CU648_RS00010	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS00135	SM00382	ATPases associated with a variety of cellular activities
CU648_RS00155	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU648_RS00155	SM01134	CU648_RS00155
CU648_RS00195	SM00861	Transketolase, pyrimidine binding domain
CU648_RS00260	SM00116	Domain in cystathionine beta-synthase and other proteins.
CU648_RS00260	SM00382	ATPases associated with a variety of cellular activities
CU648_RS00295	SM00060	Fibronectin type 3 domain
CU648_RS00295	SM00495	Chitin-binding domain type 3
CU648_RS00330	SM00849	Metallo-beta-lactamase superfamily
CU648_RS00400	SM00341	Helicase and RNase D C-terminal
CU648_RS00400	SM00487	DEAD-like helicases superfamily
CU648_RS00400	SM00490	helicase superfamily c-terminal domain
CU648_RS00400	SM00956	CU648_RS00400
CU648_RS00450	SM01131	CU648_RS00450
CU648_RS00485	SM01130	CU648_RS00485
CU648_RS00505	SM00091	PAS domain
CU648_RS00505	SM00382	ATPases associated with a variety of cellular activities
CU648_RS00575	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CU648_RS00620	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CU648_RS00625	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS00625	SM00387	Histidine kinase-like ATPases
CU648_RS00625	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS00630	SM00448	cheY-homologous receiver domain
CU648_RS00630	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS00670	SM00344	helix_turn_helix ASNC type
CU648_RS00850	SM00382	ATPases associated with a variety of cellular activities
CU648_RS00855	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS00935	SM00062	Bacterial periplasmic substrate-binding proteins
CU648_RS00940	SM00382	ATPases associated with a variety of cellular activities
CU648_RS00970	SM00028	Tetratricopeptide repeats
CU648_RS01075	SM00382	ATPases associated with a variety of cellular activities
CU648_RS01125	SM00830	Chorismate mutase type II
CU648_RS01165	SM00287	Bacterial SH3 domain homologues
CU648_RS01220	SM00382	ATPases associated with a variety of cellular activities
CU648_RS01240	SM01133	CU648_RS01240
CU648_RS01275	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS01295	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CU648_RS01315	SM00346	helix_turn_helix isocitrate lyase regulation
CU648_RS01355	SM00098	Alkaline phosphatase homologues
CU648_RS01365	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS01390	SM00850	LytTr DNA-binding domain
CU648_RS01500	SM01060	CU648_RS01500
CU648_RS01535	SM00382	ATPases associated with a variety of cellular activities
CU648_RS01550	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS01560	SM00889	Elongation factor G, domain IV
CU648_RS01585	SM00382	ATPases associated with a variety of cellular activities
CU648_RS01590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS01600	SM00860	SMI1 / KNR4 family
CU648_RS01610	SM00382	ATPases associated with a variety of cellular activities
CU648_RS01635	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS01635	SM00871	Bacterial transcription activator, effector binding domain
CU648_RS01660	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS01735	SM00422	helix_turn_helix, mercury resistance
CU648_RS01795	SM00797	Allophanate hydrolase subunit 2
CU648_RS01800	SM00796	Allophanate hydrolase subunit 1
CU648_RS01805	SM00346	helix_turn_helix isocitrate lyase regulation
CU648_RS01840	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS01905	SM00849	Metallo-beta-lactamase superfamily
CU648_RS01990	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS02090	SM01060	CU648_RS02090
CU648_RS02210	SM00382	ATPases associated with a variety of cellular activities
CU648_RS02235	SM00226	Low molecular weight phosphatase family
CU648_RS02250	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS02260	SM00028	Tetratricopeptide repeats
CU648_RS02280	SM00344	helix_turn_helix ASNC type
CU648_RS02325	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS02370	SM00448	cheY-homologous receiver domain
CU648_RS02370	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS02375	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS02375	SM00387	Histidine kinase-like ATPases
CU648_RS02375	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS02435	SM00849	Metallo-beta-lactamase superfamily
CU648_RS02480	SM00422	helix_turn_helix, mercury resistance
CU648_RS02500	SM00382	ATPases associated with a variety of cellular activities
CU648_RS02510	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS02520	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS02520	SM00387	Histidine kinase-like ATPases
CU648_RS02520	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS02525	SM00448	cheY-homologous receiver domain
CU648_RS02525	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS02610	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS02620	SM00860	SMI1 / KNR4 family
CU648_RS02640	SM00287	Bacterial SH3 domain homologues
CU648_RS02640	SM00644	CU648_RS02640
CU648_RS02705	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS02730	SM00382	ATPases associated with a variety of cellular activities
CU648_RS02740	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS02800	SM00382	ATPases associated with a variety of cellular activities
CU648_RS02850	SM00422	helix_turn_helix, mercury resistance
CU648_RS02865	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS02940	SM00382	ATPases associated with a variety of cellular activities
CU648_RS02955	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS03010	SM01266	CU648_RS03010
CU648_RS03060	SM00028	Tetratricopeptide repeats
CU648_RS03085	SM01091	Transporter associated domain
CU648_RS03090	SM00422	helix_turn_helix, mercury resistance
CU648_RS03135	SM01350	CU648_RS03135
CU648_RS03140	SM00861	Transketolase, pyrimidine binding domain
CU648_RS03165	SM00829	Enoylreductase
CU648_RS03185	SM01276	CU648_RS03185
CU648_RS03250	SM00914	CU648_RS03250
CU648_RS03280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS03280	SM00866	CU648_RS03280
CU648_RS03320	SM00849	Metallo-beta-lactamase superfamily
CU648_RS03370	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS03375	SM00636	CU648_RS03375
CU648_RS03425	SM00871	Bacterial transcription activator, effector binding domain
CU648_RS03445	SM00382	ATPases associated with a variety of cellular activities
CU648_RS03480	SM00849	Metallo-beta-lactamase superfamily
CU648_RS03485	SM00641	Glycosyl hydrolases family 25
CU648_RS03550	SM00849	Metallo-beta-lactamase superfamily
CU648_RS03555	SM00829	Enoylreductase
CU648_RS03680	SM00829	Enoylreductase
CU648_RS03685	SM00855	Phosphoglycerate mutase family
CU648_RS03695	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CU648_RS03695	SM00534	ATPase domain of DNA mismatch repair MUTS family
CU648_RS03705	SM00642	Alpha-amylase domain
CU648_RS03775	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS03780	SM00829	Enoylreductase
CU648_RS03800	SM00028	Tetratricopeptide repeats
CU648_RS03865	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CU648_RS03915	SM00479	CU648_RS03915
CU648_RS03920	SM00357	Cold shock protein domain
CU648_RS03945	SM01022	CU648_RS03945
CU648_RS04060	SM00852	Probable molybdopterin binding domain
CU648_RS04080	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS04100	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU648_RS04100	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CU648_RS04215	SM00382	ATPases associated with a variety of cellular activities
CU648_RS04245	SM00434	DNA Topoisomerase IV
CU648_RS04250	SM00387	Histidine kinase-like ATPases
CU648_RS04250	SM00433	TopoisomeraseII
CU648_RS04260	SM00881	CoA binding domain
CU648_RS04265	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU648_RS04270	SM00448	cheY-homologous receiver domain
CU648_RS04270	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS04285	SM01207	CU648_RS04285
CU648_RS04300	SM00257	Lysin motif
CU648_RS04300	SM00636	CU648_RS04300
CU648_RS04320	SM00479	CU648_RS04320
CU648_RS04345	SM00382	ATPases associated with a variety of cellular activities
CU648_RS04390	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CU648_RS04465	SM00644	CU648_RS04465
CU648_RS04465	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
CU648_RS04470	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CU648_RS04485	SM00091	PAS domain
CU648_RS04485	SM00387	Histidine kinase-like ATPases
CU648_RS04485	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS04515	SM01058	CarD-like/TRCF domain
CU648_RS04620	SM00382	ATPases associated with a variety of cellular activities
CU648_RS04670	SM00644	CU648_RS04670
CU648_RS04685	SM00382	ATPases associated with a variety of cellular activities
CU648_RS04690	SM00382	ATPases associated with a variety of cellular activities
CU648_RS04705	SM00861	Transketolase, pyrimidine binding domain
CU648_RS04720	SM00382	ATPases associated with a variety of cellular activities
CU648_RS04725	SM00062	Bacterial periplasmic substrate-binding proteins
CU648_RS04740	SM00857	Resolvase, N terminal domain
CU648_RS04790	SM01230	CU648_RS04790
CU648_RS04795	SM00422	helix_turn_helix, mercury resistance
CU648_RS04815	SM00382	ATPases associated with a variety of cellular activities
CU648_RS04845	SM00287	Bacterial SH3 domain homologues
CU648_RS04865	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU648_RS04865	SM01134	CU648_RS04865
CU648_RS04900	SM00636	CU648_RS04900
CU648_RS04920	SM00411	bacterial (prokaryotic) histone like domain
CU648_RS04955	SM00382	ATPases associated with a variety of cellular activities
CU648_RS04980	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS04990	SM00478	endonuclease III
CU648_RS05025	SM00052	Putative diguanylate phosphodiesterase
CU648_RS05025	SM00091	PAS domain
CU648_RS05025	SM00267	diguanylate cyclase
CU648_RS05055	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS05080	SM00148	Phospholipase C, catalytic domain (part); domain X
CU648_RS05090	SM00257	Lysin motif
CU648_RS05120	SM00387	Histidine kinase-like ATPases
CU648_RS05120	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS05125	SM00448	cheY-homologous receiver domain
CU648_RS05125	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS05140	SM00382	ATPases associated with a variety of cellular activities
CU648_RS05145	SM00853	MutL C terminal dimerisation domain
CU648_RS05145	SM01340	CU648_RS05145
CU648_RS05150	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CU648_RS05150	SM00534	ATPase domain of DNA mismatch repair MUTS family
CU648_RS05165	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS05195	SM00322	K homology RNA-binding domain
CU648_RS05195	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU648_RS05210	SM00852	Probable molybdopterin binding domain
CU648_RS05260	SM00382	ATPases associated with a variety of cellular activities
CU648_RS05270	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS05270	SM00866	CU648_RS05270
CU648_RS05275	SM00382	ATPases associated with a variety of cellular activities
CU648_RS05275	SM00843	CU648_RS05275
CU648_RS05290	SM00849	Metallo-beta-lactamase superfamily
CU648_RS05300	SM01130	CU648_RS05300
CU648_RS05310	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CU648_RS05345	SM00316	Ribosomal protein S1-like RNA-binding domain
CU648_RS05345	SM00322	K homology RNA-binding domain
CU648_RS05350	SM01387	CU648_RS05350
CU648_RS05355	SM00904	Riboflavin kinase
CU648_RS05390	SM00316	Ribosomal protein S1-like RNA-binding domain
CU648_RS05390	SM00322	K homology RNA-binding domain
CU648_RS05400	SM00479	CU648_RS05400
CU648_RS05400	SM00481	DNA polymerase alpha chain like domain
CU648_RS05415	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU648_RS05460	SM00382	ATPases associated with a variety of cellular activities
CU648_RS05460	SM01086	C-terminal, D2-small domain, of ClpB protein
CU648_RS05480	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CU648_RS05480	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CU648_RS05480	SM00493	CU648_RS05480
CU648_RS05490	SM00881	CoA binding domain
CU648_RS05540	SM00382	ATPases associated with a variety of cellular activities
CU648_RS05540	SM00962	SRP54-type protein, GTPase domain
CU648_RS05540	SM00963	SRP54-type protein, helical bundle domain
CU648_RS05550	SM00382	ATPases associated with a variety of cellular activities
CU648_RS05550	SM00962	SRP54-type protein, GTPase domain
CU648_RS05550	SM00963	SRP54-type protein, helical bundle domain
CU648_RS05555	SM00968	SMC proteins Flexible Hinge Domain
CU648_RS05560	SM00358	Double-stranded RNA binding motif
CU648_RS05560	SM00535	Ribonuclease III family
CU648_RS05570	SM00822	CU648_RS05570
CU648_RS05575	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CU648_RS05590	SM00487	DEAD-like helicases superfamily
CU648_RS05590	SM00490	helicase superfamily c-terminal domain
CU648_RS05595	SM01120	CU648_RS05595
CU648_RS05595	SM01121	CU648_RS05595
CU648_RS05615	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
CU648_RS05630	SM00220	Serine/Threonine protein kinases, catalytic domain
CU648_RS05630	SM00740	CU648_RS05630
CU648_RS05635	SM00331	Sigma factor PP2C-like phosphatases
CU648_RS05635	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CU648_RS05660	SM00487	DEAD-like helicases superfamily
CU648_RS05660	SM00490	helicase superfamily c-terminal domain
CU648_RS05670	SM01409	CU648_RS05670
CU648_RS05675	SM00072	Guanylate kinase homologues.
CU648_RS05690	SM00831	Cation transporter/ATPase, N-terminus
CU648_RS05740	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CU648_RS05755	SM00851	MGS-like domain
CU648_RS05755	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CU648_RS05755	SM01209	CU648_RS05755
CU648_RS05760	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CU648_RS05785	SM00363	S4 RNA-binding domain
CU648_RS05810	SM00363	S4 RNA-binding domain
CU648_RS05855	SM00864	Tubulin/FtsZ family, GTPase domain
CU648_RS05855	SM00865	Tubulin/FtsZ family, C-terminal domain
CU648_RS05860	SM00842	Cell division protein FtsA
CU648_RS05900	SM00740	CU648_RS05900
CU648_RS05905	SM00740	CU648_RS05905
CU648_RS05935	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
CU648_RS05955	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU648_RS05995	SM00855	Phosphoglycerate mutase family
CU648_RS06025	SM00507	HNH nucleases
CU648_RS06070	SM00878	Biotin carboxylase C-terminal domain
CU648_RS06095	SM00670	Large family of predicted nucleotide-binding domains
CU648_RS06120	SM00838	Elongation factor G C-terminus
CU648_RS06200	SM00861	Transketolase, pyrimidine binding domain
CU648_RS06235	SM00849	Metallo-beta-lactamase superfamily
CU648_RS06305	SM00052	Putative diguanylate phosphodiesterase
CU648_RS06355	SM00267	diguanylate cyclase
CU648_RS06410	SM00387	Histidine kinase-like ATPases
CU648_RS06410	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS06425	SM00354	helix_turn _helix lactose operon repressor
CU648_RS06445	SM00642	Alpha-amylase domain
CU648_RS06450	SM00642	Alpha-amylase domain
CU648_RS06455	SM00382	ATPases associated with a variety of cellular activities
CU648_RS06490	SM00382	ATPases associated with a variety of cellular activities
CU648_RS06580	SM01007	Class II Aldolase and Adducin N-terminal domain
CU648_RS06610	SM00267	diguanylate cyclase
CU648_RS06645	SM01061	CAT RNA binding domain
CU648_RS06655	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS06655	SM00866	CU648_RS06655
CU648_RS06670	SM00849	Metallo-beta-lactamase superfamily
CU648_RS06775	SM00387	Histidine kinase-like ATPases
CU648_RS06785	SM00936	Penicillin-binding protein 5, C-terminal domain 
CU648_RS06795	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS06800	SM00382	ATPases associated with a variety of cellular activities
CU648_RS06820	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS06840	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CU648_RS06935	SM00354	helix_turn _helix lactose operon repressor
CU648_RS06955	SM00704	CDGSH-type zinc finger. Function unknown.
CU648_RS06985	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS06985	SM00876	Biotin and Thiamin Synthesis associated domain
CU648_RS07040	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS07075	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CU648_RS07090	SM00849	Metallo-beta-lactamase superfamily
CU648_RS07115	SM00849	Metallo-beta-lactamase superfamily
CU648_RS07170	SM00382	ATPases associated with a variety of cellular activities
CU648_RS07180	SM00062	Bacterial periplasmic substrate-binding proteins
CU648_RS07180	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CU648_RS07220	SM00861	Transketolase, pyrimidine binding domain
CU648_RS07240	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CU648_RS07255	SM00091	PAS domain
CU648_RS07255	SM00382	ATPases associated with a variety of cellular activities
CU648_RS07280	SM00448	cheY-homologous receiver domain
CU648_RS07290	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU648_RS07305	SM00363	S4 RNA-binding domain
CU648_RS07310	SM00861	Transketolase, pyrimidine binding domain
CU648_RS07345	SM00878	Biotin carboxylase C-terminal domain
CU648_RS07395	SM00382	ATPases associated with a variety of cellular activities
CU648_RS07415	SM00841	Elongation factor P, C-terminal
CU648_RS07415	SM01185	CU648_RS07415
CU648_RS07450	SM00529	Helix-turn-helix diphteria tox regulatory element
CU648_RS07470	SM00450	Rhodanese Homology Domain
CU648_RS07475	SM00354	helix_turn _helix lactose operon repressor
CU648_RS07530	SM00382	ATPases associated with a variety of cellular activities
CU648_RS07535	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS07570	SM00487	DEAD-like helicases superfamily
CU648_RS07570	SM00490	helicase superfamily c-terminal domain
CU648_RS07620	SM00478	endonuclease III
CU648_RS07655	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS07675	SM01236	CU648_RS07675
CU648_RS07685	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS07700	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
CU648_RS07735	SM00382	ATPases associated with a variety of cellular activities
CU648_RS07790	SM01018	B12 binding domain
CU648_RS07815	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS07825	SM00849	Metallo-beta-lactamase superfamily
CU648_RS07865	SM00382	ATPases associated with a variety of cellular activities
CU648_RS07930	SM00382	ATPases associated with a variety of cellular activities
CU648_RS07945	SM00518	AP endonuclease family 2
CU648_RS07950	SM00487	DEAD-like helicases superfamily
CU648_RS07950	SM00490	helicase superfamily c-terminal domain
CU648_RS07985	SM00400	zinc finger
CU648_RS07985	SM00493	CU648_RS07985
CU648_RS07985	SM00766	DNA primase DnaG DnaB-binding
CU648_RS08005	SM00116	Domain in cystathionine beta-synthase and other proteins.
CU648_RS08040	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU648_RS08075	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS08090	SM00271	DnaJ molecular chaperone homology domain
CU648_RS08110	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS08120	SM00838	Elongation factor G C-terminus
CU648_RS08150	SM00849	Metallo-beta-lactamase superfamily
CU648_RS08160	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CU648_RS08180	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU648_RS08190	SM01103	CU648_RS08190
CU648_RS08245	SM00954	Region found in RelA / SpoT proteins
CU648_RS08255	SM00098	Alkaline phosphatase homologues
CU648_RS08280	SM00855	Phosphoglycerate mutase family
CU648_RS08325	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS08350	SM00382	ATPases associated with a variety of cellular activities
CU648_RS08445	SM00732	Likely ribonuclease with RNase H fold.
CU648_RS08455	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CU648_RS08490	SM00028	Tetratricopeptide repeats
CU648_RS08510	SM00382	ATPases associated with a variety of cellular activities
CU648_RS08555	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU648_RS08555	SM00954	Region found in RelA / SpoT proteins
CU648_RS08600	SM01323	CU648_RS08600
CU648_RS08620	SM00382	ATPases associated with a variety of cellular activities
CU648_RS08625	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CU648_RS08655	SM00257	Lysin motif
CU648_RS08705	SM00382	ATPases associated with a variety of cellular activities
CU648_RS08710	SM00387	Histidine kinase-like ATPases
CU648_RS08715	SM00448	cheY-homologous receiver domain
CU648_RS08715	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS08725	SM01317	CU648_RS08725
CU648_RS08850	SM00257	Lysin motif
CU648_RS08860	SM01004	Delta-aminolevulinic acid dehydratase
CU648_RS08885	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS08900	SM00382	ATPases associated with a variety of cellular activities
CU648_RS08900	SM00464	Found in ATP-dependent protease La (LON)
CU648_RS08905	SM00382	ATPases associated with a variety of cellular activities
CU648_RS08910	SM00382	ATPases associated with a variety of cellular activities
CU648_RS08910	SM00994	ClpX C4-type zinc finger
CU648_RS08910	SM01086	C-terminal, D2-small domain, of ClpB protein
CU648_RS08975	SM00909	Sporulation and spore germination
CU648_RS09010	SM00421	helix_turn_helix, Lux Regulon
CU648_RS09050	SM00382	ATPases associated with a variety of cellular activities
CU648_RS09055	SM00382	ATPases associated with a variety of cellular activities
CU648_RS09065	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS09065	SM00448	cheY-homologous receiver domain
CU648_RS09080	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS09105	SM00382	ATPases associated with a variety of cellular activities
CU648_RS09155	SM00465	GIY-YIG type nucleases (URI domain)
CU648_RS09165	SM00893	Electron transfer flavoprotein domain
CU648_RS09170	SM00893	Electron transfer flavoprotein domain
CU648_RS09235	SM00382	ATPases associated with a variety of cellular activities
CU648_RS09240	SM00387	Histidine kinase-like ATPases
CU648_RS09240	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS09245	SM00448	cheY-homologous receiver domain
CU648_RS09245	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS09260	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CU648_RS09280	SM00382	ATPases associated with a variety of cellular activities
CU648_RS09295	SM00725	NEAr Transporter domain
CU648_RS09300	SM00725	NEAr Transporter domain
CU648_RS09310	SM00363	S4 RNA-binding domain
CU648_RS09320	SM00463	Small MutS-related domain
CU648_RS09320	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CU648_RS09320	SM00534	ATPase domain of DNA mismatch repair MUTS family
CU648_RS09325	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CU648_RS09325	SM00481	DNA polymerase alpha chain like domain
CU648_RS09325	SM00483	DNA polymerase X family
CU648_RS09365	SM00873	B3/4 domain
CU648_RS09365	SM00874	tRNA synthetase B5 domain
CU648_RS09365	SM00896	Ferredoxin-fold anticodon binding domain
CU648_RS09375	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CU648_RS09455	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CU648_RS09465	SM00382	ATPases associated with a variety of cellular activities
CU648_RS09490	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CU648_RS09505	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CU648_RS09505	SM01232	CU648_RS09505
CU648_RS09510	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CU648_RS09510	SM00474	3'-5' exonuclease
CU648_RS09510	SM00475	5'-3' exonuclease
CU648_RS09510	SM00482	DNA polymerase A domain
CU648_RS09515	SM00091	PAS domain
CU648_RS09515	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS09515	SM00387	Histidine kinase-like ATPases
CU648_RS09515	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS09520	SM00448	cheY-homologous receiver domain
CU648_RS09520	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS09545	SM01329	CU648_RS09545
CU648_RS09595	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS09600	SM00919	Malic enzyme, NAD binding domain
CU648_RS09600	SM01274	CU648_RS09600
CU648_RS09605	SM00481	DNA polymerase alpha chain like domain
CU648_RS09650	SM00116	Domain in cystathionine beta-synthase and other proteins.
CU648_RS09660	SM00849	Metallo-beta-lactamase superfamily
CU648_RS09715	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS09725	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CU648_RS09725	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CU648_RS09855	SM00981	CU648_RS09855
CU648_RS09900	SM00363	S4 RNA-binding domain
CU648_RS09900	SM01390	CU648_RS09900
CU648_RS09940	SM00363	S4 RNA-binding domain
CU648_RS09975	SM00116	Domain in cystathionine beta-synthase and other proteins.
CU648_RS09990	SM00448	cheY-homologous receiver domain
CU648_RS09990	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS09995	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS09995	SM00387	Histidine kinase-like ATPases
CU648_RS09995	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS10005	SM00248	ankyrin repeats
CU648_RS10040	SM00354	helix_turn _helix lactose operon repressor
CU648_RS10115	SM00843	CU648_RS10115
CU648_RS10155	SM00849	Metallo-beta-lactamase superfamily
CU648_RS10175	SM00642	Alpha-amylase domain
CU648_RS10195	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU648_RS10200	SM00363	S4 RNA-binding domain
CU648_RS10220	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS10250	SM01058	CarD-like/TRCF domain
CU648_RS10295	SM00852	Probable molybdopterin binding domain
CU648_RS10310	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS10330	SM00450	Rhodanese Homology Domain
CU648_RS10410	SM00382	ATPases associated with a variety of cellular activities
CU648_RS10435	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS10445	SM00382	ATPases associated with a variety of cellular activities
CU648_RS10490	SM00014	Acid phosphatase homologues
CU648_RS10505	SM00852	Probable molybdopterin binding domain
CU648_RS10575	SM00387	Histidine kinase-like ATPases
CU648_RS10580	SM00387	Histidine kinase-like ATPases
CU648_RS10580	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS10615	SM00382	ATPases associated with a variety of cellular activities
CU648_RS10680	SM01234	CU648_RS10680
CU648_RS10685	SM00947	Carbonic anhydrase
CU648_RS10710	SM00894	Excalibur calcium-binding domain
CU648_RS10805	SM00899	CU648_RS10805
CU648_RS10825	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS10825	SM00387	Histidine kinase-like ATPases
CU648_RS10825	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS10830	SM00448	cheY-homologous receiver domain
CU648_RS10830	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS10860	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CU648_RS10880	SM00382	ATPases associated with a variety of cellular activities
CU648_RS10905	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS10920	SM00382	ATPases associated with a variety of cellular activities
CU648_RS10925	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS10925	SM00871	Bacterial transcription activator, effector binding domain
CU648_RS10930	SM00448	cheY-homologous receiver domain
CU648_RS10930	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS10935	SM00387	Histidine kinase-like ATPases
CU648_RS10950	SM00382	ATPases associated with a variety of cellular activities
CU648_RS10970	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS10970	SM00866	CU648_RS10970
CU648_RS11000	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS11000	SM00387	Histidine kinase-like ATPases
CU648_RS11000	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS11005	SM00448	cheY-homologous receiver domain
CU648_RS11005	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS11010	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CU648_RS11055	SM00357	Cold shock protein domain
CU648_RS11095	SM00642	Alpha-amylase domain
CU648_RS11280	SM00316	Ribosomal protein S1-like RNA-binding domain
CU648_RS11290	SM00344	helix_turn_helix ASNC type
CU648_RS11320	SM01298	CU648_RS11320
CU648_RS11325	SM00479	CU648_RS11325
CU648_RS11420	SM00871	Bacterial transcription activator, effector binding domain
CU648_RS11480	SM00382	ATPases associated with a variety of cellular activities
CU648_RS11505	SM00860	SMI1 / KNR4 family
CU648_RS11580	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU648_RS11620	SM00422	helix_turn_helix, mercury resistance
CU648_RS11635	SM00855	Phosphoglycerate mutase family
CU648_RS11645	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS11700	SM00382	ATPases associated with a variety of cellular activities
CU648_RS11720	SM00382	ATPases associated with a variety of cellular activities
CU648_RS11720	SM00930	CU648_RS11720
CU648_RS11735	SM00493	CU648_RS11735
CU648_RS11825	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS11835	SM00849	Metallo-beta-lactamase superfamily
CU648_RS11890	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS11890	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS11970	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS11995	SM00448	cheY-homologous receiver domain
CU648_RS11995	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS12000	SM00387	Histidine kinase-like ATPases
CU648_RS12000	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS12025	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS12025	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS12030	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS12030	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS12050	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS12145	SM01276	CU648_RS12145
CU648_RS12155	SM01276	CU648_RS12155
CU648_RS12190	SM00363	S4 RNA-binding domain
CU648_RS12200	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
CU648_RS12205	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS12275	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS12285	SM00382	ATPases associated with a variety of cellular activities
CU648_RS12305	SM00448	cheY-homologous receiver domain
CU648_RS12305	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS12325	SM00382	ATPases associated with a variety of cellular activities
CU648_RS12365	SM00316	Ribosomal protein S1-like RNA-binding domain
CU648_RS12365	SM00357	Cold shock protein domain
CU648_RS12365	SM00955	CU648_RS12365
CU648_RS12395	SM01192	CU648_RS12395
CU648_RS12395	SM01193	CU648_RS12395
CU648_RS12415	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CU648_RS12520	SM00028	Tetratricopeptide repeats
CU648_RS12560	SM00487	DEAD-like helicases superfamily
CU648_RS12560	SM00490	helicase superfamily c-terminal domain
CU648_RS12575	SM00422	helix_turn_helix, mercury resistance
CU648_RS12600	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS12620	SM00422	helix_turn_helix, mercury resistance
CU648_RS12640	SM00382	ATPases associated with a variety of cellular activities
CU648_RS12655	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU648_RS12655	SM00245	tail specific protease
CU648_RS12665	SM00382	ATPases associated with a variety of cellular activities
CU648_RS12685	SM00957	SecA DEAD-like domain
CU648_RS12685	SM00958	SecA preprotein cross-linking domain
CU648_RS12695	SM00357	Cold shock protein domain
CU648_RS12705	SM00487	DEAD-like helicases superfamily
CU648_RS12705	SM00490	helicase superfamily c-terminal domain
CU648_RS12745	SM00984	UDP binding domain
CU648_RS12760	SM00382	ATPases associated with a variety of cellular activities
CU648_RS12765	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
CU648_RS12985	SM00287	Bacterial SH3 domain homologues
CU648_RS13020	SM00287	Bacterial SH3 domain homologues
CU648_RS13050	SM00487	DEAD-like helicases superfamily
CU648_RS13050	SM00490	helicase superfamily c-terminal domain
CU648_RS13100	SM00382	ATPases associated with a variety of cellular activities
CU648_RS13125	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS13125	SM00387	Histidine kinase-like ATPases
CU648_RS13125	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS13130	SM00448	cheY-homologous receiver domain
CU648_RS13130	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS13155	SM00984	UDP binding domain
CU648_RS13265	SM00382	ATPases associated with a variety of cellular activities
CU648_RS13270	SM00850	LytTr DNA-binding domain
CU648_RS13350	SM00052	Putative diguanylate phosphodiesterase
CU648_RS13350	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CU648_RS13350	SM00091	PAS domain
CU648_RS13350	SM00267	diguanylate cyclase
CU648_RS13370	SM00382	ATPases associated with a variety of cellular activities
CU648_RS13445	SM00226	Low molecular weight phosphatase family
CU648_RS13465	SM00903	Flavin reductase like domain
CU648_RS13505	SM00937	CU648_RS13505
CU648_RS13520	SM00357	Cold shock protein domain
CU648_RS13520	SM00382	ATPases associated with a variety of cellular activities
CU648_RS13520	SM00959	Rho termination factor, N-terminal domain
CU648_RS13545	SM00448	cheY-homologous receiver domain
CU648_RS13595	SM00155	Phospholipase D. Active site motifs.
CU648_RS13605	SM00052	Putative diguanylate phosphodiesterase
CU648_RS13605	SM00267	diguanylate cyclase
CU648_RS13615	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS13625	SM00421	helix_turn_helix, Lux Regulon
CU648_RS13625	SM00448	cheY-homologous receiver domain
CU648_RS13640	SM00382	ATPases associated with a variety of cellular activities
CU648_RS13685	SM00836	DALR anticodon binding domain
CU648_RS13685	SM01016	Arginyl tRNA synthetase N terminal dom
CU648_RS13725	SM00422	helix_turn_helix, mercury resistance
CU648_RS13755	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU648_RS13765	SM00382	ATPases associated with a variety of cellular activities
CU648_RS13810	SM00936	Penicillin-binding protein 5, C-terminal domain 
CU648_RS13875	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS13885	SM00986	Uracil DNA glycosylase superfamily
CU648_RS13885	SM00987	UreE urease accessory protein, C-terminal domain 
CU648_RS13895	SM00382	ATPases associated with a variety of cellular activities
CU648_RS13905	SM00354	helix_turn _helix lactose operon repressor
CU648_RS13940	SM00100	Cyclic nucleotide-monophosphate binding domain
CU648_RS13950	SM00421	helix_turn_helix, Lux Regulon
CU648_RS13950	SM00448	cheY-homologous receiver domain
CU648_RS13955	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CU648_RS13965	SM00267	diguanylate cyclase
CU648_RS13980	SM00448	cheY-homologous receiver domain
CU648_RS13980	SM00850	LytTr DNA-binding domain
CU648_RS14010	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS14035	SM00382	ATPases associated with a variety of cellular activities
CU648_RS14090	SM00448	cheY-homologous receiver domain
CU648_RS14090	SM00850	LytTr DNA-binding domain
CU648_RS14095	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CU648_RS14095	SM00387	Histidine kinase-like ATPases
CU648_RS14155	SM00487	DEAD-like helicases superfamily
CU648_RS14155	SM00490	helicase superfamily c-terminal domain
CU648_RS14165	SM01240	CU648_RS14165
CU648_RS14190	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU648_RS14195	SM00849	Metallo-beta-lactamase superfamily
CU648_RS14210	SM00091	PAS domain
CU648_RS14210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS14210	SM00387	Histidine kinase-like ATPases
CU648_RS14210	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS14215	SM00448	cheY-homologous receiver domain
CU648_RS14215	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS14240	SM00788	Adenylosuccinate synthetase
CU648_RS14255	SM00267	diguanylate cyclase
CU648_RS14300	SM00470	ParB-like nuclease domain
CU648_RS14310	SM00470	ParB-like nuclease domain
CU648_RS14320	SM01228	CU648_RS14320
CU648_RS14330	SM00393	Putative single-stranded nucleic acids-binding domain
CU648_RS14330	SM01245	CU648_RS14330
CU648_RS14350	SM00382	ATPases associated with a variety of cellular activities
CU648_RS14350	SM00760	Bacterial dnaA protein helix-turn-helix domain
CU648_RS14355	SM00480	DNA polymerase III beta subunit
CU648_RS14370	SM00387	Histidine kinase-like ATPases
CU648_RS14370	SM00433	TopoisomeraseII
CU648_RS14375	SM00434	DNA Topoisomerase IV
CU648_RS14410	SM00116	Domain in cystathionine beta-synthase and other proteins.
CU648_RS14410	SM01240	CU648_RS14410
CU648_RS14415	SM00936	Penicillin-binding protein 5, C-terminal domain 
CU648_RS14475	SM00382	ATPases associated with a variety of cellular activities
CU648_RS14485	SM00493	CU648_RS14485
CU648_RS14570	SM00966	SpoVT / AbrB like domain 
CU648_RS14585	SM00493	CU648_RS14585
CU648_RS14590	SM00650	Ribosomal RNA adenine dimethylases
CU648_RS14640	SM01400	CU648_RS14640
CU648_RS14655	SM00487	DEAD-like helicases superfamily
CU648_RS14655	SM00490	helicase superfamily c-terminal domain
CU648_RS14655	SM00982	CU648_RS14655
CU648_RS14655	SM01058	CarD-like/TRCF domain
CU648_RS14660	SM00966	SpoVT / AbrB like domain 
CU648_RS14675	SM00363	S4 RNA-binding domain
CU648_RS14695	SM00316	Ribosomal protein S1-like RNA-binding domain
CU648_RS14710	SM00331	Sigma factor PP2C-like phosphatases
CU648_RS14710	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CU648_RS14715	SM00977	TilS substrate C-terminal domain
CU648_RS14725	SM00382	ATPases associated with a variety of cellular activities
CU648_RS14765	SM00905	Dihydroneopterin aldolase
CU648_RS14775	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS14880	SM00382	ATPases associated with a variety of cellular activities
CU648_RS14880	SM01086	C-terminal, D2-small domain, of ClpB protein
CU648_RS14885	SM00382	ATPases associated with a variety of cellular activities
CU648_RS14895	SM00670	Large family of predicted nucleotide-binding domains
CU648_RS14920	SM00840	CU648_RS14920
CU648_RS14925	SM00535	Ribonuclease III family
CU648_RS14930	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CU648_RS14940	SM00421	helix_turn_helix, Lux Regulon
CU648_RS14955	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CU648_RS14960	SM00649	Ribosomal protein L11/L12
CU648_RS14990	SM00663	RNA polymerase I subunit A N-terminus
CU648_RS15010	SM00838	Elongation factor G C-terminus
CU648_RS15010	SM00889	Elongation factor G, domain IV
CU648_RS15020	SM01403	CU648_RS15020
CU648_RS15040	SM01382	CU648_RS15040
CU648_RS15040	SM01383	CU648_RS15040
CU648_RS15055	SM00322	K homology RNA-binding domain
CU648_RS15075	SM01374	CU648_RS15075
CU648_RS15080	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CU648_RS15140	SM00316	Ribosomal protein S1-like RNA-binding domain
CU648_RS15160	SM00662	RNA polymerases D
CU648_RS15170	SM00382	ATPases associated with a variety of cellular activities
CU648_RS15175	SM00382	ATPases associated with a variety of cellular activities
CU648_RS15205	SM00646	CU648_RS15205
CU648_RS15220	SM01251	CU648_RS15220
CU648_RS15345	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS15345	SM00895	CU648_RS15345
CU648_RS15360	SM01350	CU648_RS15360
CU648_RS15395	SM00382	ATPases associated with a variety of cellular activities
CU648_RS15395	SM00930	CU648_RS15395
CU648_RS15405	SM00829	Enoylreductase
CU648_RS15455	SM00382	ATPases associated with a variety of cellular activities
CU648_RS15460	SM00382	ATPases associated with a variety of cellular activities
CU648_RS15475	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS15580	SM00563	Phosphate acyltransferases
CU648_RS15595	SM00354	helix_turn _helix lactose operon repressor
CU648_RS15655	SM00382	ATPases associated with a variety of cellular activities
CU648_RS15685	SM00382	ATPases associated with a variety of cellular activities
CU648_RS15690	SM00382	ATPases associated with a variety of cellular activities
CU648_RS15770	SM00487	DEAD-like helicases superfamily
CU648_RS15770	SM00490	helicase superfamily c-terminal domain
CU648_RS15795	SM01005	Alanine racemase, C-terminal domain
CU648_RS15810	SM00316	Ribosomal protein S1-like RNA-binding domain
CU648_RS15810	SM00732	Likely ribonuclease with RNase H fold.
CU648_RS15820	SM00731	SprT homologues.
CU648_RS15925	SM00382	ATPases associated with a variety of cellular activities
CU648_RS15930	SM00881	CoA binding domain
CU648_RS15945	SM00883	Chaperonin 10 Kd subunit
CU648_RS15980	SM00448	cheY-homologous receiver domain
CU648_RS15980	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS15985	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS15985	SM00387	Histidine kinase-like ATPases
CU648_RS15985	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS16045	SM00382	ATPases associated with a variety of cellular activities
CU648_RS16050	SM00387	Histidine kinase-like ATPases
CU648_RS16050	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS16055	SM00448	cheY-homologous receiver domain
CU648_RS16055	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS16105	SM01001	AIR carboxylase
CU648_RS16115	SM00998	Adenylosuccinate lyase C-terminus
CU648_RS16130	SM01211	CU648_RS16130
CU648_RS16155	SM00798	AICARFT/IMPCHase bienzyme
CU648_RS16155	SM00851	MGS-like domain
CU648_RS16160	SM01209	CU648_RS16160
CU648_RS16160	SM01210	CU648_RS16160
CU648_RS16170	SM00244	prohibitin homologues
CU648_RS16195	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CU648_RS16195	SM00292	breast cancer carboxy-terminal domain
CU648_RS16195	SM00532	Ligase N family
CU648_RS16230	SM00382	ATPases associated with a variety of cellular activities
CU648_RS16230	SM00930	CU648_RS16230
CU648_RS16260	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS16280	SM00845	GatB domain
CU648_RS16285	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CU648_RS16300	SM00382	ATPases associated with a variety of cellular activities
CU648_RS16345	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CU648_RS16345	SM00387	Histidine kinase-like ATPases
CU648_RS16345	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS16365	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CU648_RS16410	SM01007	Class II Aldolase and Adducin N-terminal domain
CU648_RS16540	SM00448	cheY-homologous receiver domain
CU648_RS16550	SM00062	Bacterial periplasmic substrate-binding proteins
CU648_RS16550	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CU648_RS16555	SM00382	ATPases associated with a variety of cellular activities
CU648_RS16565	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS16565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS16570	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS16570	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS16575	SM00642	Alpha-amylase domain
CU648_RS16595	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CU648_RS16595	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CU648_RS16595	SM00493	CU648_RS16595
CU648_RS16615	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS16615	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS16635	SM00382	ATPases associated with a variety of cellular activities
CU648_RS16645	SM00382	ATPases associated with a variety of cellular activities
CU648_RS16650	SM00060	Fibronectin type 3 domain
CU648_RS16650	SM00636	CU648_RS16650
CU648_RS16650	SM00637	CU648_RS16650
CU648_RS16685	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS16710	SM00946	Prolyl-tRNA synthetase, C-terminal
CU648_RS16800	SM00226	Low molecular weight phosphatase family
CU648_RS16895	SM00478	endonuclease III
CU648_RS16915	SM00382	ATPases associated with a variety of cellular activities
CU648_RS16935	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS17000	SM00984	UDP binding domain
CU648_RS17085	SM00478	endonuclease III
CU648_RS17085	SM00525	CU648_RS17085
CU648_RS17110	SM00382	ATPases associated with a variety of cellular activities
CU648_RS17130	SM00382	ATPases associated with a variety of cellular activities
CU648_RS17395	SM00567	E-Z type HEAT repeats
CU648_RS17410	SM00052	Putative diguanylate phosphodiesterase
CU648_RS17410	SM00091	PAS domain
CU648_RS17410	SM00267	diguanylate cyclase
CU648_RS17420	SM00763	PrkA AAA domain
CU648_RS17440	SM00365	Leucine-rich repeat, SDS22-like subfamily
CU648_RS17440	SM00369	Leucine-rich repeats, typical (most populated) subfamily
CU648_RS17440	SM00725	NEAr Transporter domain
CU648_RS17450	SM00062	Bacterial periplasmic substrate-binding proteins
CU648_RS17455	SM00382	ATPases associated with a variety of cellular activities
CU648_RS17475	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
CU648_RS17485	SM00244	prohibitin homologues
CU648_RS17490	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS17490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS17495	SM00091	PAS domain
CU648_RS17495	SM00387	Histidine kinase-like ATPases
CU648_RS17500	SM00448	cheY-homologous receiver domain
CU648_RS17520	SM00248	ankyrin repeats
CU648_RS17530	SM00382	ATPases associated with a variety of cellular activities
CU648_RS17555	SM00448	cheY-homologous receiver domain
CU648_RS17555	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS17560	SM00387	Histidine kinase-like ATPases
CU648_RS17560	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS17575	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS17575	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS17580	SM00387	Histidine kinase-like ATPases
CU648_RS17585	SM00448	cheY-homologous receiver domain
CU648_RS17595	SM00919	Malic enzyme, NAD binding domain
CU648_RS17595	SM01274	CU648_RS17595
CU648_RS17610	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS17620	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS17620	SM00387	Histidine kinase-like ATPases
CU648_RS17620	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS17625	SM00448	cheY-homologous receiver domain
CU648_RS17625	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS17645	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU648_RS17645	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CU648_RS17660	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CU648_RS17660	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CU648_RS17675	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS17690	SM00028	Tetratricopeptide repeats
CU648_RS17690	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS17735	SM01091	Transporter associated domain
CU648_RS17750	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS17780	SM00382	ATPases associated with a variety of cellular activities
CU648_RS17805	SM00327	von Willebrand factor (vWF) type A domain
CU648_RS17810	SM00382	ATPases associated with a variety of cellular activities
CU648_RS17815	SM00155	Phospholipase D. Active site motifs.
CU648_RS17830	SM00052	Putative diguanylate phosphodiesterase
CU648_RS17830	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CU648_RS17830	SM00091	PAS domain
CU648_RS17830	SM00267	diguanylate cyclase
CU648_RS17840	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS17840	SM00866	CU648_RS17840
CU648_RS17850	SM00642	Alpha-amylase domain
CU648_RS17885	SM00382	ATPases associated with a variety of cellular activities
CU648_RS17890	SM00062	Bacterial periplasmic substrate-binding proteins
CU648_RS17890	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CU648_RS17940	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS17940	SM00387	Histidine kinase-like ATPases
CU648_RS17940	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS17945	SM00448	cheY-homologous receiver domain
CU648_RS17945	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS17985	SM00382	ATPases associated with a variety of cellular activities
CU648_RS17990	SM00382	ATPases associated with a variety of cellular activities
CU648_RS18000	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS18010	SM00354	helix_turn _helix lactose operon repressor
CU648_RS18025	SM00382	ATPases associated with a variety of cellular activities
CU648_RS18060	SM00829	Enoylreductase
CU648_RS18070	SM00770	Zinc dependent phospholipase C (alpha toxin)
CU648_RS18105	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS18115	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS18160	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS18260	SM00899	CU648_RS18260
CU648_RS18405	SM00116	Domain in cystathionine beta-synthase and other proteins.
CU648_RS18425	SM00287	Bacterial SH3 domain homologues
CU648_RS18435	SM00382	ATPases associated with a variety of cellular activities
CU648_RS18530	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS18555	SM00382	ATPases associated with a variety of cellular activities
CU648_RS18570	SM00382	ATPases associated with a variety of cellular activities
CU648_RS18655	SM00450	Rhodanese Homology Domain
CU648_RS18665	SM00450	Rhodanese Homology Domain
CU648_RS18670	SM00450	Rhodanese Homology Domain
CU648_RS18670	SM00849	Metallo-beta-lactamase superfamily
CU648_RS18685	SM00450	Rhodanese Homology Domain
CU648_RS18690	SM00450	Rhodanese Homology Domain
CU648_RS18715	SM00829	Enoylreductase
CU648_RS18765	SM00567	E-Z type HEAT repeats
CU648_RS18770	SM00287	Bacterial SH3 domain homologues
CU648_RS18780	SM00382	ATPases associated with a variety of cellular activities
CU648_RS18840	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
CU648_RS18940	SM00344	helix_turn_helix ASNC type
CU648_RS18990	SM01060	CU648_RS18990
CU648_RS19035	SM00382	ATPases associated with a variety of cellular activities
CU648_RS19040	SM00382	ATPases associated with a variety of cellular activities
CU648_RS19050	SM00062	Bacterial periplasmic substrate-binding proteins
CU648_RS19050	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CU648_RS19060	SM00382	ATPases associated with a variety of cellular activities
CU648_RS19105	SM00421	helix_turn_helix, Lux Regulon
CU648_RS19105	SM00448	cheY-homologous receiver domain
CU648_RS19175	SM00644	CU648_RS19175
CU648_RS19185	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS19225	SM00957	SecA DEAD-like domain
CU648_RS19225	SM00958	SecA preprotein cross-linking domain
CU648_RS19290	SM00646	CU648_RS19290
CU648_RS19315	SM00382	ATPases associated with a variety of cellular activities
CU648_RS19350	SM00382	ATPases associated with a variety of cellular activities
CU648_RS19355	SM00382	ATPases associated with a variety of cellular activities
CU648_RS19370	SM00091	PAS domain
CU648_RS19370	SM00387	Histidine kinase-like ATPases
CU648_RS19375	SM00448	cheY-homologous receiver domain
CU648_RS19470	SM00422	helix_turn_helix, mercury resistance
CU648_RS19580	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS19635	SM01120	CU648_RS19635
CU648_RS19680	SM00028	Tetratricopeptide repeats
CU648_RS19695	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU648_RS19775	SM00460	Transglutaminase/protease-like homologues
CU648_RS19795	SM00382	ATPases associated with a variety of cellular activities
CU648_RS19870	SM00331	Sigma factor PP2C-like phosphatases
CU648_RS19870	SM00448	cheY-homologous receiver domain
CU648_RS19875	SM00138	Methyltransferase, chemotaxis proteins 
CU648_RS19880	SM00387	Histidine kinase-like ATPases
CU648_RS19880	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS19880	SM00448	cheY-homologous receiver domain
CU648_RS19920	SM00829	Enoylreductase
CU648_RS19950	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU648_RS19985	SM00028	Tetratricopeptide repeats
CU648_RS20020	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS20075	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS20125	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS20145	SM00382	ATPases associated with a variety of cellular activities
CU648_RS20255	SM00422	helix_turn_helix, mercury resistance
CU648_RS20355	SM00354	helix_turn _helix lactose operon repressor
CU648_RS20365	SM00849	Metallo-beta-lactamase superfamily
CU648_RS20390	SM00725	NEAr Transporter domain
CU648_RS20400	SM00860	SMI1 / KNR4 family
CU648_RS20425	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU648_RS20430	SM00382	ATPases associated with a variety of cellular activities
CU648_RS20445	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS20470	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS20470	SM00871	Bacterial transcription activator, effector binding domain
CU648_RS20485	SM00387	Histidine kinase-like ATPases
CU648_RS20485	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS20490	SM00448	cheY-homologous receiver domain
CU648_RS20490	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS20555	SM00357	Cold shock protein domain
CU648_RS20670	SM01060	CU648_RS20670
CU648_RS20680	SM00642	Alpha-amylase domain
CU648_RS20685	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS20695	SM00316	Ribosomal protein S1-like RNA-binding domain
CU648_RS20740	SM00382	ATPases associated with a variety of cellular activities
CU648_RS20740	SM01086	C-terminal, D2-small domain, of ClpB protein
CU648_RS20775	SM00825	Beta-ketoacyl synthase
CU648_RS20825	SM00382	ATPases associated with a variety of cellular activities
CU648_RS20830	SM00382	ATPases associated with a variety of cellular activities
CU648_RS20880	SM00155	Phospholipase D. Active site motifs.
CU648_RS20910	SM01118	CU648_RS20910
CU648_RS20920	SM00954	Region found in RelA / SpoT proteins
CU648_RS21075	SM00635	Bacterial Ig-like domain 2
CU648_RS21200	SM00861	Transketolase, pyrimidine binding domain
CU648_RS21205	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS21335	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS21355	SM00382	ATPases associated with a variety of cellular activities
CU648_RS21375	SM00014	Acid phosphatase homologues
CU648_RS21425	SM00448	cheY-homologous receiver domain
CU648_RS21425	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS21430	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS21430	SM00387	Histidine kinase-like ATPases
CU648_RS21430	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS21435	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS21435	SM00895	CU648_RS21435
CU648_RS21505	SM00822	CU648_RS21505
CU648_RS21545	SM00382	ATPases associated with a variety of cellular activities
CU648_RS21570	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU648_RS21570	SM01134	CU648_RS21570
CU648_RS21585	SM01007	Class II Aldolase and Adducin N-terminal domain
CU648_RS21605	SM00387	Histidine kinase-like ATPases
CU648_RS21605	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS21610	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS21630	SM00387	Histidine kinase-like ATPases
CU648_RS21630	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS21700	SM00507	HNH nucleases
CU648_RS21715	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS21720	SM00382	ATPases associated with a variety of cellular activities
CU648_RS21730	SM00382	ATPases associated with a variety of cellular activities
CU648_RS21750	SM00344	helix_turn_helix ASNC type
CU648_RS21875	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS21950	SM00917	LeuA allosteric (dimerisation) domain
CU648_RS21955	SM01329	CU648_RS21955
CU648_RS22140	SM00387	Histidine kinase-like ATPases
CU648_RS22145	SM00421	helix_turn_helix, Lux Regulon
CU648_RS22145	SM00448	cheY-homologous receiver domain
CU648_RS22240	SM00091	PAS domain
CU648_RS22240	SM00387	Histidine kinase-like ATPases
CU648_RS22240	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS22260	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS22260	SM00387	Histidine kinase-like ATPases
CU648_RS22260	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS22310	SM00363	S4 RNA-binding domain
CU648_RS22330	SM00448	cheY-homologous receiver domain
CU648_RS22330	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS22335	SM00091	PAS domain
CU648_RS22335	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS22335	SM00387	Histidine kinase-like ATPases
CU648_RS22335	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS22345	SM00257	Lysin motif
CU648_RS22370	SM00487	DEAD-like helicases superfamily
CU648_RS22370	SM00490	helicase superfamily c-terminal domain
CU648_RS22380	SM00257	Lysin motif
CU648_RS22390	SM00422	helix_turn_helix, mercury resistance
CU648_RS22400	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CU648_RS22415	SM00644	CU648_RS22415
CU648_RS22425	SM00870	CU648_RS22425
CU648_RS22440	SM00316	Ribosomal protein S1-like RNA-binding domain
CU648_RS22445	SM01240	CU648_RS22445
CU648_RS22500	SM00411	bacterial (prokaryotic) histone like domain
CU648_RS22525	SM00562	CU648_RS22525
CU648_RS22545	SM00028	Tetratricopeptide repeats
CU648_RS22550	SM00914	CU648_RS22550
CU648_RS22600	SM00986	Uracil DNA glycosylase superfamily
CU648_RS22600	SM00987	UreE urease accessory protein, C-terminal domain 
CU648_RS22625	SM00851	MGS-like domain
CU648_RS22675	SM00479	CU648_RS22675
CU648_RS22675	SM00491	CU648_RS22675
CU648_RS22700	SM00478	endonuclease III
CU648_RS22700	SM00525	CU648_RS22700
CU648_RS22710	SM00060	Fibronectin type 3 domain
CU648_RS22770	SM00981	CU648_RS22770
CU648_RS22780	SM00491	CU648_RS22780
CU648_RS22845	SM00450	Rhodanese Homology Domain
CU648_RS22895	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CU648_RS22895	SM00475	5'-3' exonuclease
CU648_RS22960	SM00357	Cold shock protein domain
CU648_RS23015	SM00849	Metallo-beta-lactamase superfamily
CU648_RS23065	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS23090	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS23100	SM00226	Low molecular weight phosphatase family
CU648_RS23110	SM00382	ATPases associated with a variety of cellular activities
CU648_RS23125	SM00422	helix_turn_helix, mercury resistance
CU648_RS23125	SM00871	Bacterial transcription activator, effector binding domain
CU648_RS23215	SM00448	cheY-homologous receiver domain
CU648_RS23220	SM00073	Histidine Phosphotransfer domain
CU648_RS23220	SM00260	Two component signalling adaptor domain
CU648_RS23220	SM00387	Histidine kinase-like ATPases
CU648_RS23220	SM01231	CU648_RS23220
CU648_RS23240	SM00138	Methyltransferase, chemotaxis proteins 
CU648_RS23315	SM00382	ATPases associated with a variety of cellular activities
CU648_RS23350	SM00260	Two component signalling adaptor domain
CU648_RS23350	SM00448	cheY-homologous receiver domain
CU648_RS23420	SM00382	ATPases associated with a variety of cellular activities
CU648_RS23420	SM00962	SRP54-type protein, GTPase domain
CU648_RS23430	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CU648_RS23495	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS23515	SM00382	ATPases associated with a variety of cellular activities
CU648_RS23530	SM00849	Metallo-beta-lactamase superfamily
CU648_RS23530	SM01027	Beta-Casp domain
CU648_RS23555	SM00835	Cupin
CU648_RS23565	SM00855	Phosphoglycerate mutase family
CU648_RS23580	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS23620	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS23620	SM00895	CU648_RS23620
CU648_RS23630	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CU648_RS23675	SM00849	Metallo-beta-lactamase superfamily
CU648_RS23730	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS23775	SM00421	helix_turn_helix, Lux Regulon
CU648_RS23775	SM00448	cheY-homologous receiver domain
CU648_RS23785	SM00382	ATPases associated with a variety of cellular activities
CU648_RS23800	SM00155	Phospholipase D. Active site motifs.
CU648_RS23820	SM00919	Malic enzyme, NAD binding domain
CU648_RS23820	SM01274	CU648_RS23820
CU648_RS23825	SM00387	Histidine kinase-like ATPases
CU648_RS23830	SM00448	cheY-homologous receiver domain
CU648_RS23835	SM00487	DEAD-like helicases superfamily
CU648_RS23835	SM00490	helicase superfamily c-terminal domain
CU648_RS23860	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS23900	SM00646	CU648_RS23900
CU648_RS23905	SM00047	Lysozyme subfamily 2
CU648_RS24050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS24050	SM00387	Histidine kinase-like ATPases
CU648_RS24050	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS24055	SM00448	cheY-homologous receiver domain
CU648_RS24055	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS24100	SM00854	Bacterial capsule synthesis protein PGA_cap
CU648_RS24130	SM00850	LytTr DNA-binding domain
CU648_RS24160	SM00860	SMI1 / KNR4 family
CU648_RS24215	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS24225	SM00448	cheY-homologous receiver domain
CU648_RS24225	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS24230	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS24230	SM00387	Histidine kinase-like ATPases
CU648_RS24230	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS24245	SM00450	Rhodanese Homology Domain
CU648_RS24315	SM01133	CU648_RS24315
CU648_RS24325	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CU648_RS24360	SM01011	Aminopeptidase P, N-terminal domain
CU648_RS24370	SM00287	Bacterial SH3 domain homologues
CU648_RS24380	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CU648_RS24380	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CU648_RS24380	SM00493	CU648_RS24380
CU648_RS24495	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CU648_RS24535	SM00382	ATPases associated with a variety of cellular activities
CU648_RS24540	SM00382	ATPases associated with a variety of cellular activities
CU648_RS24575	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS24595	SM00382	ATPases associated with a variety of cellular activities
CU648_RS24600	SM00382	ATPases associated with a variety of cellular activities
CU648_RS24635	SM00287	Bacterial SH3 domain homologues
CU648_RS24645	SM00382	ATPases associated with a variety of cellular activities
CU648_RS24650	SM00448	cheY-homologous receiver domain
CU648_RS24650	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS24655	SM00387	Histidine kinase-like ATPases
CU648_RS24655	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS24740	SM00448	cheY-homologous receiver domain
CU648_RS24740	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS24745	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS24745	SM00387	Histidine kinase-like ATPases
CU648_RS24745	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS24840	SM00460	Transglutaminase/protease-like homologues
CU648_RS24865	SM00966	SpoVT / AbrB like domain 
CU648_RS24875	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS24910	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU648_RS24910	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS24975	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CU648_RS25040	SM00855	Phosphoglycerate mutase family
CU648_RS25095	SM00155	Phospholipase D. Active site motifs.
CU648_RS25120	SM01091	Transporter associated domain
CU648_RS25195	SM00244	prohibitin homologues
CU648_RS25200	SM00855	Phosphoglycerate mutase family
CU648_RS25215	SM01005	Alanine racemase, C-terminal domain
CU648_RS25245	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS25350	SM00487	DEAD-like helicases superfamily
CU648_RS25350	SM00490	helicase superfamily c-terminal domain
CU648_RS25370	SM00829	Enoylreductase
CU648_RS25400	SM00849	Metallo-beta-lactamase superfamily
CU648_RS25415	SM00460	Transglutaminase/protease-like homologues
CU648_RS25440	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU648_RS25460	SM00100	Cyclic nucleotide-monophosphate binding domain
CU648_RS25460	SM00419	helix_turn_helix, cAMP Regulatory protein
CU648_RS25465	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU648_RS25475	SM00852	Probable molybdopterin binding domain
CU648_RS25580	SM00860	SMI1 / KNR4 family
CU648_RS25595	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU648_RS25600	SM00382	ATPases associated with a variety of cellular activities
CU648_RS25620	SM00567	E-Z type HEAT repeats
CU648_RS25620	SM00932	Scaffold protein Nfu/NifU N terminal
CU648_RS25640	SM00836	DALR anticodon binding domain
CU648_RS25640	SM01016	Arginyl tRNA synthetase N terminal dom
CU648_RS25650	SM00028	Tetratricopeptide repeats
CU648_RS25690	SM00327	von Willebrand factor (vWF) type A domain
CU648_RS25705	SM00382	ATPases associated with a variety of cellular activities
CU648_RS25715	SM00028	Tetratricopeptide repeats
CU648_RS25770	SM00448	cheY-homologous receiver domain
CU648_RS25770	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS25775	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU648_RS25775	SM00387	Histidine kinase-like ATPases
CU648_RS25775	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS25850	SM00382	ATPases associated with a variety of cellular activities
CU648_RS25915	SM00563	Phosphate acyltransferases
CU648_RS25985	SM00014	Acid phosphatase homologues
CU648_RS26035	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CU648_RS26040	SM00421	helix_turn_helix, Lux Regulon
CU648_RS26040	SM00448	cheY-homologous receiver domain
CU648_RS26050	SM00829	Enoylreductase
CU648_RS26110	SM00382	ATPases associated with a variety of cellular activities
CU648_RS26150	SM01091	Transporter associated domain
CU648_RS26165	SM00387	Histidine kinase-like ATPases
CU648_RS26165	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS26185	SM00882	Coenzyme A transferase
CU648_RS26190	SM00882	Coenzyme A transferase
CU648_RS26205	SM00382	ATPases associated with a variety of cellular activities
CU648_RS26250	SM00219	Tyrosine kinase, catalytic domain
CU648_RS26260	SM00014	Acid phosphatase homologues
CU648_RS26320	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
CU648_RS26485	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS26535	SM00823	Phosphopantetheine attachment site
CU648_RS26535	SM00824	Thioesterase
CU648_RS26540	SM00923	MbtH-like protein
CU648_RS26560	SM00411	bacterial (prokaryotic) histone like domain
CU648_RS26600	SM00363	S4 RNA-binding domain
CU648_RS26605	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CU648_RS26610	SM00382	ATPases associated with a variety of cellular activities
CU648_RS26685	SM00849	Metallo-beta-lactamase superfamily
CU648_RS26705	SM01059	Chloramphenicol acetyltransferase
CU648_RS26730	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS26750	SM00849	Metallo-beta-lactamase superfamily
CU648_RS26765	SM00857	Resolvase, N terminal domain
CU648_RS26780	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU648_RS26790	SM00226	Low molecular weight phosphatase family
CU648_RS26800	SM00382	ATPases associated with a variety of cellular activities
CU648_RS26840	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS26880	SM00357	Cold shock protein domain
CU648_RS26910	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CU648_RS26945	SM00382	ATPases associated with a variety of cellular activities
CU648_RS26950	SM00382	ATPases associated with a variety of cellular activities
CU648_RS26960	SM00646	CU648_RS26960
CU648_RS26970	SM00530	Helix-turn-helix XRE-family like proteins 
CU648_RS26995	SM00835	Cupin
CU648_RS27000	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU648_RS27080	SM01207	CU648_RS27080
CU648_RS27150	SM00849	Metallo-beta-lactamase superfamily
CU648_RS27165	SM00487	DEAD-like helicases superfamily
CU648_RS27165	SM00490	helicase superfamily c-terminal domain
CU648_RS27195	SM00382	ATPases associated with a variety of cellular activities
CU648_RS27215	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU648_RS27220	SM00855	Phosphoglycerate mutase family
CU648_RS27330	SM00878	Biotin carboxylase C-terminal domain
CU648_RS27385	SM00387	Histidine kinase-like ATPases
CU648_RS27385	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS27390	SM00448	cheY-homologous receiver domain
CU648_RS27390	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS27445	SM00382	ATPases associated with a variety of cellular activities
CU648_RS27465	SM00422	helix_turn_helix, mercury resistance
CU648_RS27465	SM00871	Bacterial transcription activator, effector binding domain
CU648_RS27495	SM00342	helix_turn_helix, arabinose operon control protein
CU648_RS27510	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS27580	SM00448	cheY-homologous receiver domain
CU648_RS27580	SM00862	Transcriptional regulatory protein, C terminal
CU648_RS27585	SM00387	Histidine kinase-like ATPases
CU648_RS27595	SM00382	ATPases associated with a variety of cellular activities
CU648_RS27605	SM00382	ATPases associated with a variety of cellular activities
CU648_RS27635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS27640	SM01209	CU648_RS27640
CU648_RS27815	SM00091	PAS domain
CU648_RS27815	SM00387	Histidine kinase-like ATPases
CU648_RS27815	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS27840	SM00382	ATPases associated with a variety of cellular activities
CU648_RS27855	SM00387	Histidine kinase-like ATPases
CU648_RS27855	SM00388	His Kinase A (phosphoacceptor) domain
CU648_RS27870	SM00829	Enoylreductase
CU648_RS27875	SM00014	Acid phosphatase homologues
CU648_RS27880	SM00740	CU648_RS27880
CU648_RS27955	SM00422	helix_turn_helix, mercury resistance
CU648_RS28000	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU648_RS28045	SM00480	DNA polymerase III beta subunit
CU648_RS28140	SM00465	GIY-YIG type nucleases (URI domain)
CU648_RS28225	SM00014	Acid phosphatase homologues
CU648_RS28235	SM00642	Alpha-amylase domain
CU648_RS28255	SM00871	Bacterial transcription activator, effector binding domain
