locus-tag	class	description
JI729_RS00010	COG0592	DNA-directed DNA polymerase activity
JI729_RS00015	COG2501	S4 domain
JI729_RS00025	COG0187	DNA topoisomerase II activity
JI729_RS00030	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JI729_RS00065	COG0516	GMP reductase activity
JI729_RS00065	COG0517	IMP dehydrogenase activity
JI729_RS00070	COG1686	Belongs to the peptidase S11 family
JI729_RS00100	COG1428	Deoxynucleoside kinase
JI729_RS00105	COG1428	Deoxynucleoside kinase
JI729_RS00110	COG1335	isochorismatase
JI729_RS00115	COG0590	tRNA wobble adenosine to inosine editing
JI729_RS00125	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JI729_RS00180	COG1982	Orn Lys Arg decarboxylase major
JI729_RS00190	COG0470	DNA polymerase III
JI729_RS00195	COG1774	PSP1 C-terminal conserved region
JI729_RS00205	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JI729_RS00215	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JI729_RS00220	COG2002	toxin-antitoxin pair type II binding
JI729_RS00230	COG0084	hydrolase, TatD family'
JI729_RS00250	COG4466	Protein conserved in bacteria
JI729_RS00265	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JI729_RS00270	COG0251	oxidation-reduction process
JI729_RS00300	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JI729_RS00305	COG2002	toxin-antitoxin pair type II binding
JI729_RS00310	COG2244	polysaccharide biosynthetic process
JI729_RS00315	COG3956	TIGRFAM MazG family protein
JI729_RS00320	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JI729_RS00340	COG1098	S1 RNA binding domain
JI729_RS00355	COG2208	phosphoserine phosphatase activity
JI729_RS00365	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JI729_RS00370	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JI729_RS00385	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JI729_RS00390	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JI729_RS00395	COG0512	Glutamine amidotransferase of anthranilate synthase
JI729_RS00400	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JI729_RS00405	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JI729_RS00410	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JI729_RS00415	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JI729_RS00420	COG1396	sequence-specific DNA binding
JI729_RS00425	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JI729_RS00460	COG0802	atpase or kinase
JI729_RS00465	COG1214	PFAM Peptidase M22, glycoprotease
JI729_RS00470	COG0456	acetyltransferase
JI729_RS00480	COG0488	(ABC) transporter
JI729_RS00495	COG1266	CAAX protease self-immunity
JI729_RS00515	COG2252	PERMEase
JI729_RS00525	COG5002	protein histidine kinase activity
JI729_RS00550	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JI729_RS00590	COG2205	protein histidine kinase activity
JI729_RS00595	COG0745	RESPONSE REGULATOR receiver
JI729_RS00630	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JI729_RS00640	COG1216	Glycosyl transferase, family 2
JI729_RS00640	COG0463	Glycosyl transferase, family 2
JI729_RS00660	COG0697	spore germination
JI729_RS00685	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JI729_RS00690	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JI729_RS00695	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JI729_RS00705	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JI729_RS00710	COG0047	phosphoribosylformylglycinamidine synthase activity
JI729_RS00720	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JI729_RS00730	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JI729_RS00740	COG0151	Belongs to the GarS family
JI729_RS00765	COG0210	DNA helicase
JI729_RS00775	COG4851	CamS sex pheromone cAM373 precursor
JI729_RS00790	COG1335	isochorismatase
JI729_RS00800	COG2011	ABC-type metal ion transport system permease component
JI729_RS00820	COG0003	Pfam Anion-transporting ATPase
JI729_RS00825	COG1846	Transcriptional regulator
JI729_RS00830	COG4682	membrane
JI729_RS00850	COG1597	lipid kinase activity
JI729_RS00860	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JI729_RS00870	COG1012	belongs to the aldehyde dehydrogenase family
JI729_RS00875	COG2076	Multidrug Resistance protein
JI729_RS00885	COG2309	aminopeptidase activity
JI729_RS00900	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JI729_RS00910	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JI729_RS00915	COG4807	Protein conserved in bacteria
JI729_RS00940	COG1757	Na H antiporter
JI729_RS00945	COG1473	amidohydrolase
JI729_RS00960	COG0450	alkyl hydroperoxide reductase
JI729_RS00980	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JI729_RS00985	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JI729_RS00990	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JI729_RS00995	COG0492	ferredoxin-NADP+ reductase activity
JI729_RS01005	COG0166	Belongs to the GPI family
JI729_RS01030	COG5002	protein histidine kinase activity
JI729_RS01050	COG3541	Predicted nucleotidyltransferase
JI729_RS01055	COG2814	Major facilitator Superfamily
JI729_RS01060	COG0723	plastoquinol--plastocyanin reductase activity
JI729_RS01060	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JI729_RS01070	COG0765	amino acid transport
JI729_RS01075	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JI729_RS01085	COG0840	transmembrane signaling receptor activity
JI729_RS01110	COG0549	Belongs to the carbamate kinase family
JI729_RS01115	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JI729_RS01130	COG0366	Alpha amylase catalytic
JI729_RS01135	COG1263	PTS System
JI729_RS01135	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JI729_RS01135	COG2190	(PTS) system
JI729_RS01165	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JI729_RS01185	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JI729_RS01190	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JI729_RS01195	COG1116	anion transmembrane transporter activity
JI729_RS01245	COG2270	Major facilitator Superfamily
JI729_RS01275	COG2310	stress, protein
JI729_RS01280	COG2310	stress, protein
JI729_RS01285	COG2310	stress, protein
JI729_RS01290	COG0861	Integral membrane protein TerC family
JI729_RS01300	COG3853	Toxic anion resistance protein (TelA)
JI729_RS01315	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JI729_RS01325	COG1295	ribonuclease BN
JI729_RS01330	COG2217	Heavy metal translocating P-type atpase
JI729_RS01335	COG0697	spore germination
JI729_RS01355	COG0586	Pfam SNARE associated Golgi protein
JI729_RS01370	COG3871	stress protein (general stress protein 26)
JI729_RS01375	COG0387	Pfam Sodium calcium exchanger
JI729_RS01385	COG0535	radical SAM domain protein
JI729_RS01405	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JI729_RS01410	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JI729_RS01425	COG3829	transcription factor binding
JI729_RS01435	COG0833	amino acid
JI729_RS01440	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JI729_RS01470	COG1263	PTS System
JI729_RS01470	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JI729_RS01475	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JI729_RS01490	COG0463	Glycosyl transferase, family 2
JI729_RS01500	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JI729_RS01500	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JI729_RS01520	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JI729_RS01540	COG1228	amidohydrolase
JI729_RS01545	COG1090	epimerase
JI729_RS01575	COG1988	membrane-bound metal-dependent
JI729_RS01580	COG1194	a g-specific adenine glycosylase
JI729_RS01605	COG1132	(ABC) transporter
JI729_RS01610	COG4129	membrane
JI729_RS01615	COG0069	glutamate synthase activity
JI729_RS01615	COG0070	glutamate synthase
JI729_RS01615	COG0067	glutamate synthase
JI729_RS01625	COG4555	ABC transporter
JI729_RS01645	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JI729_RS01650	COG0735	belongs to the Fur family
JI729_RS01770	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JI729_RS01795	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JI729_RS01805	COG2766	serine protein kinase
JI729_RS01825	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JI729_RS01835	COG1585	Membrane protein implicated in regulation of membrane protease activity
JI729_RS01840	COG2268	Band 7 protein
JI729_RS01850	COG3290	protein histidine kinase activity
JI729_RS01855	COG4565	transcriptional regulatory protein
JI729_RS01860	COG2851	Citrate transporter
JI729_RS01885	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JI729_RS01890	COG3842	ATPase activity
JI729_RS01895	COG1175	transmembrane transport
JI729_RS01900	COG0395	ABC-type sugar transport system, permease component
JI729_RS01910	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JI729_RS01915	COG0745	RESPONSE REGULATOR receiver
JI729_RS01920	COG5002	protein histidine kinase activity
JI729_RS01930	COG4990	cell redox homeostasis
JI729_RS01940	COG3290	protein histidine kinase activity
JI729_RS01945	COG4565	transcriptional regulatory protein
JI729_RS01950	COG3493	citrate carrier protein
JI729_RS01955	COG0281	malic enzyme
JI729_RS01965	COG0697	spore germination
JI729_RS01970	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JI729_RS01980	COG5002	protein histidine kinase activity
JI729_RS01985	COG0745	RESPONSE REGULATOR receiver
JI729_RS01995	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JI729_RS02000	COG3383	formate dehydrogenase (NAD+) activity
JI729_RS02005	COG2427	Protein of unknown function (DUF1641)
JI729_RS02020	COG0531	amino acid
JI729_RS02030	COG0640	Transcriptional regulator
JI729_RS02035	COG2217	Heavy metal translocating P-type atpase
JI729_RS02040	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JI729_RS02055	COG3227	Zinc metalloprotease (Elastase)
JI729_RS02075	COG2720	vancomycin resistance protein
JI729_RS02080	COG1316	TRANSCRIPTIONal
JI729_RS02085	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JI729_RS02090	COG0346	lactoylglutathione lyase activity
JI729_RS02095	COG1253	flavin adenine dinucleotide binding
JI729_RS02100	COG1027	Aspartate ammonia-lyase
JI729_RS02105	COG1620	l-lactate permease
JI729_RS02120	COG3104	oligopeptide transport
JI729_RS02125	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JI729_RS02130	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JI729_RS02135	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JI729_RS02145	COG2226	methyltransferase
JI729_RS02155	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JI729_RS02165	COG4548	von Willebrand factor, type A
JI729_RS02170	COG0714	Associated with various cellular activities
JI729_RS02190	COG0531	amino acid
JI729_RS02195	COG2188	Transcriptional regulator
JI729_RS02200	COG1263	PTS System
JI729_RS02200	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JI729_RS02205	COG0366	Alpha amylase catalytic
JI729_RS02220	COG0697	spore germination
JI729_RS02225	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JI729_RS02230	COG1115	amino acid carrier protein
JI729_RS02235	COG1126	abc transporter atp-binding protein
JI729_RS02240	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JI729_RS02245	COG0765	amino acid transport
JI729_RS02250	COG0765	amino acid transport
JI729_RS02255	COG0833	amino acid
JI729_RS02270	COG1595	DNA-templated transcription, initiation
JI729_RS02280	COG2378	regulation of single-species biofilm formation
JI729_RS02285	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JI729_RS02290	COG5002	protein histidine kinase activity
JI729_RS02305	COG0659	secondary active sulfate transmembrane transporter activity
JI729_RS02320	COG2271	Major facilitator Superfamily
JI729_RS02325	COG1846	Transcriptional regulator
JI729_RS02330	COG0477	Major facilitator Superfamily
JI729_RS02335	COG1609	Transcriptional regulator
JI729_RS02340	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JI729_RS02355	COG1172	Belongs to the binding-protein-dependent transport system permease family
JI729_RS02360	COG1879	ABC-type sugar transport system periplasmic component
JI729_RS02390	COG1063	alcohol dehydrogenase
JI729_RS02440	COG0840	transmembrane signaling receptor activity
JI729_RS02445	COG1388	LysM domain
JI729_RS02445	COG3584	3D domain protein
JI729_RS02450	COG1476	TRANSCRIPTIONal
JI729_RS02470	COG3104	oligopeptide transport
JI729_RS02475	COG1114	Component of the transport system for branched-chain amino acids
JI729_RS02490	COG1113	amino acid transport
JI729_RS02495	COG2252	PERMEase
JI729_RS02510	COG2153	protein acetylation
JI729_RS02520	COG0475	glutathione-regulated potassium exporter activity
JI729_RS02520	COG0569	domain protein
JI729_RS02535	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JI729_RS02545	COG0833	amino acid
JI729_RS02550	COG4990	cell redox homeostasis
JI729_RS02565	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JI729_RS02570	COG0697	spore germination
JI729_RS02575	COG0531	amino acid
JI729_RS02590	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JI729_RS02595	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JI729_RS02600	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JI729_RS02600	COG1918	ferrous iron import across plasma membrane
JI729_RS02605	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JI729_RS02610	COG0573	inorganic phosphate transmembrane transporter activity
JI729_RS02615	COG0581	inorganic phosphate transmembrane transporter activity
JI729_RS02620	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JI729_RS02740	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
JI729_RS02760	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JI729_RS02765	COG1116	anion transmembrane transporter activity
JI729_RS02770	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JI729_RS02775	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JI729_RS02780	COG0352	thiamine-phosphate diphosphorylase activity
JI729_RS02785	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JI729_RS02790	COG2104	thiamine diphosphate biosynthetic process
JI729_RS02800	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JI729_RS02805	COG0351	phosphomethylpyrimidine kinase
JI729_RS02845	COG2205	protein histidine kinase activity
JI729_RS02850	COG2814	Major facilitator Superfamily
JI729_RS02855	COG1846	Transcriptional regulator
JI729_RS02880	COG1136	(ABC) transporter
JI729_RS02890	COG2252	PERMEase
JI729_RS02895	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS02910	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JI729_RS02915	COG1621	beta-fructofuranosidase activity
JI729_RS02920	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JI729_RS02920	COG1263	PTS System
JI729_RS02925	COG1609	Transcriptional regulator
JI729_RS02975	COG0778	Nitroreductase
JI729_RS02980	COG2719	SpoVR family
JI729_RS02990	COG3591	Belongs to the peptidase S1B family
JI729_RS03000	COG0446	pyridine nucleotide-disulphide oxidoreductase
JI729_RS03005	COG1937	Protein conserved in bacteria
JI729_RS03010	COG0425	Belongs to the sulfur carrier protein TusA family
JI729_RS03010	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JI729_RS03015	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS03015	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JI729_RS03020	COG0425	Belongs to the sulfur carrier protein TusA family
JI729_RS03025	COG0425	Belongs to the sulfur carrier protein TusA family
JI729_RS03035	COG0425	Belongs to the sulfur carrier protein TusA family
JI729_RS03035	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JI729_RS03045	COG2210	Belongs to the sulfur carrier protein TusA family
JI729_RS03050	COG0730	response to heat
JI729_RS03060	COG1316	TRANSCRIPTIONal
JI729_RS03065	COG0604	alcohol dehydrogenase
JI729_RS03070	COG1283	sodium-dependent phosphate transmembrane transporter activity
JI729_RS03085	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JI729_RS03085	COG3711	transcriptional antiterminator
JI729_RS03090	COG1447	Phosphotransferase system cellobiose-specific component IIA
JI729_RS03095	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JI729_RS03120	COG1388	LysM domain
JI729_RS03120	COG3584	3D domain protein
JI729_RS03125	COG0577	efflux transmembrane transporter activity
JI729_RS03130	COG1136	(ABC) transporter
JI729_RS03140	COG5522	Integral membrane protein (intg_mem_TP0381)
JI729_RS03155	COG1114	Component of the transport system for branched-chain amino acids
JI729_RS03160	COG3546	catalase activity
JI729_RS03195	COG0586	Pfam SNARE associated Golgi protein
JI729_RS03230	COG0531	amino acid
JI729_RS03235	COG0475	glutathione-regulated potassium exporter activity
JI729_RS03245	COG1737	Transcriptional regulator
JI729_RS03255	COG1263	PTS System
JI729_RS03255	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JI729_RS03265	COG2259	Doxx family
JI729_RS03285	COG1522	sequence-specific DNA binding
JI729_RS03290	COG0165	Argininosuccinate lyase
JI729_RS03290	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JI729_RS03295	COG0300	oxidoreductase activity
JI729_RS03315	COG1309	transcriptional regulator
JI729_RS03320	COG2814	Major facilitator Superfamily
JI729_RS03325	COG1733	regulation of RNA biosynthetic process
JI729_RS03350	COG0693	protein deglycase activity
JI729_RS03355	COG0753	catalase activity
JI729_RS03365	COG0531	amino acid
JI729_RS03380	COG1012	belongs to the aldehyde dehydrogenase family
JI729_RS03385	COG1132	(ABC) transporter
JI729_RS03390	COG1132	(ABC) transporter
JI729_RS03395	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JI729_RS03400	COG0765	amino acid transport
JI729_RS03405	COG1126	abc transporter atp-binding protein
JI729_RS03420	COG0189	ligase activity
JI729_RS03445	COG4585	Histidine kinase
JI729_RS03450	COG2197	response regulator
JI729_RS03495	COG0028	Belongs to the TPP enzyme family
JI729_RS03500	COG3527	Alpha-acetolactate decarboxylase
JI729_RS03510	COG0561	phosphatase activity
JI729_RS03520	COG3409	Peptidoglycan-binding domain 1 protein
JI729_RS03520	COG5632	N-Acetylmuramoyl-L-alanine amidase
JI729_RS03525	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JI729_RS03530	COG0318	PFAM AMP-dependent synthetase and ligase
JI729_RS03545	COG0659	secondary active sulfate transmembrane transporter activity
JI729_RS03550	COG2244	polysaccharide biosynthetic process
JI729_RS03570	COG1024	Enoyl-CoA hydratase
JI729_RS03590	COG1363	Peptidase, m42
JI729_RS03630	COG0601	transmembrane transport
JI729_RS03635	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JI729_RS03640	COG0444	Belongs to the ABC transporter superfamily
JI729_RS03645	COG4608	Belongs to the ABC transporter superfamily
JI729_RS03670	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS03685	COG1136	(ABC) transporter
JI729_RS03685	COG0577	efflux transmembrane transporter activity
JI729_RS03865	COG0477	Major facilitator Superfamily
JI729_RS03870	COG3290	protein histidine kinase activity
JI729_RS03875	COG4565	transcriptional regulatory protein
JI729_RS03880	COG3181	Tripartite tricarboxylate transporter family receptor
JI729_RS03940	COG0305	Participates in initiation and elongation during chromosome replication
JI729_RS03970	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JI729_RS03975	COG1288	antiporter activity
JI729_RS03990	COG0477	Major facilitator Superfamily
JI729_RS04010	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS04120	COG1073	alpha beta
JI729_RS04140	COG2169	Transcriptional regulator
JI729_RS04185	COG1183	phosphatidylcholine synthase activity
JI729_RS04205	COG2376	Dihydroxyacetone kinase
JI729_RS04215	COG2376	Dihydroxyacetone kinase
JI729_RS04245	COG2373	Large extracellular alpha-helical protein
JI729_RS04325	COG1191	sigma factor activity
JI729_RS04335	COG2208	phosphoserine phosphatase activity
JI729_RS04340	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JI729_RS04395	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JI729_RS04415	COG0420	3'-5' exonuclease activity
JI729_RS04420	COG4717	serine-type aminopeptidase activity
JI729_RS04430	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JI729_RS04445	COG0346	lactoylglutathione lyase activity
JI729_RS04450	COG0346	lactoylglutathione lyase activity
JI729_RS04455	COG0457	Tetratricopeptide repeat
JI729_RS04465	COG2267	carboxylic ester hydrolase activity
JI729_RS04485	COG2140	Oxalate decarboxylase
JI729_RS04495	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JI729_RS04500	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JI729_RS04510	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JI729_RS04515	COG1695	Transcriptional regulator
JI729_RS04530	COG1595	DNA-templated transcription, initiation
JI729_RS04540	COG0772	Belongs to the SEDS family
JI729_RS04555	COG3973	AAA domain
JI729_RS04560	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JI729_RS04580	COG4980	gas vesicle protein
JI729_RS04585	COG0537	adenosine 5'-monophosphoramidase activity
JI729_RS04590	COG1131	(ABC) transporter
JI729_RS04595	COG4473	ABC transporter
JI729_RS04610	COG1309	transcriptional regulator
JI729_RS04620	COG3402	PFAM membrane-flanked domain
JI729_RS04625	COG3428	Bacterial PH domain
JI729_RS04660	COG0697	spore germination
JI729_RS04665	COG3402	PFAM membrane-flanked domain
JI729_RS04670	COG3428	Bacterial PH domain
JI729_RS04675	COG2329	Antibiotic biosynthesis monooxygenase
JI729_RS04680	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JI729_RS04695	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JI729_RS04730	COG1309	transcriptional regulator
JI729_RS04735	COG1511	domain protein
JI729_RS04765	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS04770	COG1609	Transcriptional regulator
JI729_RS04780	COG1234	tRNA 3'-trailer cleavage
JI729_RS04785	COG0095	Lipoate-protein ligase
JI729_RS04795	COG0318	PFAM AMP-dependent synthetase and ligase
JI729_RS04805	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JI729_RS04815	COG4208	sulfate ABC transporter
JI729_RS04900	COG1408	metallophosphoesterase
JI729_RS04905	COG1078	dGTPase activity
JI729_RS04915	COG1595	DNA-templated transcription, initiation
JI729_RS04920	COG2207	Transcriptional regulator
JI729_RS04920	COG3708	Transcriptional regulator
JI729_RS04930	COG2205	protein histidine kinase activity
JI729_RS04935	COG0745	RESPONSE REGULATOR receiver
JI729_RS04960	COG0501	Belongs to the peptidase M48B family
JI729_RS04965	COG0840	transmembrane signaling receptor activity
JI729_RS04970	COG3693	PFAM glycoside hydrolase, family 10
JI729_RS04980	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JI729_RS04985	COG2224	Isocitrate lyase
JI729_RS05000	COG1278	Cold shock
JI729_RS05020	COG0398	Pfam SNARE associated Golgi protein
JI729_RS05080	COG0179	Fumarylacetoacetate (FAA) hydrolase
JI729_RS05105	COG0367	asparagine synthase
JI729_RS05115	COG0753	catalase activity
JI729_RS05120	COG0004	ammonium transporteR
JI729_RS05140	COG2996	Protein conserved in bacteria
JI729_RS05155	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JI729_RS05170	COG0561	phosphatase activity
JI729_RS05190	COG2267	carboxylic ester hydrolase activity
JI729_RS05205	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JI729_RS05210	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JI729_RS05215	COG5504	Zn-dependent protease
JI729_RS05225	COG0180	Tryptophanyl-tRNA synthetase
JI729_RS05235	COG4166	transmembrane transport
JI729_RS05240	COG0601	transmembrane transport
JI729_RS05245	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JI729_RS05250	COG0444	Belongs to the ABC transporter superfamily
JI729_RS05255	COG4608	Belongs to the ABC transporter superfamily
JI729_RS05260	COG0534	Mate efflux family protein
JI729_RS05265	COG4166	transmembrane transport
JI729_RS05280	COG0861	Integral membrane protein TerC family
JI729_RS05300	COG1164	Oligoendopeptidase f
JI729_RS05315	COG2346	COG2346, Truncated hemoglobins
JI729_RS05320	COG4116	CYTH
JI729_RS05330	COG2357	RelA SpoT domain protein
JI729_RS05340	COG0564	pseudouridine synthase activity
JI729_RS05355	COG0772	Belongs to the SEDS family
JI729_RS05360	COG1216	Glycosyl transferase, family 2
JI729_RS05380	COG0463	Glycosyl transferase, family 2
JI729_RS05380	COG0457	Tetratricopeptide repeat
JI729_RS05400	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JI729_RS05415	COG1091	dTDP-4-dehydrorhamnose reductase activity
JI729_RS05460	COG2153	protein acetylation
JI729_RS05470	COG2382	esterase
JI729_RS05490	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JI729_RS05500	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JI729_RS05500	COG0512	Glutamine amidotransferase of anthranilate synthase
JI729_RS05535	COG1620	l-lactate permease
JI729_RS05540	COG5634	Uncharacterized conserved protein (DUF2278)
JI729_RS05590	COG0508	dehydrogenase complex catalyzes the overall conversion of
JI729_RS05640	COG1686	Belongs to the peptidase S11 family
JI729_RS05645	COG0681	Belongs to the peptidase S26 family
JI729_RS05680	COG1012	belongs to the aldehyde dehydrogenase family
JI729_RS05690	COG1176	ABC-type spermidine putrescine transport system, permease component I
JI729_RS05695	COG1177	transmembrane transport
JI729_RS05710	COG2409	Drug exporters of the RND superfamily
JI729_RS05720	COG0564	pseudouridine synthase activity
JI729_RS05730	COG2340	Cysteine-rich secretory protein family
JI729_RS05735	COG0247	lactate metabolic process
JI729_RS05740	COG0277	FAD linked oxidase domain protein
JI729_RS05745	COG3835	regulator
JI729_RS05755	COG0745	RESPONSE REGULATOR receiver
JI729_RS05760	COG5002	protein histidine kinase activity
JI729_RS05765	COG2186	Transcriptional regulator
JI729_RS05785	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JI729_RS05795	COG2116	formate transmembrane transporter activity
JI729_RS05800	COG0861	Integral membrane protein TerC family
JI729_RS05805	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JI729_RS05815	COG2030	dehydratase
JI729_RS05835	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS05840	COG3243	poly(R)-hydroxyalkanoic acid synthase
JI729_RS05850	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JI729_RS05865	COG1840	ABC-type Fe3 transport system, periplasmic component
JI729_RS05870	COG3842	ATPase activity
JI729_RS05895	COG1349	DNA-binding transcription factor activity
JI729_RS05905	COG0235	Class ii aldolase
JI729_RS05915	COG2861	carbohydrate metabolic process
JI729_RS05925	COG3852	Histidine kinase
JI729_RS05930	COG1846	Transcriptional regulator
JI729_RS05940	COG2318	DinB family
JI729_RS05945	COG5002	protein histidine kinase activity
JI729_RS05955	COG0720	synthase
JI729_RS05970	COG4873	Protein conserved in bacteria
JI729_RS06000	COG1780	Probably involved in ribonucleotide reductase function
JI729_RS06005	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JI729_RS06020	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JI729_RS06025	COG1725	Transcriptional regulator
JI729_RS06030	COG1131	(ABC) transporter
JI729_RS06040	COG1131	(ABC) transporter
JI729_RS06060	COG1522	sequence-specific DNA binding
JI729_RS06070	COG1335	isochorismatase
JI729_RS06080	COG1619	proteins homologs of microcin C7 resistance protein MccF
JI729_RS06085	COG2070	2-Nitropropane dioxygenase
JI729_RS06090	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JI729_RS06100	COG1696	Membrane protein involved in D-alanine export
JI729_RS06125	COG0716	FMN binding
JI729_RS06180	COG1846	Transcriptional regulator
JI729_RS06190	COG1301	dicarboxylic acid transport
JI729_RS06195	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JI729_RS06200	COG4709	membrane
JI729_RS06205	COG3874	Sporulation protein YtfJ
JI729_RS06225	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JI729_RS06230	COG0028	Belongs to the TPP enzyme family
JI729_RS06235	COG0440	acetolactate synthase activity
JI729_RS06245	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JI729_RS06310	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JI729_RS06325	COG1183	phosphatidylcholine synthase activity
JI729_RS06330	COG1368	sulfuric ester hydrolase activity
JI729_RS06340	COG0019	diaminopimelate decarboxylase activity
JI729_RS06360	COG0529	Catalyzes the synthesis of activated sulfate
JI729_RS06365	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JI729_RS06385	COG1648	precorrin-2 dehydrogenase activity
JI729_RS06390	COG0733	neurotransmitter:sodium symporter activity
JI729_RS06415	COG1757	Na H antiporter
JI729_RS06430	COG4758	membrane
JI729_RS06435	COG4585	Histidine kinase
JI729_RS06440	COG2197	response regulator
JI729_RS06450	COG1114	Component of the transport system for branched-chain amino acids
JI729_RS06500	COG0730	response to heat
JI729_RS06505	COG0306	phosphate transporter
JI729_RS06510	COG1392	Phosphate transport regulator
JI729_RS06515	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JI729_RS06530	COG3852	Histidine kinase
JI729_RS06535	COG1801	Protein of unknown function DUF72
JI729_RS06545	COG0582	viral genome integration into host DNA
JI729_RS06550	COG5002	protein histidine kinase activity
JI729_RS06565	COG0392	lysyltransferase activity
JI729_RS06565	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JI729_RS06580	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JI729_RS06585	COG1686	Belongs to the peptidase S11 family
JI729_RS06590	COG2715	membrane protein required for spore maturation
JI729_RS06595	COG0700	Nucleoside recognition
JI729_RS06600	COG1187	pseudouridine synthase activity
JI729_RS06610	COG1333	cytochrome c biogenesis protein
JI729_RS06615	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JI729_RS06620	COG0745	RESPONSE REGULATOR receiver
JI729_RS06625	COG5002	protein histidine kinase activity
JI729_RS06630	COG2096	Adenosyltransferase
JI729_RS06645	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JI729_RS06650	COG1141	Ferredoxin
JI729_RS06660	COG0514	ATP-dependent DNA helicase (RecQ)
JI729_RS06665	COG1266	CAAX protease self-immunity
JI729_RS06675	COG1408	metallophosphoesterase
JI729_RS06680	COG0789	Transcriptional regulator
JI729_RS06690	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JI729_RS06710	COG0492	ferredoxin-NADP+ reductase activity
JI729_RS06715	COG0252	asparaginase activity
JI729_RS06785	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JI729_RS06800	COG0142	geranyltranstransferase activity
JI729_RS06810	COG0142	geranyltranstransferase activity
JI729_RS06835	COG0457	Tetratricopeptide repeat
JI729_RS06855	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JI729_RS06860	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JI729_RS06860	COG2010	Cytochrome c
JI729_RS06865	COG4347	Protein of unknown function (DUF1405)
JI729_RS06880	COG2738	Putative neutral zinc metallopeptidase
JI729_RS06890	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JI729_RS06895	COG1694	Mazg nucleotide pyrophosphohydrolase
JI729_RS06915	COG0438	transferase activity, transferring glycosyl groups
JI729_RS06950	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JI729_RS06950	COG1199	ATP-dependent helicase activity
JI729_RS06970	COG3935	DnaD domain protein
JI729_RS06975	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JI729_RS06985	COG4499	WXG100 protein secretion system (Wss), protein YukC
JI729_RS06985	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JI729_RS07040	COG0116	Belongs to the methyltransferase superfamily
JI729_RS07050	COG1199	ATP-dependent helicase activity
JI729_RS07055	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JI729_RS07065	COG0024	Methionine aminopeptidase
JI729_RS07075	COG2233	PERMEase
JI729_RS07080	COG2311	Membrane
JI729_RS07085	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JI729_RS07095	COG0456	acetyltransferase
JI729_RS07145	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JI729_RS07160	COG3944	biosynthesis protein
JI729_RS07170	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JI729_RS07185	COG1215	transferase activity, transferring glycosyl groups
JI729_RS07190	COG0438	transferase activity, transferring glycosyl groups
JI729_RS07205	COG0454	-acetyltransferase
JI729_RS07225	COG0328	RNA-DNA hybrid ribonuclease activity
JI729_RS07260	COG3403	YqcI/YcgG family
JI729_RS07265	COG1280	lysine exporter protein (LysE YggA)
JI729_RS07285	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JI729_RS07290	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JI729_RS07300	COG0475	glutathione-regulated potassium exporter activity
JI729_RS07305	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JI729_RS07310	COG4978	Transcriptional regulator
JI729_RS07310	COG0789	Transcriptional regulator
JI729_RS07320	COG2323	membrane
JI729_RS07325	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JI729_RS07360	COG1923	regulation of RNA biosynthetic process
JI729_RS07370	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JI729_RS07375	COG1360	Flagellar Motor Protein
JI729_RS07380	COG2201	protein-glutamate methylesterase activity
JI729_RS07385	COG2198	Histidine kinase
JI729_RS07385	COG0643	Histidine kinase
JI729_RS07390	COG1776	CheC inhibitor of MCP methylation
JI729_RS07390	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JI729_RS07405	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JI729_RS07425	COG1256	bacterial-type flagellum assembly
JI729_RS07430	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JI729_RS07450	COG1815	bacterial-type flagellum-dependent cell motility
JI729_RS07465	COG1766	The M ring may be actively involved in energy transduction
JI729_RS07470	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JI729_RS07480	COG1157	protein secretion by the type III secretion system
JI729_RS07500	COG1749	Flagellar hook protein flgE
JI729_RS07515	COG0835	chemotaxis
JI729_RS07515	COG0784	Response regulator, receiver
JI729_RS07525	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JI729_RS07530	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JI729_RS07535	COG0741	lytic transglycosylase activity
JI729_RS07545	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JI729_RS07550	COG1776	CheC inhibitor of MCP methylation
JI729_RS07550	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JI729_RS07560	COG1338	Plays a role in the flagellum-specific transport system
JI729_RS07565	COG1987	bacterial-type flagellum assembly
JI729_RS07575	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JI729_RS07580	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JI729_RS07585	COG1419	protein localization to endoplasmic reticulum
JI729_RS07590	COG4786	Flagellar basal body rod
JI729_RS07595	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JI729_RS07630	COG2329	Antibiotic biosynthesis monooxygenase
JI729_RS07655	COG0583	DNA-binding transcription factor activity
JI729_RS07660	COG3842	ATPase activity
JI729_RS07675	COG1234	tRNA 3'-trailer cleavage
JI729_RS07705	COG0406	alpha-ribazole phosphatase activity
JI729_RS07735	COG0367	asparagine synthase
JI729_RS07765	COG1802	Transcriptional regulator
JI729_RS07770	COG0697	spore germination
JI729_RS07780	COG0523	cobalamin synthesis protein
JI729_RS07785	COG0701	Predicted permease
JI729_RS07800	COG1757	Na H antiporter
JI729_RS07805	COG0789	Transcriptional regulator
JI729_RS07835	COG0534	Mate efflux family protein
JI729_RS07840	COG3340	Belongs to the peptidase S51 family
JI729_RS07860	COG0785	Cytochrome C biogenesis protein
JI729_RS07865	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JI729_RS07885	COG2733	membrane
JI729_RS07920	COG1131	(ABC) transporter
JI729_RS07940	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JI729_RS07945	COG0528	UMP kinase activity
JI729_RS07955	COG1027	Aspartate ammonia-lyase
JI729_RS07960	COG0281	malic enzyme
JI729_RS07965	COG4191	Histidine kinase
JI729_RS07970	COG0784	Response regulator, receiver
JI729_RS07975	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JI729_RS08020	COG2814	Major facilitator Superfamily
JI729_RS08035	COG1695	Transcriptional regulator
JI729_RS08050	COG0477	Major facilitator Superfamily
JI729_RS08060	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JI729_RS08065	COG2223	nitrite transmembrane transporter activity
JI729_RS08070	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JI729_RS08090	COG0733	neurotransmitter:sodium symporter activity
JI729_RS08100	COG5566	PFAM Mor transcription activator
JI729_RS08105	COG2323	membrane
JI729_RS08125	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JI729_RS08135	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JI729_RS08140	COG0028	Belongs to the TPP enzyme family
JI729_RS08160	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JI729_RS08185	COG2814	Major facilitator Superfamily
JI729_RS08190	COG3384	dioxygenase
JI729_RS08200	COG3279	Response regulator of the LytR AlgR family
JI729_RS08205	COG0427	acetyl-CoA hydrolase
JI729_RS08225	COG4166	transmembrane transport
JI729_RS08230	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS08250	COG1914	H( )-stimulated, divalent metal cation uptake system
JI729_RS08265	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JI729_RS08270	COG0531	amino acid
JI729_RS08305	COG1309	transcriptional regulator
JI729_RS08310	COG2390	Transcriptional regulator
JI729_RS08320	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JI729_RS08325	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JI729_RS08340	COG4846	Membrane protein involved in cytochrome C biogenesis
JI729_RS08350	COG0006	proline dipeptidase activity
JI729_RS08360	COG2132	Multicopper oxidase
JI729_RS08370	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JI729_RS08390	COG1114	Component of the transport system for branched-chain amino acids
JI729_RS08400	COG2372	response to copper ion
JI729_RS08400	COG1276	copper resistance
JI729_RS08405	COG4549	nuclear export factor GLE1
JI729_RS08410	COG0697	spore germination
JI729_RS08415	COG0583	DNA-binding transcription factor activity
JI729_RS08420	COG1959	2 iron, 2 sulfur cluster binding
JI729_RS08425	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JI729_RS08430	COG0778	Nitroreductase
JI729_RS08440	COG0628	permease
JI729_RS08450	COG1231	oxidoreductase activity
JI729_RS08455	COG0523	cobalamin synthesis protein
JI729_RS08465	COG0411	ABC transporter
JI729_RS08485	COG0583	DNA-binding transcription factor activity
JI729_RS08495	COG1942	4-Oxalocrotonate Tautomerase
JI729_RS08515	COG1271	oxidase subunit
JI729_RS08520	COG1294	oxidase, subunit
JI729_RS08525	COG4988	ABC transporter
JI729_RS08530	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JI729_RS08540	COG1216	Glycosyl transferase, family 2
JI729_RS08580	COG1686	Belongs to the peptidase S11 family
JI729_RS08595	COG1388	LysM domain
JI729_RS08595	COG0791	NLP P60 protein
JI729_RS08605	COG1132	(ABC) transporter
JI729_RS08610	COG0745	RESPONSE REGULATOR receiver
JI729_RS08615	COG5002	protein histidine kinase activity
JI729_RS08620	COG0300	oxidoreductase activity
JI729_RS08650	COG0460	homoserine dehydrogenase
JI729_RS08675	COG1316	TRANSCRIPTIONal
JI729_RS08685	COG0745	RESPONSE REGULATOR receiver
JI729_RS08690	COG5002	protein histidine kinase activity
JI729_RS08705	COG1285	pathogenesis
JI729_RS08710	COG1247	-acetyltransferase
JI729_RS08730	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JI729_RS08740	COG1082	Xylose isomerase domain protein TIM barrel
JI729_RS08750	COG2814	Major facilitator Superfamily
JI729_RS08755	COG1279	arginine transmembrane transporter activity
JI729_RS08760	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JI729_RS08770	COG1752	Esterase of the alpha-beta hydrolase superfamily
JI729_RS08805	COG0577	efflux transmembrane transporter activity
JI729_RS08810	COG2002	toxin-antitoxin pair type II binding
JI729_RS08815	COG1404	Belongs to the peptidase S8 family
JI729_RS08825	COG3152	Membrane
JI729_RS08850	COG0840	transmembrane signaling receptor activity
JI729_RS08865	COG3949	Membrane
JI729_RS08870	COG0783	Belongs to the Dps family
JI729_RS08885	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JI729_RS08895	COG1231	oxidoreductase activity
JI729_RS08900	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS08905	COG4989	oxidoreductase activity
JI729_RS08910	COG0523	cobalamin synthesis protein
JI729_RS08915	COG0456	acetyltransferase
JI729_RS08920	COG0803	Belongs to the bacterial solute-binding protein 9 family
JI729_RS08930	COG0702	epimerase
JI729_RS08940	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JI729_RS08950	COG4166	transmembrane transport
JI729_RS08975	COG5337	Spore coat protein CotH
JI729_RS08980	COG1051	belongs to the nudix hydrolase family
JI729_RS08985	COG0586	Pfam SNARE associated Golgi protein
JI729_RS08990	COG2244	polysaccharide biosynthetic process
JI729_RS09000	COG0701	Predicted permease
JI729_RS09005	COG3689	TIGRFAM TIGR03943 family protein
JI729_RS09010	COG1607	acyl-coa hydrolase
JI729_RS09020	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JI729_RS09035	COG0702	epimerase
JI729_RS09040	COG2839	Protein conserved in bacteria
JI729_RS09045	COG1253	flavin adenine dinucleotide binding
JI729_RS09060	COG1114	Component of the transport system for branched-chain amino acids
JI729_RS09065	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JI729_RS09085	COG0860	N-Acetylmuramoyl-L-alanine amidase
JI729_RS09095	COG1876	peptidase activity
JI729_RS09105	COG2211	Major facilitator Superfamily
JI729_RS09120	COG0860	N-Acetylmuramoyl-L-alanine amidase
JI729_RS09130	COG0561	phosphatase activity
JI729_RS09145	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JI729_RS09160	COG1819	glycosyl
JI729_RS09165	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JI729_RS09170	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JI729_RS09200	COG0456	acetyltransferase
JI729_RS09235	COG4499	WXG100 protein secretion system (Wss), protein YukC
JI729_RS09340	COG3874	Sporulation protein YtfJ
JI729_RS09365	COG2226	methyltransferase
JI729_RS09385	COG1082	Xylose isomerase domain protein TIM barrel
JI729_RS09390	COG0346	lactoylglutathione lyase activity
JI729_RS09400	COG0604	alcohol dehydrogenase
JI729_RS09405	COG1595	DNA-templated transcription, initiation
JI729_RS09430	COG0386	Belongs to the glutathione peroxidase family
JI729_RS09435	COG1305	Transglutaminase-like
JI729_RS09440	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
JI729_RS09445	COG0714	Associated with various cellular activities
JI729_RS09460	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JI729_RS09465	COG1140	nitrate reductase beta subunit
JI729_RS09470	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JI729_RS09475	COG2181	nitrate reductase activity
JI729_RS09480	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JI729_RS09485	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JI729_RS09490	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JI729_RS09495	COG0303	'Molybdopterin
JI729_RS09500	COG0314	molybdopterin synthase activity
JI729_RS09505	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JI729_RS09510	COG2223	nitrite transmembrane transporter activity
JI729_RS09530	COG1648	precorrin-2 dehydrogenase activity
JI729_RS09540	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JI729_RS09540	COG1587	Uroporphyrinogen-III synthase
JI729_RS09545	COG2146	nitrite reductase [NAD(P)H] activity
JI729_RS09550	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JI729_RS09555	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
JI729_RS09590	COG2359	stage V sporulation protein S
JI729_RS09600	COG2856	Zn peptidase
JI729_RS09605	COG1396	sequence-specific DNA binding
JI729_RS09685	COG0582	viral genome integration into host DNA
JI729_RS09690	COG2329	Antibiotic biosynthesis monooxygenase
JI729_RS09710	COG0582	viral genome integration into host DNA
JI729_RS09720	COG5484	DNA packaging
JI729_RS09725	COG1783	phage Terminase large subunit
JI729_RS09745	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JI729_RS09885	COG0457	Tetratricopeptide repeat
JI729_RS09900	COG1418	mRNA catabolic process
JI729_RS09905	COG0488	(ABC) transporter
JI729_RS09920	COG0629	single-stranded DNA binding
JI729_RS09930	COG1413	lyase activity
JI729_RS09945	COG2521	methyltransferase
JI729_RS09945	COG2136	Putative SAM-dependent methyltransferase
JI729_RS09950	COG0018	arginyl-trna synthetase
JI729_RS09990	COG0017	Asparaginyl-tRNA synthetase
JI729_RS09995	COG0733	neurotransmitter:sodium symporter activity
JI729_RS10020	COG2610	gluconate transmembrane transporter activity
JI729_RS10030	COG1794	racemase activity, acting on amino acids and derivatives
JI729_RS10040	COG0456	acetyltransferase
JI729_RS10050	COG3655	Transcriptional regulator
JI729_RS10055	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JI729_RS10065	COG1131	(ABC) transporter
JI729_RS10070	COG4473	ABC transporter
JI729_RS10080	COG0546	phosphoglycolate phosphatase activity
JI729_RS10095	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JI729_RS10110	COG0768	penicillin binding
JI729_RS10120	COG0204	Acyl-transferase
JI729_RS10125	COG1272	protein, Hemolysin III
JI729_RS10135	COG0805	protein transport
JI729_RS10145	COG1307	EDD domain protein, DegV family
JI729_RS10155	COG1999	signal sequence binding
JI729_RS10160	COG0071	Belongs to the small heat shock protein (HSP20) family
JI729_RS10165	COG0367	asparagine synthase
JI729_RS10180	COG0860	N-Acetylmuramoyl-L-alanine amidase
JI729_RS10185	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JI729_RS10190	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JI729_RS10210	COG1335	isochorismatase
JI729_RS10225	COG0668	transmembrane transport
JI729_RS10230	COG4585	Histidine kinase
JI729_RS10230	COG2203	Gaf domain
JI729_RS10235	COG2197	response regulator
JI729_RS10240	COG1737	Transcriptional regulator
JI729_RS10245	COG0384	phenazine biosynthesis protein PhzF
JI729_RS10250	COG1064	alcohol dehydrogenase
JI729_RS10275	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JI729_RS10310	COG0517	IMP dehydrogenase activity
JI729_RS10310	COG1125	glycine betaine transport
JI729_RS10315	COG1174	glycine betaine transport
JI729_RS10350	COG1253	flavin adenine dinucleotide binding
JI729_RS10355	COG1012	belongs to the aldehyde dehydrogenase family
JI729_RS10360	COG5506	Protein of unknown function (DUF1694)
JI729_RS10375	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JI729_RS10380	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JI729_RS10385	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JI729_RS10390	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JI729_RS10395	COG0456	acetyltransferase
JI729_RS10400	COG3829	transcription factor binding
JI729_RS10405	COG1509	lysine 2,3-aminomutase activity
JI729_RS10440	COG4991	sh3 domain protein
JI729_RS10440	COG3064	Membrane
JI729_RS10440	COG0515	serine threonine protein kinase
JI729_RS10445	COG4326	sporulation control protein
JI729_RS10450	COG0671	phosphoesterase, PA-phosphatase related
JI729_RS10455	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JI729_RS10460	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JI729_RS10535	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS10555	COG4499	WXG100 protein secretion system (Wss), protein YukC
JI729_RS10555	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JI729_RS10565	COG2814	Major facilitator Superfamily
JI729_RS10570	COG4841	protein insertion into membrane
JI729_RS10575	COG0372	Belongs to the citrate synthase family
JI729_RS10580	COG2079	MmgE PrpD family protein
JI729_RS10585	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JI729_RS10590	COG1960	acyl-CoA dehydrogenase activity
JI729_RS10595	COG2084	Dehydrogenase
JI729_RS10605	COG1280	lysine exporter protein (LysE YggA)
JI729_RS10610	COG1024	Enoyl-CoA hydratase
JI729_RS10625	COG0420	3'-5' exonuclease activity
JI729_RS10630	COG0419	ATPase involved in DNA repair
JI729_RS10635	COG0582	viral genome integration into host DNA
JI729_RS10665	COG1484	DNA-dependent DNA replication
JI729_RS10730	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JI729_RS10730	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JI729_RS10750	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JI729_RS10770	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
JI729_RS10795	COG0270	DNA (cytosine-5-)-methyltransferase activity
JI729_RS10800	COG0270	DNA (cytosine-5-)-methyltransferase activity
JI729_RS10840	COG0582	viral genome integration into host DNA
JI729_RS11000	COG2223	nitrite transmembrane transporter activity
JI729_RS11005	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS11010	COG1169	isochorismate synthase
JI729_RS11015	COG1021	2,3-dihydroxybenzoate-AMP ligase
JI729_RS11020	COG3433	isochorismatase activity
JI729_RS11020	COG1535	isochorismatase
JI729_RS11025	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JI729_RS11030	COG3251	PFAM MbtH domain protein
JI729_RS11035	COG2814	Major facilitator Superfamily
JI729_RS11050	COG0776	regulation of translation
JI729_RS11060	COG2318	DinB family
JI729_RS11070	COG1115	amino acid carrier protein
JI729_RS11090	COG1187	pseudouridine synthase activity
JI729_RS11095	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JI729_RS11100	COG1136	(ABC) transporter
JI729_RS11115	COG0028	Belongs to the TPP enzyme family
JI729_RS11155	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JI729_RS11175	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS11210	COG1247	-acetyltransferase
JI729_RS11235	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JI729_RS11245	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS11275	COG0583	DNA-binding transcription factor activity
JI729_RS11280	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JI729_RS11295	COG0583	DNA-binding transcription factor activity
JI729_RS11300	COG2258	MOSC domain
JI729_RS11315	COG1132	(ABC) transporter
JI729_RS11320	COG1132	(ABC) transporter
JI729_RS11370	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JI729_RS11375	COG1595	DNA-templated transcription, initiation
JI729_RS11405	COG1649	PFAM Uncharacterised BCR, COG1649
JI729_RS11430	COG2971	BadF BadG BcrA BcrD
JI729_RS11450	COG1846	Transcriptional regulator
JI729_RS11465	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS11485	COG1309	transcriptional regulator
JI729_RS11500	COG0500	methyltransferase
JI729_RS11500	COG3615	Tellurite resistance protein tehB
JI729_RS11510	COG2226	methyltransferase
JI729_RS11515	COG3961	Belongs to the TPP enzyme family
JI729_RS11520	COG1846	Transcriptional regulator
JI729_RS11550	COG2195	Cleaves the N-terminal amino acid of tripeptides
JI729_RS11575	COG2002	toxin-antitoxin pair type II binding
JI729_RS11585	COG0730	response to heat
JI729_RS11590	COG0110	maltose O-acetyltransferase activity
JI729_RS11595	COG1686	Belongs to the peptidase S11 family
JI729_RS11610	COG2814	Major facilitator Superfamily
JI729_RS11655	COG0741	lytic transglycosylase activity
JI729_RS11660	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS11700	COG1760	l-serine dehydratase
JI729_RS11705	COG1760	l-serine dehydratase
JI729_RS11710	COG0814	amino acid
JI729_RS11730	COG1533	DNA photolyase activity
JI729_RS11740	COG0076	glutamate decarboxylase activity
JI729_RS11750	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JI729_RS11775	COG0768	penicillin binding
JI729_RS11780	COG1595	DNA-templated transcription, initiation
JI729_RS11790	COG0768	penicillin binding
JI729_RS11795	COG0768	penicillin binding
JI729_RS11805	COG1408	metallophosphoesterase
JI729_RS11815	COG1131	(ABC) transporter
JI729_RS11825	COG1309	transcriptional regulator
JI729_RS11840	COG1960	acyl-CoA dehydrogenase activity
JI729_RS11845	COG0439	Biotin carboxylase
JI729_RS11850	COG0511	ligase activity, forming carbon-carbon bonds
JI729_RS11855	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JI729_RS11860	COG1024	Enoyl-CoA hydratase
JI729_RS11865	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JI729_RS11870	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JI729_RS11905	COG1686	Belongs to the peptidase S11 family
JI729_RS11930	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JI729_RS11945	COG3227	Zinc metalloprotease (Elastase)
JI729_RS11965	COG2814	Major facilitator Superfamily
JI729_RS11975	COG1733	regulation of RNA biosynthetic process
JI729_RS11980	COG2226	methyltransferase
JI729_RS12015	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JI729_RS12030	COG0693	protein deglycase activity
JI729_RS12045	COG2323	membrane
JI729_RS12050	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JI729_RS12060	COG3386	PFAM SMP-30 Gluconolaconase
JI729_RS12075	COG3773	Cell wall hydrolase
JI729_RS12085	COG0745	RESPONSE REGULATOR receiver
JI729_RS12090	COG2205	protein histidine kinase activity
JI729_RS12095	COG0488	(ABC) transporter
JI729_RS12105	COG1136	(ABC) transporter
JI729_RS12110	COG0577	efflux transmembrane transporter activity
JI729_RS12130	COG0460	homoserine dehydrogenase
JI729_RS12135	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JI729_RS12145	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JI729_RS12170	COG0582	viral genome integration into host DNA
JI729_RS12190	COG1396	sequence-specific DNA binding
JI729_RS12215	COG2002	toxin-antitoxin pair type II binding
JI729_RS12295	COG0582	viral genome integration into host DNA
JI729_RS12345	COG0740	serine-type endopeptidase activity
JI729_RS12465	COG2124	cytochrome p450
JI729_RS12500	COG0561	phosphatase activity
JI729_RS12505	COG5002	protein histidine kinase activity
JI729_RS12510	COG0768	penicillin binding
JI729_RS12520	COG1819	glycosyl
JI729_RS12525	COG1794	racemase activity, acting on amino acids and derivatives
JI729_RS12550	COG2205	protein histidine kinase activity
JI729_RS12595	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JI729_RS12600	COG0604	alcohol dehydrogenase
JI729_RS12605	COG0671	phosphoesterase, PA-phosphatase related
JI729_RS12610	COG0768	penicillin binding
JI729_RS12620	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS12665	COG2814	Major facilitator Superfamily
JI729_RS12670	COG2814	Major facilitator Superfamily
JI729_RS12685	COG0584	glycerophosphoryl diester phosphodiesterase
JI729_RS12705	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JI729_RS12710	COG0697	spore germination
JI729_RS12745	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JI729_RS12755	COG2223	nitrite transmembrane transporter activity
JI729_RS12770	COG0592	DNA-directed DNA polymerase activity
JI729_RS12790	COG3878	Protein conserved in bacteria
JI729_RS12810	COG4667	esterase of the alpha-beta hydrolase superfamily
JI729_RS12850	COG0322	excinuclease ABC activity
JI729_RS12890	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JI729_RS12920	COG1011	Hydrolase
JI729_RS12925	COG0745	RESPONSE REGULATOR receiver
JI729_RS12930	COG5002	protein histidine kinase activity
JI729_RS12945	COG1136	(ABC) transporter
JI729_RS12950	COG0577	efflux transmembrane transporter activity
JI729_RS12955	COG1073	alpha beta
JI729_RS12960	COG0657	acetylesterase activity
JI729_RS12965	COG0076	glutamate decarboxylase activity
JI729_RS12980	COG1523	belongs to the glycosyl hydrolase 13 family
JI729_RS12985	COG3227	Zinc metalloprotease (Elastase)
JI729_RS12990	COG0737	Belongs to the 5'-nucleotidase family
JI729_RS13005	COG0201	protein transport
JI729_RS13010	COG0697	spore germination
JI729_RS13015	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JI729_RS13050	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS13065	COG2959	enzyme of heme biosynthesis
JI729_RS13105	COG1309	transcriptional regulator
JI729_RS13135	COG3284	Transcriptional regulator
JI729_RS13150	COG1349	DNA-binding transcription factor activity
JI729_RS13165	COG1959	2 iron, 2 sulfur cluster binding
JI729_RS13185	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JI729_RS13190	COG0508	dehydrogenase complex catalyzes the overall conversion of
JI729_RS13195	COG0022	dehydrogenase e1 component
JI729_RS13200	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JI729_RS13210	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS13220	COG2816	NAD+ diphosphatase activity
JI729_RS13250	COG4176	ABC-type proline glycine betaine transport system permease component
JI729_RS13255	COG0517	IMP dehydrogenase activity
JI729_RS13255	COG4175	Glycine betaine
JI729_RS13285	COG2153	protein acetylation
JI729_RS13290	COG3397	chitin binding
JI729_RS13295	COG1819	glycosyl
JI729_RS13305	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JI729_RS13315	COG2205	protein histidine kinase activity
JI729_RS13320	COG2226	methyltransferase
JI729_RS13325	COG2315	Protein conserved in bacteria
JI729_RS13370	COG0456	acetyltransferase
JI729_RS13375	COG3973	AAA domain
JI729_RS13390	COG0514	ATP-dependent DNA helicase (RecQ)
JI729_RS13430	COG4637	Psort location Cytoplasmic, score
JI729_RS13445	COG3397	chitin binding
JI729_RS13460	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JI729_RS13465	COG1115	amino acid carrier protein
JI729_RS13470	COG1012	belongs to the aldehyde dehydrogenase family
JI729_RS13475	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JI729_RS13485	COG3938	Belongs to the proline racemase family
JI729_RS13490	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JI729_RS13535	COG1078	dGTPase activity
JI729_RS13540	COG0586	Pfam SNARE associated Golgi protein
JI729_RS13550	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JI729_RS13560	COG4166	transmembrane transport
JI729_RS13570	COG4948	Mandelate Racemase Muconate Lactonizing
JI729_RS13585	COG0667	Aldo Keto reductase
JI729_RS13630	COG3850	Histidine kinase
JI729_RS13630	COG5002	protein histidine kinase activity
JI729_RS13635	COG0745	RESPONSE REGULATOR receiver
JI729_RS13670	COG1164	Oligoendopeptidase f
JI729_RS13675	COG1307	EDD domain protein, DegV family
JI729_RS13715	COG2814	Major facilitator Superfamily
JI729_RS13725	COG1664	Polymer-forming cytoskeletal
JI729_RS13730	COG0789	Transcriptional regulator
JI729_RS13735	COG4533	DNA binding
JI729_RS13740	COG2814	Major facilitator Superfamily
JI729_RS13740	COG0477	Major facilitator Superfamily
JI729_RS13765	COG2261	transglycosylase associated protein
JI729_RS13780	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JI729_RS13815	COG0436	Aminotransferase
JI729_RS13820	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JI729_RS13830	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JI729_RS13845	COG1131	(ABC) transporter
JI729_RS13895	COG0628	permease
JI729_RS13905	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JI729_RS13910	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JI729_RS13915	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JI729_RS13945	COG2746	aminoglycoside 3-N-acetyltransferase activity
JI729_RS13965	COG0697	spore germination
JI729_RS13970	COG2318	DinB family
JI729_RS13990	COG4912	Dna alkylation repair
JI729_RS13995	COG0346	lactoylglutathione lyase activity
JI729_RS14010	COG0861	Integral membrane protein TerC family
JI729_RS14015	COG1368	sulfuric ester hydrolase activity
JI729_RS14020	COG0488	(ABC) transporter
JI729_RS14025	COG1033	growth of symbiont in host cell
JI729_RS14025	COG2409	Drug exporters of the RND superfamily
JI729_RS14030	COG1309	transcriptional regulator
JI729_RS14045	COG0287	Prephenate dehydrogenase
JI729_RS14060	COG1605	Chorismate mutase
JI729_RS14060	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JI729_RS14100	COG1388	LysM domain
JI729_RS14100	COG3584	3D domain protein
JI729_RS14110	COG0346	lactoylglutathione lyase activity
JI729_RS14125	COG1879	ABC-type sugar transport system periplasmic component
JI729_RS14130	COG1172	Belongs to the binding-protein-dependent transport system permease family
JI729_RS14135	COG1172	Belongs to the binding-protein-dependent transport system permease family
JI729_RS14145	COG2390	Transcriptional regulator
JI729_RS14150	COG1070	Carbohydrate kinase
JI729_RS14165	COG2329	Antibiotic biosynthesis monooxygenase
JI729_RS14185	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JI729_RS14200	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JI729_RS14205	COG4187	Peptidase family M20/M25/M40
JI729_RS14210	COG1414	Transcriptional regulator
JI729_RS14215	COG0833	amino acid
JI729_RS14225	COG3239	Fatty acid desaturase
JI729_RS14235	COG2720	vancomycin resistance protein
JI729_RS14240	COG1785	Belongs to the alkaline phosphatase family
JI729_RS14250	COG3655	Transcriptional regulator
JI729_RS14275	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS14280	COG0346	lactoylglutathione lyase activity
JI729_RS14300	COG0714	Associated with various cellular activities
JI729_RS14325	COG1216	Glycosyl transferase, family 2
JI729_RS14350	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JI729_RS14355	COG0753	catalase activity
JI729_RS14395	COG0714	Associated with various cellular activities
JI729_RS14480	COG0778	Nitroreductase
JI729_RS14485	COG1846	Transcriptional regulator
JI729_RS14505	COG3831	ATPase activity
JI729_RS14505	COG4884	unkown
JI729_RS14525	COG0037	tRNA processing
JI729_RS14525	COG0590	tRNA wobble adenosine to inosine editing
JI729_RS14535	COG0456	acetyltransferase
JI729_RS14550	COG0697	spore germination
JI729_RS14555	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JI729_RS14570	COG0642	Histidine kinase
JI729_RS14575	COG0745	RESPONSE REGULATOR receiver
JI729_RS14580	COG0596	Alpha beta hydrolase
JI729_RS14610	COG0730	response to heat
JI729_RS14620	COG0833	amino acid
JI729_RS14630	COG4335	DNA alkylation repair
JI729_RS14665	COG0768	penicillin binding
JI729_RS14700	COG1984	allophanate hydrolase subunit 2
JI729_RS14705	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JI729_RS14710	COG1414	Transcriptional regulator
JI729_RS14720	COG3142	Participates in the control of copper homeostasis
JI729_RS14725	COG0640	Transcriptional regulator
JI729_RS14735	COG1960	acyl-CoA dehydrogenase activity
JI729_RS14750	COG3314	Sporulation integral membrane protein YlbJ
JI729_RS14765	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
JI729_RS14785	COG3848	Pyruvate phosphate dikinase
JI729_RS14785	COG0574	Belongs to the PEP-utilizing enzyme family
JI729_RS14795	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS14815	COG1063	alcohol dehydrogenase
JI729_RS14825	COG1027	Aspartate ammonia-lyase
JI729_RS14830	COG0252	asparaginase activity
JI729_RS14835	COG1396	sequence-specific DNA binding
JI729_RS14875	COG5002	protein histidine kinase activity
JI729_RS14900	COG2207	Transcriptional regulator
JI729_RS14915	COG0322	excinuclease ABC activity
JI729_RS14920	COG0531	amino acid
JI729_RS14935	COG0281	malic enzyme
JI729_RS14950	COG0531	amino acid
JI729_RS14955	COG0697	spore germination
JI729_RS14960	COG0784	Response regulator, receiver
JI729_RS14965	COG4191	Histidine kinase
JI729_RS14975	COG1115	amino acid carrier protein
JI729_RS15000	COG0737	Belongs to the 5'-nucleotidase family
JI729_RS15005	COG2267	carboxylic ester hydrolase activity
JI729_RS15010	COG1335	isochorismatase
JI729_RS15020	COG0583	DNA-binding transcription factor activity
JI729_RS15025	COG1846	Transcriptional regulator
JI729_RS15030	COG0598	Magnesium transport protein CorA
JI729_RS15050	COG1073	alpha beta
JI729_RS15070	COG0415	Belongs to the DNA photolyase family
JI729_RS15075	COG0288	reversible hydration of carbon dioxide
JI729_RS15085	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JI729_RS15090	COG5609	conserved protein (DUF2294)
JI729_RS15105	COG5002	protein histidine kinase activity
JI729_RS15110	COG0745	RESPONSE REGULATOR receiver
JI729_RS15140	COG1329	Transcriptional regulator
JI729_RS15155	COG1073	alpha beta
JI729_RS15175	COG2962	Rard protein
JI729_RS15185	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JI729_RS15190	COG1575	Belongs to the MenA family. Type 1 subfamily
JI729_RS15215	COG0798	PFAM Bile acid sodium symporter
JI729_RS15220	COG0346	lactoylglutathione lyase activity
JI729_RS15225	COG0640	Transcriptional regulator
JI729_RS15235	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JI729_RS15240	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JI729_RS15240	COG3320	Male sterility
JI729_RS15245	COG1309	transcriptional regulator
JI729_RS15260	COG0346	lactoylglutathione lyase activity
JI729_RS15305	COG2814	Major facilitator Superfamily
JI729_RS15320	COG2515	1-aminocyclopropane-1-carboxylate deaminase
JI729_RS15330	COG1690	Belongs to the RtcB family
JI729_RS15485	COG0305	Participates in initiation and elongation during chromosome replication
JI729_RS15515	COG3646	Phage regulatory protein
JI729_RS15575	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JI729_RS15605	COG0577	efflux transmembrane transporter activity
JI729_RS15620	COG3850	Histidine kinase
JI729_RS15620	COG5002	protein histidine kinase activity
JI729_RS15630	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JI729_RS15655	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JI729_RS15695	COG3409	Peptidoglycan-binding domain 1 protein
JI729_RS15695	COG5632	N-Acetylmuramoyl-L-alanine amidase
JI729_RS16025	COG1876	peptidase activity
JI729_RS16030	COG2843	Capsule synthesis protein
JI729_RS16040	COG0477	Major facilitator Superfamily
JI729_RS16055	COG1846	Transcriptional regulator
JI729_RS16060	COG2814	Major facilitator Superfamily
JI729_RS16075	COG2031	fatty acid transporter
JI729_RS16085	COG2249	NAD(P)H dehydrogenase (quinone) activity
JI729_RS16140	COG1288	antiporter activity
JI729_RS16145	COG2356	endonuclease I
JI729_RS16160	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JI729_RS16180	COG1733	regulation of RNA biosynthetic process
JI729_RS16185	COG0778	Nitroreductase
JI729_RS16215	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS16225	COG1131	(ABC) transporter
JI729_RS16250	COG1011	Hydrolase
JI729_RS16260	COG2365	Tyrosine phosphatase family
JI729_RS16290	COG0628	permease
JI729_RS16330	COG0477	Major facilitator Superfamily
JI729_RS16360	COG1253	flavin adenine dinucleotide binding
JI729_RS16365	COG0789	Transcriptional regulator
JI729_RS16375	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JI729_RS16405	COG0697	spore germination
JI729_RS16415	COG1357	PFAM Pentapeptide repeats (8 copies)
JI729_RS16420	COG3813	Protein conserved in bacteria
JI729_RS16425	COG2706	6-phosphogluconolactonase activity
JI729_RS16430	COG1070	Carbohydrate kinase
JI729_RS16440	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JI729_RS16445	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JI729_RS16450	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JI729_RS16455	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JI729_RS16480	COG0840	transmembrane signaling receptor activity
JI729_RS16490	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JI729_RS16490	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JI729_RS16495	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JI729_RS16495	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JI729_RS16500	COG1733	regulation of RNA biosynthetic process
JI729_RS16520	COG0814	amino acid
JI729_RS16550	COG2188	Transcriptional regulator
JI729_RS16555	COG0673	inositol 2-dehydrogenase activity
JI729_RS16575	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS16595	COG0384	phenazine biosynthesis protein PhzF
JI729_RS16610	COG0318	PFAM AMP-dependent synthetase and ligase
JI729_RS16615	COG2249	NAD(P)H dehydrogenase (quinone) activity
JI729_RS16620	COG1733	regulation of RNA biosynthetic process
JI729_RS16645	COG1191	sigma factor activity
JI729_RS16670	COG1280	lysine exporter protein (LysE YggA)
JI729_RS16710	COG1151	hydroxylamine reductase activity
JI729_RS16720	COG3409	Peptidoglycan-binding domain 1 protein
JI729_RS16720	COG3757	hydrolase, family 25
JI729_RS16750	COG2072	flavoprotein involved in K transport
JI729_RS16790	COG1113	amino acid transport
JI729_RS16795	COG2814	Major facilitator Superfamily
JI729_RS16825	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JI729_RS16830	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JI729_RS16845	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JI729_RS16850	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JI729_RS16855	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JI729_RS16860	COG3739	integral membrane protein
JI729_RS16890	COG0583	DNA-binding transcription factor activity
JI729_RS16910	COG1193	negative regulation of DNA recombination
JI729_RS16925	COG2162	N-hydroxyarylamine O-acetyltransferase activity
JI729_RS16930	COG1164	Oligoendopeptidase f
JI729_RS16960	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JI729_RS16985	COG0584	glycerophosphoryl diester phosphodiesterase
JI729_RS16995	COG0640	Transcriptional regulator
JI729_RS17000	COG0604	alcohol dehydrogenase
JI729_RS17010	COG0457	Tetratricopeptide repeat
JI729_RS17020	COG2808	Putative FMN-binding domain
JI729_RS17025	COG0456	acetyltransferase
JI729_RS17025	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JI729_RS17035	COG0385	Bile acid
JI729_RS17040	COG0277	FAD linked oxidase domain protein
JI729_RS17065	COG1183	phosphatidylcholine synthase activity
JI729_RS17070	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS17070	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JI729_RS17075	COG1252	NADH dehydrogenase
JI729_RS17085	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JI729_RS17095	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JI729_RS17110	COG0457	Tetratricopeptide repeat
JI729_RS17145	COG2205	protein histidine kinase activity
JI729_RS17150	COG0745	RESPONSE REGULATOR receiver
JI729_RS17170	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
JI729_RS17180	COG2814	Major facilitator Superfamily
JI729_RS17225	COG0488	(ABC) transporter
JI729_RS17255	COG3852	Histidine kinase
JI729_RS17265	COG1285	pathogenesis
JI729_RS17275	COG2514	catechol 2,3-dioxygenase activity
JI729_RS17280	COG2720	vancomycin resistance protein
JI729_RS17315	COG0716	FMN binding
JI729_RS17325	COG0494	nUDIX hydrolase
JI729_RS17345	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS17355	COG0165	Argininosuccinate lyase
JI729_RS17370	COG4145	pantothenate transmembrane transporter activity
JI729_RS17380	COG1012	belongs to the aldehyde dehydrogenase family
JI729_RS17385	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS17395	COG1657	PFAM Prenyltransferase squalene oxidase
JI729_RS17400	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
JI729_RS17405	COG2962	Rard protein
JI729_RS17410	COG3326	Membrane
JI729_RS17425	COG0489	protein tyrosine kinase activity
JI729_RS17435	COG0314	molybdopterin synthase activity
JI729_RS17440	COG0303	'Molybdopterin
JI729_RS17445	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JI729_RS17450	COG2116	formate transmembrane transporter activity
JI729_RS17460	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JI729_RS17465	COG5609	conserved protein (DUF2294)
JI729_RS17470	COG2427	Protein of unknown function (DUF1641)
JI729_RS17475	COG3383	formate dehydrogenase (NAD+) activity
JI729_RS17480	COG0697	spore germination
JI729_RS17525	COG2226	methyltransferase
JI729_RS17530	COG4166	transmembrane transport
JI729_RS17535	COG4166	transmembrane transport
JI729_RS17540	COG4166	transmembrane transport
JI729_RS17545	COG1301	dicarboxylic acid transport
JI729_RS17550	COG1316	TRANSCRIPTIONal
JI729_RS17560	COG1595	DNA-templated transcription, initiation
JI729_RS17570	COG1131	(ABC) transporter
JI729_RS17580	COG0673	inositol 2-dehydrogenase activity
JI729_RS17585	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JI729_RS17590	COG0187	DNA topoisomerase II activity
JI729_RS17595	COG1832	CoA-binding protein
JI729_RS17600	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JI729_RS17605	COG0745	RESPONSE REGULATOR receiver
JI729_RS17615	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JI729_RS17615	COG1328	CTP reductase activity
JI729_RS17625	COG4841	protein insertion into membrane
JI729_RS17630	COG0824	Thioesterase
JI729_RS17660	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JI729_RS17670	COG1132	(ABC) transporter
JI729_RS17675	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JI729_RS17705	COG2211	Major facilitator Superfamily
JI729_RS17715	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JI729_RS17740	COG0183	Belongs to the thiolase family
JI729_RS17745	COG0318	PFAM AMP-dependent synthetase and ligase
JI729_RS17750	COG1268	BioY protein
JI729_RS17755	COG0318	PFAM AMP-dependent synthetase and ligase
JI729_RS17760	COG1396	sequence-specific DNA binding
JI729_RS17800	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JI729_RS17810	COG5002	protein histidine kinase activity
JI729_RS17815	COG0400	carboxylic ester hydrolase activity
JI729_RS17820	COG0346	lactoylglutathione lyase activity
JI729_RS17825	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JI729_RS17830	COG0069	glutamate synthase activity
JI729_RS17835	COG1902	pentaerythritol trinitrate reductase activity
JI729_RS17840	COG1329	Transcriptional regulator
JI729_RS17845	COG0010	Belongs to the arginase family
JI729_RS17870	COG2226	methyltransferase
JI729_RS17875	COG0693	protein deglycase activity
JI729_RS17910	COG4846	Membrane protein involved in cytochrome C biogenesis
JI729_RS17915	COG0785	Cytochrome C biogenesis protein
JI729_RS17925	COG1473	amidohydrolase
JI729_RS17935	COG1131	(ABC) transporter
JI729_RS17950	COG0583	DNA-binding transcription factor activity
JI729_RS17960	COG1346	cytolysis
JI729_RS17975	COG0730	response to heat
JI729_RS18000	COG1132	(ABC) transporter
JI729_RS18005	COG1132	(ABC) transporter
JI729_RS18040	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JI729_RS18045	COG0737	Belongs to the 5'-nucleotidase family
JI729_RS18055	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JI729_RS18075	COG1695	Transcriptional regulator
JI729_RS18085	COG1196	nuclear chromosome segregation
JI729_RS18085	COG0739	heme binding
JI729_RS18085	COG0741	lytic transglycosylase activity
JI729_RS18090	COG0741	lytic transglycosylase activity
JI729_RS18125	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JI729_RS18130	COG0174	glutamine synthetase
JI729_RS18135	COG0789	Transcriptional regulator
JI729_RS18140	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
JI729_RS18145	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JI729_RS18150	COG2860	membrane
JI729_RS18160	COG0464	growth
JI729_RS18190	COG3584	3D domain protein
JI729_RS18190	COG1388	LysM domain
JI729_RS18195	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JI729_RS18195	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JI729_RS18195	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JI729_RS18200	COG1105	Belongs to the carbohydrate kinase PfkB family
JI729_RS18205	COG1349	DNA-binding transcription factor activity
JI729_RS18210	COG1979	alcohol dehydrogenase
JI729_RS18215	COG2322	membrane
JI729_RS18225	COG1113	amino acid transport
JI729_RS18235	COG1408	metallophosphoesterase
JI729_RS18240	COG2116	formate transmembrane transporter activity
JI729_RS18255	COG2217	Heavy metal translocating P-type atpase
JI729_RS18260	COG2608	mercury ion transmembrane transporter activity
JI729_RS18265	COG1937	Protein conserved in bacteria
JI729_RS18275	COG2819	hydrolase of the alpha beta superfamily
JI729_RS18280	COG1120	ATPase activity
JI729_RS18285	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JI729_RS18290	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JI729_RS18295	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JI729_RS18300	COG0708	Exodeoxyribonuclease III
JI729_RS18305	COG2169	Transcriptional regulator
JI729_RS18310	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JI729_RS18315	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JI729_RS18325	COG2364	Membrane
JI729_RS18340	COG2267	carboxylic ester hydrolase activity
JI729_RS18345	COG5001	Diguanylate cyclase
JI729_RS18345	COG3300	MHYT domain
JI729_RS18365	COG1086	Polysaccharide biosynthesis protein
JI729_RS18385	COG1346	cytolysis
JI729_RS18395	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JI729_RS18405	COG2188	Transcriptional regulator
JI729_RS18410	COG2723	6-phospho-beta-galactosidase activity
JI729_RS18420	COG1404	Belongs to the peptidase S8 family
JI729_RS18425	COG3773	Cell wall hydrolase
JI729_RS18435	COG1368	sulfuric ester hydrolase activity
JI729_RS18440	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JI729_RS18465	COG4550	Control of competence regulator ComK, YlbF/YmcA
JI729_RS18475	COG1013	pyruvate-flavodoxin oxidoreductase activity
JI729_RS18480	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JI729_RS18480	COG0674	pyruvate-flavodoxin oxidoreductase activity
JI729_RS18490	COG2359	stage V sporulation protein S
JI729_RS18495	COG1692	metallophosphoesterase
JI729_RS18520	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JI729_RS18525	COG1426	Protein conserved in bacteria
JI729_RS18540	COG0300	oxidoreductase activity
JI729_RS18545	COG0612	Peptidase, M16
JI729_RS18550	COG0612	Peptidase, M16
JI729_RS18555	COG1079	Belongs to the binding-protein-dependent transport system permease family
JI729_RS18560	COG4603	Belongs to the binding-protein-dependent transport system permease family
JI729_RS18565	COG3845	ABC transporter
JI729_RS18570	COG1744	ABC transporter substrate-binding protein PnrA-like
JI729_RS18575	COG2188	Transcriptional regulator
JI729_RS18590	COG0740	serine-type endopeptidase activity
JI729_RS18595	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JI729_RS18605	COG0527	aspartate kinase activity
JI729_RS18610	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JI729_RS18615	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JI729_RS18630	COG5632	N-Acetylmuramoyl-L-alanine amidase
JI729_RS18660	COG1278	Cold shock
JI729_RS18670	COG0582	viral genome integration into host DNA
JI729_RS18715	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JI729_RS18720	COG1873	PFAM PRC-barrel domain
JI729_RS18725	COG0612	Peptidase, M16
JI729_RS18730	COG0726	polysaccharide deacetylase
JI729_RS18745	COG0196	riboflavin kinase activity
JI729_RS18755	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JI729_RS18760	COG1550	Protein conserved in bacteria
JI729_RS18770	COG1358	cellular component organization or biogenesis
JI729_RS18775	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JI729_RS18780	COG0195	Participates in both transcription termination and antitermination
JI729_RS18800	COG0750	zinc metalloprotease
JI729_RS18810	COG4589	Belongs to the CDS family
JI729_RS18855	COG4974	Belongs to the 'phage' integrase family
JI729_RS18865	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JI729_RS18870	COG0758	DNA mediated transformation
JI729_RS18875	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JI729_RS18915	COG1837	Belongs to the UPF0109 family
JI729_RS18925	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JI729_RS18935	COG0552	protein localization to endoplasmic reticulum
JI729_RS18940	COG1196	nuclear chromosome segregation
JI729_RS18950	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JI729_RS18955	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS18960	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JI729_RS18975	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JI729_RS18980	COG1461	Dihydroxyacetone kinase
JI729_RS18985	COG1302	Protein conserved in bacteria
JI729_RS19000	COG1564	THIamine pyrophosphokinase
JI729_RS19005	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JI729_RS19015	COG2815	serine threonine protein kinase
JI729_RS19015	COG0515	serine threonine protein kinase
JI729_RS19020	COG0631	protein serine/threonine phosphatase activity
JI729_RS19030	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JI729_RS19030	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JI729_RS19045	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JI729_RS19050	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JI729_RS19070	COG1561	YicC-like family, N-terminal region
JI729_RS19075	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JI729_RS19090	COG0006	proline dipeptidase activity
JI729_RS19100	COG3069	C4-dicarboxylate transmembrane transporter activity
JI729_RS19160	COG0564	pseudouridine synthase activity
JI729_RS19180	COG3599	regulation of cell shape
JI729_RS19185	COG2302	S4 RNA-binding domain
JI729_RS19190	COG0762	integral membrane protein
JI729_RS19200	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JI729_RS19210	COG1873	PFAM PRC-barrel domain
JI729_RS19215	COG1191	sigma factor activity
JI729_RS19220	COG1191	sigma factor activity
JI729_RS19230	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JI729_RS19235	COG0849	cell division
JI729_RS19255	COG0772	Belongs to the SEDS family
JI729_RS19275	COG0768	penicillin binding
JI729_RS19280	COG0768	penicillin binding
JI729_RS19300	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JI729_RS19315	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JI729_RS19320	COG1399	metal-binding, possibly nucleic acid-binding protein
JI729_RS19330	COG3480	Lon protease (S16) C-terminal proteolytic domain
JI729_RS19335	COG1752	Esterase of the alpha-beta hydrolase superfamily
JI729_RS19340	COG3314	Sporulation integral membrane protein YlbJ
JI729_RS19350	COG0742	ribosomal rna small subunit methyltransferase
JI729_RS19365	COG3679	Belongs to the UPF0342 family
JI729_RS19370	COG0406	alpha-ribazole phosphatase activity
JI729_RS19385	COG2340	Cysteine-rich secretory protein family
JI729_RS19400	COG3336	cytochrome c oxidase
JI729_RS19435	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JI729_RS19440	COG0772	Belongs to the SEDS family
JI729_RS19450	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JI729_RS19455	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JI729_RS19465	COG4896	Protein conserved in bacteria
JI729_RS19480	COG1217	gtp-binding protein TYPA
JI729_RS19490	COG0483	inositol monophosphate 1-phosphatase activity
JI729_RS19510	COG1982	Orn Lys Arg decarboxylase major
JI729_RS19560	COG0022	dehydrogenase e1 component
JI729_RS19565	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JI729_RS19580	COG0561	phosphatase activity
JI729_RS19590	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JI729_RS19595	COG0569	domain protein
JI729_RS19615	COG0583	DNA-binding transcription factor activity
JI729_RS19620	COG0517	IMP dehydrogenase activity
JI729_RS19630	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
JI729_RS19640	COG4703	Protein of unknown function (DUF1797)
JI729_RS19655	COG2200	EAL domain
JI729_RS19660	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS19665	COG1408	metallophosphoesterase
JI729_RS19710	COG2814	Major facilitator Superfamily
JI729_RS19730	COG3209	COG3209 Rhs family protein
JI729_RS19740	COG2205	protein histidine kinase activity
JI729_RS19750	COG0436	Aminotransferase
JI729_RS19755	COG1609	Transcriptional regulator
JI729_RS19760	COG3833	ABC-type maltose transport systems, permease component
JI729_RS19765	COG1175	transmembrane transport
JI729_RS19770	COG2182	Extracellular solute-binding protein
JI729_RS19780	COG0366	Alpha amylase catalytic
JI729_RS19785	COG3842	ATPase activity
JI729_RS19825	COG0183	Belongs to the thiolase family
JI729_RS19855	COG1695	Transcriptional regulator
JI729_RS19860	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS19880	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JI729_RS19885	COG0436	Aminotransferase
JI729_RS19920	COG2084	Dehydrogenase
JI729_RS19930	COG2199	diguanylate cyclase activity
JI729_RS19935	COG0778	Nitroreductase
JI729_RS19960	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JI729_RS19960	COG1263	PTS System
JI729_RS19960	COG2190	(PTS) system
JI729_RS19965	COG3711	transcriptional antiterminator
JI729_RS19975	COG2188	Transcriptional regulator
JI729_RS19985	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JI729_RS20010	COG1547	Domain of unknown function (DUF309)
JI729_RS20015	COG0456	acetyltransferase
JI729_RS20020	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JI729_RS20025	COG4086	secreted protein
JI729_RS20030	COG0561	phosphatase activity
JI729_RS20035	COG0697	spore germination
JI729_RS20050	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JI729_RS20075	COG0733	neurotransmitter:sodium symporter activity
JI729_RS20095	COG1686	Belongs to the peptidase S11 family
JI729_RS20100	COG1725	Transcriptional regulator
JI729_RS20105	COG1131	(ABC) transporter
JI729_RS20120	COG1846	Transcriptional regulator
JI729_RS20135	COG0598	Magnesium transport protein CorA
JI729_RS20160	COG4974	Belongs to the 'phage' integrase family
JI729_RS20170	COG0735	belongs to the Fur family
JI729_RS20175	COG1300	Membrane
JI729_RS20195	COG0667	Aldo Keto reductase
JI729_RS20200	COG0656	L-ascorbic acid biosynthetic process
JI729_RS20205	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JI729_RS20205	COG0456	acetyltransferase
JI729_RS20215	COG1525	nuclease
JI729_RS20215	COG0737	Belongs to the 5'-nucleotidase family
JI729_RS20215	COG4085	toxin activity
JI729_RS20225	COG0596	Alpha beta hydrolase
JI729_RS20230	COG2056	Na+-H+ antiporter family
JI729_RS20235	COG1609	Transcriptional regulator
JI729_RS20240	COG0456	acetyltransferase
JI729_RS20245	COG1073	alpha beta
JI729_RS20260	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JI729_RS20260	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JI729_RS20265	COG0307	riboflavin synthase, alpha
JI729_RS20295	COG2226	methyltransferase
JI729_RS20295	COG1073	alpha beta
JI729_RS20310	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JI729_RS20320	COG1757	Na H antiporter
JI729_RS20325	COG0737	Belongs to the 5'-nucleotidase family
JI729_RS20335	COG1522	sequence-specific DNA binding
JI729_RS20380	COG0300	oxidoreductase activity
JI729_RS20385	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS20390	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JI729_RS20395	COG1760	l-serine dehydratase
JI729_RS20400	COG1760	l-serine dehydratase
JI729_RS20430	COG1285	pathogenesis
JI729_RS20440	COG2195	Cleaves the N-terminal amino acid of tripeptides
JI729_RS20445	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS20460	COG1376	ErfK ybiS ycfS ynhG family protein
JI729_RS20465	COG4129	membrane
JI729_RS20470	COG1126	abc transporter atp-binding protein
JI729_RS20475	COG0765	amino acid transport
JI729_RS20480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JI729_RS20500	COG2323	membrane
JI729_RS20505	COG0772	Belongs to the SEDS family
JI729_RS20510	COG0508	dehydrogenase complex catalyzes the overall conversion of
JI729_RS20515	COG0022	dehydrogenase e1 component
JI729_RS20520	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JI729_RS20525	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JI729_RS20540	COG0280	phosphate acetyltransferase
JI729_RS20545	COG3829	transcription factor binding
JI729_RS20545	COG3290	protein histidine kinase activity
JI729_RS20555	COG0584	glycerophosphoryl diester phosphodiesterase
JI729_RS20560	COG3093	addiction module antidote protein HigA
JI729_RS20575	COG0750	zinc metalloprotease
JI729_RS20580	COG0497	DNA recombination
JI729_RS20590	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JI729_RS20600	COG0142	geranyltranstransferase activity
JI729_RS20625	COG1302	Protein conserved in bacteria
JI729_RS20630	COG0439	Biotin carboxylase
JI729_RS20635	COG0511	ligase activity, forming carbon-carbon bonds
JI729_RS20680	COG3854	ATPases associated with a variety of cellular activities
JI729_RS20705	COG0006	proline dipeptidase activity
JI729_RS20720	COG3872	metal-dependent enzyme
JI729_RS20730	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JI729_RS20765	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JI729_RS20775	COG1609	Transcriptional regulator
JI729_RS20785	COG2076	Multidrug Resistance protein
JI729_RS20790	COG2076	Multidrug Resistance protein
JI729_RS20820	COG1131	(ABC) transporter
JI729_RS20825	COG1725	Transcriptional regulator
JI729_RS20855	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JI729_RS20920	COG1459	type II secretion system
JI729_RS20925	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JI729_RS20980	COG1410	methionine synthase
JI729_RS20980	COG0646	methionine synthase
JI729_RS20985	COG0646	methionine synthase
JI729_RS20985	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
JI729_RS20990	COG0626	cystathionine gamma-synthase activity
JI729_RS20995	COG0626	cystathionine gamma-synthase activity
JI729_RS21015	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS21025	COG1940	carbohydrate kinase activity
JI729_RS21030	COG4483	Protein conserved in bacteria
JI729_RS21035	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JI729_RS21040	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JI729_RS21045	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JI729_RS21050	COG0704	Plays a role in the regulation of phosphate uptake
JI729_RS21060	COG0573	inorganic phosphate transmembrane transporter activity
JI729_RS21065	COG0573	inorganic phosphate transmembrane transporter activity
JI729_RS21070	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JI729_RS21075	COG0768	penicillin binding
JI729_RS21080	COG0477	Major facilitator Superfamily
JI729_RS21085	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JI729_RS21095	COG5521	maltodextrose utilization protein MalA
JI729_RS21110	COG0735	belongs to the Fur family
JI729_RS21115	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JI729_RS21120	COG1121	(ABC) transporter
JI729_RS21125	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JI729_RS21155	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JI729_RS21160	COG2384	SAM-dependent methyltransferase
JI729_RS21170	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JI729_RS21175	COG0358	DNA primase activity
JI729_RS21185	COG0517	IMP dehydrogenase activity
JI729_RS21200	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JI729_RS21205	COG0295	cytidine deaminase activity
JI729_RS21210	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JI729_RS21220	COG1480	7TM receptor with intracellular HD hydrolase
JI729_RS21225	COG1702	phosphate starvation-inducible protein PhoH
JI729_RS21240	COG1610	YqeY-like protein
JI729_RS21245	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JI729_RS21250	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JI729_RS21255	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JI729_RS21285	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JI729_RS21290	COG1733	regulation of RNA biosynthetic process
JI729_RS21315	COG1466	dna polymerase III delta subunit
JI729_RS21325	COG0658	competence protein
JI729_RS21325	COG2333	competence protein COMEC
JI729_RS21330	COG2131	deaminase
JI729_RS21335	COG1596	polysaccharide export
JI729_RS21335	COG1555	photosystem II stabilization
JI729_RS21340	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JI729_RS21345	COG2226	methyltransferase
JI729_RS21350	COG0799	negative regulation of ribosome biogenesis
JI729_RS21355	COG1713	HD superfamily hydrolase involved in NAD metabolism
JI729_RS21365	COG1534	Rna-binding protein
JI729_RS21375	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JI729_RS21380	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
JI729_RS21405	COG1595	DNA-templated transcription, initiation
JI729_RS21415	COG0778	Nitroreductase
JI729_RS21420	COG2357	RelA SpoT domain protein
JI729_RS21430	COG1785	Belongs to the alkaline phosphatase family
JI729_RS21440	COG2267	carboxylic ester hydrolase activity
JI729_RS21475	COG1404	Belongs to the peptidase S8 family
JI729_RS21480	COG3186	Phenylalanine-4-hydroxylase
JI729_RS21490	COG2514	catechol 2,3-dioxygenase activity
JI729_RS21495	COG2259	Doxx family
JI729_RS21535	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JI729_RS21545	COG1454	alcohol dehydrogenase
JI729_RS21545	COG1012	belongs to the aldehyde dehydrogenase family
JI729_RS21550	COG0626	cystathionine gamma-synthase activity
JI729_RS21555	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JI729_RS21580	COG0768	penicillin binding
JI729_RS21600	COG0826	peptidase U32
JI729_RS21605	COG0826	peptidase U32
JI729_RS21610	COG4122	O-methyltransferase activity
JI729_RS21615	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JI729_RS21645	COG0628	permease
JI729_RS21665	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JI729_RS21680	COG1104	cysteine desulfurase activity
JI729_RS21685	COG1959	2 iron, 2 sulfur cluster binding
JI729_RS21690	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JI729_RS21700	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JI729_RS21725	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JI729_RS21735	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
JI729_RS21735	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JI729_RS21740	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JI729_RS21745	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JI729_RS21745	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JI729_RS21755	COG2244	polysaccharide biosynthetic process
JI729_RS21760	COG2323	membrane
JI729_RS21770	COG1862	Preprotein translocase
JI729_RS21800	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JI729_RS21830	COG0157	Belongs to the NadC ModD family
JI729_RS21835	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JI729_RS21840	COG1104	cysteine desulfurase activity
JI729_RS21845	COG1827	regulation of RNA biosynthetic process
JI729_RS21850	COG2258	MOSC domain
JI729_RS21860	COG0077	Prephenate dehydratase
JI729_RS21865	COG0577	efflux transmembrane transporter activity
JI729_RS21870	COG0577	efflux transmembrane transporter activity
JI729_RS21875	COG1136	(ABC) transporter
JI729_RS21880	COG5002	protein histidine kinase activity
JI729_RS21885	COG0745	RESPONSE REGULATOR receiver
JI729_RS21895	COG3290	protein histidine kinase activity
JI729_RS21905	COG2868	ribosomal protein
JI729_RS21915	COG1530	ribonuclease E activity
JI729_RS21920	COG1994	Peptidase M50
JI729_RS21925	COG0739	heme binding
JI729_RS21930	COG2894	cell division
JI729_RS21950	COG1077	Cell shape determining protein MreB Mrl
JI729_RS21970	COG0285	dihydrofolate synthase activity
JI729_RS21985	COG1388	LysM domain
JI729_RS21995	COG0113	porphobilinogen synthase activity
JI729_RS22000	COG1587	Uroporphyrinogen-III synthase
JI729_RS22010	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JI729_RS22020	COG1846	Transcriptional regulator
JI729_RS22025	COG1764	response to oxidative stress
JI729_RS22040	COG1067	ATP-dependent peptidase activity
JI729_RS22040	COG0470	DNA polymerase III
JI729_RS22110	COG0622	Phosphoesterase
JI729_RS22125	COG5401	PFAM Sporulation and spore germination
JI729_RS22140	COG2197	response regulator
JI729_RS22145	COG2233	PERMEase
JI729_RS22150	COG0402	S-adenosylhomocysteine deaminase activity
JI729_RS22155	COG1983	PspC domain protein
JI729_RS22160	COG1396	sequence-specific DNA binding
JI729_RS22165	COG0697	spore germination
JI729_RS22175	COG1959	2 iron, 2 sulfur cluster binding
JI729_RS22180	COG1668	transmembrane transport
JI729_RS22185	COG4152	abc transporter atp-binding protein
JI729_RS22190	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
JI729_RS22195	COG1360	Flagellar Motor Protein
JI729_RS22200	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JI729_RS22205	COG1876	peptidase activity
JI729_RS22210	COG0824	Thioesterase
JI729_RS22215	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JI729_RS22220	COG1053	succinate dehydrogenase
JI729_RS22225	COG2009	succinate dehydrogenase
JI729_RS22230	COG1719	4-vinyl reductase, 4VR
JI729_RS22240	COG3118	belongs to the thioredoxin family
JI729_RS22245	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JI729_RS22250	COG2086	electron transfer activity
JI729_RS22255	COG1024	Enoyl-CoA hydratase
JI729_RS22260	COG1309	transcriptional regulator
JI729_RS22265	COG0318	PFAM AMP-dependent synthetase and ligase
JI729_RS22295	COG2318	DinB family
JI729_RS22325	COG1131	(ABC) transporter
JI729_RS22330	COG2205	protein histidine kinase activity
JI729_RS22335	COG0745	RESPONSE REGULATOR receiver
JI729_RS22345	COG4895	conserved protein (DUF2196)
JI729_RS22350	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JI729_RS22360	COG4509	Sortase family
JI729_RS22365	COG1120	ATPase activity
JI729_RS22380	COG5386	Cell surface protein
JI729_RS22390	COG5386	Cell surface protein
JI729_RS22395	COG1114	Component of the transport system for branched-chain amino acids
JI729_RS22400	COG1187	pseudouridine synthase activity
JI729_RS22410	COG1796	DNA polymerase
JI729_RS22410	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JI729_RS22415	COG1286	toxin biosynthetic process
JI729_RS22460	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JI729_RS22470	COG1418	mRNA catabolic process
JI729_RS22490	COG2814	Major facilitator Superfamily
JI729_RS22495	COG1566	PFAM secretion protein HlyD family protein
JI729_RS22500	COG1309	transcriptional regulator
JI729_RS22505	COG1363	Peptidase, m42
JI729_RS22530	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JI729_RS22545	COG1484	DNA-dependent DNA replication
JI729_RS22550	COG3611	Membrane attachment protein
JI729_RS22560	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
JI729_RS22565	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JI729_RS22575	COG1971	Probably functions as a manganese efflux pump
JI729_RS22585	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JI729_RS22585	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JI729_RS22590	COG5002	protein histidine kinase activity
JI729_RS22595	COG0745	RESPONSE REGULATOR receiver
JI729_RS22615	COG0538	isocitrate dehydrogenase activity
JI729_RS22620	COG0372	Belongs to the citrate synthase family
JI729_RS22630	COG0628	permease
JI729_RS22635	COG3030	protein affecting phage T7 exclusion by the F plasmid
JI729_RS22660	COG1725	Transcriptional regulator
JI729_RS22665	COG0281	malic enzyme
JI729_RS22670	COG0587	DNA-directed DNA polymerase activity
JI729_RS22685	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JI729_RS22700	COG4109	DRTGG domain
JI729_RS22715	COG0006	proline dipeptidase activity
JI729_RS22750	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS22755	COG0662	Cupin 2, conserved barrel domain protein
JI729_RS22770	COG1028	Short-chain dehydrogenase reductase Sdr
JI729_RS22775	COG0589	response to stress
JI729_RS22815	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JI729_RS22840	COG0827	DNA restriction-modification system
JI729_RS22845	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JI729_RS22850	COG3874	Sporulation protein YtfJ
JI729_RS22865	COG1574	metal-dependent hydrolase with the TIM-barrel fold
JI729_RS22875	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JI729_RS22890	COG1104	cysteine desulfurase activity
JI729_RS22900	COG0583	DNA-binding transcription factor activity
JI729_RS22905	COG0697	spore germination
JI729_RS22910	COG1309	transcriptional regulator
JI729_RS22915	COG1956	GAF domain-containing protein
JI729_RS22920	COG0626	cystathionine gamma-synthase activity
JI729_RS22980	COG1595	DNA-templated transcription, initiation
JI729_RS22990	COG0110	maltose O-acetyltransferase activity
JI729_RS22995	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JI729_RS23000	COG0454	-acetyltransferase
JI729_RS23005	COG0517	IMP dehydrogenase activity
JI729_RS23010	COG0123	including yeast histone deacetylase and acetoin utilization protein
JI729_RS23025	COG0745	RESPONSE REGULATOR receiver
JI729_RS23030	COG5002	protein histidine kinase activity
JI729_RS23035	COG0666	response to abiotic stimulus
JI729_RS23070	COG1609	Transcriptional regulator
JI729_RS23075	COG1605	Chorismate mutase
JI729_RS23075	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JI729_RS23080	COG4851	CamS sex pheromone cAM373 precursor
JI729_RS23085	COG3118	belongs to the thioredoxin family
JI729_RS23095	COG2309	aminopeptidase activity
JI729_RS23110	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS23125	COG1674	ftsk spoiiie
JI729_RS23130	COG0860	N-Acetylmuramoyl-L-alanine amidase
JI729_RS23130	COG1388	LysM domain
JI729_RS23140	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JI729_RS23150	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JI729_RS23155	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
JI729_RS23160	COG1363	Peptidase, m42
JI729_RS23170	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS23185	COG0510	thiamine kinase activity
JI729_RS23190	COG1523	belongs to the glycosyl hydrolase 13 family
JI729_RS23200	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JI729_RS23205	COG1349	DNA-binding transcription factor activity
JI729_RS23210	COG1187	pseudouridine synthase activity
JI729_RS23215	COG2244	polysaccharide biosynthetic process
JI729_RS23220	COG2081	HI0933 family
JI729_RS23225	COG2814	Major facilitator Superfamily
JI729_RS23235	COG3832	glyoxalase III activity
JI729_RS23255	COG1329	Transcriptional regulator
JI729_RS23280	COG0314	molybdopterin synthase activity
JI729_RS23285	COG1763	Mo-molybdopterin cofactor biosynthetic process
JI729_RS23290	COG0303	'Molybdopterin
JI729_RS23300	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JI729_RS23305	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JI729_RS23325	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JI729_RS23335	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JI729_RS23380	COG2814	Major facilitator Superfamily
JI729_RS23385	COG0475	glutathione-regulated potassium exporter activity
JI729_RS23390	COG0490	domain, Protein
JI729_RS23395	COG0582	viral genome integration into host DNA
JI729_RS23405	COG1136	(ABC) transporter
JI729_RS23425	COG1242	4 iron, 4 sulfur cluster binding
JI729_RS23430	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JI729_RS23435	COG1794	racemase activity, acting on amino acids and derivatives
JI729_RS23450	COG2267	carboxylic ester hydrolase activity
JI729_RS23455	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JI729_RS23460	COG0671	phosphoesterase, PA-phosphatase related
JI729_RS23465	COG0438	transferase activity, transferring glycosyl groups
JI729_RS23490	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS23535	COG5002	protein histidine kinase activity
JI729_RS23540	COG3852	Histidine kinase
JI729_RS23550	COG2267	carboxylic ester hydrolase activity
JI729_RS23555	COG1368	sulfuric ester hydrolase activity
JI729_RS23575	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JI729_RS23580	COG1116	anion transmembrane transporter activity
JI729_RS23585	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JI729_RS23610	COG0494	nUDIX hydrolase
JI729_RS23640	COG1854	S-ribosylhomocysteine lyase activity
JI729_RS23650	COG0288	reversible hydration of carbon dioxide
JI729_RS23655	COG1271	oxidase subunit
JI729_RS23660	COG1294	oxidase, subunit
JI729_RS23675	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JI729_RS23695	COG1842	Phage shock protein A
JI729_RS23720	COG3859	Proton-coupled thiamine transporter YuaJ
JI729_RS23725	COG5002	protein histidine kinase activity
JI729_RS23730	COG0745	RESPONSE REGULATOR receiver
JI729_RS23755	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JI729_RS23760	COG1597	lipid kinase activity
JI729_RS23795	COG0586	Pfam SNARE associated Golgi protein
JI729_RS23805	COG0577	efflux transmembrane transporter activity
JI729_RS23810	COG1136	(ABC) transporter
JI729_RS23815	COG2207	Transcriptional regulator
JI729_RS23815	COG3708	Transcriptional regulator
JI729_RS23825	COG1131	(ABC) transporter
JI729_RS23830	COG5658	integral membrane protein
JI729_RS23835	COG0640	Transcriptional regulator
JI729_RS23840	COG0745	RESPONSE REGULATOR receiver
JI729_RS23845	COG2205	protein histidine kinase activity
JI729_RS23850	COG0577	efflux transmembrane transporter activity
JI729_RS23855	COG0577	efflux transmembrane transporter activity
JI729_RS23860	COG1136	(ABC) transporter
JI729_RS23865	COG0577	efflux transmembrane transporter activity
JI729_RS23880	COG2188	Transcriptional regulator
JI729_RS23900	COG3964	amidohydrolase
JI729_RS23920	COG4948	Mandelate Racemase Muconate Lactonizing
JI729_RS23940	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JI729_RS23945	COG0596	Alpha beta hydrolase
JI729_RS23955	COG1169	isochorismate synthase
JI729_RS23960	COG1575	Belongs to the MenA family. Type 1 subfamily
JI729_RS23965	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JI729_RS23990	COG0058	SHG alpha-glucan phosphorylase activity
JI729_RS24000	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JI729_RS24120	COG0544	peptidyl-prolyl cis-trans isomerase activity
JI729_RS24155	COG1285	pathogenesis
JI729_RS24160	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JI729_RS24175	COG2155	Conserved Protein
JI729_RS24180	COG1098	S1 RNA binding domain
JI729_RS24185	COG0436	Aminotransferase
JI729_RS24190	COG1522	sequence-specific DNA binding
JI729_RS24195	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JI729_RS24200	COG2267	carboxylic ester hydrolase activity
JI729_RS24210	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JI729_RS24230	COG5018	Exonuclease
JI729_RS24235	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JI729_RS24255	COG2050	protein possibly involved in aromatic compounds catabolism
JI729_RS24265	COG1268	BioY protein
JI729_RS24270	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JI729_RS24275	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JI729_RS24295	COG2076	Multidrug Resistance protein
JI729_RS24300	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JI729_RS24315	COG3584	3D domain protein
JI729_RS24330	COG1252	NADH dehydrogenase
JI729_RS24345	COG3708	Transcriptional regulator
JI729_RS24360	COG1683	Conserved Protein
JI729_RS24370	COG0316	Belongs to the HesB IscA family
JI729_RS24385	COG1252	NADH dehydrogenase
JI729_RS24400	COG0390	transport system, permease component
JI729_RS24405	COG2824	Alkylphosphonate utilization operon protein PhnA
JI729_RS24455	COG4837	Protein of unknown function (DUF1462)
JI729_RS24460	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
JI729_RS24470	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JI729_RS24475	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JI729_RS24495	COG1358	cellular component organization or biogenesis
JI729_RS24505	COG2249	NAD(P)H dehydrogenase (quinone) activity
JI729_RS24510	COG0647	UMP catabolic process
JI729_RS24520	COG2445	Protein of unknown function DUF86
JI729_RS24525	COG1494	fructose-1,6-bisphosphatase
JI729_RS24540	COG4470	Protein conserved in bacteria
JI729_RS24550	COG0789	Transcriptional regulator
JI729_RS24555	COG4377	Putative membrane peptidase family (DUF2324)
JI729_RS24580	COG0739	heme binding
JI729_RS24590	COG3377	Domain of unknown function (DUF1805)
JI729_RS24595	COG0737	Belongs to the 5'-nucleotidase family
JI729_RS24600	COG0719	Fe-S assembly protein
JI729_RS24605	COG0822	iron-sulfur transferase activity
JI729_RS24610	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JI729_RS24615	COG0719	Fe-S assembly protein
JI729_RS24620	COG0396	ATPase activity
JI729_RS24625	COG1464	Belongs to the NlpA lipoprotein family
JI729_RS24630	COG1464	Belongs to the NlpA lipoprotein family
JI729_RS24635	COG2011	ABC-type metal ion transport system permease component
JI729_RS24650	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JI729_RS24655	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JI729_RS24665	COG1393	Belongs to the ArsC family
JI729_RS24685	COG0039	L-malate dehydrogenase activity
JI729_RS24705	COG1309	transcriptional regulator
JI729_RS24710	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JI729_RS24715	COG1960	acyl-CoA dehydrogenase activity
JI729_RS24720	COG0183	Belongs to the thiolase family
JI729_RS24725	COG1024	Enoyl-CoA hydratase
JI729_RS24725	COG1250	3-hydroxyacyl-CoA dehydrogenase
JI729_RS24735	COG1686	Belongs to the peptidase S11 family
JI729_RS24750	COG0011	TIGRFAM Protein of
JI729_RS24755	COG0840	transmembrane signaling receptor activity
JI729_RS24770	COG2814	Major facilitator Superfamily
JI729_RS24775	COG0531	amino acid
JI729_RS24800	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JI729_RS24835	COG0586	Pfam SNARE associated Golgi protein
JI729_RS24845	COG1376	ErfK ybiS ycfS ynhG family protein
JI729_RS24850	COG0745	RESPONSE REGULATOR receiver
JI729_RS24855	COG5002	protein histidine kinase activity
JI729_RS24885	COG0840	transmembrane signaling receptor activity
JI729_RS24890	COG2151	metal-sulfur cluster biosynthetic enzyme
JI729_RS24895	COG3227	Zinc metalloprotease (Elastase)
JI729_RS24900	COG1741	Belongs to the pirin family
JI729_RS24915	COG0475	glutathione-regulated potassium exporter activity
JI729_RS24920	COG0490	domain, Protein
JI729_RS24925	COG1115	amino acid carrier protein
JI729_RS24930	COG0783	Belongs to the Dps family
JI729_RS24945	COG1611	Belongs to the LOG family
JI729_RS24955	COG1528	Iron-storage protein
JI729_RS24960	COG2311	Membrane
JI729_RS24965	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JI729_RS24970	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JI729_RS24975	COG1115	amino acid carrier protein
JI729_RS24980	COG1115	amino acid carrier protein
JI729_RS24985	COG2910	NAD(P)H-binding
JI729_RS25000	COG0656	L-ascorbic acid biosynthetic process
JI729_RS25005	COG2814	Major facilitator Superfamily
JI729_RS25010	COG1733	regulation of RNA biosynthetic process
JI729_RS25020	COG1252	NADH dehydrogenase
JI729_RS25040	COG0840	transmembrane signaling receptor activity
JI729_RS25040	COG3290	protein histidine kinase activity
JI729_RS25075	COG0488	(ABC) transporter
JI729_RS25080	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JI729_RS25100	COG1335	isochorismatase
JI729_RS25105	COG1522	sequence-specific DNA binding
JI729_RS25160	COG0557	exoribonuclease II activity
JI729_RS25165	COG1647	Serine aminopeptidase, S33
JI729_RS25170	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JI729_RS25175	COG1346	cytolysis
JI729_RS25210	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JI729_RS25225	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JI729_RS25230	COG1668	transmembrane transport
JI729_RS25235	COG4152	abc transporter atp-binding protein
JI729_RS25240	COG4585	Histidine kinase
JI729_RS25270	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JI729_RS25285	COG2323	membrane
JI729_RS25295	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JI729_RS25305	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JI729_RS25315	COG1051	belongs to the nudix hydrolase family
JI729_RS25325	COG0492	ferredoxin-NADP+ reductase activity
JI729_RS25330	COG0457	Tetratricopeptide repeat
JI729_RS25335	COG0110	maltose O-acetyltransferase activity
JI729_RS25355	COG1950	PFAM Membrane protein of
JI729_RS25365	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JI729_RS25380	COG0789	Transcriptional regulator
JI729_RS25400	COG0583	DNA-binding transcription factor activity
JI729_RS25410	COG0655	NAD(P)H dehydrogenase (quinone) activity
JI729_RS25415	COG0488	(ABC) transporter
JI729_RS25425	COG1132	(ABC) transporter
JI729_RS25430	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JI729_RS25435	COG3409	Peptidoglycan-binding domain 1 protein
JI729_RS25435	COG0793	Belongs to the peptidase S41A family
JI729_RS25440	COG2177	Part of the ABC transporter FtsEX involved in
JI729_RS25445	COG2884	Cell division ATP-binding protein ftsE
JI729_RS25470	COG1131	(ABC) transporter
JI729_RS25500	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JI729_RS25505	COG1278	Cold shock
JI729_RS25510	COG1040	competence protein
JI729_RS25515	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
JI729_RS25520	COG1388	LysM domain
JI729_RS25520	COG0791	NLP P60 protein
JI729_RS25525	COG1733	regulation of RNA biosynthetic process
JI729_RS25530	COG1307	EDD domain protein, DegV family
JI729_RS25535	COG1739	Uncharacterized protein family UPF0029
JI729_RS25540	COG1316	TRANSCRIPTIONal
JI729_RS25545	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JI729_RS25550	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JI729_RS25555	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JI729_RS25565	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JI729_RS25565	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JI729_RS25585	COG1486	melibiose metabolic process
JI729_RS25590	COG1447	Phosphotransferase system cellobiose-specific component IIA
JI729_RS25595	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JI729_RS25605	COG1447	Phosphotransferase system cellobiose-specific component IIA
JI729_RS25615	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JI729_RS25620	COG1301	dicarboxylic acid transport
JI729_RS25635	COG1511	domain protein
JI729_RS25640	COG0583	DNA-binding transcription factor activity
JI729_RS25645	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JI729_RS25655	COG1271	oxidase subunit
JI729_RS25660	COG1294	oxidase, subunit
JI729_RS25665	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JI729_RS25675	COG1620	l-lactate permease
JI729_RS25685	COG2389	metal-binding protein
JI729_RS25695	COG1368	sulfuric ester hydrolase activity
JI729_RS25705	COG0791	NLP P60 protein
JI729_RS25705	COG1388	LysM domain
JI729_RS25710	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JI729_RS25720	COG1215	transferase activity, transferring glycosyl groups
JI729_RS25725	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JI729_RS25730	COG3584	3D domain protein
JI729_RS25730	COG1388	LysM domain
JI729_RS25755	COG4715	Zinc finger, swim domain protein
JI729_RS25760	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JI729_RS25820	COG0577	efflux transmembrane transporter activity
JI729_RS25825	COG1136	(ABC) transporter
JI729_RS25845	COG2271	Major facilitator Superfamily
JI729_RS25860	COG5002	protein histidine kinase activity
JI729_RS25865	COG0745	RESPONSE REGULATOR receiver
JI729_RS25870	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JI729_RS25875	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JI729_RS25885	COG1316	TRANSCRIPTIONal
JI729_RS25895	COG5039	Polysaccharide pyruvyl transferase
JI729_RS25915	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JI729_RS25920	COG1216	Glycosyl transferase, family 2
JI729_RS25925	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JI729_RS25930	COG4464	protein tyrosine phosphatase activity
JI729_RS25935	COG0489	protein tyrosine kinase activity
JI729_RS25940	COG3944	biosynthesis protein
JI729_RS25945	COG0489	protein tyrosine kinase activity
JI729_RS25960	COG1609	Transcriptional regulator
JI729_RS25970	COG0739	heme binding
JI729_RS25985	COG3279	Response regulator of the LytR AlgR family
JI729_RS25990	COG2385	sporulation resulting in formation of a cellular spore
JI729_RS26005	COG4836	Membrane
JI729_RS26010	COG1007	ATP synthesis coupled electron transport
JI729_RS26015	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JI729_RS26020	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JI729_RS26030	COG0839	Belongs to the complex I subunit 6 family
JI729_RS26050	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JI729_RS26065	COG3300	MHYT domain
JI729_RS26065	COG5001	Diguanylate cyclase
JI729_RS26115	COG0356	it plays a direct role in the translocation of protons across the membrane
JI729_RS26150	COG0698	ribose 5-phosphate isomerase
JI729_RS26165	COG2259	Doxx family
JI729_RS26170	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JI729_RS26185	COG0009	L-threonylcarbamoyladenylate synthase
JI729_RS26220	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JI729_RS26225	COG1494	fructose-1,6-bisphosphatase
JI729_RS26245	COG4821	SIS domain
JI729_RS26255	COG3343	RNA polymerase activity
JI729_RS26265	COG1960	acyl-CoA dehydrogenase activity
JI729_RS26270	COG1960	acyl-CoA dehydrogenase activity
JI729_RS26275	COG1250	3-hydroxyacyl-CoA dehydrogenase
JI729_RS26280	COG0183	Belongs to the thiolase family
JI729_RS26285	COG0247	lactate metabolic process
JI729_RS26285	COG2181	nitrate reductase activity
JI729_RS26290	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JI729_RS26300	COG5001	Diguanylate cyclase
JI729_RS26300	COG3300	MHYT domain
JI729_RS26315	COG3227	Zinc metalloprotease (Elastase)
JI729_RS26320	COG2197	response regulator
JI729_RS26325	COG4585	Histidine kinase
JI729_RS26330	COG0842	Transport permease protein
JI729_RS26335	COG1131	(ABC) transporter
JI729_RS26340	COG0024	Methionine aminopeptidase
JI729_RS26350	COG2234	aminopeptidase activity
JI729_RS26370	COG1595	DNA-templated transcription, initiation
JI729_RS26380	COG4506	Protein conserved in bacteria
JI729_RS26385	COG1619	proteins homologs of microcin C7 resistance protein MccF
JI729_RS26410	COG2814	Major facilitator Superfamily
JI729_RS26415	COG0789	Transcriptional regulator
JI729_RS26420	COG0584	glycerophosphoryl diester phosphodiesterase
JI729_RS26425	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JI729_RS26435	COG1994	Peptidase M50
JI729_RS26445	COG1078	dGTPase activity
JI729_RS26450	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JI729_RS26455	COG1120	ATPase activity
JI729_RS26460	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JI729_RS26465	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JI729_RS26485	COG0280	phosphate acetyltransferase
JI729_RS26500	COG3773	Cell wall hydrolase
JI729_RS26510	COG2363	Small membrane protein
JI729_RS26520	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JI729_RS26525	COG2233	PERMEase
JI729_RS26530	COG0561	phosphatase activity
JI729_RS26535	COG2814	Major facilitator Superfamily
JI729_RS26545	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JI729_RS26550	COG1131	(ABC) transporter
JI729_RS26555	COG2755	lipolytic protein G-D-S-L family
JI729_RS26560	COG1609	Transcriptional regulator
JI729_RS26570	COG0460	homoserine dehydrogenase
JI729_RS26580	COG2873	o-acetylhomoserine
JI729_RS26590	COG1011	Hydrolase
JI729_RS26595	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JI729_RS26605	COG2197	response regulator
JI729_RS26610	COG2203	Gaf domain
JI729_RS26610	COG4585	Histidine kinase
JI729_RS26615	COG0351	phosphomethylpyrimidine kinase
JI729_RS26620	COG3706	GGDEF domain
JI729_RS26625	COG2879	small protein
JI729_RS26630	COG1966	Carbon starvation protein
JI729_RS26635	COG3279	Response regulator of the LytR AlgR family
JI729_RS26640	COG0477	Major facilitator Superfamily
JI729_RS26650	COG0438	transferase activity, transferring glycosyl groups
JI729_RS26665	COG0840	transmembrane signaling receptor activity
JI729_RS26675	COG1607	acyl-coa hydrolase
JI729_RS26680	COG1216	Glycosyl transferase, family 2
JI729_RS26690	COG1216	Glycosyl transferase, family 2
JI729_RS26705	COG0463	Glycosyl transferase, family 2
JI729_RS26710	COG0488	(ABC) transporter
JI729_RS26715	COG1309	transcriptional regulator
JI729_RS26720	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JI729_RS26725	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JI729_RS26725	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JI729_RS26730	COG0628	permease
JI729_RS26750	COG3275	phosphorelay sensor kinase activity
JI729_RS26755	COG2814	Major facilitator Superfamily
JI729_RS26760	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JI729_RS26765	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
JI729_RS26785	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JI729_RS26790	COG1272	protein, Hemolysin III
JI729_RS26825	COG5002	protein histidine kinase activity
JI729_RS26840	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JI729_RS26845	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JI729_RS26850	COG4853	Protein conserved in bacteria
JI729_RS26860	COG5002	protein histidine kinase activity
JI729_RS26865	COG0745	RESPONSE REGULATOR receiver
JI729_RS26895	COG0305	Participates in initiation and elongation during chromosome replication
JI729_RS26905	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
JI729_RS26910	COG4241	membrane
JI729_RS26930	COG0012	GTP binding
JI729_RS26935	COG4481	Protein conserved in bacteria
JI729_RS26940	COG0668	transmembrane transport
JI729_RS26950	COG1475	DNA binding
JI729_RS26955	COG1192	Involved in chromosome partitioning
JI729_RS26980	COG1847	R3H domain protein
JI729_RS26995	COG0230	Belongs to the bacterial ribosomal protein bL34 family