CLD04_RS00070	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CLD04_RS00070	PWY-6596	adenosine nucleotides degradation I
CLD04_RS00070	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS00075	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLD04_RS00075	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLD04_RS00080	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CLD04_RS00085	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CLD04_RS00095	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CLD04_RS00205	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CLD04_RS00205	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLD04_RS00205	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLD04_RS00205	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CLD04_RS00205	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLD04_RS00205	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLD04_RS00245	PWY-2201	folate transformations I
CLD04_RS00295	PWY-7560	methylerythritol phosphate pathway II
CLD04_RS00315	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CLD04_RS00315	PWY-5667	CDP-diacylglycerol biosynthesis I
CLD04_RS00315	PWY-6453	stigma estolide biosynthesis
CLD04_RS00315	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CLD04_RS00315	PWY-7587	oleate biosynthesis III (cyanobacteria)
CLD04_RS00330	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CLD04_RS00415	PWY-6599	guanine and guanosine salvage II
CLD04_RS00415	PWY-6609	adenine and adenosine salvage III
CLD04_RS00415	PWY-6610	adenine and adenosine salvage IV
CLD04_RS00415	PWY-6620	guanine and guanosine salvage
CLD04_RS00425	PWY-3961	phosphopantothenate biosynthesis II
CLD04_RS00440	PWY-6936	seleno-amino acid biosynthesis
CLD04_RS00445	PWY-5958	acridone alkaloid biosynthesis
CLD04_RS00445	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CLD04_RS00445	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CLD04_RS00450	PWY-5958	acridone alkaloid biosynthesis
CLD04_RS00450	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CLD04_RS00450	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CLD04_RS00460	PWY-6614	tetrahydrofolate biosynthesis
CLD04_RS00465	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CLD04_RS00465	PWY-6148	tetrahydromethanopterin biosynthesis
CLD04_RS00465	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CLD04_RS00465	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CLD04_RS00470	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CLD04_RS00470	PWY-6148	tetrahydromethanopterin biosynthesis
CLD04_RS00470	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CLD04_RS00470	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CLD04_RS00470	PWY-7852	CLD04_RS00470
CLD04_RS00470	PWY-7853	CLD04_RS00470
CLD04_RS00600	PWY-7560	methylerythritol phosphate pathway II
CLD04_RS00605	PWY-7560	methylerythritol phosphate pathway II
CLD04_RS00610	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLD04_RS00620	PWY-6936	seleno-amino acid biosynthesis
CLD04_RS00620	PWY-7274	D-cycloserine biosynthesis
CLD04_RS00840	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS00845	PWY-7799	CLD04_RS00845
CLD04_RS00845	PWY-7800	CLD04_RS00845
CLD04_RS01515	PWY-6749	CMP-legionaminate biosynthesis I
CLD04_RS01525	PWY-6749	CMP-legionaminate biosynthesis I
CLD04_RS01560	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CLD04_RS01560	PWY-5743	3-hydroxypropanoate cycle
CLD04_RS01560	PWY-5744	glyoxylate assimilation
CLD04_RS01560	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CLD04_RS01560	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS01560	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CLD04_RS01560	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CLD04_RS01710	PWY-5669	phosphatidylethanolamine biosynthesis I
CLD04_RS01720	PWY-5669	phosphatidylethanolamine biosynthesis I
CLD04_RS01750	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CLD04_RS01750	PWY-6855	chitin degradation I (archaea)
CLD04_RS01750	PWY-6906	chitin derivatives degradation
CLD04_RS01765	PWY-5057	L-valine degradation II
CLD04_RS01765	PWY-5076	L-leucine degradation III
CLD04_RS01765	PWY-5078	L-isoleucine degradation II
CLD04_RS01765	PWY-5101	L-isoleucine biosynthesis II
CLD04_RS01765	PWY-5103	L-isoleucine biosynthesis III
CLD04_RS01765	PWY-5104	L-isoleucine biosynthesis IV
CLD04_RS01765	PWY-5108	L-isoleucine biosynthesis V
CLD04_RS01765	PWY-7767	CLD04_RS01765
CLD04_RS01805	PWY-6486	D-galacturonate degradation II
CLD04_RS01805	PWY-6497	D-galactarate degradation II
CLD04_RS01805	PWY-6499	D-glucarate degradation II
CLD04_RS01805	PWY-6501	D-glucuronate degradation II
CLD04_RS01820	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS01820	PWY-1622	formaldehyde assimilation I (serine pathway)
CLD04_RS01820	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLD04_RS01820	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS01820	PWY-5723	Rubisco shunt
CLD04_RS01820	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS01820	PWY-6499	D-glucarate degradation II
CLD04_RS01820	PWY-6886	1-butanol autotrophic biosynthesis
CLD04_RS01820	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS01820	PWY-7003	glycerol degradation to butanol
CLD04_RS01820	PWY-7124	ethylene biosynthesis V (engineered)
CLD04_RS01820	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CLD04_RS01900	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CLD04_RS01900	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CLD04_RS01910	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS01910	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS01930	PWY-4983	L-citrulline-nitric oxide cycle
CLD04_RS01930	PWY-4984	urea cycle
CLD04_RS01930	PWY-5	canavanine biosynthesis
CLD04_RS01930	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS01930	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS02000	PWY-6857	retinol biosynthesis
CLD04_RS02175	PWY-5481	pyruvate fermentation to lactate
CLD04_RS02175	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS02215	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLD04_RS02240	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CLD04_RS02240	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CLD04_RS02245	PWY-6853	ethylene biosynthesis II (microbes)
CLD04_RS02275	PWY-101	photosynthesis light reactions
CLD04_RS02280	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLD04_RS02280	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CLD04_RS02280	PWY-5194	siroheme biosynthesis
CLD04_RS02280	PWY-5196	factor 430 biosynthesis
CLD04_RS02280	PWY-5441	S-methyl-L-methionine cycle
CLD04_RS02280	PWY-702	L-methionine biosynthesis II
CLD04_RS02280	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLD04_RS02290	PWY-6683	sulfate reduction III (assimilatory)
CLD04_RS02300	PWY-6683	sulfate reduction III (assimilatory)
CLD04_RS02310	PWY-5663	tetrahydrobiopterin biosynthesis I
CLD04_RS02310	PWY-5664	tetrahydrobiopterin biosynthesis II
CLD04_RS02310	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CLD04_RS02310	PWY-6703	preQ<sub>0</sub> biosynthesis
CLD04_RS02310	PWY-6983	tetrahydrobiopterin biosynthesis III
CLD04_RS02310	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CLD04_RS02310	PWY-7852	CLD04_RS02310
CLD04_RS02375	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLD04_RS02375	PWY-5686	UMP biosynthesis
CLD04_RS02375	PWY-7790	CLD04_RS02375
CLD04_RS02375	PWY-7791	CLD04_RS02375
CLD04_RS02375	PWY-7796	CLD04_RS02375
CLD04_RS02440	PWY-6012	acyl carrier protein metabolism I
CLD04_RS02440	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CLD04_RS02475	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CLD04_RS02475	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CLD04_RS02475	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CLD04_RS02475	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CLD04_RS02475	PWY-6978	plastoquinol-9 biosynthesis II
CLD04_RS02565	PWY-2941	L-lysine biosynthesis II
CLD04_RS02565	PWY-2942	L-lysine biosynthesis III
CLD04_RS02565	PWY-5097	L-lysine biosynthesis VI
CLD04_RS02565	PWY-6559	spermidine biosynthesis II
CLD04_RS02565	PWY-6562	norspermidine biosynthesis
CLD04_RS02565	PWY-7153	grixazone biosynthesis
CLD04_RS02660	PWY-5723	Rubisco shunt
CLD04_RS02670	PWY-6531	mannitol cycle
CLD04_RS02690	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CLD04_RS02690	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CLD04_RS02690	PWY-5989	stearate biosynthesis II (bacteria and plants)
CLD04_RS02690	PWY-5994	palmitate biosynthesis I (animals and fungi)
CLD04_RS02690	PWY-6113	superpathway of mycolate biosynthesis
CLD04_RS02690	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CLD04_RS02690	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CLD04_RS02690	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLD04_RS02690	PWY-7663	gondoate biosynthesis (anaerobic)
CLD04_RS02690	PWY-7664	oleate biosynthesis IV (anaerobic)
CLD04_RS02690	PWY-7858	CLD04_RS02690
CLD04_RS02690	PWYG-321	mycolate biosynthesis
CLD04_RS02950	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLD04_RS02950	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLD04_RS02955	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLD04_RS02955	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLD04_RS02985	PWY-6012	acyl carrier protein metabolism I
CLD04_RS02985	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CLD04_RS02995	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLD04_RS03610	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CLD04_RS03610	PWY-5491	diethylphosphate degradation
CLD04_RS03675	PWY-3861	mannitol degradation II
CLD04_RS03675	PWY-3881	mannitol biosynthesis
CLD04_RS03675	PWY-5659	GDP-mannose biosynthesis
CLD04_RS03675	PWY-6992	1,5-anhydrofructose degradation
CLD04_RS03675	PWY-7456	mannan degradation
CLD04_RS03675	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
CLD04_RS03675	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CLD04_RS03680	PWY-7456	mannan degradation
CLD04_RS03725	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CLD04_RS03725	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CLD04_RS03725	PWY-6896	thiamin salvage I
CLD04_RS03725	PWY-6897	thiamin salvage II
CLD04_RS03735	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CLD04_RS03735	PWY-5368	dimorphecolate biosynthesis
CLD04_RS03735	PWY-5995	linoleate biosynthesis I (plants)
CLD04_RS03735	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CLD04_RS03735	PWY-6803	phosphatidylcholine acyl editing
CLD04_RS03735	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CLD04_RS03735	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CLD04_RS03735	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CLD04_RS03735	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CLD04_RS03735	PWY-7470	phosphatidylcholine biosynthesis VII
CLD04_RS03735	PWY-7618	ricinoleate biosynthesis
CLD04_RS03745	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CLD04_RS03745	PWY-5368	dimorphecolate biosynthesis
CLD04_RS03745	PWY-5995	linoleate biosynthesis I (plants)
CLD04_RS03745	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CLD04_RS03745	PWY-6803	phosphatidylcholine acyl editing
CLD04_RS03745	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CLD04_RS03745	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
CLD04_RS03745	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CLD04_RS03745	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CLD04_RS03745	PWY-7470	phosphatidylcholine biosynthesis VII
CLD04_RS03745	PWY-7618	ricinoleate biosynthesis
CLD04_RS03935	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS03970	PWY-6123	inosine-5'-phosphate biosynthesis I
CLD04_RS03970	PWY-7234	inosine-5'-phosphate biosynthesis III
CLD04_RS03980	PWY-6123	inosine-5'-phosphate biosynthesis I
CLD04_RS03980	PWY-6124	inosine-5'-phosphate biosynthesis II
CLD04_RS03980	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS03980	PWY-7234	inosine-5'-phosphate biosynthesis III
CLD04_RS03985	PWY-6123	inosine-5'-phosphate biosynthesis I
CLD04_RS03985	PWY-6124	inosine-5'-phosphate biosynthesis II
CLD04_RS03985	PWY-7234	inosine-5'-phosphate biosynthesis III
CLD04_RS03990	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLD04_RS03990	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CLD04_RS03990	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CLD04_RS03995	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLD04_RS03995	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CLD04_RS03995	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CLD04_RS04000	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLD04_RS04000	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CLD04_RS04000	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CLD04_RS04005	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLD04_RS04005	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CLD04_RS04005	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CLD04_RS04005	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CLD04_RS04010	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLD04_RS04010	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CLD04_RS04010	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CLD04_RS04015	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLD04_RS04015	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CLD04_RS04020	PWY-6123	inosine-5'-phosphate biosynthesis I
CLD04_RS04020	PWY-6124	inosine-5'-phosphate biosynthesis II
CLD04_RS04020	PWY-7234	inosine-5'-phosphate biosynthesis III
CLD04_RS04025	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CLD04_RS04025	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CLD04_RS04025	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CLD04_RS04045	PWY-6610	adenine and adenosine salvage IV
CLD04_RS04110	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CLD04_RS04400	PWY-5451	acetone degradation I (to methylglyoxal)
CLD04_RS04400	PWY-5665	vanillin biosynthesis I
CLD04_RS04400	PWY-6398	melatonin degradation I
CLD04_RS04400	PWY-6992	1,5-anhydrofructose degradation
CLD04_RS04400	PWY-7466	acetone degradation III (to propane-1,2-diol)
CLD04_RS04400	PWY-7826	CLD04_RS04400
CLD04_RS04610	PWY-7799	CLD04_RS04610
CLD04_RS04610	PWY-7800	CLD04_RS04610
CLD04_RS04645	PWY-6619	adenine and adenosine salvage VI
CLD04_RS04790	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CLD04_RS04790	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CLD04_RS04925	PWY-6857	retinol biosynthesis
CLD04_RS05095	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLD04_RS05240	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CLD04_RS05310	PWY-6700	queuosine biosynthesis
CLD04_RS05320	PWY-6004	glycine betaine biosynthesis V (from glycine)
CLD04_RS05500	PWY-4261	glycerol degradation I
CLD04_RS05505	PWY-4261	glycerol degradation I
CLD04_RS05505	PWY-6118	glycerol-3-phosphate shuttle
CLD04_RS05505	PWY-6952	glycerophosphodiester degradation
CLD04_RS05510	PWY-6749	CMP-legionaminate biosynthesis I
CLD04_RS05560	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CLD04_RS05560	PWY-5491	diethylphosphate degradation
CLD04_RS05625	PWY-5667	CDP-diacylglycerol biosynthesis I
CLD04_RS05625	PWY-5981	CDP-diacylglycerol biosynthesis III
CLD04_RS05625	PWY-6453	stigma estolide biosynthesis
CLD04_RS05625	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CLD04_RS05625	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
CLD04_RS05625	PWY-7587	oleate biosynthesis III (cyanobacteria)
CLD04_RS05625	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
CLD04_RS05625	PWY-7782	CLD04_RS05625
CLD04_RS05930	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CLD04_RS05930	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CLD04_RS05930	PWY-7766	CLD04_RS05930
CLD04_RS05940	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CLD04_RS05955	PWY-4381	fatty acid biosynthesis initiation I
CLD04_RS06325	PWY-5340	sulfate activation for sulfonation
CLD04_RS06355	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS06355	PWY-1622	formaldehyde assimilation I (serine pathway)
CLD04_RS06355	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLD04_RS06355	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS06355	PWY-5723	Rubisco shunt
CLD04_RS06355	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS06355	PWY-6886	1-butanol autotrophic biosynthesis
CLD04_RS06355	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS06355	PWY-7003	glycerol degradation to butanol
CLD04_RS06355	PWY-7124	ethylene biosynthesis V (engineered)
CLD04_RS06355	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CLD04_RS06460	PWY-2201	folate transformations I
CLD04_RS06460	PWY-3841	folate transformations II
CLD04_RS06560	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS06560	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS06565	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS06570	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS06570	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS06580	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS06580	PWY-5686	UMP biosynthesis
CLD04_RS06580	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS06580	PWY-7790	CLD04_RS06580
CLD04_RS06580	PWY-7791	CLD04_RS06580
CLD04_RS06585	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS06585	PWY-5686	UMP biosynthesis
CLD04_RS06585	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS06585	PWY-7790	CLD04_RS06585
CLD04_RS06585	PWY-7791	CLD04_RS06585
CLD04_RS06590	PWY-4981	L-proline biosynthesis II (from arginine)
CLD04_RS06590	PWY-4984	urea cycle
CLD04_RS06590	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS06630	PWY-4381	fatty acid biosynthesis initiation I
CLD04_RS06780	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CLD04_RS06780	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CLD04_RS06780	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CLD04_RS06800	PWY-6899	base-degraded thiamin salvage
CLD04_RS06800	PWY-7356	thiamin salvage IV (yeast)
CLD04_RS06805	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CLD04_RS06805	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CLD04_RS06805	PWY-6897	thiamin salvage II
CLD04_RS06805	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CLD04_RS06805	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CLD04_RS06805	PWY-7356	thiamin salvage IV (yeast)
CLD04_RS06805	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CLD04_RS06820	PWY-6891	thiazole biosynthesis II (Bacillus)
CLD04_RS06820	PWY-6892	thiazole biosynthesis I (E. coli)
CLD04_RS06830	PWY-6910	hydroxymethylpyrimidine salvage
CLD04_RS06830	PWY-7356	thiamin salvage IV (yeast)
CLD04_RS06830	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CLD04_RS06835	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CLD04_RS06835	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CLD04_RS06835	PWY-5989	stearate biosynthesis II (bacteria and plants)
CLD04_RS06835	PWY-6113	superpathway of mycolate biosynthesis
CLD04_RS06835	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CLD04_RS06835	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CLD04_RS06835	PWY-7663	gondoate biosynthesis (anaerobic)
CLD04_RS06835	PWY-7664	oleate biosynthesis IV (anaerobic)
CLD04_RS06835	PWY-7858	CLD04_RS06835
CLD04_RS06835	PWYG-321	mycolate biosynthesis
CLD04_RS07150	PWY-6619	adenine and adenosine salvage VI
CLD04_RS07155	PWY-3861	mannitol degradation II
CLD04_RS07155	PWY-3881	mannitol biosynthesis
CLD04_RS07155	PWY-5659	GDP-mannose biosynthesis
CLD04_RS07155	PWY-6992	1,5-anhydrofructose degradation
CLD04_RS07155	PWY-7456	mannan degradation
CLD04_RS07155	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
CLD04_RS07155	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CLD04_RS07265	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLD04_RS07265	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CLD04_RS07265	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLD04_RS07265	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLD04_RS07275	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLD04_RS07275	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CLD04_RS07310	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
CLD04_RS07310	PWY-7248	pectin degradation III
CLD04_RS07330	PWY-7242	D-fructuronate degradation
CLD04_RS07350	PWY-6531	mannitol cycle
CLD04_RS07645	PWY-3341	L-proline biosynthesis III
CLD04_RS07645	PWY-4981	L-proline biosynthesis II (from arginine)
CLD04_RS07645	PWY-6344	L-ornithine degradation II (Stickland reaction)
CLD04_RS07680	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS07680	PWY-1622	formaldehyde assimilation I (serine pathway)
CLD04_RS07680	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLD04_RS07680	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS07680	PWY-5723	Rubisco shunt
CLD04_RS07680	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS07680	PWY-6886	1-butanol autotrophic biosynthesis
CLD04_RS07680	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS07680	PWY-7003	glycerol degradation to butanol
CLD04_RS07680	PWY-7124	ethylene biosynthesis V (engineered)
CLD04_RS07680	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CLD04_RS07745	PWY-2201	folate transformations I
CLD04_RS07745	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS07750	PWY-3341	L-proline biosynthesis III
CLD04_RS07750	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CLD04_RS07755	PWY-3341	L-proline biosynthesis III
CLD04_RS07755	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CLD04_RS07790	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CLD04_RS07790	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CLD04_RS07790	PWY-6936	seleno-amino acid biosynthesis
CLD04_RS07790	PWY-702	L-methionine biosynthesis II
CLD04_RS07985	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CLD04_RS07985	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CLD04_RS07990	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
CLD04_RS08005	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CLD04_RS08005	PWY-5532	adenosine nucleotides degradation IV
CLD04_RS08005	PWY-5723	Rubisco shunt
CLD04_RS08010	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CLD04_RS08015	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CLD04_RS08015	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLD04_RS08015	PWY-6416	quinate degradation II
CLD04_RS08015	PWY-6707	gallate biosynthesis
CLD04_RS08020	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CLD04_RS08020	PWY-5389	3-methylthiopropanoate biosynthesis
CLD04_RS08070	PWY-6703	preQ<sub>0</sub> biosynthesis
CLD04_RS08080	PWY-6703	preQ<sub>0</sub> biosynthesis
CLD04_RS08085	PWY-6700	queuosine biosynthesis
CLD04_RS08155	PWY-7799	CLD04_RS08155
CLD04_RS08155	PWY-7800	CLD04_RS08155
CLD04_RS08315	PWY-2941	L-lysine biosynthesis II
CLD04_RS08320	PWY-2941	L-lysine biosynthesis II
CLD04_RS08365	PWY-5964	guanylyl molybdenum cofactor biosynthesis
CLD04_RS08365	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
CLD04_RS08375	PWY-6823	molybdenum cofactor biosynthesis
CLD04_RS08385	PWY-6823	molybdenum cofactor biosynthesis
CLD04_RS08435	PWY-6619	adenine and adenosine salvage VI
CLD04_RS08455	PWY-6654	phosphopantothenate biosynthesis III
CLD04_RS08455	PWY-7862	CLD04_RS08455
CLD04_RS08495	PWY-6610	adenine and adenosine salvage IV
CLD04_RS08545	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CLD04_RS08545	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CLD04_RS08675	PWY-5750	itaconate biosynthesis
CLD04_RS08675	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS08675	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CLD04_RS08695	PWY-3781	aerobic respiration I (cytochrome c)
CLD04_RS08695	PWY-4521	arsenite oxidation I (respiratory)
CLD04_RS08695	PWY-6692	Fe(II) oxidation
CLD04_RS08695	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CLD04_RS08705	PWY-3781	aerobic respiration I (cytochrome c)
CLD04_RS08705	PWY-4521	arsenite oxidation I (respiratory)
CLD04_RS08705	PWY-6692	Fe(II) oxidation
CLD04_RS08705	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CLD04_RS08755	PWY-7851	CLD04_RS08755
CLD04_RS08805	PWY-6654	phosphopantothenate biosynthesis III
CLD04_RS08805	PWY-7862	CLD04_RS08805
CLD04_RS08820	PWY-2201	folate transformations I
CLD04_RS08845	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLD04_RS08845	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLD04_RS08845	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLD04_RS08850	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLD04_RS08850	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLD04_RS08860	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLD04_RS08860	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CLD04_RS08860	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLD04_RS08860	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLD04_RS08865	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLD04_RS08865	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLD04_RS09015	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLD04_RS09060	PWY-7183	pyrimidine nucleobases salvage I
CLD04_RS09070	PWY-5686	UMP biosynthesis
CLD04_RS09070	PWY-7790	CLD04_RS09070
CLD04_RS09070	PWY-7791	CLD04_RS09070
CLD04_RS09075	PWY-5686	UMP biosynthesis
CLD04_RS09075	PWY-7790	CLD04_RS09075
CLD04_RS09075	PWY-7791	CLD04_RS09075
CLD04_RS09080	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS09080	PWY-5686	UMP biosynthesis
CLD04_RS09080	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS09080	PWY-7790	CLD04_RS09080
CLD04_RS09080	PWY-7791	CLD04_RS09080
CLD04_RS09085	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS09085	PWY-5686	UMP biosynthesis
CLD04_RS09085	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS09085	PWY-7790	CLD04_RS09085
CLD04_RS09085	PWY-7791	CLD04_RS09085
CLD04_RS09100	PWY-5686	UMP biosynthesis
CLD04_RS09100	PWY-7790	CLD04_RS09100
CLD04_RS09100	PWY-7791	CLD04_RS09100
CLD04_RS09105	PWY-5686	UMP biosynthesis
CLD04_RS09105	PWY-7790	CLD04_RS09105
CLD04_RS09105	PWY-7791	CLD04_RS09105
CLD04_RS09120	PWY-5278	sulfite oxidation III
CLD04_RS09120	PWY-5340	sulfate activation for sulfonation
CLD04_RS09120	PWY-6683	sulfate reduction III (assimilatory)
CLD04_RS09120	PWY-6932	selenate reduction
CLD04_RS09125	PWY-5340	sulfate activation for sulfonation
CLD04_RS09130	PWY-5194	siroheme biosynthesis
CLD04_RS09130	PWY-5196	factor 430 biosynthesis
CLD04_RS09130	PWY-5441	S-methyl-L-methionine cycle
CLD04_RS09130	PWY-702	L-methionine biosynthesis II
CLD04_RS09130	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLD04_RS09135	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLD04_RS09140	PWY-5194	siroheme biosynthesis
CLD04_RS09140	PWY-5196	factor 430 biosynthesis
CLD04_RS09140	PWY-5441	S-methyl-L-methionine cycle
CLD04_RS09140	PWY-702	L-methionine biosynthesis II
CLD04_RS09140	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CLD04_RS09165	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS09175	PWY-7851	CLD04_RS09175
CLD04_RS09195	PWY-6825	phosphatidylcholine biosynthesis V
CLD04_RS09200	PWY-2201	folate transformations I
CLD04_RS09220	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLD04_RS09220	PWY-5723	Rubisco shunt
CLD04_RS09225	PWY-6898	thiamin salvage III
CLD04_RS09225	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CLD04_RS09225	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CLD04_RS09225	PWY-7356	thiamin salvage IV (yeast)
CLD04_RS09275	PWY-4381	fatty acid biosynthesis initiation I
CLD04_RS09275	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CLD04_RS09275	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLD04_RS09280	PWY-5367	petroselinate biosynthesis
CLD04_RS09280	PWY-5515	L-arabinose degradation II
CLD04_RS09280	PWY-5525	D-glucuronate degradation I
CLD04_RS09280	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CLD04_RS09280	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CLD04_RS09280	PWY-5989	stearate biosynthesis II (bacteria and plants)
CLD04_RS09280	PWY-5994	palmitate biosynthesis I (animals and fungi)
CLD04_RS09280	PWY-6113	superpathway of mycolate biosynthesis
CLD04_RS09280	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CLD04_RS09280	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CLD04_RS09280	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLD04_RS09280	PWY-7663	gondoate biosynthesis (anaerobic)
CLD04_RS09280	PWY-7664	oleate biosynthesis IV (anaerobic)
CLD04_RS09280	PWY-7858	CLD04_RS09280
CLD04_RS09280	PWYG-321	mycolate biosynthesis
CLD04_RS09345	PWY-6829	tRNA methylation (yeast)
CLD04_RS09345	PWY-7285	methylwyosine biosynthesis
CLD04_RS09345	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CLD04_RS09375	PWY-5392	reductive TCA cycle II
CLD04_RS09375	PWY-5537	pyruvate fermentation to acetate V
CLD04_RS09375	PWY-5538	pyruvate fermentation to acetate VI
CLD04_RS09375	PWY-5690	TCA cycle II (plants and fungi)
CLD04_RS09375	PWY-5913	TCA cycle VI (obligate autotrophs)
CLD04_RS09375	PWY-6728	methylaspartate cycle
CLD04_RS09375	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CLD04_RS09375	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CLD04_RS09380	PWY-5392	reductive TCA cycle II
CLD04_RS09380	PWY-5537	pyruvate fermentation to acetate V
CLD04_RS09380	PWY-5538	pyruvate fermentation to acetate VI
CLD04_RS09380	PWY-5690	TCA cycle II (plants and fungi)
CLD04_RS09380	PWY-5913	TCA cycle VI (obligate autotrophs)
CLD04_RS09380	PWY-6728	methylaspartate cycle
CLD04_RS09380	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CLD04_RS09380	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CLD04_RS09450	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS09605	PWY-5667	CDP-diacylglycerol biosynthesis I
CLD04_RS09605	PWY-5981	CDP-diacylglycerol biosynthesis III
CLD04_RS09605	PWY-7817	CLD04_RS09605
CLD04_RS09610	PWY-7294	xylose degradation IV
CLD04_RS09610	PWY-7295	L-arabinose degradation IV
CLD04_RS09610	PWY-7560	methylerythritol phosphate pathway II
CLD04_RS09670	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CLD04_RS09670	PWY-6167	flavin biosynthesis II (archaea)
CLD04_RS09670	PWY-6168	flavin biosynthesis III (fungi)
CLD04_RS09670	PWY-7863	CLD04_RS09670
CLD04_RS09710	PWY-2941	L-lysine biosynthesis II
CLD04_RS09710	PWY-2942	L-lysine biosynthesis III
CLD04_RS09710	PWY-5097	L-lysine biosynthesis VI
CLD04_RS09710	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS09710	PWY-6559	spermidine biosynthesis II
CLD04_RS09710	PWY-6562	norspermidine biosynthesis
CLD04_RS09710	PWY-7153	grixazone biosynthesis
CLD04_RS09710	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS09715	PWY-2941	L-lysine biosynthesis II
CLD04_RS09715	PWY-2942	L-lysine biosynthesis III
CLD04_RS09715	PWY-5097	L-lysine biosynthesis VI
CLD04_RS09715	PWY-6559	spermidine biosynthesis II
CLD04_RS09715	PWY-6562	norspermidine biosynthesis
CLD04_RS09715	PWY-7153	grixazone biosynthesis
CLD04_RS09720	PWY-2941	L-lysine biosynthesis II
CLD04_RS09720	PWY-2942	L-lysine biosynthesis III
CLD04_RS09720	PWY-5097	L-lysine biosynthesis VI
CLD04_RS09785	PWY-5269	cardiolipin biosynthesis II
CLD04_RS09785	PWY-5668	cardiolipin biosynthesis I
CLD04_RS09785	PWY-7817	CLD04_RS09785
CLD04_RS09820	PWY-5515	L-arabinose degradation II
CLD04_RS09820	PWY-5525	D-glucuronate degradation I
CLD04_RS09820	PWY-7378	aminopropanol phosphate biosynthesis II
CLD04_RS09825	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CLD04_RS09825	PWY-6578	8-amino-7-oxononanoate biosynthesis III
CLD04_RS09825	PWY-7147	8-amino-7-oxononanoate biosynthesis II
CLD04_RS09920	PWY-2781	<i>cis</i>-zeatin biosynthesis
CLD04_RS09945	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CLD04_RS09945	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLD04_RS09945	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLD04_RS09945	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLD04_RS09945	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLD04_RS09945	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLD04_RS09945	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLD04_RS09945	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CLD04_RS09950	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CLD04_RS09950	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLD04_RS09950	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLD04_RS09950	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLD04_RS09950	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLD04_RS09950	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLD04_RS09950	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLD04_RS09950	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CLD04_RS09990	PWY-381	nitrate reduction II (assimilatory)
CLD04_RS09990	PWY-5675	nitrate reduction V (assimilatory)
CLD04_RS09990	PWY-6549	L-glutamine biosynthesis III
CLD04_RS09990	PWY-6963	ammonia assimilation cycle I
CLD04_RS09990	PWY-6964	ammonia assimilation cycle II
CLD04_RS10140	PWY-4261	glycerol degradation I
CLD04_RS10165	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLD04_RS10190	PWY-3841	folate transformations II
CLD04_RS10190	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLD04_RS10190	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLD04_RS10190	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLD04_RS10190	PWY-7199	pyrimidine deoxyribonucleosides salvage
CLD04_RS10190	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLD04_RS10320	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLD04_RS10320	PWY-5723	Rubisco shunt
CLD04_RS10320	PWY-6891	thiazole biosynthesis II (Bacillus)
CLD04_RS10320	PWY-6892	thiazole biosynthesis I (E. coli)
CLD04_RS10320	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS10320	PWY-7560	methylerythritol phosphate pathway II
CLD04_RS10470	PWY-3801	sucrose degradation II (sucrose synthase)
CLD04_RS10470	PWY-6527	stachyose degradation
CLD04_RS10470	PWY-7238	sucrose biosynthesis II
CLD04_RS10470	PWY-7343	UDP-glucose biosynthesis
CLD04_RS10470	PWY-7817	CLD04_RS10470
CLD04_RS10485	PWY-6679	jadomycin biosynthesis
CLD04_RS10485	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLD04_RS10545	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLD04_RS10545	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLD04_RS10580	PWY-4041	&gamma;-glutamyl cycle
CLD04_RS10580	PWY-5826	hypoglycin biosynthesis
CLD04_RS10605	PWY-3341	L-proline biosynthesis III
CLD04_RS10605	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CLD04_RS10610	PWY-3341	L-proline biosynthesis III
CLD04_RS10610	PWY-4981	L-proline biosynthesis II (from arginine)
CLD04_RS10610	PWY-6344	L-ornithine degradation II (Stickland reaction)
CLD04_RS10645	PWY-4261	glycerol degradation I
CLD04_RS10705	PWY-7431	aromatic biogenic amine degradation (bacteria)
CLD04_RS10830	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CLD04_RS11155	PWY-6854	ethylene biosynthesis III (microbes)
CLD04_RS11170	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CLD04_RS11175	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CLD04_RS11190	PWY-6854	ethylene biosynthesis III (microbes)
CLD04_RS11315	PWY-4202	arsenate detoxification I (glutaredoxin)
CLD04_RS11315	PWY-5532	adenosine nucleotides degradation IV
CLD04_RS11315	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CLD04_RS11315	PWY-6608	guanosine nucleotides degradation III
CLD04_RS11315	PWY-6609	adenine and adenosine salvage III
CLD04_RS11315	PWY-6611	adenine and adenosine salvage V
CLD04_RS11315	PWY-6620	guanine and guanosine salvage
CLD04_RS11315	PWY-6627	salinosporamide A biosynthesis
CLD04_RS11315	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CLD04_RS11315	PWY-7179	purine deoxyribonucleosides degradation I
CLD04_RS11315	PWY-7179-1	purine deoxyribonucleosides degradation
CLD04_RS11425	PWY-4702	phytate degradation I
CLD04_RS11500	PWY-3841	folate transformations II
CLD04_RS11500	PWY-6614	tetrahydrofolate biosynthesis
CLD04_RS11505	PWY-3841	folate transformations II
CLD04_RS11505	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLD04_RS11505	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLD04_RS11505	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLD04_RS11505	PWY-7199	pyrimidine deoxyribonucleosides salvage
CLD04_RS11505	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLD04_RS11530	PWY-5101	L-isoleucine biosynthesis II
CLD04_RS11530	PWY-5103	L-isoleucine biosynthesis III
CLD04_RS11530	PWY-5104	L-isoleucine biosynthesis IV
CLD04_RS11530	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CLD04_RS11555	PWY-6778	laminaribiose degradation
CLD04_RS11555	PWY-7817	CLD04_RS11555
CLD04_RS11630	PWY-5135	xanthohumol biosynthesis
CLD04_RS11630	PWY-6316	aromatic polyketides biosynthesis
CLD04_RS11630	PWY-6787	flavonoid biosynthesis (in equisetum)
CLD04_RS11630	PWY-7397	naringenin biosynthesis (engineered)
CLD04_RS11655	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLD04_RS11655	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CLD04_RS11655	PWY-7242	D-fructuronate degradation
CLD04_RS11655	PWY-7310	D-glucosaminate degradation
CLD04_RS11655	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CLD04_RS11670	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CLD04_RS11675	PWY-5515	L-arabinose degradation II
CLD04_RS11675	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CLD04_RS11675	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CLD04_RS11695	PWY-6825	phosphatidylcholine biosynthesis V
CLD04_RS11820	PWY-5155	&beta;-alanine biosynthesis III
CLD04_RS11830	PWY-6654	phosphopantothenate biosynthesis III
CLD04_RS11860	PWY-2941	L-lysine biosynthesis II
CLD04_RS11860	PWY-2942	L-lysine biosynthesis III
CLD04_RS11860	PWY-5097	L-lysine biosynthesis VI
CLD04_RS11895	PWY-101	photosynthesis light reactions
CLD04_RS11915	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLD04_RS11920	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CLD04_RS11955	PWY-5958	acridone alkaloid biosynthesis
CLD04_RS11955	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CLD04_RS11955	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CLD04_RS11960	PWY-3461	L-tyrosine biosynthesis II
CLD04_RS11960	PWY-3462	L-phenylalanine biosynthesis II
CLD04_RS11960	PWY-6120	L-tyrosine biosynthesis III
CLD04_RS11960	PWY-6627	salinosporamide A biosynthesis
CLD04_RS11960	PWY-7626	bacilysin biosynthesis
CLD04_RS11965	PWY-6164	3-dehydroquinate biosynthesis I
CLD04_RS11970	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLD04_RS11980	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CLD04_RS11980	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CLD04_RS11980	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLD04_RS11980	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLD04_RS11980	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CLD04_RS11980	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CLD04_RS11980	PWY-7205	CMP phosphorylation
CLD04_RS11980	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLD04_RS11980	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLD04_RS11980	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS11980	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CLD04_RS11980	PWY-7224	purine deoxyribonucleosides salvage
CLD04_RS11980	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CLD04_RS11980	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CLD04_RS11985	PWY-5807	heptaprenyl diphosphate biosynthesis
CLD04_RS11990	PWY-5839	menaquinol-7 biosynthesis
CLD04_RS11990	PWY-5844	menaquinol-9 biosynthesis
CLD04_RS11990	PWY-5849	menaquinol-6 biosynthesis
CLD04_RS11990	PWY-5890	menaquinol-10 biosynthesis
CLD04_RS11990	PWY-5891	menaquinol-11 biosynthesis
CLD04_RS11990	PWY-5892	menaquinol-12 biosynthesis
CLD04_RS11990	PWY-5895	menaquinol-13 biosynthesis
CLD04_RS11995	PWY-5807	heptaprenyl diphosphate biosynthesis
CLD04_RS12005	PWY-5663	tetrahydrobiopterin biosynthesis I
CLD04_RS12005	PWY-5664	tetrahydrobiopterin biosynthesis II
CLD04_RS12005	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CLD04_RS12005	PWY-6703	preQ<sub>0</sub> biosynthesis
CLD04_RS12005	PWY-6983	tetrahydrobiopterin biosynthesis III
CLD04_RS12005	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CLD04_RS12005	PWY-7852	CLD04_RS12005
CLD04_RS12030	PWY-5667	CDP-diacylglycerol biosynthesis I
CLD04_RS12030	PWY-5981	CDP-diacylglycerol biosynthesis III
CLD04_RS12065	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
CLD04_RS12065	PWY-6174	mevalonate pathway II (archaea)
CLD04_RS12065	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
CLD04_RS12065	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
CLD04_RS12065	PWY-7102	bisabolene biosynthesis
CLD04_RS12065	PWY-7391	isoprene biosynthesis II (engineered)
CLD04_RS12065	PWY-7524	mevalonate pathway III (archaea)
CLD04_RS12065	PWY-7560	methylerythritol phosphate pathway II
CLD04_RS12065	PWY-922	mevalonate pathway I
CLD04_RS12075	PWY-7205	CMP phosphorylation
CLD04_RS12165	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLD04_RS12165	PWY-6416	quinate degradation II
CLD04_RS12165	PWY-6707	gallate biosynthesis
CLD04_RS12220	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLD04_RS12220	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLD04_RS12250	PWY-6167	flavin biosynthesis II (archaea)
CLD04_RS12250	PWY-6168	flavin biosynthesis III (fungi)
CLD04_RS12255	PWY-6167	flavin biosynthesis II (archaea)
CLD04_RS12255	PWY-6168	flavin biosynthesis III (fungi)
CLD04_RS12255	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CLD04_RS12260	PWY-6167	flavin biosynthesis II (archaea)
CLD04_RS12260	PWY-6168	flavin biosynthesis III (fungi)
CLD04_RS12260	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS12265	PWY-5525	D-glucuronate degradation I
CLD04_RS12310	PWY-2941	L-lysine biosynthesis II
CLD04_RS12310	PWY-2942	L-lysine biosynthesis III
CLD04_RS12310	PWY-5097	L-lysine biosynthesis VI
CLD04_RS12365	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLD04_RS12365	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLD04_RS12370	PWY-4202	arsenate detoxification I (glutaredoxin)
CLD04_RS12370	PWY-5532	adenosine nucleotides degradation IV
CLD04_RS12370	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CLD04_RS12370	PWY-6608	guanosine nucleotides degradation III
CLD04_RS12370	PWY-6609	adenine and adenosine salvage III
CLD04_RS12370	PWY-6611	adenine and adenosine salvage V
CLD04_RS12370	PWY-6620	guanine and guanosine salvage
CLD04_RS12370	PWY-6627	salinosporamide A biosynthesis
CLD04_RS12370	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CLD04_RS12370	PWY-7179	purine deoxyribonucleosides degradation I
CLD04_RS12370	PWY-7179-1	purine deoxyribonucleosides degradation
CLD04_RS12375	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CLD04_RS12415	PWY-5392	reductive TCA cycle II
CLD04_RS12415	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CLD04_RS12415	PWY-5690	TCA cycle II (plants and fungi)
CLD04_RS12415	PWY-5913	TCA cycle VI (obligate autotrophs)
CLD04_RS12415	PWY-6728	methylaspartate cycle
CLD04_RS12415	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CLD04_RS12415	PWY-7254	TCA cycle VII (acetate-producers)
CLD04_RS12415	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CLD04_RS12515	PWY-3961	phosphopantothenate biosynthesis II
CLD04_RS12535	PWY-3341	L-proline biosynthesis III
CLD04_RS12535	PWY-4981	L-proline biosynthesis II (from arginine)
CLD04_RS12535	PWY-6344	L-ornithine degradation II (Stickland reaction)
CLD04_RS12565	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CLD04_RS12590	PWY-5451	acetone degradation I (to methylglyoxal)
CLD04_RS12590	PWY-6588	pyruvate fermentation to acetone
CLD04_RS12590	PWY-6876	isopropanol biosynthesis
CLD04_RS12590	PWY-7466	acetone degradation III (to propane-1,2-diol)
CLD04_RS12605	PWY-5386	methylglyoxal degradation I
CLD04_RS12605	PWY-5741	ethylmalonyl-CoA pathway
CLD04_RS12605	PWY-5743	3-hydroxypropanoate cycle
CLD04_RS12605	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CLD04_RS12605	PWY-6728	methylaspartate cycle
CLD04_RS12605	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CLD04_RS12605	PWY-7854	CLD04_RS12605
CLD04_RS12670	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CLD04_RS12670	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CLD04_RS12675	PWY-5482	pyruvate fermentation to acetate II
CLD04_RS12675	PWY-5485	pyruvate fermentation to acetate IV
CLD04_RS12675	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS12685	PWY-1281	sulfoacetaldehyde degradation I
CLD04_RS12685	PWY-5482	pyruvate fermentation to acetate II
CLD04_RS12685	PWY-5485	pyruvate fermentation to acetate IV
CLD04_RS12685	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS12685	PWY-6637	sulfolactate degradation II
CLD04_RS12700	PWY-5747	2-methylcitrate cycle II
CLD04_RS12720	PWY-1361	benzoyl-CoA degradation I (aerobic)
CLD04_RS12720	PWY-5109	2-methylbutanoate biosynthesis
CLD04_RS12720	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CLD04_RS12720	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CLD04_RS12720	PWY-5177	glutaryl-CoA degradation
CLD04_RS12720	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CLD04_RS12720	PWY-6435	4-hydroxybenzoate biosynthesis V
CLD04_RS12720	PWY-6583	pyruvate fermentation to butanol I
CLD04_RS12720	PWY-6863	pyruvate fermentation to hexanol
CLD04_RS12720	PWY-6883	pyruvate fermentation to butanol II
CLD04_RS12720	PWY-6944	androstenedione degradation
CLD04_RS12720	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CLD04_RS12720	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CLD04_RS12720	PWY-7007	methyl ketone biosynthesis
CLD04_RS12720	PWY-7046	4-coumarate degradation (anaerobic)
CLD04_RS12720	PWY-7094	fatty acid salvage
CLD04_RS12720	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CLD04_RS12720	PWY-735	jasmonic acid biosynthesis
CLD04_RS12720	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CLD04_RS12720	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CLD04_RS12720	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CLD04_RS12720	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CLD04_RS12720	PWY-7726	CLD04_RS12720
CLD04_RS12720	PWY-7778	CLD04_RS12720
CLD04_RS12720	PWY-7779	CLD04_RS12720
CLD04_RS12720	PWY-81	toluene degradation to benzoyl-CoA (anaerobic)
CLD04_RS12775	PWY-6891	thiazole biosynthesis II (Bacillus)
CLD04_RS12775	PWY-6892	thiazole biosynthesis I (E. coli)
CLD04_RS12775	PWY-7560	methylerythritol phosphate pathway II
CLD04_RS12795	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CLD04_RS12795	PWY-2201	folate transformations I
CLD04_RS12795	PWY-3841	folate transformations II
CLD04_RS12795	PWY-5030	L-histidine degradation III
CLD04_RS12795	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS12795	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CLD04_RS12870	PWY-7799	CLD04_RS12870
CLD04_RS12870	PWY-7800	CLD04_RS12870
CLD04_RS12875	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLD04_RS12875	PWY-6416	quinate degradation II
CLD04_RS12875	PWY-6707	gallate biosynthesis
CLD04_RS12905	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CLD04_RS12905	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CLD04_RS13075	PWY-2722	trehalose degradation IV
CLD04_RS13075	PWY-2723	trehalose degradation V
CLD04_RS13075	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CLD04_RS13075	PWY-5661	GDP-glucose biosynthesis
CLD04_RS13075	PWY-621	sucrose degradation III (sucrose invertase)
CLD04_RS13075	PWY-7238	sucrose biosynthesis II
CLD04_RS13075	PWY-7385	1,3-propanediol biosynthesis (engineered)
CLD04_RS13160	PWY-6854	ethylene biosynthesis III (microbes)
CLD04_RS13225	PWY-7560	methylerythritol phosphate pathway II
CLD04_RS13305	PWY-6556	pyrimidine ribonucleosides salvage II
CLD04_RS13305	PWY-7181	pyrimidine deoxyribonucleosides degradation
CLD04_RS13305	PWY-7193	pyrimidine ribonucleosides salvage I
CLD04_RS13305	PWY-7199	pyrimidine deoxyribonucleosides salvage
CLD04_RS13310	PWY-7039	phosphatidate metabolism, as a signaling molecule
CLD04_RS13310	PWY-7817	CLD04_RS13310
CLD04_RS13375	PWY-2201	folate transformations I
CLD04_RS13450	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CLD04_RS13460	PWY-3341	L-proline biosynthesis III
CLD04_RS13460	PWY-4981	L-proline biosynthesis II (from arginine)
CLD04_RS13460	PWY-6344	L-ornithine degradation II (Stickland reaction)
CLD04_RS13480	PWY-5381	pyridine nucleotide cycling (plants)
CLD04_RS13480	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CLD04_RS13480	PWY-7761	CLD04_RS13480
CLD04_RS13490	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CLD04_RS13555	PWY-7456	mannan degradation
CLD04_RS13635	PWY-0	putrescine degradation III
CLD04_RS13635	PWY-6117	spermine and spermidine degradation I
CLD04_RS13745	PWY-723	alkylnitronates degradation
CLD04_RS13760	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLD04_RS13760	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLD04_RS13830	PWY-5386	methylglyoxal degradation I
CLD04_RS13940	PWY-5451	acetone degradation I (to methylglyoxal)
CLD04_RS13940	PWY-5665	vanillin biosynthesis I
CLD04_RS13940	PWY-6398	melatonin degradation I
CLD04_RS13940	PWY-6992	1,5-anhydrofructose degradation
CLD04_RS13940	PWY-7466	acetone degradation III (to propane-1,2-diol)
CLD04_RS13940	PWY-7826	CLD04_RS13940
CLD04_RS13970	PWY-1881	formate oxidation to CO<sub>2</sub>
CLD04_RS13970	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS13970	PWY-6696	oxalate degradation III
CLD04_RS13995	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CLD04_RS13995	PWY-6153	autoinducer AI-2 biosynthesis I
CLD04_RS13995	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CLD04_RS14025	PWY-7193	pyrimidine ribonucleosides salvage I
CLD04_RS14125	PWY-6823	molybdenum cofactor biosynthesis
CLD04_RS14125	PWY-6891	thiazole biosynthesis II (Bacillus)
CLD04_RS14125	PWY-6892	thiazole biosynthesis I (E. coli)
CLD04_RS14125	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CLD04_RS14180	PWY-6605	adenine and adenosine salvage II
CLD04_RS14180	PWY-6610	adenine and adenosine salvage IV
CLD04_RS14180	PWY-7805	CLD04_RS14180
CLD04_RS14180	PWY-7807	CLD04_RS14180
CLD04_RS14185	PWY-7805	CLD04_RS14185
CLD04_RS14185	PWY-7807	CLD04_RS14185
CLD04_RS14235	PWY-6700	queuosine biosynthesis
CLD04_RS14240	PWY-6700	queuosine biosynthesis
CLD04_RS14310	PWY-5316	nicotine biosynthesis
CLD04_RS14310	PWY-7342	superpathway of nicotine biosynthesis
CLD04_RS14315	PWY-5316	nicotine biosynthesis
CLD04_RS14315	PWY-5381	pyridine nucleotide cycling (plants)
CLD04_RS14315	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CLD04_RS14315	PWY-7342	superpathway of nicotine biosynthesis
CLD04_RS14320	PWY-5316	nicotine biosynthesis
CLD04_RS14320	PWY-7342	superpathway of nicotine biosynthesis
CLD04_RS14325	PWY-6823	molybdenum cofactor biosynthesis
CLD04_RS14325	PWY-6891	thiazole biosynthesis II (Bacillus)
CLD04_RS14325	PWY-6892	thiazole biosynthesis I (E. coli)
CLD04_RS14325	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CLD04_RS14335	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CLD04_RS14425	PWY-2161	folate polyglutamylation
CLD04_RS14450	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLD04_RS14455	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLD04_RS14455	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CLD04_RS14460	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLD04_RS14460	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CLD04_RS14465	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLD04_RS14465	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CLD04_RS14475	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CLD04_RS14525	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CLD04_RS14530	PWY-6871	3-methylbutanol biosynthesis
CLD04_RS14535	PWY-5103	L-isoleucine biosynthesis III
CLD04_RS14535	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CLD04_RS14540	PWY-5101	L-isoleucine biosynthesis II
CLD04_RS14540	PWY-5103	L-isoleucine biosynthesis III
CLD04_RS14540	PWY-5104	L-isoleucine biosynthesis IV
CLD04_RS14540	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CLD04_RS14540	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CLD04_RS14540	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CLD04_RS14540	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CLD04_RS14545	PWY-5101	L-isoleucine biosynthesis II
CLD04_RS14545	PWY-5103	L-isoleucine biosynthesis III
CLD04_RS14545	PWY-5104	L-isoleucine biosynthesis IV
CLD04_RS14545	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CLD04_RS14545	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CLD04_RS14545	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CLD04_RS14545	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CLD04_RS14595	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLD04_RS14595	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLD04_RS14620	PWY-3781	aerobic respiration I (cytochrome c)
CLD04_RS14620	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CLD04_RS14620	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CLD04_RS14620	PWY-5690	TCA cycle II (plants and fungi)
CLD04_RS14620	PWY-6728	methylaspartate cycle
CLD04_RS14620	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CLD04_RS14620	PWY-7254	TCA cycle VII (acetate-producers)
CLD04_RS14620	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CLD04_RS14625	PWY-3781	aerobic respiration I (cytochrome c)
CLD04_RS14625	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CLD04_RS14625	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CLD04_RS14625	PWY-5690	TCA cycle II (plants and fungi)
CLD04_RS14625	PWY-6728	methylaspartate cycle
CLD04_RS14625	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CLD04_RS14625	PWY-7254	TCA cycle VII (acetate-producers)
CLD04_RS14625	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CLD04_RS14640	PWY-2941	L-lysine biosynthesis II
CLD04_RS14640	PWY-2942	L-lysine biosynthesis III
CLD04_RS14640	PWY-5097	L-lysine biosynthesis VI
CLD04_RS14640	PWY-6559	spermidine biosynthesis II
CLD04_RS14640	PWY-6562	norspermidine biosynthesis
CLD04_RS14640	PWY-7153	grixazone biosynthesis
CLD04_RS14795	PWY-6349	CDP-archaeol biosynthesis
CLD04_RS14795	PWY-7294	xylose degradation IV
CLD04_RS14795	PWY-7295	L-arabinose degradation IV
CLD04_RS14805	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
CLD04_RS14810	PWY-4261	glycerol degradation I
CLD04_RS14920	PWY-6834	spermidine biosynthesis III
CLD04_RS14925	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS14925	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS14925	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS14925	PWY-7003	glycerol degradation to butanol
CLD04_RS14945	PWY-7851	CLD04_RS14945
CLD04_RS14975	PWY-1622	formaldehyde assimilation I (serine pathway)
CLD04_RS14975	PWY-5392	reductive TCA cycle II
CLD04_RS14975	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CLD04_RS14975	PWY-5690	TCA cycle II (plants and fungi)
CLD04_RS14975	PWY-5913	TCA cycle VI (obligate autotrophs)
CLD04_RS14975	PWY-6728	methylaspartate cycle
CLD04_RS14975	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CLD04_RS14975	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CLD04_RS14975	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLD04_RS14980	PWY-5913	TCA cycle VI (obligate autotrophs)
CLD04_RS14980	PWY-6549	L-glutamine biosynthesis III
CLD04_RS14980	PWY-6728	methylaspartate cycle
CLD04_RS14980	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CLD04_RS14980	PWY-7124	ethylene biosynthesis V (engineered)
CLD04_RS14980	PWY-7254	TCA cycle VII (acetate-producers)
CLD04_RS14980	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CLD04_RS15005	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS15005	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLD04_RS15005	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS15005	PWY-5723	Rubisco shunt
CLD04_RS15005	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS15005	PWY-6886	1-butanol autotrophic biosynthesis
CLD04_RS15005	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS15005	PWY-7003	glycerol degradation to butanol
CLD04_RS15005	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CLD04_RS15005	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CLD04_RS15010	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS15010	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLD04_RS15010	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS15010	PWY-7385	1,3-propanediol biosynthesis (engineered)
CLD04_RS15015	PWY-6679	jadomycin biosynthesis
CLD04_RS15015	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLD04_RS15020	PWY-6679	jadomycin biosynthesis
CLD04_RS15020	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLD04_RS15050	PWY-7805	CLD04_RS15050
CLD04_RS15050	PWY-7807	CLD04_RS15050
CLD04_RS15060	PWY-1281	sulfoacetaldehyde degradation I
CLD04_RS15060	PWY-5482	pyruvate fermentation to acetate II
CLD04_RS15060	PWY-5485	pyruvate fermentation to acetate IV
CLD04_RS15060	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS15060	PWY-6637	sulfolactate degradation II
CLD04_RS15145	PWY-4983	L-citrulline-nitric oxide cycle
CLD04_RS15145	PWY-4984	urea cycle
CLD04_RS15145	PWY-5	canavanine biosynthesis
CLD04_RS15145	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS15145	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS15150	PWY-4983	L-citrulline-nitric oxide cycle
CLD04_RS15150	PWY-4984	urea cycle
CLD04_RS15150	PWY-5	canavanine biosynthesis
CLD04_RS15150	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CLD04_RS15150	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CLD04_RS15160	PWY-5482	pyruvate fermentation to acetate II
CLD04_RS15160	PWY-5485	pyruvate fermentation to acetate IV
CLD04_RS15160	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS15195	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CLD04_RS15195	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CLD04_RS15195	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CLD04_RS15220	PWY-6823	molybdenum cofactor biosynthesis
CLD04_RS15220	PWY-6891	thiazole biosynthesis II (Bacillus)
CLD04_RS15220	PWY-6892	thiazole biosynthesis I (E. coli)
CLD04_RS15220	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CLD04_RS15315	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CLD04_RS15315	PWY-3461	L-tyrosine biosynthesis II
CLD04_RS15315	PWY-3462	L-phenylalanine biosynthesis II
CLD04_RS15315	PWY-6120	L-tyrosine biosynthesis III
CLD04_RS15315	PWY-6164	3-dehydroquinate biosynthesis I
CLD04_RS15315	PWY-6627	salinosporamide A biosynthesis
CLD04_RS15315	PWY-7626	bacilysin biosynthesis
CLD04_RS15315	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CLD04_RS15335	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLD04_RS15335	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLD04_RS15420	PWY-6936	seleno-amino acid biosynthesis
CLD04_RS15530	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CLD04_RS15535	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CLD04_RS15540	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CLD04_RS15540	PWY-6578	8-amino-7-oxononanoate biosynthesis III
CLD04_RS15540	PWY-7147	8-amino-7-oxononanoate biosynthesis II
CLD04_RS15550	PWY-6578	8-amino-7-oxononanoate biosynthesis III
CLD04_RS15680	PWY-5773	gossypol biosynthesis
CLD04_RS15680	PWY-5828	lacinilene C biosynthesis
CLD04_RS15705	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CLD04_RS15705	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CLD04_RS15710	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CLD04_RS15710	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CLD04_RS15740	PWY-6502	oxidized GTP and dGTP detoxification
CLD04_RS15765	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CLD04_RS15765	PWY-6153	autoinducer AI-2 biosynthesis I
CLD04_RS15765	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CLD04_RS15775	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CLD04_RS15775	PWY-5743	3-hydroxypropanoate cycle
CLD04_RS15775	PWY-5744	glyoxylate assimilation
CLD04_RS15775	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CLD04_RS15775	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS15775	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CLD04_RS15775	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CLD04_RS15825	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS15825	PWY-1622	formaldehyde assimilation I (serine pathway)
CLD04_RS15825	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLD04_RS15825	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS15825	PWY-5723	Rubisco shunt
CLD04_RS15825	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CLD04_RS15825	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS15825	PWY-6886	1-butanol autotrophic biosynthesis
CLD04_RS15825	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS15825	PWY-7003	glycerol degradation to butanol
CLD04_RS15825	PWY-7124	ethylene biosynthesis V (engineered)
CLD04_RS15825	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CLD04_RS15830	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CLD04_RS15835	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CLD04_RS15840	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CLD04_RS15845	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CLD04_RS15850	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CLD04_RS15850	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CLD04_RS15850	PWY-6406	salicylate biosynthesis I
CLD04_RS15865	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CLD04_RS15865	PWY-7820	CLD04_RS15865
CLD04_RS15905	PWY-5941	glycogen degradation II (eukaryotic)
CLD04_RS15905	PWY-6731	starch degradation III
CLD04_RS15905	PWY-6737	starch degradation V
CLD04_RS15905	PWY-7238	sucrose biosynthesis II
CLD04_RS15910	PWY-622	starch biosynthesis
CLD04_RS15920	PWY-622	starch biosynthesis
CLD04_RS15925	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CLD04_RS15925	PWY-622	starch biosynthesis
CLD04_RS16085	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CLD04_RS16085	PWY-7494	choline degradation IV
CLD04_RS16130	PWY-5331	taurine biosynthesis
CLD04_RS16140	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CLD04_RS16165	PWY-4261	glycerol degradation I
CLD04_RS16260	PWY-3801	sucrose degradation II (sucrose synthase)
CLD04_RS16260	PWY-5054	sorbitol biosynthesis I
CLD04_RS16260	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CLD04_RS16260	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CLD04_RS16260	PWY-5659	GDP-mannose biosynthesis
CLD04_RS16260	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS16260	PWY-621	sucrose degradation III (sucrose invertase)
CLD04_RS16260	PWY-622	starch biosynthesis
CLD04_RS16260	PWY-6981	chitin biosynthesis
CLD04_RS16260	PWY-6992	1,5-anhydrofructose degradation
CLD04_RS16260	PWY-7238	sucrose biosynthesis II
CLD04_RS16260	PWY-7347	sucrose biosynthesis III
CLD04_RS16260	PWY-7385	1,3-propanediol biosynthesis (engineered)
CLD04_RS16305	PWY-6936	seleno-amino acid biosynthesis
CLD04_RS16465	PWY-5381	pyridine nucleotide cycling (plants)
CLD04_RS16575	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CLD04_RS16585	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CLD04_RS16585	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CLD04_RS16585	PWY-6406	salicylate biosynthesis I
CLD04_RS16590	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CLD04_RS16645	PWY-101	photosynthesis light reactions
CLD04_RS16675	PWY-2941	L-lysine biosynthesis II
CLD04_RS16675	PWY-5097	L-lysine biosynthesis VI
CLD04_RS16710	PWY-702	L-methionine biosynthesis II
CLD04_RS16755	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CLD04_RS16755	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CLD04_RS16795	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
CLD04_RS16795	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
CLD04_RS16815	PWY-5691	urate degradation to allantoin I
CLD04_RS16815	PWY-7394	urate degradation to allantoin II
CLD04_RS16815	PWY-7849	CLD04_RS16815
CLD04_RS16820	PWY-5691	urate degradation to allantoin I
CLD04_RS16820	PWY-7394	urate degradation to allantoin II
CLD04_RS16820	PWY-7849	CLD04_RS16820
CLD04_RS16830	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS16830	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CLD04_RS16830	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CLD04_RS16830	PWY-6596	adenosine nucleotides degradation I
CLD04_RS16830	PWY-6606	guanosine nucleotides degradation II
CLD04_RS16830	PWY-6607	guanosine nucleotides degradation I
CLD04_RS16830	PWY-6608	guanosine nucleotides degradation III
CLD04_RS16830	PWY-6999	theophylline degradation
CLD04_RS16835	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS16835	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CLD04_RS16835	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CLD04_RS16835	PWY-6596	adenosine nucleotides degradation I
CLD04_RS16835	PWY-6606	guanosine nucleotides degradation II
CLD04_RS16835	PWY-6607	guanosine nucleotides degradation I
CLD04_RS16835	PWY-6608	guanosine nucleotides degradation III
CLD04_RS16835	PWY-6999	theophylline degradation
CLD04_RS16840	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS16840	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CLD04_RS16840	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CLD04_RS16840	PWY-6596	adenosine nucleotides degradation I
CLD04_RS16840	PWY-6606	guanosine nucleotides degradation II
CLD04_RS16840	PWY-6607	guanosine nucleotides degradation I
CLD04_RS16840	PWY-6608	guanosine nucleotides degradation III
CLD04_RS16840	PWY-6999	theophylline degradation
CLD04_RS16855	PWY-6832	2-aminoethylphosphonate degradation II
CLD04_RS16970	PWY-6823	molybdenum cofactor biosynthesis
CLD04_RS16970	PWY-6891	thiazole biosynthesis II (Bacillus)
CLD04_RS16970	PWY-6892	thiazole biosynthesis I (E. coli)
CLD04_RS16970	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CLD04_RS17055	PWY-1361	benzoyl-CoA degradation I (aerobic)
CLD04_RS17055	PWY-5109	2-methylbutanoate biosynthesis
CLD04_RS17055	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CLD04_RS17055	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CLD04_RS17055	PWY-5177	glutaryl-CoA degradation
CLD04_RS17055	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CLD04_RS17055	PWY-6435	4-hydroxybenzoate biosynthesis V
CLD04_RS17055	PWY-6583	pyruvate fermentation to butanol I
CLD04_RS17055	PWY-6863	pyruvate fermentation to hexanol
CLD04_RS17055	PWY-6883	pyruvate fermentation to butanol II
CLD04_RS17055	PWY-6944	androstenedione degradation
CLD04_RS17055	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CLD04_RS17055	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CLD04_RS17055	PWY-7007	methyl ketone biosynthesis
CLD04_RS17055	PWY-7046	4-coumarate degradation (anaerobic)
CLD04_RS17055	PWY-7094	fatty acid salvage
CLD04_RS17055	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CLD04_RS17055	PWY-735	jasmonic acid biosynthesis
CLD04_RS17055	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CLD04_RS17055	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CLD04_RS17055	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CLD04_RS17055	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CLD04_RS17055	PWY-7726	CLD04_RS17055
CLD04_RS17055	PWY-7778	CLD04_RS17055
CLD04_RS17055	PWY-7779	CLD04_RS17055
CLD04_RS17055	PWY-81	toluene degradation to benzoyl-CoA (anaerobic)
CLD04_RS17065	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CLD04_RS17065	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CLD04_RS17160	PWY-5392	reductive TCA cycle II
CLD04_RS17160	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CLD04_RS17160	PWY-5690	TCA cycle II (plants and fungi)
CLD04_RS17160	PWY-5913	TCA cycle VI (obligate autotrophs)
CLD04_RS17160	PWY-6728	methylaspartate cycle
CLD04_RS17160	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CLD04_RS17160	PWY-7254	TCA cycle VII (acetate-producers)
CLD04_RS17160	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CLD04_RS17220	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CLD04_RS17220	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CLD04_RS17220	PWY-6268	adenosylcobalamin salvage from cobalamin
CLD04_RS17220	PWY-6269	adenosylcobalamin salvage from cobinamide II
CLD04_RS17275	PWY-6698	oxalate degradation V
CLD04_RS17380	PWY-6683	sulfate reduction III (assimilatory)
CLD04_RS17385	PWY-6683	sulfate reduction III (assimilatory)
CLD04_RS17620	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS17620	PWY-1622	formaldehyde assimilation I (serine pathway)
CLD04_RS17620	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLD04_RS17620	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS17620	PWY-5723	Rubisco shunt
CLD04_RS17620	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS17620	PWY-6886	1-butanol autotrophic biosynthesis
CLD04_RS17620	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS17620	PWY-7003	glycerol degradation to butanol
CLD04_RS17620	PWY-7124	ethylene biosynthesis V (engineered)
CLD04_RS17620	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CLD04_RS17625	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS17625	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CLD04_RS17625	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS17625	PWY-5723	Rubisco shunt
CLD04_RS17625	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS17625	PWY-6886	1-butanol autotrophic biosynthesis
CLD04_RS17625	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS17625	PWY-7003	glycerol degradation to butanol
CLD04_RS17625	PWY-7124	ethylene biosynthesis V (engineered)
CLD04_RS17625	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CLD04_RS17630	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS17630	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS17630	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS17630	PWY-7003	glycerol degradation to butanol
CLD04_RS17635	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS17635	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS17635	PWY-6886	1-butanol autotrophic biosynthesis
CLD04_RS17635	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS17635	PWY-7003	glycerol degradation to butanol
CLD04_RS17640	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS17640	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS17640	PWY-6901	superpathway of glucose and xylose degradation
CLD04_RS17640	PWY-7003	glycerol degradation to butanol
CLD04_RS17760	PWY-6807	xyloglucan degradation II (exoglucanase)
CLD04_RS17905	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLD04_RS17905	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLD04_RS17960	PWY-2721	trehalose degradation III
CLD04_RS17960	PWY-2722	trehalose degradation IV
CLD04_RS17960	PWY-7459	kojibiose degradation
CLD04_RS18020	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CLD04_RS18020	PWY-5743	3-hydroxypropanoate cycle
CLD04_RS18020	PWY-5744	glyoxylate assimilation
CLD04_RS18020	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CLD04_RS18020	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS18020	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CLD04_RS18020	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CLD04_RS18175	PWY-7805	CLD04_RS18175
CLD04_RS18175	PWY-7807	CLD04_RS18175
CLD04_RS18195	PWY-6906	chitin derivatives degradation
CLD04_RS18195	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CLD04_RS18195	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CLD04_RS18200	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CLD04_RS18200	PWY-6855	chitin degradation I (archaea)
CLD04_RS18200	PWY-6906	chitin derivatives degradation
CLD04_RS18445	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLD04_RS18445	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLD04_RS18445	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLD04_RS18470	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CLD04_RS18470	PWY-7820	CLD04_RS18470
CLD04_RS18535	PWY-3801	sucrose degradation II (sucrose synthase)
CLD04_RS18535	PWY-6527	stachyose degradation
CLD04_RS18535	PWY-7238	sucrose biosynthesis II
CLD04_RS18535	PWY-7343	UDP-glucose biosynthesis
CLD04_RS18535	PWY-7817	CLD04_RS18535
CLD04_RS18580	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CLD04_RS18580	PWY-622	starch biosynthesis
CLD04_RS18580	PWY-7815	CLD04_RS18580
CLD04_RS18580	PWY-7816	CLD04_RS18580
CLD04_RS18580	PWY-7819	CLD04_RS18580
CLD04_RS18590	PWY-7560	methylerythritol phosphate pathway II
CLD04_RS18615	PWY-3861	mannitol degradation II
CLD04_RS18615	PWY-3881	mannitol biosynthesis
CLD04_RS18615	PWY-5659	GDP-mannose biosynthesis
CLD04_RS18615	PWY-6992	1,5-anhydrofructose degradation
CLD04_RS18615	PWY-7456	mannan degradation
CLD04_RS18615	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
CLD04_RS18615	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CLD04_RS18725	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CLD04_RS18730	PWY-5101	L-isoleucine biosynthesis II
CLD04_RS18730	PWY-5103	L-isoleucine biosynthesis III
CLD04_RS18730	PWY-5104	L-isoleucine biosynthesis IV
CLD04_RS18730	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CLD04_RS18730	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CLD04_RS18730	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CLD04_RS18730	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CLD04_RS18775	PWY-4041	&gamma;-glutamyl cycle
CLD04_RS18775	PWY-5826	hypoglycin biosynthesis
CLD04_RS18845	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CLD04_RS18845	PWY-7820	CLD04_RS18845
CLD04_RS18925	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CLD04_RS18925	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CLD04_RS18925	PWY-5989	stearate biosynthesis II (bacteria and plants)
CLD04_RS18925	PWY-5994	palmitate biosynthesis I (animals and fungi)
CLD04_RS18925	PWY-6113	superpathway of mycolate biosynthesis
CLD04_RS18925	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CLD04_RS18925	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CLD04_RS18925	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CLD04_RS18925	PWY-7663	gondoate biosynthesis (anaerobic)
CLD04_RS18925	PWY-7664	oleate biosynthesis IV (anaerobic)
CLD04_RS18925	PWY-7858	CLD04_RS18925
CLD04_RS18925	PWYG-321	mycolate biosynthesis
CLD04_RS18985	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CLD04_RS19060	PWY-5704	urea degradation II
CLD04_RS19065	PWY-5704	urea degradation II
CLD04_RS19070	PWY-5704	urea degradation II
CLD04_RS19155	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLD04_RS19155	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLD04_RS19180	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS19190	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS19220	PWY-7183	pyrimidine nucleobases salvage I
CLD04_RS19225	PWY-1622	formaldehyde assimilation I (serine pathway)
CLD04_RS19225	PWY-181	photorespiration
CLD04_RS19225	PWY-2161	folate polyglutamylation
CLD04_RS19225	PWY-2201	folate transformations I
CLD04_RS19225	PWY-3661	glycine betaine degradation I
CLD04_RS19225	PWY-3661-1	glycine betaine degradation II (mammalian)
CLD04_RS19225	PWY-3841	folate transformations II
CLD04_RS19225	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS19305	PWY-7199	pyrimidine deoxyribonucleosides salvage
CLD04_RS19315	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS19320	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS19325	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CLD04_RS19325	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CLD04_RS19330	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLD04_RS19330	PWY-5723	Rubisco shunt
CLD04_RS19335	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS19335	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLD04_RS19335	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS19335	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS19335	PWY-7385	1,3-propanediol biosynthesis (engineered)
CLD04_RS19360	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CLD04_RS19360	PWY-7177	UTP and CTP dephosphorylation II
CLD04_RS19360	PWY-7185	UTP and CTP dephosphorylation I
CLD04_RS19545	PWY-40	putrescine biosynthesis I
CLD04_RS19545	PWY-6305	putrescine biosynthesis IV
CLD04_RS19625	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CLD04_RS19635	PWY-1281	sulfoacetaldehyde degradation I
CLD04_RS19635	PWY-5482	pyruvate fermentation to acetate II
CLD04_RS19635	PWY-5485	pyruvate fermentation to acetate IV
CLD04_RS19635	PWY-5497	purine nucleobases degradation II (anaerobic)
CLD04_RS19635	PWY-6637	sulfolactate degradation II
CLD04_RS19695	PWY-6853	ethylene biosynthesis II (microbes)
CLD04_RS19720	PWY-3221	dTDP-L-rhamnose biosynthesis II
CLD04_RS19720	PWY-6808	dTDP-D-forosamine biosynthesis
CLD04_RS19720	PWY-6942	dTDP-D-desosamine biosynthesis
CLD04_RS19720	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CLD04_RS19720	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CLD04_RS19720	PWY-6974	dTDP-L-olivose biosynthesis
CLD04_RS19720	PWY-6976	dTDP-L-mycarose biosynthesis
CLD04_RS19720	PWY-7104	dTDP-L-megosamine biosynthesis
CLD04_RS19720	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CLD04_RS19720	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CLD04_RS19720	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CLD04_RS19720	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CLD04_RS19720	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CLD04_RS19720	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CLD04_RS19720	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CLD04_RS19720	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CLD04_RS19720	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CLD04_RS19720	PWY-7688	CLD04_RS19720
CLD04_RS19720	PWY-7814	CLD04_RS19720
CLD04_RS19730	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CLD04_RS19730	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CLD04_RS19730	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CLD04_RS19730	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CLD04_RS19735	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CLD04_RS19820	PWY-6910	hydroxymethylpyrimidine salvage
CLD04_RS19820	PWY-7356	thiamin salvage IV (yeast)
CLD04_RS19820	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CLD04_RS19890	PWY-3781	aerobic respiration I (cytochrome c)
CLD04_RS19890	PWY-4521	arsenite oxidation I (respiratory)
CLD04_RS19890	PWY-6692	Fe(II) oxidation
CLD04_RS19890	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CLD04_RS19905	PWY-6317	galactose degradation I (Leloir pathway)
CLD04_RS19905	PWY-6527	stachyose degradation
CLD04_RS19910	PWY-3821	galactose degradation III
CLD04_RS19910	PWY-6317	galactose degradation I (Leloir pathway)
CLD04_RS19910	PWY-6527	stachyose degradation
CLD04_RS19965	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CLD04_RS19965	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CLD04_RS19965	PWY-6897	thiamin salvage II
CLD04_RS19965	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CLD04_RS19965	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CLD04_RS19965	PWY-7356	thiamin salvage IV (yeast)
CLD04_RS19965	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CLD04_RS19970	PWY-6897	thiamin salvage II
CLD04_RS19970	PWY-7356	thiamin salvage IV (yeast)
CLD04_RS19970	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CLD04_RS20005	PWY-5386	methylglyoxal degradation I
CLD04_RS20085	PWY-5839	menaquinol-7 biosynthesis
CLD04_RS20085	PWY-5851	demethylmenaquinol-9 biosynthesis
CLD04_RS20085	PWY-5852	demethylmenaquinol-8 biosynthesis I
CLD04_RS20085	PWY-5853	demethylmenaquinol-6 biosynthesis I
CLD04_RS20085	PWY-5890	menaquinol-10 biosynthesis
CLD04_RS20085	PWY-5891	menaquinol-11 biosynthesis
CLD04_RS20085	PWY-5892	menaquinol-12 biosynthesis
CLD04_RS20085	PWY-5895	menaquinol-13 biosynthesis
CLD04_RS20125	PWY-5057	L-valine degradation II
CLD04_RS20125	PWY-5076	L-leucine degradation III
CLD04_RS20125	PWY-5078	L-isoleucine degradation II
CLD04_RS20125	PWY-5101	L-isoleucine biosynthesis II
CLD04_RS20125	PWY-5103	L-isoleucine biosynthesis III
CLD04_RS20125	PWY-5104	L-isoleucine biosynthesis IV
CLD04_RS20125	PWY-5108	L-isoleucine biosynthesis V
CLD04_RS20125	PWY-7767	CLD04_RS20125
CLD04_RS20145	PWY-6619	adenine and adenosine salvage VI
CLD04_RS20280	PWY-3821	galactose degradation III
CLD04_RS20280	PWY-6317	galactose degradation I (Leloir pathway)
CLD04_RS20280	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CLD04_RS20280	PWY-6527	stachyose degradation
CLD04_RS20280	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CLD04_RS20280	PWY-7344	UDP-D-galactose biosynthesis
CLD04_RS20315	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CLD04_RS20315	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CLD04_RS20315	PWY-6936	seleno-amino acid biosynthesis
CLD04_RS20315	PWY-702	L-methionine biosynthesis II
CLD04_RS20320	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CLD04_RS20320	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CLD04_RS20320	PWY-6936	seleno-amino acid biosynthesis
CLD04_RS20320	PWY-702	L-methionine biosynthesis II
CLD04_RS20635	PWY-5028	L-histidine degradation II
CLD04_RS20635	PWY-5030	L-histidine degradation III
CLD04_RS20640	PWY-5028	L-histidine degradation II
CLD04_RS20640	PWY-5030	L-histidine degradation III
CLD04_RS20655	PWY-7181	pyrimidine deoxyribonucleosides degradation
CLD04_RS20665	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CLD04_RS20785	PWY-1042	glycolysis IV (plant cytosol)
CLD04_RS20785	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CLD04_RS20785	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS20785	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CLD04_RS20785	PWY-7385	1,3-propanediol biosynthesis (engineered)
CLD04_RS20800	PWY-5940	streptomycin biosynthesis
CLD04_RS20800	PWY-7237	<i>myo</i>-, <i>chiro</i>- and <i>scillo</i>-inositol degradation
CLD04_RS20800	PWY-7241	<I>myo</I>-inositol degradation II
CLD04_RS20825	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CLD04_RS20830	PWY-5642	2,4-dinitrotoluene degradation
CLD04_RS20830	PWY-6373	acrylate degradation
CLD04_RS20960	PWY-4261	glycerol degradation I
CLD04_RS20960	PWY-5530	sorbitol biosynthesis II
CLD04_RS21020	PWY-5484	glycolysis II (from fructose 6-phosphate)
CLD04_RS21035	PWY-6825	phosphatidylcholine biosynthesis V
CLD04_RS21090	PWY-31	canavanine degradation
CLD04_RS21090	PWY-4984	urea cycle
CLD04_RS21090	PWY-6305	putrescine biosynthesis IV
CLD04_RS21090	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CLD04_RS21100	PWY-3341	L-proline biosynthesis III
CLD04_RS21100	PWY-4981	L-proline biosynthesis II (from arginine)
CLD04_RS21100	PWY-6344	L-ornithine degradation II (Stickland reaction)
CLD04_RS21100	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CLD04_RS21180	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CLD04_RS21225	PWY-7805	CLD04_RS21225
CLD04_RS21225	PWY-7807	CLD04_RS21225
CLD04_RS21250	PWY-7805	CLD04_RS21250
CLD04_RS21250	PWY-7807	CLD04_RS21250