KS08_RS00005 SM00382 ATPases associated with a variety of cellular activities KS08_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain KS08_RS00010 SM00480 DNA polymerase III beta subunit KS08_RS00030 SM00387 Histidine kinase-like ATPases KS08_RS00030 SM00433 TopoisomeraseII KS08_RS00035 SM00434 DNA Topoisomerase IV KS08_RS00070 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS00070 SM01240 KS08_RS00070 KS08_RS00075 SM00936 Penicillin-binding protein 5, C-terminal domain KS08_RS00115 SM00257 Lysin motif KS08_RS00115 SM00636 KS08_RS00115 KS08_RS00130 SM00382 ATPases associated with a variety of cellular activities KS08_RS00140 SM00493 KS08_RS00140 KS08_RS00235 SM00465 GIY-YIG type nucleases (URI domain) KS08_RS00245 SM00966 SpoVT / AbrB like domain KS08_RS00260 SM01208 KS08_RS00260 KS08_RS00265 SM00493 KS08_RS00265 KS08_RS00270 SM00650 Ribosomal RNA adenine dimethylases KS08_RS00315 SM01400 KS08_RS00315 KS08_RS00335 SM00487 DEAD-like helicases superfamily KS08_RS00335 SM00490 helicase superfamily c-terminal domain KS08_RS00335 SM00982 KS08_RS00335 KS08_RS00335 SM01058 CarD-like/TRCF domain KS08_RS00340 SM00966 SpoVT / AbrB like domain KS08_RS00355 SM00363 S4 RNA-binding domain KS08_RS00375 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_RS00390 SM00331 Sigma factor PP2C-like phosphatases KS08_RS00390 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain KS08_RS00400 SM00220 Serine/Threonine protein kinases, catalytic domain KS08_RS00405 SM00977 TilS substrate C-terminal domain KS08_RS00415 SM00382 ATPases associated with a variety of cellular activities KS08_RS00460 SM00905 Dihydroneopterin aldolase KS08_RS00470 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS00515 SM00382 ATPases associated with a variety of cellular activities KS08_RS00515 SM01086 C-terminal, D2-small domain, of ClpB protein KS08_RS00520 SM00382 ATPases associated with a variety of cellular activities KS08_RS00530 SM00670 Large family of predicted nucleotide-binding domains KS08_RS00555 SM00840 KS08_RS00555 KS08_RS00560 SM00535 Ribonuclease III family KS08_RS00565 SM00967 RNA 2'-O ribose methyltransferase substrate binding KS08_RS00590 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. KS08_RS00590 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. KS08_RS00595 SM00649 Ribosomal protein L11/L12 KS08_RS00625 SM00663 RNA polymerase I subunit A N-terminus KS08_RS00645 SM00838 Elongation factor G C-terminus KS08_RS00645 SM00889 Elongation factor G, domain IV KS08_RS00660 SM01403 KS08_RS00660 KS08_RS00680 SM01382 KS08_RS00680 KS08_RS00680 SM01383 KS08_RS00680 KS08_RS00695 SM00322 K homology RNA-binding domain KS08_RS00715 SM01374 KS08_RS00715 KS08_RS00720 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. KS08_RS00775 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_RS00795 SM00662 RNA polymerases D KS08_RS00805 SM00382 ATPases associated with a variety of cellular activities KS08_RS00810 SM00382 ATPases associated with a variety of cellular activities KS08_RS00845 SM00646 KS08_RS00845 KS08_RS00860 SM01251 KS08_RS00860 KS08_RS00900 SM00829 Enoylreductase KS08_RS00935 SM00342 helix_turn_helix, arabinose operon control protein KS08_RS01070 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS01090 SM00421 helix_turn_helix, Lux Regulon KS08_RS01090 SM00448 cheY-homologous receiver domain KS08_RS01095 SM00382 ATPases associated with a variety of cellular activities KS08_RS01170 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS01205 SM00450 Rhodanese Homology Domain KS08_RS01240 SM00387 Histidine kinase-like ATPases KS08_RS01245 SM00448 cheY-homologous receiver domain KS08_RS01375 SM00028 Tetratricopeptide repeats KS08_RS01385 SM00642 Alpha-amylase domain KS08_RS01405 SM00382 ATPases associated with a variety of cellular activities KS08_RS01455 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS01455 SM00382 ATPases associated with a variety of cellular activities KS08_RS01500 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS01600 SM00833 Cobalamin synthesis protein cobW C-terminal domain KS08_RS01640 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family KS08_RS01655 SM00823 Phosphopantetheine attachment site KS08_RS01660 SM00823 Phosphopantetheine attachment site KS08_RS01665 SM00823 Phosphopantetheine attachment site KS08_RS01690 SM00382 ATPases associated with a variety of cellular activities KS08_RS01700 SM00062 Bacterial periplasmic substrate-binding proteins KS08_RS01735 SM00710 Parallel beta-helix repeats KS08_RS01770 SM00062 Bacterial periplasmic substrate-binding proteins KS08_RS01780 SM00382 ATPases associated with a variety of cellular activities KS08_RS01795 SM00382 ATPases associated with a variety of cellular activities KS08_RS01805 SM00448 cheY-homologous receiver domain KS08_RS01805 SM00862 Transcriptional regulatory protein, C terminal KS08_RS01810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS01810 SM00387 Histidine kinase-like ATPases KS08_RS01810 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS01815 SM00028 Tetratricopeptide repeats KS08_RS01845 SM00382 ATPases associated with a variety of cellular activities KS08_RS01875 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor KS08_RS01880 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS01915 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_RS01965 SM00796 Allophanate hydrolase subunit 1 KS08_RS01970 SM00797 Allophanate hydrolase subunit 2 KS08_RS01975 SM00346 helix_turn_helix isocitrate lyase regulation KS08_RS02045 SM00344 helix_turn_helix ASNC type KS08_RS02050 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain KS08_RS02050 SM00437 Bacterial DNA topoisomerase I DNA-binding domain KS08_RS02050 SM00493 KS08_RS02050 KS08_RS02060 SM00267 diguanylate cyclase KS08_RS02095 SM00257 Lysin motif KS08_RS02115 SM00028 Tetratricopeptide repeats KS08_RS02190 SM00091 PAS domain KS08_RS02190 SM00387 Histidine kinase-like ATPases KS08_RS02195 SM00448 cheY-homologous receiver domain KS08_RS02210 SM00382 ATPases associated with a variety of cellular activities KS08_RS02255 SM00487 DEAD-like helicases superfamily KS08_RS02255 SM00490 helicase superfamily c-terminal domain KS08_RS02285 SM01005 Alanine racemase, C-terminal domain KS08_RS02310 SM00387 Histidine kinase-like ATPases KS08_RS02315 SM00331 Sigma factor PP2C-like phosphatases KS08_RS02335 SM00331 Sigma factor PP2C-like phosphatases KS08_RS02335 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain KS08_RS02340 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_RS02340 SM00732 Likely ribonuclease with RNase H fold. KS08_RS02345 SM00731 SprT homologues. KS08_RS02395 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS02405 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS02445 SM00357 Cold shock protein domain KS08_RS02465 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS02515 SM00342 helix_turn_helix, arabinose operon control protein KS08_RS02515 SM00871 Bacterial transcription activator, effector binding domain KS08_RS02540 SM00829 Enoylreductase KS08_RS02545 SM00422 helix_turn_helix, mercury resistance KS08_RS02555 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS02580 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS02620 SM00382 ATPases associated with a variety of cellular activities KS08_RS02645 SM00825 Beta-ketoacyl synthase KS08_RS02650 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS02665 SM00422 helix_turn_helix, mercury resistance KS08_RS02685 SM01329 KS08_RS02685 KS08_RS02690 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS02690 SM00895 KS08_RS02690 KS08_RS02720 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS02720 SM00866 KS08_RS02720 KS08_RS02725 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS02725 SM00895 KS08_RS02725 KS08_RS02765 SM00829 Enoylreductase KS08_RS02835 SM00382 ATPases associated with a variety of cellular activities KS08_RS02845 SM00881 CoA binding domain KS08_RS02870 SM00883 Chaperonin 10 Kd subunit KS08_RS02895 SM00028 Tetratricopeptide repeats KS08_RS02895 SM00382 ATPases associated with a variety of cellular activities KS08_RS02900 SM00829 Enoylreductase KS08_RS02955 SM00829 Enoylreductase KS08_RS03010 SM00460 Transglutaminase/protease-like homologues KS08_RS03050 SM01001 AIR carboxylase KS08_RS03060 SM00998 Adenylosuccinate lyase C-terminus KS08_RS03075 SM01211 KS08_RS03075 KS08_RS03100 SM00798 AICARFT/IMPCHase bienzyme KS08_RS03100 SM00851 MGS-like domain KS08_RS03105 SM01209 KS08_RS03105 KS08_RS03105 SM01210 KS08_RS03105 KS08_RS03110 SM00344 helix_turn_helix ASNC type KS08_RS03160 SM00278 Helix-hairpin-helix DNA-binding motif class 1 KS08_RS03160 SM00292 breast cancer carboxy-terminal domain KS08_RS03160 SM00532 Ligase N family KS08_RS03195 SM00845 GatB domain KS08_RS03210 SM00046 Diacylglycerol kinase catalytic domain (presumed) KS08_RS03220 SM00382 ATPases associated with a variety of cellular activities KS08_RS03225 SM00382 ATPases associated with a variety of cellular activities KS08_RS03330 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS03400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_RS03415 SM00382 ATPases associated with a variety of cellular activities KS08_RS03420 SM00422 helix_turn_helix, mercury resistance KS08_RS03430 SM00382 ATPases associated with a variety of cellular activities KS08_RS03435 SM00487 DEAD-like helicases superfamily KS08_RS03435 SM00490 helicase superfamily c-terminal domain KS08_RS03440 SM00829 Enoylreductase KS08_RS03455 SM00656 KS08_RS03455 KS08_RS03480 SM00387 Histidine kinase-like ATPases KS08_RS03480 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS03480 SM00448 cheY-homologous receiver domain KS08_RS03485 SM00448 cheY-homologous receiver domain KS08_RS03500 SM00387 Histidine kinase-like ATPases KS08_RS03505 SM00448 cheY-homologous receiver domain KS08_RS03520 SM00849 Metallo-beta-lactamase superfamily KS08_RS03590 SM00642 Alpha-amylase domain KS08_RS03595 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS03595 SM00866 KS08_RS03595 KS08_RS03625 SM00354 helix_turn _helix lactose operon repressor KS08_RS03650 SM00226 Low molecular weight phosphatase family KS08_RS03715 SM00478 endonuclease III KS08_RS03735 SM00382 ATPases associated with a variety of cellular activities KS08_RS03740 SM00220 Serine/Threonine protein kinases, catalytic domain KS08_RS03740 SM01260 KS08_RS03740 KS08_RS03765 SM00861 Transketolase, pyrimidine binding domain KS08_RS03780 SM00382 ATPases associated with a variety of cellular activities KS08_RS03810 SM00382 ATPases associated with a variety of cellular activities KS08_RS03815 SM00382 ATPases associated with a variety of cellular activities KS08_RS03865 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS03930 SM00287 Bacterial SH3 domain homologues KS08_RS03960 SM00478 endonuclease III KS08_RS03960 SM00525 KS08_RS03960 KS08_RS03990 SM00382 ATPases associated with a variety of cellular activities KS08_RS04160 SM00382 ATPases associated with a variety of cellular activities KS08_RS04165 SM00382 ATPases associated with a variety of cellular activities KS08_RS04170 SM01060 KS08_RS04170 KS08_RS04180 SM00382 ATPases associated with a variety of cellular activities KS08_RS04185 SM00062 Bacterial periplasmic substrate-binding proteins KS08_RS04220 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS04235 SM00567 E-Z type HEAT repeats KS08_RS04265 SM00763 PrkA AAA domain KS08_RS04275 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS04305 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS04310 SM00382 ATPases associated with a variety of cellular activities KS08_RS04315 SM00382 ATPases associated with a variety of cellular activities KS08_RS04325 SM00357 Cold shock protein domain KS08_RS04335 SM00267 diguanylate cyclase KS08_RS04390 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS04435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. KS08_RS04435 SM00387 Histidine kinase-like ATPases KS08_RS04440 SM00421 helix_turn_helix, Lux Regulon KS08_RS04440 SM00448 cheY-homologous receiver domain KS08_RS04460 SM00257 Lysin motif KS08_RS04480 SM00098 Alkaline phosphatase homologues KS08_RS04485 SM00257 Lysin motif KS08_RS04530 SM00563 Phosphate acyltransferases KS08_RS04535 SM01091 Transporter associated domain KS08_RS04540 SM00422 helix_turn_helix, mercury resistance KS08_RS04550 SM00825 Beta-ketoacyl synthase KS08_RS04555 SM01091 Transporter associated domain KS08_RS04610 SM00382 ATPases associated with a variety of cellular activities KS08_RS04615 SM00382 ATPases associated with a variety of cellular activities KS08_RS04665 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_RS04700 SM00382 ATPases associated with a variety of cellular activities KS08_RS04720 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_RS04760 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS04790 SM00382 ATPases associated with a variety of cellular activities KS08_RS04870 SM00849 Metallo-beta-lactamase superfamily KS08_RS04910 SM00855 Phosphoglycerate mutase family KS08_RS04930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_RS04945 SM00914 KS08_RS04945 KS08_RS04970 SM00894 Excalibur calcium-binding domain KS08_RS05010 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS05135 SM00342 helix_turn_helix, arabinose operon control protein KS08_RS05140 SM00354 helix_turn _helix lactose operon repressor KS08_RS05160 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS05185 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_RS05195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_RS05195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS05255 SM00859 Semialdehyde dehydrogenase, NAD binding domain KS08_RS05275 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain KS08_RS05280 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KS08_RS05280 SM01209 KS08_RS05280 KS08_RS05330 SM00825 Beta-ketoacyl synthase KS08_RS05340 SM00382 ATPases associated with a variety of cellular activities KS08_RS05345 SM00382 ATPases associated with a variety of cellular activities KS08_RS05390 SM00382 ATPases associated with a variety of cellular activities KS08_RS05395 SM00382 ATPases associated with a variety of cellular activities KS08_RS05455 SM01118 KS08_RS05455 KS08_RS05465 SM00954 Region found in RelA / SpoT proteins KS08_RS05590 SM00849 Metallo-beta-lactamase superfamily KS08_RS05600 SM00382 ATPases associated with a variety of cellular activities KS08_RS05605 SM00966 SpoVT / AbrB like domain KS08_RS05655 SM00318 Staphylococcal nuclease homologues KS08_RS05655 SM00894 Excalibur calcium-binding domain KS08_RS05660 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS05665 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS05715 SM00382 ATPases associated with a variety of cellular activities KS08_RS05770 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain KS08_RS05885 SM00257 Lysin motif KS08_RS05945 SM00644 KS08_RS05945 KS08_RS05965 SM00860 SMI1 / KNR4 family KS08_RS06005 SM00860 SMI1 / KNR4 family KS08_RS06075 SM00612 KS08_RS06075 KS08_RS06105 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS06130 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_RS06130 SM01134 KS08_RS06130 KS08_RS06145 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS06165 SM00926 Molybdopterin oxidoreductase Fe4S4 domain KS08_RS06165 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KS08_RS06200 SM00382 ATPases associated with a variety of cellular activities KS08_RS06230 SM00354 helix_turn _helix lactose operon repressor KS08_RS06240 SM00448 cheY-homologous receiver domain KS08_RS06240 SM00862 Transcriptional regulatory protein, C terminal KS08_RS06245 SM00387 Histidine kinase-like ATPases KS08_RS06245 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS06265 SM00028 Tetratricopeptide repeats KS08_RS06275 SM00257 Lysin motif KS08_RS06275 SM00644 KS08_RS06275 KS08_RS06295 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS06310 SM00382 ATPases associated with a variety of cellular activities KS08_RS06400 SM00257 Lysin motif KS08_RS06465 SM00257 Lysin motif KS08_RS06465 SM00644 KS08_RS06465 KS08_RS06510 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_RS06535 SM00382 ATPases associated with a variety of cellular activities KS08_RS06550 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain KS08_RS06560 SM00382 ATPases associated with a variety of cellular activities KS08_RS06600 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase KS08_RS06615 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS06635 SM00028 Tetratricopeptide repeats KS08_RS06650 SM00100 Cyclic nucleotide-monophosphate binding domain KS08_RS06675 SM00382 ATPases associated with a variety of cellular activities KS08_RS06685 SM00257 Lysin motif KS08_RS06685 SM00636 KS08_RS06685 KS08_RS06690 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS06690 SM00924 MgtE intracellular N domain KS08_RS06695 SM00422 helix_turn_helix, mercury resistance KS08_RS06705 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS06720 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen KS08_RS06725 SM00052 Putative diguanylate phosphodiesterase KS08_RS06725 SM00267 diguanylate cyclase KS08_RS06780 SM00091 PAS domain KS08_RS06780 SM00387 Histidine kinase-like ATPases KS08_RS06780 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS06820 SM01007 Class II Aldolase and Adducin N-terminal domain KS08_RS06835 SM00387 Histidine kinase-like ATPases KS08_RS06835 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS06840 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS06855 SM00382 ATPases associated with a variety of cellular activities KS08_RS06855 SM01086 C-terminal, D2-small domain, of ClpB protein KS08_RS06930 SM00354 helix_turn _helix lactose operon repressor KS08_RS06935 SM01061 CAT RNA binding domain KS08_RS06965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_RS06965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS06990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) KS08_RS06990 SM00091 PAS domain KS08_RS06990 SM00387 Histidine kinase-like ATPases KS08_RS06990 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS07000 SM00260 Two component signalling adaptor domain KS08_RS07000 SM00448 cheY-homologous receiver domain KS08_RS07015 SM00257 Lysin motif KS08_RS07035 SM00052 Putative diguanylate phosphodiesterase KS08_RS07130 SM00852 Probable molybdopterin binding domain KS08_RS07160 SM00382 ATPases associated with a variety of cellular activities KS08_RS07170 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_RS07170 SM01134 KS08_RS07170 KS08_RS07195 SM00382 ATPases associated with a variety of cellular activities KS08_RS07215 SM00966 SpoVT / AbrB like domain KS08_RS07220 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) KS08_RS07220 SM00091 PAS domain KS08_RS07220 SM00387 Histidine kinase-like ATPases KS08_RS07220 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS07240 SM00849 Metallo-beta-lactamase superfamily KS08_RS07275 SM00861 Transketolase, pyrimidine binding domain KS08_RS07355 SM00838 Elongation factor G C-terminus KS08_RS07375 SM00670 Large family of predicted nucleotide-binding domains KS08_RS07400 SM00878 Biotin carboxylase C-terminal domain KS08_RS07445 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS07545 SM00740 KS08_RS07545 KS08_RS07550 SM00740 KS08_RS07550 KS08_RS07590 SM00842 Cell division protein FtsA KS08_RS07595 SM00864 Tubulin/FtsZ family, GTPase domain KS08_RS07595 SM00865 Tubulin/FtsZ family, C-terminal domain KS08_RS07620 SM00382 ATPases associated with a variety of cellular activities KS08_RS07655 SM00363 S4 RNA-binding domain KS08_RS07685 SM00363 S4 RNA-binding domain KS08_RS07710 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain KS08_RS07715 SM00851 MGS-like domain KS08_RS07715 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KS08_RS07730 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family KS08_RS07780 SM00642 Alpha-amylase domain KS08_RS07790 SM00831 Cation transporter/ATPase, N-terminus KS08_RS07805 SM00072 Guanylate kinase homologues. KS08_RS07810 SM01409 KS08_RS07810 KS08_RS07820 SM00487 DEAD-like helicases superfamily KS08_RS07820 SM00490 helicase superfamily c-terminal domain KS08_RS07845 SM00331 Sigma factor PP2C-like phosphatases KS08_RS07845 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain KS08_RS07850 SM00220 Serine/Threonine protein kinases, catalytic domain KS08_RS07850 SM00740 KS08_RS07850 KS08_RS07865 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain KS08_RS07885 SM01120 KS08_RS07885 KS08_RS07885 SM01121 KS08_RS07885 KS08_RS07900 SM00487 DEAD-like helicases superfamily KS08_RS07900 SM00490 helicase superfamily c-terminal domain KS08_RS07915 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. KS08_RS07920 SM00822 KS08_RS07920 KS08_RS07930 SM00358 Double-stranded RNA binding motif KS08_RS07930 SM00535 Ribonuclease III family KS08_RS07935 SM00968 SMC proteins Flexible Hinge Domain KS08_RS07940 SM00382 ATPases associated with a variety of cellular activities KS08_RS07940 SM00962 SRP54-type protein, GTPase domain KS08_RS07940 SM00963 SRP54-type protein, helical bundle domain KS08_RS07950 SM00382 ATPases associated with a variety of cellular activities KS08_RS07950 SM00962 SRP54-type protein, GTPase domain KS08_RS07950 SM00963 SRP54-type protein, helical bundle domain KS08_RS08010 SM00881 CoA binding domain KS08_RS08020 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain KS08_RS08020 SM00437 Bacterial DNA topoisomerase I DNA-binding domain KS08_RS08020 SM00493 KS08_RS08020 KS08_RS08040 SM00382 ATPases associated with a variety of cellular activities KS08_RS08040 SM01086 C-terminal, D2-small domain, of ClpB protein KS08_RS08080 SM00382 ATPases associated with a variety of cellular activities KS08_RS08130 SM00448 cheY-homologous receiver domain KS08_RS08165 SM00962 SRP54-type protein, GTPase domain KS08_RS08175 SM00448 cheY-homologous receiver domain KS08_RS08180 SM00073 Histidine Phosphotransfer domain KS08_RS08180 SM00260 Two component signalling adaptor domain KS08_RS08180 SM00387 Histidine kinase-like ATPases KS08_RS08180 SM01231 KS08_RS08180 KS08_RS08185 SM00260 Two component signalling adaptor domain KS08_RS08245 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_RS08255 SM00479 KS08_RS08255 KS08_RS08255 SM00481 DNA polymerase alpha chain like domain KS08_RS08265 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_RS08265 SM00322 K homology RNA-binding domain KS08_RS08300 SM00904 Riboflavin kinase KS08_RS08305 SM01387 KS08_RS08305 KS08_RS08310 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_RS08310 SM00322 K homology RNA-binding domain KS08_RS08340 SM00859 Semialdehyde dehydrogenase, NAD binding domain KS08_RS08350 SM01130 KS08_RS08350 KS08_RS08355 SM00849 Metallo-beta-lactamase superfamily KS08_RS08370 SM00382 ATPases associated with a variety of cellular activities KS08_RS08370 SM00843 KS08_RS08370 KS08_RS08375 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS08375 SM00866 KS08_RS08375 KS08_RS08385 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS08420 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS08430 SM00852 Probable molybdopterin binding domain KS08_RS08435 SM00382 ATPases associated with a variety of cellular activities KS08_RS08445 SM00322 K homology RNA-binding domain KS08_RS08445 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_RS08460 SM00829 Enoylreductase KS08_RS08470 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_RS08485 SM00533 DNA-binding domain of DNA mismatch repair MUTS family KS08_RS08485 SM00534 ATPase domain of DNA mismatch repair MUTS family KS08_RS08490 SM00853 MutL C terminal dimerisation domain KS08_RS08490 SM01340 KS08_RS08490 KS08_RS08495 SM00849 Metallo-beta-lactamase superfamily KS08_RS08500 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. KS08_RS08505 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. KS08_RS08510 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. KS08_RS08535 SM00822 KS08_RS08535 KS08_RS08535 SM00823 Phosphopantetheine attachment site KS08_RS08535 SM00825 Beta-ketoacyl synthase KS08_RS08535 SM00826 KS08_RS08535 KS08_RS08535 SM01294 KS08_RS08535 KS08_RS08540 SM00822 KS08_RS08540 KS08_RS08540 SM00823 Phosphopantetheine attachment site KS08_RS08540 SM00825 Beta-ketoacyl synthase KS08_RS08540 SM00826 KS08_RS08540 KS08_RS08540 SM01294 KS08_RS08540 KS08_RS08545 SM00822 KS08_RS08545 KS08_RS08545 SM00823 Phosphopantetheine attachment site KS08_RS08545 SM00825 Beta-ketoacyl synthase KS08_RS08545 SM00826 KS08_RS08545 KS08_RS08545 SM01294 KS08_RS08545 KS08_RS08550 SM00822 KS08_RS08550 KS08_RS08550 SM00823 Phosphopantetheine attachment site KS08_RS08550 SM00825 Beta-ketoacyl synthase KS08_RS08550 SM00826 KS08_RS08550 KS08_RS08550 SM01294 KS08_RS08550 KS08_RS08555 SM00823 Phosphopantetheine attachment site KS08_RS08555 SM00825 Beta-ketoacyl synthase KS08_RS08555 SM01294 KS08_RS08555 KS08_RS08670 SM00382 ATPases associated with a variety of cellular activities KS08_RS08685 SM00422 helix_turn_helix, mercury resistance KS08_RS08690 SM01230 KS08_RS08690 KS08_RS08765 SM00829 Enoylreductase KS08_RS08790 SM00829 Enoylreductase KS08_RS08865 SM00710 Parallel beta-helix repeats KS08_RS08910 SM00257 Lysin motif KS08_RS08915 SM00857 Resolvase, N terminal domain KS08_RS08925 SM00861 Transketolase, pyrimidine binding domain KS08_RS08950 SM00448 cheY-homologous receiver domain KS08_RS09015 SM01207 KS08_RS09015 KS08_RS09020 SM00881 CoA binding domain KS08_RS09025 SM00387 Histidine kinase-like ATPases KS08_RS09025 SM00433 TopoisomeraseII KS08_RS09030 SM00434 DNA Topoisomerase IV KS08_RS09070 SM00387 Histidine kinase-like ATPases KS08_RS09070 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS09075 SM00448 cheY-homologous receiver domain KS08_RS09075 SM00862 Transcriptional regulatory protein, C terminal KS08_RS09085 SM00606 Cellulose Binding Domain Type IV KS08_RS09090 SM00823 Phosphopantetheine attachment site KS08_RS09090 SM00824 Thioesterase KS08_RS09095 SM00823 Phosphopantetheine attachment site KS08_RS09100 SM00823 Phosphopantetheine attachment site KS08_RS09100 SM00825 Beta-ketoacyl synthase KS08_RS09105 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. KS08_RS09115 SM00882 Coenzyme A transferase KS08_RS09120 SM00882 Coenzyme A transferase KS08_RS09130 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_RS09130 SM00876 Biotin and Thiamin Synthesis associated domain KS08_RS09190 SM00878 Biotin carboxylase C-terminal domain KS08_RS09215 SM00824 Thioesterase KS08_RS09220 SM00823 Phosphopantetheine attachment site KS08_RS09220 SM01294 KS08_RS09220 KS08_RS09270 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor KS08_RS09275 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain KS08_RS09285 SM00829 Enoylreductase KS08_RS09310 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase KS08_RS09325 SM00822 KS08_RS09325 KS08_RS09355 SM00926 Molybdopterin oxidoreductase Fe4S4 domain KS08_RS09370 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS09390 SM00342 helix_turn_helix, arabinose operon control protein KS08_RS09400 SM00849 Metallo-beta-lactamase superfamily KS08_RS09410 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor KS08_RS09445 SM00257 Lysin motif KS08_RS09450 SM00341 Helicase and RNase D C-terminal KS08_RS09450 SM00487 DEAD-like helicases superfamily KS08_RS09450 SM00490 helicase superfamily c-terminal domain KS08_RS09450 SM00956 KS08_RS09450 KS08_RS09535 SM00849 Metallo-beta-lactamase superfamily KS08_RS09545 SM00861 Transketolase, pyrimidine binding domain KS08_RS09550 SM00327 von Willebrand factor (vWF) type A domain KS08_RS09555 SM00382 ATPases associated with a variety of cellular activities KS08_RS09565 SM00257 Lysin motif KS08_RS09670 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS09670 SM00866 KS08_RS09670 KS08_RS09675 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_RS09675 SM00245 tail specific protease KS08_RS09705 SM00014 Acid phosphatase homologues KS08_RS09750 SM00882 Coenzyme A transferase KS08_RS09755 SM00882 Coenzyme A transferase KS08_RS09770 SM00871 Bacterial transcription activator, effector binding domain KS08_RS09835 SM00857 Resolvase, N terminal domain KS08_RS09855 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS09930 SM00567 E-Z type HEAT repeats KS08_RS09930 SM00932 Scaffold protein Nfu/NifU N terminal KS08_RS09935 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_RS09955 SM00357 Cold shock protein domain KS08_RS09995 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs KS08_RS09995 SM00475 5'-3' exonuclease KS08_RS10115 SM00497 Intron encoded nuclease repeat motif KS08_RS10125 SM00507 HNH nucleases KS08_RS10265 SM00482 DNA polymerase A domain KS08_RS10315 SM00710 Parallel beta-helix repeats KS08_RS10485 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS10635 SM00864 Tubulin/FtsZ family, GTPase domain KS08_RS10660 SM00411 bacterial (prokaryotic) histone like domain KS08_RS10690 SM00305 Hint (Hedgehog/Intein) domain C-terminal region KS08_RS10690 SM00306 Hint (Hedgehog/Intein) domain N-terminal region KS08_RS10795 SM00220 Serine/Threonine protein kinases, catalytic domain KS08_RS10845 SM00710 Parallel beta-helix repeats KS08_RS10850 SM00644 KS08_RS10850 KS08_RS10900 SM00860 SMI1 / KNR4 family KS08_RS10915 SM00860 SMI1 / KNR4 family KS08_RS10920 SM00318 Staphylococcal nuclease homologues KS08_RS10920 SM00894 Excalibur calcium-binding domain KS08_RS10925 SM00857 Resolvase, N terminal domain KS08_RS10945 SM00491 KS08_RS10945 KS08_RS10960 SM00981 KS08_RS10960 KS08_RS10980 SM00487 DEAD-like helicases superfamily KS08_RS10980 SM00490 helicase superfamily c-terminal domain KS08_RS11030 SM00060 Fibronectin type 3 domain KS08_RS11040 SM00478 endonuclease III KS08_RS11040 SM00525 KS08_RS11040 KS08_RS11065 SM00479 KS08_RS11065 KS08_RS11065 SM00487 DEAD-like helicases superfamily KS08_RS11065 SM00491 KS08_RS11065 KS08_RS11105 SM00851 MGS-like domain KS08_RS11125 SM00835 Cupin KS08_RS11160 SM00914 KS08_RS11160 KS08_RS11165 SM00028 Tetratricopeptide repeats KS08_RS11230 SM00138 Methyltransferase, chemotaxis proteins KS08_RS11235 SM00562 KS08_RS11235 KS08_RS11265 SM00411 bacterial (prokaryotic) histone like domain KS08_RS11305 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_RS11340 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KS08_RS11360 SM00257 Lysin motif KS08_RS11370 SM00487 DEAD-like helicases superfamily KS08_RS11370 SM00490 helicase superfamily c-terminal domain KS08_RS11405 SM00091 PAS domain KS08_RS11405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS11405 SM00387 Histidine kinase-like ATPases KS08_RS11405 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS11410 SM00448 cheY-homologous receiver domain KS08_RS11410 SM00862 Transcriptional regulatory protein, C terminal KS08_RS11430 SM00363 S4 RNA-binding domain KS08_RS11565 SM00387 Histidine kinase-like ATPases KS08_RS11575 SM00936 Penicillin-binding protein 5, C-terminal domain KS08_RS11620 SM00919 Malic enzyme, NAD binding domain KS08_RS11620 SM01274 KS08_RS11620 KS08_RS11635 SM00870 KS08_RS11635 KS08_RS11640 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS11730 SM00849 Metallo-beta-lactamase superfamily KS08_RS11780 SM01350 KS08_RS11780 KS08_RS11825 SM00382 ATPases associated with a variety of cellular activities KS08_RS11835 SM00062 Bacterial periplasmic substrate-binding proteins KS08_RS11835 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. KS08_RS11845 SM00046 Diacylglycerol kinase catalytic domain (presumed) KS08_RS11855 SM00861 Transketolase, pyrimidine binding domain KS08_RS11875 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KS08_RS11885 SM00091 PAS domain KS08_RS11885 SM00382 ATPases associated with a variety of cellular activities KS08_RS11930 SM00646 KS08_RS11930 KS08_RS11945 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS11965 SM01005 Alanine racemase, C-terminal domain KS08_RS11970 SM00448 cheY-homologous receiver domain KS08_RS11975 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_RS11990 SM00363 S4 RNA-binding domain KS08_RS11995 SM00861 Transketolase, pyrimidine binding domain KS08_RS12030 SM00878 Biotin carboxylase C-terminal domain KS08_RS12075 SM00382 ATPases associated with a variety of cellular activities KS08_RS12085 SM00841 Elongation factor P, C-terminal KS08_RS12085 SM01185 KS08_RS12085 KS08_RS12115 SM00529 Helix-turn-helix diphteria tox regulatory element KS08_RS12125 SM00450 Rhodanese Homology Domain KS08_RS12145 SM00487 DEAD-like helicases superfamily KS08_RS12145 SM00490 helicase superfamily c-terminal domain KS08_RS12160 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS12220 SM00382 ATPases associated with a variety of cellular activities KS08_RS12230 SM01091 Transporter associated domain KS08_RS12255 SM00849 Metallo-beta-lactamase superfamily KS08_RS12275 SM00631 KS08_RS12275 KS08_RS12310 SM00382 ATPases associated with a variety of cellular activities KS08_RS12315 SM00382 ATPases associated with a variety of cellular activities KS08_RS12360 SM00257 Lysin motif KS08_RS12395 SM00518 AP endonuclease family 2 KS08_RS12400 SM00487 DEAD-like helicases superfamily KS08_RS12400 SM00490 helicase superfamily c-terminal domain KS08_RS12435 SM00400 zinc finger KS08_RS12435 SM00493 KS08_RS12435 KS08_RS12450 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS12490 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_RS12540 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_RS12555 SM00271 DnaJ molecular chaperone homology domain KS08_RS12575 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_RS12580 SM00838 Elongation factor G C-terminus KS08_RS12615 SM00849 Metallo-beta-lactamase superfamily KS08_RS12625 SM00278 Helix-hairpin-helix DNA-binding motif class 1 KS08_RS12645 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_RS12655 SM01103 KS08_RS12655 KS08_RS12690 SM00644 KS08_RS12690 KS08_RS12785 SM00849 Metallo-beta-lactamase superfamily KS08_RS12830 SM00926 Molybdopterin oxidoreductase Fe4S4 domain KS08_RS12830 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KS08_RS12915 SM00732 Likely ribonuclease with RNase H fold. KS08_RS12925 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain KS08_RS12935 SM00382 ATPases associated with a variety of cellular activities KS08_RS12940 SM00062 Bacterial periplasmic substrate-binding proteins KS08_RS12940 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. KS08_RS12965 SM00382 ATPases associated with a variety of cellular activities KS08_RS12970 SM00028 Tetratricopeptide repeats KS08_RS12990 SM00382 ATPases associated with a variety of cellular activities KS08_RS13015 SM00287 Bacterial SH3 domain homologues KS08_RS13015 SM00646 KS08_RS13015 KS08_RS13025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_RS13025 SM00954 Region found in RelA / SpoT proteins KS08_RS13075 SM01323 KS08_RS13075 KS08_RS13095 SM00382 ATPases associated with a variety of cellular activities KS08_RS13100 SM00278 Helix-hairpin-helix DNA-binding motif class 1 KS08_RS13115 SM00257 Lysin motif KS08_RS13160 SM01317 KS08_RS13160 KS08_RS13255 SM00257 Lysin motif KS08_RS13265 SM01004 Delta-aminolevulinic acid dehydratase KS08_RS13300 SM00382 ATPases associated with a variety of cellular activities KS08_RS13300 SM00464 Found in ATP-dependent protease La (LON) KS08_RS13305 SM00382 ATPases associated with a variety of cellular activities KS08_RS13310 SM00382 ATPases associated with a variety of cellular activities KS08_RS13310 SM00994 ClpX C4-type zinc finger KS08_RS13310 SM01086 C-terminal, D2-small domain, of ClpB protein KS08_RS13335 SM01329 KS08_RS13335 KS08_RS13340 SM00917 LeuA allosteric (dimerisation) domain KS08_RS13395 SM00909 Sporulation and spore germination KS08_RS13405 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS13410 SM00421 helix_turn_helix, Lux Regulon KS08_RS13445 SM00465 GIY-YIG type nucleases (URI domain) KS08_RS13455 SM00813 Alpha-L-arabinofuranosidase C-terminus KS08_RS13460 SM00893 Electron transfer flavoprotein domain KS08_RS13465 SM00893 Electron transfer flavoprotein domain KS08_RS13495 SM00463 Small MutS-related domain KS08_RS13495 SM00533 DNA-binding domain of DNA mismatch repair MUTS family KS08_RS13495 SM00534 ATPase domain of DNA mismatch repair MUTS family KS08_RS13500 SM00278 Helix-hairpin-helix DNA-binding motif class 1 KS08_RS13500 SM00481 DNA polymerase alpha chain like domain KS08_RS13500 SM00483 DNA polymerase X family KS08_RS13520 SM00873 B3/4 domain KS08_RS13520 SM00874 tRNA synthetase B5 domain KS08_RS13520 SM00896 Ferredoxin-fold anticodon binding domain KS08_RS13530 SM00967 RNA 2'-O ribose methyltransferase substrate binding KS08_RS13560 SM00813 Alpha-L-arabinofuranosidase C-terminus KS08_RS13590 SM01007 Class II Aldolase and Adducin N-terminal domain KS08_RS13650 SM00448 cheY-homologous receiver domain KS08_RS13650 SM00850 LytTr DNA-binding domain KS08_RS13655 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. KS08_RS13655 SM00387 Histidine kinase-like ATPases KS08_RS13665 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain KS08_RS13680 SM00382 ATPases associated with a variety of cellular activities KS08_RS13700 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KS08_RS13730 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain KS08_RS13730 SM01232 KS08_RS13730 KS08_RS13735 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs KS08_RS13735 SM00474 3'-5' exonuclease KS08_RS13735 SM00475 5'-3' exonuclease KS08_RS13735 SM00482 DNA polymerase A domain KS08_RS13740 SM00091 PAS domain KS08_RS13740 SM00387 Histidine kinase-like ATPases KS08_RS13740 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS13745 SM00448 cheY-homologous receiver domain KS08_RS13745 SM00862 Transcriptional regulatory protein, C terminal KS08_RS13755 SM01329 KS08_RS13755 KS08_RS13805 SM00919 Malic enzyme, NAD binding domain KS08_RS13805 SM01274 KS08_RS13805 KS08_RS13810 SM00481 DNA polymerase alpha chain like domain KS08_RS13840 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS13845 SM00849 Metallo-beta-lactamase superfamily KS08_RS13865 SM00852 Probable molybdopterin binding domain KS08_RS13925 SM00981 KS08_RS13925 KS08_RS13960 SM00267 diguanylate cyclase KS08_RS13965 SM00363 S4 RNA-binding domain KS08_RS13965 SM01390 KS08_RS13965 KS08_RS14015 SM00363 S4 RNA-binding domain KS08_RS14030 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS14050 SM00354 helix_turn _helix lactose operon repressor KS08_RS14055 SM00830 Chorismate mutase type II KS08_RS14080 SM00382 ATPases associated with a variety of cellular activities KS08_RS14080 SM00843 KS08_RS14080 KS08_RS14115 SM00919 Malic enzyme, NAD binding domain KS08_RS14115 SM01274 KS08_RS14115 KS08_RS14120 SM00849 Metallo-beta-lactamase superfamily KS08_RS14140 SM00046 Diacylglycerol kinase catalytic domain (presumed) KS08_RS14175 SM00382 ATPases associated with a variety of cellular activities KS08_RS14180 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_RS14185 SM00363 S4 RNA-binding domain KS08_RS14210 SM00354 helix_turn _helix lactose operon repressor KS08_RS14240 SM00450 Rhodanese Homology Domain KS08_RS14255 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) KS08_RS14255 SM00091 PAS domain KS08_RS14275 SM00382 ATPases associated with a variety of cellular activities KS08_RS14280 SM00387 Histidine kinase-like ATPases KS08_RS14285 SM00448 cheY-homologous receiver domain KS08_RS14285 SM00862 Transcriptional regulatory protein, C terminal KS08_RS14295 SM00382 ATPases associated with a variety of cellular activities KS08_RS14315 SM00382 ATPases associated with a variety of cellular activities KS08_RS14320 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS14335 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_RS14400 SM00382 ATPases associated with a variety of cellular activities KS08_RS14440 SM01234 KS08_RS14440 KS08_RS14445 SM00947 Carbonic anhydrase KS08_RS14465 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain KS08_RS14630 SM00244 prohibitin homologues KS08_RS14675 SM00047 Lysozyme subfamily 2 KS08_RS14700 SM00028 Tetratricopeptide repeats KS08_RS14780 SM00710 Parallel beta-helix repeats KS08_RS14910 SM01040 BRO family, N-terminal domain KS08_RS14960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_RS14960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS14960 SM00319 Homologues of the ligand binding domain of Tar KS08_RS14965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_RS14965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS14965 SM00319 Homologues of the ligand binding domain of Tar KS08_RS14970 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_RS14970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS14970 SM00319 Homologues of the ligand binding domain of Tar KS08_RS14975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_RS14975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS14975 SM00319 Homologues of the ligand binding domain of Tar KS08_RS14995 SM00642 Alpha-amylase domain KS08_RS15000 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS15000 SM01091 Transporter associated domain KS08_RS15055 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_RS15065 SM00344 helix_turn_helix ASNC type KS08_RS15085 SM00387 Histidine kinase-like ATPases KS08_RS15085 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS15090 SM01298 KS08_RS15090 KS08_RS15095 SM00479 KS08_RS15095 KS08_RS15120 SM00091 PAS domain KS08_RS15120 SM00387 Histidine kinase-like ATPases KS08_RS15125 SM00448 cheY-homologous receiver domain KS08_RS15135 SM00382 ATPases associated with a variety of cellular activities KS08_RS15195 SM00421 helix_turn_helix, Lux Regulon KS08_RS15195 SM00448 cheY-homologous receiver domain KS08_RS15200 SM00387 Histidine kinase-like ATPases KS08_RS15225 SM00052 Putative diguanylate phosphodiesterase KS08_RS15265 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_RS15310 SM01002 Alanine dehydrogenase/PNT, C-terminal domain KS08_RS15310 SM01003 Alanine dehydrogenase/PNT, N-terminal domain KS08_RS15320 SM00923 MbtH-like protein KS08_RS15325 SM00823 Phosphopantetheine attachment site KS08_RS15325 SM00824 Thioesterase KS08_RS15400 SM01240 KS08_RS15400 KS08_RS15415 SM00382 ATPases associated with a variety of cellular activities KS08_RS15465 SM00257 Lysin motif KS08_RS15465 SM00644 KS08_RS15465 KS08_RS15490 SM00710 Parallel beta-helix repeats KS08_RS15500 SM00047 Lysozyme subfamily 2 KS08_RS15630 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS15660 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS15775 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_RS15845 SM00382 ATPases associated with a variety of cellular activities KS08_RS15850 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS15850 SM00866 KS08_RS15850 KS08_RS15880 SM00422 helix_turn_helix, mercury resistance KS08_RS15890 SM00752 Horizontally Transferred TransMembrane Domain KS08_RS15905 SM00465 GIY-YIG type nucleases (URI domain) KS08_RS15950 SM00382 ATPases associated with a variety of cellular activities KS08_RS15970 SM00382 ATPases associated with a variety of cellular activities KS08_RS15970 SM00930 KS08_RS15970 KS08_RS15985 SM00493 KS08_RS15985 KS08_RS16035 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS16035 SM00529 Helix-turn-helix diphteria tox regulatory element KS08_RS16050 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS16065 SM00382 ATPases associated with a variety of cellular activities KS08_RS16080 SM00822 KS08_RS16080 KS08_RS16090 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_RS16095 SM00448 cheY-homologous receiver domain KS08_RS16095 SM00862 Transcriptional regulatory protein, C terminal KS08_RS16100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS16100 SM00387 Histidine kinase-like ATPases KS08_RS16100 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS16135 SM00421 helix_turn_helix, Lux Regulon KS08_RS16135 SM00448 cheY-homologous receiver domain KS08_RS16140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS16140 SM00387 Histidine kinase-like ATPases KS08_RS16175 SM00382 ATPases associated with a variety of cellular activities KS08_RS16200 SM00387 Histidine kinase-like ATPases KS08_RS16200 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS16205 SM00448 cheY-homologous receiver domain KS08_RS16205 SM00862 Transcriptional regulatory protein, C terminal KS08_RS16220 SM00835 Cupin KS08_RS16230 SM00382 ATPases associated with a variety of cellular activities KS08_RS16290 SM00421 helix_turn_helix, Lux Regulon KS08_RS16290 SM00448 cheY-homologous receiver domain KS08_RS16300 SM00382 ATPases associated with a variety of cellular activities KS08_RS16410 SM00382 ATPases associated with a variety of cellular activities KS08_RS16425 SM00062 Bacterial periplasmic substrate-binding proteins KS08_RS16430 SM00062 Bacterial periplasmic substrate-binding proteins KS08_RS16460 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_RS16460 SM00357 Cold shock protein domain KS08_RS16460 SM00955 KS08_RS16460 KS08_RS16475 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS16480 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS16485 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS16495 SM00387 Histidine kinase-like ATPases KS08_RS16495 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS16500 SM00448 cheY-homologous receiver domain KS08_RS16500 SM00862 Transcriptional regulatory protein, C terminal KS08_RS16515 SM00382 ATPases associated with a variety of cellular activities KS08_RS16535 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS16535 SM00382 ATPases associated with a variety of cellular activities KS08_RS16560 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_RS16560 SM00382 ATPases associated with a variety of cellular activities KS08_RS16630 SM00984 UDP binding domain KS08_RS16640 SM01192 KS08_RS16640 KS08_RS16640 SM01193 KS08_RS16640 KS08_RS16665 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KS08_RS16680 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS16740 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS16740 SM00895 KS08_RS16740 KS08_RS16835 SM00530 Helix-turn-helix XRE-family like proteins KS08_RS16860 SM00849 Metallo-beta-lactamase superfamily KS08_RS16915 SM00640 Glycosyl hydrolases family 32 KS08_RS16925 SM00354 helix_turn _helix lactose operon repressor KS08_RS16970 SM00947 Carbonic anhydrase KS08_RS17030 SM00028 Tetratricopeptide repeats KS08_RS17035 SM00387 Histidine kinase-like ATPases KS08_RS17035 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS17040 SM00448 cheY-homologous receiver domain KS08_RS17040 SM00862 Transcriptional regulatory protein, C terminal KS08_RS17045 SM00382 ATPases associated with a variety of cellular activities KS08_RS17125 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS17125 SM00866 KS08_RS17125 KS08_RS17165 SM00382 ATPases associated with a variety of cellular activities KS08_RS17170 SM00487 DEAD-like helicases superfamily KS08_RS17170 SM00490 helicase superfamily c-terminal domain KS08_RS17205 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_RS17215 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_RS17215 SM00245 tail specific protease KS08_RS17220 SM00710 Parallel beta-helix repeats KS08_RS17220 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses KS08_RS17230 SM00382 ATPases associated with a variety of cellular activities KS08_RS17245 SM00937 KS08_RS17245 KS08_RS17250 SM00957 SecA DEAD-like domain KS08_RS17250 SM00958 SecA preprotein cross-linking domain KS08_RS17335 SM00487 DEAD-like helicases superfamily KS08_RS17335 SM00490 helicase superfamily c-terminal domain KS08_RS17345 SM00421 helix_turn_helix, Lux Regulon KS08_RS17345 SM00448 cheY-homologous receiver domain KS08_RS17350 SM00387 Histidine kinase-like ATPases KS08_RS17390 SM00984 UDP binding domain KS08_RS17410 SM00646 KS08_RS17410 KS08_RS17440 SM00382 ATPases associated with a variety of cellular activities KS08_RS17475 SM00047 Lysozyme subfamily 2 KS08_RS17475 SM00287 Bacterial SH3 domain homologues KS08_RS17530 SM00854 Bacterial capsule synthesis protein PGA_cap KS08_RS17560 SM00354 helix_turn _helix lactose operon repressor KS08_RS17575 SM00382 ATPases associated with a variety of cellular activities KS08_RS17590 SM00287 Bacterial SH3 domain homologues KS08_RS17640 SM00903 Flavin reductase like domain KS08_RS17655 SM00344 helix_turn_helix ASNC type KS08_RS17680 SM00860 SMI1 / KNR4 family KS08_RS17715 SM00984 UDP binding domain KS08_RS17745 SM00487 DEAD-like helicases superfamily KS08_RS17745 SM00490 helicase superfamily c-terminal domain KS08_RS17755 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_RS17755 SM01134 KS08_RS17755 KS08_RS17810 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS17840 SM00938 Nitrogen regulatory protein P-II KS08_RS17850 SM00014 Acid phosphatase homologues KS08_RS17880 SM00155 Phospholipase D. Active site motifs. KS08_RS17930 SM00028 Tetratricopeptide repeats KS08_RS17935 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_RS17945 SM00327 von Willebrand factor (vWF) type A domain KS08_RS17950 SM00327 von Willebrand factor (vWF) type A domain KS08_RS17985 SM00382 ATPases associated with a variety of cellular activities KS08_RS18045 SM00226 Low molecular weight phosphatase family KS08_RS18085 SM00937 KS08_RS18085 KS08_RS18105 SM00919 Malic enzyme, NAD binding domain KS08_RS18105 SM01274 KS08_RS18105 KS08_RS18120 SM00357 Cold shock protein domain KS08_RS18120 SM00382 ATPases associated with a variety of cellular activities KS08_RS18120 SM00959 Rho termination factor, N-terminal domain KS08_RS18145 SM00448 cheY-homologous receiver domain KS08_RS18170 SM00155 Phospholipase D. Active site motifs. KS08_RS18185 SM00382 ATPases associated with a variety of cellular activities KS08_RS18190 SM00155 Phospholipase D. Active site motifs. KS08_RS18210 SM00926 Molybdopterin oxidoreductase Fe4S4 domain KS08_RS18225 SM00100 Cyclic nucleotide-monophosphate binding domain KS08_RS18225 SM00419 helix_turn_helix, cAMP Regulatory protein KS08_RS18235 SM00836 DALR anticodon binding domain KS08_RS18235 SM01016 Arginyl tRNA synthetase N terminal dom KS08_RS18255 SM00028 Tetratricopeptide repeats KS08_RS18300 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS18315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_RS18455 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KS08_RS18495 SM00858 KS08_RS18495 KS08_RS18540 SM00986 Uracil DNA glycosylase superfamily KS08_RS18540 SM00987 UreE urease accessory protein, C-terminal domain KS08_RS18565 SM00640 Glycosyl hydrolases family 32 KS08_RS18575 SM01061 CAT RNA binding domain KS08_RS18610 SM00886 Stress responsive A/B Barrel Domain KS08_RS18745 SM00422 helix_turn_helix, mercury resistance KS08_RS18755 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase KS08_RS18780 SM00954 Region found in RelA / SpoT proteins KS08_RS18800 SM00656 KS08_RS18800 KS08_RS18895 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain KS08_RS18905 SM01133 KS08_RS18905 KS08_RS18960 SM00382 ATPases associated with a variety of cellular activities KS08_RS18965 SM00387 Histidine kinase-like ATPases KS08_RS18970 SM00448 cheY-homologous receiver domain KS08_RS18970 SM00862 Transcriptional regulatory protein, C terminal KS08_RS19025 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_RS19025 SM01134 KS08_RS19025 KS08_RS19040 SM00387 Histidine kinase-like ATPases KS08_RS19050 SM00421 helix_turn_helix, Lux Regulon KS08_RS19050 SM00448 cheY-homologous receiver domain KS08_RS19075 SM00564 beta-propeller repeat KS08_RS19085 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor KS08_RS19130 SM00871 Bacterial transcription activator, effector binding domain KS08_RS19155 SM01092 CO dehydrogenase flavoprotein C-terminal domain KS08_RS19160 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KS08_RS19230 SM00028 Tetratricopeptide repeats KS08_RS19255 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor KS08_RS19260 SM00382 ATPases associated with a variety of cellular activities KS08_RS19275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS19275 SM00387 Histidine kinase-like ATPases KS08_RS19275 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS19280 SM00448 cheY-homologous receiver domain KS08_RS19280 SM00862 Transcriptional regulatory protein, C terminal KS08_RS19290 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_RS19295 SM00849 Metallo-beta-lactamase superfamily KS08_RS19310 SM00091 PAS domain KS08_RS19310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_RS19310 SM00387 Histidine kinase-like ATPases KS08_RS19310 SM00388 His Kinase A (phosphoacceptor) domain KS08_RS19315 SM00448 cheY-homologous receiver domain KS08_RS19315 SM00862 Transcriptional regulatory protein, C terminal KS08_RS19345 SM00788 Adenylosuccinate synthetase KS08_RS19355 SM00382 ATPases associated with a variety of cellular activities KS08_RS19405 SM00267 diguanylate cyclase KS08_RS19430 SM01131 KS08_RS19430 KS08_RS19445 SM00640 Glycosyl hydrolases family 32 KS08_RS19450 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS19450 SM00895 KS08_RS19450 KS08_RS19475 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS19485 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_RS19500 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_RS19540 SM00354 helix_turn _helix lactose operon repressor KS08_RS19555 SM00342 helix_turn_helix, arabinose operon control protein KS08_RS19580 SM00926 Molybdopterin oxidoreductase Fe4S4 domain KS08_RS19605 SM00470 ParB-like nuclease domain KS08_RS19615 SM00470 ParB-like nuclease domain KS08_RS19625 SM01228 KS08_RS19625 KS08_RS19635 SM00393 Putative single-stranded nucleic acids-binding domain KS08_RS19635 SM01245 KS08_RS19635