A1D11_RS00010	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS00075	SM01133	A1D11_RS00075
A1D11_RS00085	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
A1D11_RS00130	SM00487	DEAD-like helicases superfamily
A1D11_RS00130	SM00490	helicase superfamily c-terminal domain
A1D11_RS00200	SM00656	A1D11_RS00200
A1D11_RS00240	SM00487	DEAD-like helicases superfamily
A1D11_RS00240	SM00490	helicase superfamily c-terminal domain
A1D11_RS00255	SM01061	CAT RNA binding domain
A1D11_RS00270	SM01060	A1D11_RS00270
A1D11_RS00300	SM00882	Coenzyme A transferase
A1D11_RS00305	SM00882	Coenzyme A transferase
A1D11_RS00315	SM00091	PAS domain
A1D11_RS00315	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS00330	SM00966	SpoVT / AbrB like domain 
A1D11_RS00395	SM00421	helix_turn_helix, Lux Regulon
A1D11_RS00395	SM00448	cheY-homologous receiver domain
A1D11_RS00400	SM00387	Histidine kinase-like ATPases
A1D11_RS00435	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS00465	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS00470	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS00505	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS00520	SM01060	A1D11_RS00520
A1D11_RS00600	SM00954	Region found in RelA / SpoT proteins
A1D11_RS00605	SM00363	S4 RNA-binding domain
A1D11_RS00610	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS00615	SM00028	Tetratricopeptide repeats
A1D11_RS00635	SM01061	CAT RNA binding domain
A1D11_RS00660	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A1D11_RS00690	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS00835	SM01061	CAT RNA binding domain
A1D11_RS00855	SM00640	Glycosyl hydrolases family 32
A1D11_RS00860	SM01266	A1D11_RS00860
A1D11_RS00890	SM00986	Uracil DNA glycosylase superfamily
A1D11_RS00890	SM00987	UreE urease accessory protein, C-terminal domain 
A1D11_RS01010	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A1D11_RS01025	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS01070	SM00028	Tetratricopeptide repeats
A1D11_RS01120	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1D11_RS01135	SM00836	DALR anticodon binding domain
A1D11_RS01135	SM01016	Arginyl tRNA synthetase N terminal dom
A1D11_RS01145	SM00100	Cyclic nucleotide-monophosphate binding domain
A1D11_RS01145	SM00419	helix_turn_helix, cAMP Regulatory protein
A1D11_RS01160	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A1D11_RS01180	SM00155	Phospholipase D. Active site motifs.
A1D11_RS01185	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS01205	SM00155	Phospholipase D. Active site motifs.
A1D11_RS01235	SM00448	cheY-homologous receiver domain
A1D11_RS01260	SM00357	Cold shock protein domain
A1D11_RS01260	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS01260	SM00959	Rho termination factor, N-terminal domain
A1D11_RS01275	SM00919	Malic enzyme, NAD binding domain
A1D11_RS01275	SM01274	A1D11_RS01275
A1D11_RS01295	SM00937	A1D11_RS01295
A1D11_RS01335	SM00226	Low molecular weight phosphatase family
A1D11_RS01395	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS01430	SM00327	von Willebrand factor (vWF) type A domain
A1D11_RS01435	SM00327	von Willebrand factor (vWF) type A domain
A1D11_RS01445	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1D11_RS01450	SM00028	Tetratricopeptide repeats
A1D11_RS01495	SM00422	helix_turn_helix, mercury resistance
A1D11_RS01500	SM00155	Phospholipase D. Active site motifs.
A1D11_RS01510	SM00858	A1D11_RS01510
A1D11_RS01565	SM00014	Acid phosphatase homologues
A1D11_RS01575	SM00938	Nitrogen regulatory protein P-II
A1D11_RS01610	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS01635	SM00028	Tetratricopeptide repeats
A1D11_RS01665	SM00420	helix_turn_helix, Deoxyribose operon repressor
A1D11_RS01665	SM01134	A1D11_RS01665
A1D11_RS01675	SM00487	DEAD-like helicases superfamily
A1D11_RS01675	SM00490	helicase superfamily c-terminal domain
A1D11_RS01700	SM00984	UDP binding domain
A1D11_RS01770	SM00344	helix_turn_helix ASNC type
A1D11_RS01805	SM00903	Flavin reductase like domain
A1D11_RS01845	SM00287	Bacterial SH3 domain homologues
A1D11_RS01860	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS01875	SM00354	helix_turn _helix lactose operon repressor
A1D11_RS01905	SM00854	Bacterial capsule synthesis protein PGA_cap
A1D11_RS01955	SM00047	Lysozyme subfamily 2
A1D11_RS01955	SM00287	Bacterial SH3 domain homologues
A1D11_RS01990	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS02020	SM00646	A1D11_RS02020
A1D11_RS02045	SM00984	UDP binding domain
A1D11_RS02085	SM00387	Histidine kinase-like ATPases
A1D11_RS02090	SM00421	helix_turn_helix, Lux Regulon
A1D11_RS02090	SM00448	cheY-homologous receiver domain
A1D11_RS02100	SM00487	DEAD-like helicases superfamily
A1D11_RS02100	SM00490	helicase superfamily c-terminal domain
A1D11_RS02190	SM00957	SecA DEAD-like domain
A1D11_RS02190	SM00958	SecA preprotein cross-linking domain
A1D11_RS02195	SM00937	A1D11_RS02195
A1D11_RS02210	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS02220	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1D11_RS02220	SM00245	tail specific protease
A1D11_RS02230	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1D11_RS02265	SM00487	DEAD-like helicases superfamily
A1D11_RS02265	SM00490	helicase superfamily c-terminal domain
A1D11_RS02270	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS02305	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS02305	SM00866	A1D11_RS02305
A1D11_RS02405	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS02410	SM00028	Tetratricopeptide repeats
A1D11_RS02460	SM00448	cheY-homologous receiver domain
A1D11_RS02460	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS02465	SM00387	Histidine kinase-like ATPases
A1D11_RS02465	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS02470	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS02485	SM00947	Carbonic anhydrase
A1D11_RS02550	SM00640	Glycosyl hydrolases family 32
A1D11_RS02585	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS02590	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS02605	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS02700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS02700	SM00895	A1D11_RS02700
A1D11_RS02720	SM00636	A1D11_RS02720
A1D11_RS02745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS02760	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A1D11_RS02780	SM01192	A1D11_RS02780
A1D11_RS02780	SM01193	A1D11_RS02780
A1D11_RS02790	SM00984	UDP binding domain
A1D11_RS02860	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS02860	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS02885	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS02885	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS02905	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A1D11_RS02905	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS02915	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS02920	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS02925	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS02940	SM00316	Ribosomal protein S1-like RNA-binding domain
A1D11_RS02940	SM00357	Cold shock protein domain
A1D11_RS02940	SM00955	A1D11_RS02940
A1D11_RS02975	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS03095	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS03125	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS03135	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS03150	SM00835	Cupin
A1D11_RS03165	SM00448	cheY-homologous receiver domain
A1D11_RS03165	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS03170	SM00387	Histidine kinase-like ATPases
A1D11_RS03170	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS03195	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS03230	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS03230	SM00387	Histidine kinase-like ATPases
A1D11_RS03235	SM00421	helix_turn_helix, Lux Regulon
A1D11_RS03235	SM00448	cheY-homologous receiver domain
A1D11_RS03270	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS03270	SM00387	Histidine kinase-like ATPases
A1D11_RS03270	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS03275	SM00448	cheY-homologous receiver domain
A1D11_RS03275	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS03280	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1D11_RS03290	SM00822	A1D11_RS03290
A1D11_RS03305	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS03320	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS03370	SM00493	A1D11_RS03370
A1D11_RS03385	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS03385	SM00930	A1D11_RS03385
A1D11_RS03405	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS03435	SM00465	GIY-YIG type nucleases (URI domain)
A1D11_RS03465	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS03465	SM00866	A1D11_RS03465
A1D11_RS03470	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS03530	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS03535	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS03645	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1D11_RS03740	SM01240	A1D11_RS03740
A1D11_RS03830	SM00823	Phosphopantetheine attachment site
A1D11_RS03830	SM00824	Thioesterase
A1D11_RS03835	SM00923	MbtH-like protein
A1D11_RS03845	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A1D11_RS03845	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A1D11_RS03870	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A1D11_RS03910	SM00052	Putative diguanylate phosphodiesterase
A1D11_RS03935	SM00387	Histidine kinase-like ATPases
A1D11_RS03940	SM00421	helix_turn_helix, Lux Regulon
A1D11_RS03940	SM00448	cheY-homologous receiver domain
A1D11_RS04005	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS04015	SM00448	cheY-homologous receiver domain
A1D11_RS04020	SM00387	Histidine kinase-like ATPases
A1D11_RS04050	SM00479	A1D11_RS04050
A1D11_RS04055	SM01298	A1D11_RS04055
A1D11_RS04060	SM00387	Histidine kinase-like ATPases
A1D11_RS04060	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS04080	SM00344	helix_turn_helix ASNC type
A1D11_RS04090	SM00316	Ribosomal protein S1-like RNA-binding domain
A1D11_RS04145	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS04145	SM01091	Transporter associated domain
A1D11_RS04150	SM00642	Alpha-amylase domain
A1D11_RS04175	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A1D11_RS04175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS04175	SM00319	Homologues of the ligand binding domain of Tar
A1D11_RS04180	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A1D11_RS04180	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS04180	SM00319	Homologues of the ligand binding domain of Tar
A1D11_RS04185	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A1D11_RS04185	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS04185	SM00319	Homologues of the ligand binding domain of Tar
A1D11_RS04190	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A1D11_RS04190	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS04190	SM00319	Homologues of the ligand binding domain of Tar
A1D11_RS04195	SM01007	Class II Aldolase and Adducin N-terminal domain
A1D11_RS04200	SM00420	helix_turn_helix, Deoxyribose operon repressor
A1D11_RS04200	SM01134	A1D11_RS04200
A1D11_RS04250	SM00047	Lysozyme subfamily 2
A1D11_RS04305	SM00244	prohibitin homologues
A1D11_RS04445	SM00642	Alpha-amylase domain
A1D11_RS04500	SM00984	UDP binding domain
A1D11_RS04540	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A1D11_RS04550	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS04585	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A1D11_RS04590	SM00947	Carbonic anhydrase
A1D11_RS04595	SM01234	A1D11_RS04595
A1D11_RS04640	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS04700	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1D11_RS04710	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A1D11_RS04720	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS04725	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS04740	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS04750	SM00448	cheY-homologous receiver domain
A1D11_RS04750	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS04755	SM00387	Histidine kinase-like ATPases
A1D11_RS04760	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS04780	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A1D11_RS04780	SM00091	PAS domain
A1D11_RS04795	SM00450	Rhodanese Homology Domain
A1D11_RS04825	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1D11_RS04825	SM00876	Biotin and Thiamin Synthesis associated domain
A1D11_RS04900	SM00363	S4 RNA-binding domain
A1D11_RS04905	SM00420	helix_turn_helix, Deoxyribose operon repressor
A1D11_RS04940	SM00642	Alpha-amylase domain
A1D11_RS04960	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS04965	SM00919	Malic enzyme, NAD binding domain
A1D11_RS04965	SM01274	A1D11_RS04965
A1D11_RS05000	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS05000	SM00843	A1D11_RS05000
A1D11_RS05025	SM00830	Chorismate mutase type II
A1D11_RS05030	SM00354	helix_turn _helix lactose operon repressor
A1D11_RS05050	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS05065	SM00363	S4 RNA-binding domain
A1D11_RS05100	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS05105	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS05135	SM00363	S4 RNA-binding domain
A1D11_RS05135	SM01390	A1D11_RS05135
A1D11_RS05140	SM00267	diguanylate cyclase
A1D11_RS05145	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A1D11_RS05175	SM00981	A1D11_RS05175
A1D11_RS05235	SM00852	Probable molybdopterin binding domain
A1D11_RS05255	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS05260	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS05290	SM00481	DNA polymerase alpha chain like domain
A1D11_RS05295	SM00919	Malic enzyme, NAD binding domain
A1D11_RS05295	SM01274	A1D11_RS05295
A1D11_RS05340	SM01329	A1D11_RS05340
A1D11_RS05350	SM00448	cheY-homologous receiver domain
A1D11_RS05350	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS05355	SM00091	PAS domain
A1D11_RS05355	SM00387	Histidine kinase-like ATPases
A1D11_RS05355	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS05360	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A1D11_RS05360	SM00474	3'-5' exonuclease
A1D11_RS05360	SM00475	5'-3' exonuclease
A1D11_RS05360	SM00482	DNA polymerase A domain
A1D11_RS05365	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A1D11_RS05365	SM01232	A1D11_RS05365
A1D11_RS05395	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A1D11_RS05415	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS05430	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A1D11_RS05440	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A1D11_RS05440	SM00387	Histidine kinase-like ATPases
A1D11_RS05445	SM00448	cheY-homologous receiver domain
A1D11_RS05445	SM00850	LytTr DNA-binding domain
A1D11_RS05520	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS05535	SM01007	Class II Aldolase and Adducin N-terminal domain
A1D11_RS05565	SM00813	Alpha-L-arabinofuranosidase C-terminus
A1D11_RS05600	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A1D11_RS05610	SM00873	B3/4 domain
A1D11_RS05610	SM00874	tRNA synthetase B5 domain
A1D11_RS05610	SM00896	Ferredoxin-fold anticodon binding domain
A1D11_RS05630	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A1D11_RS05630	SM00481	DNA polymerase alpha chain like domain
A1D11_RS05630	SM00483	DNA polymerase X family
A1D11_RS05635	SM00463	Small MutS-related domain
A1D11_RS05635	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A1D11_RS05635	SM00534	ATPase domain of DNA mismatch repair MUTS family
A1D11_RS05660	SM00893	Electron transfer flavoprotein domain
A1D11_RS05665	SM00893	Electron transfer flavoprotein domain
A1D11_RS05670	SM00813	Alpha-L-arabinofuranosidase C-terminus
A1D11_RS05680	SM00465	GIY-YIG type nucleases (URI domain)
A1D11_RS05715	SM00421	helix_turn_helix, Lux Regulon
A1D11_RS05720	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS05730	SM00909	Sporulation and spore germination
A1D11_RS05780	SM00917	LeuA allosteric (dimerisation) domain
A1D11_RS05785	SM01329	A1D11_RS05785
A1D11_RS05810	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS05810	SM00994	ClpX C4-type zinc finger
A1D11_RS05810	SM01086	C-terminal, D2-small domain, of ClpB protein
A1D11_RS05815	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS05820	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS05820	SM00464	Found in ATP-dependent protease La (LON)
A1D11_RS05855	SM01004	Delta-aminolevulinic acid dehydratase
A1D11_RS05865	SM00257	Lysin motif
A1D11_RS05960	SM01317	A1D11_RS05960
A1D11_RS06005	SM00257	Lysin motif
A1D11_RS06035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS06035	SM00866	A1D11_RS06035
A1D11_RS06045	SM00060	Fibronectin type 3 domain
A1D11_RS06045	SM00495	Chitin-binding domain type 3
A1D11_RS06045	SM00636	A1D11_RS06045
A1D11_RS06050	SM00636	A1D11_RS06050
A1D11_RS06085	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A1D11_RS06090	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS06110	SM01323	A1D11_RS06110
A1D11_RS06160	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A1D11_RS06160	SM00954	Region found in RelA / SpoT proteins
A1D11_RS06170	SM00287	Bacterial SH3 domain homologues
A1D11_RS06170	SM00646	A1D11_RS06170
A1D11_RS06195	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS06215	SM00028	Tetratricopeptide repeats
A1D11_RS06220	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS06245	SM00062	Bacterial periplasmic substrate-binding proteins
A1D11_RS06245	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A1D11_RS06250	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS06260	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A1D11_RS06270	SM00732	Likely ribonuclease with RNase H fold.
A1D11_RS06325	SM00650	Ribosomal RNA adenine dimethylases
A1D11_RS06355	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A1D11_RS06355	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A1D11_RS06385	SM00479	A1D11_RS06385
A1D11_RS06435	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS06440	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS06520	SM01103	A1D11_RS06520
A1D11_RS06530	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A1D11_RS06550	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A1D11_RS06560	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS06590	SM00838	Elongation factor G C-terminus
A1D11_RS06595	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1D11_RS06615	SM00271	DnaJ molecular chaperone homology domain
A1D11_RS06630	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1D11_RS06680	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A1D11_RS06720	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS06735	SM00400	zinc finger
A1D11_RS06735	SM00493	A1D11_RS06735
A1D11_RS06770	SM00487	DEAD-like helicases superfamily
A1D11_RS06770	SM00490	helicase superfamily c-terminal domain
A1D11_RS06775	SM00518	AP endonuclease family 2
A1D11_RS06810	SM00257	Lysin motif
A1D11_RS06855	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS06860	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS06890	SM00028	Tetratricopeptide repeats
A1D11_RS06910	SM00631	A1D11_RS06910
A1D11_RS06925	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS06950	SM01091	Transporter associated domain
A1D11_RS06960	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS07020	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS07035	SM00487	DEAD-like helicases superfamily
A1D11_RS07035	SM00490	helicase superfamily c-terminal domain
A1D11_RS07055	SM00450	Rhodanese Homology Domain
A1D11_RS07065	SM00529	Helix-turn-helix diphteria tox regulatory element
A1D11_RS07100	SM00841	Elongation factor P, C-terminal
A1D11_RS07100	SM01185	A1D11_RS07100
A1D11_RS07110	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS07155	SM00878	Biotin carboxylase C-terminal domain
A1D11_RS07190	SM00861	Transketolase, pyrimidine binding domain
A1D11_RS07195	SM00363	S4 RNA-binding domain
A1D11_RS07210	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1D11_RS07215	SM00448	cheY-homologous receiver domain
A1D11_RS07235	SM00646	A1D11_RS07235
A1D11_RS07280	SM00091	PAS domain
A1D11_RS07280	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS07290	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A1D11_RS07310	SM00861	Transketolase, pyrimidine binding domain
A1D11_RS07325	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A1D11_RS07335	SM00062	Bacterial periplasmic substrate-binding proteins
A1D11_RS07335	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A1D11_RS07345	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS07395	SM01350	A1D11_RS07395
A1D11_RS07405	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS07435	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS07540	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS07545	SM00870	A1D11_RS07545
A1D11_RS07560	SM00919	Malic enzyme, NAD binding domain
A1D11_RS07560	SM01274	A1D11_RS07560
A1D11_RS07600	SM00936	Penicillin-binding protein 5, C-terminal domain 
A1D11_RS07610	SM00387	Histidine kinase-like ATPases
A1D11_RS07735	SM00857	Resolvase, N terminal domain
A1D11_RS07825	SM00644	A1D11_RS07825
A1D11_RS07925	SM00474	3'-5' exonuclease
A1D11_RS07925	SM00482	DNA polymerase A domain
A1D11_RS07970	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS07995	SM00465	GIY-YIG type nucleases (URI domain)
A1D11_RS08040	SM00857	Resolvase, N terminal domain
A1D11_RS08050	SM00710	Parallel beta-helix repeats
A1D11_RS08050	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
A1D11_RS08065	SM00357	Cold shock protein domain
A1D11_RS08150	SM00363	S4 RNA-binding domain
A1D11_RS08170	SM00448	cheY-homologous receiver domain
A1D11_RS08170	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS08175	SM00091	PAS domain
A1D11_RS08175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS08175	SM00387	Histidine kinase-like ATPases
A1D11_RS08175	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS08215	SM00487	DEAD-like helicases superfamily
A1D11_RS08215	SM00490	helicase superfamily c-terminal domain
A1D11_RS08225	SM00257	Lysin motif
A1D11_RS08245	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A1D11_RS08280	SM00316	Ribosomal protein S1-like RNA-binding domain
A1D11_RS08285	SM01240	A1D11_RS08285
A1D11_RS08330	SM00411	bacterial (prokaryotic) histone like domain
A1D11_RS08360	SM00562	A1D11_RS08360
A1D11_RS08365	SM00138	Methyltransferase, chemotaxis proteins 
A1D11_RS08430	SM00028	Tetratricopeptide repeats
A1D11_RS08435	SM00914	A1D11_RS08435
A1D11_RS08470	SM00835	Cupin
A1D11_RS08490	SM00851	MGS-like domain
A1D11_RS08535	SM00479	A1D11_RS08535
A1D11_RS08535	SM00491	A1D11_RS08535
A1D11_RS08560	SM00478	endonuclease III
A1D11_RS08560	SM00525	A1D11_RS08560
A1D11_RS08620	SM00487	DEAD-like helicases superfamily
A1D11_RS08620	SM00490	helicase superfamily c-terminal domain
A1D11_RS08645	SM00981	A1D11_RS08645
A1D11_RS08655	SM00491	A1D11_RS08655
A1D11_RS08670	SM00354	helix_turn _helix lactose operon repressor
A1D11_RS08725	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A1D11_RS08725	SM00475	5'-3' exonuclease
A1D11_RS08765	SM00357	Cold shock protein domain
A1D11_RS08785	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A1D11_RS08790	SM00567	E-Z type HEAT repeats
A1D11_RS08790	SM00932	Scaffold protein Nfu/NifU N terminal
A1D11_RS08840	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS08880	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS08900	SM00342	helix_turn_helix, arabinose operon control protein
A1D11_RS08900	SM00871	Bacterial transcription activator, effector binding domain
A1D11_RS08910	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS08925	SM00632	A1D11_RS08925
A1D11_RS08925	SM00642	Alpha-amylase domain
A1D11_RS08930	SM01005	Alanine racemase, C-terminal domain
A1D11_RS08975	SM00882	Coenzyme A transferase
A1D11_RS08980	SM00882	Coenzyme A transferase
A1D11_RS09015	SM00014	Acid phosphatase homologues
A1D11_RS09045	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1D11_RS09045	SM00245	tail specific protease
A1D11_RS09150	SM00257	Lysin motif
A1D11_RS09160	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS09165	SM00327	von Willebrand factor (vWF) type A domain
A1D11_RS09170	SM00861	Transketolase, pyrimidine binding domain
A1D11_RS09230	SM00341	Helicase and RNase D C-terminal
A1D11_RS09230	SM00487	DEAD-like helicases superfamily
A1D11_RS09230	SM00490	helicase superfamily c-terminal domain
A1D11_RS09230	SM00956	A1D11_RS09230
A1D11_RS09235	SM00257	Lysin motif
A1D11_RS09245	SM00421	helix_turn_helix, Lux Regulon
A1D11_RS09245	SM00448	cheY-homologous receiver domain
A1D11_RS09280	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A1D11_RS09295	SM00871	Bacterial transcription activator, effector binding domain
A1D11_RS09300	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS09310	SM00342	helix_turn_helix, arabinose operon control protein
A1D11_RS09335	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A1D11_RS09365	SM00822	A1D11_RS09365
A1D11_RS09375	SM00860	SMI1 / KNR4 family
A1D11_RS09580	SM00411	bacterial (prokaryotic) histone like domain
A1D11_RS09600	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS09715	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS09735	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS09880	SM00857	Resolvase, N terminal domain
A1D11_RS09990	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A1D11_RS09995	SM00823	Phosphopantetheine attachment site
A1D11_RS09995	SM00825	Beta-ketoacyl synthase
A1D11_RS10000	SM00823	Phosphopantetheine attachment site
A1D11_RS10005	SM00823	Phosphopantetheine attachment site
A1D11_RS10005	SM00824	Thioesterase
A1D11_RS10025	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A1D11_RS10045	SM00829	Enoylreductase
A1D11_RS10080	SM00257	Lysin motif
A1D11_RS10080	SM00644	A1D11_RS10080
A1D11_RS10090	SM00028	Tetratricopeptide repeats
A1D11_RS10100	SM00342	helix_turn_helix, arabinose operon control protein
A1D11_RS10125	SM00823	Phosphopantetheine attachment site
A1D11_RS10130	SM00823	Phosphopantetheine attachment site
A1D11_RS10135	SM00823	Phosphopantetheine attachment site
A1D11_RS10140	SM00823	Phosphopantetheine attachment site
A1D11_RS10170	SM00878	Biotin carboxylase C-terminal domain
A1D11_RS10215	SM00606	Cellulose Binding Domain Type IV
A1D11_RS10245	SM00434	DNA Topoisomerase IV
A1D11_RS10250	SM00387	Histidine kinase-like ATPases
A1D11_RS10250	SM00433	TopoisomeraseII
A1D11_RS10255	SM00881	CoA binding domain
A1D11_RS10260	SM01207	A1D11_RS10260
A1D11_RS10325	SM00448	cheY-homologous receiver domain
A1D11_RS10350	SM00861	Transketolase, pyrimidine binding domain
A1D11_RS10360	SM00857	Resolvase, N terminal domain
A1D11_RS10365	SM00257	Lysin motif
A1D11_RS10390	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS10475	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS10485	SM00850	LytTr DNA-binding domain
A1D11_RS10500	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS10525	SM00422	helix_turn_helix, mercury resistance
A1D11_RS10570	SM00636	A1D11_RS10570
A1D11_RS10575	SM00257	Lysin motif
A1D11_RS10580	SM00257	Lysin motif
A1D11_RS10710	SM00860	SMI1 / KNR4 family
A1D11_RS10715	SM00860	SMI1 / KNR4 family
A1D11_RS10725	SM00860	SMI1 / KNR4 family
A1D11_RS10750	SM01230	A1D11_RS10750
A1D11_RS10755	SM00422	helix_turn_helix, mercury resistance
A1D11_RS10770	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS10775	SM00646	A1D11_RS10775
A1D11_RS10875	SM00823	Phosphopantetheine attachment site
A1D11_RS10875	SM00825	Beta-ketoacyl synthase
A1D11_RS10875	SM01294	A1D11_RS10875
A1D11_RS10880	SM00822	A1D11_RS10880
A1D11_RS10880	SM00823	Phosphopantetheine attachment site
A1D11_RS10880	SM00825	Beta-ketoacyl synthase
A1D11_RS10880	SM00826	A1D11_RS10880
A1D11_RS10880	SM01294	A1D11_RS10880
A1D11_RS10885	SM00822	A1D11_RS10885
A1D11_RS10885	SM00823	Phosphopantetheine attachment site
A1D11_RS10885	SM00825	Beta-ketoacyl synthase
A1D11_RS10885	SM00826	A1D11_RS10885
A1D11_RS10885	SM01294	A1D11_RS10885
A1D11_RS10890	SM00822	A1D11_RS10890
A1D11_RS10890	SM00823	Phosphopantetheine attachment site
A1D11_RS10890	SM00825	Beta-ketoacyl synthase
A1D11_RS10890	SM00826	A1D11_RS10890
A1D11_RS10890	SM01294	A1D11_RS10890
A1D11_RS10895	SM00822	A1D11_RS10895
A1D11_RS10895	SM00823	Phosphopantetheine attachment site
A1D11_RS10895	SM00825	Beta-ketoacyl synthase
A1D11_RS10895	SM00826	A1D11_RS10895
A1D11_RS10895	SM01294	A1D11_RS10895
A1D11_RS10915	SM00825	Beta-ketoacyl synthase
A1D11_RS10925	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A1D11_RS10930	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A1D11_RS10935	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A1D11_RS10940	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS10960	SM00853	MutL C terminal dimerisation domain
A1D11_RS10960	SM01340	A1D11_RS10960
A1D11_RS10965	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A1D11_RS10965	SM00534	ATPase domain of DNA mismatch repair MUTS family
A1D11_RS10980	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1D11_RS10985	SM01059	Chloramphenicol acetyltransferase
A1D11_RS10995	SM00829	Enoylreductase
A1D11_RS11010	SM00322	K homology RNA-binding domain
A1D11_RS11010	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A1D11_RS11020	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS11025	SM00852	Probable molybdopterin binding domain
A1D11_RS11035	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS11070	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS11075	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS11075	SM00843	A1D11_RS11075
A1D11_RS11090	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS11095	SM01130	A1D11_RS11095
A1D11_RS11105	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A1D11_RS11135	SM00316	Ribosomal protein S1-like RNA-binding domain
A1D11_RS11135	SM00322	K homology RNA-binding domain
A1D11_RS11140	SM01387	A1D11_RS11140
A1D11_RS11145	SM00904	Riboflavin kinase
A1D11_RS11180	SM00316	Ribosomal protein S1-like RNA-binding domain
A1D11_RS11180	SM00322	K homology RNA-binding domain
A1D11_RS11190	SM00479	A1D11_RS11190
A1D11_RS11190	SM00481	DNA polymerase alpha chain like domain
A1D11_RS11260	SM00260	Two component signalling adaptor domain
A1D11_RS11265	SM00073	Histidine Phosphotransfer domain
A1D11_RS11265	SM00260	Two component signalling adaptor domain
A1D11_RS11265	SM00387	Histidine kinase-like ATPases
A1D11_RS11265	SM01231	A1D11_RS11265
A1D11_RS11270	SM00448	cheY-homologous receiver domain
A1D11_RS11280	SM00962	SRP54-type protein, GTPase domain
A1D11_RS11315	SM00448	cheY-homologous receiver domain
A1D11_RS11365	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS11405	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS11405	SM01086	C-terminal, D2-small domain, of ClpB protein
A1D11_RS11425	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A1D11_RS11425	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A1D11_RS11425	SM00493	A1D11_RS11425
A1D11_RS11435	SM00881	CoA binding domain
A1D11_RS11495	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS11495	SM00962	SRP54-type protein, GTPase domain
A1D11_RS11495	SM00963	SRP54-type protein, helical bundle domain
A1D11_RS11505	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS11505	SM00962	SRP54-type protein, GTPase domain
A1D11_RS11505	SM00963	SRP54-type protein, helical bundle domain
A1D11_RS11510	SM00968	SMC proteins Flexible Hinge Domain
A1D11_RS11515	SM00358	Double-stranded RNA binding motif
A1D11_RS11515	SM00535	Ribonuclease III family
A1D11_RS11525	SM00822	A1D11_RS11525
A1D11_RS11530	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A1D11_RS11545	SM00487	DEAD-like helicases superfamily
A1D11_RS11545	SM00490	helicase superfamily c-terminal domain
A1D11_RS11560	SM01120	A1D11_RS11560
A1D11_RS11560	SM01121	A1D11_RS11560
A1D11_RS11580	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
A1D11_RS11595	SM00220	Serine/Threonine protein kinases, catalytic domain
A1D11_RS11595	SM00740	A1D11_RS11595
A1D11_RS11600	SM00331	Sigma factor PP2C-like phosphatases
A1D11_RS11600	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A1D11_RS11625	SM00487	DEAD-like helicases superfamily
A1D11_RS11625	SM00490	helicase superfamily c-terminal domain
A1D11_RS11635	SM01409	A1D11_RS11635
A1D11_RS11640	SM00072	Guanylate kinase homologues.
A1D11_RS11655	SM00831	Cation transporter/ATPase, N-terminus
A1D11_RS11705	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A1D11_RS11720	SM00851	MGS-like domain
A1D11_RS11720	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A1D11_RS11720	SM01209	A1D11_RS11720
A1D11_RS11725	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A1D11_RS11750	SM00363	S4 RNA-binding domain
A1D11_RS11775	SM00363	S4 RNA-binding domain
A1D11_RS11810	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS11835	SM00864	Tubulin/FtsZ family, GTPase domain
A1D11_RS11835	SM00865	Tubulin/FtsZ family, C-terminal domain
A1D11_RS11840	SM00842	Cell division protein FtsA
A1D11_RS11895	SM00740	A1D11_RS11895
A1D11_RS11900	SM00740	A1D11_RS11900
A1D11_RS11955	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1D11_RS12010	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS12055	SM00878	Biotin carboxylase C-terminal domain
A1D11_RS12080	SM00670	Large family of predicted nucleotide-binding domains
A1D11_RS12100	SM00838	Elongation factor G C-terminus
A1D11_RS12195	SM00861	Transketolase, pyrimidine binding domain
A1D11_RS12230	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS12250	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A1D11_RS12250	SM00091	PAS domain
A1D11_RS12250	SM00387	Histidine kinase-like ATPases
A1D11_RS12250	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS12255	SM00966	SpoVT / AbrB like domain 
A1D11_RS12275	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS12300	SM00420	helix_turn_helix, Deoxyribose operon repressor
A1D11_RS12300	SM01134	A1D11_RS12300
A1D11_RS12305	SM01066	Carbohydrate binding domain
A1D11_RS12310	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS12325	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS12330	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS12350	SM00852	Probable molybdopterin binding domain
A1D11_RS12450	SM00052	Putative diguanylate phosphodiesterase
A1D11_RS12465	SM00257	Lysin motif
A1D11_RS12480	SM00260	Two component signalling adaptor domain
A1D11_RS12480	SM00448	cheY-homologous receiver domain
A1D11_RS12490	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A1D11_RS12490	SM00091	PAS domain
A1D11_RS12490	SM00387	Histidine kinase-like ATPases
A1D11_RS12490	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS12510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A1D11_RS12510	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS12545	SM01061	CAT RNA binding domain
A1D11_RS12550	SM00354	helix_turn _helix lactose operon repressor
A1D11_RS12640	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS12640	SM01086	C-terminal, D2-small domain, of ClpB protein
A1D11_RS12655	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS12660	SM00387	Histidine kinase-like ATPases
A1D11_RS12660	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS12685	SM01007	Class II Aldolase and Adducin N-terminal domain
A1D11_RS12725	SM00091	PAS domain
A1D11_RS12725	SM00387	Histidine kinase-like ATPases
A1D11_RS12725	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS12795	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
A1D11_RS12835	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS12845	SM00422	helix_turn_helix, mercury resistance
A1D11_RS12850	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS12850	SM00924	MgtE intracellular N domain
A1D11_RS12865	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS12865	SM00387	Histidine kinase-like ATPases
A1D11_RS12865	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS12870	SM00448	cheY-homologous receiver domain
A1D11_RS12870	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS12885	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS12910	SM00855	Phosphoglycerate mutase family
A1D11_RS12925	SM00028	Tetratricopeptide repeats
A1D11_RS12945	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS12960	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A1D11_RS13025	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS13035	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A1D11_RS13050	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS13075	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1D11_RS13125	SM00257	Lysin motif
A1D11_RS13125	SM00644	A1D11_RS13125
A1D11_RS13195	SM00257	Lysin motif
A1D11_RS13285	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS13300	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS13320	SM00257	Lysin motif
A1D11_RS13320	SM00644	A1D11_RS13320
A1D11_RS13325	SM00028	Tetratricopeptide repeats
A1D11_RS13340	SM00858	A1D11_RS13340
A1D11_RS13350	SM00354	helix_turn _helix lactose operon repressor
A1D11_RS13375	SM00835	Cupin
A1D11_RS13385	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS13445	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A1D11_RS13445	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A1D11_RS13510	SM00710	Parallel beta-helix repeats
A1D11_RS13700	SM00954	Region found in RelA / SpoT proteins
A1D11_RS13710	SM01118	A1D11_RS13710
A1D11_RS13770	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS13775	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS13820	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS13835	SM00825	Beta-ketoacyl synthase
A1D11_RS13885	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A1D11_RS13890	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A1D11_RS13910	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A1D11_RS13970	SM00316	Ribosomal protein S1-like RNA-binding domain
A1D11_RS14000	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A1D11_RS14070	SM00354	helix_turn _helix lactose operon repressor
A1D11_RS14080	SM00342	helix_turn_helix, arabinose operon control protein
A1D11_RS14205	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS14240	SM00894	Excalibur calcium-binding domain
A1D11_RS14250	SM00914	A1D11_RS14250
A1D11_RS14265	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A1D11_RS14300	SM00855	Phosphoglycerate mutase family
A1D11_RS14320	SM00829	Enoylreductase
A1D11_RS14360	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS14440	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS14470	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS14505	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A1D11_RS14525	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS14560	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1D11_RS14615	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS14620	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS14670	SM01091	Transporter associated domain
A1D11_RS14675	SM00422	helix_turn_helix, mercury resistance
A1D11_RS14680	SM01091	Transporter associated domain
A1D11_RS14695	SM00563	Phosphate acyltransferases
A1D11_RS14720	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A1D11_RS14775	SM00257	Lysin motif
A1D11_RS14780	SM00098	Alkaline phosphatase homologues
A1D11_RS14800	SM00257	Lysin motif
A1D11_RS14820	SM00421	helix_turn_helix, Lux Regulon
A1D11_RS14820	SM00448	cheY-homologous receiver domain
A1D11_RS14825	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A1D11_RS14825	SM00387	Histidine kinase-like ATPases
A1D11_RS14875	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS14885	SM00363	S4 RNA-binding domain
A1D11_RS14895	SM00318	Staphylococcal nuclease homologues
A1D11_RS14900	SM00091	PAS domain
A1D11_RS14900	SM00138	Methyltransferase, chemotaxis proteins 
A1D11_RS14900	SM00387	Histidine kinase-like ATPases
A1D11_RS14900	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS14930	SM00267	diguanylate cyclase
A1D11_RS14940	SM00357	Cold shock protein domain
A1D11_RS14950	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS14955	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS14960	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS14990	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS15000	SM00763	PrkA AAA domain
A1D11_RS15030	SM00567	E-Z type HEAT repeats
A1D11_RS15045	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS15070	SM00062	Bacterial periplasmic substrate-binding proteins
A1D11_RS15075	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS15080	SM01060	A1D11_RS15080
A1D11_RS15245	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS15275	SM00478	endonuclease III
A1D11_RS15275	SM00525	A1D11_RS15275
A1D11_RS15305	SM00287	Bacterial SH3 domain homologues
A1D11_RS15375	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS15390	SM00829	Enoylreductase
A1D11_RS15425	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS15430	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS15485	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS15500	SM00861	Transketolase, pyrimidine binding domain
A1D11_RS15530	SM00478	endonuclease III
A1D11_RS15595	SM00226	Low molecular weight phosphatase family
A1D11_RS15625	SM00354	helix_turn _helix lactose operon repressor
A1D11_RS15645	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS15645	SM00866	A1D11_RS15645
A1D11_RS15650	SM00642	Alpha-amylase domain
A1D11_RS15705	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS15720	SM00448	cheY-homologous receiver domain
A1D11_RS15725	SM00387	Histidine kinase-like ATPases
A1D11_RS15755	SM00656	A1D11_RS15755
A1D11_RS15785	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS15790	SM00829	Enoylreductase
A1D11_RS15795	SM00028	Tetratricopeptide repeats
A1D11_RS15800	SM00487	DEAD-like helicases superfamily
A1D11_RS15800	SM00490	helicase superfamily c-terminal domain
A1D11_RS15805	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS15820	SM00422	helix_turn_helix, mercury resistance
A1D11_RS15825	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS15835	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A1D11_RS15890	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS16005	SM00342	helix_turn_helix, arabinose operon control protein
A1D11_RS16030	SM00342	helix_turn_helix, arabinose operon control protein
A1D11_RS16030	SM00448	cheY-homologous receiver domain
A1D11_RS16035	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS16035	SM00387	Histidine kinase-like ATPases
A1D11_RS16075	SM00028	Tetratricopeptide repeats
A1D11_RS16105	SM00028	Tetratricopeptide repeats
A1D11_RS16130	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS16145	SM00825	Beta-ketoacyl synthase
A1D11_RS16165	SM00421	helix_turn_helix, Lux Regulon
A1D11_RS16165	SM00448	cheY-homologous receiver domain
A1D11_RS16175	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A1D11_RS16190	SM00845	GatB domain
A1D11_RS16225	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A1D11_RS16225	SM00292	breast cancer carboxy-terminal domain
A1D11_RS16225	SM00532	Ligase N family
A1D11_RS16270	SM00344	helix_turn_helix ASNC type
A1D11_RS16275	SM01209	A1D11_RS16275
A1D11_RS16275	SM01210	A1D11_RS16275
A1D11_RS16280	SM00798	AICARFT/IMPCHase bienzyme
A1D11_RS16280	SM00851	MGS-like domain
A1D11_RS16305	SM01211	A1D11_RS16305
A1D11_RS16320	SM00998	Adenylosuccinate lyase C-terminus
A1D11_RS16330	SM01001	AIR carboxylase
A1D11_RS16370	SM00460	Transglutaminase/protease-like homologues
A1D11_RS16430	SM00829	Enoylreductase
A1D11_RS16440	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS16495	SM00829	Enoylreductase
A1D11_RS16500	SM00028	Tetratricopeptide repeats
A1D11_RS16500	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS16505	SM00421	helix_turn_helix, Lux Regulon
A1D11_RS16520	SM00387	Histidine kinase-like ATPases
A1D11_RS16520	SM00421	helix_turn_helix, Lux Regulon
A1D11_RS16520	SM00448	cheY-homologous receiver domain
A1D11_RS16530	SM00883	Chaperonin 10 Kd subunit
A1D11_RS16555	SM00881	CoA binding domain
A1D11_RS16565	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS16655	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS16655	SM00895	A1D11_RS16655
A1D11_RS16670	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS16680	SM00710	Parallel beta-helix repeats
A1D11_RS16690	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS16705	SM00098	Alkaline phosphatase homologues
A1D11_RS16725	SM00257	Lysin motif
A1D11_RS16725	SM00636	A1D11_RS16725
A1D11_RS16765	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS16775	SM00344	helix_turn_helix ASNC type
A1D11_RS16790	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS16820	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS16840	SM00226	Low molecular weight phosphatase family
A1D11_RS16850	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A1D11_RS16865	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS16885	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS16900	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS16925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS16925	SM00895	A1D11_RS16925
A1D11_RS16930	SM01058	CarD-like/TRCF domain
A1D11_RS16935	SM00357	Cold shock protein domain
A1D11_RS16950	SM00028	Tetratricopeptide repeats
A1D11_RS17075	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS17125	SM00731	SprT homologues.
A1D11_RS17130	SM00316	Ribosomal protein S1-like RNA-binding domain
A1D11_RS17130	SM00732	Likely ribonuclease with RNase H fold.
A1D11_RS17135	SM00331	Sigma factor PP2C-like phosphatases
A1D11_RS17135	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A1D11_RS17155	SM00331	Sigma factor PP2C-like phosphatases
A1D11_RS17160	SM00387	Histidine kinase-like ATPases
A1D11_RS17185	SM01005	Alanine racemase, C-terminal domain
A1D11_RS17215	SM00487	DEAD-like helicases superfamily
A1D11_RS17215	SM00490	helicase superfamily c-terminal domain
A1D11_RS17265	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS17280	SM00448	cheY-homologous receiver domain
A1D11_RS17285	SM00091	PAS domain
A1D11_RS17285	SM00387	Histidine kinase-like ATPases
A1D11_RS17370	SM00267	diguanylate cyclase
A1D11_RS17380	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A1D11_RS17380	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A1D11_RS17380	SM00493	A1D11_RS17380
A1D11_RS17385	SM00344	helix_turn_helix ASNC type
A1D11_RS17390	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS17470	SM00346	helix_turn_helix isocitrate lyase regulation
A1D11_RS17475	SM00797	Allophanate hydrolase subunit 2
A1D11_RS17480	SM00796	Allophanate hydrolase subunit 1
A1D11_RS17540	SM00420	helix_turn_helix, Deoxyribose operon repressor
A1D11_RS17575	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS17580	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A1D11_RS17595	SM00028	Tetratricopeptide repeats
A1D11_RS17615	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS17640	SM00028	Tetratricopeptide repeats
A1D11_RS17655	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS17665	SM00062	Bacterial periplasmic substrate-binding proteins
A1D11_RS17700	SM00710	Parallel beta-helix repeats
A1D11_RS17740	SM00062	Bacterial periplasmic substrate-binding proteins
A1D11_RS17750	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS17765	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS17780	SM00824	Thioesterase
A1D11_RS17785	SM00823	Phosphopantetheine attachment site
A1D11_RS17785	SM00824	Thioesterase
A1D11_RS17790	SM00823	Phosphopantetheine attachment site
A1D11_RS17790	SM01294	A1D11_RS17790
A1D11_RS17795	SM00823	Phosphopantetheine attachment site
A1D11_RS17795	SM01294	A1D11_RS17795
A1D11_RS17805	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A1D11_RS17815	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A1D11_RS17815	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS17835	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS17845	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS17865	SM00062	Bacterial periplasmic substrate-binding proteins
A1D11_RS17875	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A1D11_RS17900	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A1D11_RS17940	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS18030	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS18075	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS18075	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS18145	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS18155	SM00642	Alpha-amylase domain
A1D11_RS18165	SM00028	Tetratricopeptide repeats
A1D11_RS18250	SM00093	SERine  Proteinase INhibitors
A1D11_RS18270	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS18275	SM00387	Histidine kinase-like ATPases
A1D11_RS18275	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS18280	SM00448	cheY-homologous receiver domain
A1D11_RS18280	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS18300	SM00858	A1D11_RS18300
A1D11_RS18305	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS18305	SM00895	A1D11_RS18305
A1D11_RS18310	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A1D11_RS18325	SM01130	A1D11_RS18325
A1D11_RS18330	SM00448	cheY-homologous receiver domain
A1D11_RS18335	SM00387	Histidine kinase-like ATPases
A1D11_RS18370	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS18370	SM00866	A1D11_RS18370
A1D11_RS18390	SM00450	Rhodanese Homology Domain
A1D11_RS18395	SM00342	helix_turn_helix, arabinose operon control protein
A1D11_RS18415	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A1D11_RS18510	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS18565	SM00347	helix_turn_helix multiple antibiotic resistance protein
A1D11_RS18600	SM00422	helix_turn_helix, mercury resistance
A1D11_RS18600	SM00871	Bacterial transcription activator, effector binding domain
A1D11_RS18620	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A1D11_RS18745	SM00342	helix_turn_helix, arabinose operon control protein
A1D11_RS18830	SM01251	A1D11_RS18830
A1D11_RS18845	SM00646	A1D11_RS18845
A1D11_RS18880	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS18885	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS18895	SM00662	RNA polymerases D
A1D11_RS18915	SM00316	Ribosomal protein S1-like RNA-binding domain
A1D11_RS18975	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A1D11_RS18980	SM01374	A1D11_RS18980
A1D11_RS19000	SM00322	K homology RNA-binding domain
A1D11_RS19015	SM01382	A1D11_RS19015
A1D11_RS19015	SM01383	A1D11_RS19015
A1D11_RS19035	SM01403	A1D11_RS19035
A1D11_RS19050	SM00838	Elongation factor G C-terminus
A1D11_RS19050	SM00889	Elongation factor G, domain IV
A1D11_RS19070	SM00663	RNA polymerase I subunit A N-terminus
A1D11_RS19100	SM00649	Ribosomal protein L11/L12
A1D11_RS19105	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A1D11_RS19105	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A1D11_RS19130	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A1D11_RS19135	SM00535	Ribonuclease III family
A1D11_RS19140	SM00840	A1D11_RS19140
A1D11_RS19165	SM00670	Large family of predicted nucleotide-binding domains
A1D11_RS19175	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS19180	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS19180	SM01086	C-terminal, D2-small domain, of ClpB protein
A1D11_RS19285	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS19295	SM00905	Dihydroneopterin aldolase
A1D11_RS19340	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS19350	SM00977	TilS substrate C-terminal domain
A1D11_RS19355	SM00220	Serine/Threonine protein kinases, catalytic domain
A1D11_RS19365	SM00331	Sigma factor PP2C-like phosphatases
A1D11_RS19365	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A1D11_RS19380	SM00316	Ribosomal protein S1-like RNA-binding domain
A1D11_RS19400	SM00363	S4 RNA-binding domain
A1D11_RS19415	SM00966	SpoVT / AbrB like domain 
A1D11_RS19420	SM00487	DEAD-like helicases superfamily
A1D11_RS19420	SM00490	helicase superfamily c-terminal domain
A1D11_RS19420	SM00982	A1D11_RS19420
A1D11_RS19420	SM01058	CarD-like/TRCF domain
A1D11_RS19440	SM01400	A1D11_RS19440
A1D11_RS19485	SM00650	Ribosomal RNA adenine dimethylases
A1D11_RS19490	SM00493	A1D11_RS19490
A1D11_RS19495	SM01208	A1D11_RS19495
A1D11_RS19510	SM00966	SpoVT / AbrB like domain 
A1D11_RS19520	SM00465	GIY-YIG type nucleases (URI domain)
A1D11_RS19615	SM00493	A1D11_RS19615
A1D11_RS19625	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS19645	SM00257	Lysin motif
A1D11_RS19645	SM00636	A1D11_RS19645
A1D11_RS19680	SM00936	Penicillin-binding protein 5, C-terminal domain 
A1D11_RS19685	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1D11_RS19685	SM01240	A1D11_RS19685
A1D11_RS19720	SM00434	DNA Topoisomerase IV
A1D11_RS19725	SM00387	Histidine kinase-like ATPases
A1D11_RS19725	SM00433	TopoisomeraseII
A1D11_RS19745	SM00480	DNA polymerase III beta subunit
A1D11_RS19750	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS19750	SM00760	Bacterial dnaA protein helix-turn-helix domain
A1D11_RS19770	SM00393	Putative single-stranded nucleic acids-binding domain
A1D11_RS19770	SM01245	A1D11_RS19770
A1D11_RS19780	SM01228	A1D11_RS19780
A1D11_RS19790	SM00470	ParB-like nuclease domain
A1D11_RS19805	SM00470	ParB-like nuclease domain
A1D11_RS19825	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A1D11_RS19855	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS19855	SM00895	A1D11_RS19855
A1D11_RS19870	SM00342	helix_turn_helix, arabinose operon control protein
A1D11_RS19880	SM00354	helix_turn _helix lactose operon repressor
A1D11_RS19900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS19910	SM01130	A1D11_RS19910
A1D11_RS19915	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A1D11_RS19915	SM00450	Rhodanese Homology Domain
A1D11_RS19935	SM00387	Histidine kinase-like ATPases
A1D11_RS19935	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS19940	SM00448	cheY-homologous receiver domain
A1D11_RS19940	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS19950	SM00422	helix_turn_helix, mercury resistance
A1D11_RS19955	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS19955	SM00895	A1D11_RS19955
A1D11_RS19960	SM01329	A1D11_RS19960
A1D11_RS19985	SM01131	A1D11_RS19985
A1D11_RS20005	SM00267	diguanylate cyclase
A1D11_RS20035	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS20045	SM00788	Adenylosuccinate synthetase
A1D11_RS20070	SM00448	cheY-homologous receiver domain
A1D11_RS20070	SM00862	Transcriptional regulatory protein, C terminal
A1D11_RS20075	SM00091	PAS domain
A1D11_RS20075	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1D11_RS20075	SM00387	Histidine kinase-like ATPases
A1D11_RS20075	SM00388	His Kinase A (phosphoacceptor) domain
A1D11_RS20090	SM00849	Metallo-beta-lactamase superfamily
A1D11_RS20095	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1D11_RS20115	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS20120	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
A1D11_RS20125	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS20130	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A1D11_RS20210	SM00885	D5 N terminal like
A1D11_RS20215	SM00857	Resolvase, N terminal domain
A1D11_RS20220	SM00857	Resolvase, N terminal domain
A1D11_RS20265	SM00530	Helix-turn-helix XRE-family like proteins 
A1D11_RS20280	SM00382	ATPases associated with a variety of cellular activities
A1D11_RS20315	SM01350	A1D11_RS20315
A1D11_RS20330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A1D11_RS20330	SM00895	A1D11_RS20330
A1D11_RS20405	SM00387	Histidine kinase-like ATPases
A1D11_RS20435	SM00420	helix_turn_helix, Deoxyribose operon repressor
A1D11_RS20435	SM01134	A1D11_RS20435
A1D11_RS20500	SM00448	cheY-homologous receiver domain
A1D11_RS20500	SM00862	Transcriptional regulatory protein, C terminal
