UP12_RS00005 SM00382 ATPases associated with a variety of cellular activities UP12_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain UP12_RS00010 SM00480 DNA polymerase III beta subunit UP12_RS00030 SM00387 Histidine kinase-like ATPases UP12_RS00030 SM00433 TopoisomeraseII UP12_RS00035 SM00434 DNA Topoisomerase IV UP12_RS00070 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_RS00070 SM01240 UP12_RS00070 UP12_RS00075 SM00936 Penicillin-binding protein 5, C-terminal domain UP12_RS00080 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS00100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS00120 SM00257 Lysin motif UP12_RS00120 SM00636 UP12_RS00120 UP12_RS00140 SM00382 ATPases associated with a variety of cellular activities UP12_RS00150 SM00493 UP12_RS00150 UP12_RS00245 SM00465 GIY-YIG type nucleases (URI domain) UP12_RS00255 SM00966 SpoVT / AbrB like domain UP12_RS00270 SM01208 UP12_RS00270 UP12_RS00275 SM00493 UP12_RS00275 UP12_RS00280 SM00650 Ribosomal RNA adenine dimethylases UP12_RS00325 SM01400 UP12_RS00325 UP12_RS00345 SM00487 DEAD-like helicases superfamily UP12_RS00345 SM00490 helicase superfamily c-terminal domain UP12_RS00345 SM00982 UP12_RS00345 UP12_RS00345 SM01058 CarD-like/TRCF domain UP12_RS00350 SM00966 SpoVT / AbrB like domain UP12_RS00365 SM00363 S4 RNA-binding domain UP12_RS00385 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_RS00400 SM00331 Sigma factor PP2C-like phosphatases UP12_RS00400 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP12_RS00410 SM00220 Serine/Threonine protein kinases, catalytic domain UP12_RS00415 SM00977 TilS substrate C-terminal domain UP12_RS00425 SM00382 ATPases associated with a variety of cellular activities UP12_RS00470 SM00905 Dihydroneopterin aldolase UP12_RS00480 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS00585 SM00382 ATPases associated with a variety of cellular activities UP12_RS00585 SM01086 C-terminal, D2-small domain, of ClpB protein UP12_RS00590 SM00382 ATPases associated with a variety of cellular activities UP12_RS00600 SM00670 Large family of predicted nucleotide-binding domains UP12_RS00625 SM00840 UP12_RS00625 UP12_RS00630 SM00535 Ribonuclease III family UP12_RS00635 SM00967 RNA 2'-O ribose methyltransferase substrate binding UP12_RS00655 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. UP12_RS00655 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. UP12_RS00660 SM00649 Ribosomal protein L11/L12 UP12_RS00690 SM00663 RNA polymerase I subunit A N-terminus UP12_RS00710 SM00838 Elongation factor G C-terminus UP12_RS00710 SM00889 Elongation factor G, domain IV UP12_RS00725 SM01403 UP12_RS00725 UP12_RS00745 SM01382 UP12_RS00745 UP12_RS00745 SM01383 UP12_RS00745 UP12_RS00760 SM00322 K homology RNA-binding domain UP12_RS00780 SM01374 UP12_RS00780 UP12_RS00785 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. UP12_RS00850 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_RS00870 SM00662 RNA polymerases D UP12_RS00880 SM00382 ATPases associated with a variety of cellular activities UP12_RS00885 SM00382 ATPases associated with a variety of cellular activities UP12_RS00940 SM00646 UP12_RS00940 UP12_RS00955 SM01251 UP12_RS00955 UP12_RS01130 SM00382 ATPases associated with a variety of cellular activities UP12_RS01145 SM00382 ATPases associated with a variety of cellular activities UP12_RS01175 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS01180 SM00382 ATPases associated with a variety of cellular activities UP12_RS01190 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS01260 SM00829 Enoylreductase UP12_RS01265 SM00825 Beta-ketoacyl synthase UP12_RS01270 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS01290 SM00450 Rhodanese Homology Domain UP12_RS01295 SM00450 Rhodanese Homology Domain UP12_RS01300 SM00450 Rhodanese Homology Domain UP12_RS01300 SM00849 Metallo-beta-lactamase superfamily UP12_RS01315 SM00946 Prolyl-tRNA synthetase, C-terminal UP12_RS01330 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS01360 SM00450 Rhodanese Homology Domain UP12_RS01375 SM01061 CAT RNA binding domain UP12_RS01415 SM00872 Alpha mannosidase, middle domain UP12_RS01520 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS01555 SM00387 Histidine kinase-like ATPases UP12_RS01560 SM00448 cheY-homologous receiver domain UP12_RS01580 SM00387 Histidine kinase-like ATPases UP12_RS01585 SM00448 cheY-homologous receiver domain UP12_RS01585 SM00850 LytTr DNA-binding domain UP12_RS01590 SM00382 ATPases associated with a variety of cellular activities UP12_RS01680 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_RS01680 SM00382 ATPases associated with a variety of cellular activities UP12_RS01725 SM00354 helix_turn _helix lactose operon repressor UP12_RS01845 SM00346 helix_turn_helix isocitrate lyase regulation UP12_RS01855 SM01130 UP12_RS01855 UP12_RS01860 SM00354 helix_turn _helix lactose operon repressor UP12_RS01925 SM00062 Bacterial periplasmic substrate-binding proteins UP12_RS01940 SM00344 helix_turn_helix ASNC type UP12_RS01955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS01955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS01985 SM00382 ATPases associated with a variety of cellular activities UP12_RS02000 SM00823 Phosphopantetheine attachment site UP12_RS02005 SM00823 Phosphopantetheine attachment site UP12_RS02010 SM00823 Phosphopantetheine attachment site UP12_RS02015 SM00822 UP12_RS02015 UP12_RS02020 SM00822 UP12_RS02020 UP12_RS02020 SM00824 Thioesterase UP12_RS02025 SM00824 Thioesterase UP12_RS02035 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS02065 SM00966 SpoVT / AbrB like domain UP12_RS02070 SM00382 ATPases associated with a variety of cellular activities UP12_RS02080 SM00062 Bacterial periplasmic substrate-binding proteins UP12_RS02095 SM00710 Parallel beta-helix repeats UP12_RS02110 SM00062 Bacterial periplasmic substrate-binding proteins UP12_RS02110 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP12_RS02120 SM00382 ATPases associated with a variety of cellular activities UP12_RS02135 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP12_RS02160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP12_RS02165 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS02215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS02215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS02215 SM01049 UP12_RS02215 UP12_RS02240 SM00894 Excalibur calcium-binding domain UP12_RS02265 SM00796 Allophanate hydrolase subunit 1 UP12_RS02270 SM00797 Allophanate hydrolase subunit 2 UP12_RS02275 SM00346 helix_turn_helix isocitrate lyase regulation UP12_RS02335 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS02335 SM00895 UP12_RS02335 UP12_RS02340 SM00342 helix_turn_helix, arabinose operon control protein UP12_RS02350 SM01329 UP12_RS02350 UP12_RS02355 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain UP12_RS02355 SM00437 Bacterial DNA topoisomerase I DNA-binding domain UP12_RS02355 SM00493 UP12_RS02355 UP12_RS02365 SM00267 diguanylate cyclase UP12_RS02440 SM00091 PAS domain UP12_RS02440 SM00387 Histidine kinase-like ATPases UP12_RS02445 SM00448 cheY-homologous receiver domain UP12_RS02465 SM00382 ATPases associated with a variety of cellular activities UP12_RS02505 SM00487 DEAD-like helicases superfamily UP12_RS02505 SM00490 helicase superfamily c-terminal domain UP12_RS02535 SM01005 Alanine racemase, C-terminal domain UP12_RS02565 SM00331 Sigma factor PP2C-like phosphatases UP12_RS02575 SM00387 Histidine kinase-like ATPases UP12_RS02585 SM00331 Sigma factor PP2C-like phosphatases UP12_RS02585 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP12_RS02590 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_RS02590 SM00732 Likely ribonuclease with RNase H fold. UP12_RS02595 SM00731 SprT homologues. UP12_RS02605 SM00861 Transketolase, pyrimidine binding domain UP12_RS02620 SM00382 ATPases associated with a variety of cellular activities UP12_RS02670 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS02810 SM00028 Tetratricopeptide repeats UP12_RS02820 SM00829 Enoylreductase UP12_RS02850 SM00357 Cold shock protein domain UP12_RS02855 SM01058 CarD-like/TRCF domain UP12_RS02860 SM00829 Enoylreductase UP12_RS02865 SM00422 helix_turn_helix, mercury resistance UP12_RS02910 SM00422 helix_turn_helix, mercury resistance UP12_RS02925 SM00870 UP12_RS02925 UP12_RS02935 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS02960 SM00387 Histidine kinase-like ATPases UP12_RS02965 SM00421 helix_turn_helix, Lux Regulon UP12_RS02965 SM00448 cheY-homologous receiver domain UP12_RS03010 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS03030 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS03150 SM00382 ATPases associated with a variety of cellular activities UP12_RS03160 SM00881 CoA binding domain UP12_RS03190 SM00883 Chaperonin 10 Kd subunit UP12_RS03200 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS03270 SM00460 Transglutaminase/protease-like homologues UP12_RS03295 SM00850 LytTr DNA-binding domain UP12_RS03340 SM01001 AIR carboxylase UP12_RS03350 SM00998 Adenylosuccinate lyase C-terminus UP12_RS03365 SM01211 UP12_RS03365 UP12_RS03390 SM00798 AICARFT/IMPCHase bienzyme UP12_RS03390 SM00851 MGS-like domain UP12_RS03395 SM01209 UP12_RS03395 UP12_RS03395 SM01210 UP12_RS03395 UP12_RS03420 SM00882 Coenzyme A transferase UP12_RS03425 SM00882 Coenzyme A transferase UP12_RS03480 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP12_RS03480 SM00292 breast cancer carboxy-terminal domain UP12_RS03480 SM00532 Ligase N family UP12_RS03535 SM00822 UP12_RS03535 UP12_RS03535 SM00823 Phosphopantetheine attachment site UP12_RS03535 SM00825 Beta-ketoacyl synthase UP12_RS03535 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP12_RS03535 SM01294 UP12_RS03535 UP12_RS03540 SM00823 Phosphopantetheine attachment site UP12_RS03545 SM00822 UP12_RS03545 UP12_RS03545 SM00823 Phosphopantetheine attachment site UP12_RS03545 SM00825 Beta-ketoacyl synthase UP12_RS03545 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP12_RS03550 SM00822 UP12_RS03550 UP12_RS03550 SM00823 Phosphopantetheine attachment site UP12_RS03550 SM00825 Beta-ketoacyl synthase UP12_RS03550 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP12_RS03555 SM00823 Phosphopantetheine attachment site UP12_RS03555 SM00825 Beta-ketoacyl synthase UP12_RS03555 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP12_RS03565 SM00098 Alkaline phosphatase homologues UP12_RS03590 SM00845 GatB domain UP12_RS03610 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP12_RS03640 SM00860 SMI1 / KNR4 family UP12_RS03790 SM00028 Tetratricopeptide repeats UP12_RS03795 SM00382 ATPases associated with a variety of cellular activities UP12_RS03800 SM00422 helix_turn_helix, mercury resistance UP12_RS03810 SM00382 ATPases associated with a variety of cellular activities UP12_RS03815 SM00487 DEAD-like helicases superfamily UP12_RS03815 SM00490 helicase superfamily c-terminal domain UP12_RS03820 SM00829 Enoylreductase UP12_RS03850 SM00320 WD40 repeats UP12_RS03865 SM00387 Histidine kinase-like ATPases UP12_RS03870 SM00448 cheY-homologous receiver domain UP12_RS03885 SM00631 UP12_RS03885 UP12_RS03950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS03950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS03965 SM00642 Alpha-amylase domain UP12_RS03970 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS03970 SM00866 UP12_RS03970 UP12_RS04000 SM00226 Low molecular weight phosphatase family UP12_RS04080 SM00478 endonuclease III UP12_RS04110 SM00422 helix_turn_helix, mercury resistance UP12_RS04110 SM00871 Bacterial transcription activator, effector binding domain UP12_RS04130 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain UP12_RS04205 SM00342 helix_turn_helix, arabinose operon control protein UP12_RS04215 SM00382 ATPases associated with a variety of cellular activities UP12_RS04240 SM00829 Enoylreductase UP12_RS04255 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS04275 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS04345 SM00835 Cupin UP12_RS04365 SM00478 endonuclease III UP12_RS04395 SM00382 ATPases associated with a variety of cellular activities UP12_RS04400 SM00382 ATPases associated with a variety of cellular activities UP12_RS04405 SM00382 ATPases associated with a variety of cellular activities UP12_RS04570 SM00855 Phosphoglycerate mutase family UP12_RS04615 SM00382 ATPases associated with a variety of cellular activities UP12_RS04650 SM00567 E-Z type HEAT repeats UP12_RS04670 SM00763 PrkA AAA domain UP12_RS04700 SM00357 Cold shock protein domain UP12_RS04705 SM00267 diguanylate cyclase UP12_RS04735 SM00138 Methyltransferase, chemotaxis proteins UP12_RS04735 SM00387 Histidine kinase-like ATPases UP12_RS04735 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS04740 SM00318 Staphylococcal nuclease homologues UP12_RS04815 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP12_RS04820 SM00421 helix_turn_helix, Lux Regulon UP12_RS04820 SM00448 cheY-homologous receiver domain UP12_RS04840 SM01060 UP12_RS04840 UP12_RS04860 SM00098 Alkaline phosphatase homologues UP12_RS04865 SM00257 Lysin motif UP12_RS04885 SM00563 Phosphate acyltransferases UP12_RS04890 SM01091 Transporter associated domain UP12_RS04895 SM00422 helix_turn_helix, mercury resistance UP12_RS04900 SM01091 Transporter associated domain UP12_RS04950 SM00382 ATPases associated with a variety of cellular activities UP12_RS04955 SM00382 ATPases associated with a variety of cellular activities UP12_RS04970 SM00382 ATPases associated with a variety of cellular activities UP12_RS05010 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_RS05055 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_RS05085 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS05115 SM00382 ATPases associated with a variety of cellular activities UP12_RS05185 SM00849 Metallo-beta-lactamase superfamily UP12_RS05215 SM00855 Phosphoglycerate mutase family UP12_RS05220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS05235 SM00914 UP12_RS05235 UP12_RS05245 SM01119 UP12_RS05245 UP12_RS05255 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS05425 SM00342 helix_turn_helix, arabinose operon control protein UP12_RS05465 SM01006 Siderophore biosynthesis protein domain UP12_RS05485 SM01018 B12 binding domain UP12_RS05500 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_RS05510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS05510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS05565 SM00859 Semialdehyde dehydrogenase, NAD binding domain UP12_RS05585 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain UP12_RS05590 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP12_RS05645 SM00825 Beta-ketoacyl synthase UP12_RS05655 SM00382 ATPases associated with a variety of cellular activities UP12_RS05660 SM00382 ATPases associated with a variety of cellular activities UP12_RS05705 SM00382 ATPases associated with a variety of cellular activities UP12_RS05710 SM00382 ATPases associated with a variety of cellular activities UP12_RS05740 SM00155 Phospholipase D. Active site motifs. UP12_RS05770 SM01118 UP12_RS05770 UP12_RS05780 SM00954 Region found in RelA / SpoT proteins UP12_RS05935 SM00829 Enoylreductase UP12_RS05940 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS05950 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS05970 SM01130 UP12_RS05970 UP12_RS05985 SM01059 Chloramphenicol acetyltransferase UP12_RS05990 SM00028 Tetratricopeptide repeats UP12_RS06000 SM00860 SMI1 / KNR4 family UP12_RS06065 SM00028 Tetratricopeptide repeats UP12_RS06075 SM00871 Bacterial transcription activator, effector binding domain UP12_RS06085 SM01005 Alanine racemase, C-terminal domain UP12_RS06090 SM00829 Enoylreductase UP12_RS06100 SM00612 UP12_RS06100 UP12_RS06130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS06150 SM00257 Lysin motif UP12_RS06150 SM00644 UP12_RS06150 UP12_RS06175 SM01022 UP12_RS06175 UP12_RS06205 SM00829 Enoylreductase UP12_RS06215 SM00861 Transketolase, pyrimidine binding domain UP12_RS06220 SM01059 Chloramphenicol acetyltransferase UP12_RS06260 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_RS06285 SM00382 ATPases associated with a variety of cellular activities UP12_RS06300 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain UP12_RS06310 SM00382 ATPases associated with a variety of cellular activities UP12_RS06345 SM00342 helix_turn_helix, arabinose operon control protein UP12_RS06370 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP12_RS06380 SM00028 Tetratricopeptide repeats UP12_RS06395 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS06420 SM00448 cheY-homologous receiver domain UP12_RS06420 SM00862 Transcriptional regulatory protein, C terminal UP12_RS06425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS06425 SM00387 Histidine kinase-like ATPases UP12_RS06425 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS06445 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_RS06445 SM00924 MgtE intracellular N domain UP12_RS06465 SM00422 helix_turn_helix, mercury resistance UP12_RS06475 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS06480 SM00052 Putative diguanylate phosphodiesterase UP12_RS06480 SM00267 diguanylate cyclase UP12_RS06540 SM00091 PAS domain UP12_RS06540 SM00387 Histidine kinase-like ATPases UP12_RS06540 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS06575 SM01007 Class II Aldolase and Adducin N-terminal domain UP12_RS06590 SM00387 Histidine kinase-like ATPases UP12_RS06590 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS06595 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS06610 SM00382 ATPases associated with a variety of cellular activities UP12_RS06610 SM01086 C-terminal, D2-small domain, of ClpB protein UP12_RS06685 SM00354 helix_turn _helix lactose operon repressor UP12_RS06690 SM01061 CAT RNA binding domain UP12_RS06720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS06720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS06745 SM00091 PAS domain UP12_RS06745 SM00387 Histidine kinase-like ATPases UP12_RS06745 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS06770 SM00260 Two component signalling adaptor domain UP12_RS06770 SM00448 cheY-homologous receiver domain UP12_RS06795 SM00257 Lysin motif UP12_RS06810 SM00052 Putative diguanylate phosphodiesterase UP12_RS06915 SM00852 Probable molybdopterin binding domain UP12_RS06950 SM00382 ATPases associated with a variety of cellular activities UP12_RS06960 SM00420 helix_turn_helix, Deoxyribose operon repressor UP12_RS06960 SM01134 UP12_RS06960 UP12_RS06985 SM00382 ATPases associated with a variety of cellular activities UP12_RS07000 SM00966 SpoVT / AbrB like domain UP12_RS07005 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP12_RS07005 SM00091 PAS domain UP12_RS07005 SM00387 Histidine kinase-like ATPases UP12_RS07005 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS07025 SM00849 Metallo-beta-lactamase superfamily UP12_RS07060 SM00861 Transketolase, pyrimidine binding domain UP12_RS07140 SM00838 Elongation factor G C-terminus UP12_RS07160 SM00670 Large family of predicted nucleotide-binding domains UP12_RS07185 SM00878 Biotin carboxylase C-terminal domain UP12_RS07235 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_RS07290 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_RS07310 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains UP12_RS07345 SM00740 UP12_RS07345 UP12_RS07350 SM00740 UP12_RS07350 UP12_RS07405 SM00842 Cell division protein FtsA UP12_RS07410 SM00864 Tubulin/FtsZ family, GTPase domain UP12_RS07410 SM00865 Tubulin/FtsZ family, C-terminal domain UP12_RS07440 SM00858 UP12_RS07440 UP12_RS07465 SM00382 ATPases associated with a variety of cellular activities UP12_RS07495 SM00363 S4 RNA-binding domain UP12_RS07520 SM00363 S4 RNA-binding domain UP12_RS07545 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain UP12_RS07550 SM00851 MGS-like domain UP12_RS07550 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP12_RS07550 SM01209 UP12_RS07550 UP12_RS07565 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family UP12_RS07615 SM00831 Cation transporter/ATPase, N-terminus UP12_RS07630 SM00072 Guanylate kinase homologues. UP12_RS07635 SM01409 UP12_RS07635 UP12_RS07645 SM00487 DEAD-like helicases superfamily UP12_RS07645 SM00490 helicase superfamily c-terminal domain UP12_RS07670 SM00331 Sigma factor PP2C-like phosphatases UP12_RS07670 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP12_RS07675 SM00220 Serine/Threonine protein kinases, catalytic domain UP12_RS07675 SM00740 UP12_RS07675 UP12_RS07690 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain UP12_RS07710 SM01120 UP12_RS07710 UP12_RS07710 SM01121 UP12_RS07710 UP12_RS07725 SM00487 DEAD-like helicases superfamily UP12_RS07725 SM00490 helicase superfamily c-terminal domain UP12_RS07740 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP12_RS07745 SM00822 UP12_RS07745 UP12_RS07755 SM00358 Double-stranded RNA binding motif UP12_RS07755 SM00535 Ribonuclease III family UP12_RS07760 SM00968 SMC proteins Flexible Hinge Domain UP12_RS07765 SM00382 ATPases associated with a variety of cellular activities UP12_RS07765 SM00962 SRP54-type protein, GTPase domain UP12_RS07765 SM00963 SRP54-type protein, helical bundle domain UP12_RS07775 SM00382 ATPases associated with a variety of cellular activities UP12_RS07775 SM00962 SRP54-type protein, GTPase domain UP12_RS07775 SM00963 SRP54-type protein, helical bundle domain UP12_RS07835 SM00881 CoA binding domain UP12_RS07845 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain UP12_RS07845 SM00437 Bacterial DNA topoisomerase I DNA-binding domain UP12_RS07845 SM00493 UP12_RS07845 UP12_RS07865 SM00382 ATPases associated with a variety of cellular activities UP12_RS07865 SM01086 C-terminal, D2-small domain, of ClpB protein UP12_RS07905 SM00382 ATPases associated with a variety of cellular activities UP12_RS07955 SM00448 cheY-homologous receiver domain UP12_RS07990 SM00962 SRP54-type protein, GTPase domain UP12_RS08000 SM00448 cheY-homologous receiver domain UP12_RS08005 SM00073 Histidine Phosphotransfer domain UP12_RS08005 SM00260 Two component signalling adaptor domain UP12_RS08005 SM00387 Histidine kinase-like ATPases UP12_RS08005 SM01231 UP12_RS08005 UP12_RS08010 SM00260 Two component signalling adaptor domain UP12_RS08070 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_RS08080 SM00479 UP12_RS08080 UP12_RS08080 SM00481 DNA polymerase alpha chain like domain UP12_RS08085 SM01067 Cellulose binding domain UP12_RS08095 SM00633 Glycosyl hydrolase family 10 UP12_RS08110 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_RS08110 SM00322 K homology RNA-binding domain UP12_RS08145 SM00904 Riboflavin kinase UP12_RS08150 SM01387 UP12_RS08150 UP12_RS08155 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_RS08155 SM00322 K homology RNA-binding domain UP12_RS08190 SM00859 Semialdehyde dehydrogenase, NAD binding domain UP12_RS08200 SM01130 UP12_RS08200 UP12_RS08205 SM00849 Metallo-beta-lactamase superfamily UP12_RS08220 SM00382 ATPases associated with a variety of cellular activities UP12_RS08220 SM00843 UP12_RS08220 UP12_RS08225 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS08225 SM00866 UP12_RS08225 UP12_RS08250 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS08275 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS08285 SM00852 Probable molybdopterin binding domain UP12_RS08290 SM00382 ATPases associated with a variety of cellular activities UP12_RS08295 SM00322 K homology RNA-binding domain UP12_RS08295 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_RS08320 SM00829 Enoylreductase UP12_RS08335 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_RS08350 SM00533 DNA-binding domain of DNA mismatch repair MUTS family UP12_RS08350 SM00534 ATPase domain of DNA mismatch repair MUTS family UP12_RS08355 SM00853 MutL C terminal dimerisation domain UP12_RS08355 SM01340 UP12_RS08355 UP12_RS08375 SM01058 CarD-like/TRCF domain UP12_RS08385 SM00028 Tetratricopeptide repeats UP12_RS08470 SM00646 UP12_RS08470 UP12_RS08475 SM00382 ATPases associated with a variety of cellular activities UP12_RS08490 SM00422 helix_turn_helix, mercury resistance UP12_RS08495 SM01230 UP12_RS08495 UP12_RS08530 SM00506 Appr-1"-p processing enzyme UP12_RS08540 SM00014 Acid phosphatase homologues UP12_RS08575 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen UP12_RS08645 SM00020 Trypsin-like serine protease UP12_RS08675 SM00257 Lysin motif UP12_RS08680 SM00857 Resolvase, N terminal domain UP12_RS08690 SM00861 Transketolase, pyrimidine binding domain UP12_RS08775 SM01207 UP12_RS08775 UP12_RS08780 SM00881 CoA binding domain UP12_RS08790 SM00387 Histidine kinase-like ATPases UP12_RS08790 SM00433 TopoisomeraseII UP12_RS08795 SM00434 DNA Topoisomerase IV UP12_RS08815 SM00226 Low molecular weight phosphatase family UP12_RS08825 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP12_RS08905 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS08950 SM00422 helix_turn_helix, mercury resistance UP12_RS08960 SM00387 Histidine kinase-like ATPases UP12_RS08960 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS08965 SM00448 cheY-homologous receiver domain UP12_RS08965 SM00862 Transcriptional regulatory protein, C terminal UP12_RS08975 SM00606 Cellulose Binding Domain Type IV UP12_RS09005 SM00354 helix_turn _helix lactose operon repressor UP12_RS09040 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS09075 SM00155 Phospholipase D. Active site motifs. UP12_RS09085 SM00100 Cyclic nucleotide-monophosphate binding domain UP12_RS09135 SM00878 Biotin carboxylase C-terminal domain UP12_RS09160 SM00420 helix_turn_helix, Deoxyribose operon repressor UP12_RS09160 SM01134 UP12_RS09160 UP12_RS09295 SM00382 ATPases associated with a variety of cellular activities UP12_RS09300 SM00382 ATPases associated with a variety of cellular activities UP12_RS09305 SM00422 helix_turn_helix, mercury resistance UP12_RS09325 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP12_RS09340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain UP12_RS09405 SM00849 Metallo-beta-lactamase superfamily UP12_RS09410 SM00871 Bacterial transcription activator, effector binding domain UP12_RS09425 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP12_RS09465 SM00257 Lysin motif UP12_RS09470 SM00341 Helicase and RNase D C-terminal UP12_RS09470 SM00487 DEAD-like helicases superfamily UP12_RS09470 SM00490 helicase superfamily c-terminal domain UP12_RS09470 SM00956 UP12_RS09470 UP12_RS09525 SM00861 Transketolase, pyrimidine binding domain UP12_RS09530 SM00327 von Willebrand factor (vWF) type A domain UP12_RS09535 SM00382 ATPases associated with a variety of cellular activities UP12_RS09545 SM00257 Lysin motif UP12_RS09610 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_RS09610 SM00245 tail specific protease UP12_RS09640 SM00014 Acid phosphatase homologues UP12_RS09665 SM00091 PAS domain UP12_RS09665 SM00382 ATPases associated with a variety of cellular activities UP12_RS09710 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS09760 SM00382 ATPases associated with a variety of cellular activities UP12_RS09810 SM00567 E-Z type HEAT repeats UP12_RS09810 SM00932 Scaffold protein Nfu/NifU N terminal UP12_RS09815 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_RS09845 SM00357 Cold shock protein domain UP12_RS09880 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs UP12_RS09880 SM00475 5'-3' exonuclease UP12_RS09925 SM00491 UP12_RS09925 UP12_RS09935 SM00981 UP12_RS09935 UP12_RS09960 SM00487 DEAD-like helicases superfamily UP12_RS09960 SM00490 helicase superfamily c-terminal domain UP12_RS10020 SM00478 endonuclease III UP12_RS10020 SM00525 UP12_RS10020 UP12_RS10040 SM00479 UP12_RS10040 UP12_RS10040 SM00491 UP12_RS10040 UP12_RS10080 SM00851 MGS-like domain UP12_RS10130 SM00914 UP12_RS10130 UP12_RS10135 SM00028 Tetratricopeptide repeats UP12_RS10200 SM00138 Methyltransferase, chemotaxis proteins UP12_RS10205 SM00562 UP12_RS10205 UP12_RS10235 SM00411 bacterial (prokaryotic) histone like domain UP12_RS10280 SM01240 UP12_RS10280 UP12_RS10285 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_RS10325 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_RS10345 SM00257 Lysin motif UP12_RS10355 SM00487 DEAD-like helicases superfamily UP12_RS10355 SM00490 helicase superfamily c-terminal domain UP12_RS10380 SM00257 Lysin motif UP12_RS10395 SM00091 PAS domain UP12_RS10395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS10395 SM00387 Histidine kinase-like ATPases UP12_RS10395 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS10400 SM00448 cheY-homologous receiver domain UP12_RS10400 SM00862 Transcriptional regulatory protein, C terminal UP12_RS10420 SM00363 S4 RNA-binding domain UP12_RS10555 SM00387 Histidine kinase-like ATPases UP12_RS10565 SM00936 Penicillin-binding protein 5, C-terminal domain UP12_RS10650 SM00028 Tetratricopeptide repeats UP12_RS10715 SM00849 Metallo-beta-lactamase superfamily UP12_RS10760 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS10760 SM00866 UP12_RS10760 UP12_RS10795 SM01350 UP12_RS10795 UP12_RS10820 SM00260 Two component signalling adaptor domain UP12_RS10850 SM00382 ATPases associated with a variety of cellular activities UP12_RS10860 SM00062 Bacterial periplasmic substrate-binding proteins UP12_RS10860 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP12_RS10870 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP12_RS10885 SM00861 Transketolase, pyrimidine binding domain UP12_RS10905 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_RS10915 SM00091 PAS domain UP12_RS10915 SM00382 ATPases associated with a variety of cellular activities UP12_RS10940 SM00448 cheY-homologous receiver domain UP12_RS10945 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_RS10960 SM00363 S4 RNA-binding domain UP12_RS10965 SM00861 Transketolase, pyrimidine binding domain UP12_RS11000 SM00878 Biotin carboxylase C-terminal domain UP12_RS11045 SM00382 ATPases associated with a variety of cellular activities UP12_RS11055 SM00841 Elongation factor P, C-terminal UP12_RS11055 SM01185 UP12_RS11055 UP12_RS11090 SM00529 Helix-turn-helix diphteria tox regulatory element UP12_RS11100 SM00450 Rhodanese Homology Domain UP12_RS11120 SM00487 DEAD-like helicases superfamily UP12_RS11120 SM00490 helicase superfamily c-terminal domain UP12_RS11130 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS11190 SM00382 ATPases associated with a variety of cellular activities UP12_RS11220 SM00849 Metallo-beta-lactamase superfamily UP12_RS11235 SM00631 UP12_RS11235 UP12_RS11255 SM00028 Tetratricopeptide repeats UP12_RS11285 SM00382 ATPases associated with a variety of cellular activities UP12_RS11290 SM00382 ATPases associated with a variety of cellular activities UP12_RS11375 SM00382 ATPases associated with a variety of cellular activities UP12_RS11390 SM00518 AP endonuclease family 2 UP12_RS11395 SM00487 DEAD-like helicases superfamily UP12_RS11395 SM00490 helicase superfamily c-terminal domain UP12_RS11430 SM00400 zinc finger UP12_RS11430 SM00493 UP12_RS11430 UP12_RS11445 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_RS11485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_RS11535 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_RS11550 SM00271 DnaJ molecular chaperone homology domain UP12_RS11570 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_RS11575 SM00838 Elongation factor G C-terminus UP12_RS11605 SM00849 Metallo-beta-lactamase superfamily UP12_RS11615 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP12_RS11635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_RS11645 SM01103 UP12_RS11645 UP12_RS11745 SM01007 Class II Aldolase and Adducin N-terminal domain UP12_RS11755 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS11770 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family UP12_RS11805 SM00382 ATPases associated with a variety of cellular activities UP12_RS11810 SM00062 Bacterial periplasmic substrate-binding proteins UP12_RS11830 SM00829 Enoylreductase UP12_RS11965 SM00732 Likely ribonuclease with RNase H fold. UP12_RS11975 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain UP12_RS11985 SM00382 ATPases associated with a variety of cellular activities UP12_RS11990 SM00062 Bacterial periplasmic substrate-binding proteins UP12_RS11990 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP12_RS12020 SM00028 Tetratricopeptide repeats UP12_RS12040 SM00382 ATPases associated with a variety of cellular activities UP12_RS12065 SM00287 Bacterial SH3 domain homologues UP12_RS12065 SM00646 UP12_RS12065 UP12_RS12075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_RS12075 SM00954 Region found in RelA / SpoT proteins UP12_RS12125 SM01323 UP12_RS12125 UP12_RS12145 SM00382 ATPases associated with a variety of cellular activities UP12_RS12150 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP12_RS12185 SM00257 Lysin motif UP12_RS12230 SM01317 UP12_RS12230 UP12_RS12325 SM00257 Lysin motif UP12_RS12335 SM01004 Delta-aminolevulinic acid dehydratase UP12_RS12370 SM00382 ATPases associated with a variety of cellular activities UP12_RS12370 SM00464 Found in ATP-dependent protease La (LON) UP12_RS12375 SM00382 ATPases associated with a variety of cellular activities UP12_RS12380 SM00382 ATPases associated with a variety of cellular activities UP12_RS12380 SM00994 ClpX C4-type zinc finger UP12_RS12380 SM01086 C-terminal, D2-small domain, of ClpB protein UP12_RS12405 SM01329 UP12_RS12405 UP12_RS12410 SM00917 LeuA allosteric (dimerisation) domain UP12_RS12520 SM00909 Sporulation and spore germination UP12_RS12530 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS12535 SM00857 Resolvase, N terminal domain UP12_RS12555 SM00646 UP12_RS12555 UP12_RS12575 SM00710 Parallel beta-helix repeats UP12_RS12580 SM00047 Lysozyme subfamily 2 UP12_RS12660 SM00507 HNH nucleases UP12_RS12765 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS12770 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS12780 SM00421 helix_turn_helix, Lux Regulon UP12_RS12835 SM00465 GIY-YIG type nucleases (URI domain) UP12_RS12845 SM00813 Alpha-L-arabinofuranosidase C-terminus UP12_RS12850 SM00893 Electron transfer flavoprotein domain UP12_RS12855 SM00893 Electron transfer flavoprotein domain UP12_RS12885 SM00463 Small MutS-related domain UP12_RS12885 SM00533 DNA-binding domain of DNA mismatch repair MUTS family UP12_RS12885 SM00534 ATPase domain of DNA mismatch repair MUTS family UP12_RS12890 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP12_RS12890 SM00481 DNA polymerase alpha chain like domain UP12_RS12890 SM00483 DNA polymerase X family UP12_RS12910 SM00873 B3/4 domain UP12_RS12910 SM00874 tRNA synthetase B5 domain UP12_RS12910 SM00896 Ferredoxin-fold anticodon binding domain UP12_RS12920 SM00967 RNA 2'-O ribose methyltransferase substrate binding UP12_RS12975 SM00448 cheY-homologous receiver domain UP12_RS12975 SM00850 LytTr DNA-binding domain UP12_RS12980 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP12_RS12990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP12_RS12990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS12995 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain UP12_RS13010 SM00382 ATPases associated with a variety of cellular activities UP12_RS13035 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP12_RS13050 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain UP12_RS13050 SM01232 UP12_RS13050 UP12_RS13055 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs UP12_RS13055 SM00474 3'-5' exonuclease UP12_RS13055 SM00475 5'-3' exonuclease UP12_RS13055 SM00482 DNA polymerase A domain UP12_RS13060 SM00387 Histidine kinase-like ATPases UP12_RS13060 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS13065 SM00448 cheY-homologous receiver domain UP12_RS13065 SM00862 Transcriptional regulatory protein, C terminal UP12_RS13075 SM01329 UP12_RS13075 UP12_RS13120 SM00919 Malic enzyme, NAD binding domain UP12_RS13120 SM01274 UP12_RS13120 UP12_RS13125 SM00481 DNA polymerase alpha chain like domain UP12_RS13155 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_RS13160 SM00849 Metallo-beta-lactamase superfamily UP12_RS13185 SM00852 Probable molybdopterin binding domain UP12_RS13230 SM00487 DEAD-like helicases superfamily UP12_RS13230 SM00490 helicase superfamily c-terminal domain UP12_RS13245 SM00421 helix_turn_helix, Lux Regulon UP12_RS13245 SM00448 cheY-homologous receiver domain UP12_RS13255 SM00448 cheY-homologous receiver domain UP12_RS13255 SM00862 Transcriptional regulatory protein, C terminal UP12_RS13260 SM00387 Histidine kinase-like ATPases UP12_RS13275 SM00382 ATPases associated with a variety of cellular activities UP12_RS13295 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS13315 SM00981 UP12_RS13315 UP12_RS13350 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP12_RS13355 SM00363 S4 RNA-binding domain UP12_RS13355 SM01390 UP12_RS13355 UP12_RS13380 SM00363 S4 RNA-binding domain UP12_RS13395 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_RS13405 SM00354 helix_turn _helix lactose operon repressor UP12_RS13410 SM00830 Chorismate mutase type II UP12_RS13435 SM00382 ATPases associated with a variety of cellular activities UP12_RS13435 SM00843 UP12_RS13435 UP12_RS13475 SM00919 Malic enzyme, NAD binding domain UP12_RS13475 SM01274 UP12_RS13475 UP12_RS13480 SM00849 Metallo-beta-lactamase superfamily UP12_RS13500 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP12_RS13535 SM00420 helix_turn_helix, Deoxyribose operon repressor UP12_RS13540 SM00363 S4 RNA-binding domain UP12_RS13575 SM00450 Rhodanese Homology Domain UP12_RS13605 SM00342 helix_turn_helix, arabinose operon control protein UP12_RS13655 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP12_RS13655 SM00091 PAS domain UP12_RS13670 SM00382 ATPases associated with a variety of cellular activities UP12_RS13680 SM00382 ATPases associated with a variety of cellular activities UP12_RS13685 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS13700 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_RS13760 SM00563 Phosphate acyltransferases UP12_RS13775 SM00382 ATPases associated with a variety of cellular activities UP12_RS13835 SM01234 UP12_RS13835 UP12_RS13840 SM00947 Carbonic anhydrase UP12_RS13880 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain UP12_RS14060 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS14075 SM00244 prohibitin homologues UP12_RS14105 SM00028 Tetratricopeptide repeats UP12_RS14125 SM00644 UP12_RS14125 UP12_RS14185 SM00257 Lysin motif UP12_RS14285 SM00470 ParB-like nuclease domain UP12_RS14450 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS14465 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS14495 SM00644 UP12_RS14495 UP12_RS14560 SM00257 Lysin motif UP12_RS14635 SM00421 helix_turn_helix, Lux Regulon UP12_RS14655 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS14660 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS14670 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_RS14670 SM00876 Biotin and Thiamin Synthesis associated domain UP12_RS14705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS14705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS14705 SM00319 Homologues of the ligand binding domain of Tar UP12_RS14710 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS14710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS14715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS14715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS14715 SM00319 Homologues of the ligand binding domain of Tar UP12_RS14720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS14720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS14720 SM00319 Homologues of the ligand binding domain of Tar UP12_RS14745 SM01091 Transporter associated domain UP12_RS14795 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_RS14805 SM00344 helix_turn_helix ASNC type UP12_RS14825 SM00387 Histidine kinase-like ATPases UP12_RS14825 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS14835 SM01298 UP12_RS14835 UP12_RS14840 SM00479 UP12_RS14840 UP12_RS14865 SM00387 Histidine kinase-like ATPases UP12_RS14870 SM00448 cheY-homologous receiver domain UP12_RS14880 SM00382 ATPases associated with a variety of cellular activities UP12_RS14945 SM00421 helix_turn_helix, Lux Regulon UP12_RS14945 SM00448 cheY-homologous receiver domain UP12_RS14950 SM00387 Histidine kinase-like ATPases UP12_RS14970 SM00052 Putative diguanylate phosphodiesterase UP12_RS15020 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_RS15065 SM01002 Alanine dehydrogenase/PNT, C-terminal domain UP12_RS15065 SM01003 Alanine dehydrogenase/PNT, N-terminal domain UP12_RS15215 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_RS15255 SM00835 Cupin UP12_RS15310 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS15315 SM00448 cheY-homologous receiver domain UP12_RS15315 SM00862 Transcriptional regulatory protein, C terminal UP12_RS15350 SM00487 DEAD-like helicases superfamily UP12_RS15380 SM00382 ATPases associated with a variety of cellular activities UP12_RS15400 SM00382 ATPases associated with a variety of cellular activities UP12_RS15400 SM00930 UP12_RS15400 UP12_RS15415 SM00493 UP12_RS15415 UP12_RS15465 SM00382 ATPases associated with a variety of cellular activities UP12_RS15480 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_RS15485 SM00448 cheY-homologous receiver domain UP12_RS15485 SM00862 Transcriptional regulatory protein, C terminal UP12_RS15490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS15490 SM00387 Histidine kinase-like ATPases UP12_RS15490 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS15525 SM00421 helix_turn_helix, Lux Regulon UP12_RS15525 SM00448 cheY-homologous receiver domain UP12_RS15530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS15530 SM00387 Histidine kinase-like ATPases UP12_RS15560 SM00382 ATPases associated with a variety of cellular activities UP12_RS15575 SM00710 Parallel beta-helix repeats UP12_RS15580 SM00858 UP12_RS15580 UP12_RS15590 SM00354 helix_turn _helix lactose operon repressor UP12_RS15600 SM00387 Histidine kinase-like ATPases UP12_RS15600 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS15605 SM00448 cheY-homologous receiver domain UP12_RS15605 SM00862 Transcriptional regulatory protein, C terminal UP12_RS15610 SM00382 ATPases associated with a variety of cellular activities UP12_RS15640 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS15700 SM00382 ATPases associated with a variety of cellular activities UP12_RS15725 SM00448 cheY-homologous receiver domain UP12_RS15730 SM00387 Histidine kinase-like ATPases UP12_RS15765 SM00267 diguanylate cyclase UP12_RS15790 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_RS15790 SM00357 Cold shock protein domain UP12_RS15790 SM00955 UP12_RS15790 UP12_RS15805 SM00966 SpoVT / AbrB like domain UP12_RS15810 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS15815 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS15820 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS15845 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_RS15845 SM00382 ATPases associated with a variety of cellular activities UP12_RS15885 SM00382 ATPases associated with a variety of cellular activities UP12_RS15895 SM01192 UP12_RS15895 UP12_RS15895 SM01193 UP12_RS15895 UP12_RS15915 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP12_RS15935 SM00382 ATPases associated with a variety of cellular activities UP12_RS15940 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS15940 SM00895 UP12_RS15940 UP12_RS15960 SM00382 ATPases associated with a variety of cellular activities UP12_RS15965 SM00382 ATPases associated with a variety of cellular activities UP12_RS16050 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS16080 SM00382 ATPases associated with a variety of cellular activities UP12_RS16085 SM00382 ATPases associated with a variety of cellular activities UP12_RS16090 SM00382 ATPases associated with a variety of cellular activities UP12_RS16155 SM00947 Carbonic anhydrase UP12_RS16225 SM00028 Tetratricopeptide repeats UP12_RS16325 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS16325 SM00866 UP12_RS16325 UP12_RS16360 SM00382 ATPases associated with a variety of cellular activities UP12_RS16365 SM00487 DEAD-like helicases superfamily UP12_RS16365 SM00490 helicase superfamily c-terminal domain UP12_RS16400 SM00448 cheY-homologous receiver domain UP12_RS16400 SM00862 Transcriptional regulatory protein, C terminal UP12_RS16405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS16405 SM00387 Histidine kinase-like ATPases UP12_RS16405 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS16425 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_RS16435 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_RS16435 SM00245 tail specific protease UP12_RS16455 SM00382 ATPases associated with a variety of cellular activities UP12_RS16480 SM00937 UP12_RS16480 UP12_RS16485 SM00957 SecA DEAD-like domain UP12_RS16485 SM00958 SecA preprotein cross-linking domain UP12_RS16495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS16495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS16575 SM00487 DEAD-like helicases superfamily UP12_RS16575 SM00490 helicase superfamily c-terminal domain UP12_RS16585 SM00421 helix_turn_helix, Lux Regulon UP12_RS16585 SM00448 cheY-homologous receiver domain UP12_RS16590 SM00387 Histidine kinase-like ATPases UP12_RS16635 SM00984 UDP binding domain UP12_RS16660 SM00646 UP12_RS16660 UP12_RS16690 SM00382 ATPases associated with a variety of cellular activities UP12_RS16730 SM00047 Lysozyme subfamily 2 UP12_RS16730 SM00287 Bacterial SH3 domain homologues UP12_RS16755 SM00342 helix_turn_helix, arabinose operon control protein UP12_RS16755 SM00448 cheY-homologous receiver domain UP12_RS16760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS16760 SM00387 Histidine kinase-like ATPases UP12_RS16785 SM00354 helix_turn _helix lactose operon repressor UP12_RS16840 SM00854 Bacterial capsule synthesis protein PGA_cap UP12_RS16870 SM00354 helix_turn _helix lactose operon repressor UP12_RS16885 SM00382 ATPases associated with a variety of cellular activities UP12_RS16900 SM00903 Flavin reductase like domain UP12_RS16920 SM00344 helix_turn_helix ASNC type UP12_RS16935 SM00984 UDP binding domain UP12_RS16945 SM00487 DEAD-like helicases superfamily UP12_RS16945 SM00490 helicase superfamily c-terminal domain UP12_RS16950 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP12_RS16950 SM00091 PAS domain UP12_RS17005 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS17015 SM00014 Acid phosphatase homologues UP12_RS17025 SM00062 Bacterial periplasmic substrate-binding proteins UP12_RS17035 SM00382 ATPases associated with a variety of cellular activities UP12_RS17045 SM00938 Nitrogen regulatory protein P-II UP12_RS17070 SM00382 ATPases associated with a variety of cellular activities UP12_RS17095 SM00833 Cobalamin synthesis protein cobW C-terminal domain UP12_RS17105 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_RS17125 SM00327 von Willebrand factor (vWF) type A domain UP12_RS17130 SM00327 von Willebrand factor (vWF) type A domain UP12_RS17165 SM00382 ATPases associated with a variety of cellular activities UP12_RS17225 SM00226 Low molecular weight phosphatase family UP12_RS17260 SM00937 UP12_RS17260 UP12_RS17275 SM00919 Malic enzyme, NAD binding domain UP12_RS17275 SM01274 UP12_RS17275 UP12_RS17290 SM00357 Cold shock protein domain UP12_RS17290 SM00382 ATPases associated with a variety of cellular activities UP12_RS17290 SM00959 Rho termination factor, N-terminal domain UP12_RS17315 SM00448 cheY-homologous receiver domain UP12_RS17340 SM00382 ATPases associated with a variety of cellular activities UP12_RS17390 SM00155 Phospholipase D. Active site motifs. UP12_RS17410 SM00382 ATPases associated with a variety of cellular activities UP12_RS17415 SM00155 Phospholipase D. Active site motifs. UP12_RS17425 SM00836 DALR anticodon binding domain UP12_RS17425 SM01016 Arginyl tRNA synthetase N terminal dom UP12_RS17480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_RS17505 SM00028 Tetratricopeptide repeats UP12_RS17515 SM00860 SMI1 / KNR4 family UP12_RS17580 SM00344 helix_turn_helix ASNC type UP12_RS17650 SM00858 UP12_RS17650 UP12_RS17685 SM00835 Cupin UP12_RS17710 SM00986 Uracil DNA glycosylase superfamily UP12_RS17710 SM00987 UreE urease accessory protein, C-terminal domain UP12_RS17735 SM00640 Glycosyl hydrolases family 32 UP12_RS17745 SM01061 CAT RNA binding domain UP12_RS17825 SM00342 helix_turn_helix, arabinose operon control protein UP12_RS17900 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP12_RS17910 SM00382 ATPases associated with a variety of cellular activities UP12_RS17920 SM00062 Bacterial periplasmic substrate-binding proteins UP12_RS17920 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP12_RS17930 SM00954 Region found in RelA / SpoT proteins UP12_RS17940 SM00382 ATPases associated with a variety of cellular activities UP12_RS17950 SM00710 Parallel beta-helix repeats UP12_RS18005 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_RS18025 SM00656 UP12_RS18025 UP12_RS18030 SM00382 ATPases associated with a variety of cellular activities UP12_RS18035 SM00382 ATPases associated with a variety of cellular activities UP12_RS18050 SM00382 ATPases associated with a variety of cellular activities UP12_RS18070 SM00382 ATPases associated with a variety of cellular activities UP12_RS18085 SM00725 NEAr Transporter domain UP12_RS18090 SM00725 NEAr Transporter domain UP12_RS18095 SM00725 NEAr Transporter domain UP12_RS18190 SM00870 UP12_RS18190 UP12_RS18195 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS18200 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS18275 SM01061 CAT RNA binding domain UP12_RS18285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS18295 SM00382 ATPases associated with a variety of cellular activities UP12_RS18345 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_RS18345 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP12_RS18350 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain UP12_RS18360 SM01133 UP12_RS18360 UP12_RS18410 SM00421 helix_turn_helix, Lux Regulon UP12_RS18420 SM00422 helix_turn_helix, mercury resistance UP12_RS18430 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP12_RS18430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_RS18495 SM00354 helix_turn _helix lactose operon repressor UP12_RS18540 SM00382 ATPases associated with a variety of cellular activities UP12_RS18585 SM00382 ATPases associated with a variety of cellular activities UP12_RS18595 SM00028 Tetratricopeptide repeats UP12_RS18600 SM01061 CAT RNA binding domain UP12_RS18640 SM00530 Helix-turn-helix XRE-family like proteins UP12_RS18655 SM00354 helix_turn _helix lactose operon repressor UP12_RS18700 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_RS18700 SM00866 UP12_RS18700 UP12_RS18735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS18735 SM00387 Histidine kinase-like ATPases UP12_RS18735 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS18740 SM00448 cheY-homologous receiver domain UP12_RS18740 SM00862 Transcriptional regulatory protein, C terminal UP12_RS18750 SM00849 Metallo-beta-lactamase superfamily UP12_RS18760 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP12_RS18820 SM00382 ATPases associated with a variety of cellular activities UP12_RS18840 SM00382 ATPases associated with a variety of cellular activities UP12_RS18850 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_RS18855 SM00849 Metallo-beta-lactamase superfamily UP12_RS18870 SM00091 PAS domain UP12_RS18870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_RS18870 SM00387 Histidine kinase-like ATPases UP12_RS18870 SM00388 His Kinase A (phosphoacceptor) domain UP12_RS18875 SM00448 cheY-homologous receiver domain UP12_RS18875 SM00862 Transcriptional regulatory protein, C terminal UP12_RS18915 SM00788 Adenylosuccinate synthetase UP12_RS18935 SM00382 ATPases associated with a variety of cellular activities UP12_RS18955 SM00822 UP12_RS18955 UP12_RS18975 SM00823 Phosphopantetheine attachment site UP12_RS18980 SM00923 MbtH-like protein UP12_RS18985 SM00342 helix_turn_helix, arabinose operon control protein UP12_RS19010 SM00267 diguanylate cyclase UP12_RS19020 SM01131 UP12_RS19020 UP12_RS19040 SM01060 UP12_RS19040 UP12_RS19065 SM00382 ATPases associated with a variety of cellular activities UP12_RS19115 SM00470 ParB-like nuclease domain UP12_RS19130 SM00470 ParB-like nuclease domain UP12_RS19140 SM01228 UP12_RS19140 UP12_RS19150 SM00393 Putative single-stranded nucleic acids-binding domain UP12_RS19150 SM01245 UP12_RS19150 UP12_RS19230 SM00434 DNA Topoisomerase IV