locus-tag class description UP12_RS00005 PF00308 Bacterial dnaA protein UP12_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix UP12_RS00005 PF11638 DnaA N-terminal domain UP12_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain UP12_RS00010 PF02767 DNA polymerase III beta subunit, central domain UP12_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain UP12_RS00020 PF02463 RecF/RecN/SMC N terminal domain UP12_RS00025 PF04025 Domain of unknown function (DUF370) UP12_RS00030 PF00204 DNA gyrase B UP12_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS00030 PF01751 Toprim domain UP12_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus UP12_RS00035 PF00521 DNA gyrase/topoisomerase IV, subunit A UP12_RS00035 PF03989 DNA gyrase C-terminal domain, beta-propeller UP12_RS00065 PF14175 YaaC-like Protein UP12_RS00070 PF00571 CBS domain UP12_RS00070 PF00478 IMP dehydrogenase / GMP reductase domain UP12_RS00075 PF00768 D-alanyl-D-alanine carboxypeptidase UP12_RS00075 PF07943 Penicillin-binding protein 5, C-terminal domain UP12_RS00080 PF00392 Bacterial regulatory proteins, gntR family UP12_RS00080 PF00155 Aminotransferase class I and II UP12_RS00085 PF01680 SOR/SNZ family UP12_RS00090 PF01174 SNO glutamine amidotransferase family UP12_RS00095 PF02403 Seryl-tRNA synthetase N-terminal domain UP12_RS00095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UP12_RS00100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS00110 PF01712 Deoxynucleoside kinase UP12_RS00115 PF01712 Deoxynucleoside kinase UP12_RS00120 PF01476 LysM domain UP12_RS00120 PF00704 Glycosyl hydrolases family 18 UP12_RS00125 PF00857 Isochorismatase family UP12_RS00130 PF14437 MafB19-like deaminase UP12_RS00140 PF12169 DNA polymerase III subunits gamma and tau domain III UP12_RS00145 PF02575 YbaB/EbfC DNA-binding family UP12_RS00150 PF02132 RecR protein UP12_RS00150 PF13662 Toprim domain UP12_RS00155 PF10704 Protein of unknown function (DUF2508) UP12_RS00160 PF07441 SigmaK-factor processing regulatory protein BofA UP12_RS00190 PF10764 Inhibitor of sigma-G Gin UP12_RS00195 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein UP12_RS00200 PF05816 Toxic anion resistance protein (TelA) UP12_RS00205 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain UP12_RS00205 PF01276 Orn/Lys/Arg decarboxylase, major domain UP12_RS00210 PF02223 Thymidylate kinase UP12_RS00215 PF06153 Cyclic-di-AMP receptor UP12_RS00220 PF03885 Protein of unknown function (DUF327) UP12_RS00225 PF09115 DNA polymerase III, delta subunit, C terminal UP12_RS00230 PF04468 PSP1 C-terminal conserved region UP12_RS00235 PF06156 Initiation control protein YabA UP12_RS00240 PF05175 Methyltransferase small domain UP12_RS00245 PF01541 GIY-YIG catalytic domain UP12_RS00250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UP12_RS00255 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin UP12_RS00255 PF18277 AbrB C-terminal domain UP12_RS00260 PF01588 Putative tRNA binding domain UP12_RS00260 PF08264 Anticodon-binding domain of tRNA UP12_RS00260 PF09334 tRNA synthetases class I (M) UP12_RS00265 PF01026 TatD related DNase UP12_RS00270 PF06725 3D domain UP12_RS00270 PF07501 G5 domain UP12_RS00270 PF03990 G5-linked-Ubiquitin-like domain UP12_RS00275 PF13331 Domain of unknown function (DUF4093) UP12_RS00275 PF13662 Toprim domain UP12_RS00280 PF00398 Ribosomal RNA adenine dimethylase UP12_RS00285 PF05582 YabG peptidase U57 UP12_RS00290 PF06257 Biofilm formation stimulator VEG UP12_RS00295 PF00269 Small, acid-soluble spore proteins, alpha/beta type UP12_RS00300 PF08544 GHMP kinases C terminal UP12_RS00300 PF00288 GHMP kinases N terminal domain UP12_RS00305 PF00156 Phosphoribosyl transferase domain UP12_RS00305 PF09182 Bacterial purine repressor, N-terminal UP12_RS00310 PF01042 Endoribonuclease L-PSP UP12_RS00315 PF04026 SpoVG UP12_RS00320 PF00132 Bacterial transferase hexapeptide (six repeats) UP12_RS00320 PF00483 Nucleotidyl transferase UP12_RS00325 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase UP12_RS00325 PF14572 Phosphoribosyl synthetase-associated domain UP12_RS00330 PF14693 Ribosomal protein TL5, C-terminal domain UP12_RS00330 PF01386 Ribosomal L25p family UP12_RS00335 PF01195 Peptidyl-tRNA hydrolase UP12_RS00340 PF10955 Protein of unknown function (DUF2757) UP12_RS00345 PF02559 CarD-like/TRCF domain UP12_RS00345 PF00270 DEAD/DEAH box helicase UP12_RS00345 PF00271 Helicase conserved C-terminal domain UP12_RS00345 PF03461 TRCF domain UP12_RS00345 PF17757 UvrB interaction domain UP12_RS00350 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin UP12_RS00350 PF15714 Stage V sporulation protein T C-terminal, transcription factor UP12_RS00355 PF01943 Polysaccharide biosynthesis protein UP12_RS00355 PF14667 Polysaccharide biosynthesis C-terminal domain UP12_RS00360 PF03819 MazG nucleotide pyrophosphohydrolase domain UP12_RS00360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UP12_RS00365 PF01479 S4 domain UP12_RS00370 PF07873 YabP family UP12_RS00375 PF09578 Spore cortex protein YabQ (Spore_YabQ) UP12_RS00380 PF04977 Septum formation initiator UP12_RS00385 PF00575 S1 RNA binding domain UP12_RS00400 PF07228 Stage II sporulation protein E (SpoIIE) UP12_RS00405 PF00092 von Willebrand factor type A domain UP12_RS00410 PF00069 Protein kinase domain UP12_RS00415 PF11734 TilS substrate C-terminal domain UP12_RS00415 PF09179 TilS substrate binding domain UP12_RS00415 PF01171 PP-loop family UP12_RS00420 PF00156 Phosphoribosyl transferase domain UP12_RS00425 PF00004 ATPase family associated with various cellular activities (AAA) UP12_RS00425 PF06480 FtsH Extracellular UP12_RS00425 PF17862 AAA+ lid domain UP12_RS00425 PF01434 Peptidase family M41 UP12_RS00430 PF03309 Type III pantothenate kinase UP12_RS00435 PF01430 Hsp33 protein UP12_RS00440 PF13145 PPIC-type PPIASE domain UP12_RS00445 PF00291 Pyridoxal-phosphate dependent enzyme UP12_RS00450 PF04715 Anthranilate synthase component I, N terminal region UP12_RS00450 PF00425 chorismate binding enzyme UP12_RS00455 PF00117 Glutamine amidotransferase class-I UP12_RS00460 PF01063 Amino-transferase class IV UP12_RS00465 PF00809 Pterin binding enzyme UP12_RS00470 PF02152 Dihydroneopterin aldolase UP12_RS00475 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) UP12_RS00480 PF01381 Helix-turn-helix UP12_RS00485 PF01207 Dihydrouridine synthase (Dus) UP12_RS00490 PF00152 tRNA synthetases class II (D, K and N) UP12_RS00490 PF01336 OB-fold nucleic acid binding domain UP12_RS00570 PF05848 CtsR N-terminal HTH domain UP12_RS00570 PF17727 CtsR C-terminal dimerization domain UP12_RS00575 PF02151 UvrB/uvrC motif UP12_RS00580 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain UP12_RS00585 PF10431 C-terminal, D2-small domain, of ClpB protein UP12_RS00585 PF02861 Clp amino terminal domain, pathogenicity island component UP12_RS00585 PF07724 AAA domain (Cdc48 subfamily) UP12_RS00585 PF00004 ATPase family associated with various cellular activities (AAA) UP12_RS00585 PF17871 AAA lid domain UP12_RS00590 PF18073 Rubredoxin metal binding domain UP12_RS00595 PF10635 DisA bacterial checkpoint controller linker region UP12_RS00595 PF02457 DisA bacterial checkpoint controller nucleotide-binding UP12_RS00605 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase UP12_RS00610 PF02542 YgbB family UP12_RS00615 PF00749 tRNA synthetases class I (E and Q), catalytic domain UP12_RS00620 PF00132 Bacterial transferase hexapeptide (six repeats) UP12_RS00620 PF06426 Serine acetyltransferase, N-terminal UP12_RS00625 PF09190 DALR domain UP12_RS00625 PF01406 tRNA synthetases class I (C) catalytic domain UP12_RS00630 PF00636 Ribonuclease III domain UP12_RS00635 PF08032 RNA 2'-O ribose methyltransferase substrate binding UP12_RS00635 PF00588 SpoU rRNA Methylase family UP12_RS00640 PF05991 YacP-like NYN domain UP12_RS00645 PF08281 Sigma-70, region 4 UP12_RS00645 PF04542 Sigma-70 region 2 UP12_RS00650 PF00584 SecE/Sec61-gamma subunits of protein translocation complex UP12_RS00655 PF02357 Transcription termination factor nusG UP12_RS00655 PF00467 KOW motif UP12_RS00660 PF03946 Ribosomal protein L11, N-terminal domain UP12_RS00660 PF00298 Ribosomal protein L11, RNA binding domain UP12_RS00665 PF00687 Ribosomal protein L1p/L10e family UP12_RS00670 PF00466 Ribosomal protein L10 UP12_RS00675 PF16320 Ribosomal protein L7/L12 dimerisation domain UP12_RS00675 PF00542 Ribosomal protein L7/L12 C-terminal domain UP12_RS00680 PF05175 Methyltransferase small domain UP12_RS00685 PF04561 RNA polymerase Rpb2, domain 2 UP12_RS00685 PF04563 RNA polymerase beta subunit UP12_RS00685 PF04560 RNA polymerase Rpb2, domain 7 UP12_RS00685 PF04565 RNA polymerase Rpb2, domain 3 UP12_RS00685 PF10385 RNA polymerase beta subunit external 1 domain UP12_RS00685 PF00562 RNA polymerase Rpb2, domain 6 UP12_RS00690 PF00623 RNA polymerase Rpb1, domain 2 UP12_RS00690 PF04997 RNA polymerase Rpb1, domain 1 UP12_RS00690 PF05000 RNA polymerase Rpb1, domain 4 UP12_RS00690 PF04983 RNA polymerase Rpb1, domain 3 UP12_RS00690 PF04998 RNA polymerase Rpb1, domain 5 UP12_RS00695 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family UP12_RS00700 PF00164 Ribosomal protein S12/S23 UP12_RS00705 PF00177 Ribosomal protein S7p/S5e UP12_RS00710 PF00679 Elongation factor G C-terminus UP12_RS00710 PF03764 Elongation factor G, domain IV UP12_RS00710 PF00009 Elongation factor Tu GTP binding domain UP12_RS00710 PF14492 Elongation Factor G, domain II UP12_RS00710 PF03144 Elongation factor Tu domain 2 UP12_RS00715 PF03143 Elongation factor Tu C-terminal domain UP12_RS00715 PF00009 Elongation factor Tu GTP binding domain UP12_RS00715 PF03144 Elongation factor Tu domain 2 UP12_RS00720 PF12146 Serine aminopeptidase, S33 UP12_RS00725 PF00338 Ribosomal protein S10p/S20e UP12_RS00730 PF00297 Ribosomal protein L3 UP12_RS00735 PF00573 Ribosomal protein L4/L1 family UP12_RS00740 PF00276 Ribosomal protein L23 UP12_RS00745 PF03947 Ribosomal Proteins L2, C-terminal domain UP12_RS00745 PF00181 Ribosomal Proteins L2, RNA binding domain UP12_RS00750 PF00203 Ribosomal protein S19 UP12_RS00755 PF00237 Ribosomal protein L22p/L17e UP12_RS00760 PF07650 KH domain UP12_RS00760 PF00189 Ribosomal protein S3, C-terminal domain UP12_RS00765 PF00252 Ribosomal protein L16p/L10e UP12_RS00770 PF00831 Ribosomal L29 protein UP12_RS00775 PF00366 Ribosomal protein S17 UP12_RS00780 PF00238 Ribosomal protein L14p/L23e UP12_RS00785 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 UP12_RS00785 PF00467 KOW motif UP12_RS00790 PF00673 ribosomal L5P family C-terminus UP12_RS00790 PF00281 Ribosomal protein L5 UP12_RS00795 PF00253 Ribosomal protein S14p/S29e UP12_RS00800 PF00410 Ribosomal protein S8 UP12_RS00805 PF00347 Ribosomal protein L6 UP12_RS00810 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast UP12_RS00815 PF00333 Ribosomal protein S5, N-terminal domain UP12_RS00815 PF03719 Ribosomal protein S5, C-terminal domain UP12_RS00820 PF00327 Ribosomal protein L30p/L7e UP12_RS00825 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A UP12_RS00830 PF00344 SecY translocase UP12_RS00835 PF05191 Adenylate kinase, active site lid UP12_RS00840 PF00557 Metallopeptidase family M24 UP12_RS00850 PF01176 Translation initiation factor 1A / IF-1 UP12_RS00855 PF00444 Ribosomal protein L36 UP12_RS00860 PF00416 Ribosomal protein S13/S18 UP12_RS00865 PF00411 Ribosomal protein S11 UP12_RS00870 PF01000 RNA polymerase Rpb3/RpoA insert domain UP12_RS00870 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain UP12_RS00870 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain UP12_RS00875 PF01196 Ribosomal protein L17 UP12_RS00880 PF00005 ABC transporter UP12_RS00885 PF00005 ABC transporter UP12_RS00890 PF02361 Cobalt transport protein UP12_RS00895 PF01416 tRNA pseudouridine synthase UP12_RS00900 PF00572 Ribosomal protein L13 UP12_RS00905 PF00380 Ribosomal protein S9/S16 UP12_RS00910 PF13302 Acetyltransferase (GNAT) domain UP12_RS00935 PF10730 Protein of unknown function (DUF2521) UP12_RS00940 PF01520 N-acetylmuramoyl-L-alanine amidase UP12_RS00945 PF10609 NUBPL iron-transfer P-loop NTPase UP12_RS00950 PF17898 Spore germination GerD central core domain UP12_RS00955 PF14089 KinB-signalling pathway activation in sporulation UP12_RS00960 PF01522 Polysaccharide deacetylase UP12_RS00990 PF00916 Sulfate permease family UP12_RS00990 PF01740 STAS domain UP12_RS00995 PF01758 Sodium Bile acid symporter family UP12_RS01000 PF07075 Protein of unknown function (DUF1343) UP12_RS01005 PF01915 Glycosyl hydrolase family 3 C-terminal domain UP12_RS01005 PF00933 Glycosyl hydrolase family 3 N terminal domain UP12_RS01010 PF00144 Beta-lactamase UP12_RS01015 PF02378 Phosphotransferase system, EIIC UP12_RS01015 PF00367 phosphotransferase system, EIIB UP12_RS01020 PF01418 Helix-turn-helix domain, rpiR family UP12_RS01020 PF01380 SIS domain UP12_RS01025 PF13580 SIS domain UP12_RS01055 PF00491 Arginase family UP12_RS01060 PF08281 Sigma-70, region 4 UP12_RS01060 PF04542 Sigma-70 region 2 UP12_RS01065 PF13490 Putative zinc-finger UP12_RS01070 PF02457 DisA bacterial checkpoint controller nucleotide-binding UP12_RS01075 PF07949 YbbR-like protein UP12_RS01080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I UP12_RS01080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain UP12_RS01080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UP12_RS01080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II UP12_RS01085 PF01380 SIS domain UP12_RS01130 PF13732 Domain of unknown function (DUF4162) UP12_RS01130 PF00005 ABC transporter UP12_RS01145 PF00005 ABC transporter UP12_RS01160 PF13905 Thioredoxin-like UP12_RS01170 PF04235 Protein of unknown function (DUF418) UP12_RS01180 PF00005 ABC transporter UP12_RS01190 PF01381 Helix-turn-helix UP12_RS01200 PF00561 alpha/beta hydrolase fold UP12_RS01205 PF00440 Bacterial regulatory proteins, tetR family UP12_RS01205 PF17922 Tetracyclin repressor-like, C-terminal domain UP12_RS01220 PF00324 Amino acid permease UP12_RS01225 PF03009 Glycerophosphoryl diester phosphodiesterase family UP12_RS01230 PF07690 Major Facilitator Superfamily UP12_RS01235 PF13145 PPIC-type PPIASE domain UP12_RS01240 PF03190 Protein of unknown function, DUF255 UP12_RS01250 PF00440 Bacterial regulatory proteins, tetR family UP12_RS01255 PF00106 short chain dehydrogenase UP12_RS01260 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS01260 PF00107 Zinc-binding dehydrogenase UP12_RS01265 PF00109 Beta-ketoacyl synthase, N-terminal domain UP12_RS01265 PF02801 Beta-ketoacyl synthase, C-terminal domain UP12_RS01280 PF02583 Metal-sensitive transcriptional repressor UP12_RS01285 PF13686 DsrE/DsrF/DrsH-like family UP12_RS01295 PF00581 Rhodanese-like domain UP12_RS01295 PF01206 Sulfurtransferase TusA UP12_RS01300 PF00581 Rhodanese-like domain UP12_RS01300 PF00753 Metallo-beta-lactamase superfamily UP12_RS01305 PF01206 Sulfurtransferase TusA UP12_RS01310 PF01925 Sulfite exporter TauE/SafE UP12_RS01315 PF03129 Anticodon binding domain UP12_RS01315 PF09180 Prolyl-tRNA synthetase, C-terminal UP12_RS01315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UP12_RS01320 PF07690 Major Facilitator Superfamily UP12_RS01330 PF01047 MarR family UP12_RS01340 PF04463 Protein of unknown function (DUF523) UP12_RS01350 PF00248 Aldo/keto reductase family UP12_RS01355 PF00465 Iron-containing alcohol dehydrogenase UP12_RS01360 PF17773 UPF0176 acylphosphatase like domain UP12_RS01360 PF00581 Rhodanese-like domain UP12_RS01360 PF12368 Rhodanase C-terminal UP12_RS01365 PF13520 Amino acid permease UP12_RS01375 PF00874 PRD domain UP12_RS01375 PF03123 CAT RNA binding domain UP12_RS01380 PF00367 phosphotransferase system, EIIB UP12_RS01380 PF02378 Phosphotransferase system, EIIC UP12_RS01380 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UP12_RS01385 PF00232 Glycosyl hydrolase family 1 UP12_RS01405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_RS01405 PF00874 PRD domain UP12_RS01405 PF05043 Mga helix-turn-helix domain UP12_RS01405 PF08279 HTH domain UP12_RS01410 PF00480 ROK family UP12_RS01415 PF07748 Glycosyl hydrolases family 38 C-terminal domain UP12_RS01415 PF09261 Alpha mannosidase middle domain UP12_RS01415 PF01074 Glycosyl hydrolases family 38 N-terminal domain UP12_RS01425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_RS01435 PF00082 Subtilase family UP12_RS01435 PF17936 Bacterial Ig domain UP12_RS01450 PF00324 Amino acid permease UP12_RS01455 PF02574 Homocysteine S-methyltransferase UP12_RS01460 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 UP12_RS01460 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_RS01465 PF03551 Transcriptional regulator PadR-like family UP12_RS01475 PF07690 Major Facilitator Superfamily UP12_RS01480 PF00583 Acetyltransferase (GNAT) family UP12_RS01495 PF00082 Subtilase family UP12_RS01500 PF01425 Amidase UP12_RS01505 PF00440 Bacterial regulatory proteins, tetR family UP12_RS01510 PF07883 Cupin domain UP12_RS01515 PF13823 Alcohol dehydrogenase GroES-associated UP12_RS01515 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS01515 PF00107 Zinc-binding dehydrogenase UP12_RS01520 PF01047 MarR family UP12_RS01525 PF13193 AMP-binding enzyme C-terminal domain UP12_RS01525 PF00501 AMP-binding enzyme UP12_RS01530 PF13520 Amino acid permease UP12_RS01540 PF00561 alpha/beta hydrolase fold UP12_RS01545 PF01235 Sodium:alanine symporter family UP12_RS01550 PF04960 Glutaminase UP12_RS01555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS01560 PF00072 Response regulator receiver domain UP12_RS01560 PF08664 YcbB domain UP12_RS01565 PF02810 SEC-C motif UP12_RS01565 PF05225 helix-turn-helix, Psq domain UP12_RS01575 PF00248 Aldo/keto reductase family UP12_RS01580 PF14501 GHKL domain UP12_RS01585 PF04397 LytTr DNA-binding domain UP12_RS01585 PF00072 Response regulator receiver domain UP12_RS01590 PF00005 ABC transporter UP12_RS01595 PF12679 ABC-2 family transporter protein UP12_RS01605 PF11611 Domain of unknown function (DUF4352) UP12_RS01605 PF17118 Domain of unknown function (DUF5105) UP12_RS01610 PF07486 Cell Wall Hydrolase UP12_RS01625 PF00296 Luciferase-like monooxygenase UP12_RS01630 PF02342 TerD domain UP12_RS01635 PF02342 TerD domain UP12_RS01640 PF02342 TerD domain UP12_RS01645 PF03741 Integral membrane protein TerC family UP12_RS01670 PF14266 Putative component of 'biosynthetic module' UP12_RS01675 PF05816 Toxic anion resistance protein (TelA) UP12_RS01680 PF00005 ABC transporter UP12_RS01680 PF00571 CBS domain UP12_RS01685 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS01690 PF04069 Substrate binding domain of ABC-type glycine betaine transport system UP12_RS01705 PF07687 Peptidase dimerisation domain UP12_RS01705 PF01546 Peptidase family M20/M25/M40 UP12_RS01710 PF03606 C4-dicarboxylate anaerobic carrier UP12_RS01715 PF00056 lactate/malate dehydrogenase, NAD binding domain UP12_RS01715 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain UP12_RS01720 PF02652 L-lactate permease UP12_RS01725 PF00356 Bacterial regulatory proteins, lacI family UP12_RS01730 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UP12_RS01735 PF05116 Sucrose-6F-phosphate phosphohydrolase UP12_RS01740 PF02894 Oxidoreductase family, C-terminal alpha/beta domain UP12_RS01740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UP12_RS01745 PF07690 Major Facilitator Superfamily UP12_RS01750 PF01810 LysE type translocator UP12_RS01760 PF08892 YqcI/YcgG family UP12_RS01765 PF00324 Amino acid permease UP12_RS01770 PF09347 Domain of unknown function (DUF1989) UP12_RS01775 PF02540 NAD synthase UP12_RS01795 PF13181 Tetratricopeptide repeat UP12_RS01795 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS01800 PF14040 Deoxyribonuclease NucA/NucB UP12_RS01810 PF00171 Aldehyde dehydrogenase family UP12_RS01815 PF01487 Type I 3-dehydroquinase UP12_RS01820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UP12_RS01820 PF00205 Thiamine pyrophosphate enzyme, central domain UP12_RS01820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UP12_RS01830 PF02515 CoA-transferase family III UP12_RS01835 PF07690 Major Facilitator Superfamily UP12_RS01845 PF01614 Bacterial transcriptional regulator UP12_RS01845 PF09339 IclR helix-turn-helix domain UP12_RS01850 PF01202 Shikimate kinase UP12_RS01855 PF00701 Dihydrodipicolinate synthetase family UP12_RS01860 PF00356 Bacterial regulatory proteins, lacI family UP12_RS01865 PF07690 Major Facilitator Superfamily UP12_RS01870 PF08241 Methyltransferase domain UP12_RS01875 PF03466 LysR substrate binding domain UP12_RS01875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS01880 PF00795 Carbon-nitrogen hydrolase UP12_RS01885 PF05448 Acetyl xylan esterase (AXE1) UP12_RS01895 PF10127 RNA repair pathway DNA polymerase beta family UP12_RS01900 PF01619 Proline dehydrogenase UP12_RS01905 PF00171 Aldehyde dehydrogenase family UP12_RS01910 PF13556 PucR C-terminal helix-turn-helix domain UP12_RS01910 PF17853 GGDEF-like domain UP12_RS01915 PF02040 Arsenical pump membrane protein UP12_RS01920 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS01925 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_RS01930 PF10925 Protein of unknown function (DUF2680) UP12_RS01935 PF12706 Beta-lactamase superfamily domain UP12_RS01940 PF01037 Lrp/AsnC ligand binding domain UP12_RS01945 PF02522 Aminoglycoside 3-N-acetyltransferase UP12_RS01950 PF11033 Competence protein J (ComJ) UP12_RS01955 PF17202 Single cache domain 3 UP12_RS01955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS01955 PF00672 HAMP domain UP12_RS01960 PF14040 Deoxyribonuclease NucA/NucB UP12_RS01970 PF05378 Hydantoinase/oxoprolinase N-terminal region UP12_RS01970 PF01968 Hydantoinase/oxoprolinase UP12_RS01985 PF00005 ABC transporter UP12_RS01985 PF08402 TOBE domain UP12_RS01990 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS01995 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS02000 PF13193 AMP-binding enzyme C-terminal domain UP12_RS02000 PF00668 Condensation domain UP12_RS02000 PF00550 Phosphopantetheine attachment site UP12_RS02000 PF00501 AMP-binding enzyme UP12_RS02005 PF13193 AMP-binding enzyme C-terminal domain UP12_RS02005 PF00550 Phosphopantetheine attachment site UP12_RS02005 PF00668 Condensation domain UP12_RS02005 PF00501 AMP-binding enzyme UP12_RS02010 PF00501 AMP-binding enzyme UP12_RS02010 PF13193 AMP-binding enzyme C-terminal domain UP12_RS02010 PF00668 Condensation domain UP12_RS02010 PF00550 Phosphopantetheine attachment site UP12_RS02010 PF00975 Thioesterase domain UP12_RS02015 PF00501 AMP-binding enzyme UP12_RS02015 PF13193 AMP-binding enzyme C-terminal domain UP12_RS02015 PF00668 Condensation domain UP12_RS02015 PF00550 Phosphopantetheine attachment site UP12_RS02020 PF00501 AMP-binding enzyme UP12_RS02020 PF13193 AMP-binding enzyme C-terminal domain UP12_RS02020 PF00668 Condensation domain UP12_RS02020 PF00550 Phosphopantetheine attachment site UP12_RS02025 PF00975 Thioesterase domain UP12_RS02030 PF00892 EamA-like transporter family UP12_RS02035 PF00155 Aminotransferase class I and II UP12_RS02035 PF00392 Bacterial regulatory proteins, gntR family UP12_RS02040 PF01648 4'-phosphopantetheinyl transferase superfamily UP12_RS02060 PF04203 Sortase domain UP12_RS02065 PF18277 AbrB C-terminal domain UP12_RS02065 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin UP12_RS02070 PF00005 ABC transporter UP12_RS02075 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS02080 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_RS02085 PF00324 Amino acid permease UP12_RS02090 PF00854 POT family UP12_RS02095 PF13229 Right handed beta helix region UP12_RS02095 PF12708 Pectate lyase superfamily protein UP12_RS02100 PF00296 Luciferase-like monooxygenase UP12_RS02105 PF00583 Acetyltransferase (GNAT) family UP12_RS02110 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_RS02115 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS02120 PF00005 ABC transporter UP12_RS02125 PF01546 Peptidase family M20/M25/M40 UP12_RS02125 PF07687 Peptidase dimerisation domain UP12_RS02130 PF03972 MmgE/PrpD family UP12_RS02135 PF01740 STAS domain UP12_RS02135 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain UP12_RS02140 PF13840 ACT domain UP12_RS02140 PF00696 Amino acid kinase family UP12_RS02145 PF07690 Major Facilitator Superfamily UP12_RS02150 PF00440 Bacterial regulatory proteins, tetR family UP12_RS02160 PF01022 Bacterial regulatory protein, arsR family UP12_RS02165 PF00155 Aminotransferase class I and II UP12_RS02165 PF00392 Bacterial regulatory proteins, gntR family UP12_RS02170 PF00202 Aminotransferase class-III UP12_RS02175 PF13520 Amino acid permease UP12_RS02180 PF00171 Aldehyde dehydrogenase family UP12_RS02185 PF02525 Flavodoxin-like fold UP12_RS02190 PF07987 Domain of unkown function (DUF1775) UP12_RS02195 PF04234 CopC domain UP12_RS02195 PF05425 Copper resistance protein D UP12_RS02195 PF13115 YtkA-like UP12_RS02200 PF02378 Phosphotransferase system, EIIC UP12_RS02200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_RS02205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_RS02210 PF08125 Mannitol dehydrogenase C-terminal domain UP12_RS02210 PF01232 Mannitol dehydrogenase Rossmann domain UP12_RS02215 PF00672 HAMP domain UP12_RS02215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS02215 PF02743 Cache domain UP12_RS02235 PF12681 Glyoxalase-like domain UP12_RS02240 PF05901 Excalibur calcium-binding domain UP12_RS02250 PF03746 LamB/YcsF family UP12_RS02255 PF01566 Natural resistance-associated macrophage protein UP12_RS02260 PF07286 Protein of unknown function (DUF1445) UP12_RS02265 PF02682 Carboxyltransferase domain, subdomain C and D UP12_RS02270 PF02626 Carboxyltransferase domain, subdomain A and B UP12_RS02275 PF01614 Bacterial transcriptional regulator UP12_RS02275 PF09339 IclR helix-turn-helix domain UP12_RS02280 PF02525 Flavodoxin-like fold UP12_RS02285 PF13472 GDSL-like Lipase/Acylhydrolase family UP12_RS02295 PF05043 Mga helix-turn-helix domain UP12_RS02295 PF08279 HTH domain UP12_RS02295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_RS02295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_RS02295 PF00874 PRD domain UP12_RS02300 PF13649 Methyltransferase domain UP12_RS02310 PF16242 Pyridoxamine 5'-phosphate oxidase like UP12_RS02330 PF12823 Domain of unknown function (DUF3817) UP12_RS02335 PF07729 FCD domain UP12_RS02335 PF00392 Bacterial regulatory proteins, gntR family UP12_RS02340 PF12833 Helix-turn-helix domain UP12_RS02340 PF02311 AraC-like ligand binding domain UP12_RS02345 PF00892 EamA-like transporter family UP12_RS02350 PF00180 Isocitrate/isopropylmalate dehydrogenase UP12_RS02355 PF01131 DNA topoisomerase UP12_RS02355 PF01751 Toprim domain UP12_RS02365 PF00990 Diguanylate cyclase, GGDEF domain UP12_RS02370 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) UP12_RS02380 PF03170 Bacterial cellulose synthase subunit UP12_RS02385 PF13520 Amino acid permease UP12_RS02390 PF00205 Thiamine pyrophosphate enzyme, central domain UP12_RS02390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UP12_RS02390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UP12_RS02395 PF04740 LXG domain of WXG superfamily UP12_RS02395 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues UP12_RS02395 PF14449 Pre-toxin TG UP12_RS02415 PF13302 Acetyltransferase (GNAT) domain UP12_RS02420 PF01566 Natural resistance-associated macrophage protein UP12_RS02425 PF04226 Transglycosylase associated protein UP12_RS02430 PF12787 EcsC protein family UP12_RS02435 PF03480 Bacterial extracellular solute-binding protein, family 7 UP12_RS02440 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain UP12_RS02440 PF17203 Single cache domain 3 UP12_RS02440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS02445 PF08279 HTH domain UP12_RS02445 PF00072 Response regulator receiver domain UP12_RS02450 PF00375 Sodium:dicarboxylate symporter family UP12_RS02455 PF01594 AI-2E family transporter UP12_RS02460 PF00375 Sodium:dicarboxylate symporter family UP12_RS02465 PF00005 ABC transporter UP12_RS02480 PF00085 Thioredoxin UP12_RS02485 PF01820 D-ala D-ala ligase N-terminus UP12_RS02485 PF07478 D-ala D-ala ligase C-terminus UP12_RS02490 PF01225 Mur ligase family, catalytic domain UP12_RS02490 PF02875 Mur ligase family, glutamate ligase domain UP12_RS02490 PF08245 Mur ligase middle domain UP12_RS02495 PF00561 alpha/beta hydrolase fold UP12_RS02505 PF00270 DEAD/DEAH box helicase UP12_RS02505 PF00271 Helicase conserved C-terminal domain UP12_RS02510 PF03703 Bacterial PH domain UP12_RS02515 PF03703 Bacterial PH domain UP12_RS02520 PF01694 Rhomboid family UP12_RS02525 PF01648 4'-phosphopantetheinyl transferase superfamily UP12_RS02535 PF01168 Alanine racemase, N-terminal domain UP12_RS02535 PF00842 Alanine racemase, C-terminal domain UP12_RS02540 PF01402 Ribbon-helix-helix protein, copG family UP12_RS02545 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system UP12_RS02550 PF08678 Rsbr N terminal UP12_RS02550 PF01740 STAS domain UP12_RS02555 PF01740 STAS domain UP12_RS02560 PF13581 Histidine kinase-like ATPase domain UP12_RS02565 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain UP12_RS02565 PF07228 Stage II sporulation protein E (SpoIIE) UP12_RS02570 PF01740 STAS domain UP12_RS02575 PF13581 Histidine kinase-like ATPase domain UP12_RS02580 PF04545 Sigma-70, region 4 UP12_RS02580 PF04539 Sigma-70 region 3 UP12_RS02580 PF04542 Sigma-70 region 2 UP12_RS02585 PF07228 Stage II sporulation protein E (SpoIIE) UP12_RS02590 PF17674 HHH domain UP12_RS02590 PF00575 S1 RNA binding domain UP12_RS02590 PF09371 Tex-like protein N-terminal domain UP12_RS02590 PF16921 Tex protein YqgF-like domain UP12_RS02595 PF17283 SprT-like zinc ribbon domain UP12_RS02595 PF10263 SprT-like family UP12_RS02600 PF00676 Dehydrogenase E1 component UP12_RS02605 PF02779 Transketolase, pyrimidine binding domain UP12_RS02605 PF02780 Transketolase, C-terminal domain UP12_RS02610 PF00364 Biotin-requiring enzyme UP12_RS02610 PF02817 e3 binding domain UP12_RS02610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UP12_RS02615 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS02615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UP12_RS02620 PF01590 GAF domain UP12_RS02620 PF02954 Bacterial regulatory protein, Fis family UP12_RS02620 PF00158 Sigma-54 interaction domain UP12_RS02660 PF00589 Phage integrase family UP12_RS02660 PF14659 Phage integrase, N-terminal SAM-like domain UP12_RS02665 PF06114 IrrE N-terminal-like domain UP12_RS02670 PF01381 Helix-turn-helix UP12_RS02690 PF06125 Bacterial protein of unknown function (DUF961) UP12_RS02705 PF02486 Replication initiation factor UP12_RS02705 PF18106 Rolling Circle replication initiation protein N-terminal domain UP12_RS02750 PF00437 Type II/IV secretion system protein UP12_RS02770 PF12642 Conjugative transposon protein TcpC UP12_RS02780 PF12648 TcpE family UP12_RS02795 PF00877 NlpC/P60 family UP12_RS02810 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS02820 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS02820 PF00107 Zinc-binding dehydrogenase UP12_RS02830 PF00561 alpha/beta hydrolase fold UP12_RS02845 PF00082 Subtilase family UP12_RS02850 PF00313 'Cold-shock' DNA-binding domain UP12_RS02855 PF02559 CarD-like/TRCF domain UP12_RS02860 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS02860 PF00107 Zinc-binding dehydrogenase UP12_RS02865 PF13411 MerR HTH family regulatory protein UP12_RS02870 PF00722 Glycosyl hydrolases family 16 UP12_RS02875 PF00440 Bacterial regulatory proteins, tetR family UP12_RS02880 PF07690 Major Facilitator Superfamily UP12_RS02885 PF07859 alpha/beta hydrolase fold UP12_RS02905 PF00106 short chain dehydrogenase UP12_RS02925 PF00710 Asparaginase, N-terminal UP12_RS02925 PF17763 Glutaminase/Asparaginase C-terminal domain UP12_RS02930 PF00561 alpha/beta hydrolase fold UP12_RS02940 PF08361 MAATS-type transcriptional repressor, C-terminal region UP12_RS02940 PF00440 Bacterial regulatory proteins, tetR family UP12_RS02945 PF07690 Major Facilitator Superfamily UP12_RS02950 PF01757 Acyltransferase family UP12_RS02955 PF03176 MMPL family UP12_RS02960 PF07730 Histidine kinase UP12_RS02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS02965 PF00072 Response regulator receiver domain UP12_RS02965 PF00196 Bacterial regulatory proteins, luxR family UP12_RS02985 PF00583 Acetyltransferase (GNAT) family UP12_RS02990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_RS03000 PF00440 Bacterial regulatory proteins, tetR family UP12_RS03005 PF01872 RibD C-terminal domain UP12_RS03010 PF01047 MarR family UP12_RS03015 PF00881 Nitroreductase family UP12_RS03030 PF01381 Helix-turn-helix UP12_RS03030 PF07883 Cupin domain UP12_RS03035 PF01810 LysE type translocator UP12_RS03040 PF00583 Acetyltransferase (GNAT) family UP12_RS03045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS03045 PF03466 LysR substrate binding domain UP12_RS03050 PF00248 Aldo/keto reductase family UP12_RS03060 PF01596 O-methyltransferase UP12_RS03070 PF03591 AzlC protein UP12_RS03075 PF00892 EamA-like transporter family UP12_RS03085 PF00375 Sodium:dicarboxylate symporter family UP12_RS03125 PF02769 AIR synthase related protein, C-terminal domain UP12_RS03125 PF00586 AIR synthase related protein, N-terminal domain UP12_RS03130 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE UP12_RS03135 PF00814 Glycoprotease family UP12_RS03140 PF00583 Acetyltransferase (GNAT) family UP12_RS03145 PF00814 Glycoprotease family UP12_RS03150 PF00005 ABC transporter UP12_RS03150 PF16326 ABC transporter C-terminal domain UP12_RS03150 PF12848 ABC transporter UP12_RS03155 PF01967 MoaC family UP12_RS03160 PF02629 CoA binding domain UP12_RS03160 PF06971 Putative DNA-binding protein N-terminus UP12_RS03165 PF02416 mttA/Hcf106 family UP12_RS03170 PF00902 Sec-independent protein translocase protein (TatC) UP12_RS03175 PF00293 NUDIX domain UP12_RS03180 PF14146 Domain of unknown function (DUF4305) UP12_RS03185 PF02517 CPBP intramembrane metalloprotease UP12_RS03190 PF00166 Chaperonin 10 Kd subunit UP12_RS03195 PF00118 TCP-1/cpn60 chaperonin family UP12_RS03200 PF01047 MarR family UP12_RS03205 PF00583 Acetyltransferase (GNAT) family UP12_RS03210 PF04299 Putative FMN-binding domain UP12_RS03230 PF03330 Lytic transglycolase UP12_RS03235 PF07676 WD40-like Beta Propeller Repeat UP12_RS03245 PF07731 Multicopper oxidase UP12_RS03245 PF00394 Multicopper oxidase UP12_RS03245 PF07732 Multicopper oxidase UP12_RS03250 PF00324 Amino acid permease UP12_RS03255 PF01545 Cation efflux family UP12_RS03255 PF16916 Dimerisation domain of Zinc Transporter UP12_RS03260 PF07726 ATPase family associated with various cellular activities (AAA) UP12_RS03260 PF17863 AAA lid domain UP12_RS03265 PF01882 Protein of unknown function DUF58 UP12_RS03270 PF01841 Transglutaminase-like superfamily UP12_RS03270 PF11992 Domain of unknown function (DUF3488) UP12_RS03270 PF13559 Domain of unknown function (DUF4129) UP12_RS03275 PF00117 Glutamine amidotransferase class-I UP12_RS03275 PF02540 NAD synthase UP12_RS03275 PF00958 GMP synthase C terminal domain UP12_RS03295 PF00072 Response regulator receiver domain UP12_RS03295 PF04397 LytTr DNA-binding domain UP12_RS03300 PF13195 Protein of unknown function (DUF4011) UP12_RS03300 PF13087 AAA domain UP12_RS03300 PF13086 AAA domain UP12_RS03305 PF13302 Acetyltransferase (GNAT) domain UP12_RS03310 PF07690 Major Facilitator Superfamily UP12_RS03315 PF03466 LysR substrate binding domain UP12_RS03315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS03320 PF00860 Permease family UP12_RS03330 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_RS03335 PF14044 NETI protein UP12_RS03340 PF00731 AIR carboxylase UP12_RS03345 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain UP12_RS03345 PF02222 ATP-grasp domain UP12_RS03350 PF00206 Lyase UP12_RS03350 PF10397 Adenylosuccinate lyase C-terminus UP12_RS03355 PF01259 SAICAR synthetase UP12_RS03360 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase UP12_RS03370 PF02769 AIR synthase related protein, C-terminal domain UP12_RS03370 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain UP12_RS03370 PF00586 AIR synthase related protein, N-terminal domain UP12_RS03375 PF00156 Phosphoribosyl transferase domain UP12_RS03380 PF02769 AIR synthase related protein, C-terminal domain UP12_RS03380 PF00586 AIR synthase related protein, N-terminal domain UP12_RS03385 PF00551 Formyl transferase UP12_RS03390 PF02142 MGS-like domain UP12_RS03390 PF01808 AICARFT/IMPCHase bienzyme UP12_RS03395 PF02843 Phosphoribosylglycinamide synthetase, C domain UP12_RS03395 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain UP12_RS03395 PF02844 Phosphoribosylglycinamide synthetase, N domain UP12_RS03415 PF00202 Aminotransferase class-III UP12_RS03420 PF01144 Coenzyme A transferase UP12_RS03425 PF01144 Coenzyme A transferase UP12_RS03430 PF07687 Peptidase dimerisation domain UP12_RS03430 PF01546 Peptidase family M20/M25/M40 UP12_RS03435 PF11127 Protein of unknown function (DUF2892) UP12_RS03440 PF01979 Amidohydrolase family UP12_RS03440 PF13382 Adenine deaminase C-terminal domain UP12_RS03445 PF01371 Trp repressor protein UP12_RS03455 PF01645 Conserved region in glutamate synthase UP12_RS03470 PF01884 PcrB family UP12_RS03475 PF13361 UvrD-like helicase C-terminal domain UP12_RS03475 PF00580 UvrD/REP helicase N-terminal domain UP12_RS03480 PF01653 NAD-dependent DNA ligase adenylation domain UP12_RS03480 PF03120 NAD-dependent DNA ligase OB-fold domain UP12_RS03480 PF03119 NAD-dependent DNA ligase C4 zinc finger domain UP12_RS03480 PF12826 Helix-hairpin-helix motif UP12_RS03480 PF00533 BRCA1 C Terminus (BRCT) domain UP12_RS03485 PF07537 CamS sex pheromone cAM373 precursor UP12_RS03495 PF00501 AMP-binding enzyme UP12_RS03495 PF13193 AMP-binding enzyme C-terminal domain UP12_RS03495 PF00550 Phosphopantetheine attachment site UP12_RS03495 PF00668 Condensation domain UP12_RS03500 PF00144 Beta-lactamase UP12_RS03510 PF00975 Thioesterase domain UP12_RS03515 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UP12_RS03515 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UP12_RS03530 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_RS03530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_RS03530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UP12_RS03535 PF00550 Phosphopantetheine attachment site UP12_RS03535 PF00668 Condensation domain UP12_RS03535 PF13193 AMP-binding enzyme C-terminal domain UP12_RS03535 PF00501 AMP-binding enzyme UP12_RS03540 PF00550 Phosphopantetheine attachment site UP12_RS03540 PF13193 AMP-binding enzyme C-terminal domain UP12_RS03540 PF00501 AMP-binding enzyme UP12_RS03540 PF00668 Condensation domain UP12_RS03545 PF00550 Phosphopantetheine attachment site UP12_RS03545 PF02801 Beta-ketoacyl synthase, C-terminal domain UP12_RS03545 PF00109 Beta-ketoacyl synthase, N-terminal domain UP12_RS03545 PF00668 Condensation domain UP12_RS03545 PF00698 Acyl transferase domain UP12_RS03545 PF16197 Ketoacyl-synthetase C-terminal extension UP12_RS03550 PF16197 Ketoacyl-synthetase C-terminal extension UP12_RS03550 PF00109 Beta-ketoacyl synthase, N-terminal domain UP12_RS03550 PF14765 Polyketide synthase dehydratase UP12_RS03550 PF00550 Phosphopantetheine attachment site UP12_RS03550 PF02801 Beta-ketoacyl synthase, C-terminal domain UP12_RS03550 PF08659 KR domain UP12_RS03555 PF00109 Beta-ketoacyl synthase, N-terminal domain UP12_RS03555 PF16197 Ketoacyl-synthetase C-terminal extension UP12_RS03555 PF00550 Phosphopantetheine attachment site UP12_RS03555 PF02801 Beta-ketoacyl synthase, C-terminal domain UP12_RS03555 PF00698 Acyl transferase domain UP12_RS03555 PF00668 Condensation domain UP12_RS03560 PF01636 Phosphotransferase enzyme family UP12_RS03565 PF00245 Alkaline phosphatase UP12_RS03570 PF02308 MgtC family UP12_RS03575 PF00474 Sodium:solute symporter family UP12_RS03580 PF02686 Glu-tRNAGln amidotransferase C subunit UP12_RS03585 PF01425 Amidase UP12_RS03590 PF02934 GatB/GatE catalytic domain UP12_RS03590 PF02637 GatB domain UP12_RS03595 PF00440 Bacterial regulatory proteins, tetR family UP12_RS03600 PF00873 AcrB/AcrD/AcrF family UP12_RS03605 PF01156 Inosine-uridine preferring nucleoside hydrolase UP12_RS03610 PF00781 Diacylglycerol kinase catalytic domain UP12_RS03615 PF05958 tRNA (Uracil-5-)-methyltransferase UP12_RS03615 PF01938 TRAM domain UP12_RS03635 PF01207 Dihydrouridine synthase (Dus) UP12_RS03645 PF01380 SIS domain UP12_RS03645 PF01418 Helix-turn-helix domain, rpiR family UP12_RS03650 PF02378 Phosphotransferase system, EIIC UP12_RS03650 PF00367 phosphotransferase system, EIIB UP12_RS03655 PF02056 Family 4 glycosyl hydrolase UP12_RS03655 PF11975 Family 4 glycosyl hydrolase C-terminal domain UP12_RS03665 PF02082 Transcriptional regulator UP12_RS03670 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS03680 PF13021 Domain of unknown function (DUF3885) UP12_RS03685 PF02056 Family 4 glycosyl hydrolase UP12_RS03685 PF11975 Family 4 glycosyl hydrolase C-terminal domain UP12_RS03690 PF01380 SIS domain UP12_RS03690 PF01418 Helix-turn-helix domain, rpiR family UP12_RS03695 PF07690 Major Facilitator Superfamily UP12_RS03705 PF03466 LysR substrate binding domain UP12_RS03705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS03715 PF13037 Domain of unknown function (DUF3898) UP12_RS03715 PF13039 Protein of unknown function (DUF3900) UP12_RS03720 PF00483 Nucleotidyl transferase UP12_RS03725 PF16363 GDP-mannose 4,6 dehydratase UP12_RS03730 PF03407 Nucleotide-diphospho-sugar transferase UP12_RS03735 PF00535 Glycosyl transferase family 2 UP12_RS03740 PF03407 Nucleotide-diphospho-sugar transferase UP12_RS03745 PF07690 Major Facilitator Superfamily UP12_RS03750 PF05223 NTF2-like N-terminal transpeptidase domain UP12_RS03750 PF03717 Penicillin-binding Protein dimerisation domain UP12_RS03750 PF00905 Penicillin binding protein transpeptidase domain UP12_RS03755 PF00939 Sodium:sulfate symporter transmembrane region UP12_RS03770 PF00011 Hsp20/alpha crystallin family UP12_RS03785 PF13520 Amino acid permease UP12_RS03790 PF13181 Tetratricopeptide repeat UP12_RS03790 PF00535 Glycosyl transferase family 2 UP12_RS03795 PF16326 ABC transporter C-terminal domain UP12_RS03795 PF00005 ABC transporter UP12_RS03795 PF12848 ABC transporter UP12_RS03800 PF13411 MerR HTH family regulatory protein UP12_RS03805 PF07690 Major Facilitator Superfamily UP12_RS03810 PF12848 ABC transporter UP12_RS03810 PF00005 ABC transporter UP12_RS03815 PF00270 DEAD/DEAH box helicase UP12_RS03815 PF00271 Helicase conserved C-terminal domain UP12_RS03820 PF16884 N-terminal domain of oxidoreductase UP12_RS03820 PF00107 Zinc-binding dehydrogenase UP12_RS03825 PF11486 Protein of unknown function (DUF3212) UP12_RS03830 PF11181 Heat induced stress protein YflT UP12_RS03840 PF00925 GTP cyclohydrolase II UP12_RS03840 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase UP12_RS03845 PF03781 Sulfatase-modifying factor enzyme 1 UP12_RS03855 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UP12_RS03855 PF01872 RibD C-terminal domain UP12_RS03865 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain UP12_RS03865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS03870 PF12431 Transcriptional regulator UP12_RS03870 PF00072 Response regulator receiver domain UP12_RS03870 PF08279 HTH domain UP12_RS03875 PF03401 Tripartite tricarboxylate transporter family receptor UP12_RS03880 PF03600 Citrate transporter UP12_RS03890 PF05870 Phenolic acid decarboxylase (PAD) UP12_RS03895 PF03551 Transcriptional regulator PadR-like family UP12_RS03895 PF10400 Virulence activator alpha C-term UP12_RS03900 PF02898 Nitric oxide synthase, oxygenase domain UP12_RS03905 PF00708 Acylphosphatase UP12_RS03910 PF03473 MOSC domain UP12_RS03910 PF03475 3-alpha domain UP12_RS03915 PF00557 Metallopeptidase family M24 UP12_RS03920 PF00367 phosphotransferase system, EIIB UP12_RS03920 PF02378 Phosphotransferase system, EIIC UP12_RS03925 PF05675 Protein of unknown function (DUF817) UP12_RS03935 PF14172 Domain of unknown function (DUF4309) UP12_RS03940 PF00884 Sulfatase UP12_RS03945 PF00282 Pyridoxal-dependent decarboxylase conserved domain UP12_RS03950 PF00672 HAMP domain UP12_RS03950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS03955 PF09350 Domain of unknown function (DUF1992) UP12_RS03960 PF02378 Phosphotransferase system, EIIC UP12_RS03960 PF00367 phosphotransferase system, EIIB UP12_RS03965 PF00128 Alpha amylase, catalytic domain UP12_RS03965 PF16657 Maltogenic Amylase, C-terminal domain UP12_RS03970 PF00392 Bacterial regulatory proteins, gntR family UP12_RS03970 PF07702 UTRA domain UP12_RS03980 PF02872 5'-nucleotidase, C-terminal domain UP12_RS03980 PF00149 Calcineurin-like phosphoesterase UP12_RS03985 PF01965 DJ-1/PfpI family UP12_RS03990 PF06569 Protein of unknown function (DUF1128) UP12_RS03995 PF01235 Sodium:alanine symporter family UP12_RS04000 PF01451 Low molecular weight phosphotyrosine protein phosphatase UP12_RS04010 PF03631 Virulence factor BrkB UP12_RS04015 PF07690 Major Facilitator Superfamily UP12_RS04025 PF01699 Sodium/calcium exchanger protein UP12_RS04030 PF14167 YfkD-like protein UP12_RS04035 PF01709 Transcriptional regulator UP12_RS04045 PF00924 Mechanosensitive ion channel UP12_RS04050 PF04055 Radical SAM superfamily UP12_RS04050 PF08756 YfkB-like domain UP12_RS04060 PF01522 Polysaccharide deacetylase UP12_RS04070 PF01544 CorA-like Mg2+ transporter protein UP12_RS04080 PF00730 HhH-GPD superfamily base excision DNA repair protein UP12_RS04085 PF01938 TRAM domain UP12_RS04085 PF05958 tRNA (Uracil-5-)-methyltransferase UP12_RS04090 PF00440 Bacterial regulatory proteins, tetR family UP12_RS04090 PF18665 Tetracyclin repressor-like, C-terminal domain UP12_RS04110 PF13411 MerR HTH family regulatory protein UP12_RS04110 PF07739 TipAS antibiotic-recognition domain UP12_RS04115 PF07690 Major Facilitator Superfamily UP12_RS04130 PF03129 Anticodon binding domain UP12_RS04130 PF02824 TGS domain UP12_RS04130 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UP12_RS04130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UP12_RS04170 PF00893 Small Multidrug Resistance protein UP12_RS04175 PF00893 Small Multidrug Resistance protein UP12_RS04180 PF00440 Bacterial regulatory proteins, tetR family UP12_RS04180 PF17934 Tetracyclin repressor-like, C-terminal domain UP12_RS04195 PF00657 GDSL-like Lipase/Acylhydrolase UP12_RS04200 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS04205 PF01497 Periplasmic binding protein UP12_RS04205 PF12833 Helix-turn-helix domain UP12_RS04210 PF01497 Periplasmic binding protein UP12_RS04215 PF00664 ABC transporter transmembrane region UP12_RS04215 PF00005 ABC transporter UP12_RS04220 PF02694 Uncharacterised BCR, YnfA/UPF0060 family UP12_RS04225 PF04542 Sigma-70 region 2 UP12_RS04225 PF04545 Sigma-70, region 4 UP12_RS04240 PF00107 Zinc-binding dehydrogenase UP12_RS04240 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS04245 PF12867 DinB superfamily UP12_RS04255 PF01047 MarR family UP12_RS04260 PF09924 Uncharacterised conserved protein (DUF2156) UP12_RS04260 PF03706 Lysylphosphatidylglycerol synthase TM region UP12_RS04275 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS04285 PF00881 Nitroreductase family UP12_RS04295 PF01370 NAD dependent epimerase/dehydratase family UP12_RS04295 PF08338 Domain of unknown function (DUF1731) UP12_RS04300 PF02631 RecX family UP12_RS04305 PF08838 Protein of unknown function (DUF1811) UP12_RS04310 PF08176 Small acid-soluble spore protein K family UP12_RS04315 PF14043 WVELL protein UP12_RS04320 PF00535 Glycosyl transferase family 2 UP12_RS04325 PF09586 Bacterial membrane protein YfhO UP12_RS04330 PF01494 FAD binding domain UP12_RS04345 PF00190 Cupin UP12_RS04350 PF04545 Sigma-70, region 4 UP12_RS04360 PF04307 LexA-binding, inner membrane-associated putative hydrolase UP12_RS04365 PF14815 NUDIX domain UP12_RS04365 PF00730 HhH-GPD superfamily base excision DNA repair protein UP12_RS04380 PF04259 Small, acid-soluble spore protein, gamma-type UP12_RS04390 PF04167 Protein of unknown function (DUF402) UP12_RS04395 PF00664 ABC transporter transmembrane region UP12_RS04395 PF00005 ABC transporter UP12_RS04400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_RS04400 PF00005 ABC transporter UP12_RS04405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_RS04405 PF00005 ABC transporter UP12_RS04410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_RS04415 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS04420 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS04420 PF12911 N-terminal TM domain of oligopeptide transport permease C UP12_RS04425 PF06081 Aromatic acid exporter family member 1 UP12_RS04430 PF00202 Aminotransferase class-III UP12_RS04435 PF00578 AhpC/TSA family UP12_RS04440 PF01475 Ferric uptake regulator family UP12_RS04445 PF11023 Zinc-ribbon containing domain UP12_RS04450 PF18576 Helix-turn-helix domain UP12_RS04450 PF14540 Nucleotidyltransferase-like UP12_RS04595 PF00884 Sulfatase UP12_RS04600 PF10502 Signal peptidase, peptidase S26 UP12_RS04605 PF01053 Cys/Met metabolism PLP-dependent enzyme UP12_RS04615 PF00005 ABC transporter UP12_RS04650 PF08331 Domain of unknown function (DUF1730) UP12_RS04655 PF12671 Putative amidase domain UP12_RS04660 PF00588 SpoU rRNA Methylase family UP12_RS04665 PF15493 Domain of unknown function, YrpD UP12_RS04670 PF06798 PrkA serine protein kinase C-terminal domain UP12_RS04670 PF08298 PrkA AAA domain UP12_RS04675 PF04285 Protein of unknown function (DUF444) UP12_RS04685 PF07690 Major Facilitator Superfamily UP12_RS04690 PF03358 NADPH-dependent FMN reductase UP12_RS04700 PF00313 'Cold-shock' DNA-binding domain UP12_RS04705 PF00990 Diguanylate cyclase, GGDEF domain UP12_RS04705 PF07694 5TMR of 5TMR-LYT UP12_RS04720 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) UP12_RS04730 PF07875 Coat F domain UP12_RS04735 PF13426 PAS domain UP12_RS04735 PF00989 PAS fold UP12_RS04735 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS04735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS04735 PF13188 PAS domain UP12_RS04740 PF00565 Staphylococcal nuclease homologue UP12_RS04740 PF00149 Calcineurin-like phosphoesterase UP12_RS04740 PF00746 LPXTG cell wall anchor motif UP12_RS04740 PF02872 5'-nucleotidase, C-terminal domain UP12_RS04745 PF04203 Sortase domain UP12_RS04750 PF01479 S4 domain UP12_RS04750 PF00849 RNA pseudouridylate synthase UP12_RS04760 PF13419 Haloacid dehalogenase-like hydrolase UP12_RS04765 PF00795 Carbon-nitrogen hydrolase UP12_RS04765 PF00583 Acetyltransferase (GNAT) family UP12_RS04780 PF05651 Putative sugar diacid recognition UP12_RS04780 PF13556 PucR C-terminal helix-turn-helix domain UP12_RS04780 PF17853 GGDEF-like domain UP12_RS04785 PF00202 Aminotransferase class-III UP12_RS04790 PF04309 Glycerol-3-phosphate responsive antiterminator UP12_RS04795 PF00230 Major intrinsic protein UP12_RS04800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain UP12_RS04800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain UP12_RS04805 PF16901 C-terminal domain of alpha-glycerophosphate oxidase UP12_RS04805 PF01266 FAD dependent oxidoreductase UP12_RS04810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UP12_RS04810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain UP12_RS04810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I UP12_RS04810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II UP12_RS04815 PF13185 GAF domain UP12_RS04815 PF07730 Histidine kinase UP12_RS04820 PF00196 Bacterial regulatory proteins, luxR family UP12_RS04820 PF00072 Response regulator receiver domain UP12_RS04830 PF14148 YhdB-like protein UP12_RS04835 PF13028 Protein of unknown function (DUF3889) UP12_RS04840 PF06628 Catalase-related immune-responsive UP12_RS04840 PF00199 Catalase UP12_RS04845 PF02082 Transcriptional regulator UP12_RS04850 PF00175 Oxidoreductase NAD-binding domain UP12_RS04850 PF00970 Oxidoreductase FAD-binding domain UP12_RS04850 PF00042 Globin UP12_RS04855 PF04293 SpoVR like protein UP12_RS04860 PF00245 Alkaline phosphatase UP12_RS04865 PF01476 LysM domain UP12_RS04865 PF00877 NlpC/P60 family UP12_RS04870 PF17453 Sigma-M inhibitor UP12_RS04875 PF13800 Sigma factor regulator N-terminal UP12_RS04875 PF13791 Sigma factor regulator C-terminal UP12_RS04880 PF04542 Sigma-70 region 2 UP12_RS04880 PF08281 Sigma-70, region 4 UP12_RS04885 PF01553 Acyltransferase UP12_RS04890 PF01595 Cyclin M transmembrane N-terminal domain UP12_RS04890 PF03471 Transporter associated domain UP12_RS04890 PF00571 CBS domain UP12_RS04895 PF13411 MerR HTH family regulatory protein UP12_RS04900 PF03471 Transporter associated domain UP12_RS04900 PF00571 CBS domain UP12_RS04900 PF01595 Cyclin M transmembrane N-terminal domain UP12_RS04910 PF02537 CrcB-like protein, Camphor Resistance (CrcB) UP12_RS04915 PF02537 CrcB-like protein, Camphor Resistance (CrcB) UP12_RS04935 PF01522 Polysaccharide deacetylase UP12_RS04940 PF01063 Amino-transferase class IV UP12_RS04945 PF00582 Universal stress protein family UP12_RS04950 PF00005 ABC transporter UP12_RS04950 PF00664 ABC transporter transmembrane region UP12_RS04955 PF00664 ABC transporter transmembrane region UP12_RS04955 PF00005 ABC transporter UP12_RS04960 PF13460 NAD(P)H-binding UP12_RS04965 PF00269 Small, acid-soluble spore proteins, alpha/beta type UP12_RS04970 PF00005 ABC transporter UP12_RS04970 PF03459 TOBE domain UP12_RS04970 PF17912 MalK OB fold domain UP12_RS04975 PF13556 PucR C-terminal helix-turn-helix domain UP12_RS04980 PF17277 Family of unknown function (DUF5342) UP12_RS04985 PF14398 YheC/D like ATP-grasp UP12_RS04990 PF14398 YheC/D like ATP-grasp UP12_RS04995 PF04286 Protein of unknown function (DUF445) UP12_RS05000 PF06133 Control of competence regulator ComK, YlbF/YmcA UP12_RS05010 PF04055 Radical SAM superfamily UP12_RS05015 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) UP12_RS05020 PF00999 Sodium/hydrogen exchanger family UP12_RS05025 PF02080 TrkA-C domain UP12_RS05035 PF00378 Enoyl-CoA hydratase/isomerase UP12_RS05040 PF14120 YhzD-like protein UP12_RS05045 PF00149 Calcineurin-like phosphoesterase UP12_RS05050 PF13514 AAA domain UP12_RS05055 PF01966 HD domain UP12_RS05060 PF14147 Sporulation protein YhaL UP12_RS05070 PF09680 Family of unknown function UP12_RS05075 PF11667 Putative zincin peptidase UP12_RS05080 PF08963 Protein of unknown function (DUF1878) UP12_RS05085 PF01047 MarR family UP12_RS05090 PF12732 YtxH-like protein UP12_RS05100 PF17099 Tryptophan transporter TrpP UP12_RS05105 PF00266 Aminotransferase class-V UP12_RS05110 PF01230 HIT domain UP12_RS05115 PF00005 ABC transporter UP12_RS05120 PF05975 Bacterial ABC transporter protein EcsB UP12_RS05125 PF12787 EcsC protein family UP12_RS05130 PF07687 Peptidase dimerisation domain UP12_RS05130 PF01546 Peptidase family M20/M25/M40 UP12_RS05140 PF03992 Antibiotic biosynthesis monooxygenase UP12_RS05145 PF00905 Penicillin binding protein transpeptidase domain UP12_RS05145 PF00912 Transglycosylase UP12_RS05150 PF01208 Uroporphyrinogen decarboxylase (URO-D) UP12_RS05155 PF00762 Ferrochelatase UP12_RS05160 PF01593 Flavin containing amine oxidoreductase UP12_RS05165 PF17932 Tetracyclin repressor-like, C-terminal domain UP12_RS05165 PF00440 Bacterial regulatory proteins, tetR family UP12_RS05175 PF05343 M42 glutamyl aminopeptidase UP12_RS05180 PF00375 Sodium:dicarboxylate symporter family UP12_RS05185 PF12706 Beta-lactamase superfamily domain UP12_RS05190 PF10437 Bacterial lipoate protein ligase C-terminus UP12_RS05190 PF03099 Biotin/lipoate A/B protein ligase family UP12_RS05195 PF00501 AMP-binding enzyme UP12_RS05195 PF13193 AMP-binding enzyme C-terminal domain UP12_RS05205 PF01435 Peptidase family M48 UP12_RS05205 PF16491 CAAX prenyl protease N-terminal, five membrane helices UP12_RS05210 PF00082 Subtilase family UP12_RS05210 PF05922 Peptidase inhibitor I9 UP12_RS05215 PF00300 Histidine phosphatase superfamily (branch 1) UP12_RS05220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS05225 PF01266 FAD dependent oxidoreductase UP12_RS05225 PF00355 Rieske [2Fe-2S] domain UP12_RS05235 PF08858 IDEAL domain UP12_RS05240 PF06338 ComK protein UP12_RS05245 PF14031 Putative serine dehydratase domain UP12_RS05245 PF01168 Alanine racemase, N-terminal domain UP12_RS05255 PF00392 Bacterial regulatory proteins, gntR family UP12_RS05255 PF00155 Aminotransferase class I and II UP12_RS05260 PF07690 Major Facilitator Superfamily UP12_RS05265 PF01337 Barstar (barnase inhibitor) UP12_RS05270 PF03816 Cell envelope-related transcriptional attenuator domain UP12_RS05280 PF09335 SNARE associated Golgi protein UP12_RS05285 PF10502 Signal peptidase, peptidase S26 UP12_RS05290 PF05145 Transition state regulatory protein AbrB UP12_RS05300 PF01435 Peptidase family M48 UP12_RS05305 PF07681 DoxX UP12_RS05310 PF02915 Rubrerythrin UP12_RS05315 PF12705 PD-(D/E)XK nuclease superfamily UP12_RS05320 PF00580 UvrD/REP helicase N-terminal domain UP12_RS05320 PF13361 UvrD-like helicase C-terminal domain UP12_RS05320 PF12705 PD-(D/E)XK nuclease superfamily UP12_RS05325 PF00149 Calcineurin-like phosphoesterase UP12_RS05325 PF12320 Type 5 capsule protein repressor C-terminal domain UP12_RS05330 PF13476 AAA domain UP12_RS05340 PF10676 Spore germination protein gerPA/gerPF UP12_RS05345 PF10970 Spore germination protein GerPE UP12_RS05355 PF10737 Spore germination protein GerPC UP12_RS05360 PF10803 Spore germination GerPB UP12_RS05365 PF10676 Spore germination protein gerPA/gerPF UP12_RS05375 PF08757 CotH kinase protein UP12_RS05385 PF01557 Fumarylacetoacetate (FAA) hydrolase family UP12_RS05390 PF07457 Protein of unknown function (DUF1516) UP12_RS05400 PF13537 Glutamine amidotransferase domain UP12_RS05400 PF00733 Asparagine synthase UP12_RS05405 PF01593 Flavin containing amine oxidoreductase UP12_RS05410 PF01593 Flavin containing amine oxidoreductase UP12_RS05420 PF01554 MatE UP12_RS05425 PF02311 AraC-like ligand binding domain UP12_RS05425 PF12833 Helix-turn-helix domain UP12_RS05450 PF00202 Aminotransferase class-III UP12_RS05455 PF00282 Pyridoxal-dependent decarboxylase conserved domain UP12_RS05460 PF04183 IucA / IucC family UP12_RS05460 PF06276 Ferric iron reductase FhuF-like transporter UP12_RS05470 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) UP12_RS05475 PF04183 IucA / IucC family UP12_RS05475 PF06276 Ferric iron reductase FhuF-like transporter UP12_RS05485 PF00809 Pterin binding enzyme UP12_RS05485 PF02574 Homocysteine S-methyltransferase UP12_RS05485 PF02965 Vitamin B12 dependent methionine synthase, activation domain UP12_RS05485 PF02607 B12 binding domain UP12_RS05485 PF02310 B12 binding domain UP12_RS05490 PF02574 Homocysteine S-methyltransferase UP12_RS05490 PF02219 Methylenetetrahydrofolate reductase UP12_RS05495 PF04461 Protein of unknown function (DUF520) UP12_RS05500 PF17783 CvfB-like winged helix domain UP12_RS05500 PF13509 S1 domain UP12_RS05505 PF02608 ABC transporter substrate-binding protein PnrA-like UP12_RS05510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS05510 PF00672 HAMP domain UP12_RS05510 PF02743 Cache domain UP12_RS05515 PF02645 Uncharacterised protein, DegV family COG1307 UP12_RS05520 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_RS05520 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 UP12_RS05525 PF12690 Intracellular proteinase inhibitor UP12_RS05530 PF12758 Protein of unknown function (DUF3813) UP12_RS05545 PF00326 Prolyl oligopeptidase family UP12_RS05550 PF01883 Iron-sulfur cluster assembly protein UP12_RS05555 PF01565 FAD binding domain UP12_RS05560 PF07690 Major Facilitator Superfamily UP12_RS05565 PF01118 Semialdehyde dehydrogenase, NAD binding domain UP12_RS05565 PF02774 Semialdehyde dehydrogenase, dimerisation domain UP12_RS05570 PF01960 ArgJ family UP12_RS05575 PF00696 Amino acid kinase family UP12_RS05580 PF00202 Aminotransferase class-III UP12_RS05585 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain UP12_RS05585 PF00117 Glutamine amidotransferase class-I UP12_RS05590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UP12_RS05590 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP12_RS05595 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain UP12_RS05595 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UP12_RS05600 PF14168 YjzC-like protein UP12_RS05605 PF07690 Major Facilitator Superfamily UP12_RS05610 PF11151 Protein of unknown function (DUF2929) UP12_RS05625 PF02608 ABC transporter substrate-binding protein PnrA-like UP12_RS05630 PF10815 ComZ UP12_RS05640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal UP12_RS05640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III UP12_RS05645 PF02801 Beta-ketoacyl synthase, C-terminal domain UP12_RS05645 PF00109 Beta-ketoacyl synthase, N-terminal domain UP12_RS05650 PF10026 Predicted Zn-dependent protease (DUF2268) UP12_RS05655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_RS05655 PF00005 ABC transporter UP12_RS05660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_RS05660 PF00005 ABC transporter UP12_RS05665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_RS05670 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS05675 PF12911 N-terminal TM domain of oligopeptide transport permease C UP12_RS05675 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS05680 PF12227 Protein of unknown function (DUF3603) UP12_RS05685 PF00579 tRNA synthetases class I (W and Y) UP12_RS05690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_RS05695 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS05700 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS05700 PF12911 N-terminal TM domain of oligopeptide transport permease C UP12_RS05705 PF00005 ABC transporter UP12_RS05705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_RS05710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_RS05710 PF00005 ABC transporter UP12_RS05720 PF13508 Acetyltransferase (GNAT) domain UP12_RS05725 PF03960 ArsC family UP12_RS05730 PF03741 Integral membrane protein TerC family UP12_RS05735 PF05389 Negative regulator of genetic competence (MecA) UP12_RS05740 PF13396 Phospholipase_D-nuclease N-terminal UP12_RS05740 PF13091 PLD-like domain UP12_RS05750 PF01432 Peptidase family M3 UP12_RS05750 PF08439 Oligopeptidase F UP12_RS05760 PF01152 Bacterial-like globin UP12_RS05765 PF01464 Transglycosylase SLT domain UP12_RS05770 PF01928 CYTH domain UP12_RS05780 PF04607 Region found in RelA / SpoT proteins UP12_RS05785 PF01513 ATP-NAD kinase UP12_RS05790 PF00849 RNA pseudouridylate synthase UP12_RS05795 PF00149 Calcineurin-like phosphoesterase UP12_RS05800 PF02080 TrkA-C domain UP12_RS05800 PF00999 Sodium/hydrogen exchanger family UP12_RS05800 PF02254 TrkA-N domain UP12_RS05805 PF03070 TENA/THI-4/PQQC family UP12_RS05810 PF02581 Thiamine monophosphate synthase UP12_RS05815 PF01266 FAD dependent oxidoreductase UP12_RS05820 PF02597 ThiS family UP12_RS05825 PF05690 Thiazole biosynthesis protein ThiG UP12_RS05830 PF00899 ThiF family UP12_RS05835 PF08543 Phosphomethylpyrimidine kinase UP12_RS05845 PF14153 Spore coat protein CotO UP12_RS05850 PF10612 Spore coat protein Z UP12_RS05855 PF10612 Spore coat protein Z UP12_RS05860 PF07552 Spore Coat Protein X and V domain UP12_RS05870 PF07552 Spore Coat Protein X and V domain UP12_RS05875 PF07098 Protein of unknown function (DUF1360) UP12_RS05890 PF14069 Stage VI sporulation protein F UP12_RS05895 PF13361 UvrD-like helicase C-terminal domain UP12_RS05895 PF00580 UvrD/REP helicase N-terminal domain UP12_RS05905 PF13673 Acetyltransferase (GNAT) domain UP12_RS05915 PF00756 Putative esterase UP12_RS05920 PF01053 Cys/Met metabolism PLP-dependent enzyme UP12_RS05925 PF01053 Cys/Met metabolism PLP-dependent enzyme UP12_RS05935 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS05935 PF00107 Zinc-binding dehydrogenase UP12_RS05945 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit UP12_RS05955 PF00700 Bacterial flagellin C-terminal helical region UP12_RS05955 PF00669 Bacterial flagellin N-terminal helical region UP12_RS05965 PF07690 Major Facilitator Superfamily UP12_RS05970 PF00701 Dihydrodipicolinate synthetase family UP12_RS05975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS05975 PF03466 LysR substrate binding domain UP12_RS05985 PF00302 Chloramphenicol acetyltransferase UP12_RS05990 PF13176 Tetratricopeptide repeat UP12_RS05990 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS06005 PF10852 Protein of unknown function (DUF2651) UP12_RS06015 PF01636 Phosphotransferase enzyme family UP12_RS06020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS06020 PF03466 LysR substrate binding domain UP12_RS06025 PF01177 Asp/Glu/Hydantoin racemase UP12_RS06035 PF03466 LysR substrate binding domain UP12_RS06035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS06040 PF07690 Major Facilitator Superfamily UP12_RS06065 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS06085 PF00842 Alanine racemase, C-terminal domain UP12_RS06085 PF01168 Alanine racemase, N-terminal domain UP12_RS06090 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS06090 PF00107 Zinc-binding dehydrogenase UP12_RS06105 PF00700 Bacterial flagellin C-terminal helical region UP12_RS06105 PF00669 Bacterial flagellin N-terminal helical region UP12_RS06110 PF00700 Bacterial flagellin C-terminal helical region UP12_RS06110 PF00669 Bacterial flagellin N-terminal helical region UP12_RS06115 PF00669 Bacterial flagellin N-terminal helical region UP12_RS06115 PF00700 Bacterial flagellin C-terminal helical region UP12_RS06120 PF00669 Bacterial flagellin N-terminal helical region UP12_RS06120 PF00700 Bacterial flagellin C-terminal helical region UP12_RS06125 PF01494 FAD binding domain UP12_RS06140 PF05908 Poly-gamma-glutamate hydrolase UP12_RS06145 PF06114 IrrE N-terminal-like domain UP12_RS06150 PF01476 LysM domain UP12_RS06150 PF01471 Putative peptidoglycan binding domain UP12_RS06150 PF01510 N-acetylmuramoyl-L-alanine amidase UP12_RS06155 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system UP12_RS06160 PF14171 Toxin SpoIISA, type II toxin-antitoxin system UP12_RS06165 PF01384 Phosphate transporter family UP12_RS06170 PF01865 Protein of unknown function DUF47 UP12_RS06190 PF03611 PTS system sugar-specific permease component UP12_RS06205 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS06205 PF00107 Zinc-binding dehydrogenase UP12_RS06210 PF00676 Dehydrogenase E1 component UP12_RS06215 PF02780 Transketolase, C-terminal domain UP12_RS06215 PF02779 Transketolase, pyrimidine binding domain UP12_RS06215 PF00364 Biotin-requiring enzyme UP12_RS06220 PF00364 Biotin-requiring enzyme UP12_RS06220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UP12_RS06220 PF02817 e3 binding domain UP12_RS06225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UP12_RS06225 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS06240 PF04198 Putative sugar-binding domain UP12_RS06250 PF13520 Amino acid permease UP12_RS06255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_RS06260 PF13180 PDZ domain UP12_RS06265 PF03807 NADP oxidoreductase coenzyme F420-dependent UP12_RS06265 PF14748 Pyrroline-5-carboxylate reductase dimerisation UP12_RS06270 PF04951 D-aminopeptidase UP12_RS06275 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS06280 PF12911 N-terminal TM domain of oligopeptide transport permease C UP12_RS06280 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS06285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_RS06285 PF00005 ABC transporter UP12_RS06290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_RS06295 PF02016 LD-carboxypeptidase N-terminal domain UP12_RS06295 PF17676 LD-carboxypeptidase C-terminal domain UP12_RS06300 PF13378 Enolase C-terminal domain-like UP12_RS06300 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UP12_RS06305 PF00877 NlpC/P60 family UP12_RS06310 PF00005 ABC transporter UP12_RS06310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_RS06320 PF03061 Thioesterase superfamily UP12_RS06340 PF13302 Acetyltransferase (GNAT) domain UP12_RS06345 PF02805 Metal binding domain of Ada UP12_RS06345 PF12833 Helix-turn-helix domain UP12_RS06345 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain UP12_RS06345 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain UP12_RS06350 PF00893 Small Multidrug Resistance protein UP12_RS06355 PF00893 Small Multidrug Resistance protein UP12_RS06365 PF00551 Formyl transferase UP12_RS06365 PF01842 ACT domain UP12_RS06370 PF00696 Amino acid kinase family UP12_RS06370 PF01472 PUA domain UP12_RS06375 PF00171 Aldehyde dehydrogenase family UP12_RS06380 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS06390 PF02566 OsmC-like protein UP12_RS06395 PF01047 MarR family UP12_RS06400 PF02566 OsmC-like protein UP12_RS06405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UP12_RS06410 PF01717 Cobalamin-independent synthase, Catalytic domain UP12_RS06410 PF08267 Cobalamin-independent synthase, N-terminal domain UP12_RS06415 PF00082 Subtilase family UP12_RS06420 PF00486 Transcriptional regulatory protein, C terminal UP12_RS06420 PF00072 Response regulator receiver domain UP12_RS06425 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS06425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS06425 PF00672 HAMP domain UP12_RS06430 PF03413 Peptidase propeptide and YPEB domain UP12_RS06435 PF03413 Peptidase propeptide and YPEB domain UP12_RS06445 PF01769 Divalent cation transporter UP12_RS06445 PF00571 CBS domain UP12_RS06445 PF03448 MgtE intracellular N domain UP12_RS06455 PF03466 LysR substrate binding domain UP12_RS06455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS06465 PF13411 MerR HTH family regulatory protein UP12_RS06475 PF01047 MarR family UP12_RS06480 PF03707 Bacterial signalling protein N terminal repeat UP12_RS06480 PF00990 Diguanylate cyclase, GGDEF domain UP12_RS06480 PF00563 EAL domain UP12_RS06485 PF09335 SNARE associated Golgi protein UP12_RS06490 PF03741 Integral membrane protein TerC family UP12_RS06495 PF04542 Sigma-70 region 2 UP12_RS06500 PF12791 Anti-sigma factor N-terminus UP12_RS06505 PF00269 Small, acid-soluble spore proteins, alpha/beta type UP12_RS06510 PF08876 Domain of unknown function (DUF1836) UP12_RS06515 PF01435 Peptidase family M48 UP12_RS06520 PF02386 Cation transport protein UP12_RS06525 PF04239 Protein of unknown function (DUF421) UP12_RS06535 PF01757 Acyltransferase family UP12_RS06540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS06540 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS06540 PF00989 PAS fold UP12_RS06540 PF13188 PAS domain UP12_RS06540 PF13426 PAS domain UP12_RS06545 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain UP12_RS06545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain UP12_RS06550 PF01008 Initiation factor 2 subunit family UP12_RS06555 PF01636 Phosphotransferase enzyme family UP12_RS06560 PF00155 Aminotransferase class I and II UP12_RS06565 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain UP12_RS06565 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain UP12_RS06575 PF00596 Class II Aldolase and Adducin N-terminal domain UP12_RS06580 PF03079 ARD/ARD' family UP12_RS06585 PF09388 Spo0E like sporulation regulatory protein UP12_RS06590 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS06590 PF02743 Cache domain UP12_RS06590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS06595 PF01047 MarR family UP12_RS06600 PF00691 OmpA family UP12_RS06600 PF13677 Membrane MotB of proton-channel complex MotA/MotB UP12_RS06605 PF01618 MotA/TolQ/ExbB proton channel family UP12_RS06610 PF07724 AAA domain (Cdc48 subfamily) UP12_RS06610 PF17871 AAA lid domain UP12_RS06610 PF10431 C-terminal, D2-small domain, of ClpB protein UP12_RS06610 PF00004 ATPase family associated with various cellular activities (AAA) UP12_RS06620 PF06508 Queuosine biosynthesis protein QueC UP12_RS06625 PF01242 6-pyruvoyl tetrahydropterin synthase UP12_RS06630 PF04055 Radical SAM superfamily UP12_RS06635 PF14489 QueF-like protein UP12_RS06650 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) UP12_RS06660 PF07486 Cell Wall Hydrolase UP12_RS06665 PF01943 Polysaccharide biosynthesis protein UP12_RS06670 PF00578 AhpC/TSA family UP12_RS06680 PF00557 Metallopeptidase family M24 UP12_RS06680 PF01321 Creatinase/Prolidase N-terminal domain UP12_RS06685 PF00356 Bacterial regulatory proteins, lacI family UP12_RS06685 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family UP12_RS06690 PF03123 CAT RNA binding domain UP12_RS06690 PF00874 PRD domain UP12_RS06695 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UP12_RS06695 PF00367 phosphotransferase system, EIIB UP12_RS06695 PF02378 Phosphotransferase system, EIIC UP12_RS06700 PF00381 PTS HPr component phosphorylation site UP12_RS06705 PF02896 PEP-utilising enzyme, TIM barrel domain UP12_RS06705 PF00391 PEP-utilising enzyme, mobile domain UP12_RS06705 PF05524 PEP-utilising enzyme, N-terminal UP12_RS06710 PF11132 Transcriptional regulator protein (SplA) UP12_RS06720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS06720 PF00672 HAMP domain UP12_RS06720 PF02743 Cache domain UP12_RS06725 PF00106 short chain dehydrogenase UP12_RS06730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase UP12_RS06730 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase UP12_RS06735 PF00188 Cysteine-rich secretory protein family UP12_RS06740 PF00905 Penicillin binding protein transpeptidase domain UP12_RS06740 PF03717 Penicillin-binding Protein dimerisation domain UP12_RS06745 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS06745 PF00989 PAS fold UP12_RS06745 PF08447 PAS fold UP12_RS06745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS06750 PF00155 Aminotransferase class I and II UP12_RS06755 PF01545 Cation efflux family UP12_RS06755 PF16916 Dimerisation domain of Zinc Transporter UP12_RS06760 PF06271 RDD family UP12_RS06770 PF01584 CheW-like domain UP12_RS06770 PF00072 Response regulator receiver domain UP12_RS06775 PF14177 YkyB-like protein UP12_RS06790 PF07690 Major Facilitator Superfamily UP12_RS06795 PF01476 LysM domain UP12_RS06795 PF03734 L,D-transpeptidase catalytic domain UP12_RS06800 PF00149 Calcineurin-like phosphoesterase UP12_RS06800 PF10518 TAT (twin-arginine translocation) pathway signal sequence UP12_RS06810 PF10388 EAL-domain associated signalling protein domain UP12_RS06810 PF00563 EAL domain UP12_RS06815 PF05067 Manganese containing catalase UP12_RS06820 PF08796 Protein of unknown function (DUF1797) UP12_RS06825 PF04308 Ribonuclease H-like UP12_RS06830 PF14156 Antirepressor AbbA UP12_RS06840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS06840 PF03466 LysR substrate binding domain UP12_RS06850 PF00258 Flavodoxin UP12_RS06860 PF00258 Flavodoxin UP12_RS06865 PF00132 Bacterial transferase hexapeptide (six repeats) UP12_RS06865 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal UP12_RS06865 PF14602 Hexapeptide repeat of succinyl-transferase UP12_RS06870 PF07687 Peptidase dimerisation domain UP12_RS06870 PF01546 Peptidase family M20/M25/M40 UP12_RS06875 PF03698 Uncharacterised protein family (UPF0180) UP12_RS06880 PF00924 Mechanosensitive ion channel UP12_RS06885 PF10417 C-terminal domain of 1-Cys peroxiredoxin UP12_RS06885 PF00578 AhpC/TSA family UP12_RS06890 PF00578 AhpC/TSA family UP12_RS06905 PF12804 MobA-like NTP transferase domain UP12_RS06910 PF00899 ThiF family UP12_RS06915 PF00994 Probable molybdopterin binding domain UP12_RS06915 PF03454 MoeA C-terminal region (domain IV) UP12_RS06915 PF03453 MoeA N-terminal region (domain I and II) UP12_RS06920 PF03205 Molybdopterin guanine dinucleotide synthesis protein B UP12_RS06925 PF02391 MoaE protein UP12_RS06930 PF02597 ThiS family UP12_RS06945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UP12_RS06950 PF00005 ABC transporter UP12_RS06955 PF12704 MacB-like periplasmic core domain UP12_RS06955 PF02687 FtsX-like permease family UP12_RS06960 PF08220 DeoR-like helix-turn-helix domain UP12_RS06960 PF00455 DeoR C terminal sensor domain UP12_RS06965 PF00294 pfkB family carbohydrate kinase UP12_RS06970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_RS06970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_RS06975 PF10502 Signal peptidase, peptidase S26 UP12_RS06985 PF00005 ABC transporter UP12_RS06985 PF12848 ABC transporter UP12_RS06990 PF02073 Thermophilic metalloprotease (M29) UP12_RS07000 PF18277 AbrB C-terminal domain UP12_RS07000 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin UP12_RS07005 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS07005 PF00989 PAS fold UP12_RS07005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS07010 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like UP12_RS07015 PF02254 TrkA-N domain UP12_RS07015 PF02080 TrkA-C domain UP12_RS07020 PF13382 Adenine deaminase C-terminal domain UP12_RS07020 PF01979 Amidohydrolase family UP12_RS07025 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain UP12_RS07025 PF17770 Ribonuclease J C-terminal domain UP12_RS07025 PF00753 Metallo-beta-lactamase superfamily UP12_RS07030 PF07288 Protein of unknown function (DUF1447) UP12_RS07040 PF01327 Polypeptide deformylase UP12_RS07055 PF00676 Dehydrogenase E1 component UP12_RS07060 PF02779 Transketolase, pyrimidine binding domain UP12_RS07060 PF02780 Transketolase, C-terminal domain UP12_RS07065 PF00364 Biotin-requiring enzyme UP12_RS07065 PF02817 e3 binding domain UP12_RS07065 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UP12_RS07070 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS07070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UP12_RS07085 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain UP12_RS07085 PF01276 Orn/Lys/Arg decarboxylase, major domain UP12_RS07090 PF05256 Uncharacterised protein family (UPF0223) UP12_RS07095 PF06335 Protein of unknown function (DUF1054) UP12_RS07105 PF00459 Inositol monophosphatase family UP12_RS07120 PF04542 Sigma-70 region 2 UP12_RS07120 PF08281 Sigma-70, region 4 UP12_RS07125 PF13490 Putative zinc-finger UP12_RS07140 PF00679 Elongation factor G C-terminus UP12_RS07140 PF14492 Elongation Factor G, domain II UP12_RS07140 PF00009 Elongation factor Tu GTP binding domain UP12_RS07140 PF03144 Elongation factor Tu domain 2 UP12_RS07145 PF14036 YlaH-like protein UP12_RS07150 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) UP12_RS07155 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) UP12_RS07160 PF13638 PIN domain UP12_RS07160 PF02562 PhoH-like protein UP12_RS07170 PF04960 Glutaminase UP12_RS07175 PF07408 Protein of unknown function (DUF1507) UP12_RS07180 PF01098 Cell cycle protein UP12_RS07185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UP12_RS07185 PF00682 HMGL-like UP12_RS07185 PF00289 Biotin carboxylase, N-terminal domain UP12_RS07185 PF00364 Biotin-requiring enzyme UP12_RS07185 PF02785 Biotin carboxylase C-terminal domain UP12_RS07185 PF02436 Conserved carboxylase domain UP12_RS07190 PF03441 FAD binding domain of DNA photolyase UP12_RS07190 PF00875 DNA photolyase UP12_RS07195 PF02628 Cytochrome oxidase assembly protein UP12_RS07200 PF01040 UbiA prenyltransferase family UP12_RS07205 PF00034 Cytochrome c UP12_RS07205 PF02790 Cytochrome C oxidase subunit II, transmembrane domain UP12_RS07205 PF00116 Cytochrome C oxidase subunit II, periplasmic domain UP12_RS07210 PF00115 Cytochrome C and Quinol oxidase polypeptide I UP12_RS07215 PF00510 Cytochrome c oxidase subunit III UP12_RS07220 PF03626 Prokaryotic Cytochrome C oxidase subunit IV UP12_RS07225 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) UP12_RS07230 PF08868 YugN-like family UP12_RS07235 PF00571 CBS domain UP12_RS07240 PF00188 Cysteine-rich secretory protein family UP12_RS07240 PF14504 CAP-associated N-terminal UP12_RS07245 PF14071 Putative coat protein UP12_RS07250 PF14003 YlbE-like protein UP12_RS07260 PF06133 Control of competence regulator ComK, YlbF/YmcA UP12_RS07265 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) UP12_RS07275 PF01467 Cytidylyltransferase-like UP12_RS07280 PF07670 Nucleoside recognition UP12_RS07285 PF01734 Patatin-like phospholipase UP12_RS07290 PF13180 PDZ domain UP12_RS07290 PF05362 Lon protease (S16) C-terminal proteolytic domain UP12_RS07295 PF05636 HIGH Nucleotidyl Transferase UP12_RS07300 PF02620 Large ribosomal RNA subunit accumulation protein YceD UP12_RS07305 PF01783 Ribosomal L32p protein family UP12_RS07315 PF00583 Acetyltransferase (GNAT) family UP12_RS07320 PF02558 Ketopantoate reductase PanE/ApbA UP12_RS07320 PF08546 Ketopantoate reductase PanE/ApbA C terminal UP12_RS07325 PF10079 Bacillithiol biosynthesis BshC UP12_RS07330 PF02381 MraZ protein, putative antitoxin-like UP12_RS07335 PF01795 MraW methylase family UP12_RS07345 PF03717 Penicillin-binding Protein dimerisation domain UP12_RS07345 PF03793 PASTA domain UP12_RS07345 PF00905 Penicillin binding protein transpeptidase domain UP12_RS07350 PF03717 Penicillin-binding Protein dimerisation domain UP12_RS07350 PF00905 Penicillin binding protein transpeptidase domain UP12_RS07350 PF03793 PASTA domain UP12_RS07355 PF01225 Mur ligase family, catalytic domain UP12_RS07355 PF08245 Mur ligase middle domain UP12_RS07355 PF02875 Mur ligase family, glutamate ligase domain UP12_RS07360 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 UP12_RS07360 PF00953 Glycosyl transferase family 4 UP12_RS07365 PF08245 Mur ligase middle domain UP12_RS07365 PF02875 Mur ligase family, glutamate ligase domain UP12_RS07370 PF01098 Cell cycle protein UP12_RS07375 PF04101 Glycosyltransferase family 28 C-terminal domain UP12_RS07375 PF03033 Glycosyltransferase family 28 N-terminal domain UP12_RS07380 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain UP12_RS07380 PF01565 FAD binding domain UP12_RS07385 PF08478 POTRA domain, FtsQ-type UP12_RS07390 PF05949 Bacterial protein of unknown function (DUF881) UP12_RS07395 PF05949 Bacterial protein of unknown function (DUF881) UP12_RS07400 PF06947 Protein of unknown function (DUF1290) UP12_RS07405 PF02491 SHS2 domain inserted in FTSA UP12_RS07410 PF00091 Tubulin/FtsZ family, GTPase domain UP12_RS07410 PF12327 FtsZ family, C-terminal domain UP12_RS07415 PF00082 Subtilase family UP12_RS07415 PF05922 Peptidase inhibitor I9 UP12_RS07420 PF03419 Sporulation factor SpoIIGA UP12_RS07425 PF04545 Sigma-70, region 4 UP12_RS07425 PF04542 Sigma-70 region 2 UP12_RS07430 PF04539 Sigma-70 region 3 UP12_RS07430 PF04545 Sigma-70, region 4 UP12_RS07430 PF04542 Sigma-70 region 2 UP12_RS07435 PF04198 Putative sugar-binding domain UP12_RS07450 PF03608 PTS system enzyme II sorbitol-specific factor UP12_RS07455 PF07663 Sorbitol phosphotransferase enzyme II C-terminus UP12_RS07455 PF03612 Sorbitol phosphotransferase enzyme II N-terminus UP12_RS07460 PF03829 PTS system glucitol/sorbitol-specific IIA component UP12_RS07465 PF00005 ABC transporter UP12_RS07470 PF05239 PRC-barrel domain UP12_RS07475 PF02578 Multi-copper polyphenol oxidoreductase laccase UP12_RS07480 PF01168 Alanine racemase, N-terminal domain UP12_RS07485 PF04472 Cell division protein SepF UP12_RS07490 PF02325 YGGT family UP12_RS07495 PF01479 S4 domain UP12_RS07495 PF17774 Putative RNA-binding domain in YlmH UP12_RS07500 PF05103 DivIVA protein UP12_RS07505 PF08264 Anticodon-binding domain of tRNA UP12_RS07505 PF00133 tRNA synthetases class I (I, L, M and V) UP12_RS07510 PF01258 Prokaryotic dksA/traR C4-type zinc finger UP12_RS07515 PF01252 Signal peptidase (SPase) II UP12_RS07520 PF01479 S4 domain UP12_RS07520 PF00849 RNA pseudouridylate synthase UP12_RS07525 PF00156 Phosphoribosyl transferase domain UP12_RS07530 PF00860 Permease family UP12_RS07535 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain UP12_RS07535 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UP12_RS07540 PF01979 Amidohydrolase family UP12_RS07545 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain UP12_RS07545 PF00117 Glutamine amidotransferase class-I UP12_RS07550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UP12_RS07550 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP12_RS07550 PF02142 MGS-like domain UP12_RS07555 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B UP12_RS07560 PF01180 Dihydroorotate dehydrogenase UP12_RS07565 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family UP12_RS07570 PF00156 Phosphoribosyl transferase domain UP12_RS07575 PF01507 Phosphoadenosine phosphosulfate reductase family UP12_RS07580 PF01384 Phosphate transporter family UP12_RS07585 PF14306 PUA-like domain UP12_RS07585 PF01747 ATP-sulfurylase UP12_RS07595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UP12_RS07600 PF01903 CbiX UP12_RS07610 PF05670 NFACT protein RNA binding domain UP12_RS07615 PF00689 Cation transporting ATPase, C-terminus UP12_RS07615 PF00690 Cation transporter/ATPase, N-terminus UP12_RS07620 PF03755 YicC-like family, N-terminal region UP12_RS07620 PF08340 Domain of unknown function (DUF1732) UP12_RS07625 PF04025 Domain of unknown function (DUF370) UP12_RS07630 PF00625 Guanylate kinase UP12_RS07635 PF01192 RNA polymerase Rpb6 UP12_RS07640 PF02441 Flavoprotein UP12_RS07640 PF04127 DNA / pantothenate metabolism flavoprotein UP12_RS07645 PF17764 3′ DNA-binding domain (3′BD) UP12_RS07645 PF04851 Type III restriction enzyme, res subunit UP12_RS07645 PF18319 PriA DNA helicase Cys-rich region (CRR) domain UP12_RS07645 PF18074 Primosomal protein N C-terminal domain UP12_RS07645 PF00271 Helicase conserved C-terminal domain UP12_RS07650 PF01327 Polypeptide deformylase UP12_RS07655 PF02911 Formyl transferase, C-terminal domain UP12_RS07655 PF00551 Formyl transferase UP12_RS07660 PF01189 16S rRNA methyltransferase RsmB/F UP12_RS07660 PF01029 NusB family UP12_RS07665 PF04055 Radical SAM superfamily UP12_RS07675 PF03793 PASTA domain UP12_RS07675 PF00069 Protein kinase domain UP12_RS07680 PF03193 RsgA GTPase UP12_RS07680 PF16745 RsgA N-terminal domain UP12_RS07685 PF00834 Ribulose-phosphate 3 epimerase family UP12_RS07690 PF04263 Thiamin pyrophosphokinase, catalytic domain UP12_RS07690 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain UP12_RS07695 PF08183 Stage V sporulation protein family UP12_RS07700 PF00830 Ribosomal L28 family UP12_RS07705 PF03780 Asp23 family, cell envelope-related function UP12_RS07710 PF02734 DAK2 domain UP12_RS07710 PF13684 Dihydroxyacetone kinase family UP12_RS07715 PF01842 ACT domain UP12_RS07715 PF03315 Serine dehydratase beta chain UP12_RS07720 PF03313 Serine dehydratase alpha chain UP12_RS07725 PF17191 RecG wedge domain UP12_RS07725 PF00271 Helicase conserved C-terminal domain UP12_RS07725 PF00270 DEAD/DEAH box helicase UP12_RS07735 PF02504 Fatty acid synthesis protein UP12_RS07740 PF00698 Acyl transferase domain UP12_RS07750 PF00550 Phosphopantetheine attachment site UP12_RS07755 PF14622 Ribonuclease-III-like UP12_RS07755 PF00035 Double-stranded RNA binding motif UP12_RS07760 PF02463 RecF/RecN/SMC N terminal domain UP12_RS07760 PF06470 SMC proteins Flexible Hinge Domain UP12_RS07765 PF02881 SRP54-type protein, helical bundle domain UP12_RS07765 PF00448 SRP54-type protein, GTPase domain UP12_RS07770 PF04297 Putative helix-turn-helix protein, YlxM / p13 like UP12_RS07775 PF02881 SRP54-type protein, helical bundle domain UP12_RS07775 PF02978 Signal peptide binding domain UP12_RS07775 PF00448 SRP54-type protein, GTPase domain UP12_RS07780 PF00886 Ribosomal protein S16 UP12_RS07790 PF11068 YlqD protein UP12_RS07795 PF01782 RimM N-terminal domain UP12_RS07795 PF05239 PRC-barrel domain UP12_RS07800 PF01746 tRNA (Guanine-1)-methyltransferase UP12_RS07805 PF01245 Ribosomal protein L19 UP12_RS07810 PF01926 50S ribosome-binding GTPase UP12_RS07815 PF01351 Ribonuclease HII UP12_RS07825 PF01312 FlhB HrpN YscU SpaS Family UP12_RS07830 PF00549 CoA-ligase UP12_RS07830 PF08442 ATP-grasp domain UP12_RS07835 PF02629 CoA binding domain UP12_RS07835 PF00549 CoA-ligase UP12_RS07840 PF02481 DNA recombination-mediator protein A UP12_RS07845 PF01396 Topoisomerase DNA binding C4 zinc finger UP12_RS07845 PF01751 Toprim domain UP12_RS07845 PF01131 DNA topoisomerase UP12_RS07850 PF01134 Glucose inhibited division protein A UP12_RS07855 PF00589 Phage integrase family UP12_RS07855 PF02899 Phage integrase, N-terminal SAM-like domain UP12_RS07860 PF00227 Proteasome subunit UP12_RS07865 PF07724 AAA domain (Cdc48 subfamily) UP12_RS07865 PF00004 ATPase family associated with various cellular activities (AAA) UP12_RS07865 PF10431 C-terminal, D2-small domain, of ClpB protein UP12_RS07870 PF06018 CodY GAF-like domain UP12_RS07870 PF08222 CodY helix-turn-helix domain UP12_RS07875 PF00460 Flagella basal body rod protein UP12_RS07880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UP12_RS07880 PF00460 Flagella basal body rod protein UP12_RS07885 PF02049 Flagellar hook-basal body complex protein FliE UP12_RS07890 PF08345 Flagellar M-ring protein C-terminal UP12_RS07890 PF01514 Secretory protein of YscJ/FliF family UP12_RS07895 PF14842 FliG N-terminal domain UP12_RS07895 PF14841 FliG middle domain UP12_RS07895 PF01706 FliG C-terminal domain UP12_RS07900 PF02108 Flagellar assembly protein FliH UP12_RS07905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UP12_RS07905 PF02874 ATP synthase alpha/beta family, beta-barrel domain UP12_RS07905 PF18269 T3SS EscN ATPase C-terminal domain UP12_RS07910 PF02050 Flagellar FliJ protein UP12_RS07920 PF02120 Flagellar hook-length control protein FliK UP12_RS07925 PF03963 Flagellar hook capping protein - N-terminal region UP12_RS07930 PF00460 Flagella basal body rod protein UP12_RS07930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UP12_RS07935 PF06289 Flagellar and Swarming motility proteins UP12_RS07940 PF03748 Flagellar basal body-associated protein FliL UP12_RS07945 PF02154 Flagellar motor switch protein FliM UP12_RS07945 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term UP12_RS07950 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term UP12_RS07950 PF04509 CheC-like family UP12_RS07955 PF00072 Response regulator receiver domain UP12_RS07960 PF04347 Flagellar biosynthesis protein, FliO UP12_RS07965 PF00813 FliP family UP12_RS07970 PF01313 Bacterial export proteins, family 3 UP12_RS07975 PF01311 Bacterial export proteins, family 1 UP12_RS07980 PF01312 FlhB HrpN YscU SpaS Family UP12_RS07985 PF00771 FHIPEP family UP12_RS07990 PF00448 SRP54-type protein, GTPase domain UP12_RS07995 PF10609 NUBPL iron-transfer P-loop NTPase UP12_RS08000 PF01339 CheB methylesterase UP12_RS08000 PF00072 Response regulator receiver domain UP12_RS08005 PF02895 Signal transducing histidine kinase, homodimeric domain UP12_RS08005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS08005 PF01627 Hpt domain UP12_RS08005 PF01584 CheW-like domain UP12_RS08005 PF07194 P2 response regulator binding domain UP12_RS08010 PF01584 CheW-like domain UP12_RS08015 PF04509 CheC-like family UP12_RS08020 PF03975 CheD chemotactic sensory transduction UP12_RS08025 PF04545 Sigma-70, region 4 UP12_RS08025 PF04542 Sigma-70 region 2 UP12_RS08025 PF04539 Sigma-70 region 3 UP12_RS08035 PF00318 Ribosomal protein S2 UP12_RS08040 PF00889 Elongation factor TS UP12_RS08045 PF00696 Amino acid kinase family UP12_RS08050 PF01765 Ribosome recycling factor UP12_RS08055 PF01255 Putative undecaprenyl diphosphate synthase UP12_RS08065 PF13288 DXP reductoisomerase C-terminal domain UP12_RS08065 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase UP12_RS08065 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain UP12_RS08070 PF17820 PDZ domain UP12_RS08070 PF02163 Peptidase family M50 UP12_RS08075 PF03129 Anticodon binding domain UP12_RS08075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UP12_RS08075 PF04073 Aminoacyl-tRNA editing domain UP12_RS08080 PF14480 DNA polymerase III polC-type N-terminus I UP12_RS08080 PF07733 Bacterial DNA polymerase III alpha NTPase domain UP12_RS08080 PF00929 Exonuclease UP12_RS08080 PF11490 DNA polymerase III polC-type N-terminus II UP12_RS08080 PF02811 PHP domain UP12_RS08080 PF14579 Helix-hairpin-helix motif UP12_RS08080 PF17657 Bacterial DNA polymerase III alpha subunit finger domain UP12_RS08085 PF00942 Cellulose binding domain UP12_RS08085 PF00759 Glycosyl hydrolase family 9 UP12_RS08090 PF00759 Glycosyl hydrolase family 9 UP12_RS08090 PF02011 Glycosyl hydrolase family 48 UP12_RS08090 PF00942 Cellulose binding domain UP12_RS08095 PF12791 Anti-sigma factor N-terminus UP12_RS08095 PF00331 Glycosyl hydrolase family 10 UP12_RS08105 PF17384 RimP C-terminal SH3 domain UP12_RS08105 PF02576 RimP N-terminal domain UP12_RS08110 PF08529 NusA N-terminal domain UP12_RS08110 PF00575 S1 RNA binding domain UP12_RS08110 PF13184 NusA-like KH domain UP12_RS08115 PF04296 Protein of unknown function (DUF448) UP12_RS08120 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family UP12_RS08125 PF04760 Translation initiation factor IF-2, N-terminal region UP12_RS08125 PF11987 Translation-initiation factor 2 UP12_RS08125 PF00009 Elongation factor Tu GTP binding domain UP12_RS08130 PF04456 Protein of unknown function (DUF503) UP12_RS08135 PF02033 Ribosome-binding factor A UP12_RS08140 PF16198 tRNA pseudouridylate synthase B C-terminal domain UP12_RS08140 PF01509 TruB family pseudouridylate synthase (N terminal domain) UP12_RS08145 PF01687 Riboflavin kinase UP12_RS08145 PF06574 FAD synthetase UP12_RS08150 PF00312 Ribosomal protein S15 UP12_RS08155 PF03725 3' exoribonuclease family, domain 2 UP12_RS08155 PF00013 KH domain UP12_RS08155 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain UP12_RS08155 PF01138 3' exoribonuclease family, domain 1 UP12_RS08155 PF00575 S1 RNA binding domain UP12_RS08160 PF01522 Polysaccharide deacetylase UP12_RS08165 PF00675 Insulinase (Peptidase family M16) UP12_RS08165 PF05193 Peptidase M16 inactive domain UP12_RS08175 PF05239 PRC-barrel domain UP12_RS08180 PF16924 Dipicolinate synthase subunit A N-terminal domain UP12_RS08180 PF01262 Alanine dehydrogenase/PNT, C-terminal domain UP12_RS08185 PF02441 Flavoprotein UP12_RS08190 PF02774 Semialdehyde dehydrogenase, dimerisation domain UP12_RS08190 PF01118 Semialdehyde dehydrogenase, NAD binding domain UP12_RS08195 PF13840 ACT domain UP12_RS08195 PF00696 Amino acid kinase family UP12_RS08200 PF00701 Dihydrodipicolinate synthetase family UP12_RS08205 PF00753 Metallo-beta-lactamase superfamily UP12_RS08205 PF17770 Ribonuclease J C-terminal domain UP12_RS08205 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain UP12_RS08210 PF00574 Clp protease UP12_RS08215 PF14035 YlzJ-like protein UP12_RS08220 PF01580 FtsK/SpoIIIE family UP12_RS08220 PF09397 Ftsk gamma domain UP12_RS08220 PF17854 FtsK alpha domain UP12_RS08225 PF00392 Bacterial regulatory proteins, gntR family UP12_RS08225 PF07702 UTRA domain UP12_RS08230 PF07690 Major Facilitator Superfamily UP12_RS08235 PF03176 MMPL family UP12_RS08240 PF05193 Peptidase M16 inactive domain UP12_RS08245 PF05193 Peptidase M16 inactive domain UP12_RS08245 PF00675 Insulinase (Peptidase family M16) UP12_RS08255 PF03176 MMPL family UP12_RS08265 PF11588 Protein of unknown function (DUF3243) UP12_RS08270 PF11868 Protein of unknown function (DUF3388) UP12_RS08275 PF13464 Domain of unknown function (DUF4115) UP12_RS08280 PF01066 CDP-alcohol phosphatidyltransferase UP12_RS08285 PF00994 Probable molybdopterin binding domain UP12_RS08285 PF18146 Damage-inducible protein CinA KH domain UP12_RS08285 PF02464 Competence-damaged protein UP12_RS08290 PF00154 recA bacterial DNA recombination protein UP12_RS08295 PF01966 HD domain UP12_RS08295 PF00013 KH domain UP12_RS08295 PF12072 Domain of unknown function (DUF3552) UP12_RS08300 PF13277 YmdB-like protein UP12_RS08310 PF04232 Stage V sporulation protein S (SpoVS) UP12_RS08315 PF00873 AcrB/AcrD/AcrF family UP12_RS08320 PF00107 Zinc-binding dehydrogenase UP12_RS08320 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS08325 PF00155 Aminotransferase class I and II UP12_RS08335 PF01938 TRAM domain UP12_RS08335 PF04055 Radical SAM superfamily UP12_RS08335 PF00919 Uncharacterized protein family UPF0004 UP12_RS08340 PF06133 Control of competence regulator ComK, YlbF/YmcA UP12_RS08345 PF10628 Outer spore coat protein E (CotE) UP12_RS08350 PF05192 MutS domain III UP12_RS08350 PF05190 MutS family domain IV UP12_RS08350 PF05188 MutS domain II UP12_RS08350 PF01624 MutS domain I UP12_RS08350 PF00488 MutS domain V UP12_RS08355 PF08676 MutL C terminal dimerisation domain UP12_RS08355 PF01119 DNA mismatch repair protein, C-terminal domain UP12_RS08360 PF17735 Biofilm surface layer A UP12_RS08375 PF02559 CarD-like/TRCF domain UP12_RS08380 PF05908 Poly-gamma-glutamate hydrolase UP12_RS08385 PF17874 MalT-like TPR region UP12_RS08385 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS08390 PF00082 Subtilase family UP12_RS08395 PF05908 Poly-gamma-glutamate hydrolase UP12_RS08400 PF02566 OsmC-like protein UP12_RS08405 PF00893 Small Multidrug Resistance protein UP12_RS08410 PF00893 Small Multidrug Resistance protein UP12_RS08425 PF12788 YmaF family UP12_RS08435 PF17209 Hfq protein UP12_RS08450 PF07972 NrdI Flavodoxin like UP12_RS08455 PF08343 Ribonucleotide reductase N-terminal UP12_RS08455 PF00317 Ribonucleotide reductase, all-alpha domain UP12_RS08455 PF02867 Ribonucleotide reductase, barrel domain UP12_RS08460 PF00268 Ribonucleotide reductase, small chain UP12_RS08470 PF05036 Sporulation related domain UP12_RS08470 PF01520 N-acetylmuramoyl-L-alanine amidase UP12_RS08475 PF17866 AAA lid domain UP12_RS08475 PF00004 ATPase family associated with various cellular activities (AAA) UP12_RS08480 PF13167 GTP-binding GTPase N-terminal UP12_RS08480 PF01926 50S ribosome-binding GTPase UP12_RS08480 PF16360 GTP-binding GTPase Middle Region UP12_RS08485 PF06838 Methionine gamma-lyase UP12_RS08490 PF13411 MerR HTH family regulatory protein UP12_RS08495 PF00120 Glutamine synthetase, catalytic domain UP12_RS08495 PF03951 Glutamine synthetase, beta-Grasp domain UP12_RS08505 PF17874 MalT-like TPR region UP12_RS08505 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS08510 PF04740 LXG domain of WXG superfamily UP12_RS08510 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH UP12_RS08520 PF04740 LXG domain of WXG superfamily UP12_RS08540 PF01569 PAP2 superfamily UP12_RS08545 PF08818 Domain of unknown function (DU1801) UP12_RS08555 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS08565 PF06912 Protein of unknown function (DUF1275) UP12_RS08570 PF01068 ATP dependent DNA ligase domain UP12_RS08575 PF02735 Ku70/Ku80 beta-barrel domain UP12_RS08580 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) UP12_RS08590 PF02082 Transcriptional regulator UP12_RS08595 PF05368 NmrA-like family UP12_RS08600 PF02754 Cysteine-rich domain UP12_RS08605 PF13183 4Fe-4S dicluster domain UP12_RS08605 PF02589 LUD domain UP12_RS08605 PF11870 Domain of unknown function (DUF3390) UP12_RS08610 PF02589 LUD domain UP12_RS08630 PF04239 Protein of unknown function (DUF421) UP12_RS08635 PF00440 Bacterial regulatory proteins, tetR family UP12_RS08635 PF16295 Tetracyclin repressor-like, C-terminal domain UP12_RS08640 PF00067 Cytochrome P450 UP12_RS08640 PF00175 Oxidoreductase NAD-binding domain UP12_RS08640 PF00667 FAD binding domain UP12_RS08640 PF00258 Flavodoxin UP12_RS08645 PF00089 Trypsin UP12_RS08650 PF14040 Deoxyribonuclease NucA/NucB UP12_RS08655 PF01740 STAS domain UP12_RS08660 PF16800 IseA DL-endopeptidase inhibitor UP12_RS08670 PF01726 LexA DNA binding domain UP12_RS08670 PF00717 Peptidase S24-like UP12_RS08675 PF01476 LysM domain UP12_RS08680 PF00239 Resolvase, N terminal domain UP12_RS08685 PF05979 Bacterial protein of unknown function (DUF896) UP12_RS08690 PF02779 Transketolase, pyrimidine binding domain UP12_RS08690 PF00456 Transketolase, thiamine diphosphate binding domain UP12_RS08690 PF02780 Transketolase, C-terminal domain UP12_RS08695 PF10747 Sporulation inhibitor of replication protein SirA UP12_RS08700 PF03672 Uncharacterised protein family (UPF0154) UP12_RS08705 PF09388 Spo0E like sporulation regulatory protein UP12_RS08710 PF02683 Cytochrome C biogenesis protein transmembrane region UP12_RS08715 PF07301 Protein of unknown function (DUF1453) UP12_RS08720 PF11084 Protein of unknown function (DUF2621) UP12_RS08730 PF08179 Small acid-soluble spore protein P family UP12_RS08740 PF00330 Aconitase family (aconitate hydratase) UP12_RS08740 PF00694 Aconitase C-terminal domain UP12_RS08745 PF00578 AhpC/TSA family UP12_RS08750 PF08177 Small acid-soluble spore protein N family UP12_RS08760 PF03061 Thioesterase superfamily UP12_RS08770 PF01521 Iron-sulphur cluster biosynthesis UP12_RS08775 PF02660 Glycerol-3-phosphate acyltransferase UP12_RS08780 PF13380 CoA binding domain UP12_RS08790 PF01751 Toprim domain UP12_RS08790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS08790 PF00986 DNA gyrase B subunit, carboxyl terminus UP12_RS08790 PF00204 DNA gyrase B UP12_RS08795 PF03989 DNA gyrase C-terminal domain, beta-propeller UP12_RS08795 PF00521 DNA gyrase/topoisomerase IV, subunit A UP12_RS08805 PF07690 Major Facilitator Superfamily UP12_RS08810 PF12464 Maltose acetyltransferase UP12_RS08810 PF14602 Hexapeptide repeat of succinyl-transferase UP12_RS08815 PF01451 Low molecular weight phosphotyrosine protein phosphatase UP12_RS08820 PF02040 Arsenical pump membrane protein UP12_RS08825 PF01022 Bacterial regulatory protein, arsR family UP12_RS08835 PF01323 DSBA-like thioredoxin domain UP12_RS08840 PF02525 Flavodoxin-like fold UP12_RS08850 PF00440 Bacterial regulatory proteins, tetR family UP12_RS08855 PF02525 Flavodoxin-like fold UP12_RS08860 PF01638 HxlR-like helix-turn-helix UP12_RS08870 PF00291 Pyridoxal-phosphate dependent enzyme UP12_RS08875 PF01042 Endoribonuclease L-PSP UP12_RS08885 PF00440 Bacterial regulatory proteins, tetR family UP12_RS08890 PF01494 FAD binding domain UP12_RS08905 PF12802 MarR family UP12_RS08920 PF08803 Putative mono-oxygenase ydhR UP12_RS08945 PF00934 PE family UP12_RS08945 PF07859 alpha/beta hydrolase fold UP12_RS08950 PF13411 MerR HTH family regulatory protein UP12_RS08960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS08960 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS08965 PF00486 Transcriptional regulatory protein, C terminal UP12_RS08965 PF00072 Response regulator receiver domain UP12_RS08970 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain UP12_RS08970 PF17189 Glycosyl hydrolase family 30 beta sandwich domain UP12_RS08975 PF04616 Glycosyl hydrolases family 43 UP12_RS08975 PF03422 Carbohydrate binding module (family 6) UP12_RS08980 PF00171 Aldehyde dehydrogenase family UP12_RS08985 PF11975 Family 4 glycosyl hydrolase C-terminal domain UP12_RS08985 PF02056 Family 4 glycosyl hydrolase UP12_RS08990 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS08995 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS09000 PF01547 Bacterial extracellular solute-binding protein UP12_RS09005 PF00356 Bacterial regulatory proteins, lacI family UP12_RS09010 PF00834 Ribulose-phosphate 3 epimerase family UP12_RS09025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_RS09035 PF04740 LXG domain of WXG superfamily UP12_RS09035 PF14449 Pre-toxin TG UP12_RS09035 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues UP12_RS09040 PF01047 MarR family UP12_RS09045 PF07690 Major Facilitator Superfamily UP12_RS09050 PF01116 Fructose-bisphosphate aldolase class-II UP12_RS09055 PF02378 Phosphotransferase system, EIIC UP12_RS09055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_RS09055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_RS09060 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_RS09060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_RS09065 PF00294 pfkB family carbohydrate kinase UP12_RS09070 PF01418 Helix-turn-helix domain, rpiR family UP12_RS09070 PF01380 SIS domain UP12_RS09075 PF13091 PLD-like domain UP12_RS09095 PF00171 Aldehyde dehydrogenase family UP12_RS09100 PF00175 Oxidoreductase NAD-binding domain UP12_RS09100 PF00258 Flavodoxin UP12_RS09100 PF00667 FAD binding domain UP12_RS09105 PF01077 Nitrite and sulphite reductase 4Fe-4S domain UP12_RS09105 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain UP12_RS09110 PF16177 Acetyl-coenzyme A synthetase N-terminus UP12_RS09110 PF13193 AMP-binding enzyme C-terminal domain UP12_RS09110 PF00501 AMP-binding enzyme UP12_RS09115 PF01039 Carboxyl transferase domain UP12_RS09120 PF00378 Enoyl-CoA hydratase/isomerase UP12_RS09125 PF00682 HMGL-like UP12_RS09130 PF00364 Biotin-requiring enzyme UP12_RS09135 PF02785 Biotin carboxylase C-terminal domain UP12_RS09135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UP12_RS09135 PF00289 Biotin carboxylase, N-terminal domain UP12_RS09140 PF00501 AMP-binding enzyme UP12_RS09140 PF13193 AMP-binding enzyme C-terminal domain UP12_RS09145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UP12_RS09145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_RS09145 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_RS09150 PF02638 Glycosyl hydrolase-like 10 UP12_RS09155 PF13350 Tyrosine phosphatase family UP12_RS09160 PF00455 DeoR C terminal sensor domain UP12_RS09160 PF08220 DeoR-like helix-turn-helix domain UP12_RS09165 PF14552 Tautomerase enzyme UP12_RS09175 PF13556 PucR C-terminal helix-turn-helix domain UP12_RS09175 PF17853 GGDEF-like domain UP12_RS09175 PF05651 Putative sugar diacid recognition UP12_RS09180 PF01565 FAD binding domain UP12_RS09180 PF02913 FAD linked oxidases, C-terminal domain UP12_RS09185 PF02754 Cysteine-rich domain UP12_RS09185 PF13183 4Fe-4S dicluster domain UP12_RS09190 PF03323 Bacillus/Clostridium GerA spore germination protein UP12_RS09195 PF03845 Spore germination protein UP12_RS09205 PF12728 Helix-turn-helix domain UP12_RS09215 PF09335 SNARE associated Golgi protein UP12_RS09220 PF02602 Uroporphyrinogen-III synthase HemD UP12_RS09230 PF00296 Luciferase-like monooxygenase UP12_RS09250 PF01554 MatE UP12_RS09255 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family UP12_RS09260 PF01095 Pectinesterase UP12_RS09265 PF04239 Protein of unknown function (DUF421) UP12_RS09270 PF00355 Rieske [2Fe-2S] domain UP12_RS09275 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS09275 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain UP12_RS09275 PF01077 Nitrite and sulphite reductase 4Fe-4S domain UP12_RS09275 PF04324 BFD-like [2Fe-2S] binding domain UP12_RS09275 PF18267 Rubredoxin NAD+ reductase C-terminal domain UP12_RS09280 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster UP12_RS09280 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS09285 PF04898 Glutamate synthase central domain UP12_RS09285 PF00310 Glutamine amidotransferases class-II UP12_RS09285 PF01645 Conserved region in glutamate synthase UP12_RS09285 PF01493 GXGXG motif UP12_RS09290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS09290 PF03466 LysR substrate binding domain UP12_RS09295 PF00664 ABC transporter transmembrane region UP12_RS09295 PF00005 ABC transporter UP12_RS09300 PF00005 ABC transporter UP12_RS09300 PF00664 ABC transporter transmembrane region UP12_RS09305 PF06445 GyrI-like small molecule binding domain UP12_RS09305 PF13411 MerR HTH family regulatory protein UP12_RS09310 PF00583 Acetyltransferase (GNAT) family UP12_RS09315 PF13302 Acetyltransferase (GNAT) domain UP12_RS09320 PF00171 Aldehyde dehydrogenase family UP12_RS09325 PF01472 PUA domain UP12_RS09325 PF00696 Amino acid kinase family UP12_RS09330 PF03807 NADP oxidoreductase coenzyme F420-dependent UP12_RS09330 PF14748 Pyrroline-5-carboxylate reductase dimerisation UP12_RS09335 PF00067 Cytochrome P450 UP12_RS09340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain UP12_RS09340 PF01568 Molydopterin dinucleotide binding domain UP12_RS09340 PF00384 Molybdopterin oxidoreductase UP12_RS09345 PF00457 Glycosyl hydrolases family 11 UP12_RS09350 PF00370 FGGY family of carbohydrate kinases, N-terminal domain UP12_RS09350 PF02782 FGGY family of carbohydrate kinases, C-terminal domain UP12_RS09355 PF01261 Xylose isomerase-like TIM barrel UP12_RS09360 PF00480 ROK family UP12_RS09365 PF04616 Glycosyl hydrolases family 43 UP12_RS09365 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain UP12_RS09375 PF01588 Putative tRNA binding domain UP12_RS09385 PF14158 YndJ-like protein UP12_RS09390 PF13761 Domain of unknown function (DUF4166) UP12_RS09400 PF00440 Bacterial regulatory proteins, tetR family UP12_RS09400 PF13305 Tetracyclin repressor-like, C-terminal domain UP12_RS09405 PF00753 Metallo-beta-lactamase superfamily UP12_RS09410 PF06445 GyrI-like small molecule binding domain UP12_RS09415 PF13280 WYL domain UP12_RS09415 PF08279 HTH domain UP12_RS09425 PF01022 Bacterial regulatory protein, arsR family UP12_RS09430 PF00324 Amino acid permease UP12_RS09445 PF03972 MmgE/PrpD family UP12_RS09450 PF00285 Citrate synthase, C-terminal domain UP12_RS09455 PF04238 Protein of unknown function (DUF420) UP12_RS09465 PF06725 3D domain UP12_RS09465 PF01476 LysM domain UP12_RS09470 PF00271 Helicase conserved C-terminal domain UP12_RS09470 PF00570 HRDC domain UP12_RS09470 PF16124 RecQ zinc-binding UP12_RS09470 PF09382 RQC domain UP12_RS09470 PF00270 DEAD/DEAH box helicase UP12_RS09480 PF01258 Prokaryotic dksA/traR C4-type zinc finger UP12_RS09490 PF08000 Bacterial PH domain UP12_RS09500 PF00171 Aldehyde dehydrogenase family UP12_RS09505 PF13243 Squalene-hopene cyclase C-terminal domain UP12_RS09505 PF13249 Squalene-hopene cyclase N-terminal domain UP12_RS09510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain UP12_RS09510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain UP12_RS09515 PF01758 Sodium Bile acid symporter family UP12_RS09520 PF00364 Biotin-requiring enzyme UP12_RS09520 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UP12_RS09520 PF02817 e3 binding domain UP12_RS09525 PF16078 2-oxoglutarate dehydrogenase N-terminus UP12_RS09525 PF16870 2-oxoglutarate dehydrogenase C-terminal UP12_RS09525 PF00676 Dehydrogenase E1 component UP12_RS09525 PF02779 Transketolase, pyrimidine binding domain UP12_RS09530 PF00092 von Willebrand factor type A domain UP12_RS09535 PF07728 AAA domain (dynein-related subfamily) UP12_RS09540 PF13627 Prokaryotic lipoprotein-attachment site UP12_RS09540 PF00080 Copper/zinc superoxide dismutase (SODC) UP12_RS09545 PF01476 LysM domain UP12_RS09545 PF00877 NlpC/P60 family UP12_RS09550 PF10372 Bacterial membrane-spanning protein N-terminus UP12_RS09550 PF02457 DisA bacterial checkpoint controller nucleotide-binding UP12_RS09555 PF01554 MatE UP12_RS09560 PF02585 GlcNAc-PI de-N-acetylase UP12_RS09565 PF08830 Protein of unknown function (DUF1806) UP12_RS09575 PF00892 EamA-like transporter family UP12_RS09590 PF01638 HxlR-like helix-turn-helix UP12_RS09595 PF00881 Nitroreductase family UP12_RS09600 PF11755 Protein of unknown function (DUF3311) UP12_RS09605 PF00474 Sodium:solute symporter family UP12_RS09610 PF17820 PDZ domain UP12_RS09610 PF01471 Putative peptidoglycan binding domain UP12_RS09610 PF03572 Peptidase family S41 UP12_RS09615 PF08241 Methyltransferase domain UP12_RS09625 PF02557 D-alanyl-D-alanine carboxypeptidase UP12_RS09630 PF01048 Phosphorylase superfamily UP12_RS09635 PF14191 YodL-like UP12_RS09640 PF01569 PAP2 superfamily UP12_RS09650 PF06855 YozE SAM-like fold UP12_RS09655 PF14122 YokU-like protein, putative antitoxin UP12_RS09660 PF12544 Lysine-2,3-aminomutase UP12_RS09665 PF02954 Bacterial regulatory protein, Fis family UP12_RS09665 PF13426 PAS domain UP12_RS09665 PF00158 Sigma-54 interaction domain UP12_RS09670 PF00535 Glycosyl transferase family 2 UP12_RS09685 PF12996 DUF based on E. rectale Gene description (DUF3880) UP12_RS09695 PF02719 Polysaccharide biosynthesis protein UP12_RS09700 PF01641 SelR domain UP12_RS09705 PF01625 Peptide methionine sulfoxide reductase UP12_RS09710 PF01047 MarR family UP12_RS09725 PF17431 Uncharacterized YmpT-like UP12_RS09730 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) UP12_RS09735 PF13472 GDSL-like Lipase/Acylhydrolase family UP12_RS09740 PF02630 SCO1/SenC UP12_RS09745 PF02645 Uncharacterised protein, DegV family COG1307 UP12_RS09750 PF10751 Protein of unknown function (DUF2535) UP12_RS09755 PF00291 Pyridoxal-phosphate dependent enzyme UP12_RS09755 PF00585 C-terminal regulatory domain of Threonine dehydratase UP12_RS09760 PF08461 Ribonuclease R winged-helix domain UP12_RS09760 PF00158 Sigma-54 interaction domain UP12_RS09765 PF03006 Haemolysin-III related UP12_RS09775 PF00186 Dihydrofolate reductase UP12_RS09780 PF00303 Thymidylate synthase UP12_RS09785 PF04608 Phosphatidylglycerophosphatase A UP12_RS09790 PF14005 YpjP-like protein UP12_RS09795 PF04445 Putative SAM-dependent methyltransferase UP12_RS09800 PF06491 Disulphide isomerase UP12_RS09805 PF00920 Dehydratase family UP12_RS09810 PF13769 Virulence factor UP12_RS09810 PF08712 Scaffold protein Nfu/NifU N terminal UP12_RS09815 PF01966 HD domain UP12_RS09820 PF00255 Glutathione peroxidase UP12_RS09825 PF01268 Formate--tetrahydrofolate ligase UP12_RS09830 PF04204 Homoserine O-succinyltransferase UP12_RS09835 PF00534 Glycosyl transferases group 1 UP12_RS09835 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase UP12_RS09845 PF00313 'Cold-shock' DNA-binding domain UP12_RS09855 PF10782 Zinc-finger UP12_RS09860 PF13456 Reverse transcriptase-like UP12_RS09865 PF02592 Putative vitamin uptake transporter UP12_RS09870 PF13456 Reverse transcriptase-like UP12_RS09880 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain UP12_RS09880 PF01367 5'-3' exonuclease, C-terminal SAM fold UP12_RS09885 PF10752 Protein of unknown function (DUF2533) UP12_RS09890 PF00350 Dynamin family UP12_RS09895 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family UP12_RS09900 PF02797 Chalcone and stilbene synthases, C-terminal domain UP12_RS09900 PF00195 Chalcone and stilbene synthases, N-terminal domain UP12_RS09905 PF01522 Polysaccharide deacetylase UP12_RS09910 PF00860 Permease family UP12_RS09920 PF02074 Carboxypeptidase Taq (M32) metallopeptidase UP12_RS09925 PF13307 Helicase C-terminal domain UP12_RS09935 PF01170 Putative RNA methylase family UPF0020 UP12_RS09935 PF02926 THUMP domain UP12_RS09945 PF05103 DivIVA protein UP12_RS09950 PF06908 YspA SLOG family UP12_RS09955 PF13482 RNase_H superfamily UP12_RS09960 PF00271 Helicase conserved C-terminal domain UP12_RS09960 PF00270 DEAD/DEAH box helicase UP12_RS09960 PF09369 Domain of unknown function (DUF1998) UP12_RS09965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family UP12_RS09970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UP12_RS09980 PF14179 YppG-like protein UP12_RS09985 PF08807 Bacterial domain of unknown function (DUF1798) UP12_RS10000 PF10720 Protein of unknown function (DUF2515) UP12_RS10005 PF03838 Recombination protein U UP12_RS10010 PF00905 Penicillin binding protein transpeptidase domain UP12_RS10010 PF00912 Transglycosylase UP12_RS10020 PF10576 Iron-sulfur binding domain of endonuclease III UP12_RS10020 PF00633 Helix-hairpin-helix motif UP12_RS10020 PF00730 HhH-GPD superfamily base excision DNA repair protein UP12_RS10025 PF07261 Replication initiation and membrane attachment UP12_RS10030 PF00152 tRNA synthetases class II (D, K and N) UP12_RS10030 PF01336 OB-fold nucleic acid binding domain UP12_RS10035 PF03413 Peptidase propeptide and YPEB domain UP12_RS10035 PF17881 Domain of unknown function (DUF5590) UP12_RS10040 PF00929 Exonuclease UP12_RS10040 PF04851 Type III restriction enzyme, res subunit UP12_RS10040 PF13307 Helicase C-terminal domain UP12_RS10045 PF02261 Aspartate decarboxylase UP12_RS10050 PF02569 Pantoate-beta-alanine ligase UP12_RS10055 PF02548 Ketopantoate hydroxymethyltransferase UP12_RS10060 PF08279 HTH domain UP12_RS10060 PF03099 Biotin/lipoate A/B protein ligase family UP12_RS10060 PF02237 Biotin protein ligase C terminal domain UP12_RS10065 PF12627 Probable RNA and SrmB- binding site of polymerase A UP12_RS10065 PF01743 Poly A polymerase head domain UP12_RS10065 PF13735 tRNA nucleotidyltransferase domain 2 putative UP12_RS10070 PF00534 Glycosyl transferases group 1 UP12_RS10070 PF13439 Glycosyltransferase Family 4 UP12_RS10075 PF02585 GlcNAc-PI de-N-acetylase UP12_RS10080 PF02142 MGS-like domain UP12_RS10085 PF01113 Dihydrodipicolinate reductase, N-terminus UP12_RS10085 PF05173 Dihydrodipicolinate reductase, C-terminus UP12_RS10090 PF03819 MazG nucleotide pyrophosphohydrolase domain UP12_RS10095 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_RS10095 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 UP12_RS10100 PF09577 Sporulation protein YpjB (SpoYpjB) UP12_RS10105 PF07187 Protein of unknown function (DUF1405) UP12_RS10110 PF13442 Cytochrome C oxidase, cbb3-type, subunit III UP12_RS10110 PF00032 Cytochrome b(C-terminal)/b6/petD UP12_RS10115 PF00033 Cytochrome b/b6/petB UP12_RS10120 PF00355 Rieske [2Fe-2S] domain UP12_RS10125 PF10673 Protein of unknown function (DUF2487) UP12_RS10130 PF08864 UPF0302 domain UP12_RS10130 PF08858 IDEAL domain UP12_RS10140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) UP12_RS10145 PF02153 Prephenate dehydrogenase UP12_RS10145 PF01842 ACT domain UP12_RS10150 PF00155 Aminotransferase class I and II UP12_RS10155 PF00290 Tryptophan synthase alpha chain UP12_RS10160 PF00291 Pyridoxal-phosphate dependent enzyme UP12_RS10165 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase UP12_RS10170 PF00218 Indole-3-glycerol phosphate synthase UP12_RS10175 PF02885 Glycosyl transferase family, helical bundle domain UP12_RS10175 PF00591 Glycosyl transferase family, a/b domain UP12_RS10180 PF04715 Anthranilate synthase component I, N terminal region UP12_RS10180 PF00425 chorismate binding enzyme UP12_RS10185 PF07736 Chorismate mutase type I UP12_RS10190 PF01761 3-dehydroquinate synthase UP12_RS10195 PF01264 Chorismate synthase UP12_RS10200 PF01739 CheR methyltransferase, SAM binding domain UP12_RS10200 PF03705 CheR methyltransferase, all-alpha domain UP12_RS10205 PF00334 Nucleoside diphosphate kinase UP12_RS10210 PF00348 Polyprenyl synthetase UP12_RS10215 PF01209 ubiE/COQ5 methyltransferase family UP12_RS10220 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 UP12_RS10225 PF02081 Tryptophan RNA-binding attenuator protein UP12_RS10230 PF01227 GTP cyclohydrolase I UP12_RS10235 PF00216 Bacterial DNA-binding protein UP12_RS10240 PF09547 Stage IV sporulation protein A (spore_IV_A) UP12_RS10250 PF10966 Protein of unknown function (DUF2768) UP12_RS10255 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus UP12_RS10255 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UP12_RS10260 PF01926 50S ribosome-binding GTPase UP12_RS10260 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal UP12_RS10270 PF14045 YIEGIA protein UP12_RS10280 PF01070 FMN-dependent dehydrogenase UP12_RS10285 PF00575 S1 RNA binding domain UP12_RS10290 PF02224 Cytidylate kinase UP12_RS10295 PF17313 Family of unknown function (DUF5359) UP12_RS10300 PF07238 PilZ domain UP12_RS10300 PF12945 Flagellar protein YcgR UP12_RS10305 PF03413 Peptidase propeptide and YPEB domain UP12_RS10305 PF14620 YpeB sporulation UP12_RS10310 PF07486 Cell Wall Hydrolase UP12_RS10310 PF01471 Putative peptidoglycan binding domain UP12_RS10315 PF13367 PrsW family intramembrane metalloprotease UP12_RS10325 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_RS10325 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain UP12_RS10330 PF05389 Negative regulator of genetic competence (MecA) UP12_RS10335 PF00149 Calcineurin-like phosphoesterase UP12_RS10340 PF10864 Protein of unknown function (DUF2663) UP12_RS10345 PF01476 LysM domain UP12_RS10350 PF02517 CPBP intramembrane metalloprotease UP12_RS10355 PF00271 Helicase conserved C-terminal domain UP12_RS10355 PF00270 DEAD/DEAH box helicase UP12_RS10360 PF14493 Helix-turn-helix domain UP12_RS10370 PF12822 ECF transporter, substrate-specific component UP12_RS10375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UP12_RS10375 PF01842 ACT domain UP12_RS10375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UP12_RS10380 PF01471 Putative peptidoglycan binding domain UP12_RS10380 PF01510 N-acetylmuramoyl-L-alanine amidase UP12_RS10380 PF01476 LysM domain UP12_RS10390 PF04542 Sigma-70 region 2 UP12_RS10390 PF08281 Sigma-70, region 4 UP12_RS10395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS10395 PF00672 HAMP domain UP12_RS10395 PF00989 PAS fold UP12_RS10395 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS10395 PF18698 Histidine kinase sensor domain UP12_RS10400 PF00486 Transcriptional regulatory protein, C terminal UP12_RS10400 PF00072 Response regulator receiver domain UP12_RS10405 PF01578 Cytochrome C assembly protein UP12_RS10410 PF05140 ResB-like family UP12_RS10415 PF00578 AhpC/TSA family UP12_RS10420 PF00849 RNA pseudouridylate synthase UP12_RS10420 PF01479 S4 domain UP12_RS10425 PF07670 Nucleoside recognition UP12_RS10430 PF07670 Nucleoside recognition UP12_RS10435 PF00768 D-alanyl-D-alanine carboxypeptidase UP12_RS10435 PF07943 Penicillin-binding protein 5, C-terminal domain UP12_RS10440 PF13047 Protein of unknown function (DUF3907) UP12_RS10445 PF04079 Segregation and condensation complex subunit ScpB UP12_RS10450 PF02616 Segregation and condensation protein ScpA UP12_RS10455 PF03745 Domain of unknown function (DUF309) UP12_RS10460 PF00583 Acetyltransferase (GNAT) family UP12_RS10465 PF00885 6,7-dimethyl-8-ribityllumazine synthase UP12_RS10470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase UP12_RS10470 PF00925 GTP cyclohydrolase II UP12_RS10475 PF00677 Lumazine binding domain UP12_RS10495 PF07690 Major Facilitator Superfamily UP12_RS10500 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD UP12_RS10505 PF06207 Protein of unknown function (DUF1002) UP12_RS10510 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain UP12_RS10510 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain UP12_RS10515 PF03323 Bacillus/Clostridium GerA spore germination protein UP12_RS10520 PF14097 Stage V sporulation protein AE1 UP12_RS10525 PF03862 SpoVAC/SpoVAEB sporulation membrane protein UP12_RS10530 PF07451 Stage V sporulation protein AD (SpoVAD) UP12_RS10535 PF03862 SpoVAC/SpoVAEB sporulation membrane protein UP12_RS10540 PF13782 Stage V sporulation protein AB UP12_RS10545 PF12164 Stage V sporulation protein AA UP12_RS10550 PF04545 Sigma-70, region 4 UP12_RS10550 PF04539 Sigma-70 region 3 UP12_RS10550 PF04542 Sigma-70 region 2 UP12_RS10555 PF13581 Histidine kinase-like ATPase domain UP12_RS10560 PF01740 STAS domain UP12_RS10565 PF07943 Penicillin-binding protein 5, C-terminal domain UP12_RS10565 PF00768 D-alanyl-D-alanine carboxypeptidase UP12_RS10570 PF01048 Phosphorylase superfamily UP12_RS10575 PF01676 Metalloenzyme superfamily UP12_RS10580 PF02899 Phage integrase, N-terminal SAM-like domain UP12_RS10580 PF00589 Phage integrase family UP12_RS10585 PF14004 Protein of unknown function (DUF4227) UP12_RS10590 PF01475 Ferric uptake regulator family UP12_RS10595 PF01944 Stage II sporulation protein M UP12_RS10600 PF00082 Subtilase family UP12_RS10600 PF05922 Peptidase inhibitor I9 UP12_RS10610 PF13673 Acetyltransferase (GNAT) domain UP12_RS10620 PF00293 NUDIX domain UP12_RS10625 PF00248 Aldo/keto reductase family UP12_RS10630 PF01638 HxlR-like helix-turn-helix UP12_RS10635 PF02525 Flavodoxin-like fold UP12_RS10645 PF12146 Serine aminopeptidase, S33 UP12_RS10650 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS10655 PF10827 Protein of unknown function (DUF2552) UP12_RS10660 PF01521 Iron-sulphur cluster biosynthesis UP12_RS10665 PF03330 Lytic transglycolase UP12_RS10670 PF04229 GrpB protein UP12_RS10670 PF13673 Acetyltransferase (GNAT) domain UP12_RS10675 PF00583 Acetyltransferase (GNAT) family UP12_RS10680 PF10787 Uncharacterised protein from bacillus cereus group UP12_RS10685 PF00817 impB/mucB/samB family UP12_RS10685 PF11799 impB/mucB/samB family C-terminal domain UP12_RS10690 PF08863 YolD-like protein UP12_RS10695 PF07690 Major Facilitator Superfamily UP12_RS10700 PF00485 Phosphoribulokinase / Uridine kinase family UP12_RS10705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UP12_RS10705 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS10710 PF00106 short chain dehydrogenase UP12_RS10715 PF00753 Metallo-beta-lactamase superfamily UP12_RS10720 PF14748 Pyrroline-5-carboxylate reductase dimerisation UP12_RS10720 PF03807 NADP oxidoreductase coenzyme F420-dependent UP12_RS10730 PF01546 Peptidase family M20/M25/M40 UP12_RS10735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family UP12_RS10740 PF12146 Serine aminopeptidase, S33 UP12_RS10745 PF12897 Alanine-glyoxylate amino-transferase UP12_RS10750 PF12706 Beta-lactamase superfamily domain UP12_RS10755 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain UP12_RS10755 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain UP12_RS10760 PF00392 Bacterial regulatory proteins, gntR family UP12_RS10760 PF07702 UTRA domain UP12_RS10765 PF00232 Glycosyl hydrolase family 1 UP12_RS10770 PF02378 Phosphotransferase system, EIIC UP12_RS10775 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit UP12_RS10780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_RS10790 PF06800 Sugar transport protein UP12_RS10795 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase UP12_RS10795 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain UP12_RS10800 PF11799 impB/mucB/samB family C-terminal domain UP12_RS10800 PF00817 impB/mucB/samB family UP12_RS10800 PF11798 IMS family HHH motif UP12_RS10805 PF00795 Carbon-nitrogen hydrolase UP12_RS10815 PF02096 60Kd inner membrane protein UP12_RS10825 PF07687 Peptidase dimerisation domain UP12_RS10825 PF01546 Peptidase family M20/M25/M40 UP12_RS10830 PF01039 Carboxyl transferase domain UP12_RS10840 PF03734 L,D-transpeptidase catalytic domain UP12_RS10845 PF11728 Putative aromatic acid exporter C-terminal domain UP12_RS10845 PF06081 Aromatic acid exporter family member 1 UP12_RS10850 PF00005 ABC transporter UP12_RS10855 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS10860 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_RS10865 PF06491 Disulphide isomerase UP12_RS10870 PF00781 Diacylglycerol kinase catalytic domain UP12_RS10880 PF00364 Biotin-requiring enzyme UP12_RS10880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UP12_RS10880 PF02817 e3 binding domain UP12_RS10885 PF02780 Transketolase, C-terminal domain UP12_RS10885 PF02779 Transketolase, pyrimidine binding domain UP12_RS10890 PF00676 Dehydrogenase E1 component UP12_RS10895 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS10895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UP12_RS10900 PF00871 Acetokinase family UP12_RS10905 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain UP12_RS10905 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_RS10910 PF01515 Phosphate acetyl/butaryl transferase UP12_RS10915 PF00989 PAS fold UP12_RS10915 PF00158 Sigma-54 interaction domain UP12_RS10915 PF02954 Bacterial regulatory protein, Fis family UP12_RS10920 PF11118 Protein of unknown function (DUF2627) UP12_RS10925 PF03009 Glycerophosphoryl diester phosphodiesterase family UP12_RS10930 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS10940 PF00072 Response regulator receiver domain UP12_RS10940 PF08769 Sporulation initiation factor Spo0A C terminal UP12_RS10945 PF05580 SpoIVB peptidase S55 UP12_RS10945 PF17820 PDZ domain UP12_RS10950 PF13476 AAA domain UP12_RS10955 PF02863 Arginine repressor, C-terminal domain UP12_RS10955 PF01316 Arginine repressor, DNA binding domain UP12_RS10960 PF01728 FtsJ-like methyltransferase UP12_RS10960 PF01479 S4 domain UP12_RS10965 PF13292 1-deoxy-D-xylulose-5-phosphate synthase UP12_RS10965 PF02780 Transketolase, C-terminal domain UP12_RS10965 PF02779 Transketolase, pyrimidine binding domain UP12_RS10970 PF00348 Polyprenyl synthetase UP12_RS10975 PF02609 Exonuclease VII small subunit UP12_RS10980 PF02601 Exonuclease VII, large subunit UP12_RS10980 PF13742 OB-fold nucleic acid binding domain UP12_RS10985 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain UP12_RS10985 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UP12_RS10990 PF01029 NusB family UP12_RS10995 PF03780 Asp23 family, cell envelope-related function UP12_RS11000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UP12_RS11000 PF00289 Biotin carboxylase, N-terminal domain UP12_RS11000 PF02785 Biotin carboxylase C-terminal domain UP12_RS11005 PF00364 Biotin-requiring enzyme UP12_RS11010 PF12685 SpoIIIAH-like protein UP12_RS11020 PF09581 Stage III sporulation protein AF (Spore_III_AF) UP12_RS11025 PF09546 Stage III sporulation protein AE (spore_III_AE) UP12_RS11030 PF06686 Stage III sporulation protein AC/AD protein family UP12_RS11035 PF06686 Stage III sporulation protein AC/AD protein family UP12_RS11040 PF09548 Stage III sporulation protein AB (spore_III_AB) UP12_RS11050 PF10942 Protein of unknown function (DUF2619) UP12_RS11055 PF08207 Elongation factor P (EF-P) KOW-like domain UP12_RS11055 PF01132 Elongation factor P (EF-P) OB domain UP12_RS11055 PF09285 Elongation factor P, C-terminal UP12_RS11060 PF01321 Creatinase/Prolidase N-terminal domain UP12_RS11060 PF00557 Metallopeptidase family M24 UP12_RS11065 PF01220 Dehydroquinase class II UP12_RS11070 PF11085 Conserved membrane protein YqhR UP12_RS11075 PF07136 Protein of unknown function (DUF1385) UP12_RS11085 PF01734 Patatin-like phospholipase UP12_RS11090 PF02742 Iron dependent repressor, metal binding and dimerisation domain UP12_RS11090 PF01325 Iron dependent repressor, N-terminal DNA binding domain UP12_RS11095 PF03099 Biotin/lipoate A/B protein ligase family UP12_RS11100 PF00581 Rhodanese-like domain UP12_RS11105 PF02347 Glycine cleavage system P-protein UP12_RS11110 PF02347 Glycine cleavage system P-protein UP12_RS11115 PF01571 Aminomethyltransferase folate-binding domain UP12_RS11115 PF08669 Glycine cleavage T-protein C-terminal barrel domain UP12_RS11120 PF00176 SNF2 family N-terminal domain UP12_RS11120 PF00271 Helicase conserved C-terminal domain UP12_RS11125 PF11079 Bacterial protein YqhG of unknown function UP12_RS11130 PF01381 Helix-turn-helix UP12_RS11130 PF08671 Anti-repressor SinI UP12_RS11135 PF12389 Camelysin metallo-endopeptidase UP12_RS11150 PF13028 Protein of unknown function (DUF3889) UP12_RS11155 PF14038 YqzE-like protein UP12_RS11175 PF07963 Prokaryotic N-terminal methylation motif UP12_RS11180 PF07963 Prokaryotic N-terminal methylation motif UP12_RS11185 PF00482 Type II secretion system (T2SS), protein F UP12_RS11190 PF00437 Type II/IV secretion system protein UP12_RS11200 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain UP12_RS11200 PF01740 STAS domain UP12_RS11210 PF03960 ArsC family UP12_RS11215 PF11117 Protein of unknown function (DUF2626) UP12_RS11220 PF00753 Metallo-beta-lactamase superfamily UP12_RS11225 PF01910 Thiamine-binding protein UP12_RS11230 PF07690 Major Facilitator Superfamily UP12_RS11235 PF00246 Zinc carboxypeptidase UP12_RS11240 PF00884 Sulfatase UP12_RS11245 PF00480 ROK family UP12_RS11250 PF06014 Bacterial protein of unknown function (DUF910) UP12_RS11255 PF01694 Rhomboid family UP12_RS11265 PF01812 5-formyltetrahydrofolate cyclo-ligase family UP12_RS11270 PF00471 Ribosomal protein L33 UP12_RS11285 PF00005 ABC transporter UP12_RS11290 PF00005 ABC transporter UP12_RS11295 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS11300 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS11305 PF12849 PBP superfamily domain UP12_RS11310 PF00905 Penicillin binding protein transpeptidase domain UP12_RS11310 PF03717 Penicillin-binding Protein dimerisation domain UP12_RS11315 PF07690 Major Facilitator Superfamily UP12_RS11320 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain UP12_RS11320 PF02777 Iron/manganese superoxide dismutases, C-terminal domain UP12_RS11325 PF04306 Protein of unknown function (DUF456) UP12_RS11330 PF06691 Protein of unknown function (DUF1189) UP12_RS11335 PF13302 Acetyltransferase (GNAT) domain UP12_RS11345 PF04551 GcpE protein UP12_RS11360 PF00480 ROK family UP12_RS11365 PF01475 Ferric uptake regulator family UP12_RS11370 PF00950 ABC 3 transport family UP12_RS11375 PF00005 ABC transporter UP12_RS11380 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 UP12_RS11380 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_RS11385 PF11116 Protein of unknown function (DUF2624) UP12_RS11390 PF01261 Xylose isomerase-like TIM barrel UP12_RS11395 PF00270 DEAD/DEAH box helicase UP12_RS11395 PF00271 Helicase conserved C-terminal domain UP12_RS11405 PF02401 LytB protein UP12_RS11410 PF01784 NIF3 (NGG1p interacting factor 3) UP12_RS11415 PF04816 tRNA (adenine(22)-N(1))-methyltransferase UP12_RS11420 PF13442 Cytochrome C oxidase, cbb3-type, subunit III UP12_RS11425 PF03979 Sigma-70 factor, region 1.1 UP12_RS11425 PF04539 Sigma-70 region 3 UP12_RS11425 PF04542 Sigma-70 region 2 UP12_RS11425 PF04545 Sigma-70, region 4 UP12_RS11425 PF00140 Sigma-70 factor, region 1.2 UP12_RS11430 PF10410 DnaB-helicase binding domain of primase UP12_RS11430 PF08275 DNA primase catalytic core, N-terminal domain UP12_RS11430 PF01807 CHC2 zinc finger UP12_RS11435 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 UP12_RS11440 PF03618 Kinase/pyrophosphorylase UP12_RS11445 PF08279 HTH domain UP12_RS11445 PF00571 CBS domain UP12_RS11450 PF02092 Glycyl-tRNA synthetase beta subunit UP12_RS11455 PF02091 Glycyl-tRNA synthetase alpha subunit UP12_RS11460 PF02565 Recombination protein O C terminal UP12_RS11460 PF11967 Recombination protein O N terminal UP12_RS11465 PF01926 50S ribosome-binding GTPase UP12_RS11465 PF07650 KH domain UP12_RS11470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UP12_RS11475 PF01219 Prokaryotic diacylglycerol kinase UP12_RS11480 PF02130 Uncharacterized protein family UPF0054 UP12_RS11485 PF07698 7TM receptor with intracellular HD hydrolase UP12_RS11485 PF07697 7TM-HD extracellular UP12_RS11485 PF01966 HD domain UP12_RS11490 PF02562 PhoH-like protein UP12_RS11495 PF06898 Putative stage IV sporulation protein YqfD UP12_RS11500 PF07873 YabP family UP12_RS11510 PF12127 SigmaW regulon antibacterial UP12_RS11515 PF01972 Serine dehydrogenase proteinase UP12_RS11515 PF01957 NfeD-like C-terminal, partner-binding UP12_RS11520 PF09424 Yqey-like protein UP12_RS11525 PF01165 Ribosomal protein S21 UP12_RS11530 PF02690 Na+/Pi-cotransporter UP12_RS11535 PF00919 Uncharacterized protein family UPF0004 UP12_RS11535 PF01938 TRAM domain UP12_RS11535 PF04055 Radical SAM superfamily UP12_RS11540 PF04452 RNA methyltransferase UP12_RS11550 PF00226 DnaJ domain UP12_RS11550 PF01556 DnaJ C terminal domain UP12_RS11550 PF00684 DnaJ central domain UP12_RS11555 PF00012 Hsp70 protein UP12_RS11560 PF01025 GrpE UP12_RS11565 PF01628 HrcA protein C terminal domain UP12_RS11570 PF06969 HemN C-terminal domain UP12_RS11570 PF04055 Radical SAM superfamily UP12_RS11575 PF06421 GTP-binding protein LepA C-terminus UP12_RS11575 PF03144 Elongation factor Tu domain 2 UP12_RS11575 PF00009 Elongation factor Tu GTP binding domain UP12_RS11575 PF00679 Elongation factor G C-terminus UP12_RS11580 PF12438 Protein of unknown function (DUF3679) UP12_RS11585 PF07454 Stage II sporulation protein P (SpoIIP) UP12_RS11590 PF03418 Germination protease UP12_RS11595 PF01649 Ribosomal protein S20 UP12_RS11600 PF06144 DNA polymerase III, delta subunit UP12_RS11605 PF13567 Domain of unknown function (DUF4131) UP12_RS11605 PF03772 Competence protein UP12_RS11605 PF00753 Metallo-beta-lactamase superfamily UP12_RS11610 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UP12_RS11620 PF14748 Pyrroline-5-carboxylate reductase dimerisation UP12_RS11620 PF03807 NADP oxidoreductase coenzyme F420-dependent UP12_RS11625 PF13649 Methyltransferase domain UP12_RS11635 PF01966 HD domain UP12_RS11640 PF01467 Cytidylyltransferase-like UP12_RS11645 PF01985 CRS1 / YhbY (CRM) domain UP12_RS11650 PF18317 Shikimate 5'-dehydrogenase C-terminal domain UP12_RS11650 PF01488 Shikimate / quinate 5-dehydrogenase UP12_RS11650 PF08501 Shikimate dehydrogenase substrate binding domain UP12_RS11655 PF01926 50S ribosome-binding GTPase UP12_RS11665 PF08970 Sporulation inhibitor A UP12_RS11670 PF00657 GDSL-like Lipase/Acylhydrolase UP12_RS11675 PF01522 Polysaccharide deacetylase UP12_RS11680 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS11680 PF13176 Tetratricopeptide repeat UP12_RS11685 PF04545 Sigma-70, region 4 UP12_RS11685 PF04542 Sigma-70 region 2 UP12_RS11700 PF00293 NUDIX domain UP12_RS11700 PF13344 Haloacid dehalogenase-like hydrolase UP12_RS11710 PF11738 Protein of unknown function (DUF3298) UP12_RS11710 PF13739 Deacetylase PdaC UP12_RS11710 PF01522 Polysaccharide deacetylase UP12_RS11735 PF00083 Sugar (and other) transporter UP12_RS11740 PF02610 L-arabinose isomerase UP12_RS11740 PF11762 L-arabinose isomerase C-terminal domain UP12_RS11745 PF00596 Class II Aldolase and Adducin N-terminal domain UP12_RS11755 PF00392 Bacterial regulatory proteins, gntR family UP12_RS11765 PF01380 SIS domain UP12_RS11770 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family UP12_RS11775 PF01638 HxlR-like helix-turn-helix UP12_RS11780 PF07859 alpha/beta hydrolase fold UP12_RS11795 PF00905 Penicillin binding protein transpeptidase domain UP12_RS11800 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_RS11800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_RS11800 PF08028 Acyl-CoA dehydrogenase, C-terminal domain UP12_RS11805 PF00005 ABC transporter UP12_RS11810 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_RS11815 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS11820 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS11825 PF05067 Manganese containing catalase UP12_RS11830 PF00107 Zinc-binding dehydrogenase UP12_RS11830 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS11845 PF00465 Iron-containing alcohol dehydrogenase UP12_RS11850 PF01235 Sodium:alanine symporter family UP12_RS11855 PF03466 LysR substrate binding domain UP12_RS11855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS11860 PF08240 Alcohol dehydrogenase GroES-like domain UP12_RS11860 PF00107 Zinc-binding dehydrogenase UP12_RS11865 PF08241 Methyltransferase domain UP12_RS11870 PF14143 YrhC-like protein UP12_RS11875 PF01053 Cys/Met metabolism PLP-dependent enzyme UP12_RS11880 PF00291 Pyridoxal-phosphate dependent enzyme UP12_RS11885 PF01048 Phosphorylase superfamily UP12_RS11890 PF13649 Methyltransferase domain UP12_RS11895 PF10750 Protein of unknown function (DUF2536) UP12_RS11900 PF07423 Domain of unknown function (DUF1510) UP12_RS11905 PF03717 Penicillin-binding Protein dimerisation domain UP12_RS11905 PF00905 Penicillin binding protein transpeptidase domain UP12_RS11910 PF03449 Transcription elongation factor, N-terminal UP12_RS11910 PF01272 Transcription elongation factor, GreA/GreB, C-term UP12_RS11915 PF02368 Bacterial Ig-like domain (group 2) UP12_RS11920 PF00485 Phosphoribulokinase / Uridine kinase family UP12_RS11925 PF01136 Peptidase family U32 UP12_RS11925 PF16325 Peptidase family U32 C-terminal domain UP12_RS11930 PF01136 Peptidase family U32 UP12_RS11935 PF01596 O-methyltransferase UP12_RS11940 PF02618 YceG-like family UP12_RS11945 PF00108 Thiolase, N-terminal domain UP12_RS11945 PF02803 Thiolase, C-terminal domain UP12_RS11950 PF00501 AMP-binding enzyme UP12_RS11950 PF13193 AMP-binding enzyme C-terminal domain UP12_RS11955 PF02632 BioY family UP12_RS11960 PF06949 Protein of unknown function (DUF1292) UP12_RS11965 PF03652 Holliday junction resolvase UP12_RS11970 PF06135 IreB regulatory phosphoprotein UP12_RS11975 PF02272 DHHA1 domain UP12_RS11975 PF01411 tRNA synthetases class II (A) UP12_RS11975 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UP12_RS11980 PF01594 AI-2E family transporter UP12_RS11985 PF00005 ABC transporter UP12_RS11990 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_RS11995 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS12000 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS12010 PF05239 PRC-barrel domain UP12_RS12015 PF14490 Helix-hairpin-helix containing domain UP12_RS12015 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain UP12_RS12015 PF13538 UvrD-like helicase C-terminal domain UP12_RS12020 PF13181 Tetratricopeptide repeat UP12_RS12020 PF07719 Tetratricopeptide repeat UP12_RS12030 PF00266 Aminotransferase class-V UP12_RS12035 PF02082 Transcriptional regulator UP12_RS12040 PF16193 AAA C-terminal domain UP12_RS12040 PF05496 Holliday junction DNA helicase RuvB P-loop domain UP12_RS12040 PF12002 MgsA AAA+ ATPase C terminal UP12_RS12045 PF00899 ThiF family UP12_RS12055 PF02938 GAD domain UP12_RS12055 PF01336 OB-fold nucleic acid binding domain UP12_RS12055 PF00152 tRNA synthetases class II (D, K and N) UP12_RS12060 PF03129 Anticodon binding domain UP12_RS12060 PF13393 Histidyl-tRNA synthetase UP12_RS12065 PF08239 Bacterial SH3 domain UP12_RS12065 PF01520 N-acetylmuramoyl-L-alanine amidase UP12_RS12070 PF02580 D-Tyr-tRNA(Tyr) deacylase UP12_RS12075 PF13291 ACT domain UP12_RS12075 PF04607 Region found in RelA / SpoT proteins UP12_RS12075 PF02824 TGS domain UP12_RS12080 PF00156 Phosphoribosyl transferase domain UP12_RS12085 PF01368 DHH family UP12_RS12085 PF10141 Single-strand DNA-specific exonuclease, C terminal domain UP12_RS12085 PF17768 RecJ OB domain UP12_RS12085 PF02272 DHHA1 domain UP12_RS12090 PF06305 Lipopolysaccharide assembly protein A domain UP12_RS12095 PF02080 TrkA-C domain UP12_RS12100 PF07549 SecD/SecF GG Motif UP12_RS12100 PF02355 Protein export membrane protein UP12_RS12105 PF13797 Post-transcriptional regulator UP12_RS12110 PF14667 Polysaccharide biosynthesis C-terminal domain UP12_RS12110 PF01943 Polysaccharide biosynthesis protein UP12_RS12115 PF04239 Protein of unknown function (DUF421) UP12_RS12120 PF12670 Protein of unknown function (DUF3792) UP12_RS12125 PF02699 Preprotein translocase subunit UP12_RS12130 PF01702 Queuine tRNA-ribosyltransferase UP12_RS12135 PF02547 Queuosine biosynthesis protein UP12_RS12140 PF11146 Protein of unknown function (DUF2905) UP12_RS12145 PF05491 RuvB C-terminal winged helix domain UP12_RS12145 PF05496 Holliday junction DNA helicase RuvB P-loop domain UP12_RS12145 PF17864 RuvB AAA lid domain UP12_RS12150 PF01330 RuvA N terminal domain UP12_RS12150 PF07499 RuvA, C-terminal domain UP12_RS12155 PF08955 BofC C-terminal domain UP12_RS12155 PF08977 Bypass of Forespore C, N terminal UP12_RS12170 PF13667 ThiC-associated domain UP12_RS12170 PF01964 Radical SAM ThiC family UP12_RS12180 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) UP12_RS12185 PF01476 LysM domain UP12_RS12190 PF02445 Quinolinate synthetase A protein UP12_RS12195 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain UP12_RS12195 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain UP12_RS12200 PF00890 FAD binding domain UP12_RS12200 PF02910 Fumarate reductase flavoprotein C-term UP12_RS12205 PF00266 Aminotransferase class-V UP12_RS12210 PF08279 HTH domain UP12_RS12210 PF02829 3H domain UP12_RS12215 PF01842 ACT domain UP12_RS12215 PF00800 Prephenate dehydratase UP12_RS12220 PF01842 ACT domain UP12_RS12225 PF01018 GTP1/OBG UP12_RS12225 PF09269 Domain of unknown function (DUF1967) UP12_RS12225 PF01926 50S ribosome-binding GTPase UP12_RS12230 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain UP12_RS12230 PF14682 Sporulation initiation phospho-transferase B, C-terminal UP12_RS12235 PF01016 Ribosomal L27 protein UP12_RS12240 PF04327 Cysteine protease Prp UP12_RS12245 PF00829 Ribosomal prokaryotic L21 protein UP12_RS12250 PF02163 Peptidase family M50 UP12_RS12255 PF01551 Peptidase family M23 UP12_RS12260 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain UP12_RS12265 PF03775 Septum formation inhibitor MinC, C-terminal domain UP12_RS12270 PF04093 rod shape-determining protein MreD UP12_RS12275 PF04085 rod shape-determining protein MreC UP12_RS12285 PF04002 RadC-like JAB domain UP12_RS12290 PF02545 Maf-like protein UP12_RS12295 PF05036 Sporulation related domain UP12_RS12300 PF01478 Type IV leader peptidase family UP12_RS12300 PF06750 Bacterial Peptidase A24 N-terminal domain UP12_RS12305 PF02875 Mur ligase family, glutamate ligase domain UP12_RS12305 PF08245 Mur ligase middle domain UP12_RS12310 PF10458 Valyl tRNA synthetase tRNA binding arm UP12_RS12310 PF00133 tRNA synthetases class I (I, L, M and V) UP12_RS12310 PF08264 Anticodon-binding domain of tRNA UP12_RS12325 PF01476 LysM domain UP12_RS12330 PF00202 Aminotransferase class-III UP12_RS12335 PF00490 Delta-aminolevulinic acid dehydratase UP12_RS12340 PF02602 Uroporphyrinogen-III synthase HemD UP12_RS12345 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain UP12_RS12345 PF03900 Porphobilinogen deaminase, C-terminal domain UP12_RS12350 PF01578 Cytochrome C assembly protein UP12_RS12355 PF01488 Shikimate / quinate 5-dehydrogenase UP12_RS12355 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain UP12_RS12355 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain UP12_RS12365 PF01926 50S ribosome-binding GTPase UP12_RS12370 PF00004 ATPase family associated with various cellular activities (AAA) UP12_RS12370 PF02190 ATP-dependent protease La (LON) substrate-binding domain UP12_RS12370 PF05362 Lon protease (S16) C-terminal proteolytic domain UP12_RS12375 PF00004 ATPase family associated with various cellular activities (AAA) UP12_RS12375 PF05362 Lon protease (S16) C-terminal proteolytic domain UP12_RS12380 PF07724 AAA domain (Cdc48 subfamily) UP12_RS12380 PF10431 C-terminal, D2-small domain, of ClpB protein UP12_RS12380 PF06689 ClpX C4-type zinc finger UP12_RS12385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UP12_RS12385 PF05698 Bacterial trigger factor protein (TF) C-terminus UP12_RS12385 PF05697 Bacterial trigger factor protein (TF) UP12_RS12395 PF00694 Aconitase C-terminal domain UP12_RS12400 PF00330 Aconitase family (aconitate hydratase) UP12_RS12405 PF00180 Isocitrate/isopropylmalate dehydrogenase UP12_RS12410 PF08502 LeuA allosteric (dimerisation) domain UP12_RS12410 PF00682 HMGL-like UP12_RS12415 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain UP12_RS12415 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain UP12_RS12420 PF10369 Small subunit of acetolactate synthase UP12_RS12420 PF01842 ACT domain UP12_RS12425 PF00205 Thiamine pyrophosphate enzyme, central domain UP12_RS12425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UP12_RS12425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UP12_RS12430 PF01063 Amino-transferase class IV UP12_RS12435 PF10282 Lactonase, 7-bladed beta-propeller UP12_RS12440 PF06803 Protein of unknown function (DUF1232) UP12_RS12445 PF04914 DltD protein UP12_RS12450 PF00550 Phosphopantetheine attachment site UP12_RS12455 PF03062 MBOAT, membrane-bound O-acyltransferase family UP12_RS12460 PF13193 AMP-binding enzyme C-terminal domain UP12_RS12460 PF00501 AMP-binding enzyme UP12_RS12470 PF04740 LXG domain of WXG superfamily UP12_RS12470 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues UP12_RS12470 PF14449 Pre-toxin TG UP12_RS12505 PF12850 Calcineurin-like phosphoesterase superfamily domain UP12_RS12510 PF01725 Ham1 family UP12_RS12515 PF01138 3' exoribonuclease family, domain 1 UP12_RS12515 PF03725 3' exoribonuclease family, domain 2 UP12_RS12520 PF10646 Sporulation and spore germination UP12_RS12525 PF01177 Asp/Glu/Hydantoin racemase UP12_RS12530 PF01047 MarR family UP12_RS12555 PF01520 N-acetylmuramoyl-L-alanine amidase UP12_RS12555 PF05036 Sporulation related domain UP12_RS12560 PF05105 Bacteriophage holin family UP12_RS12580 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase UP12_RS12580 PF01476 LysM domain UP12_RS12590 PF01464 Transglycosylase SLT domain UP12_RS12690 PF00589 Phage integrase family UP12_RS12730 PF01555 DNA methylase UP12_RS12745 PF17356 Phage-like element PBSX protein XtrA UP12_RS12780 PF00196 Bacterial regulatory proteins, luxR family UP12_RS12785 PF03600 Citrate transporter UP12_RS12790 PF03466 LysR substrate binding domain UP12_RS12790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS12795 PF04303 PrpF protein UP12_RS12800 PF03099 Biotin/lipoate A/B protein ligase family UP12_RS12800 PF02237 Biotin protein ligase C terminal domain UP12_RS12805 PF03061 Thioesterase superfamily UP12_RS12810 PF13183 4Fe-4S dicluster domain UP12_RS12810 PF13085 2Fe-2S iron-sulfur cluster binding domain UP12_RS12815 PF00890 FAD binding domain UP12_RS12815 PF02910 Fumarate reductase flavoprotein C-term UP12_RS12820 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit UP12_RS12825 PF10702 Protein of unknown function (DUF2507) UP12_RS12830 PF13840 ACT domain UP12_RS12830 PF01842 ACT domain UP12_RS12830 PF00696 Amino acid kinase family UP12_RS12835 PF08459 UvrC Helix-hairpin-helix N-terminal UP12_RS12835 PF02151 UvrB/uvrC motif UP12_RS12835 PF01541 GIY-YIG catalytic domain UP12_RS12840 PF00085 Thioredoxin UP12_RS12845 PF06964 Alpha-L-arabinofuranosidase C-terminal domain UP12_RS12850 PF00766 Electron transfer flavoprotein FAD-binding domain UP12_RS12850 PF01012 Electron transfer flavoprotein domain UP12_RS12855 PF01012 Electron transfer flavoprotein domain UP12_RS12860 PF00378 Enoyl-CoA hydratase/isomerase UP12_RS12865 PF08359 YsiA-like protein, C-terminal region UP12_RS12865 PF00440 Bacterial regulatory proteins, tetR family UP12_RS12870 PF00501 AMP-binding enzyme UP12_RS12870 PF13193 AMP-binding enzyme C-terminal domain UP12_RS12880 PF03994 Domain of Unknown Function (DUF350) UP12_RS12885 PF00488 MutS domain V UP12_RS12885 PF01713 Smr domain UP12_RS12890 PF14791 DNA polymerase beta thumb UP12_RS12890 PF14716 Helix-hairpin-helix domain UP12_RS12890 PF02811 PHP domain UP12_RS12895 PF02674 Colicin V production protein UP12_RS12900 PF05164 Cell division protein ZapA UP12_RS12905 PF01351 Ribonuclease HII UP12_RS12905 PF11858 Domain of unknown function (DUF3378) UP12_RS12910 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain UP12_RS12910 PF01588 Putative tRNA binding domain UP12_RS12910 PF03484 tRNA synthetase B5 domain UP12_RS12910 PF03147 Ferredoxin-fold anticodon binding domain UP12_RS12910 PF03483 B3/4 domain UP12_RS12915 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain UP12_RS12915 PF01409 tRNA synthetases class II core domain (F) UP12_RS12920 PF08032 RNA 2'-O ribose methyltransferase substrate binding UP12_RS12920 PF00588 SpoU rRNA Methylase family UP12_RS12925 PF14098 Small, acid-soluble spore protein I UP12_RS12930 PF02554 Carbon starvation protein CstA UP12_RS12930 PF13722 5TM C-terminal transporter carbon starvation CstA UP12_RS12935 PF05343 M42 glutamyl aminopeptidase UP12_RS12945 PF06961 Protein of unknown function (DUF1294) UP12_RS12950 PF00453 Ribosomal protein L20 UP12_RS12955 PF01632 Ribosomal protein L35 UP12_RS12960 PF00707 Translation initiation factor IF-3, C-terminal domain UP12_RS12960 PF05198 Translation initiation factor IF-3, N-terminal domain UP12_RS12965 PF04172 LrgB-like family UP12_RS12970 PF03788 LrgA family UP12_RS12975 PF00072 Response regulator receiver domain UP12_RS12975 PF04397 LytTr DNA-binding domain UP12_RS12980 PF07694 5TMR of 5TMR-LYT UP12_RS12980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS12980 PF06580 Histidine kinase UP12_RS12985 PF13419 Haloacid dehalogenase-like hydrolase UP12_RS12990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS12990 PF08447 PAS fold UP12_RS12990 PF13426 PAS domain UP12_RS12995 PF03129 Anticodon binding domain UP12_RS12995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UP12_RS12995 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UP12_RS12995 PF02824 TGS domain UP12_RS13000 PF08812 YtxC-like family UP12_RS13005 PF09335 SNARE associated Golgi protein UP12_RS13010 PF07319 Primosomal protein DnaI N-terminus UP12_RS13010 PF01695 IstB-like ATP binding protein UP12_RS13015 PF07261 Replication initiation and membrane attachment UP12_RS13020 PF03477 ATP cone domain UP12_RS13030 PF02675 S-adenosylmethionine decarboxylase UP12_RS13035 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain UP12_RS13035 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP12_RS13040 PF01121 Dephospho-CoA kinase UP12_RS13045 PF02659 Putative manganese efflux pump UP12_RS13050 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain UP12_RS13050 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain UP12_RS13050 PF06827 Zinc finger found in FPG and IleRS UP12_RS13055 PF00476 DNA polymerase family A UP12_RS13055 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain UP12_RS13055 PF01367 5'-3' exonuclease, C-terminal SAM fold UP12_RS13060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS13060 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS13060 PF00989 PAS fold UP12_RS13060 PF16736 Single Cache-like UP12_RS13065 PF00072 Response regulator receiver domain UP12_RS13065 PF00486 Transcriptional regulatory protein, C terminal UP12_RS13070 PF00056 lactate/malate dehydrogenase, NAD binding domain UP12_RS13070 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain UP12_RS13075 PF00180 Isocitrate/isopropylmalate dehydrogenase UP12_RS13080 PF00285 Citrate synthase, C-terminal domain UP12_RS13085 PF04284 Protein of unknown function (DUF441) UP12_RS13090 PF01594 AI-2E family transporter UP12_RS13095 PF04186 FxsA cytoplasmic membrane protein UP12_RS13100 PF00391 PEP-utilising enzyme, mobile domain UP12_RS13100 PF00224 Pyruvate kinase, barrel domain UP12_RS13100 PF02887 Pyruvate kinase, alpha/beta domain UP12_RS13105 PF00365 Phosphofructokinase UP12_RS13110 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit UP12_RS13115 PF01039 Carboxyl transferase domain UP12_RS13115 PF17848 Acetyl-coA carboxylase zinc finger domain UP12_RS13120 PF00390 Malic enzyme, N-terminal domain UP12_RS13120 PF03949 Malic enzyme, NAD binding domain UP12_RS13125 PF07733 Bacterial DNA polymerase III alpha NTPase domain UP12_RS13125 PF17657 Bacterial DNA polymerase III alpha subunit finger domain UP12_RS13125 PF02811 PHP domain UP12_RS13125 PF14579 Helix-hairpin-helix motif UP12_RS13125 PF01336 OB-fold nucleic acid binding domain UP12_RS13130 PF14034 Sporulation protein YtrH UP12_RS13145 PF02272 DHHA1 domain UP12_RS13145 PF01368 DHH family UP12_RS13150 PF14007 YtpI-like protein UP12_RS13155 PF03061 Thioesterase superfamily UP12_RS13155 PF07085 DRTGG domain UP12_RS13155 PF00392 Bacterial regulatory proteins, gntR family UP12_RS13155 PF00571 CBS domain UP12_RS13175 PF00206 Lyase UP12_RS13175 PF14698 Argininosuccinate lyase C-terminal UP12_RS13180 PF00764 Arginosuccinate synthase UP12_RS13185 PF00994 Probable molybdopterin binding domain UP12_RS13190 PF00871 Acetokinase family UP12_RS13195 PF02384 N-6 DNA Methylase UP12_RS13200 PF08534 Redoxin UP12_RS13205 PF09579 Sporulation protein YtfJ (Spore_YtfJ) UP12_RS13210 PF11167 Protein of unknown function (DUF2953) UP12_RS13215 PF06271 RDD family UP12_RS13220 PF01343 Peptidase family S49 UP12_RS13225 PF01513 ATP-NAD kinase UP12_RS13230 PF00271 Helicase conserved C-terminal domain UP12_RS13230 PF00270 DEAD/DEAH box helicase UP12_RS13230 PF03880 DbpA RNA binding domain UP12_RS13235 PF00487 Fatty acid desaturase UP12_RS13240 PF07730 Histidine kinase UP12_RS13245 PF00072 Response regulator receiver domain UP12_RS13245 PF00196 Bacterial regulatory proteins, luxR family UP12_RS13250 PF01497 Periplasmic binding protein UP12_RS13255 PF00072 Response regulator receiver domain UP12_RS13255 PF00486 Transcriptional regulatory protein, C terminal UP12_RS13260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS13265 PF01098 Cell cycle protein UP12_RS13270 PF03551 Transcriptional regulator PadR-like family UP12_RS13275 PF00005 ABC transporter UP12_RS13280 PF02687 FtsX-like permease family UP12_RS13285 PF01979 Amidohydrolase family UP12_RS13290 PF02525 Flavodoxin-like fold UP12_RS13300 PF01810 LysE type translocator UP12_RS13305 PF00501 AMP-binding enzyme UP12_RS13305 PF13193 AMP-binding enzyme C-terminal domain UP12_RS13310 PF00269 Small, acid-soluble spore proteins, alpha/beta type UP12_RS13315 PF02568 Thiamine biosynthesis protein (ThiI) UP12_RS13315 PF02926 THUMP domain UP12_RS13320 PF00266 Aminotransferase class-V UP12_RS13325 PF05525 Branched-chain amino acid transport protein UP12_RS13330 PF05525 Branched-chain amino acid transport protein UP12_RS13335 PF06160 Septation ring formation regulator, EzrA UP12_RS13340 PF02811 PHP domain UP12_RS13345 PF00440 Bacterial regulatory proteins, tetR family UP12_RS13350 PF13185 GAF domain UP12_RS13355 PF00163 Ribosomal protein S4/S9 N-terminal domain UP12_RS13355 PF01479 S4 domain UP12_RS13365 PF00857 Isochorismatase family UP12_RS13375 PF01674 Lipase (class 2) UP12_RS13380 PF01479 S4 domain UP12_RS13380 PF00579 tRNA synthetases class I (W and Y) UP12_RS13385 PF00501 AMP-binding enzyme UP12_RS13385 PF13193 AMP-binding enzyme C-terminal domain UP12_RS13390 PF00583 Acetyltransferase (GNAT) family UP12_RS13395 PF00571 CBS domain UP12_RS13400 PF00850 Histone deacetylase domain UP12_RS13405 PF00356 Bacterial regulatory proteins, lacI family UP12_RS13410 PF00793 DAHP synthetase I family UP12_RS13410 PF01817 Chorismate mutase type II UP12_RS13415 PF11009 Protein of unknown function (DUF2847) UP12_RS13420 PF12732 YtxH-like protein UP12_RS13425 PF06103 Bacterial protein of unknown function (DUF948) UP12_RS13430 PF08245 Mur ligase middle domain UP12_RS13430 PF02875 Mur ligase family, glutamate ligase domain UP12_RS13430 PF01225 Mur ligase family, catalytic domain UP12_RS13435 PF17854 FtsK alpha domain UP12_RS13435 PF01580 FtsK/SpoIIIE family UP12_RS13435 PF09397 Ftsk gamma domain UP12_RS13440 PF14794 Domain of unknown function (DUF4479) UP12_RS13440 PF01588 Putative tRNA binding domain UP12_RS13445 PF07285 Protein of unknown function (DUF1444) UP12_RS13450 PF00085 Thioredoxin UP12_RS13460 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ UP12_RS13465 PF05343 M42 glutamyl aminopeptidase UP12_RS13470 PF03413 Peptidase propeptide and YPEB domain UP12_RS13475 PF00390 Malic enzyme, N-terminal domain UP12_RS13475 PF03949 Malic enzyme, NAD binding domain UP12_RS13480 PF00753 Metallo-beta-lactamase superfamily UP12_RS13485 PF02390 Putative methyltransferase UP12_RS13490 PF14165 YtzH-like protein UP12_RS13495 PF01636 Phosphotransferase enzyme family UP12_RS13500 PF00781 Diacylglycerol kinase catalytic domain UP12_RS13515 PF00291 Pyridoxal-phosphate dependent enzyme UP12_RS13520 PF03575 Peptidase family S51 UP12_RS13525 PF01546 Peptidase family M20/M25/M40 UP12_RS13530 PF00860 Permease family UP12_RS13535 PF08220 DeoR-like helix-turn-helix domain UP12_RS13540 PF00849 RNA pseudouridylate synthase UP12_RS13540 PF01479 S4 domain UP12_RS13545 PF14667 Polysaccharide biosynthesis C-terminal domain UP12_RS13545 PF01943 Polysaccharide biosynthesis protein UP12_RS13560 PF02028 BCCT, betaine/carnitine/choline family transporter UP12_RS13565 PF03691 Uncharacterised protein family (UPF0167) UP12_RS13570 PF10957 Sporulation protein Cse60 UP12_RS13575 PF00581 Rhodanese-like domain UP12_RS13580 PF04854 Protein of unknown function, DUF624 UP12_RS13585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain UP12_RS13585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UP12_RS13595 PF07470 Glycosyl Hydrolase Family 88 UP12_RS13600 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS13605 PF12833 Helix-turn-helix domain UP12_RS13605 PF17853 GGDEF-like domain UP12_RS13610 PF01638 HxlR-like helix-turn-helix UP12_RS13615 PF07690 Major Facilitator Superfamily UP12_RS13620 PF00248 Aldo/keto reductase family UP12_RS13625 PF13416 Bacterial extracellular solute-binding protein UP12_RS13630 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS13635 PF01370 NAD dependent epimerase/dehydratase family UP12_RS13640 PF01738 Dienelactone hydrolase family UP12_RS13645 PF13603 Leucyl-tRNA synthetase, Domain 2 UP12_RS13645 PF00133 tRNA synthetases class I (I, L, M and V) UP12_RS13645 PF08264 Anticodon-binding domain of tRNA UP12_RS13645 PF09334 tRNA synthetases class I (M) UP12_RS13650 PF14074 Protein of unknown function (DUF4257) UP12_RS13655 PF13426 PAS domain UP12_RS13655 PF01740 STAS domain UP12_RS13660 PF04791 LMBR1-like membrane protein UP12_RS13665 PF12704 MacB-like periplasmic core domain UP12_RS13665 PF02687 FtsX-like permease family UP12_RS13670 PF00005 ABC transporter UP12_RS13680 PF00005 ABC transporter UP12_RS13685 PF00392 Bacterial regulatory proteins, gntR family UP12_RS13695 PF10732 Protein of unknown function (DUF2524) UP12_RS13700 PF16199 Radical_SAM C-terminal domain UP12_RS13700 PF04055 Radical SAM superfamily UP12_RS13705 PF06962 Putative rRNA methylase UP12_RS13710 PF10776 Protein of unknown function (DUF2600) UP12_RS13715 PF12146 Serine aminopeptidase, S33 UP12_RS13720 PF00132 Bacterial transferase hexapeptide (six repeats) UP12_RS13725 PF00733 Asparagine synthase UP12_RS13725 PF13537 Glutamine amidotransferase domain UP12_RS13730 PF02773 S-adenosylmethionine synthetase, C-terminal domain UP12_RS13730 PF02772 S-adenosylmethionine synthetase, central domain UP12_RS13730 PF00438 S-adenosylmethionine synthetase, N-terminal domain UP12_RS13735 PF01293 Phosphoenolpyruvate carboxykinase UP12_RS13740 PF10763 Protein of unknown function (DUF2584) UP12_RS13745 PF00326 Prolyl oligopeptidase family UP12_RS13750 PF01593 Flavin containing amine oxidoreductase UP12_RS13755 PF00535 Glycosyl transferase family 2 UP12_RS13775 PF00005 ABC transporter UP12_RS13780 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS13785 PF00293 NUDIX domain UP12_RS13790 PF02342 TerD domain UP12_RS13805 PF05105 Bacteriophage holin family UP12_RS13815 PF00210 Ferritin-like domain UP12_RS13825 PF13115 YtkA-like UP12_RS13830 PF02664 S-Ribosylhomocysteinase (LuxS) UP12_RS13835 PF01809 Putative membrane protein insertion efficiency factor UP12_RS13840 PF00484 Carbonic anhydrase UP12_RS13845 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment UP12_RS13845 PF01297 Zinc-uptake complex component A periplasmic UP12_RS13850 PF01197 Ribosomal protein L31 UP12_RS13860 PF01654 Cytochrome bd terminal oxidase subunit I UP12_RS13865 PF02322 Cytochrome bd terminal oxidase subunit II UP12_RS13870 PF07561 Domain of Unknown Function (DUF1540) UP12_RS13880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UP12_RS13880 PF13378 Enolase C-terminal domain-like UP12_RS13885 PF13193 AMP-binding enzyme C-terminal domain UP12_RS13885 PF00501 AMP-binding enzyme UP12_RS13890 PF00378 Enoyl-CoA hydratase/isomerase UP12_RS13895 PF00561 alpha/beta hydrolase fold UP12_RS13900 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UP12_RS13900 PF16582 Middle domain of thiamine pyrophosphate UP12_RS13900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UP12_RS13905 PF00425 chorismate binding enzyme UP12_RS13910 PF01040 UbiA prenyltransferase family UP12_RS13915 PF01258 Prokaryotic dksA/traR C4-type zinc finger UP12_RS13920 PF03073 TspO/MBR family UP12_RS14045 PF09515 Thiamine transporter protein (Thia_YuaJ) UP12_RS14055 PF00583 Acetyltransferase (GNAT) family UP12_RS14060 PF06803 Protein of unknown function (DUF1232) UP12_RS14065 PF01098 Cell cycle protein UP12_RS14070 PF01098 Cell cycle protein UP12_RS14075 PF01145 SPFH domain / Band 7 family UP12_RS14075 PF15975 Flotillin UP12_RS14085 PF12867 DinB superfamily UP12_RS14090 PF00465 Iron-containing alcohol dehydrogenase UP12_RS14095 PF00171 Aldehyde dehydrogenase family UP12_RS14105 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS14105 PF13176 Tetratricopeptide repeat UP12_RS14125 PF01510 N-acetylmuramoyl-L-alanine amidase UP12_RS14125 PF01471 Putative peptidoglycan binding domain UP12_RS14130 PF04688 SPP1 phage holin UP12_RS14135 PF10960 BhlA holin family UP12_RS14160 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) UP12_RS14165 PF04865 Baseplate J-like protein UP12_RS14170 PF10934 Protein of unknown function (DUF2634) UP12_RS14175 PF10844 Protein of unknown function (DUF2577) UP12_RS14185 PF01476 LysM domain UP12_RS14190 PF01464 Transglycosylase SLT domain UP12_RS14190 PF01464 Transglycosylase SLT domain UP12_RS14195 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC UP12_RS14205 PF09393 Phage tail tube protein UP12_RS14210 PF17482 Phage tail sheath C-terminal domain UP12_RS14210 PF04984 Phage tail sheath protein subtilisin-like domain UP12_RS14210 PF17481 Phage tail sheath protein beta-sandwich domain UP12_RS14225 PF04883 Bacteriophage HK97-gp10, putative tail-component UP12_RS14230 PF12206 Domain of unknown function (DUF3599) UP12_RS14235 PF11436 Protein of unknown function (DUF3199) UP12_RS14240 PF14553 YqbF, hypothetical protein domain UP12_RS14245 PF05065 Phage capsid family UP12_RS14250 PF14550 Putative phage serine protease XkdF UP12_RS14260 PF04233 Phage Mu protein F like protein UP12_RS14265 PF04860 Phage portal protein UP12_RS14270 PF17288 Terminase RNAseH like domain UP12_RS14270 PF04466 Phage terminase large subunit UP12_RS14400 PF03796 DnaB-like helicase C terminal domain UP12_RS14400 PF00772 DnaB-like helicase N terminal domain UP12_RS14465 PF01381 Helix-turn-helix UP12_RS14475 PF06114 IrrE N-terminal-like domain UP12_RS14480 PF14659 Phage integrase, N-terminal SAM-like domain UP12_RS14480 PF00589 Phage integrase family UP12_RS14495 PF01510 N-acetylmuramoyl-L-alanine amidase UP12_RS14495 PF01471 Putative peptidoglycan binding domain UP12_RS14500 PF04688 SPP1 phage holin UP12_RS14505 PF10960 BhlA holin family UP12_RS14535 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) UP12_RS14540 PF04865 Baseplate J-like protein UP12_RS14545 PF10934 Protein of unknown function (DUF2634) UP12_RS14550 PF10844 Protein of unknown function (DUF2577) UP12_RS14560 PF01476 LysM domain UP12_RS14565 PF01464 Transglycosylase SLT domain UP12_RS14565 PF01464 Transglycosylase SLT domain UP12_RS14570 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC UP12_RS14575 PF09393 Phage tail tube protein UP12_RS14580 PF17482 Phage tail sheath C-terminal domain UP12_RS14580 PF17481 Phage tail sheath protein beta-sandwich domain UP12_RS14580 PF04984 Phage tail sheath protein subtilisin-like domain UP12_RS14595 PF04883 Bacteriophage HK97-gp10, putative tail-component UP12_RS14600 PF12206 Domain of unknown function (DUF3599) UP12_RS14605 PF11436 Protein of unknown function (DUF3199) UP12_RS14610 PF05065 Phage capsid family UP12_RS14615 PF14550 Putative phage serine protease XkdF UP12_RS14620 PF04860 Phage portal protein UP12_RS14625 PF17288 Terminase RNAseH like domain UP12_RS14625 PF04466 Phage terminase large subunit UP12_RS14630 PF10668 Phage terminase small subunit UP12_RS14635 PF08281 Sigma-70, region 4 UP12_RS14640 PF17356 Phage-like element PBSX protein XtrA UP12_RS14645 PF05866 Endodeoxyribonuclease RusA UP12_RS14660 PF01381 Helix-turn-helix UP12_RS14670 PF04055 Radical SAM superfamily UP12_RS14670 PF06968 Biotin and Thiamin Synthesis associated domain UP12_RS14680 PF02673 Bacitracin resistance protein BacA UP12_RS14685 PF01594 AI-2E family transporter UP12_RS14695 PF02894 Oxidoreductase family, C-terminal alpha/beta domain UP12_RS14695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UP12_RS14700 PF01965 DJ-1/PfpI family UP12_RS14705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS14705 PF02743 Cache domain UP12_RS14705 PF00672 HAMP domain UP12_RS14710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS14710 PF00672 HAMP domain UP12_RS14710 PF02743 Cache domain UP12_RS14715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS14715 PF00672 HAMP domain UP12_RS14715 PF02743 Cache domain UP12_RS14720 PF02743 Cache domain UP12_RS14720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS14720 PF00672 HAMP domain UP12_RS14735 PF03060 Nitronate monooxygenase UP12_RS14740 PF01894 Uncharacterised protein family UPF0047 UP12_RS14745 PF00571 CBS domain UP12_RS14745 PF01595 Cyclin M transmembrane N-terminal domain UP12_RS14745 PF03471 Transporter associated domain UP12_RS14750 PF04298 Putative neutral zinc metallopeptidase UP12_RS14760 PF02254 TrkA-N domain UP12_RS14760 PF07885 Ion channel UP12_RS14765 PF08868 YugN-like family UP12_RS14775 PF00342 Phosphoglucose isomerase UP12_RS14780 PF00465 Iron-containing alcohol dehydrogenase UP12_RS14785 PF00465 Iron-containing alcohol dehydrogenase UP12_RS14790 PF04070 Domain of unknown function (DUF378) UP12_RS14795 PF00575 S1 RNA binding domain UP12_RS14800 PF00155 Aminotransferase class I and II UP12_RS14805 PF01037 Lrp/AsnC ligand binding domain UP12_RS14810 PF08386 TAP-like protein UP12_RS14810 PF00561 alpha/beta hydrolase fold UP12_RS14815 PF08958 Domain of unknown function (DUF1871) UP12_RS14820 PF00155 Aminotransferase class I and II UP12_RS14825 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS14825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS14835 PF08810 Kinase associated protein B UP12_RS14840 PF00929 Exonuclease UP12_RS14845 PF07690 Major Facilitator Superfamily UP12_RS14850 PF00905 Penicillin binding protein transpeptidase domain UP12_RS14850 PF00912 Transglycosylase UP12_RS14855 PF04134 Protein of unknown function, DUF393 UP12_RS14860 PF17328 Family of unknown function (DUF5366) UP12_RS14865 PF00989 PAS fold UP12_RS14865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS14865 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain UP12_RS14865 PF17203 Single cache domain 3 UP12_RS14870 PF00072 Response regulator receiver domain UP12_RS14875 PF02608 ABC transporter substrate-binding protein PnrA-like UP12_RS14880 PF00005 ABC transporter UP12_RS14885 PF02653 Branched-chain amino acid transport system / permease component UP12_RS14890 PF02653 Branched-chain amino acid transport system / permease component UP12_RS14895 PF03390 2-hydroxycarboxylate transporter family UP12_RS14905 PF13244 Domain of unknown function (DUF4040) UP12_RS14905 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus UP12_RS14905 PF00361 Proton-conducting membrane transporter UP12_RS14910 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter UP12_RS14915 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L UP12_RS14920 PF00361 Proton-conducting membrane transporter UP12_RS14925 PF01899 Na+/H+ ion antiporter subunit UP12_RS14930 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) UP12_RS14935 PF03334 Na+/H+ antiporter subunit UP12_RS14940 PF03061 Thioesterase superfamily UP12_RS14945 PF00072 Response regulator receiver domain UP12_RS14945 PF00196 Bacterial regulatory proteins, luxR family UP12_RS14950 PF07730 Histidine kinase UP12_RS14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS14955 PF00348 Polyprenyl synthetase UP12_RS14960 PF08181 DegQ (SacQ) family UP12_RS14970 PF08668 HDOD domain UP12_RS14970 PF00563 EAL domain UP12_RS14975 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain UP12_RS14975 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family UP12_RS14975 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain UP12_RS14980 PF00857 Isochorismatase family UP12_RS14985 PF07997 Protein of unknown function (DUF1694) UP12_RS14990 PF14166 YueH-like protein UP12_RS14995 PF10676 Spore germination protein gerPA/gerPF UP12_RS15000 PF10676 Spore germination protein gerPA/gerPF UP12_RS15005 PF01594 AI-2E family transporter UP12_RS15010 PF10842 Protein of unknown function (DUF2642) UP12_RS15020 PF01966 HD domain UP12_RS15025 PF00106 short chain dehydrogenase UP12_RS15030 PF17355 Family of unknown function (DUF5383) UP12_RS15040 PF01580 FtsK/SpoIIIE family UP12_RS15040 PF12538 DNA transporter UP12_RS15045 PF10140 WXG100 protein secretion system (Wss), protein YukC UP12_RS15050 PF08817 WXG100 protein secretion system (Wss), protein YukD UP12_RS15055 PF06013 Proteins of 100 residues with WXG UP12_RS15060 PF13556 PucR C-terminal helix-turn-helix domain UP12_RS15060 PF17853 GGDEF-like domain UP12_RS15060 PF06018 CodY GAF-like domain UP12_RS15065 PF01262 Alanine dehydrogenase/PNT, C-terminal domain UP12_RS15065 PF05222 Alanine dehydrogenase/PNT, N-terminal domain UP12_RS15070 PF02632 BioY family UP12_RS15075 PF07070 SpoOM protein UP12_RS15080 PF03553 Na+/H+ antiporter family UP12_RS15080 PF13726 Na+-H+ antiporter family UP12_RS15085 PF02789 Cytosol aminopeptidase family, N-terminal domain UP12_RS15085 PF00883 Cytosol aminopeptidase family, catalytic domain UP12_RS15090 PF02681 Divergent PAP2 family UP12_RS15095 PF06725 3D domain UP12_RS15100 PF14068 Putative membrane protein UP12_RS15105 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS15110 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS15125 PF01521 Iron-sulphur cluster biosynthesis UP12_RS15130 PF01678 Diaminopimelate epimerase UP12_RS15135 PF07293 Protein of unknown function (DUF1450) UP12_RS15140 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS15150 PF07315 Protein of unknown function (DUF1462) UP12_RS15155 PF01106 NifU-like domain UP12_RS15160 PF07676 WD40-like Beta Propeller Repeat UP12_RS15160 PF00326 Prolyl oligopeptidase family UP12_RS15165 PF08544 GHMP kinases C terminal UP12_RS15165 PF00288 GHMP kinases N terminal domain UP12_RS15170 PF00291 Pyridoxal-phosphate dependent enzyme UP12_RS15175 PF03447 Homoserine dehydrogenase, NAD binding domain UP12_RS15175 PF01842 ACT domain UP12_RS15175 PF00742 Homoserine dehydrogenase UP12_RS15180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UP12_RS15180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UP12_RS15190 PF04608 Phosphatidylglycerophosphatase A UP12_RS15195 PF13344 Haloacid dehalogenase-like hydrolase UP12_RS15200 PF01934 Protein of unknown function DUF86 UP12_RS15205 PF06265 Protein of unknown function (DUF1027) UP12_RS15210 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) UP12_RS15215 PF04055 Radical SAM superfamily UP12_RS15215 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family UP12_RS15225 PF01551 Peptidase family M23 UP12_RS15230 PF09560 Sporulation protein YunB (Spo_YunB) UP12_RS15235 PF08827 Domain of unknown function (DUF1805) UP12_RS15240 PF02872 5'-nucleotidase, C-terminal domain UP12_RS15245 PF01904 Protein of unknown function DUF72 UP12_RS15250 PF17853 GGDEF-like domain UP12_RS15250 PF07905 Purine catabolism regulatory protein-like family UP12_RS15250 PF13556 PucR C-terminal helix-turn-helix domain UP12_RS15255 PF00190 Cupin UP12_RS15260 PF07690 Major Facilitator Superfamily UP12_RS15265 PF00266 Aminotransferase class-V UP12_RS15270 PF04231 Endonuclease I UP12_RS15280 PF01032 FecCD transport family UP12_RS15285 PF01032 FecCD transport family UP12_RS15290 PF01497 Periplasmic binding protein UP12_RS15300 PF07859 alpha/beta hydrolase fold UP12_RS15305 PF06146 Phosphate-starvation-inducible E UP12_RS15310 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS15315 PF00486 Transcriptional regulatory protein, C terminal UP12_RS15315 PF00072 Response regulator receiver domain UP12_RS15320 PF04235 Protein of unknown function (DUF418) UP12_RS15330 PF02525 Flavodoxin-like fold UP12_RS15335 PF02384 N-6 DNA Methylase UP12_RS15335 PF12161 HsdM N-terminal domain UP12_RS15350 PF12008 Type I restriction and modification enzyme - subunit R C terminal UP12_RS15350 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) UP12_RS15350 PF18766 SWI2/SNF2 ATPase UP12_RS15360 PF01458 Uncharacterized protein family (UPF0051) UP12_RS15365 PF01592 NifU-like N terminal domain UP12_RS15370 PF00266 Aminotransferase class-V UP12_RS15375 PF01458 Uncharacterized protein family (UPF0051) UP12_RS15380 PF00005 ABC transporter UP12_RS15385 PF02627 Carboxymuconolactone decarboxylase family UP12_RS15390 PF03180 NLPA lipoprotein UP12_RS15395 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS15400 PF00005 ABC transporter UP12_RS15400 PF09383 NIL domain UP12_RS15405 PF02036 SCP-2 sterol transfer family UP12_RS15410 PF00085 Thioredoxin UP12_RS15415 PF01751 Toprim domain UP12_RS15420 PF10830 Protein of unknown function (DUF2553) UP12_RS15425 PF01597 Glycine cleavage H-protein UP12_RS15430 PF03960 ArsC family UP12_RS15435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UP12_RS15435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_RS15435 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_RS15440 PF00108 Thiolase, N-terminal domain UP12_RS15440 PF02803 Thiolase, C-terminal domain UP12_RS15445 PF00378 Enoyl-CoA hydratase/isomerase UP12_RS15445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UP12_RS15445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UP12_RS15455 PF07875 Coat F domain UP12_RS15460 PF10835 Protein of unknown function (DUF2573) UP12_RS15465 PF00005 ABC transporter UP12_RS15475 PF00106 short chain dehydrogenase UP12_RS15480 PF13180 PDZ domain UP12_RS15485 PF00072 Response regulator receiver domain UP12_RS15485 PF00486 Transcriptional regulatory protein, C terminal UP12_RS15490 PF00672 HAMP domain UP12_RS15490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS15490 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS15495 PF00440 Bacterial regulatory proteins, tetR family UP12_RS15500 PF00206 Lyase UP12_RS15500 PF10415 Fumarase C C-terminus UP12_RS15505 PF03323 Bacillus/Clostridium GerA spore germination protein UP12_RS15510 PF03845 Spore germination protein UP12_RS15515 PF05504 Spore germination B3/ GerAC like, C-terminal UP12_RS15525 PF00072 Response regulator receiver domain UP12_RS15525 PF00196 Bacterial regulatory proteins, luxR family UP12_RS15530 PF07730 Histidine kinase UP12_RS15530 PF00672 HAMP domain UP12_RS15530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS15535 PF09922 Cell wall-active antibiotics response 4TMS YvqF UP12_RS15545 PF04012 PspA/IM30 family UP12_RS15560 PF00005 ABC transporter UP12_RS15565 PF01032 FecCD transport family UP12_RS15570 PF01497 Periplasmic binding protein UP12_RS15575 PF00295 Glycosyl hydrolases family 28 UP12_RS15580 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus UP12_RS15580 PF08666 SAF domain UP12_RS15585 PF01232 Mannitol dehydrogenase Rossmann domain UP12_RS15585 PF08125 Mannitol dehydrogenase C-terminal domain UP12_RS15590 PF00356 Bacterial regulatory proteins, lacI family UP12_RS15595 PF02614 Glucuronate isomerase UP12_RS15600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS15600 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS15605 PF00486 Transcriptional regulatory protein, C terminal UP12_RS15605 PF00072 Response regulator receiver domain UP12_RS15610 PF00005 ABC transporter UP12_RS15615 PF01032 FecCD transport family UP12_RS15620 PF01032 FecCD transport family UP12_RS15625 PF01497 Periplasmic binding protein UP12_RS15630 PF13520 Amino acid permease UP12_RS15635 PF09575 Small spore protein J (Spore_SspJ) UP12_RS15645 PF04307 LexA-binding, inner membrane-associated putative hydrolase UP12_RS15650 PF00884 Sulfatase UP12_RS15660 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS15665 PF00248 Aldo/keto reductase family UP12_RS15670 PF00480 ROK family UP12_RS15675 PF00999 Sodium/hydrogen exchanger family UP12_RS15680 PF03458 UPF0126 domain UP12_RS15685 PF02600 Disulfide bond formation protein DsbB UP12_RS15690 PF13462 Thioredoxin UP12_RS15695 PF00403 Heavy-metal-associated domain UP12_RS15700 PF00005 ABC transporter UP12_RS15705 PF00950 ABC 3 transport family UP12_RS15710 PF01297 Zinc-uptake complex component A periplasmic UP12_RS15720 PF00440 Bacterial regulatory proteins, tetR family UP12_RS15720 PF13977 BetI-type transcriptional repressor, C-terminal UP12_RS15725 PF00072 Response regulator receiver domain UP12_RS15725 PF08664 YcbB domain UP12_RS15730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS15735 PF10415 Fumarase C C-terminus UP12_RS15735 PF00206 Lyase UP12_RS15740 PF00375 Sodium:dicarboxylate symporter family UP12_RS15745 PF00403 Heavy-metal-associated domain UP12_RS15750 PF00403 Heavy-metal-associated domain UP12_RS15755 PF02583 Metal-sensitive transcriptional repressor UP12_RS15765 PF00072 Response regulator receiver domain UP12_RS15765 PF00990 Diguanylate cyclase, GGDEF domain UP12_RS15785 PF01668 SmpB protein UP12_RS15790 PF00575 S1 RNA binding domain UP12_RS15790 PF00773 RNB domain UP12_RS15790 PF08206 Ribonuclease B OB domain UP12_RS15790 PF17876 Cold shock domain UP12_RS15795 PF12146 Serine aminopeptidase, S33 UP12_RS15800 PF03840 Preprotein translocase SecG subunit UP12_RS15805 PF18277 AbrB C-terminal domain UP12_RS15805 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin UP12_RS15810 PF01381 Helix-turn-helix UP12_RS15825 PF01638 HxlR-like helix-turn-helix UP12_RS15830 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS15835 PF04069 Substrate binding domain of ABC-type glycine betaine transport system UP12_RS15840 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS15845 PF00005 ABC transporter UP12_RS15845 PF00571 CBS domain UP12_RS15850 PF12802 MarR family UP12_RS15855 PF01914 MarC family integral membrane protein UP12_RS15865 PF00583 Acetyltransferase (GNAT) family UP12_RS15885 PF00005 ABC transporter UP12_RS15895 PF03952 Enolase, N-terminal domain UP12_RS15895 PF00113 Enolase, C-terminal TIM barrel domain UP12_RS15900 PF01676 Metalloenzyme superfamily UP12_RS15900 PF06415 BPG-independent PGAM N-terminus (iPGM_N) UP12_RS15905 PF00121 Triosephosphate isomerase UP12_RS15910 PF00162 Phosphoglycerate kinase UP12_RS15915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain UP12_RS15915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP12_RS15920 PF04198 Putative sugar-binding domain UP12_RS15925 PF00324 Amino acid permease UP12_RS15930 PF00202 Aminotransferase class-III UP12_RS15935 PF02954 Bacterial regulatory protein, Fis family UP12_RS15935 PF13426 PAS domain UP12_RS15935 PF00158 Sigma-54 interaction domain UP12_RS15940 PF00392 Bacterial regulatory proteins, gntR family UP12_RS15940 PF07729 FCD domain UP12_RS15945 PF04963 Sigma-54 factor, core binding domain UP12_RS15945 PF00309 Sigma-54 factor, Activator interacting domain (AID) UP12_RS15945 PF04552 Sigma-54, DNA binding domain UP12_RS15950 PF09628 YvfG protein UP12_RS15955 PF01554 MatE UP12_RS15960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_RS15960 PF00005 ABC transporter UP12_RS15965 PF00005 ABC transporter UP12_RS15965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_RS15970 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS15975 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS15980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_RS15985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UP12_RS15990 PF00132 Bacterial transferase hexapeptide (six repeats) UP12_RS15990 PF17836 PglD N-terminal domain UP12_RS15995 PF02397 Bacterial sugar transferase UP12_RS16000 PF01943 Polysaccharide biosynthesis protein UP12_RS16000 PF14667 Polysaccharide biosynthesis C-terminal domain UP12_RS16005 PF04230 Polysaccharide pyruvyl transferase UP12_RS16010 PF00535 Glycosyl transferase family 2 UP12_RS16020 PF00534 Glycosyl transferases group 1 UP12_RS16020 PF13439 Glycosyltransferase Family 4 UP12_RS16025 PF00535 Glycosyl transferase family 2 UP12_RS16030 PF13439 Glycosyltransferase Family 4 UP12_RS16030 PF00534 Glycosyl transferases group 1 UP12_RS16035 PF02719 Polysaccharide biosynthesis protein UP12_RS16040 PF13614 AAA domain UP12_RS16045 PF02706 Chain length determinant protein UP12_RS16050 PF01381 Helix-turn-helix UP12_RS16050 PF08671 Anti-repressor SinI UP12_RS16060 PF01497 Periplasmic binding protein UP12_RS16065 PF01032 FecCD transport family UP12_RS16070 PF01032 FecCD transport family UP12_RS16075 PF01522 Polysaccharide deacetylase UP12_RS16075 PF11738 Protein of unknown function (DUF3298) UP12_RS16075 PF13739 Deacetylase PdaC UP12_RS16080 PF00005 ABC transporter UP12_RS16080 PF12848 ABC transporter UP12_RS16085 PF00005 ABC transporter UP12_RS16090 PF00005 ABC transporter UP12_RS16095 PF12911 N-terminal TM domain of oligopeptide transport permease C UP12_RS16095 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS16100 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS16105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_RS16110 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase UP12_RS16135 PF00574 Clp protease UP12_RS16140 PF03641 Possible lysine decarboxylase UP12_RS16145 PF03819 MazG nucleotide pyrophosphohydrolase domain UP12_RS16150 PF00916 Sulfate permease family UP12_RS16150 PF01740 STAS domain UP12_RS16155 PF00484 Carbonic anhydrase UP12_RS16160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UP12_RS16160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UP12_RS16165 PF00545 ribonuclease UP12_RS16170 PF00375 Sodium:dicarboxylate symporter family UP12_RS16175 PF00266 Aminotransferase class-V UP12_RS16185 PF00797 N-acetyltransferase UP12_RS16190 PF00381 PTS HPr component phosphorylation site UP12_RS16195 PF10298 WhiA N-terminal LAGLIDADG-like domain UP12_RS16195 PF14527 WhiA LAGLIDADG-like domain UP12_RS16195 PF02650 WhiA C-terminal HTH domain UP12_RS16200 PF01933 Uncharacterised protein family UPF0052 UP12_RS16205 PF03668 P-loop ATPase protein family UP12_RS16210 PF00293 NUDIX domain UP12_RS16215 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_RS16220 PF00877 NlpC/P60 family UP12_RS16230 PF01502 Phosphoribosyl-AMP cyclohydrolase UP12_RS16230 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase UP12_RS16235 PF00977 Histidine biosynthesis protein UP12_RS16240 PF00977 Histidine biosynthesis protein UP12_RS16245 PF00117 Glutamine amidotransferase class-I UP12_RS16250 PF00475 Imidazoleglycerol-phosphate dehydratase UP12_RS16255 PF00815 Histidinol dehydrogenase UP12_RS16260 PF01634 ATP phosphoribosyltransferase UP12_RS16265 PF13393 Histidyl-tRNA synthetase UP12_RS16270 PF13529 Peptidase_C39 like family UP12_RS16280 PF13460 NAD(P)H-binding UP12_RS16285 PF02082 Transcriptional regulator UP12_RS16290 PF14602 Hexapeptide repeat of succinyl-transferase UP12_RS16295 PF13419 Haloacid dehalogenase-like hydrolase UP12_RS16300 PF07670 Nucleoside recognition UP12_RS16305 PF01790 Prolipoprotein diacylglyceryl transferase UP12_RS16310 PF02603 HPr Serine kinase N terminus UP12_RS16310 PF07475 HPr Serine kinase C-terminal domain UP12_RS16315 PF01979 Amidohydrolase family UP12_RS16320 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase UP12_RS16325 PF07702 UTRA domain UP12_RS16325 PF00392 Bacterial regulatory proteins, gntR family UP12_RS16330 PF00149 Calcineurin-like phosphoesterase UP12_RS16335 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV UP12_RS16340 PF04024 PspC domain UP12_RS16345 PF13349 Putative adhesin UP12_RS16360 PF17755 UvrA DNA-binding domain UP12_RS16360 PF17760 UvrA interaction domain UP12_RS16360 PF00005 ABC transporter UP12_RS16365 PF00271 Helicase conserved C-terminal domain UP12_RS16365 PF17757 UvrB interaction domain UP12_RS16365 PF12344 Ultra-violet resistance protein B UP12_RS16365 PF02151 UvrB/uvrC motif UP12_RS16365 PF04851 Type III restriction enzyme, res subunit UP12_RS16370 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) UP12_RS16380 PF00391 PEP-utilising enzyme, mobile domain UP12_RS16380 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain UP12_RS16385 PF00440 Bacterial regulatory proteins, tetR family UP12_RS16390 PF07690 Major Facilitator Superfamily UP12_RS16400 PF00072 Response regulator receiver domain UP12_RS16400 PF00486 Transcriptional regulatory protein, C terminal UP12_RS16405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS16405 PF00989 PAS fold UP12_RS16405 PF16736 Single Cache-like UP12_RS16405 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS16410 PF00324 Amino acid permease UP12_RS16415 PF00881 Nitroreductase family UP12_RS16420 PF01638 HxlR-like helix-turn-helix UP12_RS16425 PF17820 PDZ domain UP12_RS16430 PF17423 Swarming motility protein UP12_RS16435 PF03572 Peptidase family S41 UP12_RS16435 PF17820 PDZ domain UP12_RS16435 PF01471 Putative peptidoglycan binding domain UP12_RS16440 PF01925 Sulfite exporter TauE/SafE UP12_RS16445 PF00877 NlpC/P60 family UP12_RS16450 PF02687 FtsX-like permease family UP12_RS16450 PF18075 FtsX extracellular domain UP12_RS16455 PF00005 ABC transporter UP12_RS16460 PF13442 Cytochrome C oxidase, cbb3-type, subunit III UP12_RS16465 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 UP12_RS16465 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_RS16480 PF00472 RF-1 domain UP12_RS16480 PF03462 PCRF domain UP12_RS16485 PF02810 SEC-C motif UP12_RS16485 PF01043 SecA preprotein cross-linking domain UP12_RS16485 PF07517 SecA DEAD-like domain UP12_RS16485 PF07516 SecA Wing and Scaffold domain UP12_RS16490 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein UP12_RS16490 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus UP12_RS16495 PF02743 Cache domain UP12_RS16495 PF00672 HAMP domain UP12_RS16495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS16510 PF02561 Flagellar protein FliS UP12_RS16515 PF07196 Flagellin hook IN motif UP12_RS16515 PF02465 Flagellar hook-associated protein 2 N-terminus UP12_RS16515 PF07195 Flagellar hook-associated protein 2 C-terminus UP12_RS16520 PF03646 FlaG protein UP12_RS16525 PF02599 Global regulator protein family UP12_RS16530 PF02623 FliW protein UP12_RS16540 PF00669 Bacterial flagellin N-terminal helical region UP12_RS16540 PF00700 Bacterial flagellin C-terminal helical region UP12_RS16545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UP12_RS16545 PF00460 Flagella basal body rod protein UP12_RS16550 PF05130 FlgN protein UP12_RS16570 PF10719 Late competence development protein ComFB UP12_RS16575 PF00271 Helicase conserved C-terminal domain UP12_RS16575 PF04851 Type III restriction enzyme, res subunit UP12_RS16580 PF02645 Uncharacterised protein, DegV family COG1307 UP12_RS16585 PF00196 Bacterial regulatory proteins, luxR family UP12_RS16585 PF00072 Response regulator receiver domain UP12_RS16590 PF07730 Histidine kinase UP12_RS16590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS16590 PF05384 Sensor protein DegS UP12_RS16595 PF01205 Uncharacterized protein family UPF0029 UP12_RS16595 PF09186 Domain of unknown function (DUF1949) UP12_RS16600 PF03816 Cell envelope-related transcriptional attenuator domain UP12_RS16605 PF00953 Glycosyl transferase family 4 UP12_RS16615 PF00535 Glycosyl transferase family 2 UP12_RS16620 PF02706 Chain length determinant protein UP12_RS16625 PF04932 O-Antigen ligase UP12_RS16630 PF16363 GDP-mannose 4,6 dehydratase UP12_RS16635 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain UP12_RS16635 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UP12_RS16635 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UP12_RS16640 PF13439 Glycosyltransferase Family 4 UP12_RS16640 PF00534 Glycosyl transferases group 1 UP12_RS16645 PF01943 Polysaccharide biosynthesis protein UP12_RS16645 PF14667 Polysaccharide biosynthesis C-terminal domain UP12_RS16650 PF02397 Bacterial sugar transferase UP12_RS16660 PF01520 N-acetylmuramoyl-L-alanine amidase UP12_RS16660 PF04122 Putative cell wall binding repeat 2 UP12_RS16665 PF08486 Stage II sporulation protein UP12_RS16665 PF04122 Putative cell wall binding repeat 2 UP12_RS16675 PF03816 Cell envelope-related transcriptional attenuator domain UP12_RS16680 PF02350 UDP-N-acetylglucosamine 2-epimerase UP12_RS16685 PF00483 Nucleotidyl transferase UP12_RS16690 PF00005 ABC transporter UP12_RS16695 PF01061 ABC-2 type transporter UP12_RS16700 PF00535 Glycosyl transferase family 2 UP12_RS16700 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase UP12_RS16705 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase UP12_RS16715 PF01467 Cytidylyltransferase-like UP12_RS16720 PF03808 Glycosyl transferase WecB/TagA/CpsF family UP12_RS16725 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase UP12_RS16730 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase UP12_RS16730 PF08239 Bacterial SH3 domain UP12_RS16730 PF05036 Sporulation related domain UP12_RS16735 PF01238 Phosphomannose isomerase type I UP12_RS16740 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS16745 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS16750 PF01547 Bacterial extracellular solute-binding protein UP12_RS16755 PF00072 Response regulator receiver domain UP12_RS16755 PF00196 Bacterial regulatory proteins, luxR family UP12_RS16760 PF02743 Cache domain UP12_RS16760 PF06580 Histidine kinase UP12_RS16760 PF00672 HAMP domain UP12_RS16760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS16770 PF00583 Acetyltransferase (GNAT) family UP12_RS16775 PF01081 KDPG and KHG aldolase UP12_RS16780 PF00294 pfkB family carbohydrate kinase UP12_RS16785 PF00356 Bacterial regulatory proteins, lacI family UP12_RS16790 PF04962 KduI/IolB family UP12_RS16800 PF03323 Bacillus/Clostridium GerA spore germination protein UP12_RS16805 PF03845 Spore germination protein UP12_RS16810 PF05504 Spore germination B3/ GerAC like, C-terminal UP12_RS16815 PF00535 Glycosyl transferase family 2 UP12_RS16820 PF00083 Sugar (and other) transporter UP12_RS16825 PF03816 Cell envelope-related transcriptional attenuator domain UP12_RS16835 PF00877 NlpC/P60 family UP12_RS16840 PF09587 Bacterial capsule synthesis protein PGA_cap UP12_RS16845 PF14102 Capsule biosynthesis CapC UP12_RS16850 PF08245 Mur ligase middle domain UP12_RS16855 PF03323 Bacillus/Clostridium GerA spore germination protein UP12_RS16865 PF05504 Spore germination B3/ GerAC like, C-terminal UP12_RS16870 PF00356 Bacterial regulatory proteins, lacI family UP12_RS16875 PF00294 pfkB family carbohydrate kinase UP12_RS16880 PF05025 RbsD / FucU transport protein family UP12_RS16885 PF00005 ABC transporter UP12_RS16890 PF02653 Branched-chain amino acid transport system / permease component UP12_RS16895 PF13407 Periplasmic binding protein domain UP12_RS16900 PF01613 Flavin reductase like domain UP12_RS16905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS16905 PF03466 LysR substrate binding domain UP12_RS16910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UP12_RS16910 PF00205 Thiamine pyrophosphate enzyme, central domain UP12_RS16910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UP12_RS16915 PF03306 Alpha-acetolactate decarboxylase UP12_RS16920 PF01037 Lrp/AsnC ligand binding domain UP12_RS16920 PF13404 AsnC-type helix-turn-helix domain UP12_RS16925 PF02417 Chromate transporter UP12_RS16930 PF02417 Chromate transporter UP12_RS16935 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain UP12_RS16935 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UP12_RS16935 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UP12_RS16940 PF04434 SWIM zinc finger UP12_RS16945 PF00176 SNF2 family N-terminal domain UP12_RS16945 PF12419 SNF2 Helicase protein UP12_RS16945 PF00271 Helicase conserved C-terminal domain UP12_RS16950 PF01740 STAS domain UP12_RS16950 PF13426 PAS domain UP12_RS16965 PF14183 YwpF-like protein UP12_RS16970 PF01741 Large-conductance mechanosensitive channel, MscL UP12_RS16975 PF07977 FabA-like domain UP12_RS16980 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS16985 PF00460 Flagella basal body rod protein UP12_RS16985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UP12_RS16990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UP12_RS16990 PF00460 Flagella basal body rod protein UP12_RS17000 PF12116 Stage III sporulation protein D UP12_RS17005 PF01047 MarR family UP12_RS17010 PF07690 Major Facilitator Superfamily UP12_RS17015 PF01569 PAP2 superfamily UP12_RS17020 PF07690 Major Facilitator Superfamily UP12_RS17025 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_RS17030 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS17035 PF00005 ABC transporter UP12_RS17040 PF00909 Ammonium Transporter Family UP12_RS17045 PF00543 Nitrogen regulatory protein P-II UP12_RS17050 PF01551 Peptidase family M23 UP12_RS17055 PF00583 Acetyltransferase (GNAT) family UP12_RS17070 PF00005 ABC transporter UP12_RS17090 PF00471 Ribosomal protein L33 UP12_RS17095 PF07683 Cobalamin synthesis protein cobW C-terminal domain UP12_RS17095 PF02492 CobW/HypB/UreG, nucleotide-binding domain UP12_RS17100 PF00253 Ribosomal protein S14p/S29e UP12_RS17105 PF06463 Molybdenum Cofactor Synthesis C UP12_RS17105 PF04055 Radical SAM superfamily UP12_RS17110 PF02634 FdhD/NarQ family UP12_RS17115 PF07690 Major Facilitator Superfamily UP12_RS17120 PF00384 Molybdopterin oxidoreductase UP12_RS17125 PF00092 von Willebrand factor type A domain UP12_RS17130 PF00092 von Willebrand factor type A domain UP12_RS17135 PF08486 Stage II sporulation protein UP12_RS17140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) UP12_RS17145 PF08680 TATA-box binding UP12_RS17150 PF06612 Protein of unknown function (DUF1146) UP12_RS17160 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain UP12_RS17160 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain UP12_RS17165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UP12_RS17165 PF02874 ATP synthase alpha/beta family, beta-barrel domain UP12_RS17170 PF00231 ATP synthase UP12_RS17175 PF02874 ATP synthase alpha/beta family, beta-barrel domain UP12_RS17175 PF00306 ATP synthase alpha/beta chain, C terminal domain UP12_RS17175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UP12_RS17180 PF00213 ATP synthase delta (OSCP) subunit UP12_RS17185 PF00430 ATP synthase B/B' CF(0) UP12_RS17190 PF00137 ATP synthase subunit C UP12_RS17195 PF00119 ATP synthase A chain UP12_RS17200 PF03899 ATP synthase I chain UP12_RS17210 PF00464 Serine hydroxymethyltransferase UP12_RS17215 PF04260 Protein of unknown function (DUF436) UP12_RS17220 PF02502 Ribose/Galactose Isomerase UP12_RS17225 PF01451 Low molecular weight phosphotyrosine protein phosphatase UP12_RS17230 PF02659 Putative manganese efflux pump UP12_RS17235 PF03481 Putative GTP-binding controlling metal-binding UP12_RS17235 PF01300 Telomere recombination UP12_RS17245 PF09551 Stage II sporulation protein R (spore_II_R) UP12_RS17255 PF17827 PrmC N-terminal domain UP12_RS17255 PF05175 Methyltransferase small domain UP12_RS17260 PF03462 PCRF domain UP12_RS17260 PF00472 RF-1 domain UP12_RS17265 PF13411 MerR HTH family regulatory protein UP12_RS17270 PF03547 Membrane transport protein UP12_RS17275 PF00390 Malic enzyme, N-terminal domain UP12_RS17275 PF03949 Malic enzyme, NAD binding domain UP12_RS17280 PF00265 Thymidine kinase UP12_RS17285 PF01197 Ribosomal protein L31 UP12_RS17290 PF07497 Rho termination factor, RNA-binding domain UP12_RS17290 PF07498 Rho termination factor, N-terminal domain UP12_RS17290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UP12_RS17295 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded UP12_RS17300 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) UP12_RS17305 PF00923 Transaldolase/Fructose-6-phosphate aldolase UP12_RS17310 PF01116 Fructose-bisphosphate aldolase class-II UP12_RS17315 PF00072 Response regulator receiver domain UP12_RS17320 PF10740 Domain of unknown function (DUF2529) UP12_RS17325 PF06418 CTP synthase N-terminus UP12_RS17325 PF00117 Glutamine amidotransferase class-I UP12_RS17330 PF05066 HB1, ASXL, restriction endonuclease HTH domain UP12_RS17340 PF00005 ABC transporter UP12_RS17365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_RS17365 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_RS17365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UP12_RS17370 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_RS17370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_RS17370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UP12_RS17375 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UP12_RS17375 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UP12_RS17380 PF02803 Thiolase, C-terminal domain UP12_RS17380 PF00108 Thiolase, N-terminal domain UP12_RS17385 PF13183 4Fe-4S dicluster domain UP12_RS17385 PF02754 Cysteine-rich domain UP12_RS17390 PF13091 PLD-like domain UP12_RS17395 PF03851 UV-endonuclease UvdE UP12_RS17405 PF17676 LD-carboxypeptidase C-terminal domain UP12_RS17405 PF02016 LD-carboxypeptidase N-terminal domain UP12_RS17410 PF00664 ABC transporter transmembrane region UP12_RS17410 PF00005 ABC transporter UP12_RS17415 PF13396 Phospholipase_D-nuclease N-terminal UP12_RS17415 PF13091 PLD-like domain UP12_RS17420 PF02016 LD-carboxypeptidase N-terminal domain UP12_RS17420 PF17676 LD-carboxypeptidase C-terminal domain UP12_RS17425 PF00750 tRNA synthetases class I (R) UP12_RS17425 PF03485 Arginyl tRNA synthetase N terminal domain UP12_RS17425 PF05746 DALR anticodon binding domain UP12_RS17430 PF09148 Domain of unknown function (DUF1934) UP12_RS17440 PF00491 Arginase family UP12_RS17445 PF17284 Spermidine synthase tetramerisation domain UP12_RS17450 PF00912 Transglycosylase UP12_RS17450 PF00905 Penicillin binding protein transpeptidase domain UP12_RS17455 PF08741 YwhD family UP12_RS17460 PF02163 Peptidase family M50 UP12_RS17465 PF01361 Tautomerase enzyme UP12_RS17480 PF01966 HD domain UP12_RS17485 PF07293 Protein of unknown function (DUF1450) UP12_RS17500 PF07238 PilZ domain UP12_RS17500 PF00535 Glycosyl transferase family 2 UP12_RS17510 PF03099 Biotin/lipoate A/B protein ligase family UP12_RS17525 PF04740 LXG domain of WXG superfamily UP12_RS17525 PF14449 Pre-toxin TG UP12_RS17555 PF03737 Aldolase/RraA UP12_RS17565 PF01515 Phosphate acetyl/butaryl transferase UP12_RS17570 PF06778 Chlorite dismutase UP12_RS17575 PF07690 Major Facilitator Superfamily UP12_RS17580 PF01037 Lrp/AsnC ligand binding domain UP12_RS17585 PF07690 Major Facilitator Superfamily UP12_RS17595 PF07883 Cupin domain UP12_RS17610 PF00155 Aminotransferase class I and II UP12_RS17620 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase UP12_RS17625 PF04321 RmlD substrate binding domain UP12_RS17630 PF16363 GDP-mannose 4,6 dehydratase UP12_RS17635 PF00483 Nucleotidyl transferase UP12_RS17640 PF04101 Glycosyltransferase family 28 C-terminal domain UP12_RS17645 PF02348 Cytidylyltransferase UP12_RS17650 PF03102 NeuB family UP12_RS17650 PF08666 SAF domain UP12_RS17655 PF00583 Acetyltransferase (GNAT) family UP12_RS17660 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UP12_RS17665 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase UP12_RS17670 PF00535 Glycosyl transferase family 2 UP12_RS17680 PF09671 Spore coat protein (Spore_GerQ) UP12_RS17690 PF04241 Protein of unknown function (DUF423) UP12_RS17695 PF00860 Permease family UP12_RS17700 PF17261 Family of unknown function (DUF5327) UP12_RS17705 PF00171 Aldehyde dehydrogenase family UP12_RS17710 PF03167 Uracil DNA glycosylase superfamily UP12_RS17715 PF00535 Glycosyl transferase family 2 UP12_RS17725 PF08543 Phosphomethylpyrimidine kinase UP12_RS17735 PF08244 Glycosyl hydrolases family 32 C terminal UP12_RS17735 PF00251 Glycosyl hydrolases family 32 N-terminal domain UP12_RS17740 PF02378 Phosphotransferase system, EIIC UP12_RS17740 PF00367 phosphotransferase system, EIIB UP12_RS17745 PF00874 PRD domain UP12_RS17745 PF03123 CAT RNA binding domain UP12_RS17755 PF00082 Subtilase family UP12_RS17755 PF05922 Peptidase inhibitor I9 UP12_RS17755 PF13860 FlgD Ig-like domain UP12_RS17755 PF02225 PA domain UP12_RS17765 PF00296 Luciferase-like monooxygenase UP12_RS17770 PF00881 Nitroreductase family UP12_RS17775 PF01098 Cell cycle protein UP12_RS17780 PF17368 Spore morphogenesis and germination YwcE UP12_RS17785 PF03626 Prokaryotic Cytochrome C oxidase subunit IV UP12_RS17790 PF00510 Cytochrome c oxidase subunit III UP12_RS17795 PF00115 Cytochrome C and Quinol oxidase polypeptide I UP12_RS17800 PF00116 Cytochrome C oxidase subunit II, periplasmic domain UP12_RS17800 PF02790 Cytochrome C oxidase subunit II, transmembrane domain UP12_RS17810 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain UP12_RS17810 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain UP12_RS17815 PF16363 GDP-mannose 4,6 dehydratase UP12_RS17820 PF10509 Galactokinase galactose-binding signature UP12_RS17820 PF08544 GHMP kinases C terminal UP12_RS17820 PF00288 GHMP kinases N terminal domain UP12_RS17835 PF04138 GtrA-like protein UP12_RS17855 PF04341 Protein of unknown function, DUF485 UP12_RS17860 PF00474 Sodium:solute symporter family UP12_RS17875 PF02581 Thiamine monophosphate synthase UP12_RS17880 PF02110 Hydroxyethylthiazole kinase family UP12_RS17885 PF03466 LysR substrate binding domain UP12_RS17885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS17890 PF03788 LrgA family UP12_RS17895 PF04172 LrgB-like family UP12_RS17900 PF10672 S-adenosylmethionine-dependent methyltransferase UP12_RS17900 PF17785 PUA-like domain UP12_RS17905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_RS17910 PF00005 ABC transporter UP12_RS17915 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS17920 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_RS17925 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS17930 PF04607 Region found in RelA / SpoT proteins UP12_RS17935 PF02653 Branched-chain amino acid transport system / permease component UP12_RS17940 PF00005 ABC transporter UP12_RS17945 PF13407 Periplasmic binding protein domain UP12_RS17950 PF13229 Right handed beta helix region UP12_RS17955 PF01063 Amino-transferase class IV UP12_RS17970 PF02056 Family 4 glycosyl hydrolase UP12_RS17970 PF11975 Family 4 glycosyl hydrolase C-terminal domain UP12_RS17975 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit UP12_RS17980 PF02378 Phosphotransferase system, EIIC UP12_RS17985 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_RS17990 PF00874 PRD domain UP12_RS17990 PF05043 Mga helix-turn-helix domain UP12_RS17990 PF08279 HTH domain UP12_RS17990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_RS18005 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain UP12_RS18005 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_RS18020 PF04542 Sigma-70 region 2 UP12_RS18020 PF08281 Sigma-70, region 4 UP12_RS18025 PF00544 Pectate lyase UP12_RS18030 PF00664 ABC transporter transmembrane region UP12_RS18030 PF00005 ABC transporter UP12_RS18035 PF00664 ABC transporter transmembrane region UP12_RS18035 PF00005 ABC transporter UP12_RS18040 PF02322 Cytochrome bd terminal oxidase subunit II UP12_RS18045 PF01654 Cytochrome bd terminal oxidase subunit I UP12_RS18050 PF00005 ABC transporter UP12_RS18055 PF01032 FecCD transport family UP12_RS18065 PF04203 Sortase domain UP12_RS18070 PF00005 ABC transporter UP12_RS18075 PF01032 FecCD transport family UP12_RS18080 PF01497 Periplasmic binding protein UP12_RS18090 PF05031 Iron Transport-associated domain UP12_RS18095 PF05031 Iron Transport-associated domain UP12_RS18100 PF01638 HxlR-like helix-turn-helix UP12_RS18105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_RS18110 PF00925 GTP cyclohydrolase II UP12_RS18110 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase UP12_RS18115 PF01872 RibD C-terminal domain UP12_RS18115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UP12_RS18120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_RS18125 PF01522 Polysaccharide deacetylase UP12_RS18130 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit UP12_RS18135 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_RS18140 PF00232 Glycosyl hydrolase family 1 UP12_RS18145 PF03786 D-mannonate dehydratase (UxuA) UP12_RS18150 PF02378 Phosphotransferase system, EIIC UP12_RS18155 PF05043 Mga helix-turn-helix domain UP12_RS18155 PF00874 PRD domain UP12_RS18155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_RS18155 PF08279 HTH domain UP12_RS18180 PF03553 Na+/H+ antiporter family UP12_RS18185 PF00206 Lyase UP12_RS18185 PF10415 Fumarase C C-terminus UP12_RS18190 PF17763 Glutaminase/Asparaginase C-terminal domain UP12_RS18190 PF00710 Asparaginase, N-terminal UP12_RS18195 PF01381 Helix-turn-helix UP12_RS18205 PF17353 Family of unknown function (DUF5381) UP12_RS18220 PF06013 Proteins of 100 residues with WXG UP12_RS18225 PF01546 Peptidase family M20/M25/M40 UP12_RS18225 PF07687 Peptidase dimerisation domain UP12_RS18240 PF01418 Helix-turn-helix domain, rpiR family UP12_RS18240 PF01380 SIS domain UP12_RS18245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase UP12_RS18245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase UP12_RS18255 PF02447 GntP family permease UP12_RS18260 PF01717 Cobalamin-independent synthase, Catalytic domain UP12_RS18265 PF00232 Glycosyl hydrolase family 1 UP12_RS18270 PF02378 Phosphotransferase system, EIIC UP12_RS18270 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UP12_RS18270 PF00367 phosphotransferase system, EIIB UP12_RS18275 PF00874 PRD domain UP12_RS18275 PF03123 CAT RNA binding domain UP12_RS18280 PF09234 Domain of unknown function (DUF1963) UP12_RS18290 PF02361 Cobalt transport protein UP12_RS18295 PF00005 ABC transporter UP12_RS18300 PF09819 ABC-type cobalt transport system, permease component UP12_RS18305 PF03070 TENA/THI-4/PQQC family UP12_RS18330 PF00801 PKD domain UP12_RS18330 PF05547 Immune inhibitor A peptidase M6 UP12_RS18335 PF03992 Antibiotic biosynthesis monooxygenase UP12_RS18340 PF00881 Nitroreductase family UP12_RS18345 PF01047 MarR family UP12_RS18350 PF02885 Glycosyl transferase family, helical bundle domain UP12_RS18350 PF00591 Glycosyl transferase family, a/b domain UP12_RS18350 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain UP12_RS18355 PF01773 Na+ dependent nucleoside transporter N-terminus UP12_RS18355 PF07662 Na+ dependent nucleoside transporter C-terminus UP12_RS18360 PF01791 DeoC/LacD family aldolase UP12_RS18365 PF04198 Putative sugar-binding domain UP12_RS18385 PF00082 Subtilase family UP12_RS18390 PF01757 Acyltransferase family UP12_RS18395 PF07690 Major Facilitator Superfamily UP12_RS18405 PF08241 Methyltransferase domain UP12_RS18410 PF00196 Bacterial regulatory proteins, luxR family UP12_RS18410 PF00072 Response regulator receiver domain UP12_RS18420 PF13411 MerR HTH family regulatory protein UP12_RS18425 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UP12_RS18430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_RS18435 PF00324 Amino acid permease UP12_RS18440 PF08713 DNA alkylation repair enzyme UP12_RS18445 PF02447 GntP family permease UP12_RS18450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain UP12_RS18450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain UP12_RS18455 PF01380 SIS domain UP12_RS18455 PF01418 Helix-turn-helix domain, rpiR family UP12_RS18460 PF01156 Inosine-uridine preferring nucleoside hydrolase UP12_RS18490 PF03466 LysR substrate binding domain UP12_RS18490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS18495 PF00356 Bacterial regulatory proteins, lacI family UP12_RS18500 PF13416 Bacterial extracellular solute-binding protein UP12_RS18505 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS18510 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS18515 PF07745 Glycosyl hydrolase family 53 UP12_RS18520 PF02449 Beta-galactosidase UP12_RS18520 PF08532 Beta-galactosidase trimerisation domain UP12_RS18520 PF08533 Beta-galactosidase C-terminal domain UP12_RS18525 PF03600 Citrate transporter UP12_RS18535 PF12679 ABC-2 family transporter protein UP12_RS18540 PF00005 ABC transporter UP12_RS18550 PF03831 PhnA domain UP12_RS18550 PF08274 PhnA Zinc-Ribbon UP12_RS18555 PF02595 Glycerate kinase family UP12_RS18560 PF02447 GntP family permease UP12_RS18565 PF13556 PucR C-terminal helix-turn-helix domain UP12_RS18565 PF17853 GGDEF-like domain UP12_RS18565 PF05651 Putative sugar diacid recognition UP12_RS18570 PF00440 Bacterial regulatory proteins, tetR family UP12_RS18570 PF17922 Tetracyclin repressor-like, C-terminal domain UP12_RS18575 PF07690 Major Facilitator Superfamily UP12_RS18585 PF00005 ABC transporter UP12_RS18595 PF18801 response regulator aspartate phosphatase H, N terminal UP12_RS18600 PF03123 CAT RNA binding domain UP12_RS18600 PF00874 PRD domain UP12_RS18605 PF00232 Glycosyl hydrolase family 1 UP12_RS18610 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UP12_RS18610 PF02378 Phosphotransferase system, EIIC UP12_RS18610 PF00367 phosphotransferase system, EIIB UP12_RS18635 PF00293 NUDIX domain UP12_RS18650 PF00324 Amino acid permease UP12_RS18655 PF00356 Bacterial regulatory proteins, lacI family UP12_RS18665 PF07690 Major Facilitator Superfamily UP12_RS18670 PF18317 Shikimate 5'-dehydrogenase C-terminal domain UP12_RS18670 PF08501 Shikimate dehydrogenase substrate binding domain UP12_RS18675 PF07690 Major Facilitator Superfamily UP12_RS18695 PF00232 Glycosyl hydrolase family 1 UP12_RS18700 PF00392 Bacterial regulatory proteins, gntR family UP12_RS18700 PF07702 UTRA domain UP12_RS18710 PF02567 Phenazine biosynthesis-like protein UP12_RS18715 PF03466 LysR substrate binding domain UP12_RS18715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_RS18735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS18735 PF00672 HAMP domain UP12_RS18735 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS18740 PF00072 Response regulator receiver domain UP12_RS18740 PF00486 Transcriptional regulatory protein, C terminal UP12_RS18745 PF03176 MMPL family UP12_RS18745 PF12823 Domain of unknown function (DUF3817) UP12_RS18755 PF07690 Major Facilitator Superfamily UP12_RS18810 PF02590 Predicted SPOUT methyltransferase UP12_RS18815 PF02361 Cobalt transport protein UP12_RS18820 PF12558 ATP-binding cassette cobalt transporter UP12_RS18820 PF00005 ABC transporter UP12_RS18825 PF07155 ECF-type riboflavin transporter, S component UP12_RS18840 PF00005 ABC transporter UP12_RS18845 PF00583 Acetyltransferase (GNAT) family UP12_RS18850 PF13180 PDZ domain UP12_RS18855 PF00753 Metallo-beta-lactamase superfamily UP12_RS18860 PF09648 YycH protein UP12_RS18865 PF07435 YycH protein UP12_RS18870 PF00672 HAMP domain UP12_RS18870 PF13426 PAS domain UP12_RS18870 PF00512 His Kinase A (phospho-acceptor) domain UP12_RS18870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS18875 PF00486 Transcriptional regulatory protein, C terminal UP12_RS18875 PF00072 Response regulator receiver domain UP12_RS18900 PF00578 AhpC/TSA family UP12_RS18910 PF04235 Protein of unknown function (DUF418) UP12_RS18915 PF00709 Adenylosuccinate synthetase UP12_RS18920 PF00440 Bacterial regulatory proteins, tetR family UP12_RS18925 PF00067 Cytochrome P450 UP12_RS18930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_RS18935 PF00772 DnaB-like helicase N terminal domain UP12_RS18935 PF03796 DnaB-like helicase C terminal domain UP12_RS18940 PF16226 Domain of unknown function (DUF4885) UP12_RS18950 PF00756 Putative esterase UP12_RS18955 PF00106 short chain dehydrogenase UP12_RS18960 PF00425 chorismate binding enzyme UP12_RS18965 PF13193 AMP-binding enzyme C-terminal domain UP12_RS18965 PF00501 AMP-binding enzyme UP12_RS18970 PF00857 Isochorismatase family UP12_RS18970 PF00550 Phosphopantetheine attachment site UP12_RS18975 PF00668 Condensation domain UP12_RS18975 PF00975 Thioesterase domain UP12_RS18975 PF00550 Phosphopantetheine attachment site UP12_RS18975 PF00501 AMP-binding enzyme UP12_RS18975 PF13193 AMP-binding enzyme C-terminal domain UP12_RS18980 PF03621 MbtH-like protein UP12_RS18985 PF01497 Periplasmic binding protein UP12_RS18985 PF12833 Helix-turn-helix domain UP12_RS18990 PF01497 Periplasmic binding protein UP12_RS18995 PF00756 Putative esterase UP12_RS19000 PF07690 Major Facilitator Superfamily UP12_RS19005 PF01281 Ribosomal protein L9, N-terminal domain UP12_RS19005 PF03948 Ribosomal protein L9, C-terminal domain UP12_RS19010 PF01368 DHH family UP12_RS19010 PF02272 DHHA1 domain UP12_RS19020 PF01368 DHH family UP12_RS19020 PF02833 DHHA2 domain UP12_RS19025 PF13739 Deacetylase PdaC UP12_RS19025 PF11738 Protein of unknown function (DUF3298) UP12_RS19030 PF08281 Sigma-70, region 4 UP12_RS19030 PF04542 Sigma-70 region 2 UP12_RS19040 PF06628 Catalase-related immune-responsive UP12_RS19040 PF00199 Catalase UP12_RS19045 PF03358 NADPH-dependent FMN reductase UP12_RS19050 PF01738 Dienelactone hydrolase family UP12_RS19055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_RS19060 PF00528 Binding-protein-dependent transport system inner membrane component UP12_RS19065 PF00005 ABC transporter UP12_RS19065 PF00571 CBS domain UP12_RS19070 PF01084 Ribosomal protein S18 UP12_RS19075 PF00436 Single-strand binding protein family UP12_RS19080 PF01250 Ribosomal protein S6 UP12_RS19085 PF01926 50S ribosome-binding GTPase UP12_RS19085 PF06071 Protein of unknown function (DUF933) UP12_RS19090 PF06107 Bacterial protein of unknown function (DUF951) UP12_RS19110 PF06866 Protein of unknown function (DUF1256) UP12_RS19115 PF02195 ParB-like nuclease domain UP12_RS19115 PF17762 HTH domain found in ParB protein UP12_RS19120 PF13614 AAA domain UP12_RS19130 PF02195 ParB-like nuclease domain UP12_RS19130 PF17762 HTH domain found in ParB protein UP12_RS19135 PF02527 rRNA small subunit methyltransferase G UP12_RS19140 PF13932 GidA associated domain UP12_RS19140 PF01134 Glucose inhibited division protein A UP12_RS19145 PF10396 GTP-binding protein TrmE N-terminus UP12_RS19145 PF01926 50S ribosome-binding GTPase UP12_RS19145 PF12631 MnmE helical domain UP12_RS19150 PF01424 R3H domain UP12_RS19150 PF14804 Jag N-terminus UP12_RS19155 PF02096 60Kd inner membrane protein UP12_RS19160 PF00825 Ribonuclease P UP12_RS19170 PF01336 OB-fold nucleic acid binding domain UP12_RS19170 PF00152 tRNA synthetases class II (D, K and N) UP12_RS19175 PF02768 DNA polymerase III beta subunit, C-terminal domain UP12_RS19175 PF02767 DNA polymerase III beta subunit, central domain UP12_RS19175 PF00712 DNA polymerase III beta subunit, N-terminal domain UP12_RS19210 PF00986 DNA gyrase B subunit, carboxyl terminus UP12_RS19210 PF00204 DNA gyrase B UP12_RS19210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_RS19210 PF01751 Toprim domain UP12_RS19230 PF03989 DNA gyrase C-terminal domain, beta-propeller UP12_RS19230 PF00521 DNA gyrase/topoisomerase IV, subunit A UP12_RS19630 PF06480 FtsH Extracellular UP12_RS19630 PF01434 Peptidase family M41 UP12_RS19630 PF00004 ATPase family associated with various cellular activities (AAA) UP12_RS19630 PF17862 AAA+ lid domain