CD007_RS00005 SM00382 ATPases associated with a variety of cellular activities CD007_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CD007_RS00010 SM00480 DNA polymerase III beta subunit CD007_RS00030 SM00387 Histidine kinase-like ATPases CD007_RS00030 SM00433 TopoisomeraseII CD007_RS00035 SM00434 DNA Topoisomerase IV CD007_RS00070 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_RS00070 SM01240 CD007_RS00070 CD007_RS00075 SM00936 Penicillin-binding protein 5, C-terminal domain CD007_RS00110 SM00257 Lysin motif CD007_RS00110 SM00636 CD007_RS00110 CD007_RS00130 SM00382 ATPases associated with a variety of cellular activities CD007_RS00140 SM00493 CD007_RS00140 CD007_RS00235 SM00465 GIY-YIG type nucleases (URI domain) CD007_RS00245 SM00966 SpoVT / AbrB like domain CD007_RS00260 SM01208 CD007_RS00260 CD007_RS00265 SM00493 CD007_RS00265 CD007_RS00270 SM00650 Ribosomal RNA adenine dimethylases CD007_RS00315 SM01400 CD007_RS00315 CD007_RS00335 SM00487 DEAD-like helicases superfamily CD007_RS00335 SM00490 helicase superfamily c-terminal domain CD007_RS00335 SM00982 CD007_RS00335 CD007_RS00335 SM01058 CarD-like/TRCF domain CD007_RS00340 SM00966 SpoVT / AbrB like domain CD007_RS00355 SM00363 S4 RNA-binding domain CD007_RS00375 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_RS00390 SM00331 Sigma factor PP2C-like phosphatases CD007_RS00390 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CD007_RS00400 SM00220 Serine/Threonine protein kinases, catalytic domain CD007_RS00405 SM00977 TilS substrate C-terminal domain CD007_RS00415 SM00382 ATPases associated with a variety of cellular activities CD007_RS00460 SM00905 Dihydroneopterin aldolase CD007_RS00470 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS00560 SM00382 ATPases associated with a variety of cellular activities CD007_RS00560 SM01086 C-terminal, D2-small domain, of ClpB protein CD007_RS00565 SM00382 ATPases associated with a variety of cellular activities CD007_RS00575 SM00670 Large family of predicted nucleotide-binding domains CD007_RS00605 SM00840 CD007_RS00605 CD007_RS00610 SM00535 Ribonuclease III family CD007_RS00615 SM00967 RNA 2'-O ribose methyltransferase substrate binding CD007_RS00640 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CD007_RS00640 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CD007_RS00645 SM00649 Ribosomal protein L11/L12 CD007_RS00675 SM00663 RNA polymerase I subunit A N-terminus CD007_RS00695 SM00838 Elongation factor G C-terminus CD007_RS00695 SM00889 Elongation factor G, domain IV CD007_RS00710 SM01403 CD007_RS00710 CD007_RS00730 SM01382 CD007_RS00730 CD007_RS00730 SM01383 CD007_RS00730 CD007_RS00745 SM00322 K homology RNA-binding domain CD007_RS00765 SM01374 CD007_RS00765 CD007_RS00770 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CD007_RS00835 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_RS00855 SM00662 RNA polymerases D CD007_RS00865 SM00382 ATPases associated with a variety of cellular activities CD007_RS00870 SM00382 ATPases associated with a variety of cellular activities CD007_RS00905 SM00646 CD007_RS00905 CD007_RS00920 SM01251 CD007_RS00920 CD007_RS01065 SM00342 helix_turn_helix, arabinose operon control protein CD007_RS01165 SM00478 endonuclease III CD007_RS01170 SM00342 helix_turn_helix, arabinose operon control protein CD007_RS01205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_RS01295 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS01320 SM00342 helix_turn_helix, arabinose operon control protein CD007_RS01380 SM00450 Rhodanese Homology Domain CD007_RS01400 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS01400 SM00866 CD007_RS01400 CD007_RS01440 SM00387 Histidine kinase-like ATPases CD007_RS01445 SM00448 cheY-homologous receiver domain CD007_RS01450 SM01130 CD007_RS01450 CD007_RS01465 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CD007_RS01470 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS01470 SM00895 CD007_RS01470 CD007_RS01475 SM00858 CD007_RS01475 CD007_RS01495 SM00448 cheY-homologous receiver domain CD007_RS01495 SM00862 Transcriptional regulatory protein, C terminal CD007_RS01500 SM00387 Histidine kinase-like ATPases CD007_RS01500 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS01505 SM00382 ATPases associated with a variety of cellular activities CD007_RS01525 SM00327 von Willebrand factor (vWF) type A domain CD007_RS01570 SM00870 CD007_RS01570 CD007_RS01590 SM00387 Histidine kinase-like ATPases CD007_RS01595 SM00448 cheY-homologous receiver domain CD007_RS01595 SM00850 LytTr DNA-binding domain CD007_RS01600 SM00382 ATPases associated with a variety of cellular activities CD007_RS01640 SM00028 Tetratricopeptide repeats CD007_RS01650 SM00642 Alpha-amylase domain CD007_RS01660 SM00382 ATPases associated with a variety of cellular activities CD007_RS01720 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_RS01725 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_RS01725 SM00382 ATPases associated with a variety of cellular activities CD007_RS01755 SM00632 CD007_RS01755 CD007_RS01755 SM00642 Alpha-amylase domain CD007_RS01775 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS01890 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_RS01920 SM00833 Cobalamin synthesis protein cobW C-terminal domain CD007_RS01930 SM00062 Bacterial periplasmic substrate-binding proteins CD007_RS01965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_RS01965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS01975 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CD007_RS01985 SM00823 Phosphopantetheine attachment site CD007_RS01985 SM01294 CD007_RS01985 CD007_RS01990 SM00823 Phosphopantetheine attachment site CD007_RS01990 SM01294 CD007_RS01990 CD007_RS01995 SM00823 Phosphopantetheine attachment site CD007_RS02020 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS02035 SM00382 ATPases associated with a variety of cellular activities CD007_RS02045 SM00062 Bacterial periplasmic substrate-binding proteins CD007_RS02085 SM00710 Parallel beta-helix repeats CD007_RS02085 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CD007_RS02110 SM00382 ATPases associated with a variety of cellular activities CD007_RS02120 SM00448 cheY-homologous receiver domain CD007_RS02120 SM00862 Transcriptional regulatory protein, C terminal CD007_RS02125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS02125 SM00387 Histidine kinase-like ATPases CD007_RS02125 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS02130 SM00028 Tetratricopeptide repeats CD007_RS02165 SM00382 ATPases associated with a variety of cellular activities CD007_RS02195 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_RS02200 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS02235 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_RS02260 SM01329 CD007_RS02260 CD007_RS02305 SM00796 Allophanate hydrolase subunit 1 CD007_RS02310 SM00797 Allophanate hydrolase subunit 2 CD007_RS02315 SM00346 helix_turn_helix isocitrate lyase regulation CD007_RS02390 SM00344 helix_turn_helix ASNC type CD007_RS02395 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CD007_RS02395 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CD007_RS02395 SM00493 CD007_RS02395 CD007_RS02405 SM00267 diguanylate cyclase CD007_RS02490 SM00091 PAS domain CD007_RS02490 SM00387 Histidine kinase-like ATPases CD007_RS02495 SM00448 cheY-homologous receiver domain CD007_RS02510 SM00382 ATPases associated with a variety of cellular activities CD007_RS02565 SM00487 DEAD-like helicases superfamily CD007_RS02565 SM00490 helicase superfamily c-terminal domain CD007_RS02595 SM01005 Alanine racemase, C-terminal domain CD007_RS02620 SM00387 Histidine kinase-like ATPases CD007_RS02625 SM00331 Sigma factor PP2C-like phosphatases CD007_RS02645 SM00331 Sigma factor PP2C-like phosphatases CD007_RS02645 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CD007_RS02650 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_RS02650 SM00732 Likely ribonuclease with RNase H fold. CD007_RS02660 SM00731 SprT homologues. CD007_RS02710 SM00487 DEAD-like helicases superfamily CD007_RS02710 SM00491 CD007_RS02710 CD007_RS02735 SM00860 SMI1 / KNR4 family CD007_RS02755 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS02770 SM00357 Cold shock protein domain CD007_RS02775 SM01058 CarD-like/TRCF domain CD007_RS02790 SM00342 helix_turn_helix, arabinose operon control protein CD007_RS02800 SM00342 helix_turn_helix, arabinose operon control protein CD007_RS02800 SM00871 Bacterial transcription activator, effector binding domain CD007_RS02805 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS02850 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS02895 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_RS02920 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS02930 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_RS02950 SM00387 Histidine kinase-like ATPases CD007_RS02955 SM00421 helix_turn_helix, Lux Regulon CD007_RS02955 SM00448 cheY-homologous receiver domain CD007_RS02975 SM00422 helix_turn_helix, mercury resistance CD007_RS02975 SM00871 Bacterial transcription activator, effector binding domain CD007_RS03060 SM00382 ATPases associated with a variety of cellular activities CD007_RS03075 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS03090 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS03090 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_RS03105 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS03105 SM00895 CD007_RS03105 CD007_RS03110 SM00257 Lysin motif CD007_RS03110 SM00636 CD007_RS03110 CD007_RS03125 SM00098 Alkaline phosphatase homologues CD007_RS03145 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_RS03180 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS03180 SM00866 CD007_RS03180 CD007_RS03265 SM00382 ATPases associated with a variety of cellular activities CD007_RS03275 SM00881 CoA binding domain CD007_RS03305 SM00883 Chaperonin 10 Kd subunit CD007_RS03330 SM00829 Enoylreductase CD007_RS03375 SM00829 Enoylreductase CD007_RS03440 SM00460 Transglutaminase/protease-like homologues CD007_RS03485 SM01001 AIR carboxylase CD007_RS03495 SM00998 Adenylosuccinate lyase C-terminus CD007_RS03510 SM01211 CD007_RS03510 CD007_RS03535 SM00798 AICARFT/IMPCHase bienzyme CD007_RS03535 SM00851 MGS-like domain CD007_RS03540 SM01209 CD007_RS03540 CD007_RS03540 SM01210 CD007_RS03540 CD007_RS03545 SM00344 helix_turn_helix ASNC type CD007_RS03590 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CD007_RS03590 SM00292 breast cancer carboxy-terminal domain CD007_RS03590 SM00532 Ligase N family CD007_RS03625 SM00845 GatB domain CD007_RS03640 SM00046 Diacylglycerol kinase catalytic domain (presumed) CD007_RS03670 SM00028 Tetratricopeptide repeats CD007_RS03735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS03735 SM00387 Histidine kinase-like ATPases CD007_RS03740 SM00342 helix_turn_helix, arabinose operon control protein CD007_RS03740 SM00448 cheY-homologous receiver domain CD007_RS03765 SM00342 helix_turn_helix, arabinose operon control protein CD007_RS03870 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS03945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_RS03950 SM00382 ATPases associated with a variety of cellular activities CD007_RS03960 SM00422 helix_turn_helix, mercury resistance CD007_RS03985 SM00382 ATPases associated with a variety of cellular activities CD007_RS03990 SM00487 DEAD-like helicases superfamily CD007_RS03990 SM00490 helicase superfamily c-terminal domain CD007_RS04000 SM00829 Enoylreductase CD007_RS04005 SM00382 ATPases associated with a variety of cellular activities CD007_RS04040 SM00656 CD007_RS04040 CD007_RS04050 SM00387 Histidine kinase-like ATPases CD007_RS04055 SM00448 cheY-homologous receiver domain CD007_RS04070 SM00849 Metallo-beta-lactamase superfamily CD007_RS04160 SM00642 Alpha-amylase domain CD007_RS04165 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS04165 SM00866 CD007_RS04165 CD007_RS04195 SM00226 Low molecular weight phosphatase family CD007_RS04255 SM00478 endonuclease III CD007_RS04285 SM00861 Transketolase, pyrimidine binding domain CD007_RS04300 SM00382 ATPases associated with a variety of cellular activities CD007_RS04360 SM00382 ATPases associated with a variety of cellular activities CD007_RS04365 SM00382 ATPases associated with a variety of cellular activities CD007_RS04380 SM00387 Histidine kinase-like ATPases CD007_RS04385 SM00421 helix_turn_helix, Lux Regulon CD007_RS04385 SM00448 cheY-homologous receiver domain CD007_RS04395 SM00382 ATPases associated with a variety of cellular activities CD007_RS04435 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS04510 SM00287 Bacterial SH3 domain homologues CD007_RS04540 SM00478 endonuclease III CD007_RS04540 SM00525 CD007_RS04540 CD007_RS04570 SM00382 ATPases associated with a variety of cellular activities CD007_RS04735 SM01060 CD007_RS04735 CD007_RS04740 SM00382 ATPases associated with a variety of cellular activities CD007_RS04745 SM00062 Bacterial periplasmic substrate-binding proteins CD007_RS04775 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS04790 SM00567 E-Z type HEAT repeats CD007_RS04820 SM00763 PrkA AAA domain CD007_RS04830 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS04865 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS04870 SM00382 ATPases associated with a variety of cellular activities CD007_RS04875 SM00382 ATPases associated with a variety of cellular activities CD007_RS04885 SM00357 Cold shock protein domain CD007_RS04900 SM00267 diguanylate cyclase CD007_RS04930 SM00318 Staphylococcal nuclease homologues CD007_RS04940 SM00363 S4 RNA-binding domain CD007_RS04950 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_RS04995 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CD007_RS04995 SM00387 Histidine kinase-like ATPases CD007_RS05000 SM00421 helix_turn_helix, Lux Regulon CD007_RS05000 SM00448 cheY-homologous receiver domain CD007_RS05020 SM00257 Lysin motif CD007_RS05040 SM00098 Alkaline phosphatase homologues CD007_RS05045 SM00257 Lysin motif CD007_RS05075 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS05105 SM00563 Phosphate acyltransferases CD007_RS05110 SM01091 Transporter associated domain CD007_RS05115 SM00422 helix_turn_helix, mercury resistance CD007_RS05125 SM01091 Transporter associated domain CD007_RS05185 SM00382 ATPases associated with a variety of cellular activities CD007_RS05190 SM00382 ATPases associated with a variety of cellular activities CD007_RS05245 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_RS05275 SM00382 ATPases associated with a variety of cellular activities CD007_RS05295 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_RS05335 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS05365 SM00382 ATPases associated with a variety of cellular activities CD007_RS05450 SM01022 CD007_RS05450 CD007_RS05465 SM00849 Metallo-beta-lactamase superfamily CD007_RS05505 SM00829 Enoylreductase CD007_RS05515 SM00855 Phosphoglycerate mutase family CD007_RS05535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_RS05550 SM00914 CD007_RS05550 CD007_RS05565 SM00894 Excalibur calcium-binding domain CD007_RS05600 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS05635 SM00354 helix_turn _helix lactose operon repressor CD007_RS05770 SM00342 helix_turn_helix, arabinose operon control protein CD007_RS05775 SM00354 helix_turn _helix lactose operon repressor CD007_RS05795 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS05840 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CD007_RS05870 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_RS05880 SM00752 Horizontally Transferred TransMembrane Domain CD007_RS05960 SM00859 Semialdehyde dehydrogenase, NAD binding domain CD007_RS05980 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CD007_RS05985 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CD007_RS06035 SM00825 Beta-ketoacyl synthase CD007_RS06045 SM00382 ATPases associated with a variety of cellular activities CD007_RS06050 SM00382 ATPases associated with a variety of cellular activities CD007_RS06095 SM00382 ATPases associated with a variety of cellular activities CD007_RS06100 SM00382 ATPases associated with a variety of cellular activities CD007_RS06165 SM01118 CD007_RS06165 CD007_RS06175 SM00954 Region found in RelA / SpoT proteins CD007_RS06385 SM00028 Tetratricopeptide repeats CD007_RS06400 SM00635 Bacterial Ig-like domain 2 CD007_RS06495 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_RS06495 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CD007_RS06555 SM00382 ATPases associated with a variety of cellular activities CD007_RS06565 SM00835 Cupin CD007_RS06595 SM00829 Enoylreductase CD007_RS06615 SM00354 helix_turn _helix lactose operon repressor CD007_RS06625 SM00858 CD007_RS06625 CD007_RS06640 SM00382 ATPases associated with a variety of cellular activities CD007_RS06645 SM00028 Tetratricopeptide repeats CD007_RS06660 SM00257 Lysin motif CD007_RS06660 SM00644 CD007_RS06660 CD007_RS06685 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS06700 SM00382 ATPases associated with a variety of cellular activities CD007_RS06800 SM00257 Lysin motif CD007_RS06865 SM00257 Lysin motif CD007_RS06865 SM00644 CD007_RS06865 CD007_RS06910 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_RS06935 SM00382 ATPases associated with a variety of cellular activities CD007_RS06950 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CD007_RS06960 SM00382 ATPases associated with a variety of cellular activities CD007_RS07020 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CD007_RS07035 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS07075 SM00382 ATPases associated with a variety of cellular activities CD007_RS07090 SM00448 cheY-homologous receiver domain CD007_RS07090 SM00862 Transcriptional regulatory protein, C terminal CD007_RS07095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS07095 SM00387 Histidine kinase-like ATPases CD007_RS07095 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS07120 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_RS07120 SM00924 MgtE intracellular N domain CD007_RS07125 SM00422 helix_turn_helix, mercury resistance CD007_RS07140 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS07175 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CD007_RS07180 SM00052 Putative diguanylate phosphodiesterase CD007_RS07180 SM00267 diguanylate cyclase CD007_RS07240 SM00091 PAS domain CD007_RS07240 SM00387 Histidine kinase-like ATPases CD007_RS07240 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS07280 SM01007 Class II Aldolase and Adducin N-terminal domain CD007_RS07305 SM00387 Histidine kinase-like ATPases CD007_RS07305 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS07310 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS07330 SM00382 ATPases associated with a variety of cellular activities CD007_RS07330 SM01086 C-terminal, D2-small domain, of ClpB protein CD007_RS07365 SM00822 CD007_RS07365 CD007_RS07370 SM00257 Lysin motif CD007_RS07375 SM00257 Lysin motif CD007_RS07380 SM00636 CD007_RS07380 CD007_RS07435 SM00354 helix_turn _helix lactose operon repressor CD007_RS07440 SM01061 CAT RNA binding domain CD007_RS07475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_RS07475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS07495 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CD007_RS07495 SM00091 PAS domain CD007_RS07495 SM00387 Histidine kinase-like ATPases CD007_RS07495 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS07510 SM00260 Two component signalling adaptor domain CD007_RS07510 SM00448 cheY-homologous receiver domain CD007_RS07525 SM00257 Lysin motif CD007_RS07540 SM00052 Putative diguanylate phosphodiesterase CD007_RS07635 SM00852 Probable molybdopterin binding domain CD007_RS07655 SM00382 ATPases associated with a variety of cellular activities CD007_RS07660 SM00382 ATPases associated with a variety of cellular activities CD007_RS07675 SM00382 ATPases associated with a variety of cellular activities CD007_RS07680 SM01066 Carbohydrate binding domain CD007_RS07685 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_RS07685 SM01134 CD007_RS07685 CD007_RS07710 SM00382 ATPases associated with a variety of cellular activities CD007_RS07735 SM00966 SpoVT / AbrB like domain CD007_RS07740 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CD007_RS07740 SM00091 PAS domain CD007_RS07740 SM00387 Histidine kinase-like ATPases CD007_RS07740 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS07760 SM00849 Metallo-beta-lactamase superfamily CD007_RS07795 SM00861 Transketolase, pyrimidine binding domain CD007_RS07895 SM00838 Elongation factor G C-terminus CD007_RS07915 SM00670 Large family of predicted nucleotide-binding domains CD007_RS07940 SM00878 Biotin carboxylase C-terminal domain CD007_RS07985 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_RS08035 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_RS08095 SM00740 CD007_RS08095 CD007_RS08100 SM00740 CD007_RS08100 CD007_RS08155 SM00842 Cell division protein FtsA CD007_RS08160 SM00864 Tubulin/FtsZ family, GTPase domain CD007_RS08160 SM00865 Tubulin/FtsZ family, C-terminal domain CD007_RS08185 SM00382 ATPases associated with a variety of cellular activities CD007_RS08220 SM00363 S4 RNA-binding domain CD007_RS08245 SM00363 S4 RNA-binding domain CD007_RS08270 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CD007_RS08275 SM00851 MGS-like domain CD007_RS08275 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CD007_RS08275 SM01209 CD007_RS08275 CD007_RS08290 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CD007_RS08340 SM00831 Cation transporter/ATPase, N-terminus CD007_RS08355 SM00072 Guanylate kinase homologues. CD007_RS08360 SM01409 CD007_RS08360 CD007_RS08370 SM00487 DEAD-like helicases superfamily CD007_RS08370 SM00490 helicase superfamily c-terminal domain CD007_RS08395 SM00331 Sigma factor PP2C-like phosphatases CD007_RS08395 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CD007_RS08400 SM00220 Serine/Threonine protein kinases, catalytic domain CD007_RS08400 SM00740 CD007_RS08400 CD007_RS08415 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CD007_RS08435 SM01120 CD007_RS08435 CD007_RS08435 SM01121 CD007_RS08435 CD007_RS08450 SM00487 DEAD-like helicases superfamily CD007_RS08450 SM00490 helicase superfamily c-terminal domain CD007_RS08465 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CD007_RS08470 SM00822 CD007_RS08470 CD007_RS08480 SM00358 Double-stranded RNA binding motif CD007_RS08480 SM00535 Ribonuclease III family CD007_RS08485 SM00968 SMC proteins Flexible Hinge Domain CD007_RS08490 SM00382 ATPases associated with a variety of cellular activities CD007_RS08490 SM00962 SRP54-type protein, GTPase domain CD007_RS08490 SM00963 SRP54-type protein, helical bundle domain CD007_RS08505 SM00382 ATPases associated with a variety of cellular activities CD007_RS08505 SM00962 SRP54-type protein, GTPase domain CD007_RS08505 SM00963 SRP54-type protein, helical bundle domain CD007_RS08565 SM00881 CoA binding domain CD007_RS08575 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CD007_RS08575 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CD007_RS08575 SM00493 CD007_RS08575 CD007_RS08595 SM00382 ATPases associated with a variety of cellular activities CD007_RS08595 SM01086 C-terminal, D2-small domain, of ClpB protein CD007_RS08635 SM00382 ATPases associated with a variety of cellular activities CD007_RS08685 SM00448 cheY-homologous receiver domain CD007_RS08720 SM00962 SRP54-type protein, GTPase domain CD007_RS08730 SM00448 cheY-homologous receiver domain CD007_RS08735 SM00073 Histidine Phosphotransfer domain CD007_RS08735 SM00260 Two component signalling adaptor domain CD007_RS08735 SM00387 Histidine kinase-like ATPases CD007_RS08735 SM01231 CD007_RS08735 CD007_RS08740 SM00260 Two component signalling adaptor domain CD007_RS08810 SM00479 CD007_RS08810 CD007_RS08810 SM00481 DNA polymerase alpha chain like domain CD007_RS08825 SM00382 ATPases associated with a variety of cellular activities CD007_RS08830 SM01260 CD007_RS08830 CD007_RS08840 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_RS08840 SM00322 K homology RNA-binding domain CD007_RS08875 SM00904 Riboflavin kinase CD007_RS08880 SM01387 CD007_RS08880 CD007_RS08885 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_RS08885 SM00322 K homology RNA-binding domain CD007_RS08915 SM00859 Semialdehyde dehydrogenase, NAD binding domain CD007_RS08925 SM01130 CD007_RS08925 CD007_RS08930 SM00849 Metallo-beta-lactamase superfamily CD007_RS08945 SM00382 ATPases associated with a variety of cellular activities CD007_RS08945 SM00843 CD007_RS08945 CD007_RS08950 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS08950 SM00866 CD007_RS08950 CD007_RS08985 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS08995 SM00852 Probable molybdopterin binding domain CD007_RS09000 SM00382 ATPases associated with a variety of cellular activities CD007_RS09010 SM00322 K homology RNA-binding domain CD007_RS09010 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_RS09025 SM00829 Enoylreductase CD007_RS09035 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_RS09050 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CD007_RS09050 SM00534 ATPase domain of DNA mismatch repair MUTS family CD007_RS09055 SM00853 MutL C terminal dimerisation domain CD007_RS09055 SM01340 CD007_RS09055 CD007_RS09075 SM00849 Metallo-beta-lactamase superfamily CD007_RS09085 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CD007_RS09090 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CD007_RS09095 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CD007_RS09105 SM00825 Beta-ketoacyl synthase CD007_RS09125 SM00822 CD007_RS09125 CD007_RS09125 SM00823 Phosphopantetheine attachment site CD007_RS09125 SM00825 Beta-ketoacyl synthase CD007_RS09125 SM00826 CD007_RS09125 CD007_RS09125 SM01294 CD007_RS09125 CD007_RS09130 SM00822 CD007_RS09130 CD007_RS09130 SM00823 Phosphopantetheine attachment site CD007_RS09130 SM00825 Beta-ketoacyl synthase CD007_RS09130 SM00826 CD007_RS09130 CD007_RS09130 SM01294 CD007_RS09130 CD007_RS09135 SM00822 CD007_RS09135 CD007_RS09135 SM00823 Phosphopantetheine attachment site CD007_RS09135 SM00825 Beta-ketoacyl synthase CD007_RS09135 SM00826 CD007_RS09135 CD007_RS09135 SM01294 CD007_RS09135 CD007_RS09140 SM00822 CD007_RS09140 CD007_RS09140 SM00823 Phosphopantetheine attachment site CD007_RS09140 SM00825 Beta-ketoacyl synthase CD007_RS09140 SM00826 CD007_RS09140 CD007_RS09140 SM01294 CD007_RS09140 CD007_RS09145 SM00823 Phosphopantetheine attachment site CD007_RS09145 SM00825 Beta-ketoacyl synthase CD007_RS09145 SM01294 CD007_RS09145 CD007_RS09160 SM00849 Metallo-beta-lactamase superfamily CD007_RS09245 SM00646 CD007_RS09245 CD007_RS09255 SM00382 ATPases associated with a variety of cellular activities CD007_RS09270 SM00422 helix_turn_helix, mercury resistance CD007_RS09275 SM01230 CD007_RS09275 CD007_RS09300 SM00860 SMI1 / KNR4 family CD007_RS09385 SM01005 Alanine racemase, C-terminal domain CD007_RS09515 SM00257 Lysin motif CD007_RS09520 SM00857 Resolvase, N terminal domain CD007_RS09530 SM00861 Transketolase, pyrimidine binding domain CD007_RS09555 SM00448 cheY-homologous receiver domain CD007_RS09625 SM01207 CD007_RS09625 CD007_RS09630 SM00881 CoA binding domain CD007_RS09635 SM00387 Histidine kinase-like ATPases CD007_RS09635 SM00433 TopoisomeraseII CD007_RS09640 SM00434 DNA Topoisomerase IV CD007_RS09655 SM01067 Cellulose binding domain CD007_RS09670 SM00606 Cellulose Binding Domain Type IV CD007_RS09715 SM00878 Biotin carboxylase C-terminal domain CD007_RS09745 SM00823 Phosphopantetheine attachment site CD007_RS09745 SM00824 Thioesterase CD007_RS09750 SM00823 Phosphopantetheine attachment site CD007_RS09755 SM00823 Phosphopantetheine attachment site CD007_RS09760 SM00823 Phosphopantetheine attachment site CD007_RS09765 SM00823 Phosphopantetheine attachment site CD007_RS09835 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CD007_RS09850 SM00822 CD007_RS09850 CD007_RS09880 SM00382 ATPases associated with a variety of cellular activities CD007_RS09885 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS09905 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_RS09930 SM00354 helix_turn _helix lactose operon repressor CD007_RS09950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_RS09950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS09970 SM00656 CD007_RS09970 CD007_RS09985 SM00835 Cupin CD007_RS10160 SM00028 Tetratricopeptide repeats CD007_RS10180 SM00860 SMI1 / KNR4 family CD007_RS10195 SM00342 helix_turn_helix, arabinose operon control protein CD007_RS10210 SM00849 Metallo-beta-lactamase superfamily CD007_RS10215 SM00871 Bacterial transcription activator, effector binding domain CD007_RS10230 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_RS10270 SM00421 helix_turn_helix, Lux Regulon CD007_RS10270 SM00448 cheY-homologous receiver domain CD007_RS10275 SM00257 Lysin motif CD007_RS10280 SM00341 Helicase and RNase D C-terminal CD007_RS10280 SM00487 DEAD-like helicases superfamily CD007_RS10280 SM00490 helicase superfamily c-terminal domain CD007_RS10280 SM00956 CD007_RS10280 CD007_RS10370 SM00861 Transketolase, pyrimidine binding domain CD007_RS10375 SM00327 von Willebrand factor (vWF) type A domain CD007_RS10380 SM00382 ATPases associated with a variety of cellular activities CD007_RS10390 SM00257 Lysin motif CD007_RS10485 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_RS10485 SM00245 tail specific protease CD007_RS10520 SM00014 Acid phosphatase homologues CD007_RS10565 SM00882 Coenzyme A transferase CD007_RS10570 SM00882 Coenzyme A transferase CD007_RS10630 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS10670 SM00382 ATPases associated with a variety of cellular activities CD007_RS10715 SM00567 E-Z type HEAT repeats CD007_RS10715 SM00932 Scaffold protein Nfu/NifU N terminal CD007_RS10720 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_RS10740 SM00357 Cold shock protein domain CD007_RS10780 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CD007_RS10780 SM00475 5'-3' exonuclease CD007_RS10840 SM00354 helix_turn _helix lactose operon repressor CD007_RS10855 SM00491 CD007_RS10855 CD007_RS10870 SM00981 CD007_RS10870 CD007_RS10900 SM00487 DEAD-like helicases superfamily CD007_RS10900 SM00490 helicase superfamily c-terminal domain CD007_RS10960 SM00478 endonuclease III CD007_RS10960 SM00525 CD007_RS10960 CD007_RS10990 SM00479 CD007_RS10990 CD007_RS10990 SM00487 DEAD-like helicases superfamily CD007_RS10990 SM00491 CD007_RS10990 CD007_RS11030 SM00851 MGS-like domain CD007_RS11080 SM00914 CD007_RS11080 CD007_RS11085 SM00028 Tetratricopeptide repeats CD007_RS11150 SM00138 Methyltransferase, chemotaxis proteins CD007_RS11155 SM00562 CD007_RS11155 CD007_RS11185 SM00411 bacterial (prokaryotic) histone like domain CD007_RS11235 SM01240 CD007_RS11235 CD007_RS11240 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_RS11280 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CD007_RS11300 SM00257 Lysin motif CD007_RS11310 SM00487 DEAD-like helicases superfamily CD007_RS11310 SM00490 helicase superfamily c-terminal domain CD007_RS11350 SM00091 PAS domain CD007_RS11350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS11350 SM00387 Histidine kinase-like ATPases CD007_RS11350 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS11355 SM00448 cheY-homologous receiver domain CD007_RS11355 SM00862 Transcriptional regulatory protein, C terminal CD007_RS11375 SM00363 S4 RNA-binding domain CD007_RS11390 SM00936 Penicillin-binding protein 5, C-terminal domain CD007_RS11525 SM00387 Histidine kinase-like ATPases CD007_RS11535 SM00936 Penicillin-binding protein 5, C-terminal domain CD007_RS11575 SM00919 Malic enzyme, NAD binding domain CD007_RS11575 SM01274 CD007_RS11575 CD007_RS11590 SM00870 CD007_RS11590 CD007_RS11595 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS11700 SM00849 Metallo-beta-lactamase superfamily CD007_RS11730 SM00849 Metallo-beta-lactamase superfamily CD007_RS11740 SM01350 CD007_RS11740 CD007_RS11790 SM00382 ATPases associated with a variety of cellular activities CD007_RS11800 SM00062 Bacterial periplasmic substrate-binding proteins CD007_RS11800 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CD007_RS11810 SM00046 Diacylglycerol kinase catalytic domain (presumed) CD007_RS11820 SM00422 helix_turn_helix, mercury resistance CD007_RS11830 SM00861 Transketolase, pyrimidine binding domain CD007_RS11850 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CD007_RS11860 SM00091 PAS domain CD007_RS11860 SM00382 ATPases associated with a variety of cellular activities CD007_RS11905 SM00646 CD007_RS11905 CD007_RS11920 SM00448 cheY-homologous receiver domain CD007_RS11925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_RS11940 SM00363 S4 RNA-binding domain CD007_RS11945 SM00861 Transketolase, pyrimidine binding domain CD007_RS11980 SM00878 Biotin carboxylase C-terminal domain CD007_RS12025 SM00382 ATPases associated with a variety of cellular activities CD007_RS12035 SM00841 Elongation factor P, C-terminal CD007_RS12035 SM01185 CD007_RS12035 CD007_RS12070 SM00529 Helix-turn-helix diphteria tox regulatory element CD007_RS12080 SM00450 Rhodanese Homology Domain CD007_RS12100 SM00487 DEAD-like helicases superfamily CD007_RS12100 SM00490 helicase superfamily c-terminal domain CD007_RS12115 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS12175 SM00382 ATPases associated with a variety of cellular activities CD007_RS12190 SM01091 Transporter associated domain CD007_RS12215 SM00849 Metallo-beta-lactamase superfamily CD007_RS12235 SM00631 CD007_RS12235 CD007_RS12255 SM00028 Tetratricopeptide repeats CD007_RS12295 SM00382 ATPases associated with a variety of cellular activities CD007_RS12300 SM00382 ATPases associated with a variety of cellular activities CD007_RS12345 SM00257 Lysin motif CD007_RS12380 SM00518 AP endonuclease family 2 CD007_RS12385 SM00487 DEAD-like helicases superfamily CD007_RS12385 SM00490 helicase superfamily c-terminal domain CD007_RS12425 SM00400 zinc finger CD007_RS12425 SM00493 CD007_RS12425 CD007_RS12440 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_RS12485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_RS12535 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_RS12550 SM00271 DnaJ molecular chaperone homology domain CD007_RS12570 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_RS12575 SM00838 Elongation factor G C-terminus CD007_RS12610 SM00849 Metallo-beta-lactamase superfamily CD007_RS12620 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CD007_RS12640 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_RS12650 SM01103 CD007_RS12650 CD007_RS12680 SM00644 CD007_RS12680 CD007_RS12690 SM01350 CD007_RS12690 CD007_RS12710 SM00857 Resolvase, N terminal domain CD007_RS12720 SM00226 Low molecular weight phosphatase family CD007_RS12735 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_RS12745 SM00028 Tetratricopeptide repeats CD007_RS12780 SM00644 CD007_RS12780 CD007_RS12840 SM00257 Lysin motif CD007_RS12975 SM00382 ATPases associated with a variety of cellular activities CD007_RS13005 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS13015 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS13020 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS13060 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS13065 SM00448 cheY-homologous receiver domain CD007_RS13065 SM00862 Transcriptional regulatory protein, C terminal CD007_RS13110 SM00450 Rhodanese Homology Domain CD007_RS13155 SM00422 helix_turn_helix, mercury resistance CD007_RS13170 SM01091 Transporter associated domain CD007_RS13230 SM00344 helix_turn_helix ASNC type CD007_RS13295 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS13295 SM00895 CD007_RS13295 CD007_RS13305 SM00822 CD007_RS13305 CD007_RS13310 SM00861 Transketolase, pyrimidine binding domain CD007_RS13325 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS13375 SM00287 Bacterial SH3 domain homologues CD007_RS13415 SM00422 helix_turn_helix, mercury resistance CD007_RS13425 SM00829 Enoylreductase CD007_RS13435 SM00640 Glycosyl hydrolases family 32 CD007_RS13460 SM00382 ATPases associated with a variety of cellular activities CD007_RS13530 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_RS13530 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CD007_RS13560 SM00650 Ribosomal RNA adenine dimethylases CD007_RS13615 SM00732 Likely ribonuclease with RNase H fold. CD007_RS13625 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CD007_RS13635 SM00382 ATPases associated with a variety of cellular activities CD007_RS13640 SM00062 Bacterial periplasmic substrate-binding proteins CD007_RS13640 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CD007_RS13670 SM00382 ATPases associated with a variety of cellular activities CD007_RS13675 SM00028 Tetratricopeptide repeats CD007_RS13695 SM00382 ATPases associated with a variety of cellular activities CD007_RS13725 SM00287 Bacterial SH3 domain homologues CD007_RS13725 SM00646 CD007_RS13725 CD007_RS13735 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_RS13735 SM00954 Region found in RelA / SpoT proteins CD007_RS13785 SM01323 CD007_RS13785 CD007_RS13805 SM00382 ATPases associated with a variety of cellular activities CD007_RS13810 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CD007_RS13860 SM00257 Lysin motif CD007_RS13905 SM01317 CD007_RS13905 CD007_RS14000 SM00257 Lysin motif CD007_RS14010 SM01004 Delta-aminolevulinic acid dehydratase CD007_RS14045 SM00382 ATPases associated with a variety of cellular activities CD007_RS14045 SM00464 Found in ATP-dependent protease La (LON) CD007_RS14050 SM00382 ATPases associated with a variety of cellular activities CD007_RS14055 SM00382 ATPases associated with a variety of cellular activities CD007_RS14055 SM00994 ClpX C4-type zinc finger CD007_RS14055 SM01086 C-terminal, D2-small domain, of ClpB protein CD007_RS14080 SM01329 CD007_RS14080 CD007_RS14085 SM00917 LeuA allosteric (dimerisation) domain CD007_RS14145 SM00909 Sporulation and spore germination CD007_RS14155 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS14160 SM00421 helix_turn_helix, Lux Regulon CD007_RS14200 SM00465 GIY-YIG type nucleases (URI domain) CD007_RS14215 SM00813 Alpha-L-arabinofuranosidase C-terminus CD007_RS14220 SM00893 Electron transfer flavoprotein domain CD007_RS14225 SM00893 Electron transfer flavoprotein domain CD007_RS14255 SM00463 Small MutS-related domain CD007_RS14255 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CD007_RS14255 SM00534 ATPase domain of DNA mismatch repair MUTS family CD007_RS14260 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CD007_RS14260 SM00481 DNA polymerase alpha chain like domain CD007_RS14260 SM00483 DNA polymerase X family CD007_RS14280 SM00873 B3/4 domain CD007_RS14280 SM00874 tRNA synthetase B5 domain CD007_RS14280 SM00896 Ferredoxin-fold anticodon binding domain CD007_RS14295 SM00967 RNA 2'-O ribose methyltransferase substrate binding CD007_RS14335 SM00813 Alpha-L-arabinofuranosidase C-terminus CD007_RS14365 SM01007 Class II Aldolase and Adducin N-terminal domain CD007_RS14430 SM00448 cheY-homologous receiver domain CD007_RS14430 SM00850 LytTr DNA-binding domain CD007_RS14435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CD007_RS14435 SM00387 Histidine kinase-like ATPases CD007_RS14445 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CD007_RS14460 SM00382 ATPases associated with a variety of cellular activities CD007_RS14480 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CD007_RS14510 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CD007_RS14510 SM01232 CD007_RS14510 CD007_RS14515 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CD007_RS14515 SM00474 3'-5' exonuclease CD007_RS14515 SM00475 5'-3' exonuclease CD007_RS14515 SM00482 DNA polymerase A domain CD007_RS14520 SM00091 PAS domain CD007_RS14520 SM00387 Histidine kinase-like ATPases CD007_RS14520 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS14525 SM00448 cheY-homologous receiver domain CD007_RS14525 SM00862 Transcriptional regulatory protein, C terminal CD007_RS14540 SM01329 CD007_RS14540 CD007_RS14585 SM00919 Malic enzyme, NAD binding domain CD007_RS14585 SM01274 CD007_RS14585 CD007_RS14590 SM00481 DNA polymerase alpha chain like domain CD007_RS14620 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_RS14635 SM00904 Riboflavin kinase CD007_RS14655 SM00382 ATPases associated with a variety of cellular activities CD007_RS14670 SM00062 Bacterial periplasmic substrate-binding proteins CD007_RS14675 SM00062 Bacterial periplasmic substrate-binding proteins CD007_RS14690 SM00849 Metallo-beta-lactamase superfamily CD007_RS14715 SM00852 Probable molybdopterin binding domain CD007_RS14780 SM00981 CD007_RS14780 CD007_RS14810 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CD007_RS14815 SM00267 diguanylate cyclase CD007_RS14825 SM00363 S4 RNA-binding domain CD007_RS14825 SM01390 CD007_RS14825 CD007_RS14830 SM00363 S4 RNA-binding domain CD007_RS14850 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_RS14870 SM00354 helix_turn _helix lactose operon repressor CD007_RS14875 SM00830 Chorismate mutase type II CD007_RS14900 SM00382 ATPases associated with a variety of cellular activities CD007_RS14900 SM00843 CD007_RS14900 CD007_RS14935 SM00919 Malic enzyme, NAD binding domain CD007_RS14935 SM01274 CD007_RS14935 CD007_RS14940 SM00849 Metallo-beta-lactamase superfamily CD007_RS14960 SM00642 Alpha-amylase domain CD007_RS14965 SM00046 Diacylglycerol kinase catalytic domain (presumed) CD007_RS15000 SM00382 ATPases associated with a variety of cellular activities CD007_RS15005 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_RS15010 SM00363 S4 RNA-binding domain CD007_RS15060 SM00342 helix_turn_helix, arabinose operon control protein CD007_RS15085 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_RS15085 SM00876 Biotin and Thiamin Synthesis associated domain CD007_RS15115 SM00354 helix_turn _helix lactose operon repressor CD007_RS15140 SM00450 Rhodanese Homology Domain CD007_RS15155 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CD007_RS15155 SM00091 PAS domain CD007_RS15175 SM00382 ATPases associated with a variety of cellular activities CD007_RS15180 SM00387 Histidine kinase-like ATPases CD007_RS15185 SM00448 cheY-homologous receiver domain CD007_RS15185 SM00862 Transcriptional regulatory protein, C terminal CD007_RS15195 SM00382 ATPases associated with a variety of cellular activities CD007_RS15210 SM00382 ATPases associated with a variety of cellular activities CD007_RS15215 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS15225 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_RS15285 SM00382 ATPases associated with a variety of cellular activities CD007_RS15325 SM01234 CD007_RS15325 CD007_RS15330 SM00947 Carbonic anhydrase CD007_RS15365 SM00382 ATPases associated with a variety of cellular activities CD007_RS15375 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CD007_RS15415 SM00984 UDP binding domain CD007_RS15475 SM00642 Alpha-amylase domain CD007_RS15610 SM00244 prohibitin homologues CD007_RS15665 SM00047 Lysozyme subfamily 2 CD007_RS15715 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_RS15715 SM01134 CD007_RS15715 CD007_RS15720 SM01007 Class II Aldolase and Adducin N-terminal domain CD007_RS15730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_RS15730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS15730 SM00319 Homologues of the ligand binding domain of Tar CD007_RS15735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_RS15735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS15735 SM00319 Homologues of the ligand binding domain of Tar CD007_RS15740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_RS15740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS15740 SM00319 Homologues of the ligand binding domain of Tar CD007_RS15745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_RS15745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS15745 SM00319 Homologues of the ligand binding domain of Tar CD007_RS15765 SM00642 Alpha-amylase domain CD007_RS15770 SM01091 Transporter associated domain CD007_RS15825 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_RS15835 SM00344 helix_turn_helix ASNC type CD007_RS15855 SM00387 Histidine kinase-like ATPases CD007_RS15855 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS15860 SM01298 CD007_RS15860 CD007_RS15865 SM00479 CD007_RS15865 CD007_RS15895 SM00091 PAS domain CD007_RS15895 SM00387 Histidine kinase-like ATPases CD007_RS15900 SM00448 cheY-homologous receiver domain CD007_RS15910 SM00382 ATPases associated with a variety of cellular activities CD007_RS15975 SM00421 helix_turn_helix, Lux Regulon CD007_RS15975 SM00448 cheY-homologous receiver domain CD007_RS15980 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_RS15980 SM00387 Histidine kinase-like ATPases CD007_RS16030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_RS16075 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CD007_RS16075 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CD007_RS16085 SM00923 MbtH-like protein CD007_RS16090 SM00823 Phosphopantetheine attachment site CD007_RS16090 SM00824 Thioesterase CD007_RS16175 SM01240 CD007_RS16175 CD007_RS16275 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_RS16355 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CD007_RS16390 SM00382 ATPases associated with a variety of cellular activities CD007_RS16395 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS16395 SM00866 CD007_RS16395 CD007_RS16425 SM00465 GIY-YIG type nucleases (URI domain) CD007_RS16450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_RS16475 SM00382 ATPases associated with a variety of cellular activities CD007_RS16505 SM00382 ATPases associated with a variety of cellular activities CD007_RS16505 SM00930 CD007_RS16505 CD007_RS16520 SM00493 CD007_RS16520 CD007_RS16575 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS16605 SM00382 ATPases associated with a variety of cellular activities CD007_RS16630 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_RS16635 SM00448 cheY-homologous receiver domain CD007_RS16635 SM00862 Transcriptional regulatory protein, C terminal CD007_RS16640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS16640 SM00387 Histidine kinase-like ATPases CD007_RS16640 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS16680 SM00421 helix_turn_helix, Lux Regulon CD007_RS16680 SM00448 cheY-homologous receiver domain CD007_RS16685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS16685 SM00387 Histidine kinase-like ATPases CD007_RS16720 SM00382 ATPases associated with a variety of cellular activities CD007_RS16745 SM00387 Histidine kinase-like ATPases CD007_RS16745 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS16750 SM00448 cheY-homologous receiver domain CD007_RS16750 SM00862 Transcriptional regulatory protein, C terminal CD007_RS16770 SM00835 Cupin CD007_RS16785 SM00382 ATPases associated with a variety of cellular activities CD007_RS16795 SM00382 ATPases associated with a variety of cellular activities CD007_RS16990 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_RS16990 SM00357 Cold shock protein domain CD007_RS16990 SM00955 CD007_RS16990 CD007_RS17010 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS17015 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS17020 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS17030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_RS17030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS17035 SM00387 Histidine kinase-like ATPases CD007_RS17035 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS17040 SM00448 cheY-homologous receiver domain CD007_RS17040 SM00862 Transcriptional regulatory protein, C terminal CD007_RS17055 SM00382 ATPases associated with a variety of cellular activities CD007_RS17070 SM01260 CD007_RS17070 CD007_RS17075 SM00382 ATPases associated with a variety of cellular activities CD007_RS17100 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_RS17100 SM00382 ATPases associated with a variety of cellular activities CD007_RS17125 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_RS17125 SM00382 ATPases associated with a variety of cellular activities CD007_RS17160 SM01192 CD007_RS17160 CD007_RS17160 SM01193 CD007_RS17160 CD007_RS17180 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CD007_RS17195 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS17225 SM00636 CD007_RS17225 CD007_RS17245 SM00421 helix_turn_helix, Lux Regulon CD007_RS17245 SM00448 cheY-homologous receiver domain CD007_RS17260 SM00382 ATPases associated with a variety of cellular activities CD007_RS17270 SM00331 Sigma factor PP2C-like phosphatases CD007_RS17300 SM00354 helix_turn _helix lactose operon repressor CD007_RS17305 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS17305 SM00895 CD007_RS17305 CD007_RS17405 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS17445 SM00640 Glycosyl hydrolases family 32 CD007_RS17490 SM00642 Alpha-amylase domain CD007_RS17520 SM00642 Alpha-amylase domain CD007_RS17525 SM00354 helix_turn _helix lactose operon repressor CD007_RS17545 SM00947 Carbonic anhydrase CD007_RS17560 SM00382 ATPases associated with a variety of cellular activities CD007_RS17565 SM00387 Histidine kinase-like ATPases CD007_RS17570 SM00448 cheY-homologous receiver domain CD007_RS17570 SM00862 Transcriptional regulatory protein, C terminal CD007_RS17625 SM00028 Tetratricopeptide repeats CD007_RS17630 SM00382 ATPases associated with a variety of cellular activities CD007_RS17735 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS17735 SM00866 CD007_RS17735 CD007_RS17745 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS17760 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS17800 SM00382 ATPases associated with a variety of cellular activities CD007_RS17805 SM00487 DEAD-like helicases superfamily CD007_RS17805 SM00490 helicase superfamily c-terminal domain CD007_RS17830 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_RS17840 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_RS17840 SM00245 tail specific protease CD007_RS17850 SM00382 ATPases associated with a variety of cellular activities CD007_RS17870 SM00957 SecA DEAD-like domain CD007_RS17870 SM00958 SecA preprotein cross-linking domain CD007_RS17960 SM00487 DEAD-like helicases superfamily CD007_RS17960 SM00490 helicase superfamily c-terminal domain CD007_RS17970 SM00421 helix_turn_helix, Lux Regulon CD007_RS17970 SM00448 cheY-homologous receiver domain CD007_RS17975 SM00387 Histidine kinase-like ATPases CD007_RS18015 SM00984 UDP binding domain CD007_RS18040 SM00646 CD007_RS18040 CD007_RS18085 SM00382 ATPases associated with a variety of cellular activities CD007_RS18145 SM00047 Lysozyme subfamily 2 CD007_RS18145 SM00287 Bacterial SH3 domain homologues CD007_RS18195 SM00854 Bacterial capsule synthesis protein PGA_cap CD007_RS18210 SM00354 helix_turn _helix lactose operon repressor CD007_RS18225 SM00382 ATPases associated with a variety of cellular activities CD007_RS18240 SM00287 Bacterial SH3 domain homologues CD007_RS18295 SM00903 Flavin reductase like domain CD007_RS18310 SM00344 helix_turn_helix ASNC type CD007_RS18360 SM00984 UDP binding domain CD007_RS18390 SM00487 DEAD-like helicases superfamily CD007_RS18390 SM00490 helicase superfamily c-terminal domain CD007_RS18405 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_RS18405 SM01134 CD007_RS18405 CD007_RS18435 SM00448 cheY-homologous receiver domain CD007_RS18435 SM00862 Transcriptional regulatory protein, C terminal CD007_RS18445 SM00387 Histidine kinase-like ATPases CD007_RS18465 SM00028 Tetratricopeptide repeats CD007_RS18495 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS18505 SM00710 Parallel beta-helix repeats CD007_RS18505 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CD007_RS18535 SM00938 Nitrogen regulatory protein P-II CD007_RS18540 SM00014 Acid phosphatase homologues CD007_RS18570 SM00155 Phospholipase D. Active site motifs. CD007_RS18575 SM00422 helix_turn_helix, mercury resistance CD007_RS18630 SM00028 Tetratricopeptide repeats CD007_RS18640 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_RS18655 SM00327 von Willebrand factor (vWF) type A domain CD007_RS18665 SM00327 von Willebrand factor (vWF) type A domain CD007_RS18700 SM00382 ATPases associated with a variety of cellular activities CD007_RS18760 SM00226 Low molecular weight phosphatase family CD007_RS18800 SM00937 CD007_RS18800 CD007_RS18820 SM00919 Malic enzyme, NAD binding domain CD007_RS18820 SM01274 CD007_RS18820 CD007_RS18835 SM00357 Cold shock protein domain CD007_RS18835 SM00382 ATPases associated with a variety of cellular activities CD007_RS18835 SM00959 Rho termination factor, N-terminal domain CD007_RS18860 SM00448 cheY-homologous receiver domain CD007_RS18890 SM00155 Phospholipase D. Active site motifs. CD007_RS18910 SM00382 ATPases associated with a variety of cellular activities CD007_RS18915 SM00155 Phospholipase D. Active site motifs. CD007_RS18940 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_RS18955 SM00100 Cyclic nucleotide-monophosphate binding domain CD007_RS18955 SM00419 helix_turn_helix, cAMP Regulatory protein CD007_RS18965 SM00836 DALR anticodon binding domain CD007_RS18965 SM01016 Arginyl tRNA synthetase N terminal dom CD007_RS18985 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_RS19035 SM00028 Tetratricopeptide repeats CD007_RS19065 SM00382 ATPases associated with a variety of cellular activities CD007_RS19110 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS19115 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CD007_RS19135 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_RS19230 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CD007_RS19270 SM00858 CD007_RS19270 CD007_RS19325 SM00986 Uracil DNA glycosylase superfamily CD007_RS19325 SM00987 UreE urease accessory protein, C-terminal domain CD007_RS19360 SM00640 Glycosyl hydrolases family 32 CD007_RS19375 SM01061 CAT RNA binding domain CD007_RS19525 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CD007_RS19560 SM01061 CAT RNA binding domain CD007_RS19575 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS19580 SM00363 S4 RNA-binding domain CD007_RS19590 SM00530 Helix-turn-helix XRE-family like proteins CD007_RS19605 SM00954 Region found in RelA / SpoT proteins CD007_RS19690 SM01060 CD007_RS19690 CD007_RS19705 SM00382 ATPases associated with a variety of cellular activities CD007_RS19740 SM00382 ATPases associated with a variety of cellular activities CD007_RS19745 SM00382 ATPases associated with a variety of cellular activities CD007_RS19790 SM00382 ATPases associated with a variety of cellular activities CD007_RS19840 SM00421 helix_turn_helix, Lux Regulon CD007_RS19840 SM00448 cheY-homologous receiver domain CD007_RS19875 SM00882 Coenzyme A transferase CD007_RS19880 SM00882 Coenzyme A transferase CD007_RS19910 SM01060 CD007_RS19910 CD007_RS19925 SM01061 CAT RNA binding domain CD007_RS19940 SM00487 DEAD-like helicases superfamily CD007_RS19940 SM00490 helicase superfamily c-terminal domain CD007_RS20090 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CD007_RS20100 SM01133 CD007_RS20100 CD007_RS20130 SM00382 ATPases associated with a variety of cellular activities CD007_RS20140 SM00062 Bacterial periplasmic substrate-binding proteins CD007_RS20205 SM00382 ATPases associated with a variety of cellular activities CD007_RS20210 SM00387 Histidine kinase-like ATPases CD007_RS20215 SM00448 cheY-homologous receiver domain CD007_RS20215 SM00862 Transcriptional regulatory protein, C terminal CD007_RS20270 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_RS20270 SM01134 CD007_RS20270 CD007_RS20295 SM00387 Histidine kinase-like ATPases CD007_RS20320 SM00382 ATPases associated with a variety of cellular activities CD007_RS20350 SM00564 beta-propeller repeat CD007_RS20385 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS20410 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS20410 SM00895 CD007_RS20410 CD007_RS20425 SM01350 CD007_RS20425 CD007_RS20460 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_RS20460 SM00866 CD007_RS20460 CD007_RS20475 SM00382 ATPases associated with a variety of cellular activities CD007_RS20575 SM00091 PAS domain CD007_RS20575 SM00382 ATPases associated with a variety of cellular activities CD007_RS20585 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_RS20590 SM00849 Metallo-beta-lactamase superfamily CD007_RS20605 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CD007_RS20605 SM00091 PAS domain CD007_RS20605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_RS20605 SM00387 Histidine kinase-like ATPases CD007_RS20605 SM00388 His Kinase A (phosphoacceptor) domain CD007_RS20610 SM00448 cheY-homologous receiver domain CD007_RS20610 SM00862 Transcriptional regulatory protein, C terminal CD007_RS20635 SM00788 Adenylosuccinate synthetase CD007_RS20645 SM00382 ATPases associated with a variety of cellular activities CD007_RS20680 SM00267 diguanylate cyclase CD007_RS20705 SM01131 CD007_RS20705 CD007_RS20725 SM00422 helix_turn_helix, mercury resistance CD007_RS20740 SM00849 Metallo-beta-lactamase superfamily CD007_RS20745 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_RS20785 SM00422 helix_turn_helix, mercury resistance CD007_RS20810 SM01266 CD007_RS20810 CD007_RS20820 SM00354 helix_turn _helix lactose operon repressor CD007_RS20850 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_RS20870 SM00470 ParB-like nuclease domain CD007_RS20885 SM00470 ParB-like nuclease domain CD007_RS20895 SM01228 CD007_RS20895 CD007_RS20905 SM00322 K homology RNA-binding domain CD007_RS20905 SM00393 Putative single-stranded nucleic acids-binding domain CD007_RS20905 SM01245 CD007_RS20905