SD85_RS00005 SM00382 ATPases associated with a variety of cellular activities SD85_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain SD85_RS00010 SM00480 DNA polymerase III beta subunit SD85_RS00030 SM00387 Histidine kinase-like ATPases SD85_RS00030 SM00433 TopoisomeraseII SD85_RS00035 SM00434 DNA Topoisomerase IV SD85_RS00070 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS00070 SM01240 SD85_RS00070 SD85_RS00075 SM00936 Penicillin-binding protein 5, C-terminal domain SD85_RS00110 SM00257 Lysin motif SD85_RS00110 SM00636 SD85_RS00110 SD85_RS00125 SM00382 ATPases associated with a variety of cellular activities SD85_RS00135 SM00493 SD85_RS00135 SD85_RS00230 SM00465 GIY-YIG type nucleases (URI domain) SD85_RS00240 SM00966 SpoVT / AbrB like domain SD85_RS00255 SM01208 SD85_RS00255 SD85_RS00260 SM00493 SD85_RS00260 SD85_RS00265 SM00650 Ribosomal RNA adenine dimethylases SD85_RS00315 SM01400 SD85_RS00315 SD85_RS00335 SM00487 DEAD-like helicases superfamily SD85_RS00335 SM00490 helicase superfamily c-terminal domain SD85_RS00335 SM00982 SD85_RS00335 SD85_RS00335 SM01058 CarD-like/TRCF domain SD85_RS00340 SM00966 SpoVT / AbrB like domain SD85_RS00355 SM00363 S4 RNA-binding domain SD85_RS00375 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_RS00390 SM00331 Sigma factor PP2C-like phosphatases SD85_RS00390 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SD85_RS00400 SM00220 Serine/Threonine protein kinases, catalytic domain SD85_RS00405 SM00977 TilS substrate C-terminal domain SD85_RS00415 SM00382 ATPases associated with a variety of cellular activities SD85_RS00460 SM00905 Dihydroneopterin aldolase SD85_RS00470 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS00520 SM00382 ATPases associated with a variety of cellular activities SD85_RS00520 SM01086 C-terminal, D2-small domain, of ClpB protein SD85_RS00525 SM00382 ATPases associated with a variety of cellular activities SD85_RS00535 SM00670 Large family of predicted nucleotide-binding domains SD85_RS00565 SM00840 SD85_RS00565 SD85_RS00570 SM00535 Ribonuclease III family SD85_RS00575 SM00967 RNA 2'-O ribose methyltransferase substrate binding SD85_RS00600 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SD85_RS00600 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SD85_RS00605 SM00649 Ribosomal protein L11/L12 SD85_RS00635 SM00663 RNA polymerase I subunit A N-terminus SD85_RS00655 SM00838 Elongation factor G C-terminus SD85_RS00655 SM00889 Elongation factor G, domain IV SD85_RS00670 SM01403 SD85_RS00670 SD85_RS00690 SM01382 SD85_RS00690 SD85_RS00690 SM01383 SD85_RS00690 SD85_RS00705 SM00322 K homology RNA-binding domain SD85_RS00725 SM01374 SD85_RS00725 SD85_RS00730 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SD85_RS00795 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_RS00815 SM00662 RNA polymerases D SD85_RS00825 SM00382 ATPases associated with a variety of cellular activities SD85_RS00830 SM00382 ATPases associated with a variety of cellular activities SD85_RS00870 SM00646 SD85_RS00870 SD85_RS00885 SM01251 SD85_RS00885 SD85_RS00990 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS01120 SM00448 cheY-homologous receiver domain SD85_RS01120 SM00862 Transcriptional regulatory protein, C terminal SD85_RS01125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS01125 SM00387 Histidine kinase-like ATPases SD85_RS01125 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS01270 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS01295 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS01345 SM00450 Rhodanese Homology Domain SD85_RS01365 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS01365 SM00866 SD85_RS01365 SD85_RS01405 SM00387 Histidine kinase-like ATPases SD85_RS01410 SM00448 cheY-homologous receiver domain SD85_RS01415 SM01130 SD85_RS01415 SD85_RS01430 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SD85_RS01435 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS01435 SM00895 SD85_RS01435 SD85_RS01440 SM00858 SD85_RS01440 SD85_RS01455 SM00448 cheY-homologous receiver domain SD85_RS01455 SM00862 Transcriptional regulatory protein, C terminal SD85_RS01460 SM00387 Histidine kinase-like ATPases SD85_RS01460 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS01465 SM00382 ATPases associated with a variety of cellular activities SD85_RS01480 SM00093 SERine Proteinase INhibitors SD85_RS01490 SM00327 von Willebrand factor (vWF) type A domain SD85_RS01600 SM00028 Tetratricopeptide repeats SD85_RS01610 SM00642 Alpha-amylase domain SD85_RS01620 SM00382 ATPases associated with a variety of cellular activities SD85_RS01675 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS01675 SM00382 ATPases associated with a variety of cellular activities SD85_RS01710 SM00632 SD85_RS01710 SD85_RS01710 SM00642 Alpha-amylase domain SD85_RS01730 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS01845 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_RS01875 SM00833 Cobalamin synthesis protein cobW C-terminal domain SD85_RS01885 SM00062 Bacterial periplasmic substrate-binding proteins SD85_RS01905 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS01915 SM00382 ATPases associated with a variety of cellular activities SD85_RS01935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_RS01935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS01945 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SD85_RS01960 SM00823 Phosphopantetheine attachment site SD85_RS01965 SM00823 Phosphopantetheine attachment site SD85_RS01970 SM00823 Phosphopantetheine attachment site SD85_RS01995 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS02010 SM00382 ATPases associated with a variety of cellular activities SD85_RS02020 SM00062 Bacterial periplasmic substrate-binding proteins SD85_RS02060 SM00710 Parallel beta-helix repeats SD85_RS02060 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses SD85_RS02085 SM00382 ATPases associated with a variety of cellular activities SD85_RS02095 SM00448 cheY-homologous receiver domain SD85_RS02095 SM00862 Transcriptional regulatory protein, C terminal SD85_RS02100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS02100 SM00387 Histidine kinase-like ATPases SD85_RS02100 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS02105 SM00028 Tetratricopeptide repeats SD85_RS02135 SM00382 ATPases associated with a variety of cellular activities SD85_RS02165 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_RS02170 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS02205 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_RS02230 SM01329 SD85_RS02230 SD85_RS02275 SM00796 Allophanate hydrolase subunit 1 SD85_RS02280 SM00797 Allophanate hydrolase subunit 2 SD85_RS02285 SM00346 helix_turn_helix isocitrate lyase regulation SD85_RS02360 SM00344 helix_turn_helix ASNC type SD85_RS02365 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SD85_RS02365 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SD85_RS02365 SM00493 SD85_RS02365 SD85_RS02375 SM00267 diguanylate cyclase SD85_RS02460 SM00091 PAS domain SD85_RS02460 SM00387 Histidine kinase-like ATPases SD85_RS02465 SM00448 cheY-homologous receiver domain SD85_RS02485 SM00382 ATPases associated with a variety of cellular activities SD85_RS02535 SM00487 DEAD-like helicases superfamily SD85_RS02535 SM00490 helicase superfamily c-terminal domain SD85_RS02565 SM01005 Alanine racemase, C-terminal domain SD85_RS02590 SM00387 Histidine kinase-like ATPases SD85_RS02595 SM00331 Sigma factor PP2C-like phosphatases SD85_RS02615 SM00331 Sigma factor PP2C-like phosphatases SD85_RS02615 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SD85_RS02620 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_RS02620 SM00732 Likely ribonuclease with RNase H fold. SD85_RS02630 SM00731 SprT homologues. SD85_RS02675 SM00422 helix_turn_helix, mercury resistance SD85_RS02690 SM00822 SD85_RS02690 SD85_RS02705 SM00822 SD85_RS02705 SD85_RS02715 SM00357 Cold shock protein domain SD85_RS02720 SM01058 CarD-like/TRCF domain SD85_RS02730 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS02735 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS02735 SM00871 Bacterial transcription activator, effector binding domain SD85_RS02760 SM00849 Metallo-beta-lactamase superfamily SD85_RS02765 SM00344 helix_turn_helix ASNC type SD85_RS02775 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS02805 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_RS02815 SM00226 Low molecular weight phosphatase family SD85_RS02830 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS02840 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_RS02860 SM00387 Histidine kinase-like ATPases SD85_RS02865 SM00421 helix_turn_helix, Lux Regulon SD85_RS02865 SM00448 cheY-homologous receiver domain SD85_RS02900 SM00422 helix_turn_helix, mercury resistance SD85_RS02900 SM00871 Bacterial transcription activator, effector binding domain SD85_RS02930 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS02995 SM00354 helix_turn _helix lactose operon repressor SD85_RS03030 SM00382 ATPases associated with a variety of cellular activities SD85_RS03045 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS03060 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS03060 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_RS03065 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS03090 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS03090 SM00895 SD85_RS03090 SD85_RS03095 SM00257 Lysin motif SD85_RS03095 SM00636 SD85_RS03095 SD85_RS03115 SM00098 Alkaline phosphatase homologues SD85_RS03130 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_RS03165 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS03165 SM00866 SD85_RS03165 SD85_RS03250 SM00382 ATPases associated with a variety of cellular activities SD85_RS03260 SM00881 CoA binding domain SD85_RS03285 SM00883 Chaperonin 10 Kd subunit SD85_RS03300 SM00028 Tetratricopeptide repeats SD85_RS03300 SM00382 ATPases associated with a variety of cellular activities SD85_RS03305 SM00829 Enoylreductase SD85_RS03350 SM00829 Enoylreductase SD85_RS03425 SM00460 Transglutaminase/protease-like homologues SD85_RS03460 SM01001 AIR carboxylase SD85_RS03470 SM00998 Adenylosuccinate lyase C-terminus SD85_RS03485 SM01211 SD85_RS03485 SD85_RS03510 SM00798 AICARFT/IMPCHase bienzyme SD85_RS03510 SM00851 MGS-like domain SD85_RS03515 SM01209 SD85_RS03515 SD85_RS03515 SM01210 SD85_RS03515 SD85_RS03520 SM00344 helix_turn_helix ASNC type SD85_RS03565 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SD85_RS03565 SM00292 breast cancer carboxy-terminal domain SD85_RS03565 SM00532 Ligase N family SD85_RS03605 SM00845 GatB domain SD85_RS03620 SM00046 Diacylglycerol kinase catalytic domain (presumed) SD85_RS03640 SM00487 DEAD-like helicases superfamily SD85_RS03670 SM00028 Tetratricopeptide repeats SD85_RS03745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS03745 SM00387 Histidine kinase-like ATPases SD85_RS03750 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS03750 SM00448 cheY-homologous receiver domain SD85_RS03775 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS03875 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS03945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_RS03950 SM00382 ATPases associated with a variety of cellular activities SD85_RS03960 SM00422 helix_turn_helix, mercury resistance SD85_RS03980 SM00382 ATPases associated with a variety of cellular activities SD85_RS03985 SM00487 DEAD-like helicases superfamily SD85_RS03985 SM00490 helicase superfamily c-terminal domain SD85_RS03995 SM00829 Enoylreductase SD85_RS04000 SM00382 ATPases associated with a variety of cellular activities SD85_RS04030 SM00656 SD85_RS04030 SD85_RS04040 SM00387 Histidine kinase-like ATPases SD85_RS04045 SM00448 cheY-homologous receiver domain SD85_RS04060 SM00849 Metallo-beta-lactamase superfamily SD85_RS04145 SM00642 Alpha-amylase domain SD85_RS04150 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS04150 SM00866 SD85_RS04150 SD85_RS04180 SM00226 Low molecular weight phosphatase family SD85_RS04250 SM00478 endonuclease III SD85_RS04290 SM00861 Transketolase, pyrimidine binding domain SD85_RS04305 SM00382 ATPases associated with a variety of cellular activities SD85_RS04355 SM00382 ATPases associated with a variety of cellular activities SD85_RS04360 SM00382 ATPases associated with a variety of cellular activities SD85_RS04375 SM00387 Histidine kinase-like ATPases SD85_RS04380 SM00421 helix_turn_helix, Lux Regulon SD85_RS04380 SM00448 cheY-homologous receiver domain SD85_RS04385 SM00382 ATPases associated with a variety of cellular activities SD85_RS04430 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS04510 SM00287 Bacterial SH3 domain homologues SD85_RS04540 SM00478 endonuclease III SD85_RS04540 SM00525 SD85_RS04540 SD85_RS04570 SM00382 ATPases associated with a variety of cellular activities SD85_RS04740 SM01060 SD85_RS04740 SD85_RS04745 SM00382 ATPases associated with a variety of cellular activities SD85_RS04750 SM00062 Bacterial periplasmic substrate-binding proteins SD85_RS04780 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS04795 SM00567 E-Z type HEAT repeats SD85_RS04825 SM00763 PrkA AAA domain SD85_RS04835 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS04865 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS04870 SM00382 ATPases associated with a variety of cellular activities SD85_RS04875 SM00382 ATPases associated with a variety of cellular activities SD85_RS04885 SM00357 Cold shock protein domain SD85_RS04895 SM00267 diguanylate cyclase SD85_RS04925 SM00318 Staphylococcal nuclease homologues SD85_RS04935 SM00363 S4 RNA-binding domain SD85_RS04945 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS04995 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SD85_RS04995 SM00387 Histidine kinase-like ATPases SD85_RS05000 SM00421 helix_turn_helix, Lux Regulon SD85_RS05000 SM00448 cheY-homologous receiver domain SD85_RS05020 SM00257 Lysin motif SD85_RS05040 SM00098 Alkaline phosphatase homologues SD85_RS05045 SM00257 Lysin motif SD85_RS05075 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS05105 SM00563 Phosphate acyltransferases SD85_RS05120 SM01091 Transporter associated domain SD85_RS05125 SM00422 helix_turn_helix, mercury resistance SD85_RS05135 SM01091 Transporter associated domain SD85_RS05195 SM00382 ATPases associated with a variety of cellular activities SD85_RS05200 SM00382 ATPases associated with a variety of cellular activities SD85_RS05255 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_RS05285 SM00382 ATPases associated with a variety of cellular activities SD85_RS05305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_RS05340 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS05370 SM00382 ATPases associated with a variety of cellular activities SD85_RS05455 SM01022 SD85_RS05455 SD85_RS05470 SM00849 Metallo-beta-lactamase superfamily SD85_RS05510 SM00829 Enoylreductase SD85_RS05520 SM00855 Phosphoglycerate mutase family SD85_RS05540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_RS05555 SM00914 SD85_RS05555 SD85_RS05570 SM00894 Excalibur calcium-binding domain SD85_RS05605 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS05635 SM00354 helix_turn _helix lactose operon repressor SD85_RS05770 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS05775 SM00354 helix_turn _helix lactose operon repressor SD85_RS05795 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS05840 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SD85_RS05870 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_RS05935 SM00859 Semialdehyde dehydrogenase, NAD binding domain SD85_RS05955 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SD85_RS05960 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SD85_RS06010 SM00825 Beta-ketoacyl synthase SD85_RS06020 SM00382 ATPases associated with a variety of cellular activities SD85_RS06025 SM00382 ATPases associated with a variety of cellular activities SD85_RS06070 SM00382 ATPases associated with a variety of cellular activities SD85_RS06075 SM00382 ATPases associated with a variety of cellular activities SD85_RS06140 SM01118 SD85_RS06140 SD85_RS06150 SM00954 Region found in RelA / SpoT proteins SD85_RS06320 SM00644 SD85_RS06320 SD85_RS06335 SM00028 Tetratricopeptide repeats SD85_RS06455 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_RS06455 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SD85_RS06505 SM00382 ATPases associated with a variety of cellular activities SD85_RS06515 SM00835 Cupin SD85_RS06545 SM00829 Enoylreductase SD85_RS06565 SM00354 helix_turn _helix lactose operon repressor SD85_RS06575 SM00858 SD85_RS06575 SD85_RS06590 SM00382 ATPases associated with a variety of cellular activities SD85_RS06595 SM00028 Tetratricopeptide repeats SD85_RS06610 SM00257 Lysin motif SD85_RS06610 SM00644 SD85_RS06610 SD85_RS06635 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS06650 SM00382 ATPases associated with a variety of cellular activities SD85_RS06755 SM00257 Lysin motif SD85_RS06820 SM00257 Lysin motif SD85_RS06820 SM00644 SD85_RS06820 SD85_RS06870 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_RS06895 SM00382 ATPases associated with a variety of cellular activities SD85_RS06910 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SD85_RS06920 SM00382 ATPases associated with a variety of cellular activities SD85_RS06980 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SD85_RS06995 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS07005 SM00028 Tetratricopeptide repeats SD85_RS07015 SM00855 Phosphoglycerate mutase family SD85_RS07040 SM00382 ATPases associated with a variety of cellular activities SD85_RS07055 SM00448 cheY-homologous receiver domain SD85_RS07055 SM00862 Transcriptional regulatory protein, C terminal SD85_RS07060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS07060 SM00387 Histidine kinase-like ATPases SD85_RS07060 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS07085 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS07085 SM00924 MgtE intracellular N domain SD85_RS07090 SM00422 helix_turn_helix, mercury resistance SD85_RS07105 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS07140 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen SD85_RS07145 SM00052 Putative diguanylate phosphodiesterase SD85_RS07145 SM00267 diguanylate cyclase SD85_RS07205 SM00091 PAS domain SD85_RS07205 SM00387 Histidine kinase-like ATPases SD85_RS07205 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS07250 SM01007 Class II Aldolase and Adducin N-terminal domain SD85_RS07275 SM00387 Histidine kinase-like ATPases SD85_RS07275 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS07280 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS07295 SM00382 ATPases associated with a variety of cellular activities SD85_RS07295 SM01086 C-terminal, D2-small domain, of ClpB protein SD85_RS07385 SM00354 helix_turn _helix lactose operon repressor SD85_RS07390 SM01061 CAT RNA binding domain SD85_RS07425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_RS07425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS07445 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SD85_RS07445 SM00091 PAS domain SD85_RS07445 SM00387 Histidine kinase-like ATPases SD85_RS07445 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS07460 SM00260 Two component signalling adaptor domain SD85_RS07460 SM00448 cheY-homologous receiver domain SD85_RS07475 SM00257 Lysin motif SD85_RS07490 SM00052 Putative diguanylate phosphodiesterase SD85_RS07590 SM00852 Probable molybdopterin binding domain SD85_RS07610 SM00382 ATPases associated with a variety of cellular activities SD85_RS07615 SM00382 ATPases associated with a variety of cellular activities SD85_RS07630 SM00382 ATPases associated with a variety of cellular activities SD85_RS07635 SM01066 Carbohydrate binding domain SD85_RS07640 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_RS07640 SM01134 SD85_RS07640 SD85_RS07675 SM00382 ATPases associated with a variety of cellular activities SD85_RS07700 SM00966 SpoVT / AbrB like domain SD85_RS07705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SD85_RS07705 SM00091 PAS domain SD85_RS07705 SM00387 Histidine kinase-like ATPases SD85_RS07705 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS07725 SM00849 Metallo-beta-lactamase superfamily SD85_RS07760 SM00861 Transketolase, pyrimidine binding domain SD85_RS07860 SM00838 Elongation factor G C-terminus SD85_RS07880 SM00670 Large family of predicted nucleotide-binding domains SD85_RS07905 SM00878 Biotin carboxylase C-terminal domain SD85_RS07950 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS08000 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_RS08055 SM00740 SD85_RS08055 SD85_RS08065 SM00740 SD85_RS08065 SD85_RS08130 SM00842 Cell division protein FtsA SD85_RS08135 SM00864 Tubulin/FtsZ family, GTPase domain SD85_RS08135 SM00865 Tubulin/FtsZ family, C-terminal domain SD85_RS08160 SM00382 ATPases associated with a variety of cellular activities SD85_RS08195 SM00363 S4 RNA-binding domain SD85_RS08220 SM00363 S4 RNA-binding domain SD85_RS08245 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SD85_RS08250 SM00851 MGS-like domain SD85_RS08250 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SD85_RS08250 SM01209 SD85_RS08250 SD85_RS08265 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SD85_RS08320 SM00831 Cation transporter/ATPase, N-terminus SD85_RS08335 SM00072 Guanylate kinase homologues. SD85_RS08340 SM01409 SD85_RS08340 SD85_RS08350 SM00487 DEAD-like helicases superfamily SD85_RS08350 SM00490 helicase superfamily c-terminal domain SD85_RS08375 SM00331 Sigma factor PP2C-like phosphatases SD85_RS08375 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SD85_RS08380 SM00220 Serine/Threonine protein kinases, catalytic domain SD85_RS08380 SM00740 SD85_RS08380 SD85_RS08395 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SD85_RS08415 SM01120 SD85_RS08415 SD85_RS08415 SM01121 SD85_RS08415 SD85_RS08430 SM00487 DEAD-like helicases superfamily SD85_RS08430 SM00490 helicase superfamily c-terminal domain SD85_RS08445 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD85_RS08450 SM00822 SD85_RS08450 SD85_RS08460 SM00358 Double-stranded RNA binding motif SD85_RS08460 SM00535 Ribonuclease III family SD85_RS08465 SM00968 SMC proteins Flexible Hinge Domain SD85_RS08470 SM00382 ATPases associated with a variety of cellular activities SD85_RS08470 SM00962 SRP54-type protein, GTPase domain SD85_RS08470 SM00963 SRP54-type protein, helical bundle domain SD85_RS08495 SM00382 ATPases associated with a variety of cellular activities SD85_RS08495 SM00962 SRP54-type protein, GTPase domain SD85_RS08495 SM00963 SRP54-type protein, helical bundle domain SD85_RS08555 SM00881 CoA binding domain SD85_RS08565 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SD85_RS08565 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SD85_RS08565 SM00493 SD85_RS08565 SD85_RS08625 SM00382 ATPases associated with a variety of cellular activities SD85_RS08675 SM00448 cheY-homologous receiver domain SD85_RS08710 SM00962 SRP54-type protein, GTPase domain SD85_RS08720 SM00448 cheY-homologous receiver domain SD85_RS08725 SM00073 Histidine Phosphotransfer domain SD85_RS08725 SM00260 Two component signalling adaptor domain SD85_RS08725 SM00387 Histidine kinase-like ATPases SD85_RS08725 SM01231 SD85_RS08725 SD85_RS08730 SM00260 Two component signalling adaptor domain SD85_RS08790 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_RS08800 SM00479 SD85_RS08800 SD85_RS08800 SM00481 DNA polymerase alpha chain like domain SD85_RS08810 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_RS08810 SM00322 K homology RNA-binding domain SD85_RS08845 SM00904 Riboflavin kinase SD85_RS08850 SM01387 SD85_RS08850 SD85_RS08855 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_RS08855 SM00322 K homology RNA-binding domain SD85_RS08885 SM00859 Semialdehyde dehydrogenase, NAD binding domain SD85_RS08895 SM01130 SD85_RS08895 SD85_RS08900 SM00849 Metallo-beta-lactamase superfamily SD85_RS08915 SM00382 ATPases associated with a variety of cellular activities SD85_RS08915 SM00843 SD85_RS08915 SD85_RS08920 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS08920 SM00866 SD85_RS08920 SD85_RS08955 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS08965 SM00852 Probable molybdopterin binding domain SD85_RS08970 SM00382 ATPases associated with a variety of cellular activities SD85_RS08980 SM00322 K homology RNA-binding domain SD85_RS08980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_RS08995 SM00829 Enoylreductase SD85_RS09005 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_RS09020 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SD85_RS09020 SM00534 ATPase domain of DNA mismatch repair MUTS family SD85_RS09025 SM00853 MutL C terminal dimerisation domain SD85_RS09025 SM01340 SD85_RS09025 SD85_RS09055 SM00849 Metallo-beta-lactamase superfamily SD85_RS09065 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD85_RS09070 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD85_RS09075 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD85_RS09085 SM00825 Beta-ketoacyl synthase SD85_RS09105 SM00822 SD85_RS09105 SD85_RS09105 SM00823 Phosphopantetheine attachment site SD85_RS09105 SM00825 Beta-ketoacyl synthase SD85_RS09105 SM00826 SD85_RS09105 SD85_RS09105 SM01294 SD85_RS09105 SD85_RS09110 SM00822 SD85_RS09110 SD85_RS09110 SM00823 Phosphopantetheine attachment site SD85_RS09110 SM00825 Beta-ketoacyl synthase SD85_RS09110 SM00826 SD85_RS09110 SD85_RS09110 SM01294 SD85_RS09110 SD85_RS09115 SM00822 SD85_RS09115 SD85_RS09115 SM00823 Phosphopantetheine attachment site SD85_RS09115 SM00825 Beta-ketoacyl synthase SD85_RS09115 SM00826 SD85_RS09115 SD85_RS09115 SM01294 SD85_RS09115 SD85_RS09120 SM00822 SD85_RS09120 SD85_RS09120 SM00823 Phosphopantetheine attachment site SD85_RS09120 SM00825 Beta-ketoacyl synthase SD85_RS09120 SM00826 SD85_RS09120 SD85_RS09120 SM01294 SD85_RS09120 SD85_RS09125 SM00823 Phosphopantetheine attachment site SD85_RS09125 SM00825 Beta-ketoacyl synthase SD85_RS09125 SM01294 SD85_RS09125 SD85_RS09140 SM00849 Metallo-beta-lactamase superfamily SD85_RS09225 SM00646 SD85_RS09225 SD85_RS09235 SM00382 ATPases associated with a variety of cellular activities SD85_RS09255 SM00422 helix_turn_helix, mercury resistance SD85_RS09260 SM01230 SD85_RS09260 SD85_RS09265 SM00860 SMI1 / KNR4 family SD85_RS09315 SM01005 Alanine racemase, C-terminal domain SD85_RS09450 SM00257 Lysin motif SD85_RS09455 SM00857 Resolvase, N terminal domain SD85_RS09465 SM00861 Transketolase, pyrimidine binding domain SD85_RS09490 SM00448 cheY-homologous receiver domain SD85_RS09560 SM01207 SD85_RS09560 SD85_RS09565 SM00881 CoA binding domain SD85_RS09570 SM00387 Histidine kinase-like ATPases SD85_RS09570 SM00433 TopoisomeraseII SD85_RS09575 SM00434 DNA Topoisomerase IV SD85_RS09595 SM01067 Cellulose binding domain SD85_RS09660 SM00878 Biotin carboxylase C-terminal domain SD85_RS09695 SM00824 Thioesterase SD85_RS09700 SM00823 Phosphopantetheine attachment site SD85_RS09705 SM00823 Phosphopantetheine attachment site SD85_RS09705 SM00825 Beta-ketoacyl synthase SD85_RS09710 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD85_RS09750 SM00257 Lysin motif SD85_RS09750 SM00644 SD85_RS09750 SD85_RS09785 SM00047 Lysozyme subfamily 2 SD85_RS09970 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS09975 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS10035 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SD85_RS10055 SM00822 SD85_RS10055 SD85_RS10110 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_RS10140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_RS10140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS10160 SM00656 SD85_RS10160 SD85_RS10230 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS10320 SM00028 Tetratricopeptide repeats SD85_RS10375 SM00860 SMI1 / KNR4 family SD85_RS10390 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS10415 SM00871 Bacterial transcription activator, effector binding domain SD85_RS10430 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_RS10470 SM00421 helix_turn_helix, Lux Regulon SD85_RS10470 SM00448 cheY-homologous receiver domain SD85_RS10480 SM00257 Lysin motif SD85_RS10485 SM00341 Helicase and RNase D C-terminal SD85_RS10485 SM00487 DEAD-like helicases superfamily SD85_RS10485 SM00490 helicase superfamily c-terminal domain SD85_RS10485 SM00956 SD85_RS10485 SD85_RS10540 SM00861 Transketolase, pyrimidine binding domain SD85_RS10545 SM00327 von Willebrand factor (vWF) type A domain SD85_RS10550 SM00382 ATPases associated with a variety of cellular activities SD85_RS10560 SM00257 Lysin motif SD85_RS10650 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_RS10650 SM00245 tail specific protease SD85_RS10685 SM00014 Acid phosphatase homologues SD85_RS10730 SM00882 Coenzyme A transferase SD85_RS10735 SM00882 Coenzyme A transferase SD85_RS10800 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS10845 SM00382 ATPases associated with a variety of cellular activities SD85_RS10895 SM00567 E-Z type HEAT repeats SD85_RS10895 SM00932 Scaffold protein Nfu/NifU N terminal SD85_RS10900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_RS10920 SM00357 Cold shock protein domain SD85_RS10960 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SD85_RS10960 SM00475 5'-3' exonuclease SD85_RS11020 SM00354 helix_turn _helix lactose operon repressor SD85_RS11035 SM00491 SD85_RS11035 SD85_RS11045 SM00981 SD85_RS11045 SD85_RS11075 SM00487 DEAD-like helicases superfamily SD85_RS11075 SM00490 helicase superfamily c-terminal domain SD85_RS11135 SM00478 endonuclease III SD85_RS11135 SM00525 SD85_RS11135 SD85_RS11165 SM00479 SD85_RS11165 SD85_RS11165 SM00487 DEAD-like helicases superfamily SD85_RS11165 SM00491 SD85_RS11165 SD85_RS11205 SM00851 MGS-like domain SD85_RS11255 SM00914 SD85_RS11255 SD85_RS11260 SM00028 Tetratricopeptide repeats SD85_RS11325 SM00138 Methyltransferase, chemotaxis proteins SD85_RS11335 SM00562 SD85_RS11335 SD85_RS11365 SM00411 bacterial (prokaryotic) histone like domain SD85_RS11420 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_RS11460 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SD85_RS11480 SM00257 Lysin motif SD85_RS11490 SM00487 DEAD-like helicases superfamily SD85_RS11490 SM00490 helicase superfamily c-terminal domain SD85_RS11535 SM00091 PAS domain SD85_RS11535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS11535 SM00387 Histidine kinase-like ATPases SD85_RS11535 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS11540 SM00448 cheY-homologous receiver domain SD85_RS11540 SM00862 Transcriptional regulatory protein, C terminal SD85_RS11560 SM00363 S4 RNA-binding domain SD85_RS11575 SM00936 Penicillin-binding protein 5, C-terminal domain SD85_RS11705 SM00387 Histidine kinase-like ATPases SD85_RS11715 SM00936 Penicillin-binding protein 5, C-terminal domain SD85_RS11755 SM00919 Malic enzyme, NAD binding domain SD85_RS11755 SM01274 SD85_RS11755 SD85_RS11770 SM00870 SD85_RS11770 SD85_RS11775 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS11830 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS11910 SM00849 Metallo-beta-lactamase superfamily SD85_RS11960 SM01350 SD85_RS11960 SD85_RS12015 SM00382 ATPases associated with a variety of cellular activities SD85_RS12025 SM00062 Bacterial periplasmic substrate-binding proteins SD85_RS12025 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SD85_RS12035 SM00046 Diacylglycerol kinase catalytic domain (presumed) SD85_RS12045 SM00422 helix_turn_helix, mercury resistance SD85_RS12055 SM00861 Transketolase, pyrimidine binding domain SD85_RS12075 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SD85_RS12085 SM00091 PAS domain SD85_RS12085 SM00382 ATPases associated with a variety of cellular activities SD85_RS12130 SM00646 SD85_RS12130 SD85_RS12155 SM00448 cheY-homologous receiver domain SD85_RS12165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_RS12180 SM00363 S4 RNA-binding domain SD85_RS12185 SM00861 Transketolase, pyrimidine binding domain SD85_RS12220 SM00878 Biotin carboxylase C-terminal domain SD85_RS12265 SM00382 ATPases associated with a variety of cellular activities SD85_RS12275 SM00841 Elongation factor P, C-terminal SD85_RS12275 SM01185 SD85_RS12275 SD85_RS12310 SM00529 Helix-turn-helix diphteria tox regulatory element SD85_RS12320 SM00450 Rhodanese Homology Domain SD85_RS12340 SM00487 DEAD-like helicases superfamily SD85_RS12340 SM00490 helicase superfamily c-terminal domain SD85_RS12355 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS12415 SM00382 ATPases associated with a variety of cellular activities SD85_RS12420 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS12430 SM01091 Transporter associated domain SD85_RS12455 SM00849 Metallo-beta-lactamase superfamily SD85_RS12475 SM00631 SD85_RS12475 SD85_RS12495 SM00028 Tetratricopeptide repeats SD85_RS12535 SM00382 ATPases associated with a variety of cellular activities SD85_RS12540 SM00382 ATPases associated with a variety of cellular activities SD85_RS12620 SM00518 AP endonuclease family 2 SD85_RS12625 SM00487 DEAD-like helicases superfamily SD85_RS12625 SM00490 helicase superfamily c-terminal domain SD85_RS12660 SM00400 zinc finger SD85_RS12660 SM00493 SD85_RS12660 SD85_RS12675 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS12720 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_RS12775 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_RS12790 SM00271 DnaJ molecular chaperone homology domain SD85_RS12810 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_RS12815 SM00838 Elongation factor G C-terminus SD85_RS12850 SM00849 Metallo-beta-lactamase superfamily SD85_RS12860 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SD85_RS12880 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_RS12890 SM01103 SD85_RS12890 SD85_RS12930 SM00644 SD85_RS12930 SD85_RS12940 SM01350 SD85_RS12940 SD85_RS12995 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS13015 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS13035 SM00422 helix_turn_helix, mercury resistance SD85_RS13055 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS13055 SM00895 SD85_RS13055 SD85_RS13075 SM00861 Transketolase, pyrimidine binding domain SD85_RS13095 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_RS13115 SM00014 Acid phosphatase homologues SD85_RS13125 SM00287 Bacterial SH3 domain homologues SD85_RS13170 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS13175 SM00422 helix_turn_helix, mercury resistance SD85_RS13180 SM00422 helix_turn_helix, mercury resistance SD85_RS13190 SM00829 Enoylreductase SD85_RS13200 SM00640 Glycosyl hydrolases family 32 SD85_RS13225 SM00382 ATPases associated with a variety of cellular activities SD85_RS13315 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_RS13315 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SD85_RS13345 SM00650 Ribosomal RNA adenine dimethylases SD85_RS13400 SM00732 Likely ribonuclease with RNase H fold. SD85_RS13410 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SD85_RS13435 SM00382 ATPases associated with a variety of cellular activities SD85_RS13440 SM00028 Tetratricopeptide repeats SD85_RS13460 SM00382 ATPases associated with a variety of cellular activities SD85_RS13505 SM00287 Bacterial SH3 domain homologues SD85_RS13505 SM00646 SD85_RS13505 SD85_RS13515 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_RS13515 SM00954 Region found in RelA / SpoT proteins SD85_RS13565 SM01323 SD85_RS13565 SD85_RS13585 SM00382 ATPases associated with a variety of cellular activities SD85_RS13590 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SD85_RS13635 SM00257 Lysin motif SD85_RS13680 SM01317 SD85_RS13680 SD85_RS13780 SM00257 Lysin motif SD85_RS13790 SM01004 Delta-aminolevulinic acid dehydratase SD85_RS13825 SM00382 ATPases associated with a variety of cellular activities SD85_RS13825 SM00464 Found in ATP-dependent protease La (LON) SD85_RS13830 SM00382 ATPases associated with a variety of cellular activities SD85_RS13835 SM00382 ATPases associated with a variety of cellular activities SD85_RS13835 SM00994 ClpX C4-type zinc finger SD85_RS13835 SM01086 C-terminal, D2-small domain, of ClpB protein SD85_RS13860 SM01329 SD85_RS13860 SD85_RS13865 SM00917 LeuA allosteric (dimerisation) domain SD85_RS13895 SM00612 SD85_RS13895 SD85_RS13925 SM00909 Sporulation and spore germination SD85_RS13935 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS13940 SM00421 helix_turn_helix, Lux Regulon SD85_RS13980 SM00465 GIY-YIG type nucleases (URI domain) SD85_RS13990 SM00813 Alpha-L-arabinofuranosidase C-terminus SD85_RS13995 SM00893 Electron transfer flavoprotein domain SD85_RS14000 SM00893 Electron transfer flavoprotein domain SD85_RS14025 SM00463 Small MutS-related domain SD85_RS14025 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SD85_RS14025 SM00534 ATPase domain of DNA mismatch repair MUTS family SD85_RS14030 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SD85_RS14030 SM00481 DNA polymerase alpha chain like domain SD85_RS14030 SM00483 DNA polymerase X family SD85_RS14050 SM00873 B3/4 domain SD85_RS14050 SM00874 tRNA synthetase B5 domain SD85_RS14050 SM00896 Ferredoxin-fold anticodon binding domain SD85_RS14060 SM00967 RNA 2'-O ribose methyltransferase substrate binding SD85_RS14110 SM00813 Alpha-L-arabinofuranosidase C-terminus SD85_RS14140 SM01007 Class II Aldolase and Adducin N-terminal domain SD85_RS14210 SM00448 cheY-homologous receiver domain SD85_RS14210 SM00850 LytTr DNA-binding domain SD85_RS14215 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SD85_RS14215 SM00387 Histidine kinase-like ATPases SD85_RS14225 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SD85_RS14240 SM00382 ATPases associated with a variety of cellular activities SD85_RS14260 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SD85_RS14295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SD85_RS14295 SM01232 SD85_RS14295 SD85_RS14300 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SD85_RS14300 SM00474 3'-5' exonuclease SD85_RS14300 SM00475 5'-3' exonuclease SD85_RS14300 SM00482 DNA polymerase A domain SD85_RS14305 SM00091 PAS domain SD85_RS14305 SM00387 Histidine kinase-like ATPases SD85_RS14305 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS14310 SM00448 cheY-homologous receiver domain SD85_RS14310 SM00862 Transcriptional regulatory protein, C terminal SD85_RS14320 SM01329 SD85_RS14320 SD85_RS14365 SM00919 Malic enzyme, NAD binding domain SD85_RS14365 SM01274 SD85_RS14365 SD85_RS14370 SM00481 DNA polymerase alpha chain like domain SD85_RS14400 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS14405 SM00849 Metallo-beta-lactamase superfamily SD85_RS14430 SM00852 Probable molybdopterin binding domain SD85_RS14490 SM00981 SD85_RS14490 SD85_RS14520 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SD85_RS14525 SM00267 diguanylate cyclase SD85_RS14530 SM00363 S4 RNA-binding domain SD85_RS14530 SM01390 SD85_RS14530 SD85_RS14540 SM00363 S4 RNA-binding domain SD85_RS14555 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS14575 SM00354 helix_turn _helix lactose operon repressor SD85_RS14580 SM00830 Chorismate mutase type II SD85_RS14605 SM00382 ATPases associated with a variety of cellular activities SD85_RS14605 SM00843 SD85_RS14605 SD85_RS14640 SM00919 Malic enzyme, NAD binding domain SD85_RS14640 SM01274 SD85_RS14640 SD85_RS14645 SM00849 Metallo-beta-lactamase superfamily SD85_RS14665 SM00642 Alpha-amylase domain SD85_RS14670 SM00046 Diacylglycerol kinase catalytic domain (presumed) SD85_RS14705 SM00382 ATPases associated with a variety of cellular activities SD85_RS14710 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_RS14715 SM00363 S4 RNA-binding domain SD85_RS14765 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS14790 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_RS14790 SM00876 Biotin and Thiamin Synthesis associated domain SD85_RS14825 SM00354 helix_turn _helix lactose operon repressor SD85_RS14850 SM00450 Rhodanese Homology Domain SD85_RS14865 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SD85_RS14865 SM00091 PAS domain SD85_RS14885 SM00382 ATPases associated with a variety of cellular activities SD85_RS14890 SM00387 Histidine kinase-like ATPases SD85_RS14895 SM00448 cheY-homologous receiver domain SD85_RS14895 SM00862 Transcriptional regulatory protein, C terminal SD85_RS14905 SM00382 ATPases associated with a variety of cellular activities SD85_RS14920 SM00382 ATPases associated with a variety of cellular activities SD85_RS14925 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS14940 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_RS15000 SM00382 ATPases associated with a variety of cellular activities SD85_RS15050 SM01234 SD85_RS15050 SD85_RS15055 SM00947 Carbonic anhydrase SD85_RS15090 SM00382 ATPases associated with a variety of cellular activities SD85_RS15100 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SD85_RS15140 SM00984 UDP binding domain SD85_RS15200 SM00642 Alpha-amylase domain SD85_RS15340 SM00244 prohibitin homologues SD85_RS15395 SM00047 Lysozyme subfamily 2 SD85_RS15445 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_RS15445 SM01134 SD85_RS15445 SD85_RS15450 SM01007 Class II Aldolase and Adducin N-terminal domain SD85_RS15455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_RS15455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS15455 SM00319 Homologues of the ligand binding domain of Tar SD85_RS15460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_RS15460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS15460 SM00319 Homologues of the ligand binding domain of Tar SD85_RS15465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_RS15465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS15465 SM00319 Homologues of the ligand binding domain of Tar SD85_RS15470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_RS15470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS15470 SM00319 Homologues of the ligand binding domain of Tar SD85_RS15495 SM00642 Alpha-amylase domain SD85_RS15510 SM01091 Transporter associated domain SD85_RS15565 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_RS15575 SM00344 helix_turn_helix ASNC type SD85_RS15595 SM00387 Histidine kinase-like ATPases SD85_RS15595 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS15600 SM01298 SD85_RS15600 SD85_RS15605 SM00479 SD85_RS15605 SD85_RS15635 SM00091 PAS domain SD85_RS15635 SM00387 Histidine kinase-like ATPases SD85_RS15640 SM00448 cheY-homologous receiver domain SD85_RS15695 SM00421 helix_turn_helix, Lux Regulon SD85_RS15695 SM00448 cheY-homologous receiver domain SD85_RS15700 SM00387 Histidine kinase-like ATPases SD85_RS15725 SM00052 Putative diguanylate phosphodiesterase SD85_RS15770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_RS15815 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SD85_RS15815 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SD85_RS15825 SM00923 MbtH-like protein SD85_RS15830 SM00823 Phosphopantetheine attachment site SD85_RS15830 SM00824 Thioesterase SD85_RS15915 SM01240 SD85_RS15915 SD85_RS15930 SM00382 ATPases associated with a variety of cellular activities SD85_RS16045 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_RS16130 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SD85_RS16175 SM00382 ATPases associated with a variety of cellular activities SD85_RS16180 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS16180 SM00866 SD85_RS16180 SD85_RS16210 SM00465 GIY-YIG type nucleases (URI domain) SD85_RS16235 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_RS16260 SM00382 ATPases associated with a variety of cellular activities SD85_RS16285 SM00382 ATPases associated with a variety of cellular activities SD85_RS16285 SM00930 SD85_RS16285 SD85_RS16300 SM00493 SD85_RS16300 SD85_RS16355 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS16385 SM00382 ATPases associated with a variety of cellular activities SD85_RS16410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_RS16415 SM00448 cheY-homologous receiver domain SD85_RS16415 SM00862 Transcriptional regulatory protein, C terminal SD85_RS16420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS16420 SM00387 Histidine kinase-like ATPases SD85_RS16420 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS16460 SM00421 helix_turn_helix, Lux Regulon SD85_RS16460 SM00448 cheY-homologous receiver domain SD85_RS16465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS16465 SM00387 Histidine kinase-like ATPases SD85_RS16500 SM00382 ATPases associated with a variety of cellular activities SD85_RS16530 SM00387 Histidine kinase-like ATPases SD85_RS16530 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS16535 SM00448 cheY-homologous receiver domain SD85_RS16535 SM00862 Transcriptional regulatory protein, C terminal SD85_RS16555 SM00835 Cupin SD85_RS16570 SM00382 ATPases associated with a variety of cellular activities SD85_RS16580 SM00382 ATPases associated with a variety of cellular activities SD85_RS16725 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS16725 SM00895 SD85_RS16725 SD85_RS16765 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_RS16765 SM00357 Cold shock protein domain SD85_RS16765 SM00955 SD85_RS16765 SD85_RS16785 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS16790 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS16795 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS16805 SM00387 Histidine kinase-like ATPases SD85_RS16805 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS16810 SM00448 cheY-homologous receiver domain SD85_RS16810 SM00862 Transcriptional regulatory protein, C terminal SD85_RS16825 SM00382 ATPases associated with a variety of cellular activities SD85_RS16840 SM01260 SD85_RS16840 SD85_RS16845 SM00382 ATPases associated with a variety of cellular activities SD85_RS16870 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS16870 SM00382 ATPases associated with a variety of cellular activities SD85_RS16905 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_RS16905 SM00382 ATPases associated with a variety of cellular activities SD85_RS16935 SM01192 SD85_RS16935 SD85_RS16935 SM01193 SD85_RS16935 SD85_RS16960 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SD85_RS16975 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS16995 SM00636 SD85_RS16995 SD85_RS17025 SM00421 helix_turn_helix, Lux Regulon SD85_RS17025 SM00448 cheY-homologous receiver domain SD85_RS17040 SM00382 ATPases associated with a variety of cellular activities SD85_RS17050 SM00331 Sigma factor PP2C-like phosphatases SD85_RS17080 SM00354 helix_turn _helix lactose operon repressor SD85_RS17085 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS17085 SM00895 SD85_RS17085 SD85_RS17180 SM00530 Helix-turn-helix XRE-family like proteins SD85_RS17220 SM00640 Glycosyl hydrolases family 32 SD85_RS17275 SM00947 Carbonic anhydrase SD85_RS17290 SM00382 ATPases associated with a variety of cellular activities SD85_RS17295 SM00387 Histidine kinase-like ATPases SD85_RS17300 SM00448 cheY-homologous receiver domain SD85_RS17300 SM00862 Transcriptional regulatory protein, C terminal SD85_RS17350 SM00028 Tetratricopeptide repeats SD85_RS17355 SM00382 ATPases associated with a variety of cellular activities SD85_RS17460 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS17460 SM00866 SD85_RS17460 SD85_RS17470 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS17485 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS17520 SM00382 ATPases associated with a variety of cellular activities SD85_RS17525 SM00487 DEAD-like helicases superfamily SD85_RS17525 SM00490 helicase superfamily c-terminal domain SD85_RS17550 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_RS17560 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_RS17560 SM00245 tail specific protease SD85_RS17570 SM00382 ATPases associated with a variety of cellular activities SD85_RS17585 SM00937 SD85_RS17585 SD85_RS17590 SM00957 SecA DEAD-like domain SD85_RS17590 SM00958 SecA preprotein cross-linking domain SD85_RS17680 SM00487 DEAD-like helicases superfamily SD85_RS17680 SM00490 helicase superfamily c-terminal domain SD85_RS17690 SM00421 helix_turn_helix, Lux Regulon SD85_RS17690 SM00448 cheY-homologous receiver domain SD85_RS17695 SM00387 Histidine kinase-like ATPases SD85_RS17735 SM00984 UDP binding domain SD85_RS17760 SM00646 SD85_RS17760 SD85_RS17805 SM00382 ATPases associated with a variety of cellular activities SD85_RS17875 SM00047 Lysozyme subfamily 2 SD85_RS17875 SM00287 Bacterial SH3 domain homologues SD85_RS17930 SM00854 Bacterial capsule synthesis protein PGA_cap SD85_RS17945 SM00354 helix_turn _helix lactose operon repressor SD85_RS17960 SM00382 ATPases associated with a variety of cellular activities SD85_RS17975 SM00287 Bacterial SH3 domain homologues SD85_RS18015 SM00903 Flavin reductase like domain SD85_RS18030 SM00344 helix_turn_helix ASNC type SD85_RS18065 SM00342 helix_turn_helix, arabinose operon control protein SD85_RS18110 SM00984 UDP binding domain SD85_RS18140 SM00487 DEAD-like helicases superfamily SD85_RS18140 SM00490 helicase superfamily c-terminal domain SD85_RS18150 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_RS18150 SM01134 SD85_RS18150 SD85_RS18180 SM00448 cheY-homologous receiver domain SD85_RS18180 SM00862 Transcriptional regulatory protein, C terminal SD85_RS18185 SM00387 Histidine kinase-like ATPases SD85_RS18185 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS18185 SM00448 cheY-homologous receiver domain SD85_RS18200 SM00028 Tetratricopeptide repeats SD85_RS18225 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS18235 SM00710 Parallel beta-helix repeats SD85_RS18235 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses SD85_RS18265 SM00938 Nitrogen regulatory protein P-II SD85_RS18270 SM00014 Acid phosphatase homologues SD85_RS18305 SM00155 Phospholipase D. Active site motifs. SD85_RS18310 SM00422 helix_turn_helix, mercury resistance SD85_RS18345 SM00382 ATPases associated with a variety of cellular activities SD85_RS18350 SM00382 ATPases associated with a variety of cellular activities SD85_RS18380 SM00028 Tetratricopeptide repeats SD85_RS18385 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_RS18400 SM00327 von Willebrand factor (vWF) type A domain SD85_RS18410 SM00327 von Willebrand factor (vWF) type A domain SD85_RS18445 SM00382 ATPases associated with a variety of cellular activities SD85_RS18510 SM00226 Low molecular weight phosphatase family SD85_RS18550 SM00937 SD85_RS18550 SD85_RS18570 SM00919 Malic enzyme, NAD binding domain SD85_RS18570 SM01274 SD85_RS18570 SD85_RS18585 SM00357 Cold shock protein domain SD85_RS18585 SM00382 ATPases associated with a variety of cellular activities SD85_RS18585 SM00959 Rho termination factor, N-terminal domain SD85_RS18615 SM00448 cheY-homologous receiver domain SD85_RS18645 SM00155 Phospholipase D. Active site motifs. SD85_RS18665 SM00382 ATPases associated with a variety of cellular activities SD85_RS18670 SM00155 Phospholipase D. Active site motifs. SD85_RS18695 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_RS18710 SM00100 Cyclic nucleotide-monophosphate binding domain SD85_RS18710 SM00419 helix_turn_helix, cAMP Regulatory protein SD85_RS18720 SM00836 DALR anticodon binding domain SD85_RS18720 SM01016 Arginyl tRNA synthetase N terminal dom SD85_RS18735 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_RS18745 SM00382 ATPases associated with a variety of cellular activities SD85_RS18780 SM00028 Tetratricopeptide repeats SD85_RS18820 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS18825 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SD85_RS18840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_RS18935 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SD85_RS18975 SM00858 SD85_RS18975 SD85_RS19030 SM00986 Uracil DNA glycosylase superfamily SD85_RS19030 SM00987 UreE urease accessory protein, C-terminal domain SD85_RS19065 SM00640 Glycosyl hydrolases family 32 SD85_RS19080 SM01061 CAT RNA binding domain SD85_RS19230 SM00382 ATPases associated with a variety of cellular activities SD85_RS19270 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SD85_RS19300 SM01061 CAT RNA binding domain SD85_RS19315 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS19320 SM00363 S4 RNA-binding domain SD85_RS19330 SM00954 Region found in RelA / SpoT proteins SD85_RS19415 SM01060 SD85_RS19415 SD85_RS19430 SM00382 ATPases associated with a variety of cellular activities SD85_RS19465 SM00382 ATPases associated with a variety of cellular activities SD85_RS19470 SM00382 ATPases associated with a variety of cellular activities SD85_RS19505 SM00635 Bacterial Ig-like domain 2 SD85_RS19515 SM00382 ATPases associated with a variety of cellular activities SD85_RS19580 SM00822 SD85_RS19580 SD85_RS19585 SM00882 Coenzyme A transferase SD85_RS19590 SM00882 Coenzyme A transferase SD85_RS19625 SM01060 SD85_RS19625 SD85_RS19655 SM01061 CAT RNA binding domain SD85_RS19670 SM00487 DEAD-like helicases superfamily SD85_RS19670 SM00490 helicase superfamily c-terminal domain SD85_RS19900 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SD85_RS19910 SM01133 SD85_RS19910 SD85_RS19940 SM00382 ATPases associated with a variety of cellular activities SD85_RS19950 SM00062 Bacterial periplasmic substrate-binding proteins SD85_RS20020 SM00382 ATPases associated with a variety of cellular activities SD85_RS20025 SM00387 Histidine kinase-like ATPases SD85_RS20030 SM00448 cheY-homologous receiver domain SD85_RS20030 SM00862 Transcriptional regulatory protein, C terminal SD85_RS20085 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_RS20085 SM01134 SD85_RS20085 SD85_RS20110 SM00387 Histidine kinase-like ATPases SD85_RS20165 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS20195 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS20195 SM00895 SD85_RS20195 SD85_RS20210 SM01350 SD85_RS20210 SD85_RS20240 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_RS20240 SM00866 SD85_RS20240 SD85_RS20340 SM00091 PAS domain SD85_RS20340 SM00382 ATPases associated with a variety of cellular activities SD85_RS20350 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_RS20355 SM00849 Metallo-beta-lactamase superfamily SD85_RS20370 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SD85_RS20370 SM00091 PAS domain SD85_RS20370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_RS20370 SM00387 Histidine kinase-like ATPases SD85_RS20370 SM00388 His Kinase A (phosphoacceptor) domain SD85_RS20375 SM00448 cheY-homologous receiver domain SD85_RS20375 SM00862 Transcriptional regulatory protein, C terminal SD85_RS20400 SM00788 Adenylosuccinate synthetase SD85_RS20410 SM00382 ATPases associated with a variety of cellular activities SD85_RS20450 SM00267 diguanylate cyclase SD85_RS20475 SM01131 SD85_RS20475 SD85_RS20525 SM00849 Metallo-beta-lactamase superfamily SD85_RS20540 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_RS20570 SM01266 SD85_RS20570 SD85_RS20580 SM00354 helix_turn _helix lactose operon repressor SD85_RS20610 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_RS20630 SM00470 ParB-like nuclease domain SD85_RS20645 SM00470 ParB-like nuclease domain SD85_RS20655 SM01228 SD85_RS20655 SD85_RS20665 SM00393 Putative single-stranded nucleic acids-binding domain SD85_RS20665 SM01245 SD85_RS20665