CLD04_RS00005 SM00382 ATPases associated with a variety of cellular activities CLD04_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CLD04_RS00010 SM00480 DNA polymerase III beta subunit CLD04_RS00030 SM00387 Histidine kinase-like ATPases CLD04_RS00030 SM00433 TopoisomeraseII CLD04_RS00035 SM00434 DNA Topoisomerase IV CLD04_RS00070 SM00116 Domain in cystathionine beta-synthase and other proteins. CLD04_RS00070 SM01240 CLD04_RS00070 CLD04_RS00075 SM00936 Penicillin-binding protein 5, C-terminal domain CLD04_RS00115 SM00257 Lysin motif CLD04_RS00115 SM00636 CLD04_RS00115 CLD04_RS00135 SM00382 ATPases associated with a variety of cellular activities CLD04_RS00145 SM00493 CLD04_RS00145 CLD04_RS00240 SM00465 GIY-YIG type nucleases (URI domain) CLD04_RS00250 SM00966 SpoVT / AbrB like domain CLD04_RS00265 SM01208 CLD04_RS00265 CLD04_RS00270 SM00493 CLD04_RS00270 CLD04_RS00275 SM00650 Ribosomal RNA adenine dimethylases CLD04_RS00320 SM01400 CLD04_RS00320 CLD04_RS00340 SM00487 DEAD-like helicases superfamily CLD04_RS00340 SM00490 helicase superfamily c-terminal domain CLD04_RS00340 SM00982 CLD04_RS00340 CLD04_RS00340 SM01058 CarD-like/TRCF domain CLD04_RS00345 SM00966 SpoVT / AbrB like domain CLD04_RS00360 SM00363 S4 RNA-binding domain CLD04_RS00380 SM00316 Ribosomal protein S1-like RNA-binding domain CLD04_RS00395 SM00331 Sigma factor PP2C-like phosphatases CLD04_RS00395 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CLD04_RS00405 SM00220 Serine/Threonine protein kinases, catalytic domain CLD04_RS00410 SM00977 TilS substrate C-terminal domain CLD04_RS00420 SM00382 ATPases associated with a variety of cellular activities CLD04_RS00465 SM00905 Dihydroneopterin aldolase CLD04_RS00475 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS00580 SM00382 ATPases associated with a variety of cellular activities CLD04_RS00580 SM01086 C-terminal, D2-small domain, of ClpB protein CLD04_RS00585 SM00382 ATPases associated with a variety of cellular activities CLD04_RS00595 SM00670 Large family of predicted nucleotide-binding domains CLD04_RS00625 SM00840 CLD04_RS00625 CLD04_RS00630 SM00535 Ribonuclease III family CLD04_RS00635 SM00967 RNA 2'-O ribose methyltransferase substrate binding CLD04_RS00660 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CLD04_RS00660 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CLD04_RS00665 SM00649 Ribosomal protein L11/L12 CLD04_RS00695 SM00663 RNA polymerase I subunit A N-terminus CLD04_RS00715 SM00838 Elongation factor G C-terminus CLD04_RS00715 SM00889 Elongation factor G, domain IV CLD04_RS00730 SM01403 CLD04_RS00730 CLD04_RS00750 SM01382 CLD04_RS00750 CLD04_RS00750 SM01383 CLD04_RS00750 CLD04_RS00765 SM00322 K homology RNA-binding domain CLD04_RS00785 SM01374 CLD04_RS00785 CLD04_RS00790 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CLD04_RS00855 SM00316 Ribosomal protein S1-like RNA-binding domain CLD04_RS00875 SM00662 RNA polymerases D CLD04_RS00885 SM00382 ATPases associated with a variety of cellular activities CLD04_RS00890 SM00382 ATPases associated with a variety of cellular activities CLD04_RS00930 SM00646 CLD04_RS00930 CLD04_RS00945 SM01251 CLD04_RS00945 CLD04_RS00995 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS01000 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS01125 SM00470 ParB-like nuclease domain CLD04_RS01235 SM00257 Lysin motif CLD04_RS01300 SM00257 Lysin motif CLD04_RS01300 SM00644 CLD04_RS01300 CLD04_RS01305 SM00860 SMI1 / KNR4 family CLD04_RS01320 SM00028 Tetratricopeptide repeats CLD04_RS01425 SM00342 helix_turn_helix, arabinose operon control protein CLD04_RS01535 SM00478 endonuclease III CLD04_RS01575 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS01660 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS01685 SM00342 helix_turn_helix, arabinose operon control protein CLD04_RS01735 SM00450 Rhodanese Homology Domain CLD04_RS01755 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS01755 SM00866 CLD04_RS01755 CLD04_RS01795 SM00387 Histidine kinase-like ATPases CLD04_RS01800 SM00448 cheY-homologous receiver domain CLD04_RS01805 SM01130 CLD04_RS01805 CLD04_RS01820 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CLD04_RS01825 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS01825 SM00895 CLD04_RS01825 CLD04_RS01850 SM00448 cheY-homologous receiver domain CLD04_RS01850 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS01855 SM00387 Histidine kinase-like ATPases CLD04_RS01855 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS01860 SM00382 ATPases associated with a variety of cellular activities CLD04_RS01885 SM00873 B3/4 domain CLD04_RS01910 SM00859 Semialdehyde dehydrogenase, NAD binding domain CLD04_RS01925 SM01236 CLD04_RS01925 CLD04_RS01945 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS01995 SM00870 CLD04_RS01995 CLD04_RS02020 SM00448 cheY-homologous receiver domain CLD04_RS02020 SM00850 LytTr DNA-binding domain CLD04_RS02025 SM00382 ATPases associated with a variety of cellular activities CLD04_RS02060 SM00028 Tetratricopeptide repeats CLD04_RS02070 SM00642 Alpha-amylase domain CLD04_RS02080 SM00382 ATPases associated with a variety of cellular activities CLD04_RS02135 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLD04_RS02140 SM00116 Domain in cystathionine beta-synthase and other proteins. CLD04_RS02140 SM00382 ATPases associated with a variety of cellular activities CLD04_RS02295 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CLD04_RS02335 SM00062 Bacterial periplasmic substrate-binding proteins CLD04_RS02365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLD04_RS02365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS02375 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CLD04_RS02385 SM00823 Phosphopantetheine attachment site CLD04_RS02405 SM00823 Phosphopantetheine attachment site CLD04_RS02405 SM01294 CLD04_RS02405 CLD04_RS02410 SM00823 Phosphopantetheine attachment site CLD04_RS02435 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS02450 SM00382 ATPases associated with a variety of cellular activities CLD04_RS02460 SM00062 Bacterial periplasmic substrate-binding proteins CLD04_RS02500 SM00710 Parallel beta-helix repeats CLD04_RS02500 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CLD04_RS02525 SM00382 ATPases associated with a variety of cellular activities CLD04_RS02535 SM00448 cheY-homologous receiver domain CLD04_RS02535 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS02540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS02540 SM00387 Histidine kinase-like ATPases CLD04_RS02540 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS02545 SM00028 Tetratricopeptide repeats CLD04_RS02580 SM00382 ATPases associated with a variety of cellular activities CLD04_RS02610 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLD04_RS02615 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS02650 SM00420 helix_turn_helix, Deoxyribose operon repressor CLD04_RS02675 SM01329 CLD04_RS02675 CLD04_RS02720 SM00796 Allophanate hydrolase subunit 1 CLD04_RS02725 SM00797 Allophanate hydrolase subunit 2 CLD04_RS02730 SM00346 helix_turn_helix isocitrate lyase regulation CLD04_RS02805 SM00344 helix_turn_helix ASNC type CLD04_RS02810 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLD04_RS02810 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLD04_RS02810 SM00493 CLD04_RS02810 CLD04_RS02890 SM00091 PAS domain CLD04_RS02890 SM00387 Histidine kinase-like ATPases CLD04_RS02895 SM00448 cheY-homologous receiver domain CLD04_RS02910 SM00382 ATPases associated with a variety of cellular activities CLD04_RS02965 SM00487 DEAD-like helicases superfamily CLD04_RS02965 SM00490 helicase superfamily c-terminal domain CLD04_RS02995 SM01005 Alanine racemase, C-terminal domain CLD04_RS03020 SM00387 Histidine kinase-like ATPases CLD04_RS03025 SM00331 Sigma factor PP2C-like phosphatases CLD04_RS03045 SM00331 Sigma factor PP2C-like phosphatases CLD04_RS03045 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CLD04_RS03050 SM00316 Ribosomal protein S1-like RNA-binding domain CLD04_RS03050 SM00732 Likely ribonuclease with RNase H fold. CLD04_RS03060 SM00731 SprT homologues. CLD04_RS03110 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS03225 SM00028 Tetratricopeptide repeats CLD04_RS03245 SM00860 SMI1 / KNR4 family CLD04_RS03255 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS03270 SM00357 Cold shock protein domain CLD04_RS03275 SM01058 CarD-like/TRCF domain CLD04_RS03290 SM00342 helix_turn_helix, arabinose operon control protein CLD04_RS03300 SM00342 helix_turn_helix, arabinose operon control protein CLD04_RS03300 SM00871 Bacterial transcription activator, effector binding domain CLD04_RS03305 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS03345 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS03370 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLD04_RS03380 SM00226 Low molecular weight phosphatase family CLD04_RS03395 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS03405 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLD04_RS03425 SM00387 Histidine kinase-like ATPases CLD04_RS03430 SM00421 helix_turn_helix, Lux Regulon CLD04_RS03430 SM00448 cheY-homologous receiver domain CLD04_RS03450 SM00422 helix_turn_helix, mercury resistance CLD04_RS03450 SM00871 Bacterial transcription activator, effector binding domain CLD04_RS03560 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS03575 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS03575 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLD04_RS03590 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS03590 SM00895 CLD04_RS03590 CLD04_RS03595 SM00257 Lysin motif CLD04_RS03595 SM00636 CLD04_RS03595 CLD04_RS03610 SM00098 Alkaline phosphatase homologues CLD04_RS03630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLD04_RS03665 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS03665 SM00866 CLD04_RS03665 CLD04_RS03750 SM00382 ATPases associated with a variety of cellular activities CLD04_RS03760 SM00881 CoA binding domain CLD04_RS03790 SM00883 Chaperonin 10 Kd subunit CLD04_RS03815 SM00028 Tetratricopeptide repeats CLD04_RS03815 SM00382 ATPases associated with a variety of cellular activities CLD04_RS03820 SM00829 Enoylreductase CLD04_RS03865 SM00829 Enoylreductase CLD04_RS03930 SM00460 Transglutaminase/protease-like homologues CLD04_RS03970 SM01001 AIR carboxylase CLD04_RS03980 SM00998 Adenylosuccinate lyase C-terminus CLD04_RS03995 SM01211 CLD04_RS03995 CLD04_RS04020 SM00798 AICARFT/IMPCHase bienzyme CLD04_RS04020 SM00851 MGS-like domain CLD04_RS04025 SM01209 CLD04_RS04025 CLD04_RS04025 SM01210 CLD04_RS04025 CLD04_RS04030 SM00344 helix_turn_helix ASNC type CLD04_RS04075 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLD04_RS04075 SM00292 breast cancer carboxy-terminal domain CLD04_RS04075 SM00532 Ligase N family CLD04_RS04115 SM00845 GatB domain CLD04_RS04130 SM00046 Diacylglycerol kinase catalytic domain (presumed) CLD04_RS04155 SM00487 DEAD-like helicases superfamily CLD04_RS04160 SM00974 CLD04_RS04160 CLD04_RS04190 SM00028 Tetratricopeptide repeats CLD04_RS04255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS04255 SM00342 helix_turn_helix, arabinose operon control protein CLD04_RS04280 SM00342 helix_turn_helix, arabinose operon control protein CLD04_RS04385 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS04455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLD04_RS04460 SM00382 ATPases associated with a variety of cellular activities CLD04_RS04470 SM00422 helix_turn_helix, mercury resistance CLD04_RS04490 SM00382 ATPases associated with a variety of cellular activities CLD04_RS04495 SM00487 DEAD-like helicases superfamily CLD04_RS04495 SM00490 helicase superfamily c-terminal domain CLD04_RS04505 SM00829 Enoylreductase CLD04_RS04510 SM00382 ATPases associated with a variety of cellular activities CLD04_RS04545 SM00656 CLD04_RS04545 CLD04_RS04555 SM00387 Histidine kinase-like ATPases CLD04_RS04560 SM00448 cheY-homologous receiver domain CLD04_RS04575 SM00849 Metallo-beta-lactamase superfamily CLD04_RS04650 SM00642 Alpha-amylase domain CLD04_RS04655 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS04655 SM00866 CLD04_RS04655 CLD04_RS04685 SM00226 Low molecular weight phosphatase family CLD04_RS04745 SM00478 endonuclease III CLD04_RS04780 SM00861 Transketolase, pyrimidine binding domain CLD04_RS04795 SM00382 ATPases associated with a variety of cellular activities CLD04_RS04845 SM00382 ATPases associated with a variety of cellular activities CLD04_RS04850 SM00382 ATPases associated with a variety of cellular activities CLD04_RS04865 SM00342 helix_turn_helix, arabinose operon control protein CLD04_RS04885 SM00387 Histidine kinase-like ATPases CLD04_RS04890 SM00421 helix_turn_helix, Lux Regulon CLD04_RS04890 SM00448 cheY-homologous receiver domain CLD04_RS04900 SM00382 ATPases associated with a variety of cellular activities CLD04_RS04945 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS05025 SM00287 Bacterial SH3 domain homologues CLD04_RS05055 SM00478 endonuclease III CLD04_RS05055 SM00525 CLD04_RS05055 CLD04_RS05085 SM00382 ATPases associated with a variety of cellular activities CLD04_RS05255 SM01060 CLD04_RS05255 CLD04_RS05260 SM00382 ATPases associated with a variety of cellular activities CLD04_RS05265 SM00062 Bacterial periplasmic substrate-binding proteins CLD04_RS05295 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS05310 SM00567 E-Z type HEAT repeats CLD04_RS05340 SM00763 PrkA AAA domain CLD04_RS05350 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS05385 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS05390 SM00382 ATPases associated with a variety of cellular activities CLD04_RS05395 SM00382 ATPases associated with a variety of cellular activities CLD04_RS05405 SM00357 Cold shock protein domain CLD04_RS05420 SM00267 diguanylate cyclase CLD04_RS05450 SM00318 Staphylococcal nuclease homologues CLD04_RS05460 SM00363 S4 RNA-binding domain CLD04_RS05470 SM00116 Domain in cystathionine beta-synthase and other proteins. CLD04_RS05515 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLD04_RS05515 SM00387 Histidine kinase-like ATPases CLD04_RS05520 SM00421 helix_turn_helix, Lux Regulon CLD04_RS05520 SM00448 cheY-homologous receiver domain CLD04_RS05540 SM00257 Lysin motif CLD04_RS05560 SM00098 Alkaline phosphatase homologues CLD04_RS05565 SM00257 Lysin motif CLD04_RS05595 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS05625 SM00563 Phosphate acyltransferases CLD04_RS05635 SM01091 Transporter associated domain CLD04_RS05640 SM00422 helix_turn_helix, mercury resistance CLD04_RS05650 SM01091 Transporter associated domain CLD04_RS05710 SM00382 ATPases associated with a variety of cellular activities CLD04_RS05715 SM00382 ATPases associated with a variety of cellular activities CLD04_RS05770 SM00729 Elongator protein 3, MiaB family, Radical SAM CLD04_RS05800 SM00382 ATPases associated with a variety of cellular activities CLD04_RS05820 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLD04_RS05860 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS05890 SM00382 ATPases associated with a variety of cellular activities CLD04_RS05975 SM01022 CLD04_RS05975 CLD04_RS05990 SM00849 Metallo-beta-lactamase superfamily CLD04_RS06030 SM00829 Enoylreductase CLD04_RS06040 SM00855 Phosphoglycerate mutase family CLD04_RS06060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLD04_RS06075 SM00914 CLD04_RS06075 CLD04_RS06090 SM00894 Excalibur calcium-binding domain CLD04_RS06125 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS06150 SM00354 helix_turn _helix lactose operon repressor CLD04_RS06285 SM00342 helix_turn_helix, arabinose operon control protein CLD04_RS06290 SM00354 helix_turn _helix lactose operon repressor CLD04_RS06310 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS06355 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CLD04_RS06470 SM00316 Ribosomal protein S1-like RNA-binding domain CLD04_RS06480 SM00752 Horizontally Transferred TransMembrane Domain CLD04_RS06560 SM00859 Semialdehyde dehydrogenase, NAD binding domain CLD04_RS06580 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CLD04_RS06585 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLD04_RS06635 SM00825 Beta-ketoacyl synthase CLD04_RS06645 SM00382 ATPases associated with a variety of cellular activities CLD04_RS06650 SM00382 ATPases associated with a variety of cellular activities CLD04_RS06695 SM00382 ATPases associated with a variety of cellular activities CLD04_RS06700 SM00382 ATPases associated with a variety of cellular activities CLD04_RS06765 SM01118 CLD04_RS06765 CLD04_RS06775 SM00954 Region found in RelA / SpoT proteins CLD04_RS07045 SM00860 SMI1 / KNR4 family CLD04_RS07140 SM00635 Bacterial Ig-like domain 2 CLD04_RS07285 SM00382 ATPases associated with a variety of cellular activities CLD04_RS07295 SM00835 Cupin CLD04_RS07325 SM00829 Enoylreductase CLD04_RS07345 SM00354 helix_turn _helix lactose operon repressor CLD04_RS07355 SM00858 CLD04_RS07355 CLD04_RS07370 SM00382 ATPases associated with a variety of cellular activities CLD04_RS07375 SM00028 Tetratricopeptide repeats CLD04_RS07390 SM00257 Lysin motif CLD04_RS07390 SM00644 CLD04_RS07390 CLD04_RS07415 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS07430 SM00382 ATPases associated with a variety of cellular activities CLD04_RS07530 SM00257 Lysin motif CLD04_RS07595 SM00257 Lysin motif CLD04_RS07595 SM00644 CLD04_RS07595 CLD04_RS07640 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLD04_RS07665 SM00382 ATPases associated with a variety of cellular activities CLD04_RS07680 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CLD04_RS07690 SM00382 ATPases associated with a variety of cellular activities CLD04_RS07750 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CLD04_RS07765 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS07785 SM00855 Phosphoglycerate mutase family CLD04_RS07810 SM00382 ATPases associated with a variety of cellular activities CLD04_RS07825 SM00448 cheY-homologous receiver domain CLD04_RS07825 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS07830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS07830 SM00387 Histidine kinase-like ATPases CLD04_RS07830 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS07855 SM00116 Domain in cystathionine beta-synthase and other proteins. CLD04_RS07855 SM00924 MgtE intracellular N domain CLD04_RS07860 SM00422 helix_turn_helix, mercury resistance CLD04_RS07875 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS07910 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CLD04_RS07915 SM00052 Putative diguanylate phosphodiesterase CLD04_RS07915 SM00267 diguanylate cyclase CLD04_RS07975 SM00091 PAS domain CLD04_RS07975 SM00387 Histidine kinase-like ATPases CLD04_RS07975 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS08015 SM01007 Class II Aldolase and Adducin N-terminal domain CLD04_RS08040 SM00387 Histidine kinase-like ATPases CLD04_RS08040 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS08045 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS08060 SM00382 ATPases associated with a variety of cellular activities CLD04_RS08060 SM01086 C-terminal, D2-small domain, of ClpB protein CLD04_RS08095 SM00822 CLD04_RS08095 CLD04_RS08100 SM00257 Lysin motif CLD04_RS08105 SM00257 Lysin motif CLD04_RS08110 SM00636 CLD04_RS08110 CLD04_RS08160 SM00354 helix_turn _helix lactose operon repressor CLD04_RS08165 SM01061 CAT RNA binding domain CLD04_RS08205 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLD04_RS08205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS08225 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLD04_RS08225 SM00091 PAS domain CLD04_RS08225 SM00387 Histidine kinase-like ATPases CLD04_RS08225 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS08240 SM00260 Two component signalling adaptor domain CLD04_RS08240 SM00448 cheY-homologous receiver domain CLD04_RS08255 SM00257 Lysin motif CLD04_RS08270 SM00052 Putative diguanylate phosphodiesterase CLD04_RS08375 SM00852 Probable molybdopterin binding domain CLD04_RS08395 SM00382 ATPases associated with a variety of cellular activities CLD04_RS08400 SM00382 ATPases associated with a variety of cellular activities CLD04_RS08415 SM00382 ATPases associated with a variety of cellular activities CLD04_RS08420 SM01066 Carbohydrate binding domain CLD04_RS08425 SM00420 helix_turn_helix, Deoxyribose operon repressor CLD04_RS08425 SM01134 CLD04_RS08425 CLD04_RS08450 SM00382 ATPases associated with a variety of cellular activities CLD04_RS08475 SM00966 SpoVT / AbrB like domain CLD04_RS08480 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLD04_RS08480 SM00091 PAS domain CLD04_RS08480 SM00387 Histidine kinase-like ATPases CLD04_RS08480 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS08500 SM00849 Metallo-beta-lactamase superfamily CLD04_RS08535 SM00861 Transketolase, pyrimidine binding domain CLD04_RS08630 SM00838 Elongation factor G C-terminus CLD04_RS08650 SM00670 Large family of predicted nucleotide-binding domains CLD04_RS08675 SM00878 Biotin carboxylase C-terminal domain CLD04_RS08720 SM00116 Domain in cystathionine beta-synthase and other proteins. CLD04_RS08770 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLD04_RS08830 SM00740 CLD04_RS08830 CLD04_RS08835 SM00740 CLD04_RS08835 CLD04_RS08890 SM00842 Cell division protein FtsA CLD04_RS08895 SM00864 Tubulin/FtsZ family, GTPase domain CLD04_RS08895 SM00865 Tubulin/FtsZ family, C-terminal domain CLD04_RS08960 SM00823 Phosphopantetheine attachment site CLD04_RS08995 SM00382 ATPases associated with a variety of cellular activities CLD04_RS09030 SM00363 S4 RNA-binding domain CLD04_RS09055 SM00363 S4 RNA-binding domain CLD04_RS09080 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CLD04_RS09085 SM00851 MGS-like domain CLD04_RS09085 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLD04_RS09085 SM01209 CLD04_RS09085 CLD04_RS09100 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CLD04_RS09150 SM00831 Cation transporter/ATPase, N-terminus CLD04_RS09165 SM00072 Guanylate kinase homologues. CLD04_RS09170 SM01409 CLD04_RS09170 CLD04_RS09180 SM00487 DEAD-like helicases superfamily CLD04_RS09180 SM00490 helicase superfamily c-terminal domain CLD04_RS09205 SM00331 Sigma factor PP2C-like phosphatases CLD04_RS09205 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CLD04_RS09210 SM00220 Serine/Threonine protein kinases, catalytic domain CLD04_RS09210 SM00740 CLD04_RS09210 CLD04_RS09225 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CLD04_RS09245 SM01120 CLD04_RS09245 CLD04_RS09245 SM01121 CLD04_RS09245 CLD04_RS09260 SM00487 DEAD-like helicases superfamily CLD04_RS09260 SM00490 helicase superfamily c-terminal domain CLD04_RS09275 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CLD04_RS09280 SM00822 CLD04_RS09280 CLD04_RS09290 SM00358 Double-stranded RNA binding motif CLD04_RS09290 SM00535 Ribonuclease III family CLD04_RS09295 SM00968 SMC proteins Flexible Hinge Domain CLD04_RS09300 SM00382 ATPases associated with a variety of cellular activities CLD04_RS09300 SM00962 SRP54-type protein, GTPase domain CLD04_RS09300 SM00963 SRP54-type protein, helical bundle domain CLD04_RS09320 SM00382 ATPases associated with a variety of cellular activities CLD04_RS09320 SM00962 SRP54-type protein, GTPase domain CLD04_RS09320 SM00963 SRP54-type protein, helical bundle domain CLD04_RS09380 SM00881 CoA binding domain CLD04_RS09390 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLD04_RS09390 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLD04_RS09390 SM00493 CLD04_RS09390 CLD04_RS09410 SM00382 ATPases associated with a variety of cellular activities CLD04_RS09410 SM01086 C-terminal, D2-small domain, of ClpB protein CLD04_RS09450 SM00382 ATPases associated with a variety of cellular activities CLD04_RS09500 SM00448 cheY-homologous receiver domain CLD04_RS09535 SM00962 SRP54-type protein, GTPase domain CLD04_RS09545 SM00448 cheY-homologous receiver domain CLD04_RS09550 SM00073 Histidine Phosphotransfer domain CLD04_RS09550 SM00260 Two component signalling adaptor domain CLD04_RS09550 SM00387 Histidine kinase-like ATPases CLD04_RS09550 SM01231 CLD04_RS09550 CLD04_RS09555 SM00260 Two component signalling adaptor domain CLD04_RS09615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLD04_RS09625 SM00479 CLD04_RS09625 CLD04_RS09625 SM00481 DNA polymerase alpha chain like domain CLD04_RS09635 SM00316 Ribosomal protein S1-like RNA-binding domain CLD04_RS09635 SM00322 K homology RNA-binding domain CLD04_RS09670 SM00904 Riboflavin kinase CLD04_RS09675 SM01387 CLD04_RS09675 CLD04_RS09680 SM00316 Ribosomal protein S1-like RNA-binding domain CLD04_RS09680 SM00322 K homology RNA-binding domain CLD04_RS09710 SM00859 Semialdehyde dehydrogenase, NAD binding domain CLD04_RS09720 SM01130 CLD04_RS09720 CLD04_RS09725 SM00849 Metallo-beta-lactamase superfamily CLD04_RS09740 SM00382 ATPases associated with a variety of cellular activities CLD04_RS09740 SM00843 CLD04_RS09740 CLD04_RS09745 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS09745 SM00866 CLD04_RS09745 CLD04_RS09780 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS09790 SM00852 Probable molybdopterin binding domain CLD04_RS09795 SM00382 ATPases associated with a variety of cellular activities CLD04_RS09805 SM00322 K homology RNA-binding domain CLD04_RS09805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLD04_RS09820 SM00829 Enoylreductase CLD04_RS09830 SM00729 Elongator protein 3, MiaB family, Radical SAM CLD04_RS09845 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLD04_RS09845 SM00534 ATPase domain of DNA mismatch repair MUTS family CLD04_RS09850 SM00853 MutL C terminal dimerisation domain CLD04_RS09850 SM01340 CLD04_RS09850 CLD04_RS09875 SM00849 Metallo-beta-lactamase superfamily CLD04_RS09960 SM00646 CLD04_RS09960 CLD04_RS09970 SM00382 ATPases associated with a variety of cellular activities CLD04_RS09985 SM00422 helix_turn_helix, mercury resistance CLD04_RS09990 SM01230 CLD04_RS09990 CLD04_RS10040 SM00860 SMI1 / KNR4 family CLD04_RS10155 SM00318 Staphylococcal nuclease homologues CLD04_RS10165 SM01005 Alanine racemase, C-terminal domain CLD04_RS10305 SM00257 Lysin motif CLD04_RS10310 SM00857 Resolvase, N terminal domain CLD04_RS10320 SM00861 Transketolase, pyrimidine binding domain CLD04_RS10345 SM00448 cheY-homologous receiver domain CLD04_RS10415 SM01207 CLD04_RS10415 CLD04_RS10420 SM00881 CoA binding domain CLD04_RS10425 SM00387 Histidine kinase-like ATPases CLD04_RS10425 SM00433 TopoisomeraseII CLD04_RS10430 SM00434 DNA Topoisomerase IV CLD04_RS10445 SM01067 Cellulose binding domain CLD04_RS10460 SM00606 Cellulose Binding Domain Type IV CLD04_RS10505 SM00878 Biotin carboxylase C-terminal domain CLD04_RS10535 SM00823 Phosphopantetheine attachment site CLD04_RS10535 SM00824 Thioesterase CLD04_RS10585 SM00829 Enoylreductase CLD04_RS10605 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CLD04_RS10620 SM00822 CLD04_RS10620 CLD04_RS10655 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CLD04_RS10680 SM00354 helix_turn _helix lactose operon repressor CLD04_RS10700 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLD04_RS10700 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS10720 SM00656 CLD04_RS10720 CLD04_RS10765 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS10925 SM00028 Tetratricopeptide repeats CLD04_RS10970 SM00860 SMI1 / KNR4 family CLD04_RS10975 SM00860 SMI1 / KNR4 family CLD04_RS10985 SM00860 SMI1 / KNR4 family CLD04_RS11000 SM00342 helix_turn_helix, arabinose operon control protein CLD04_RS11015 SM00849 Metallo-beta-lactamase superfamily CLD04_RS11020 SM00871 Bacterial transcription activator, effector binding domain CLD04_RS11035 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLD04_RS11075 SM00421 helix_turn_helix, Lux Regulon CLD04_RS11075 SM00448 cheY-homologous receiver domain CLD04_RS11080 SM00257 Lysin motif CLD04_RS11085 SM00341 Helicase and RNase D C-terminal CLD04_RS11085 SM00487 DEAD-like helicases superfamily CLD04_RS11085 SM00490 helicase superfamily c-terminal domain CLD04_RS11085 SM00956 CLD04_RS11085 CLD04_RS11175 SM00861 Transketolase, pyrimidine binding domain CLD04_RS11180 SM00327 von Willebrand factor (vWF) type A domain CLD04_RS11185 SM00382 ATPases associated with a variety of cellular activities CLD04_RS11195 SM00257 Lysin motif CLD04_RS11295 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLD04_RS11295 SM00245 tail specific protease CLD04_RS11330 SM00014 Acid phosphatase homologues CLD04_RS11380 SM00882 Coenzyme A transferase CLD04_RS11385 SM00882 Coenzyme A transferase CLD04_RS11445 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS11485 SM00382 ATPases associated with a variety of cellular activities CLD04_RS11535 SM00567 E-Z type HEAT repeats CLD04_RS11535 SM00932 Scaffold protein Nfu/NifU N terminal CLD04_RS11540 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLD04_RS11560 SM00357 Cold shock protein domain CLD04_RS11600 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CLD04_RS11600 SM00475 5'-3' exonuclease CLD04_RS11665 SM00354 helix_turn _helix lactose operon repressor CLD04_RS11680 SM00491 CLD04_RS11680 CLD04_RS11695 SM00981 CLD04_RS11695 CLD04_RS11725 SM00487 DEAD-like helicases superfamily CLD04_RS11725 SM00490 helicase superfamily c-terminal domain CLD04_RS11785 SM00478 endonuclease III CLD04_RS11785 SM00525 CLD04_RS11785 CLD04_RS11815 SM00479 CLD04_RS11815 CLD04_RS11815 SM00487 DEAD-like helicases superfamily CLD04_RS11815 SM00491 CLD04_RS11815 CLD04_RS11855 SM00851 MGS-like domain CLD04_RS11905 SM00914 CLD04_RS11905 CLD04_RS11910 SM00028 Tetratricopeptide repeats CLD04_RS11975 SM00138 Methyltransferase, chemotaxis proteins CLD04_RS11980 SM00562 CLD04_RS11980 CLD04_RS12010 SM00411 bacterial (prokaryotic) histone like domain CLD04_RS12065 SM01240 CLD04_RS12065 CLD04_RS12070 SM00316 Ribosomal protein S1-like RNA-binding domain CLD04_RS12110 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLD04_RS12130 SM00257 Lysin motif CLD04_RS12140 SM00487 DEAD-like helicases superfamily CLD04_RS12140 SM00490 helicase superfamily c-terminal domain CLD04_RS12180 SM00091 PAS domain CLD04_RS12180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS12180 SM00387 Histidine kinase-like ATPases CLD04_RS12180 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS12185 SM00448 cheY-homologous receiver domain CLD04_RS12185 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS12205 SM00363 S4 RNA-binding domain CLD04_RS12355 SM00387 Histidine kinase-like ATPases CLD04_RS12365 SM00936 Penicillin-binding protein 5, C-terminal domain CLD04_RS12405 SM00919 Malic enzyme, NAD binding domain CLD04_RS12405 SM01274 CLD04_RS12405 CLD04_RS12420 SM00870 CLD04_RS12420 CLD04_RS12425 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS12530 SM00849 Metallo-beta-lactamase superfamily CLD04_RS12560 SM00849 Metallo-beta-lactamase superfamily CLD04_RS12570 SM01350 CLD04_RS12570 CLD04_RS12620 SM00382 ATPases associated with a variety of cellular activities CLD04_RS12630 SM00062 Bacterial periplasmic substrate-binding proteins CLD04_RS12630 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CLD04_RS12640 SM00046 Diacylglycerol kinase catalytic domain (presumed) CLD04_RS12650 SM00422 helix_turn_helix, mercury resistance CLD04_RS12660 SM00861 Transketolase, pyrimidine binding domain CLD04_RS12680 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLD04_RS12690 SM00091 PAS domain CLD04_RS12690 SM00382 ATPases associated with a variety of cellular activities CLD04_RS12735 SM00646 CLD04_RS12735 CLD04_RS12750 SM00448 cheY-homologous receiver domain CLD04_RS12755 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLD04_RS12770 SM00363 S4 RNA-binding domain CLD04_RS12775 SM00861 Transketolase, pyrimidine binding domain CLD04_RS12810 SM00878 Biotin carboxylase C-terminal domain CLD04_RS12855 SM00382 ATPases associated with a variety of cellular activities CLD04_RS12865 SM00841 Elongation factor P, C-terminal CLD04_RS12865 SM01185 CLD04_RS12865 CLD04_RS12900 SM00529 Helix-turn-helix diphteria tox regulatory element CLD04_RS12910 SM00450 Rhodanese Homology Domain CLD04_RS12930 SM00487 DEAD-like helicases superfamily CLD04_RS12930 SM00490 helicase superfamily c-terminal domain CLD04_RS12945 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS13005 SM00382 ATPases associated with a variety of cellular activities CLD04_RS13020 SM01091 Transporter associated domain CLD04_RS13045 SM00849 Metallo-beta-lactamase superfamily CLD04_RS13065 SM00631 CLD04_RS13065 CLD04_RS13085 SM00028 Tetratricopeptide repeats CLD04_RS13125 SM00382 ATPases associated with a variety of cellular activities CLD04_RS13130 SM00382 ATPases associated with a variety of cellular activities CLD04_RS13175 SM00257 Lysin motif CLD04_RS13210 SM00518 AP endonuclease family 2 CLD04_RS13215 SM00487 DEAD-like helicases superfamily CLD04_RS13215 SM00490 helicase superfamily c-terminal domain CLD04_RS13260 SM00400 zinc finger CLD04_RS13260 SM00493 CLD04_RS13260 CLD04_RS13275 SM00116 Domain in cystathionine beta-synthase and other proteins. CLD04_RS13320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLD04_RS13370 SM00729 Elongator protein 3, MiaB family, Radical SAM CLD04_RS13385 SM00271 DnaJ molecular chaperone homology domain CLD04_RS13405 SM00729 Elongator protein 3, MiaB family, Radical SAM CLD04_RS13410 SM00838 Elongation factor G C-terminus CLD04_RS13445 SM00849 Metallo-beta-lactamase superfamily CLD04_RS13455 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLD04_RS13475 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLD04_RS13485 SM01103 CLD04_RS13485 CLD04_RS13525 SM01350 CLD04_RS13525 CLD04_RS13580 SM00450 Rhodanese Homology Domain CLD04_RS13625 SM00422 helix_turn_helix, mercury resistance CLD04_RS13640 SM01091 Transporter associated domain CLD04_RS13700 SM00344 helix_turn_helix ASNC type CLD04_RS13820 SM00287 Bacterial SH3 domain homologues CLD04_RS13860 SM00422 helix_turn_helix, mercury resistance CLD04_RS13865 SM00829 Enoylreductase CLD04_RS13875 SM00640 Glycosyl hydrolases family 32 CLD04_RS13900 SM00382 ATPases associated with a variety of cellular activities CLD04_RS13970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CLD04_RS13970 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLD04_RS14000 SM00650 Ribosomal RNA adenine dimethylases CLD04_RS14055 SM00732 Likely ribonuclease with RNase H fold. CLD04_RS14065 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLD04_RS14075 SM00382 ATPases associated with a variety of cellular activities CLD04_RS14080 SM00062 Bacterial periplasmic substrate-binding proteins CLD04_RS14080 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CLD04_RS14110 SM00382 ATPases associated with a variety of cellular activities CLD04_RS14115 SM00028 Tetratricopeptide repeats CLD04_RS14135 SM00382 ATPases associated with a variety of cellular activities CLD04_RS14165 SM00287 Bacterial SH3 domain homologues CLD04_RS14165 SM00646 CLD04_RS14165 CLD04_RS14175 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLD04_RS14175 SM00954 Region found in RelA / SpoT proteins CLD04_RS14230 SM01323 CLD04_RS14230 CLD04_RS14250 SM00382 ATPases associated with a variety of cellular activities CLD04_RS14255 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLD04_RS14305 SM00257 Lysin motif CLD04_RS14350 SM01317 CLD04_RS14350 CLD04_RS14445 SM00257 Lysin motif CLD04_RS14455 SM01004 Delta-aminolevulinic acid dehydratase CLD04_RS14490 SM00382 ATPases associated with a variety of cellular activities CLD04_RS14490 SM00464 Found in ATP-dependent protease La (LON) CLD04_RS14495 SM00382 ATPases associated with a variety of cellular activities CLD04_RS14500 SM00382 ATPases associated with a variety of cellular activities CLD04_RS14500 SM00994 ClpX C4-type zinc finger CLD04_RS14500 SM01086 C-terminal, D2-small domain, of ClpB protein CLD04_RS14525 SM01329 CLD04_RS14525 CLD04_RS14530 SM00917 LeuA allosteric (dimerisation) domain CLD04_RS14590 SM00909 Sporulation and spore germination CLD04_RS14600 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS14605 SM00421 helix_turn_helix, Lux Regulon CLD04_RS14650 SM00465 GIY-YIG type nucleases (URI domain) CLD04_RS14660 SM00813 Alpha-L-arabinofuranosidase C-terminus CLD04_RS14665 SM00893 Electron transfer flavoprotein domain CLD04_RS14670 SM00893 Electron transfer flavoprotein domain CLD04_RS14695 SM00463 Small MutS-related domain CLD04_RS14695 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLD04_RS14695 SM00534 ATPase domain of DNA mismatch repair MUTS family CLD04_RS14700 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLD04_RS14700 SM00481 DNA polymerase alpha chain like domain CLD04_RS14700 SM00483 DNA polymerase X family CLD04_RS14720 SM00873 B3/4 domain CLD04_RS14720 SM00874 tRNA synthetase B5 domain CLD04_RS14720 SM00896 Ferredoxin-fold anticodon binding domain CLD04_RS14735 SM00967 RNA 2'-O ribose methyltransferase substrate binding CLD04_RS14775 SM00813 Alpha-L-arabinofuranosidase C-terminus CLD04_RS14805 SM01007 Class II Aldolase and Adducin N-terminal domain CLD04_RS14875 SM00448 cheY-homologous receiver domain CLD04_RS14875 SM00850 LytTr DNA-binding domain CLD04_RS14880 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLD04_RS14880 SM00387 Histidine kinase-like ATPases CLD04_RS14890 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLD04_RS14905 SM00382 ATPases associated with a variety of cellular activities CLD04_RS14925 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLD04_RS14955 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CLD04_RS14955 SM01232 CLD04_RS14955 CLD04_RS14960 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CLD04_RS14960 SM00474 3'-5' exonuclease CLD04_RS14960 SM00475 5'-3' exonuclease CLD04_RS14960 SM00482 DNA polymerase A domain CLD04_RS14965 SM00091 PAS domain CLD04_RS14965 SM00387 Histidine kinase-like ATPases CLD04_RS14965 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS14970 SM00448 cheY-homologous receiver domain CLD04_RS14970 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS14980 SM01329 CLD04_RS14980 CLD04_RS15025 SM00919 Malic enzyme, NAD binding domain CLD04_RS15025 SM01274 CLD04_RS15025 CLD04_RS15030 SM00481 DNA polymerase alpha chain like domain CLD04_RS15060 SM00116 Domain in cystathionine beta-synthase and other proteins. CLD04_RS15075 SM00904 Riboflavin kinase CLD04_RS15095 SM00382 ATPases associated with a variety of cellular activities CLD04_RS15110 SM00062 Bacterial periplasmic substrate-binding proteins CLD04_RS15115 SM00062 Bacterial periplasmic substrate-binding proteins CLD04_RS15130 SM00849 Metallo-beta-lactamase superfamily CLD04_RS15155 SM00852 Probable molybdopterin binding domain CLD04_RS15215 SM00981 CLD04_RS15215 CLD04_RS15245 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLD04_RS15250 SM00267 diguanylate cyclase CLD04_RS15260 SM00363 S4 RNA-binding domain CLD04_RS15260 SM01390 CLD04_RS15260 CLD04_RS15270 SM00363 S4 RNA-binding domain CLD04_RS15290 SM00116 Domain in cystathionine beta-synthase and other proteins. CLD04_RS15310 SM00354 helix_turn _helix lactose operon repressor CLD04_RS15315 SM00830 Chorismate mutase type II CLD04_RS15340 SM00382 ATPases associated with a variety of cellular activities CLD04_RS15340 SM00843 CLD04_RS15340 CLD04_RS15375 SM00919 Malic enzyme, NAD binding domain CLD04_RS15375 SM01274 CLD04_RS15375 CLD04_RS15380 SM00849 Metallo-beta-lactamase superfamily CLD04_RS15400 SM00642 Alpha-amylase domain CLD04_RS15405 SM00046 Diacylglycerol kinase catalytic domain (presumed) CLD04_RS15445 SM00382 ATPases associated with a variety of cellular activities CLD04_RS15450 SM00420 helix_turn_helix, Deoxyribose operon repressor CLD04_RS15455 SM00363 S4 RNA-binding domain CLD04_RS15530 SM00729 Elongator protein 3, MiaB family, Radical SAM CLD04_RS15530 SM00876 Biotin and Thiamin Synthesis associated domain CLD04_RS15560 SM00354 helix_turn _helix lactose operon repressor CLD04_RS15585 SM00450 Rhodanese Homology Domain CLD04_RS15600 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLD04_RS15600 SM00091 PAS domain CLD04_RS15620 SM00382 ATPases associated with a variety of cellular activities CLD04_RS15625 SM00387 Histidine kinase-like ATPases CLD04_RS15630 SM00448 cheY-homologous receiver domain CLD04_RS15630 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS15640 SM00382 ATPases associated with a variety of cellular activities CLD04_RS15655 SM00382 ATPases associated with a variety of cellular activities CLD04_RS15660 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS15670 SM00729 Elongator protein 3, MiaB family, Radical SAM CLD04_RS15730 SM00382 ATPases associated with a variety of cellular activities CLD04_RS15770 SM01234 CLD04_RS15770 CLD04_RS15775 SM00947 Carbonic anhydrase CLD04_RS15810 SM00382 ATPases associated with a variety of cellular activities CLD04_RS15825 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CLD04_RS15865 SM00984 UDP binding domain CLD04_RS15925 SM00642 Alpha-amylase domain CLD04_RS16060 SM00244 prohibitin homologues CLD04_RS16120 SM00047 Lysozyme subfamily 2 CLD04_RS16170 SM00420 helix_turn_helix, Deoxyribose operon repressor CLD04_RS16170 SM01134 CLD04_RS16170 CLD04_RS16175 SM01007 Class II Aldolase and Adducin N-terminal domain CLD04_RS16185 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLD04_RS16185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS16185 SM00319 Homologues of the ligand binding domain of Tar CLD04_RS16190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLD04_RS16190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS16190 SM00319 Homologues of the ligand binding domain of Tar CLD04_RS16195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLD04_RS16195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS16195 SM00319 Homologues of the ligand binding domain of Tar CLD04_RS16200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLD04_RS16200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS16200 SM00319 Homologues of the ligand binding domain of Tar CLD04_RS16220 SM00642 Alpha-amylase domain CLD04_RS16225 SM01091 Transporter associated domain CLD04_RS16280 SM00316 Ribosomal protein S1-like RNA-binding domain CLD04_RS16290 SM00344 helix_turn_helix ASNC type CLD04_RS16310 SM00387 Histidine kinase-like ATPases CLD04_RS16310 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS16315 SM01298 CLD04_RS16315 CLD04_RS16320 SM00479 CLD04_RS16320 CLD04_RS16350 SM00091 PAS domain CLD04_RS16350 SM00387 Histidine kinase-like ATPases CLD04_RS16355 SM00448 cheY-homologous receiver domain CLD04_RS16365 SM00382 ATPases associated with a variety of cellular activities CLD04_RS16430 SM00421 helix_turn_helix, Lux Regulon CLD04_RS16430 SM00448 cheY-homologous receiver domain CLD04_RS16460 SM00052 Putative diguanylate phosphodiesterase CLD04_RS16505 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLD04_RS16555 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CLD04_RS16555 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CLD04_RS16565 SM00923 MbtH-like protein CLD04_RS16570 SM00823 Phosphopantetheine attachment site CLD04_RS16570 SM00824 Thioesterase CLD04_RS16655 SM01240 CLD04_RS16655 CLD04_RS16755 SM00729 Elongator protein 3, MiaB family, Radical SAM CLD04_RS16835 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLD04_RS16880 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS16890 SM00873 B3/4 domain CLD04_RS16905 SM00382 ATPases associated with a variety of cellular activities CLD04_RS16910 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS16910 SM00866 CLD04_RS16910 CLD04_RS16935 SM00465 GIY-YIG type nucleases (URI domain) CLD04_RS16980 SM00382 ATPases associated with a variety of cellular activities CLD04_RS17010 SM00382 ATPases associated with a variety of cellular activities CLD04_RS17010 SM00930 CLD04_RS17010 CLD04_RS17025 SM00493 CLD04_RS17025 CLD04_RS17080 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS17110 SM00382 ATPases associated with a variety of cellular activities CLD04_RS17135 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLD04_RS17140 SM00448 cheY-homologous receiver domain CLD04_RS17140 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS17145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS17145 SM00387 Histidine kinase-like ATPases CLD04_RS17145 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS17185 SM00421 helix_turn_helix, Lux Regulon CLD04_RS17185 SM00448 cheY-homologous receiver domain CLD04_RS17190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS17190 SM00387 Histidine kinase-like ATPases CLD04_RS17225 SM00382 ATPases associated with a variety of cellular activities CLD04_RS17250 SM00387 Histidine kinase-like ATPases CLD04_RS17250 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS17255 SM00448 cheY-homologous receiver domain CLD04_RS17255 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS17275 SM00835 Cupin CLD04_RS17290 SM00382 ATPases associated with a variety of cellular activities CLD04_RS17300 SM00382 ATPases associated with a variety of cellular activities CLD04_RS17475 SM00316 Ribosomal protein S1-like RNA-binding domain CLD04_RS17475 SM00357 Cold shock protein domain CLD04_RS17475 SM00955 CLD04_RS17475 CLD04_RS17495 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS17500 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS17505 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS17515 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLD04_RS17515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS17535 SM00116 Domain in cystathionine beta-synthase and other proteins. CLD04_RS17535 SM00382 ATPases associated with a variety of cellular activities CLD04_RS17550 SM00752 Horizontally Transferred TransMembrane Domain CLD04_RS17565 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLD04_RS17585 SM00116 Domain in cystathionine beta-synthase and other proteins. CLD04_RS17585 SM00382 ATPases associated with a variety of cellular activities CLD04_RS17620 SM01192 CLD04_RS17620 CLD04_RS17620 SM01193 CLD04_RS17620 CLD04_RS17640 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLD04_RS17655 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS17685 SM00636 CLD04_RS17685 CLD04_RS17715 SM00421 helix_turn_helix, Lux Regulon CLD04_RS17740 SM00382 ATPases associated with a variety of cellular activities CLD04_RS17750 SM00331 Sigma factor PP2C-like phosphatases CLD04_RS17780 SM00354 helix_turn _helix lactose operon repressor CLD04_RS17785 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS17785 SM00895 CLD04_RS17785 CLD04_RS17880 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS17920 SM00640 Glycosyl hydrolases family 32 CLD04_RS17965 SM00642 Alpha-amylase domain CLD04_RS17995 SM00642 Alpha-amylase domain CLD04_RS18000 SM00354 helix_turn _helix lactose operon repressor CLD04_RS18020 SM00947 Carbonic anhydrase CLD04_RS18035 SM00382 ATPases associated with a variety of cellular activities CLD04_RS18040 SM00387 Histidine kinase-like ATPases CLD04_RS18045 SM00448 cheY-homologous receiver domain CLD04_RS18045 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS18095 SM00028 Tetratricopeptide repeats CLD04_RS18100 SM00382 ATPases associated with a variety of cellular activities CLD04_RS18205 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS18205 SM00866 CLD04_RS18205 CLD04_RS18245 SM00382 ATPases associated with a variety of cellular activities CLD04_RS18250 SM00487 DEAD-like helicases superfamily CLD04_RS18250 SM00490 helicase superfamily c-terminal domain CLD04_RS18275 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLD04_RS18285 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLD04_RS18285 SM00245 tail specific protease CLD04_RS18295 SM00382 ATPases associated with a variety of cellular activities CLD04_RS18315 SM00957 SecA DEAD-like domain CLD04_RS18315 SM00958 SecA preprotein cross-linking domain CLD04_RS18415 SM00487 DEAD-like helicases superfamily CLD04_RS18415 SM00490 helicase superfamily c-terminal domain CLD04_RS18425 SM00421 helix_turn_helix, Lux Regulon CLD04_RS18425 SM00448 cheY-homologous receiver domain CLD04_RS18430 SM00387 Histidine kinase-like ATPases CLD04_RS18470 SM00984 UDP binding domain CLD04_RS18495 SM00646 CLD04_RS18495 CLD04_RS18540 SM00382 ATPases associated with a variety of cellular activities CLD04_RS18610 SM00047 Lysozyme subfamily 2 CLD04_RS18610 SM00287 Bacterial SH3 domain homologues CLD04_RS18665 SM00854 Bacterial capsule synthesis protein PGA_cap CLD04_RS18680 SM00354 helix_turn _helix lactose operon repressor CLD04_RS18695 SM00382 ATPases associated with a variety of cellular activities CLD04_RS18710 SM00287 Bacterial SH3 domain homologues CLD04_RS18765 SM00903 Flavin reductase like domain CLD04_RS18780 SM00344 helix_turn_helix ASNC type CLD04_RS18845 SM00984 UDP binding domain CLD04_RS18875 SM00487 DEAD-like helicases superfamily CLD04_RS18875 SM00490 helicase superfamily c-terminal domain CLD04_RS18890 SM00420 helix_turn_helix, Deoxyribose operon repressor CLD04_RS18890 SM01134 CLD04_RS18890 CLD04_RS18915 SM00387 Histidine kinase-like ATPases CLD04_RS18930 SM00028 Tetratricopeptide repeats CLD04_RS18960 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS18970 SM00710 Parallel beta-helix repeats CLD04_RS18970 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CLD04_RS19000 SM00938 Nitrogen regulatory protein P-II CLD04_RS19005 SM00014 Acid phosphatase homologues CLD04_RS19035 SM00155 Phospholipase D. Active site motifs. CLD04_RS19040 SM00422 helix_turn_helix, mercury resistance CLD04_RS19075 SM00382 ATPases associated with a variety of cellular activities CLD04_RS19080 SM00382 ATPases associated with a variety of cellular activities CLD04_RS19110 SM00028 Tetratricopeptide repeats CLD04_RS19120 SM00729 Elongator protein 3, MiaB family, Radical SAM CLD04_RS19135 SM00327 von Willebrand factor (vWF) type A domain CLD04_RS19145 SM00327 von Willebrand factor (vWF) type A domain CLD04_RS19180 SM00382 ATPases associated with a variety of cellular activities CLD04_RS19240 SM00226 Low molecular weight phosphatase family CLD04_RS19280 SM00937 CLD04_RS19280 CLD04_RS19300 SM00919 Malic enzyme, NAD binding domain CLD04_RS19300 SM01274 CLD04_RS19300 CLD04_RS19315 SM00357 Cold shock protein domain CLD04_RS19315 SM00382 ATPases associated with a variety of cellular activities CLD04_RS19315 SM00959 Rho termination factor, N-terminal domain CLD04_RS19340 SM00448 cheY-homologous receiver domain CLD04_RS19380 SM00155 Phospholipase D. Active site motifs. CLD04_RS19400 SM00382 ATPases associated with a variety of cellular activities CLD04_RS19405 SM00155 Phospholipase D. Active site motifs. CLD04_RS19435 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CLD04_RS19450 SM00100 Cyclic nucleotide-monophosphate binding domain CLD04_RS19450 SM00419 helix_turn_helix, cAMP Regulatory protein CLD04_RS19460 SM00836 DALR anticodon binding domain CLD04_RS19460 SM01016 Arginyl tRNA synthetase N terminal dom CLD04_RS19480 SM00729 Elongator protein 3, MiaB family, Radical SAM CLD04_RS19530 SM00028 Tetratricopeptide repeats CLD04_RS19580 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS19585 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLD04_RS19605 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLD04_RS19700 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLD04_RS19740 SM00858 CLD04_RS19740 CLD04_RS19795 SM00986 Uracil DNA glycosylase superfamily CLD04_RS19795 SM00987 UreE urease accessory protein, C-terminal domain CLD04_RS19830 SM00640 Glycosyl hydrolases family 32 CLD04_RS19845 SM01061 CAT RNA binding domain CLD04_RS20000 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CLD04_RS20025 SM01061 CAT RNA binding domain CLD04_RS20040 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS20055 SM00530 Helix-turn-helix XRE-family like proteins CLD04_RS20070 SM00954 Region found in RelA / SpoT proteins CLD04_RS20165 SM01060 CLD04_RS20165 CLD04_RS20180 SM00382 ATPases associated with a variety of cellular activities CLD04_RS20215 SM00382 ATPases associated with a variety of cellular activities CLD04_RS20220 SM00382 ATPases associated with a variety of cellular activities CLD04_RS20255 SM00382 ATPases associated with a variety of cellular activities CLD04_RS20295 SM00421 helix_turn_helix, Lux Regulon CLD04_RS20295 SM00448 cheY-homologous receiver domain CLD04_RS20330 SM00882 Coenzyme A transferase CLD04_RS20335 SM00882 Coenzyme A transferase CLD04_RS20355 SM00155 Phospholipase D. Active site motifs. CLD04_RS20475 SM01060 CLD04_RS20475 CLD04_RS20510 SM00487 DEAD-like helicases superfamily CLD04_RS20510 SM00490 helicase superfamily c-terminal domain CLD04_RS20655 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CLD04_RS20665 SM01133 CLD04_RS20665 CLD04_RS20695 SM00382 ATPases associated with a variety of cellular activities CLD04_RS20705 SM00062 Bacterial periplasmic substrate-binding proteins CLD04_RS20770 SM00382 ATPases associated with a variety of cellular activities CLD04_RS20775 SM00387 Histidine kinase-like ATPases CLD04_RS20780 SM00448 cheY-homologous receiver domain CLD04_RS20780 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS20835 SM00420 helix_turn_helix, Deoxyribose operon repressor CLD04_RS20835 SM01134 CLD04_RS20835 CLD04_RS20860 SM00387 Histidine kinase-like ATPases CLD04_RS20890 SM00564 beta-propeller repeat CLD04_RS20925 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS20955 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS20955 SM00895 CLD04_RS20955 CLD04_RS20970 SM01350 CLD04_RS20970 CLD04_RS21000 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLD04_RS21000 SM00866 CLD04_RS21000 CLD04_RS21015 SM00382 ATPases associated with a variety of cellular activities CLD04_RS21025 SM00507 HNH nucleases CLD04_RS21105 SM00382 ATPases associated with a variety of cellular activities CLD04_RS21110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS21110 SM00387 Histidine kinase-like ATPases CLD04_RS21110 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS21115 SM00448 cheY-homologous receiver domain CLD04_RS21115 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS21130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLD04_RS21135 SM00849 Metallo-beta-lactamase superfamily CLD04_RS21150 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLD04_RS21150 SM00091 PAS domain CLD04_RS21150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLD04_RS21150 SM00387 Histidine kinase-like ATPases CLD04_RS21150 SM00388 His Kinase A (phosphoacceptor) domain CLD04_RS21155 SM00448 cheY-homologous receiver domain CLD04_RS21155 SM00862 Transcriptional regulatory protein, C terminal CLD04_RS21180 SM00788 Adenylosuccinate synthetase CLD04_RS21190 SM00382 ATPases associated with a variety of cellular activities CLD04_RS21225 SM00267 diguanylate cyclase CLD04_RS21250 SM01131 CLD04_RS21250 CLD04_RS21315 SM00849 Metallo-beta-lactamase superfamily CLD04_RS21320 SM00347 helix_turn_helix multiple antibiotic resistance protein CLD04_RS21355 SM00226 Low molecular weight phosphatase family CLD04_RS21370 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLD04_RS21405 SM01266 CLD04_RS21405 CLD04_RS21415 SM00354 helix_turn _helix lactose operon repressor CLD04_RS21445 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CLD04_RS21465 SM00470 ParB-like nuclease domain CLD04_RS21480 SM00470 ParB-like nuclease domain CLD04_RS21490 SM01228 CLD04_RS21490 CLD04_RS21500 SM00322 K homology RNA-binding domain CLD04_RS21500 SM00393 Putative single-stranded nucleic acids-binding domain CLD04_RS21500 SM01245 CLD04_RS21500