450 SM00387 Histidine kinase-like ATPases UP15_RS13460 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP15_RS13460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS13465 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain UP15_RS13480 SM00382 ATPases associated with a variety of cellular activities UP15_RS13505 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP15_RS13520 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain UP15_RS13520 SM01232 UP15_RS13520 UP15_RS13525 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs UP15_RS13525 SM00474 3'-5' exonuclease UP15_RS13525 SM00475 5'-3' exonuclease UP15_RS13525 SM00482 DNA polymerase A domain UP15_RS13530 SM00387 Histidine kinase-like ATPases UP15_RS13530 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS13535 SM00448 cheY-homologous receiver domain UP15_RS13535 SM00862 Transcriptional regulatory protein, C terminal UP15_RS13545 SM01329 UP15_RS13545 UP15_RS13590 SM00919 Malic enzyme, NAD binding domain UP15_RS13590 SM01274 UP15_RS13590 UP15_RS13595 SM00481 DNA polymerase alpha chain like domain UP15_RS13625 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_RS13630 SM00849 Metallo-beta-lactamase superfamily UP15_RS13655 SM00852 Probable molybdopterin binding domain UP15_RS13700 SM00487 DEAD-like helicases superfamily UP15_RS13700 SM00490 helicase superfamily c-terminal domain UP15_RS13715 SM00421 helix_turn_helix, Lux Regulon UP15_RS13715 SM00448 cheY-homologous receiver domain UP15_RS13725 SM00448 cheY-homologous receiver domain UP15_RS13725 SM00862 Transcriptional regulatory protein, C terminal UP15_RS13730 SM00387 Histidine kinase-like ATPases UP15_RS13745 SM00382 ATPases associated with a variety of cellular activities UP15_RS13765 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS13790 SM00981 UP15_RS13790 UP15_RS13825 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP15_RS13830 SM00363 S4 RNA-binding domain UP15_RS13830 SM01390 UP15_RS13830 UP15_RS13860 SM00363 S4 RNA-binding domain UP15_RS13875 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_RS13885 SM00354 helix_turn _helix lactose operon repressor UP15_RS13890 SM00830 Chorismate mutase type II UP15_RS13915 SM00382 ATPases associated with a variety of cellular activities UP15_RS13915 SM00843 UP15_RS13915 UP15_RS13955 SM00919 Malic enzyme, NAD binding domain UP15_RS13955 SM01274 UP15_RS13955 UP15_RS13960 SM00849 Metallo-beta-lactamase superfamily UP15_RS13980 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP15_RS14015 SM00420 helix_turn_helix, Deoxyribose operon repressor UP15_RS14020 SM00363 S4 RNA-binding domain UP15_RS14055 SM00450 Rhodanese Homology Domain UP15_RS14085 SM00342 helix_turn_helix, arabinose operon control protein UP15_RS14135 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP15_RS14135 SM00091 PAS domain UP15_RS14155 SM00382 ATPases associated with a variety of cellular activities UP15_RS14165 SM00382 ATPases associated with a variety of cellular activities UP15_RS14170 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS14195 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_RS14260 SM00563 Phosphate acyltransferases UP15_RS14275 SM00382 ATPases associated with a variety of cellular activities UP15_RS14335 SM01234 UP15_RS14335 UP15_RS14340 SM00947 Carbonic anhydrase UP15_RS14370 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain UP15_RS14555 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS14570 SM00244 prohibitin homologues UP15_RS14610 SM00644 UP15_RS14610 UP15_RS14700 SM00257 Lysin motif UP15_RS14775 SM00421 helix_turn_helix, Lux Regulon UP15_RS14795 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS14800 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS14810 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_RS14810 SM00876 Biotin and Thiamin Synthesis associated domain UP15_RS14845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS14845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS14845 SM00319 Homologues of the ligand binding domain of Tar UP15_RS14850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS14850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS14855 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS14855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS14855 SM00319 Homologues of the ligand binding domain of Tar UP15_RS14860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS14860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS14860 SM00319 Homologues of the ligand binding domain of Tar UP15_RS14885 SM01091 Transporter associated domain UP15_RS14935 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_RS14945 SM00344 helix_turn_helix ASNC type UP15_RS14965 SM00387 Histidine kinase-like ATPases UP15_RS14965 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS14970 SM01298 UP15_RS14970 UP15_RS14975 SM00479 UP15_RS14975 UP15_RS15000 SM00387 Histidine kinase-like ATPases UP15_RS15005 SM00448 cheY-homologous receiver domain UP15_RS15015 SM00382 ATPases associated with a variety of cellular activities UP15_RS15085 SM00421 helix_turn_helix, Lux Regulon UP15_RS15085 SM00448 cheY-homologous receiver domain UP15_RS15090 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_RS15090 SM00387 Histidine kinase-like ATPases UP15_RS15110 SM00052 Putative diguanylate phosphodiesterase UP15_RS15160 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_RS15205 SM01002 Alanine dehydrogenase/PNT, C-terminal domain UP15_RS15205 SM01003 Alanine dehydrogenase/PNT, N-terminal domain UP15_RS15260 SM00422 helix_turn_helix, mercury resistance UP15_RS15360 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_RS15405 SM00835 Cupin UP15_RS15460 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS15465 SM00448 cheY-homologous receiver domain UP15_RS15465 SM00862 Transcriptional regulatory protein, C terminal UP15_RS15515 SM00382 ATPases associated with a variety of cellular activities UP15_RS15535 SM00382 ATPases associated with a variety of cellular activities UP15_RS15535 SM00930 UP15_RS15535 UP15_RS15550 SM00493 UP15_RS15550 UP15_RS15600 SM00382 ATPases associated with a variety of cellular activities UP15_RS15615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_RS15620 SM00448 cheY-homologous receiver domain UP15_RS15620 SM00862 Transcriptional regulatory protein, C terminal UP15_RS15625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS15625 SM00387 Histidine kinase-like ATPases UP15_RS15625 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS15660 SM00421 helix_turn_helix, Lux Regulon UP15_RS15660 SM00448 cheY-homologous receiver domain UP15_RS15665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS15665 SM00387 Histidine kinase-like ATPases UP15_RS15695 SM00382 ATPases associated with a variety of cellular activities UP15_RS15710 SM00710 Parallel beta-helix repeats UP15_RS15715 SM00858 UP15_RS15715 UP15_RS15725 SM00354 helix_turn _helix lactose operon repressor UP15_RS15735 SM00387 Histidine kinase-like ATPases UP15_RS15735 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS15740 SM00448 cheY-homologous receiver domain UP15_RS15740 SM00862 Transcriptional regulatory protein, C terminal UP15_RS15745 SM00382 ATPases associated with a variety of cellular activities UP15_RS15775 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS15835 SM00382 ATPases associated with a variety of cellular activities UP15_RS15860 SM00448 cheY-homologous receiver domain UP15_RS15865 SM00387 Histidine kinase-like ATPases UP15_RS15900 SM00267 diguanylate cyclase UP15_RS15925 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_RS15925 SM00357 Cold shock protein domain UP15_RS15925 SM00955 UP15_RS15925 UP15_RS15940 SM00966 SpoVT / AbrB like domain UP15_RS15945 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS15950 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS15955 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS15980 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_RS15980 SM00382 ATPases associated with a variety of cellular activities UP15_RS16020 SM00382 ATPases associated with a variety of cellular activities UP15_RS16030 SM01192 UP15_RS16030 UP15_RS16030 SM01193 UP15_RS16030 UP15_RS16050 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP15_RS16070 SM00382 ATPases associated with a variety of cellular activities UP15_RS16075 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS16075 SM00895 UP15_RS16075 UP15_RS16095 SM00382 ATPases associated with a variety of cellular activities UP15_RS16100 SM00382 ATPases associated with a variety of cellular activities UP15_RS16185 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS16215 SM00382 ATPases associated with a variety of cellular activities UP15_RS16220 SM00382 ATPases associated with a variety of cellular activities UP15_RS16225 SM00382 ATPases associated with a variety of cellular activities UP15_RS16285 SM00947 Carbonic anhydrase UP15_RS16340 SM00028 Tetratricopeptide repeats UP15_RS16435 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS16435 SM00866 UP15_RS16435 UP15_RS16470 SM00382 ATPases associated with a variety of cellular activities UP15_RS16475 SM00487 DEAD-like helicases superfamily UP15_RS16475 SM00490 helicase superfamily c-terminal domain UP15_RS16505 SM00448 cheY-homologous receiver domain UP15_RS16505 SM00862 Transcriptional regulatory protein, C terminal UP15_RS16510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS16510 SM00387 Histidine kinase-like ATPases UP15_RS16510 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS16540 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_RS16550 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_RS16550 SM00245 tail specific protease UP15_RS16570 SM00382 ATPases associated with a variety of cellular activities UP15_RS16595 SM00937 UP15_RS16595 UP15_RS16600 SM00957 SecA DEAD-like domain UP15_RS16600 SM00958 SecA preprotein cross-linking domain UP15_RS16610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS16610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS16690 SM00487 DEAD-like helicases superfamily UP15_RS16690 SM00490 helicase superfamily c-terminal domain UP15_RS16700 SM00421 helix_turn_helix, Lux Regulon UP15_RS16700 SM00448 cheY-homologous receiver domain UP15_RS16705 SM00387 Histidine kinase-like ATPases UP15_RS16750 SM00984 UDP binding domain UP15_RS16775 SM00646 UP15_RS16775 UP15_RS16780 SM00646 UP15_RS16780 UP15_RS16810 SM00382 ATPases associated with a variety of cellular activities UP15_RS16830 SM00984 UDP binding domain UP15_RS16870 SM00047 Lysozyme subfamily 2 UP15_RS16870 SM00287 Bacterial SH3 domain homologues UP15_RS16895 SM00342 helix_turn_helix, arabinose operon control protein UP15_RS16895 SM00448 cheY-homologous receiver domain UP15_RS16900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS16900 SM00387 Histidine kinase-like ATPases UP15_RS16925 SM00354 helix_turn _helix lactose operon repressor UP15_RS16980 SM00854 Bacterial capsule synthesis protein PGA_cap UP15_RS17010 SM00354 helix_turn _helix lactose operon repressor UP15_RS17025 SM00382 ATPases associated with a variety of cellular activities UP15_RS17040 SM00903 Flavin reductase like domain UP15_RS17060 SM00344 helix_turn_helix ASNC type UP15_RS17075 SM00984 UDP binding domain UP15_RS17085 SM00487 DEAD-like helicases superfamily UP15_RS17085 SM00490 helicase superfamily c-terminal domain UP15_RS17090 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP15_RS17090 SM00091 PAS domain UP15_RS17145 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS17155 SM00014 Acid phosphatase homologues UP15_RS17165 SM00062 Bacterial periplasmic substrate-binding proteins UP15_RS17165 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP15_RS17175 SM00382 ATPases associated with a variety of cellular activities UP15_RS17185 SM00938 Nitrogen regulatory protein P-II UP15_RS17210 SM00833 Cobalamin synthesis protein cobW C-terminal domain UP15_RS17220 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_RS17240 SM00327 von Willebrand factor (vWF) type A domain UP15_RS17245 SM00327 von Willebrand factor (vWF) type A domain UP15_RS17280 SM00382 ATPases associated with a variety of cellular activities UP15_RS17340 SM00226 Low molecular weight phosphatase family UP15_RS17375 SM00937 UP15_RS17375 UP15_RS17390 SM00919 Malic enzyme, NAD binding domain UP15_RS17390 SM01274 UP15_RS17390 UP15_RS17405 SM00357 Cold shock protein domain UP15_RS17405 SM00382 ATPases associated with a variety of cellular activities UP15_RS17405 SM00959 Rho termination factor, N-terminal domain UP15_RS17430 SM00448 cheY-homologous receiver domain UP15_RS17455 SM00382 ATPases associated with a variety of cellular activities UP15_RS17510 SM00155 Phospholipase D. Active site motifs. UP15_RS17535 SM00382 ATPases associated with a variety of cellular activities UP15_RS17540 SM00155 Phospholipase D. Active site motifs. UP15_RS17560 SM00836 DALR anticodon binding domain UP15_RS17560 SM01016 Arginyl tRNA synthetase N terminal dom UP15_RS17645 SM00062 Bacterial periplasmic substrate-binding proteins UP15_RS17655 SM00382 ATPases associated with a variety of cellular activities UP15_RS17665 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_RS17690 SM00028 Tetratricopeptide repeats UP15_RS17700 SM00860 SMI1 / KNR4 family UP15_RS17785 SM00344 helix_turn_helix ASNC type UP15_RS17855 SM00858 UP15_RS17855 UP15_RS17890 SM00835 Cupin UP15_RS17915 SM00986 Uracil DNA glycosylase superfamily UP15_RS17915 SM00987 UreE urease accessory protein, C-terminal domain UP15_RS17935 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS17955 SM00640 Glycosyl hydrolases family 32 UP15_RS17965 SM01061 CAT RNA binding domain UP15_RS18045 SM00342 helix_turn_helix, arabinose operon control protein UP15_RS18085 SM00028 Tetratricopeptide repeats UP15_RS18160 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP15_RS18170 SM00382 ATPases associated with a variety of cellular activities UP15_RS18180 SM00062 Bacterial periplasmic substrate-binding proteins UP15_RS18180 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP15_RS18195 SM00954 Region found in RelA / SpoT proteins UP15_RS18205 SM00382 ATPases associated with a variety of cellular activities UP15_RS18215 SM00710 Parallel beta-helix repeats UP15_RS18270 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP15_RS18290 SM00656 UP15_RS18290 UP15_RS18295 SM00382 ATPases associated with a variety of cellular activities UP15_RS18300 SM00382 ATPases associated with a variety of cellular activities UP15_RS18315 SM00382 ATPases associated with a variety of cellular activities UP15_RS18335 SM00382 ATPases associated with a variety of cellular activities UP15_RS18350 SM00725 NEAr Transporter domain UP15_RS18355 SM00725 NEAr Transporter domain UP15_RS18360 SM00725 NEAr Transporter domain UP15_RS18455 SM00870 UP15_RS18455 UP15_RS18460 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS18465 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS18560 SM01061 CAT RNA binding domain UP15_RS18575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS18585 SM00382 ATPases associated with a variety of cellular activities UP15_RS18635 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_RS18635 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP15_RS18640 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain UP15_RS18650 SM01133 UP15_RS18650 UP15_RS18685 SM00421 helix_turn_helix, Lux Regulon UP15_RS18695 SM00422 helix_turn_helix, mercury resistance UP15_RS18705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP15_RS18705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_RS18775 SM00354 helix_turn _helix lactose operon repressor UP15_RS18820 SM00382 ATPases associated with a variety of cellular activities UP15_RS18850 SM00382 ATPases associated with a variety of cellular activities UP15_RS18890 SM00382 ATPases associated with a variety of cellular activities UP15_RS18900 SM00028 Tetratricopeptide repeats UP15_RS18905 SM01061 CAT RNA binding domain UP15_RS18945 SM00530 Helix-turn-helix XRE-family like proteins UP15_RS18960 SM00354 helix_turn _helix lactose operon repressor UP15_RS19010 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_RS19010 SM00866 UP15_RS19010 UP15_RS19050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS19050 SM00387 Histidine kinase-like ATPases UP15_RS19050 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS19055 SM00448 cheY-homologous receiver domain UP15_RS19055 SM00862 Transcriptional regulatory protein, C terminal UP15_RS19065 SM00849 Metallo-beta-lactamase superfamily UP15_RS19095 SM00382 ATPases associated with a variety of cellular activities UP15_RS19115 SM00382 ATPases associated with a variety of cellular activities UP15_RS19125 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_RS19130 SM00849 Metallo-beta-lactamase superfamily UP15_RS19145 SM00091 PAS domain UP15_RS19145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_RS19145 SM00387 Histidine kinase-like ATPases UP15_RS19145 SM00388 His Kinase A (phosphoacceptor) domain UP15_RS19150 SM00448 cheY-homologous receiver domain UP15_RS19150 SM00862 Transcriptional regulatory protein, C terminal UP15_RS19190 SM00788 Adenylosuccinate synthetase UP15_RS19210 SM00382 ATPases associated with a variety of cellular activities UP15_RS19230 SM00822 UP15_RS19230 UP15_RS19250 SM00823 Phosphopantetheine attachment site UP15_RS19255 SM00923 MbtH-like protein UP15_RS19260 SM00342 helix_turn_helix, arabinose operon control protein UP15_RS19285 SM00267 diguanylate cyclase UP15_RS19295 SM01131 UP15_RS19295 UP15_RS19315 SM01060 UP15_RS19315 UP15_RS19340 SM00382 ATPases associated with a variety of cellular activities UP15_RS19390 SM00470 ParB-like nuclease domain UP15_RS19405 SM00470 ParB-like nuclease domain UP15_RS19415 SM01228 UP15_RS19415 UP15_RS19425 SM00393 Putative single-stranded nucleic acids-binding domain UP15_RS19425 SM01245 UP15_RS19425