locus-tag	class	description
D9C12_RS00010	COG1131	(ABC) transporter
D9C12_RS00030	COG1595	DNA-templated transcription, initiation
D9C12_RS00035	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
D9C12_RS00040	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
D9C12_RS00045	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
D9C12_RS00050	COG4988	ABC transporter
D9C12_RS00055	COG1294	oxidase, subunit
D9C12_RS00060	COG1271	oxidase subunit
D9C12_RS00065	COG3493	citrate carrier protein
D9C12_RS00070	COG0501	Belongs to the peptidase M48B family
D9C12_RS00080	COG0726	polysaccharide deacetylase
D9C12_RS00085	COG3842	ATPase activity
D9C12_RS00090	COG2508	Transcriptional regulator
D9C12_RS00095	COG1012	belongs to the aldehyde dehydrogenase family
D9C12_RS00100	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9C12_RS00110	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
D9C12_RS00125	COG2197	response regulator
D9C12_RS00130	COG2195	Cleaves the N-terminal amino acid of tripeptides
D9C12_RS00140	COG4894	glucomannan catabolic process
D9C12_RS00145	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
D9C12_RS00150	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
D9C12_RS00155	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS00160	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
D9C12_RS00165	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
D9C12_RS00170	COG2610	gluconate transmembrane transporter activity
D9C12_RS00175	COG0500	methyltransferase
D9C12_RS00180	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D9C12_RS00195	COG0693	protein deglycase activity
D9C12_RS00195	COG0753	catalase activity
D9C12_RS00200	COG2851	Citrate transporter
D9C12_RS00205	COG2273	Hydrolase Family 16
D9C12_RS00210	COG3711	transcriptional antiterminator
D9C12_RS00225	COG2270	Major facilitator Superfamily
D9C12_RS00230	COG0513	Belongs to the DEAD box helicase family
D9C12_RS00235	COG3401	FG-GAP repeat protein
D9C12_RS00235	COG2755	lipolytic protein G-D-S-L family
D9C12_RS00365	COG0589	response to stress
D9C12_RS00385	COG5444	nuclease activity
D9C12_RS00405	COG0494	nUDIX hydrolase
D9C12_RS00410	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
D9C12_RS00415	COG3507	Belongs to the glycosyl hydrolase 43 family
D9C12_RS00430	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
D9C12_RS00435	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D9C12_RS00440	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
D9C12_RS00445	COG2390	Transcriptional regulator
D9C12_RS00455	COG3192	ethanolamine utilization protein
D9C12_RS00460	COG2079	MmgE PrpD family protein
D9C12_RS00465	COG1473	amidohydrolase
D9C12_RS00470	COG1126	abc transporter atp-binding protein
D9C12_RS00475	COG0765	amino acid transport
D9C12_RS00480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9C12_RS00485	COG0456	acetyltransferase
D9C12_RS00490	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D9C12_RS00495	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
D9C12_RS00500	COG0561	phosphatase activity
D9C12_RS00540	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9C12_RS00545	COG5294	Protein conserved in bacteria
D9C12_RS00550	COG0577	efflux transmembrane transporter activity
D9C12_RS00555	COG1136	(ABC) transporter
D9C12_RS00560	COG2205	protein histidine kinase activity
D9C12_RS00565	COG0745	RESPONSE REGULATOR receiver
D9C12_RS00570	COG0191	fructose-bisphosphate aldolase activity
D9C12_RS00575	COG1082	Xylose isomerase domain protein TIM barrel
D9C12_RS00580	COG1082	Xylose isomerase domain protein TIM barrel
D9C12_RS00585	COG0673	inositol 2-dehydrogenase activity
D9C12_RS00590	COG2814	Major facilitator Superfamily
D9C12_RS00595	COG1082	Xylose isomerase domain protein TIM barrel
D9C12_RS00600	COG3962	Belongs to the TPP enzyme family
D9C12_RS00605	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9C12_RS00620	COG1349	DNA-binding transcription factor activity
D9C12_RS00625	COG0667	Aldo Keto reductase
D9C12_RS00655	COG0326	Molecular chaperone. Has ATPase activity
D9C12_RS00670	COG1309	transcriptional regulator
D9C12_RS00675	COG1012	belongs to the aldehyde dehydrogenase family
D9C12_RS00680	COG1714	RDD family
D9C12_RS00690	COG1714	RDD family
D9C12_RS00695	COG2311	Membrane
D9C12_RS00700	COG1917	Cupin 2, conserved barrel domain protein
D9C12_RS00705	COG1309	transcriptional regulator
D9C12_RS00710	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS00715	COG1846	Transcriptional regulator
D9C12_RS00720	COG1380	Effector of murein hydrolase LrgA
D9C12_RS00725	COG1346	cytolysis
D9C12_RS00730	COG5039	Polysaccharide pyruvyl transferase
D9C12_RS00735	COG1929	Belongs to the glycerate kinase type-1 family
D9C12_RS00740	COG1802	Transcriptional regulator
D9C12_RS00745	COG1070	Carbohydrate kinase
D9C12_RS00750	COG2610	gluconate transmembrane transporter activity
D9C12_RS00755	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
D9C12_RS00760	COG0450	alkyl hydroperoxide reductase
D9C12_RS00765	COG3634	alkyl hydroperoxide reductase activity
D9C12_RS00770	COG2723	6-phospho-beta-galactosidase activity
D9C12_RS00775	COG2190	(PTS) system
D9C12_RS00785	COG2188	Transcriptional regulator
D9C12_RS00795	COG1131	(ABC) transporter
D9C12_RS00800	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
D9C12_RS00815	COG0071	Belongs to the small heat shock protein (HSP20) family
D9C12_RS00850	COG0210	DNA helicase
D9C12_RS00895	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
D9C12_RS00910	COG1063	alcohol dehydrogenase
D9C12_RS00935	COG0456	acetyltransferase
D9C12_RS00950	COG0010	Belongs to the arginase family
D9C12_RS00955	COG0833	amino acid
D9C12_RS00960	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D9C12_RS00980	COG5658	integral membrane protein
D9C12_RS00985	COG0640	Transcriptional regulator
D9C12_RS00990	COG3829	transcription factor binding
D9C12_RS01005	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9C12_RS01010	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
D9C12_RS01015	COG4853	Protein conserved in bacteria
D9C12_RS01020	COG4863	YycH protein
D9C12_RS01025	COG5002	protein histidine kinase activity
D9C12_RS01030	COG0745	RESPONSE REGULATOR receiver
D9C12_RS01065	COG0305	Participates in initiation and elongation during chromosome replication
D9C12_RS01080	COG3093	addiction module antidote protein HigA
D9C12_RS01085	COG2807	transmembrane transport
D9C12_RS01090	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
D9C12_RS01095	COG0359	binds to the 23S rRNA
D9C12_RS01100	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
D9C12_RS01120	COG1733	regulation of RNA biosynthetic process
D9C12_RS01125	COG1227	inorganic diphosphatase activity
D9C12_RS01145	COG0789	Transcriptional regulator
D9C12_RS01145	COG4978	Transcriptional regulator
D9C12_RS01155	COG4319	ketosteroid isomerase
D9C12_RS01160	COG1357	PFAM Pentapeptide repeats (8 copies)
D9C12_RS01175	COG1846	Transcriptional regulator
D9C12_RS01180	COG2153	protein acetylation
D9C12_RS01185	COG2364	Membrane
D9C12_RS01200	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
D9C12_RS01210	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
D9C12_RS01215	COG1331	Highly conserved protein containing a thioredoxin domain
D9C12_RS01220	COG1266	CAAX protease self-immunity
D9C12_RS01225	COG0477	Major facilitator Superfamily
D9C12_RS01225	COG2814	Major facilitator Superfamily
D9C12_RS01230	COG0110	maltose O-acetyltransferase activity
D9C12_RS01235	COG0346	lactoylglutathione lyase activity
D9C12_RS01245	COG0708	Exodeoxyribonuclease III
D9C12_RS01250	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
D9C12_RS01255	COG0629	single-stranded DNA binding
D9C12_RS01260	COG0360	Binds together with S18 to 16S ribosomal RNA
D9C12_RS01265	COG0012	GTP binding
D9C12_RS01270	COG0243	molybdopterin cofactor binding
D9C12_RS01275	COG4481	Protein conserved in bacteria
D9C12_RS01280	COG3949	Membrane
D9C12_RS01295	COG1475	DNA binding
D9C12_RS01300	COG1192	Involved in chromosome partitioning
D9C12_RS01310	COG1475	DNA binding
D9C12_RS01315	COG0357	Ribosomal RNA small subunit methyltransferase G
D9C12_RS01320	COG0445	tRNA wobble uridine modification
D9C12_RS01325	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
D9C12_RS01330	COG1847	R3H domain protein
D9C12_RS01335	COG0706	membrane insertase activity
D9C12_RS01340	COG0594	ribonuclease P activity
D9C12_RS01350	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
D9C12_RS01355	COG0592	DNA-directed DNA polymerase activity
D9C12_RS01360	COG2501	S4 domain
D9C12_RS01365	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
D9C12_RS01375	COG0187	DNA topoisomerase II activity
D9C12_RS01380	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D9C12_RS01415	COG0517	IMP dehydrogenase activity
D9C12_RS01415	COG0516	GMP reductase activity
D9C12_RS01420	COG1686	Belongs to the peptidase S11 family
D9C12_RS01425	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
D9C12_RS01430	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
D9C12_RS01435	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
D9C12_RS01445	COG1428	Deoxynucleoside kinase
D9C12_RS01450	COG1428	Deoxynucleoside kinase
D9C12_RS01455	COG3858	chitin binding
D9C12_RS01455	COG1388	LysM domain
D9C12_RS01460	COG1335	isochorismatase
D9C12_RS01465	COG0590	tRNA wobble adenosine to inosine editing
D9C12_RS01475	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
D9C12_RS01480	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
D9C12_RS01485	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
D9C12_RS01530	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
D9C12_RS01535	COG3853	Toxic anion resistance protein (TelA)
D9C12_RS01540	COG1982	Orn Lys Arg decarboxylase major
D9C12_RS01545	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
D9C12_RS01550	COG3870	Protein conserved in bacteria
D9C12_RS01555	COG1728	Protein conserved in bacteria
D9C12_RS01560	COG0470	DNA polymerase III
D9C12_RS01565	COG1774	PSP1 C-terminal conserved region
D9C12_RS01570	COG4467	Involved in initiation control of chromosome replication
D9C12_RS01575	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
D9C12_RS01580	COG2827	Endonuclease containing a URI domain
D9C12_RS01585	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
D9C12_RS01590	COG2002	toxin-antitoxin pair type II binding
D9C12_RS01595	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9C12_RS01595	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9C12_RS01600	COG0084	hydrolase, TatD family'
D9C12_RS01605	COG3583	domain protein
D9C12_RS01605	COG3584	3D domain protein
D9C12_RS01610	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
D9C12_RS01615	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
D9C12_RS01625	COG4466	Protein conserved in bacteria
D9C12_RS01635	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
D9C12_RS01640	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
D9C12_RS01645	COG0251	oxidation-reduction process
D9C12_RS01650	COG2088	sporulation resulting in formation of a cellular spore
D9C12_RS01655	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
D9C12_RS01660	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
D9C12_RS01665	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
D9C12_RS01670	COG0193	aminoacyl-tRNA hydrolase activity
D9C12_RS01680	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
D9C12_RS01685	COG2002	toxin-antitoxin pair type II binding
D9C12_RS01690	COG2244	polysaccharide biosynthetic process
D9C12_RS01695	COG3956	TIGRFAM MazG family protein
D9C12_RS01700	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
D9C12_RS01715	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
D9C12_RS01720	COG1098	S1 RNA binding domain
D9C12_RS01735	COG2208	phosphoserine phosphatase activity
D9C12_RS01740	COG2304	oxidoreductase activity
D9C12_RS01745	COG0515	serine threonine protein kinase
D9C12_RS01750	COG0037	tRNA processing
D9C12_RS01755	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
D9C12_RS01760	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
D9C12_RS01765	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
D9C12_RS01770	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
D9C12_RS01775	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D9C12_RS01780	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D9C12_RS01795	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D9C12_RS01800	COG0512	Glutamine amidotransferase of anthranilate synthase
D9C12_RS01805	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D9C12_RS01810	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
D9C12_RS01815	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
D9C12_RS01820	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
D9C12_RS01825	COG1396	sequence-specific DNA binding
D9C12_RS01830	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D9C12_RS01835	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
D9C12_RS01915	COG4463	regulation of RNA biosynthetic process
D9C12_RS01920	COG3880	PFAM UvrB UvrC protein
D9C12_RS01925	COG3869	Catalyzes the specific phosphorylation of arginine residues in
D9C12_RS01930	COG0542	response to heat
D9C12_RS01935	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
D9C12_RS01940	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
D9C12_RS01945	COG4956	integral membrane protein (PIN domain superfamily)
D9C12_RS01950	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
D9C12_RS01955	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
D9C12_RS01960	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
D9C12_RS01970	COG1045	serine acetyltransferase
D9C12_RS01975	COG0215	cysteine-tRNA ligase activity
D9C12_RS01980	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
D9C12_RS01985	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D9C12_RS01990	COG3688	RNA-binding protein containing a PIN domain
D9C12_RS01995	COG1595	DNA-templated transcription, initiation
D9C12_RS02005	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D9C12_RS02010	COG0250	Participates in transcription elongation, termination and antitermination
D9C12_RS02020	COG0081	regulation of translation
D9C12_RS02025	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
D9C12_RS02035	COG2813	Specifically methylates the guanine in position
D9C12_RS02040	COG0085	RNA polymerase activity
D9C12_RS02045	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
D9C12_RS02050	COG1358	cellular component organization or biogenesis
D9C12_RS02055	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
D9C12_RS02060	COG0049	tRNA binding
D9C12_RS02065	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
D9C12_RS02070	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
D9C12_RS02075	COG0596	Alpha beta hydrolase
D9C12_RS02085	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
D9C12_RS02090	COG0088	Forms part of the polypeptide exit tunnel
D9C12_RS02100	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
D9C12_RS02115	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
D9C12_RS02120	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
D9C12_RS02130	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
D9C12_RS02135	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
D9C12_RS02145	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
D9C12_RS02155	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
D9C12_RS02160	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
D9C12_RS02165	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
D9C12_RS02170	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
D9C12_RS02180	COG0200	Binds to the 23S rRNA
D9C12_RS02185	COG0201	protein transport
D9C12_RS02190	COG0563	adenylate kinase activity
D9C12_RS02195	COG0024	Methionine aminopeptidase
D9C12_RS02200	COG2163	COG2163 Ribosomal protein L14E L6E L27E
D9C12_RS02210	COG0257	Belongs to the bacterial ribosomal protein bL36 family
D9C12_RS02215	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
D9C12_RS02220	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
D9C12_RS02225	COG0202	RNA polymerase activity
D9C12_RS02230	COG0203	ribosomal protein L17
D9C12_RS02235	COG1122	ATPase activity
D9C12_RS02240	COG1122	ATPase activity
D9C12_RS02245	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
D9C12_RS02250	COG0101	tRNA pseudouridine synthase activity
D9C12_RS02255	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
D9C12_RS02260	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
D9C12_RS02265	COG2226	methyltransferase
D9C12_RS02275	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS02280	COG0489	protein tyrosine kinase activity
D9C12_RS02290	COG2194	sulfuric ester hydrolase activity
D9C12_RS02295	COG0726	polysaccharide deacetylase
D9C12_RS02395	COG0659	secondary active sulfate transmembrane transporter activity
D9C12_RS02400	COG0385	Bile acid
D9C12_RS02405	COG2819	hydrolase of the alpha beta superfamily
D9C12_RS02410	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9C12_RS02415	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9C12_RS02420	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9C12_RS02425	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9C12_RS02425	COG2207	Transcriptional regulator
D9C12_RS02435	COG1472	Belongs to the glycosyl hydrolase 3 family
D9C12_RS02440	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D9C12_RS02445	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9C12_RS02445	COG1263	PTS System
D9C12_RS02450	COG1737	Transcriptional regulator
D9C12_RS02455	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
D9C12_RS02460	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS02465	COG1683	Conserved Protein
D9C12_RS02495	COG1595	DNA-templated transcription, initiation
D9C12_RS02500	COG5662	AntiSigma factor
D9C12_RS02505	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
D9C12_RS02510	COG4856	YbbR-like protein
D9C12_RS02515	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
D9C12_RS02520	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
D9C12_RS02550	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
D9C12_RS02555	COG3002	Belongs to the UPF0753 family
D9C12_RS02560	COG0288	reversible hydration of carbon dioxide
D9C12_RS02570	COG5609	conserved protein (DUF2294)
D9C12_RS02590	COG0515	serine threonine protein kinase
D9C12_RS02605	COG1113	amino acid transport
D9C12_RS02625	COG2602	Beta-lactamase
D9C12_RS02630	COG2124	cytochrome p450
D9C12_RS02640	COG0531	amino acid
D9C12_RS02645	COG0584	glycerophosphoryl diester phosphodiesterase
D9C12_RS02650	COG2271	Major facilitator Superfamily
D9C12_RS02665	COG0456	acetyltransferase
D9C12_RS02665	COG1846	Transcriptional regulator
D9C12_RS02685	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS02695	COG2207	Transcriptional regulator
D9C12_RS02695	COG1917	Cupin 2, conserved barrel domain protein
D9C12_RS02720	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
D9C12_RS02725	COG3591	Belongs to the peptidase S1B family
D9C12_RS02735	COG0596	Alpha beta hydrolase
D9C12_RS02740	COG1183	phosphatidylcholine synthase activity
D9C12_RS02745	COG0586	Pfam SNARE associated Golgi protein
D9C12_RS02750	COG0688	phosphatidylethanolamine metabolic process
D9C12_RS02760	COG2312	Erythromycin esterase
D9C12_RS02765	COG2207	Transcriptional regulator
D9C12_RS02770	COG1054	Belongs to the UPF0176 family
D9C12_RS02775	COG1301	dicarboxylic acid transport
D9C12_RS02780	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9C12_RS02780	COG1263	PTS System
D9C12_RS02780	COG2190	(PTS) system
D9C12_RS02785	COG0363	glucosamine-6-phosphate deaminase activity
D9C12_RS02790	COG2188	Transcriptional regulator
D9C12_RS02800	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D9C12_RS02805	COG0833	amino acid
D9C12_RS02810	COG2040	homocysteine
D9C12_RS02825	COG2066	Belongs to the glutaminase family
D9C12_RS02830	COG4191	Histidine kinase
D9C12_RS02835	COG0784	Response regulator, receiver
D9C12_RS02845	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D9C12_RS02850	COG1012	belongs to the aldehyde dehydrogenase family
D9C12_RS02855	COG2271	Major facilitator Superfamily
D9C12_RS02860	COG4948	Mandelate Racemase Muconate Lactonizing
D9C12_RS02865	COG2186	Transcriptional regulator
D9C12_RS02870	COG2721	sulfolactate sulfo-lyase activity
D9C12_RS02875	COG3173	Aminoglycoside phosphotransferase
D9C12_RS02885	COG0697	spore germination
D9C12_RS02890	COG0745	RESPONSE REGULATOR receiver
D9C12_RS02895	COG2205	protein histidine kinase activity
D9C12_RS02900	COG1131	(ABC) transporter
D9C12_RS02920	COG3773	Cell wall hydrolase
D9C12_RS02930	COG2304	oxidoreductase activity
D9C12_RS02940	COG3540	Alkaline phosphatase
D9C12_RS02945	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
D9C12_RS02950	COG0805	protein transport
D9C12_RS02955	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
D9C12_RS02960	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
D9C12_RS02965	COG0477	Major facilitator Superfamily
D9C12_RS02970	COG1309	transcriptional regulator
D9C12_RS02975	COG0252	asparaginase activity
D9C12_RS02980	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
D9C12_RS02985	COG1714	RDD family
D9C12_RS02990	COG1405	negative regulation of cell septum assembly
D9C12_RS02990	COG3012	SEC-C Motif Domain Protein
D9C12_RS02995	COG3290	protein histidine kinase activity
D9C12_RS03000	COG3279	Response regulator of the LytR AlgR family
D9C12_RS03005	COG4555	ABC transporter
D9C12_RS03010	COG1668	transmembrane transport
D9C12_RS03035	COG1595	DNA-templated transcription, initiation
D9C12_RS03040	COG1595	DNA-templated transcription, initiation
D9C12_RS03045	COG1876	peptidase activity
D9C12_RS03050	COG0457	Tetratricopeptide repeat
D9C12_RS03055	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS03060	COG0366	Alpha amylase catalytic
D9C12_RS03065	COG0803	Belongs to the bacterial solute-binding protein 9 family
D9C12_RS03070	COG1121	(ABC) transporter
D9C12_RS03075	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D9C12_RS03095	COG2310	stress, protein
D9C12_RS03100	COG2310	stress, protein
D9C12_RS03105	COG2310	stress, protein
D9C12_RS03110	COG0861	Integral membrane protein TerC family
D9C12_RS03120	COG3853	Toxic anion resistance protein (TelA)
D9C12_RS03125	COG0477	Major facilitator Superfamily
D9C12_RS03135	COG2814	Major facilitator Superfamily
D9C12_RS03140	COG0640	Transcriptional regulator
D9C12_RS03145	COG4175	Glycine betaine
D9C12_RS03145	COG0517	IMP dehydrogenase activity
D9C12_RS03150	COG4176	ABC-type proline glycine betaine transport system permease component
D9C12_RS03155	COG2113	Glycine betaine
D9C12_RS03160	COG1473	amidohydrolase
D9C12_RS03165	COG1288	antiporter activity
D9C12_RS03180	COG0039	L-malate dehydrogenase activity
D9C12_RS03185	COG1620	l-lactate permease
D9C12_RS03195	COG3403	YqcI/YcgG family
D9C12_RS03205	COG3665	Urea carboxylase-associated protein
D9C12_RS03210	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
D9C12_RS03215	COG1660	Displays ATPase and GTPase activities
D9C12_RS03225	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
D9C12_RS03235	COG0583	DNA-binding transcription factor activity
D9C12_RS03240	COG3458	cephalosporin-C deacetylase activity
D9C12_RS03245	COG3541	Predicted nucleotidyltransferase
D9C12_RS03250	COG0506	proline dehydrogenase activity
D9C12_RS03255	COG1012	belongs to the aldehyde dehydrogenase family
D9C12_RS03260	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9C12_RS03265	COG2508	Transcriptional regulator
D9C12_RS03270	COG3689	TIGRFAM TIGR03943 family protein
D9C12_RS03275	COG0701	Predicted permease
D9C12_RS03280	COG2267	carboxylic ester hydrolase activity
D9C12_RS03285	COG0492	ferredoxin-NADP+ reductase activity
D9C12_RS03290	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
D9C12_RS03290	COG1587	Uroporphyrinogen-III synthase
D9C12_RS03295	COG2146	nitrite reductase [NAD(P)H] activity
D9C12_RS03300	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D9C12_RS03305	COG0243	molybdopterin cofactor binding
D9C12_RS03310	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D9C12_RS03315	COG2223	nitrite transmembrane transporter activity
D9C12_RS03325	COG1376	ErfK ybiS ycfS ynhG family protein
D9C12_RS03340	COG0765	amino acid transport
D9C12_RS03345	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9C12_RS03355	COG1714	RDD family
D9C12_RS03365	COG1846	Transcriptional regulator
D9C12_RS03380	COG2723	6-phospho-beta-galactosidase activity
D9C12_RS03390	COG3209	COG3209 Rhs family protein
D9C12_RS03400	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
D9C12_RS03405	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
D9C12_RS03410	COG1733	regulation of RNA biosynthetic process
D9C12_RS03415	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9C12_RS03420	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9C12_RS03425	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9C12_RS03430	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
D9C12_RS03435	COG2814	Major facilitator Superfamily
D9C12_RS03445	COG0697	spore germination
D9C12_RS03455	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D9C12_RS03465	COG2364	Membrane
D9C12_RS03470	COG1126	abc transporter atp-binding protein
D9C12_RS03475	COG0765	amino acid transport
D9C12_RS03480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9C12_RS03485	COG0583	DNA-binding transcription factor activity
D9C12_RS03490	COG0163	prenyltransferase activity
D9C12_RS03495	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
D9C12_RS03510	COG0596	Alpha beta hydrolase
D9C12_RS03515	COG3104	oligopeptide transport
D9C12_RS03520	COG5434	Belongs to the glycosyl hydrolase 28 family
D9C12_RS03535	COG0697	spore germination
D9C12_RS03545	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
D9C12_RS03550	COG1136	(ABC) transporter
D9C12_RS03555	COG0577	efflux transmembrane transporter activity
D9C12_RS03560	COG0745	RESPONSE REGULATOR receiver
D9C12_RS03565	COG5002	protein histidine kinase activity
D9C12_RS03565	COG3850	Histidine kinase
D9C12_RS03570	COG0457	Tetratricopeptide repeat
D9C12_RS03590	COG0527	aspartate kinase activity
D9C12_RS03595	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9C12_RS03600	COG4605	iron ion homeostasis
D9C12_RS03605	COG4604	ABC transporter, ATP-binding protein
D9C12_RS03610	COG4607	ABC-type enterochelin transport system periplasmic component
D9C12_RS03615	COG2814	Major facilitator Superfamily
D9C12_RS03620	COG1309	transcriptional regulator
D9C12_RS03625	COG0778	Nitroreductase
D9C12_RS03630	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
D9C12_RS03635	COG0640	Transcriptional regulator
D9C12_RS03640	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D9C12_RS03645	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D9C12_RS03650	COG1012	belongs to the aldehyde dehydrogenase family
D9C12_RS03655	COG4975	Glucose uptake
D9C12_RS03660	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS03665	COG4549	nuclear export factor GLE1
D9C12_RS03670	COG2372	response to copper ion
D9C12_RS03670	COG1276	copper resistance
D9C12_RS03675	COG1349	DNA-binding transcription factor activity
D9C12_RS03685	COG2213	PTS system mannitol-specific
D9C12_RS03690	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9C12_RS03695	COG0246	Mannitol dehydrogenase
D9C12_RS03700	COG0473	3-isopropylmalate dehydrogenase activity
D9C12_RS03705	COG0681	Belongs to the peptidase S26 family
D9C12_RS03715	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
D9C12_RS03730	COG0561	phosphatase activity
D9C12_RS03735	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
D9C12_RS03740	COG1914	H( )-stimulated, divalent metal cation uptake system
D9C12_RS03745	COG4336	lyase activity
D9C12_RS03750	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
D9C12_RS03755	COG1984	allophanate hydrolase subunit 2
D9C12_RS03760	COG1414	Transcriptional regulator
D9C12_RS03765	COG2755	lipolytic protein G-D-S-L family
D9C12_RS03775	COG2329	Antibiotic biosynthesis monooxygenase
D9C12_RS03780	COG0768	penicillin binding
D9C12_RS03785	COG4989	oxidoreductase activity
D9C12_RS03790	COG3711	transcriptional antiterminator
D9C12_RS03795	COG0318	PFAM AMP-dependent synthetase and ligase
D9C12_RS03800	COG2226	methyltransferase
D9C12_RS03805	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS03810	COG1917	Cupin 2, conserved barrel domain protein
D9C12_RS03815	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS03820	COG3871	stress protein (general stress protein 26)
D9C12_RS03830	COG2814	Major facilitator Superfamily
D9C12_RS03835	COG1522	sequence-specific DNA binding
D9C12_RS03840	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D9C12_RS03840	COG0551	DNA topoisomerase type I activity
D9C12_RS03845	COG0494	nUDIX hydrolase
D9C12_RS03850	COG0028	Belongs to the TPP enzyme family
D9C12_RS03875	COG1914	H( )-stimulated, divalent metal cation uptake system
D9C12_RS03880	COG2261	transglycosylase associated protein
D9C12_RS03885	COG4876	unkown
D9C12_RS03890	COG2217	Heavy metal translocating P-type atpase
D9C12_RS03895	COG3729	General stress protein
D9C12_RS03900	COG0662	Cupin 2, conserved barrel domain protein
D9C12_RS03905	COG2329	Antibiotic biosynthesis monooxygenase
D9C12_RS03910	COG3546	catalase activity
D9C12_RS03915	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
D9C12_RS03920	COG3290	protein histidine kinase activity
D9C12_RS03925	COG4565	transcriptional regulatory protein
D9C12_RS03930	COG1301	dicarboxylic acid transport
D9C12_RS03935	COG0628	permease
D9C12_RS03940	COG1131	(ABC) transporter
D9C12_RS03945	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
D9C12_RS03955	COG1960	acyl-CoA dehydrogenase activity
D9C12_RS03970	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
D9C12_RS03975	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9C12_RS03980	COG1181	Belongs to the D-alanine--D-alanine ligase family
D9C12_RS03985	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
D9C12_RS03995	COG0513	Belongs to the DEAD box helicase family
D9C12_RS04000	COG3402	PFAM membrane-flanked domain
D9C12_RS04005	COG3428	Bacterial PH domain
D9C12_RS04010	COG0705	Rhomboid family
D9C12_RS04015	COG0736	holo-[acyl-carrier-protein] synthase activity
D9C12_RS04020	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
D9C12_RS04025	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
D9C12_RS04030	COG0864	Transcriptional regulator
D9C12_RS04035	COG2337	Toxic component of a toxin-antitoxin (TA) module
D9C12_RS04040	COG1366	Belongs to the anti-sigma-factor antagonist family
D9C12_RS04045	COG1366	Belongs to the anti-sigma-factor antagonist family
D9C12_RS04050	COG2172	sigma factor antagonist activity
D9C12_RS04055	COG2208	phosphoserine phosphatase activity
D9C12_RS04060	COG1366	Belongs to the anti-sigma-factor antagonist family
D9C12_RS04065	COG2172	sigma factor antagonist activity
D9C12_RS04070	COG1191	sigma factor activity
D9C12_RS04075	COG2208	phosphoserine phosphatase activity
D9C12_RS04080	COG2183	response to ionizing radiation
D9C12_RS04090	COG3091	SprT-like family
D9C12_RS04140	COG0583	DNA-binding transcription factor activity
D9C12_RS04145	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS04155	COG5444	nuclease activity
D9C12_RS04165	COG1476	TRANSCRIPTIONal
D9C12_RS04190	COG0693	protein deglycase activity
D9C12_RS04195	COG1278	Cold shock
D9C12_RS04200	COG1329	Transcriptional regulator
D9C12_RS04220	COG0697	spore germination
D9C12_RS04225	COG1917	Cupin 2, conserved barrel domain protein
D9C12_RS04225	COG2207	Transcriptional regulator
D9C12_RS04230	COG0697	spore germination
D9C12_RS04235	COG2207	Transcriptional regulator
D9C12_RS04235	COG3708	Transcriptional regulator
D9C12_RS04240	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D9C12_RS04250	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
D9C12_RS04270	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9C12_RS04275	COG1309	transcriptional regulator
D9C12_RS04280	COG0697	spore germination
D9C12_RS04285	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D9C12_RS04290	COG2030	dehydratase
D9C12_RS04295	COG3545	Serine hydrolase
D9C12_RS04300	COG1733	regulation of RNA biosynthetic process
D9C12_RS04305	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9C12_RS04310	COG0640	Transcriptional regulator
D9C12_RS04315	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
D9C12_RS04325	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS04330	COG0697	spore germination
D9C12_RS04335	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D9C12_RS04340	COG0076	glutamate decarboxylase activity
D9C12_RS04345	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D9C12_RS04350	COG0640	Transcriptional regulator
D9C12_RS04370	COG4585	Histidine kinase
D9C12_RS04375	COG2197	response regulator
D9C12_RS04380	COG2409	Drug exporters of the RND superfamily
D9C12_RS04390	COG0596	Alpha beta hydrolase
D9C12_RS04395	COG1811	Na channel or pump
D9C12_RS04400	COG4978	Transcriptional regulator
D9C12_RS04400	COG0789	Transcriptional regulator
D9C12_RS04405	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
D9C12_RS04410	COG0778	Nitroreductase
D9C12_RS04415	COG0346	lactoylglutathione lyase activity
D9C12_RS04420	COG2259	Doxx family
D9C12_RS04425	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9C12_RS04440	COG2323	membrane
D9C12_RS04445	COG2323	membrane
D9C12_RS04450	COG0071	Belongs to the small heat shock protein (HSP20) family
D9C12_RS04465	COG1309	transcriptional regulator
D9C12_RS04475	COG0456	acetyltransferase
D9C12_RS04480	COG0488	(ABC) transporter
D9C12_RS04485	COG1113	amino acid transport
D9C12_RS04490	COG2318	DinB family
D9C12_RS04495	COG1846	Transcriptional regulator
D9C12_RS04500	COG1033	growth of symbiont in host cell
D9C12_RS04500	COG2409	Drug exporters of the RND superfamily
D9C12_RS04505	COG0778	Nitroreductase
D9C12_RS04510	COG1846	Transcriptional regulator
D9C12_RS04515	COG2814	Major facilitator Superfamily
D9C12_RS04520	COG0730	response to heat
D9C12_RS04525	COG1802	Transcriptional regulator
D9C12_RS04530	COG3858	chitin binding
D9C12_RS04530	COG1388	LysM domain
D9C12_RS04535	COG1819	glycosyl
D9C12_RS04545	COG1785	Belongs to the alkaline phosphatase family
D9C12_RS04550	COG5646	InterPro IPR014922
D9C12_RS04560	COG0454	-acetyltransferase
D9C12_RS04565	COG1078	dGTPase activity
D9C12_RS04570	COG1388	LysM domain
D9C12_RS04575	COG2814	Major facilitator Superfamily
D9C12_RS04580	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9C12_RS04595	COG2723	6-phospho-beta-galactosidase activity
D9C12_RS04600	COG2188	Transcriptional regulator
D9C12_RS04605	COG1940	carbohydrate kinase activity
D9C12_RS04615	COG4124	Belongs to the glycosyl hydrolase 26 family
D9C12_RS04660	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
D9C12_RS04665	COG0802	atpase or kinase
D9C12_RS04670	COG1214	PFAM Peptidase M22, glycoprotease
D9C12_RS04675	COG0456	acetyltransferase
D9C12_RS04680	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
D9C12_RS04690	COG0488	(ABC) transporter
D9C12_RS04695	COG0315	cyclic pyranopterin monophosphate synthase activity
D9C12_RS04700	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
D9C12_RS04705	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
D9C12_RS04710	COG0805	protein transport
D9C12_RS04725	COG1266	CAAX protease self-immunity
D9C12_RS04735	COG0459	protein refolding
D9C12_RS04740	COG4974	Belongs to the 'phage' integrase family
D9C12_RS04745	COG2856	Zn peptidase
D9C12_RS04750	COG1396	sequence-specific DNA binding
D9C12_RS04810	COG3935	DnaD domain protein
D9C12_RS04815	COG1484	DNA-dependent DNA replication
D9C12_RS04820	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
D9C12_RS04860	COG3677	Transposase
D9C12_RS04950	COG3953	SLT domain
D9C12_RS04950	COG5280	Phage tail tape measure protein TP901
D9C12_RS04960	COG1705	Flagellar rod assembly protein muramidase FlgJ
D9C12_RS04995	COG5632	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS04995	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS04995	COG1388	LysM domain
D9C12_RS05005	COG5444	nuclease activity
D9C12_RS05060	COG0457	Tetratricopeptide repeat
D9C12_RS05065	COG1063	alcohol dehydrogenase
D9C12_RS05070	COG2211	Major facilitator Superfamily
D9C12_RS05075	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9C12_RS05080	COG1842	Phage shock protein A
D9C12_RS05085	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
D9C12_RS05090	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
D9C12_RS05095	COG4260	virion core protein, lumpy skin disease virus
D9C12_RS05105	COG2814	Major facilitator Superfamily
D9C12_RS05110	COG1063	alcohol dehydrogenase
D9C12_RS05115	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D9C12_RS05120	COG0823	Involved in the tonB-independent uptake of proteins
D9C12_RS05140	COG2267	carboxylic ester hydrolase activity
D9C12_RS05150	COG2132	Multicopper oxidase
D9C12_RS05155	COG1113	amino acid transport
D9C12_RS05165	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
D9C12_RS05170	COG0714	Associated with various cellular activities
D9C12_RS05175	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
D9C12_RS05180	COG1305	Transglutaminase-like
D9C12_RS05185	COG0519	Catalyzes the synthesis of GMP from XMP
D9C12_RS05185	COG0518	GMP synthase (glutamine-hydrolyzing) activity
D9C12_RS05200	COG2252	PERMEase
D9C12_RS05205	COG3064	Membrane
D9C12_RS05220	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
D9C12_RS05230	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
D9C12_RS05235	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
D9C12_RS05240	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
D9C12_RS05245	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
D9C12_RS05250	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
D9C12_RS05255	COG0047	phosphoribosylformylglycinamidine synthase activity
D9C12_RS05260	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
D9C12_RS05265	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
D9C12_RS05270	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
D9C12_RS05275	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
D9C12_RS05280	COG0138	bifunctional purine biosynthesis protein purh
D9C12_RS05285	COG0151	Belongs to the GarS family
D9C12_RS05290	COG1522	sequence-specific DNA binding
D9C12_RS05305	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
D9C12_RS05310	COG1470	cell adhesion involved in biofilm formation
D9C12_RS05315	COG4496	protein, YerC YecD
D9C12_RS05320	COG0069	glutamate synthase activity
D9C12_RS05325	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
D9C12_RS05330	COG0210	DNA helicase
D9C12_RS05335	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
D9C12_RS05345	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D9C12_RS05350	COG1285	pathogenesis
D9C12_RS05355	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9C12_RS05360	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
D9C12_RS05365	COG0154	amidase activity
D9C12_RS05370	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
D9C12_RS05375	COG1309	transcriptional regulator
D9C12_RS05380	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D9C12_RS05385	COG1597	lipid kinase activity
D9C12_RS05390	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
D9C12_RS05420	COG0457	Tetratricopeptide repeat
D9C12_RS05440	COG5444	nuclease activity
D9C12_RS05450	COG3586	endonuclease activity
D9C12_RS05460	COG0457	Tetratricopeptide repeat
D9C12_RS05470	COG0217	transcriptional regulatory protein
D9C12_RS05480	COG1309	transcriptional regulator
D9C12_RS05485	COG3631	Ketosteroid isomerase-related protein
D9C12_RS05490	COG0702	epimerase
D9C12_RS05505	COG3546	catalase activity
D9C12_RS05510	COG0454	-acetyltransferase
D9C12_RS05520	COG5578	integral membrane protein
D9C12_RS05525	COG2972	Histidine kinase
D9C12_RS05535	COG1653	transport
D9C12_RS05545	COG0395	ABC-type sugar transport system, permease component
D9C12_RS05550	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
D9C12_RS05555	COG2207	Transcriptional regulator
D9C12_RS05560	COG2755	lipolytic protein G-D-S-L family
D9C12_RS05570	COG5578	integral membrane protein
D9C12_RS05580	COG3401	FG-GAP repeat protein
D9C12_RS05585	COG2755	lipolytic protein G-D-S-L family
D9C12_RS05590	COG1874	Beta-galactosidase
D9C12_RS05600	COG1653	transport
D9C12_RS05605	COG4209	transmembrane transport
D9C12_RS05610	COG0395	ABC-type sugar transport system, permease component
D9C12_RS05615	COG1486	melibiose metabolic process
D9C12_RS05620	COG2323	membrane
D9C12_RS05625	COG2329	Antibiotic biosynthesis monooxygenase
D9C12_RS05630	COG0346	lactoylglutathione lyase activity
D9C12_RS05645	COG5583	Uncharacterized small protein (DUF2292)
D9C12_RS05650	COG0670	Belongs to the BI1 family
D9C12_RS05655	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D9C12_RS05660	COG1715	Restriction endonuclease
D9C12_RS05670	COG2124	cytochrome p450
D9C12_RS05670	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
D9C12_RS05675	COG1368	sulfuric ester hydrolase activity
D9C12_RS05680	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
D9C12_RS05685	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D9C12_RS05690	COG1442	glycosyl transferase family 8
D9C12_RS05695	COG1216	Glycosyl transferase, family 2
D9C12_RS05700	COG1442	glycosyl transferase family 8
D9C12_RS05705	COG2223	nitrite transmembrane transporter activity
D9C12_RS05710	COG1011	Hydrolase
D9C12_RS05715	COG0531	amino acid
D9C12_RS05720	COG1012	belongs to the aldehyde dehydrogenase family
D9C12_RS05725	COG0840	transmembrane signaling receptor activity
D9C12_RS05730	COG0488	(ABC) transporter
D9C12_RS05740	COG0789	Transcriptional regulator
D9C12_RS05745	COG2814	Major facilitator Superfamily
D9C12_RS05765	COG0488	(ABC) transporter
D9C12_RS05770	COG0513	Belongs to the DEAD box helicase family
D9C12_RS05775	COG0456	acetyltransferase
D9C12_RS05780	COG3328	transposase activity
D9C12_RS05790	COG2130	NADP-dependent
D9C12_RS05795	COG1120	ATPase activity
D9C12_RS05800	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9C12_RS05805	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9C12_RS05810	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
D9C12_RS05825	COG3866	Pectate lyase
D9C12_RS05830	COG0471	metal ion transport
D9C12_RS05835	COG3290	protein histidine kinase activity
D9C12_RS05840	COG4565	transcriptional regulatory protein
D9C12_RS05845	COG3181	Tripartite tricarboxylate transporter family receptor
D9C12_RS05850	COG2851	Citrate transporter
D9C12_RS05855	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9C12_RS05860	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
D9C12_RS05865	COG1254	Belongs to the acylphosphatase family
D9C12_RS05870	COG2258	MOSC domain
D9C12_RS05890	COG0024	Methionine aminopeptidase
D9C12_RS05895	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9C12_RS05895	COG1263	PTS System
D9C12_RS05900	COG1368	sulfuric ester hydrolase activity
D9C12_RS05925	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9C12_RS05925	COG1263	PTS System
D9C12_RS05930	COG0366	Alpha amylase catalytic
D9C12_RS05935	COG2188	Transcriptional regulator
D9C12_RS05940	COG0778	Nitroreductase
D9C12_RS05945	COG0737	Belongs to the 5'-nucleotidase family
D9C12_RS05950	COG0693	protein deglycase activity
D9C12_RS05955	COG2814	Major facilitator Superfamily
D9C12_RS05960	COG4840	Belongs to the UPF0435 family
D9C12_RS05965	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
D9C12_RS05970	COG4980	gas vesicle protein
D9C12_RS05975	COG1295	ribonuclease BN
D9C12_RS05980	COG0477	Major facilitator Superfamily
D9C12_RS05985	COG0387	Pfam Sodium calcium exchanger
D9C12_RS05995	COG0668	transmembrane transport
D9C12_RS06000	COG0535	radical SAM domain protein
D9C12_RS06010	COG0726	polysaccharide deacetylase
D9C12_RS06015	COG2084	Dehydrogenase
D9C12_RS06020	COG0598	Magnesium transport protein CorA
D9C12_RS06030	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
D9C12_RS06040	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D9C12_RS06045	COG4637	Psort location Cytoplasmic, score
D9C12_RS06055	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
D9C12_RS06060	COG0022	dehydrogenase e1 component
D9C12_RS06065	COG0508	dehydrogenase complex catalyzes the overall conversion of
D9C12_RS06075	COG3284	Transcriptional regulator
D9C12_RS06085	COG1742	UPF0060 membrane protein
D9C12_RS06110	COG4842	Belongs to the WXG100 family
D9C12_RS06115	COG1486	melibiose metabolic process
D9C12_RS06120	COG1737	Transcriptional regulator
D9C12_RS06125	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9C12_RS06125	COG1263	PTS System
D9C12_RS06130	COG1132	(ABC) transporter
D9C12_RS06135	COG1132	(ABC) transporter
D9C12_RS06140	COG2259	Doxx family
D9C12_RS06145	COG2514	catechol 2,3-dioxygenase activity
D9C12_RS06150	COG4585	Histidine kinase
D9C12_RS06155	COG2197	response regulator
D9C12_RS06165	COG1511	domain protein
D9C12_RS06165	COG0842	Transport permease protein
D9C12_RS06170	COG0842	Transport permease protein
D9C12_RS06175	COG1695	Transcriptional regulator
D9C12_RS06180	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
D9C12_RS06190	COG1309	transcriptional regulator
D9C12_RS06195	COG2814	Major facilitator Superfamily
D9C12_RS06200	COG2318	DinB family
D9C12_RS06210	COG1846	Transcriptional regulator
D9C12_RS06215	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
D9C12_RS06215	COG0392	lysyltransferase activity
D9C12_RS06220	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9C12_RS06225	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9C12_RS06230	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9C12_RS06235	COG0384	phenazine biosynthesis protein PhzF
D9C12_RS06240	COG0778	Nitroreductase
D9C12_RS06255	COG1090	epimerase
D9C12_RS06260	COG2137	regulation of response to DNA damage stimulus
D9C12_RS06270	COG2814	Major facilitator Superfamily
D9C12_RS06290	COG3103	Sh3 type 3 domain protein
D9C12_RS06295	COG5658	integral membrane protein
D9C12_RS06300	COG0596	Alpha beta hydrolase
D9C12_RS06305	COG0463	Glycosyl transferase, family 2
D9C12_RS06310	COG4485	Bacterial membrane protein, YfhO
D9C12_RS06315	COG1988	membrane-bound metal-dependent
D9C12_RS06320	COG1194	a g-specific adenine glycosylase
D9C12_RS06330	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS06345	COG3557	Belongs to the UPF0374 family
D9C12_RS06350	COG1132	(ABC) transporter
D9C12_RS06355	COG4129	membrane
D9C12_RS06360	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
D9C12_RS06365	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
D9C12_RS06370	COG0735	belongs to the Fur family
D9C12_RS06495	COG4326	sporulation control protein
D9C12_RS06505	COG5577	PFAM Coat F domain
D9C12_RS06510	COG3340	Belongs to the peptidase S51 family
D9C12_RS06515	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
D9C12_RS06530	COG0753	catalase activity
D9C12_RS06535	COG1116	anion transmembrane transporter activity
D9C12_RS06540	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D9C12_RS06545	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D9C12_RS06550	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D9C12_RS06560	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
D9C12_RS06570	COG1476	TRANSCRIPTIONal
D9C12_RS06580	COG3382	B3 4 domain protein
D9C12_RS06585	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
D9C12_RS06595	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
D9C12_RS06600	COG0789	Transcriptional regulator
D9C12_RS06605	COG1664	Polymer-forming cytoskeletal
D9C12_RS06610	COG1664	Polymer-forming cytoskeletal
D9C12_RS06615	COG2766	serine protein kinase
D9C12_RS06620	COG2718	Belongs to the UPF0229 family
D9C12_RS06625	COG1846	Transcriptional regulator
D9C12_RS06630	COG1566	PFAM secretion protein HlyD family protein
D9C12_RS06635	COG2814	Major facilitator Superfamily
D9C12_RS06640	COG0655	NAD(P)H dehydrogenase (quinone) activity
D9C12_RS06660	COG1725	Transcriptional regulator
D9C12_RS06665	COG1131	(ABC) transporter
D9C12_RS06670	COG1131	(ABC) transporter
D9C12_RS06675	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
D9C12_RS06680	COG1278	Cold shock
D9C12_RS06690	COG1464	Belongs to the NlpA lipoprotein family
D9C12_RS06695	COG3706	GGDEF domain
D9C12_RS06700	COG1823	symporter activity
D9C12_RS06705	COG5444	nuclease activity
D9C12_RS06730	COG0582	viral genome integration into host DNA
D9C12_RS06735	COG2946	Replication initiation factor
D9C12_RS06785	COG5644	endopeptidase inhibitor activity
D9C12_RS06790	COG0741	lytic transglycosylase activity
D9C12_RS06790	COG0791	NLP P60 protein
D9C12_RS06810	COG0457	Tetratricopeptide repeat
D9C12_RS06835	COG1525	nuclease
D9C12_RS06835	COG4085	toxin activity
D9C12_RS06835	COG0737	Belongs to the 5'-nucleotidase family
D9C12_RS06840	COG3764	Sortase (surface protein transpeptidase)
D9C12_RS06845	COG0564	pseudouridine synthase activity
D9C12_RS06855	COG0517	IMP dehydrogenase activity
D9C12_RS06860	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D9C12_RS06865	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D9C12_RS06865	COG3153	acetyltransferase
D9C12_RS06875	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D9C12_RS06880	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
D9C12_RS06885	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
D9C12_RS06890	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
D9C12_RS06895	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
D9C12_RS06900	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
D9C12_RS06905	COG4585	Histidine kinase
D9C12_RS06905	COG2203	Gaf domain
D9C12_RS06910	COG2197	response regulator
D9C12_RS06915	COG0431	NADPH-dependent FMN reductase
D9C12_RS06930	COG0791	NLP P60 protein
D9C12_RS06930	COG1388	LysM domain
D9C12_RS06935	COG1959	2 iron, 2 sulfur cluster binding
D9C12_RS06945	COG0668	transmembrane transport
D9C12_RS06950	COG2719	SpoVR family
D9C12_RS06955	COG1785	Belongs to the alkaline phosphatase family
D9C12_RS06960	COG1388	LysM domain
D9C12_RS06960	COG0791	NLP P60 protein
D9C12_RS06965	COG0583	DNA-binding transcription factor activity
D9C12_RS06970	COG0372	Belongs to the citrate synthase family
D9C12_RS06975	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS06985	COG0531	amino acid
D9C12_RS06990	COG0733	neurotransmitter:sodium symporter activity
D9C12_RS07000	COG0456	acetyltransferase
D9C12_RS07015	COG1595	DNA-templated transcription, initiation
D9C12_RS07020	COG0667	Aldo Keto reductase
D9C12_RS07025	COG0204	Acyl-transferase
D9C12_RS07030	COG1253	flavin adenine dinucleotide binding
D9C12_RS07035	COG0789	Transcriptional regulator
D9C12_RS07045	COG1253	flavin adenine dinucleotide binding
D9C12_RS07050	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
D9C12_RS07055	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
D9C12_RS07060	COG0584	glycerophosphoryl diester phosphodiesterase
D9C12_RS07070	COG0668	transmembrane transport
D9C12_RS07075	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
D9C12_RS07080	COG0726	polysaccharide deacetylase
D9C12_RS07085	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D9C12_RS07090	COG1757	Na H antiporter
D9C12_RS07095	COG0589	response to stress
D9C12_RS07105	COG1132	(ABC) transporter
D9C12_RS07110	COG1132	(ABC) transporter
D9C12_RS07115	COG0702	epimerase
D9C12_RS07135	COG0189	ligase activity
D9C12_RS07140	COG0189	ligase activity
D9C12_RS07145	COG4399	Belongs to the UPF0754 family
D9C12_RS07150	COG3679	Belongs to the UPF0342 family
D9C12_RS07160	COG0561	phosphatase activity
D9C12_RS07165	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D9C12_RS07170	COG0475	glutathione-regulated potassium exporter activity
D9C12_RS07175	COG0490	domain, Protein
D9C12_RS07185	COG1024	Enoyl-CoA hydratase
D9C12_RS07195	COG4152	abc transporter atp-binding protein
D9C12_RS07200	COG1668	transmembrane transport
D9C12_RS07205	COG0420	3'-5' exonuclease activity
D9C12_RS07210	COG4717	serine-type aminopeptidase activity
D9C12_RS07215	COG3481	metal-dependent phosphohydrolase, HD sub domain
D9C12_RS07225	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D9C12_RS07255	COG1846	Transcriptional regulator
D9C12_RS07260	COG4980	gas vesicle protein
D9C12_RS07275	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
D9C12_RS07280	COG0537	adenosine 5'-monophosphoramidase activity
D9C12_RS07285	COG1131	(ABC) transporter
D9C12_RS07290	COG4473	ABC transporter
D9C12_RS07300	COG1473	amidohydrolase
D9C12_RS07305	COG3069	C4-dicarboxylate transmembrane transporter activity
D9C12_RS07315	COG2329	Antibiotic biosynthesis monooxygenase
D9C12_RS07320	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D9C12_RS07325	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
D9C12_RS07330	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
D9C12_RS07335	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
D9C12_RS07340	COG1309	transcriptional regulator
D9C12_RS07345	COG1511	domain protein
D9C12_RS07360	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D9C12_RS07365	COG4377	Putative membrane peptidase family (DUF2324)
D9C12_RS07375	COG1363	Peptidase, m42
D9C12_RS07380	COG4405	Protein conserved in bacteria
D9C12_RS07385	COG1301	dicarboxylic acid transport
D9C12_RS07395	COG1234	tRNA 3'-trailer cleavage
D9C12_RS07400	COG0095	Lipoate-protein ligase
D9C12_RS07405	COG0702	epimerase
D9C12_RS07410	COG0318	PFAM AMP-dependent synthetase and ligase
D9C12_RS07425	COG0501	Belongs to the peptidase M48B family
D9C12_RS07435	COG0456	acetyltransferase
D9C12_RS07440	COG0604	alcohol dehydrogenase
D9C12_RS07445	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
D9C12_RS07455	COG0406	alpha-ribazole phosphatase activity
D9C12_RS07460	COG0183	Belongs to the thiolase family
D9C12_RS07465	COG0318	PFAM AMP-dependent synthetase and ligase
D9C12_RS07470	COG1268	BioY protein
D9C12_RS07475	COG0840	transmembrane signaling receptor activity
D9C12_RS07485	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS07495	COG4903	ComK protein
D9C12_RS07500	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS07510	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9C12_RS07525	COG0398	Pfam SNARE associated Golgi protein
D9C12_RS07530	COG0681	Belongs to the peptidase S26 family
D9C12_RS07535	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D9C12_RS07540	COG1846	Transcriptional regulator
D9C12_RS07560	COG0738	Major facilitator superfamily
D9C12_RS07565	COG0673	inositol 2-dehydrogenase activity
D9C12_RS07570	COG0561	phosphatase activity
D9C12_RS07575	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
D9C12_RS07580	COG1609	Transcriptional regulator
D9C12_RS07585	COG3180	Ammonia monooxygenase
D9C12_RS07590	COG2814	Major facilitator Superfamily
D9C12_RS07590	COG0477	Major facilitator Superfamily
D9C12_RS07595	COG4533	DNA binding
D9C12_RS07605	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
D9C12_RS07610	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
D9C12_RS07615	COG1074	ATP-dependent DNA helicase activity
D9C12_RS07620	COG0420	3'-5' exonuclease activity
D9C12_RS07625	COG0419	ATPase involved in DNA repair
D9C12_RS07630	COG1403	HNH endonuclease
D9C12_RS07670	COG5337	Spore coat protein CotH
D9C12_RS07675	COG0179	Fumarylacetoacetate (FAA) hydrolase
D9C12_RS07685	COG1404	Belongs to the peptidase S8 family
D9C12_RS07700	COG0367	asparagine synthase
D9C12_RS07705	COG1562	ergosterol biosynthetic process
D9C12_RS07710	COG0534	Mate efflux family protein
D9C12_RS07715	COG1917	Cupin 2, conserved barrel domain protein
D9C12_RS07715	COG2207	Transcriptional regulator
D9C12_RS07720	COG1609	Transcriptional regulator
D9C12_RS07725	COG0673	inositol 2-dehydrogenase activity
D9C12_RS07730	COG2318	DinB family
D9C12_RS07735	COG1279	arginine transmembrane transporter activity
D9C12_RS07740	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D9C12_RS07745	COG1357	PFAM Pentapeptide repeats (8 copies)
D9C12_RS07750	COG2267	carboxylic ester hydrolase activity
D9C12_RS07760	COG2153	protein acetylation
D9C12_RS07765	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
D9C12_RS07765	COG0646	methionine synthase
D9C12_RS07770	COG1666	GTP binding
D9C12_RS07775	COG2996	Protein conserved in bacteria
D9C12_RS07795	COG1695	Transcriptional regulator
D9C12_RS07810	COG3227	Zinc metalloprotease (Elastase)
D9C12_RS07815	COG1307	EDD domain protein, DegV family
D9C12_RS07820	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9C12_RS07835	COG0561	phosphatase activity
D9C12_RS07840	COG1073	alpha beta
D9C12_RS07845	COG2151	metal-sulfur cluster biosynthetic enzyme
D9C12_RS07855	COG0277	FAD linked oxidase domain protein
D9C12_RS07865	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
D9C12_RS07870	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
D9C12_RS07880	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D9C12_RS07885	COG0505	Belongs to the CarA family
D9C12_RS07890	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
D9C12_RS07895	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
D9C12_RS07915	COG2267	carboxylic ester hydrolase activity
D9C12_RS07925	COG1744	ABC transporter substrate-binding protein PnrA-like
D9C12_RS07940	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D9C12_RS07945	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D9C12_RS07950	COG5504	Zn-dependent protease
D9C12_RS07955	COG0444	Belongs to the ABC transporter superfamily
D9C12_RS07960	COG4608	Belongs to the ABC transporter superfamily
D9C12_RS07970	COG0601	transmembrane transport
D9C12_RS07975	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9C12_RS07985	COG0180	Tryptophanyl-tRNA synthetase
D9C12_RS07990	COG4166	transmembrane transport
D9C12_RS07995	COG0601	transmembrane transport
D9C12_RS08000	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9C12_RS08005	COG0444	Belongs to the ABC transporter superfamily
D9C12_RS08010	COG4608	Belongs to the ABC transporter superfamily
D9C12_RS08015	COG2814	Major facilitator Superfamily
D9C12_RS08025	COG1393	Belongs to the ArsC family
D9C12_RS08030	COG0861	Integral membrane protein TerC family
D9C12_RS08040	COG4862	establishment of competence for transformation
D9C12_RS08050	COG4469	Competence protein
D9C12_RS08055	COG1164	Oligoendopeptidase f
D9C12_RS08070	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
D9C12_RS08075	COG2346	COG2346, Truncated hemoglobins
D9C12_RS08080	COG0741	lytic transglycosylase activity
D9C12_RS08085	COG4116	CYTH
D9C12_RS08095	COG2357	RelA SpoT domain protein
D9C12_RS08100	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
D9C12_RS08105	COG0564	pseudouridine synthase activity
D9C12_RS08110	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
D9C12_RS08115	COG0569	domain protein
D9C12_RS08115	COG0475	glutathione-regulated potassium exporter activity
D9C12_RS08120	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
D9C12_RS08125	COG0352	thiamine-phosphate diphosphorylase activity
D9C12_RS08130	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D9C12_RS08135	COG2104	thiamine diphosphate biosynthetic process
D9C12_RS08140	COG2022	thiamine diphosphate biosynthetic process
D9C12_RS08145	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D9C12_RS08150	COG0351	phosphomethylpyrimidine kinase
D9C12_RS08155	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
D9C12_RS08210	COG0210	DNA helicase
D9C12_RS08220	COG2153	protein acetylation
D9C12_RS08225	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
D9C12_RS08230	COG2382	esterase
D9C12_RS08235	COG0626	cystathionine gamma-synthase activity
D9C12_RS08240	COG0626	cystathionine gamma-synthase activity
D9C12_RS08245	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS08250	COG5505	Protein of unknown function (DUF819)
D9C12_RS08285	COG1396	sequence-specific DNA binding
D9C12_RS08410	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
D9C12_RS08420	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9C12_RS08420	COG3711	transcriptional antiterminator
D9C12_RS08425	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9C12_RS08425	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9C12_RS08425	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9C12_RS08430	COG1482	cell wall glycoprotein biosynthetic process
D9C12_RS08445	COG3328	transposase activity
D9C12_RS08450	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS08460	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D9C12_RS08480	COG0109	protoheme IX farnesyltransferase activity
D9C12_RS08490	COG0726	polysaccharide deacetylase
D9C12_RS08510	COG2205	protein histidine kinase activity
D9C12_RS08520	COG3383	formate dehydrogenase (NAD+) activity
D9C12_RS08525	COG2427	Protein of unknown function (DUF1641)
D9C12_RS08535	COG1051	belongs to the nudix hydrolase family
D9C12_RS08545	COG2124	cytochrome p450
D9C12_RS08550	COG1819	glycosyl
D9C12_RS08560	COG1587	Uroporphyrinogen-III synthase
D9C12_RS08570	COG0390	transport system, permease component
D9C12_RS08575	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
D9C12_RS08580	COG0697	spore germination
D9C12_RS08595	COG1252	NADH dehydrogenase
D9C12_RS08600	COG1904	glucuronate isomerase
D9C12_RS08610	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
D9C12_RS08615	COG1063	alcohol dehydrogenase
D9C12_RS08620	COG1312	Catalyzes the dehydration of D-mannonate
D9C12_RS08625	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS08630	COG2271	Major facilitator Superfamily
D9C12_RS08635	COG1609	Transcriptional regulator
D9C12_RS08640	COG0246	Mannitol dehydrogenase
D9C12_RS08645	COG2721	sulfolactate sulfo-lyase activity
D9C12_RS08650	COG0730	response to heat
D9C12_RS08660	COG2318	DinB family
D9C12_RS08680	COG0457	Tetratricopeptide repeat
D9C12_RS08695	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS08695	COG1388	LysM domain
D9C12_RS08695	COG5632	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS08705	COG4195	phage-related replication protein
D9C12_RS08710	COG3546	catalase activity
D9C12_RS08715	COG2856	Zn peptidase
D9C12_RS08720	COG1396	sequence-specific DNA binding
D9C12_RS08730	COG1522	sequence-specific DNA binding
D9C12_RS08735	COG1484	DNA-dependent DNA replication
D9C12_RS08755	COG1595	DNA-templated transcription, initiation
D9C12_RS08760	COG5484	DNA packaging
D9C12_RS08760	COG3728	DNA packaging
D9C12_RS08765	COG1783	phage Terminase large subunit
D9C12_RS08770	COG5518	Phage portal protein
D9C12_RS08775	COG0338	D12 class N6 adenine-specific DNA methyltransferase
D9C12_RS08780	COG4653	Phage capsid family
D9C12_RS08830	COG3953	SLT domain
D9C12_RS08830	COG3953	SLT domain
D9C12_RS08830	COG3953	SLT domain
D9C12_RS08830	COG5412	phage tail tape measure protein
D9C12_RS08830	COG5412	phage tail tape measure protein
D9C12_RS08830	COG5412	phage tail tape measure protein
D9C12_RS08835	COG1652	LysM domain
D9C12_RS08840	COG4193	domain, Protein
D9C12_RS08850	COG3628	GPW Gp25 family protein
D9C12_RS08855	COG3299	homolog of phage Mu protein gp47
D9C12_RS08860	COG3778	Protein conserved in bacteria
D9C12_RS08900	COG5632	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS08900	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS08920	COG0306	phosphate transporter
D9C12_RS08925	COG1392	Phosphate transport regulator
D9C12_RS08930	COG0531	amino acid
D9C12_RS08935	COG0346	lactoylglutathione lyase activity
D9C12_RS08940	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
D9C12_RS08945	COG0463	Glycosyl transferase, family 2
D9C12_RS08950	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9C12_RS08955	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D9C12_RS08960	COG2362	D-Aminopeptidase
D9C12_RS08965	COG0601	transmembrane transport
D9C12_RS08970	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9C12_RS08975	COG0444	Belongs to the ABC transporter superfamily
D9C12_RS08980	COG4166	transmembrane transport
D9C12_RS08985	COG1619	proteins homologs of microcin C7 resistance protein MccF
D9C12_RS08990	COG4948	Mandelate Racemase Muconate Lactonizing
D9C12_RS08995	COG0791	NLP P60 protein
D9C12_RS09000	COG4608	Belongs to the ABC transporter superfamily
D9C12_RS09005	COG2706	6-phosphogluconolactonase activity
D9C12_RS09015	COG1607	acyl-coa hydrolase
D9C12_RS09020	COG1017	nitric oxide dioxygenase activity
D9C12_RS09020	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D9C12_RS09030	COG2323	membrane
D9C12_RS09035	COG2318	DinB family
D9C12_RS09040	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS09045	COG2076	Multidrug Resistance protein
D9C12_RS09050	COG2076	Multidrug Resistance protein
D9C12_RS09055	COG0788	formyltetrahydrofolate deformylase activity
D9C12_RS09060	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
D9C12_RS09065	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
D9C12_RS09070	COG1764	response to oxidative stress
D9C12_RS09075	COG1846	Transcriptional regulator
D9C12_RS09080	COG1764	response to oxidative stress
D9C12_RS09090	COG0590	tRNA wobble adenosine to inosine editing
D9C12_RS09095	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
D9C12_RS09100	COG1404	Belongs to the peptidase S8 family
D9C12_RS09105	COG1366	Belongs to the anti-sigma-factor antagonist family
D9C12_RS09110	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
D9C12_RS09115	COG1122	ATPase activity
D9C12_RS09120	COG4721	ABC-type cobalt transport system, permease component
D9C12_RS09130	COG0745	RESPONSE REGULATOR receiver
D9C12_RS09135	COG5002	protein histidine kinase activity
D9C12_RS09135	COG3850	Histidine kinase
D9C12_RS09140	COG3212	peptidase
D9C12_RS09145	COG3212	peptidase
D9C12_RS09160	COG2239	Acts as a magnesium transporter
D9C12_RS09165	COG0789	Transcriptional regulator
D9C12_RS09180	COG1846	Transcriptional regulator
D9C12_RS09185	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
D9C12_RS09190	COG0726	polysaccharide deacetylase
D9C12_RS09195	COG1408	metallophosphoesterase
D9C12_RS09205	COG0463	Glycosyl transferase, family 2
D9C12_RS09210	COG1793	dna ligase
D9C12_RS09210	COG3285	dna ligase
D9C12_RS09215	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
D9C12_RS09220	COG3300	MHYT domain
D9C12_RS09220	COG5001	Diguanylate cyclase
D9C12_RS09225	COG0586	Pfam SNARE associated Golgi protein
D9C12_RS09230	COG0861	Integral membrane protein TerC family
D9C12_RS09235	COG1191	sigma factor activity
D9C12_RS09255	COG0501	Belongs to the peptidase M48B family
D9C12_RS09260	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D9C12_RS09275	COG3594	Acyltransferase
D9C12_RS09280	COG5002	protein histidine kinase activity
D9C12_RS09285	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D9C12_RS09295	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
D9C12_RS09300	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
D9C12_RS09305	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D9C12_RS09310	COG0436	Aminotransferase
D9C12_RS09315	COG1850	ribulose-bisphosphate carboxylase activity
D9C12_RS09320	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
D9C12_RS09325	COG0235	Class ii aldolase
D9C12_RS09330	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
D9C12_RS09335	COG3339	Conserved Protein
D9C12_RS09350	COG3852	Histidine kinase
D9C12_RS09355	COG1846	Transcriptional regulator
D9C12_RS09360	COG1360	Flagellar Motor Protein
D9C12_RS09365	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
D9C12_RS09370	COG0542	response to heat
D9C12_RS09375	COG3949	Membrane
D9C12_RS09380	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
D9C12_RS09385	COG0720	synthase
D9C12_RS09390	COG0602	queuosine metabolic process
D9C12_RS09395	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
D9C12_RS09405	COG4873	Protein conserved in bacteria
D9C12_RS09415	COG3773	Cell wall hydrolase
D9C12_RS09420	COG2244	polysaccharide biosynthetic process
D9C12_RS09425	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9C12_RS09430	COG2217	Heavy metal translocating P-type atpase
D9C12_RS09440	COG0006	proline dipeptidase activity
D9C12_RS09445	COG1609	Transcriptional regulator
D9C12_RS09455	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9C12_RS09455	COG1263	PTS System
D9C12_RS09455	COG2190	(PTS) system
D9C12_RS09460	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9C12_RS09465	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D9C12_RS09475	COG1533	DNA photolyase activity
D9C12_RS09480	COG0456	acetyltransferase
D9C12_RS09485	COG0840	transmembrane signaling receptor activity
D9C12_RS09490	COG2084	Dehydrogenase
D9C12_RS09505	COG3328	transposase activity
D9C12_RS09515	COG2340	Cysteine-rich secretory protein family
D9C12_RS09520	COG0768	penicillin binding
D9C12_RS09525	COG4191	Histidine kinase
D9C12_RS09530	COG0436	Aminotransferase
D9C12_RS09540	COG0835	chemotaxis
D9C12_RS09540	COG0784	Response regulator, receiver
D9C12_RS09550	COG2814	Major facilitator Superfamily
D9C12_RS09555	COG1376	ErfK ybiS ycfS ynhG family protein
D9C12_RS09560	COG1408	metallophosphoesterase
D9C12_RS09565	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS09570	COG2200	EAL domain
D9C12_RS09575	COG4703	Protein of unknown function (DUF1797)
D9C12_RS09580	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
D9C12_RS09590	COG0517	IMP dehydrogenase activity
D9C12_RS09595	COG0583	DNA-binding transcription factor activity
D9C12_RS09600	COG0716	FMN binding
D9C12_RS09610	COG0716	FMN binding
D9C12_RS09615	COG2171	N-acyltransferase activity
D9C12_RS09620	COG1473	amidohydrolase
D9C12_RS09630	COG0668	transmembrane transport
D9C12_RS09635	COG0450	alkyl hydroperoxide reductase
D9C12_RS09640	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9C12_RS09660	COG0746	molybdenum cofactor guanylyltransferase activity
D9C12_RS09665	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D9C12_RS09670	COG0303	'Molybdopterin
D9C12_RS09675	COG1763	Mo-molybdopterin cofactor biosynthetic process
D9C12_RS09680	COG0314	molybdopterin synthase activity
D9C12_RS09685	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
D9C12_RS09690	COG1132	(ABC) transporter
D9C12_RS09695	COG1132	(ABC) transporter
D9C12_RS09705	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9C12_RS09710	COG1136	(ABC) transporter
D9C12_RS09715	COG0577	efflux transmembrane transporter activity
D9C12_RS09720	COG1349	DNA-binding transcription factor activity
D9C12_RS09725	COG1105	Belongs to the carbohydrate kinase PfkB family
D9C12_RS09730	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9C12_RS09730	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9C12_RS09730	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9C12_RS09735	COG0681	Belongs to the peptidase S26 family
D9C12_RS09745	COG0488	(ABC) transporter
D9C12_RS09750	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
D9C12_RS09760	COG2309	aminopeptidase activity
D9C12_RS09770	COG1077	Cell shape determining protein MreB Mrl
D9C12_RS09775	COG2002	toxin-antitoxin pair type II binding
D9C12_RS09780	COG3852	Histidine kinase
D9C12_RS09795	COG2105	PFAM AIG2 family protein
D9C12_RS09795	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
D9C12_RS09800	COG0569	domain protein
D9C12_RS09805	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
D9C12_RS09810	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
D9C12_RS09815	COG5503	Protein of unknown function (DUF1447)
D9C12_RS09820	COG0561	phosphatase activity
D9C12_RS09825	COG0242	peptide deformylase activity
D9C12_RS09835	COG0497	DNA recombination
D9C12_RS09840	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
D9C12_RS09845	COG0022	dehydrogenase e1 component
D9C12_RS09850	COG0508	dehydrogenase complex catalyzes the overall conversion of
D9C12_RS09855	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D9C12_RS09860	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9C12_RS09875	COG1982	Orn Lys Arg decarboxylase major
D9C12_RS09880	COG4476	Belongs to the UPF0223 family
D9C12_RS09885	COG4493	Belongs to the UPF0637 family
D9C12_RS09895	COG0483	inositol monophosphate 1-phosphatase activity
D9C12_RS09905	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
D9C12_RS09950	COG1217	gtp-binding protein TYPA
D9C12_RS09960	COG4896	Protein conserved in bacteria
D9C12_RS09970	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
D9C12_RS09975	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
D9C12_RS09980	COG2066	Belongs to the glutaminase family
D9C12_RS09985	COG4838	Belongs to the UPF0358 family
D9C12_RS09990	COG0772	Belongs to the SEDS family
D9C12_RS09995	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
D9C12_RS10005	COG1612	heme a metabolic process
D9C12_RS10010	COG0109	protoheme IX farnesyltransferase activity
D9C12_RS10015	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
D9C12_RS10015	COG2010	Cytochrome c
D9C12_RS10020	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
D9C12_RS10025	COG1845	cytochrome c oxidase, subunit III
D9C12_RS10030	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
D9C12_RS10035	COG3336	cytochrome c oxidase
D9C12_RS10045	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
D9C12_RS10050	COG2340	Cysteine-rich secretory protein family
D9C12_RS10065	COG3679	Belongs to the UPF0342 family
D9C12_RS10070	COG4471	UPF0298 protein
D9C12_RS10075	COG0742	ribosomal rna small subunit methyltransferase
D9C12_RS10080	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
D9C12_RS10085	COG3314	Sporulation integral membrane protein YlbJ
D9C12_RS10090	COG1752	Esterase of the alpha-beta hydrolase superfamily
D9C12_RS10095	COG3480	Lon protease (S16) C-terminal proteolytic domain
D9C12_RS10100	COG1323	Belongs to the UPF0348 family
D9C12_RS10110	COG1399	metal-binding, possibly nucleic acid-binding protein
D9C12_RS10125	COG0454	-acetyltransferase
D9C12_RS10130	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
D9C12_RS10135	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
D9C12_RS10140	COG2001	Belongs to the MraZ family
D9C12_RS10145	COG0275	rRNA processing
D9C12_RS10150	COG4839	cell division protein FtsL
D9C12_RS10155	COG0768	penicillin binding
D9C12_RS10160	COG0768	penicillin binding
D9C12_RS10165	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
D9C12_RS10170	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
D9C12_RS10175	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
D9C12_RS10180	COG0772	Belongs to the SEDS family
D9C12_RS10185	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
D9C12_RS10190	COG0812	UDP-N-acetylmuramate dehydrogenase activity
D9C12_RS10195	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
D9C12_RS10200	COG3879	Bacterial protein of unknown function (DUF881)
D9C12_RS10205	COG3879	Bacterial protein of unknown function (DUF881)
D9C12_RS10210	COG3856	small basic protein
D9C12_RS10215	COG0849	cell division
D9C12_RS10220	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
D9C12_RS10235	COG1191	sigma factor activity
D9C12_RS10240	COG1191	sigma factor activity
D9C12_RS10245	COG1119	ATPase activity
D9C12_RS10255	COG1873	PFAM PRC-barrel domain
D9C12_RS10260	COG1496	oxidoreductase activity
D9C12_RS10265	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
D9C12_RS10270	COG1799	cell septum assembly
D9C12_RS10275	COG0762	integral membrane protein
D9C12_RS10280	COG2302	S4 RNA-binding domain
D9C12_RS10285	COG3599	regulation of cell shape
D9C12_RS10290	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
D9C12_RS10300	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D9C12_RS10305	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
D9C12_RS10310	COG0564	pseudouridine synthase activity
D9C12_RS10315	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
D9C12_RS10320	COG2233	PERMEase
D9C12_RS10325	COG0540	Belongs to the ATCase OTCase family
D9C12_RS10330	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
D9C12_RS10335	COG0505	Belongs to the CarA family
D9C12_RS10340	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
D9C12_RS10345	COG0543	2 iron, 2 sulfur cluster binding
D9C12_RS10350	COG0167	dihydroorotate dehydrogenase activity
D9C12_RS10355	COG0284	orotidine-5'-phosphate decarboxylase activity
D9C12_RS10360	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
D9C12_RS10365	COG0175	sulfate reduction
D9C12_RS10370	COG0306	phosphate transporter
D9C12_RS10375	COG2046	Belongs to the sulfate adenylyltransferase family
D9C12_RS10380	COG0529	Catalyzes the synthesis of activated sulfate
D9C12_RS10385	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
D9C12_RS10390	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
D9C12_RS10395	COG1648	precorrin-2 dehydrogenase activity
D9C12_RS10410	COG1561	YicC-like family, N-terminal region
D9C12_RS10420	COG0194	GDP metabolic process
D9C12_RS10425	COG1758	RNA polymerase activity
D9C12_RS10430	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
D9C12_RS10435	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
D9C12_RS10440	COG0242	peptide deformylase activity
D9C12_RS10445	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
D9C12_RS10450	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
D9C12_RS10450	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
D9C12_RS10455	COG0820	rRNA (adenine-C2-)-methyltransferase activity
D9C12_RS10460	COG0631	protein serine/threonine phosphatase activity
D9C12_RS10465	COG2815	serine threonine protein kinase
D9C12_RS10465	COG0515	serine threonine protein kinase
D9C12_RS10470	COG1162	GTPase activity
D9C12_RS10475	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D9C12_RS10480	COG1564	THIamine pyrophosphokinase
D9C12_RS10490	COG0227	Belongs to the bacterial ribosomal protein bL28 family
D9C12_RS10495	COG1302	Protein conserved in bacteria
D9C12_RS10500	COG1461	Dihydroxyacetone kinase
D9C12_RS10505	COG1760	l-serine dehydratase
D9C12_RS10510	COG1760	l-serine dehydratase
D9C12_RS10515	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
D9C12_RS10520	COG1349	DNA-binding transcription factor activity
D9C12_RS10520	COG2050	protein possibly involved in aromatic compounds catabolism
D9C12_RS10525	COG0416	fatty acid biosynthetic process
D9C12_RS10530	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
D9C12_RS10535	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS10545	COG0571	ribonuclease III activity
D9C12_RS10550	COG1196	nuclear chromosome segregation
D9C12_RS10555	COG0552	protein localization to endoplasmic reticulum
D9C12_RS10565	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
D9C12_RS10570	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
D9C12_RS10575	COG0228	four-way junction DNA binding
D9C12_RS10580	COG1837	Belongs to the UPF0109 family
D9C12_RS10590	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
D9C12_RS10595	COG0336	Belongs to the RNA methyltransferase TrmD family
D9C12_RS10600	COG0335	large ribosomal subunit rRNA binding
D9C12_RS10605	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
D9C12_RS10610	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
D9C12_RS10620	COG2257	FlhB HrpN YscU SpaS Family
D9C12_RS10625	COG0045	succinate-CoA ligase (ADP-forming) activity
D9C12_RS10630	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D9C12_RS10635	COG0758	DNA mediated transformation
D9C12_RS10640	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D9C12_RS10645	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
D9C12_RS10650	COG4974	Belongs to the 'phage' integrase family
D9C12_RS10655	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
D9C12_RS10660	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
D9C12_RS10665	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
D9C12_RS10670	COG1815	bacterial-type flagellum-dependent cell motility
D9C12_RS10675	COG1558	bacterial-type flagellum-dependent cell motility
D9C12_RS10680	COG1677	Flagellar hook-basal body complex protein FliE
D9C12_RS10685	COG1766	The M ring may be actively involved in energy transduction
D9C12_RS10690	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D9C12_RS10695	COG1317	bacterial-type flagellum organization
D9C12_RS10700	COG1157	protein secretion by the type III secretion system
D9C12_RS10705	COG2882	bacterial-type flagellum organization
D9C12_RS10710	COG3334	PFAM MgtE intracellular
D9C12_RS10715	COG3144	bacterial-type flagellum assembly
D9C12_RS10720	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
D9C12_RS10725	COG4786	Flagellar basal body rod
D9C12_RS10730	COG1582	Flagellar protein (FlbD)
D9C12_RS10735	COG1580	Controls the rotational direction of flagella during chemotaxis
D9C12_RS10740	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D9C12_RS10745	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D9C12_RS10745	COG1776	CheC inhibitor of MCP methylation
D9C12_RS10750	COG2201	protein-glutamate methylesterase activity
D9C12_RS10755	COG3190	flagellar
D9C12_RS10760	COG1338	Plays a role in the flagellum-specific transport system
D9C12_RS10765	COG1987	bacterial-type flagellum assembly
D9C12_RS10770	COG1684	flagellar biosynthetic protein fliR
D9C12_RS10775	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
D9C12_RS10780	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
D9C12_RS10785	COG1419	protein localization to endoplasmic reticulum
D9C12_RS10790	COG0455	bacterial-type flagellum organization
D9C12_RS10795	COG2201	protein-glutamate methylesterase activity
D9C12_RS10800	COG0643	Histidine kinase
D9C12_RS10800	COG2198	Histidine kinase
D9C12_RS10805	COG0835	chemotaxis
D9C12_RS10810	COG1776	CheC inhibitor of MCP methylation
D9C12_RS10815	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
D9C12_RS10820	COG1191	sigma factor activity
D9C12_RS10830	COG0052	Belongs to the universal ribosomal protein uS2 family
D9C12_RS10835	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
D9C12_RS10840	COG0528	UMP kinase activity
D9C12_RS10845	COG0233	cytoplasmic translational termination
D9C12_RS10850	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
D9C12_RS10855	COG4589	Belongs to the CDS family
D9C12_RS10860	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
D9C12_RS10865	COG0750	zinc metalloprotease
D9C12_RS10870	COG0442	prolyl-tRNA aminoacylation
D9C12_RS10875	COG2176	DNA-directed DNA polymerase activity
D9C12_RS10880	COG0779	Required for maturation of 30S ribosomal subunits
D9C12_RS10885	COG0195	Participates in both transcription termination and antitermination
D9C12_RS10890	COG2740	Nucleic-acid-binding protein implicated in transcription termination
D9C12_RS10895	COG1358	cellular component organization or biogenesis
D9C12_RS10900	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
D9C12_RS10905	COG1550	Protein conserved in bacteria
D9C12_RS10910	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
D9C12_RS10915	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
D9C12_RS10920	COG0196	riboflavin kinase activity
D9C12_RS10925	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
D9C12_RS10930	COG1185	polyribonucleotide nucleotidyltransferase activity
D9C12_RS10935	COG0726	polysaccharide deacetylase
D9C12_RS10940	COG0612	Peptidase, M16
D9C12_RS10945	COG1873	PFAM PRC-barrel domain
D9C12_RS10950	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
D9C12_RS10955	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
D9C12_RS10960	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D9C12_RS10965	COG0527	aspartate kinase activity
D9C12_RS10970	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D9C12_RS10975	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
D9C12_RS10990	COG4980	gas vesicle protein
D9C12_RS10990	COG1674	ftsk spoiiie
D9C12_RS10995	COG2188	Transcriptional regulator
D9C12_RS11000	COG2814	Major facilitator Superfamily
D9C12_RS11005	COG0612	Peptidase, M16
D9C12_RS11010	COG0612	Peptidase, M16
D9C12_RS11015	COG0300	oxidoreductase activity
D9C12_RS11030	COG1426	Protein conserved in bacteria
D9C12_RS11035	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
D9C12_RS11040	COG1058	Belongs to the CinA family
D9C12_RS11040	COG1546	Belongs to the CinA family
D9C12_RS11045	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
D9C12_RS11050	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D9C12_RS11055	COG1418	mRNA catabolic process
D9C12_RS11060	COG1692	metallophosphoesterase
D9C12_RS11065	COG2359	stage V sporulation protein S
D9C12_RS11070	COG1063	alcohol dehydrogenase
D9C12_RS11075	COG0156	8-amino-7-oxononanoate synthase activity
D9C12_RS11085	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
D9C12_RS11090	COG4550	Control of competence regulator ComK, YlbF/YmcA
D9C12_RS11100	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
D9C12_RS11105	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
D9C12_RS11180	COG3328	transposase activity
D9C12_RS11200	COG3226	Transcriptional regulator
D9C12_RS11210	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9C12_RS11215	COG1404	Belongs to the peptidase S8 family
D9C12_RS11225	COG4195	phage-related replication protein
D9C12_RS11230	COG1764	response to oxidative stress
D9C12_RS11235	COG2076	Multidrug Resistance protein
D9C12_RS11240	COG2076	Multidrug Resistance protein
D9C12_RS11255	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
D9C12_RS11260	COG1923	regulation of RNA biosynthetic process
D9C12_RS11275	COG1780	Probably involved in ribonucleotide reductase function
D9C12_RS11280	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9C12_RS11285	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9C12_RS11290	COG4112	unkown
D9C12_RS11295	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS11305	COG0464	growth
D9C12_RS11310	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
D9C12_RS11315	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
D9C12_RS11320	COG0789	Transcriptional regulator
D9C12_RS11325	COG0174	glutamine synthetase
D9C12_RS11345	COG5444	nuclease activity
D9C12_RS11375	COG4282	regulation of fungal-type cell wall biogenesis
D9C12_RS11390	COG3328	transposase activity
D9C12_RS11400	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS11415	COG3655	Transcriptional regulator
D9C12_RS11440	COG0135	phosphoribosylanthranilate isomerase activity
D9C12_RS11445	COG2211	Major facilitator Superfamily
D9C12_RS11450	COG3507	Belongs to the glycosyl hydrolase 43 family
D9C12_RS11455	COG1940	carbohydrate kinase activity
D9C12_RS11460	COG2115	Belongs to the xylose isomerase family
D9C12_RS11465	COG1070	Carbohydrate kinase
D9C12_RS11480	COG3328	transposase activity
D9C12_RS11485	COG1525	nuclease
D9C12_RS11490	COG2814	Major facilitator Superfamily
D9C12_RS11495	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
D9C12_RS11510	COG0756	dUTP diphosphatase activity
D9C12_RS11555	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
D9C12_RS11565	COG3832	glyoxalase III activity
D9C12_RS11610	COG4195	phage-related replication protein
D9C12_RS11620	COG0346	lactoylglutathione lyase activity
D9C12_RS11630	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
D9C12_RS11635	COG1388	LysM domain
D9C12_RS11640	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
D9C12_RS11645	COG4224	UPF0291 protein
D9C12_RS11650	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D9C12_RS11660	COG3763	UPF0154 protein
D9C12_RS11670	COG0785	Cytochrome C biogenesis protein
D9C12_RS11675	COG2201	protein-glutamate methylesterase activity
D9C12_RS11680	COG4846	Membrane protein involved in cytochrome C biogenesis
D9C12_RS11695	COG0071	Belongs to the small heat shock protein (HSP20) family
D9C12_RS11710	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
D9C12_RS11715	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9C12_RS11735	COG0824	Thioesterase
D9C12_RS11745	COG4841	protein insertion into membrane
D9C12_RS11750	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
D9C12_RS11755	COG1832	CoA-binding protein
D9C12_RS11760	COG0187	DNA topoisomerase II activity
D9C12_RS11765	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D9C12_RS11775	COG1115	amino acid carrier protein
D9C12_RS11780	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
D9C12_RS11800	COG2246	polysaccharide biosynthetic process
D9C12_RS11805	COG1210	Utp--glucose-1-phosphate uridylyltransferase
D9C12_RS11810	COG0586	Pfam SNARE associated Golgi protein
D9C12_RS11815	COG2404	hydrolase activity, acting on ester bonds
D9C12_RS11820	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
D9C12_RS11825	COG1024	Enoyl-CoA hydratase
D9C12_RS11830	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
D9C12_RS11835	COG0511	ligase activity, forming carbon-carbon bonds
D9C12_RS11840	COG0439	Biotin carboxylase
D9C12_RS11845	COG0318	PFAM AMP-dependent synthetase and ligase
D9C12_RS11850	COG1960	acyl-CoA dehydrogenase activity
D9C12_RS11860	COG1649	PFAM Uncharacterised BCR, COG1649
D9C12_RS11875	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9C12_RS11880	COG2027	D-alanyl-D-alanine carboxypeptidase
D9C12_RS11885	COG2017	converts alpha-aldose to the beta-anomer
D9C12_RS11890	COG0534	Mate efflux family protein
D9C12_RS11905	COG0582	viral genome integration into host DNA
D9C12_RS11910	COG0166	Belongs to the GPI family
D9C12_RS11915	COG0405	Gamma-glutamyltransferase
D9C12_RS11920	COG0583	DNA-binding transcription factor activity
D9C12_RS11925	COG0604	alcohol dehydrogenase
D9C12_RS11930	COG0493	'glutamate synthase
D9C12_RS11935	COG0067	glutamate synthase
D9C12_RS11935	COG0069	glutamate synthase activity
D9C12_RS11935	COG0070	glutamate synthase
D9C12_RS11940	COG0583	DNA-binding transcription factor activity
D9C12_RS11970	COG0300	oxidoreductase activity
D9C12_RS11975	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
D9C12_RS11985	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS12000	COG1131	(ABC) transporter
D9C12_RS12010	COG2814	Major facilitator Superfamily
D9C12_RS12020	COG2323	membrane
D9C12_RS12025	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D9C12_RS12035	COG2323	membrane
D9C12_RS12050	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D9C12_RS12070	COG3546	catalase activity
D9C12_RS12085	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS12105	COG0840	transmembrane signaling receptor activity
D9C12_RS12105	COG5278	phosphoserine phosphatase activity
D9C12_RS12110	COG2368	4-hydroxyphenylacetate
D9C12_RS12115	COG4305	rare lipoprotein A
D9C12_RS12120	COG3619	membrane
D9C12_RS12140	COG2140	Oxalate decarboxylase
D9C12_RS12170	COG2720	vancomycin resistance protein
D9C12_RS12180	COG3655	Transcriptional regulator
D9C12_RS12185	COG3739	integral membrane protein
D9C12_RS12190	COG0583	DNA-binding transcription factor activity
D9C12_RS12195	COG0697	spore germination
D9C12_RS12205	COG0693	protein deglycase activity
D9C12_RS12210	COG2367	Beta-lactamase
D9C12_RS12240	COG3848	Pyruvate phosphate dikinase
D9C12_RS12240	COG0574	Belongs to the PEP-utilizing enzyme family
D9C12_RS12245	COG0726	polysaccharide deacetylase
D9C12_RS12255	COG2314	TM2 domain
D9C12_RS12260	COG1396	sequence-specific DNA binding
D9C12_RS12340	COG3655	Transcriptional regulator
D9C12_RS12385	COG0457	Tetratricopeptide repeat
D9C12_RS12390	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS12400	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D9C12_RS12405	COG2226	methyltransferase
D9C12_RS12410	COG2211	Major facilitator Superfamily
D9C12_RS12415	COG3328	transposase activity
D9C12_RS12445	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9C12_RS12465	COG5444	nuclease activity
D9C12_RS12470	COG4282	regulation of fungal-type cell wall biogenesis
D9C12_RS12475	COG1231	oxidoreductase activity
D9C12_RS12480	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9C12_RS12485	COG0662	Cupin 2, conserved barrel domain protein
D9C12_RS12485	COG2207	Transcriptional regulator
D9C12_RS12490	COG0456	acetyltransferase
D9C12_RS12495	COG1309	transcriptional regulator
D9C12_RS12500	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9C12_RS12505	COG3708	Transcriptional regulator
D9C12_RS12510	COG2378	regulation of single-species biofilm formation
D9C12_RS12520	COG0640	Transcriptional regulator
D9C12_RS12525	COG0741	lytic transglycosylase activity
D9C12_RS12540	COG2322	membrane
D9C12_RS12555	COG1619	proteins homologs of microcin C7 resistance protein MccF
D9C12_RS12560	COG3239	Fatty acid desaturase
D9C12_RS12565	COG4585	Histidine kinase
D9C12_RS12570	COG2197	response regulator
D9C12_RS12575	COG1388	LysM domain
D9C12_RS12575	COG3584	3D domain protein
D9C12_RS12580	COG0514	ATP-dependent DNA helicase (RecQ)
D9C12_RS12595	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
D9C12_RS12600	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D9C12_RS12615	COG0071	Belongs to the small heat shock protein (HSP20) family
D9C12_RS12640	COG1012	belongs to the aldehyde dehydrogenase family
D9C12_RS12645	COG1657	PFAM Prenyltransferase squalene oxidase
D9C12_RS12650	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
D9C12_RS12655	COG0733	neurotransmitter:sodium symporter activity
D9C12_RS12660	COG0385	Bile acid
D9C12_RS12665	COG0508	dehydrogenase complex catalyzes the overall conversion of
D9C12_RS12670	COG0567	Dehydrogenase, E1 component
D9C12_RS12675	COG4548	von Willebrand factor, type A
D9C12_RS12680	COG0714	Associated with various cellular activities
D9C12_RS12685	COG2032	superoxide dismutase activity
D9C12_RS12690	COG1388	LysM domain
D9C12_RS12690	COG0791	NLP P60 protein
D9C12_RS12695	COG1819	glycosyl
D9C12_RS12700	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
D9C12_RS12705	COG0534	Mate efflux family protein
D9C12_RS12710	COG1366	Belongs to the anti-sigma-factor antagonist family
D9C12_RS12720	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
D9C12_RS12725	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
D9C12_RS12735	COG2962	Rard protein
D9C12_RS12750	COG2610	gluconate transmembrane transporter activity
D9C12_RS12755	COG1942	4-Oxalocrotonate Tautomerase
D9C12_RS12760	COG1733	regulation of RNA biosynthetic process
D9C12_RS12765	COG0778	Nitroreductase
D9C12_RS12770	COG0400	carboxylic ester hydrolase activity
D9C12_RS12775	COG0346	lactoylglutathione lyase activity
D9C12_RS12785	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9C12_RS12790	COG0793	Belongs to the peptidase S41A family
D9C12_RS12790	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS12795	COG2226	methyltransferase
D9C12_RS12805	COG1876	peptidase activity
D9C12_RS12810	COG0813	purine-nucleoside phosphorylase activity
D9C12_RS12825	COG0671	phosphoesterase, PA-phosphatase related
D9C12_RS12850	COG4479	Belongs to the UPF0346 family
D9C12_RS12860	COG1509	lysine 2,3-aminomutase activity
D9C12_RS12865	COG0456	acetyltransferase
D9C12_RS12870	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D9C12_RS12880	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
D9C12_RS12885	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D9C12_RS12900	COG0456	acetyltransferase
D9C12_RS12905	COG0463	Glycosyl transferase, family 2
D9C12_RS12920	COG4641	Protein conserved in bacteria
D9C12_RS12925	COG4247	3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase)
D9C12_RS12930	COG1086	Polysaccharide biosynthesis protein
D9C12_RS12935	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D9C12_RS12940	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D9C12_RS12945	COG1846	Transcriptional regulator
D9C12_RS12950	COG0534	Mate efflux family protein
D9C12_RS12960	COG4698	Protein conserved in bacteria
D9C12_RS12965	COG2755	lipolytic protein G-D-S-L family
D9C12_RS12970	COG1999	signal sequence binding
D9C12_RS12980	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
D9C12_RS12985	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D9C12_RS12990	COG1272	protein, Hemolysin III
D9C12_RS12995	COG0204	Acyl-transferase
D9C12_RS13000	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
D9C12_RS13005	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
D9C12_RS13015	COG2136	Putative SAM-dependent methyltransferase
D9C12_RS13015	COG2521	methyltransferase
D9C12_RS13025	COG0129	dihydroxy-acid dehydratase activity
D9C12_RS13030	COG1413	lyase activity
D9C12_RS13035	COG1418	mRNA catabolic process
D9C12_RS13040	COG0386	Belongs to the glutathione peroxidase family
D9C12_RS13045	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
D9C12_RS13050	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
D9C12_RS13060	COG1278	Cold shock
D9C12_RS13080	COG0328	RNA-DNA hybrid ribonuclease activity
D9C12_RS13085	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
D9C12_RS13090	COG0328	RNA-DNA hybrid ribonuclease activity
D9C12_RS13100	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D9C12_RS13115	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
D9C12_RS13125	COG1755	Isoprenylcysteine carboxyl methyltransferase
D9C12_RS13135	COG2233	PERMEase
D9C12_RS13140	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
D9C12_RS13145	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
D9C12_RS13155	COG0800	Aldolase
D9C12_RS13160	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9C12_RS13165	COG1609	Transcriptional regulator
D9C12_RS13170	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
D9C12_RS13175	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS13180	COG1199	ATP-dependent helicase activity
D9C12_RS13195	COG0116	Belongs to the methyltransferase superfamily
D9C12_RS13210	COG4474	Belongs to the UPF0398 family
D9C12_RS13225	COG3359	exonuclease
D9C12_RS13230	COG1111	helicase
D9C12_RS13230	COG1205	dead DEAH box helicase
D9C12_RS13235	COG2190	(PTS) system
D9C12_RS13240	COG0071	Belongs to the small heat shock protein (HSP20) family
D9C12_RS13275	COG3331	DNA recombination
D9C12_RS13280	COG4499	WXG100 protein secretion system (Wss), protein YukC
D9C12_RS13280	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D9C12_RS13290	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
D9C12_RS13295	COG3935	DnaD domain protein
D9C12_RS13300	COG0017	Asparaginyl-tRNA synthetase
D9C12_RS13305	COG0436	Aminotransferase
D9C12_RS13310	COG5353	protein conserved in bacteria
D9C12_RS13320	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D9C12_RS13320	COG1199	ATP-dependent helicase activity
D9C12_RS13325	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
D9C12_RS13330	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
D9C12_RS13335	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
D9C12_RS13340	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
D9C12_RS13340	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
D9C12_RS13345	COG0617	tRNA 3'-terminal CCA addition
D9C12_RS13350	COG0438	transferase activity, transferring glycosyl groups
D9C12_RS13355	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
D9C12_RS13360	COG1803	Methylglyoxal synthase
D9C12_RS13365	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
D9C12_RS13370	COG1694	Mazg nucleotide pyrophosphohydrolase
D9C12_RS13375	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9C12_RS13385	COG4347	Protein of unknown function (DUF1405)
D9C12_RS13390	COG2010	Cytochrome c
D9C12_RS13390	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
D9C12_RS13395	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
D9C12_RS13400	COG0723	plastoquinol--plastocyanin reductase activity
D9C12_RS13410	COG5582	Belongs to the UPF0302 family
D9C12_RS13415	COG0457	Tetratricopeptide repeat
D9C12_RS13420	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
D9C12_RS13425	COG0287	Prephenate dehydrogenase
D9C12_RS13440	COG0133	tryptophan synthase activity
D9C12_RS13445	COG0135	phosphoribosylanthranilate isomerase activity
D9C12_RS13455	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
D9C12_RS13460	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D9C12_RS13465	COG4401	Chorismate mutase type I
D9C12_RS13470	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
D9C12_RS13475	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
D9C12_RS13480	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
D9C12_RS13485	COG0105	UTP biosynthetic process
D9C12_RS13490	COG0142	geranyltranstransferase activity
D9C12_RS13495	COG2226	methyltransferase
D9C12_RS13500	COG0142	geranyltranstransferase activity
D9C12_RS13510	COG0302	gtp cyclohydrolase
D9C12_RS13525	COG0776	regulation of translation
D9C12_RS13530	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
D9C12_RS13545	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
D9C12_RS13550	COG1160	GTP binding
D9C12_RS13580	COG1304	FMN binding
D9C12_RS13585	COG0539	negative regulation of cytoplasmic translation
D9C12_RS13590	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
D9C12_RS13600	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
D9C12_RS13605	COG2959	enzyme of heme biosynthesis
D9C12_RS13610	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS13610	COG3773	Cell wall hydrolase
D9C12_RS13615	COG2339	peptidase activity
D9C12_RS13620	COG0492	ferredoxin-NADP+ reductase activity
D9C12_RS13625	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D9C12_RS13630	COG4862	establishment of competence for transformation
D9C12_RS13635	COG1408	metallophosphoesterase
D9C12_RS13645	COG1388	LysM domain
D9C12_RS13650	COG1266	CAAX protease self-immunity
D9C12_RS13660	COG4955	Helix-turn-helix domain
D9C12_RS13665	COG1141	Ferredoxin
D9C12_RS13670	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
D9C12_RS13675	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D9C12_RS13680	COG0710	3-dehydroquinate dehydratase activity
D9C12_RS13690	COG1595	DNA-templated transcription, initiation
D9C12_RS13695	COG5002	protein histidine kinase activity
D9C12_RS13700	COG0745	RESPONSE REGULATOR receiver
D9C12_RS13705	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D9C12_RS13710	COG1333	cytochrome c biogenesis protein
D9C12_RS13715	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9C12_RS13720	COG1187	pseudouridine synthase activity
D9C12_RS13725	COG0700	Nucleoside recognition
D9C12_RS13730	COG2715	membrane protein required for spore maturation
D9C12_RS13735	COG1686	Belongs to the peptidase S11 family
D9C12_RS13745	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
D9C12_RS13750	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
D9C12_RS13755	COG1547	Domain of unknown function (DUF309)
D9C12_RS13760	COG0456	acetyltransferase
D9C12_RS13765	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
D9C12_RS13770	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
D9C12_RS13770	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
D9C12_RS13775	COG0307	riboflavin synthase, alpha
D9C12_RS13780	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D9C12_RS13780	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D9C12_RS13790	COG0681	Belongs to the peptidase S26 family
D9C12_RS13800	COG3478	Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
D9C12_RS13850	COG3328	transposase activity
D9C12_RS13860	COG3012	SEC-C Motif Domain Protein
D9C12_RS13870	COG0457	Tetratricopeptide repeat
D9C12_RS13880	COG3328	transposase activity
D9C12_RS13940	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
D9C12_RS13955	COG4086	secreted protein
D9C12_RS13960	COG0019	diaminopimelate decarboxylase activity
D9C12_RS13965	COG0697	spore germination
D9C12_RS13980	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D9C12_RS14000	COG1191	sigma factor activity
D9C12_RS14005	COG2172	sigma factor antagonist activity
D9C12_RS14010	COG1366	Belongs to the anti-sigma-factor antagonist family
D9C12_RS14015	COG1686	Belongs to the peptidase S11 family
D9C12_RS14020	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
D9C12_RS14025	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
D9C12_RS14030	COG4974	Belongs to the 'phage' integrase family
D9C12_RS14040	COG0735	belongs to the Fur family
D9C12_RS14045	COG1300	Membrane
D9C12_RS14055	COG0281	malic enzyme
D9C12_RS14060	COG1757	Na H antiporter
D9C12_RS14065	COG1027	Aspartate ammonia-lyase
D9C12_RS14070	COG0252	asparaginase activity
D9C12_RS14075	COG1396	sequence-specific DNA binding
D9C12_RS14080	COG1379	DNA repair
D9C12_RS14085	COG0494	nUDIX hydrolase
D9C12_RS14095	COG0667	Aldo Keto reductase
D9C12_RS14105	COG1073	alpha beta
D9C12_RS14115	COG4918	Iron-sulphur cluster biosynthesis
D9C12_RS14120	COG0456	acetyltransferase
D9C12_RS14120	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
D9C12_RS14125	COG2329	Antibiotic biosynthesis monooxygenase
D9C12_RS14130	COG0456	acetyltransferase
D9C12_RS14140	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
D9C12_RS14150	COG2211	Major facilitator Superfamily
D9C12_RS14155	COG0346	lactoylglutathione lyase activity
D9C12_RS14160	COG1072	(Pantothenic acid kinase))
D9C12_RS14165	COG3048	D-serine ammonia-lyase activity
D9C12_RS14170	COG0300	oxidoreductase activity
D9C12_RS14175	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9C12_RS14180	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D9C12_RS14195	COG4187	Peptidase family M20/M25/M40
D9C12_RS14200	COG1902	pentaerythritol trinitrate reductase activity
D9C12_RS14205	COG0596	Alpha beta hydrolase
D9C12_RS14215	COG1234	tRNA 3'-trailer cleavage
D9C12_RS14220	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
D9C12_RS14225	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
D9C12_RS14240	COG0706	membrane insertase activity
D9C12_RS14245	COG3361	conserved protein (COG2071)
D9C12_RS14250	COG2195	Cleaves the N-terminal amino acid of tripeptides
D9C12_RS14255	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
D9C12_RS14260	COG0346	lactoylglutathione lyase activity
D9C12_RS14265	COG1376	ErfK ybiS ycfS ynhG family protein
D9C12_RS14270	COG4129	membrane
D9C12_RS14275	COG1126	abc transporter atp-binding protein
D9C12_RS14280	COG0765	amino acid transport
D9C12_RS14285	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9C12_RS14295	COG1597	lipid kinase activity
D9C12_RS14305	COG4978	Transcriptional regulator
D9C12_RS14305	COG0789	Transcriptional regulator
D9C12_RS14310	COG0508	dehydrogenase complex catalyzes the overall conversion of
D9C12_RS14315	COG0022	dehydrogenase e1 component
D9C12_RS14320	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
D9C12_RS14325	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D9C12_RS14330	COG3426	butyrate kinase activity
D9C12_RS14335	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D9C12_RS14340	COG0280	phosphate acetyltransferase
D9C12_RS14345	COG3829	transcription factor binding
D9C12_RS14345	COG3290	protein histidine kinase activity
D9C12_RS14355	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
D9C12_RS14360	COG2079	MmgE PrpD family protein
D9C12_RS14365	COG0372	Belongs to the citrate synthase family
D9C12_RS14370	COG1960	acyl-CoA dehydrogenase activity
D9C12_RS14375	COG1250	3-hydroxyacyl-CoA dehydrogenase
D9C12_RS14380	COG0183	Belongs to the thiolase family
D9C12_RS14385	COG0584	glycerophosphoryl diester phosphodiesterase
D9C12_RS14390	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS14405	COG1902	pentaerythritol trinitrate reductase activity
D9C12_RS14410	COG0745	RESPONSE REGULATOR receiver
D9C12_RS14420	COG0750	zinc metalloprotease
D9C12_RS14425	COG0497	DNA recombination
D9C12_RS14430	COG1438	arginine binding
D9C12_RS14435	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
D9C12_RS14440	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
D9C12_RS14445	COG0142	geranyltranstransferase activity
D9C12_RS14450	COG1722	exodeoxyribonuclease VII activity
D9C12_RS14455	COG1570	exodeoxyribonuclease VII activity
D9C12_RS14460	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
D9C12_RS14465	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
D9C12_RS14470	COG1302	Protein conserved in bacteria
D9C12_RS14475	COG0439	Biotin carboxylase
D9C12_RS14480	COG0511	ligase activity, forming carbon-carbon bonds
D9C12_RS14530	COG3854	ATPases associated with a variety of cellular activities
D9C12_RS14540	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
D9C12_RS14545	COG0006	proline dipeptidase activity
D9C12_RS14550	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
D9C12_RS14560	COG3872	metal-dependent enzyme
D9C12_RS14570	COG1752	Esterase of the alpha-beta hydrolase superfamily
D9C12_RS14575	COG1321	iron dependent repressor
D9C12_RS14580	COG0095	Lipoate-protein ligase
D9C12_RS14585	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D9C12_RS14590	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
D9C12_RS14595	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
D9C12_RS14600	COG0404	The glycine cleavage system catalyzes the degradation of glycine
D9C12_RS14605	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
D9C12_RS14620	COG1396	sequence-specific DNA binding
D9C12_RS14630	COG0681	Belongs to the peptidase S26 family
D9C12_RS14655	COG4940	Competence protein ComGF
D9C12_RS14665	COG4970	Tfp pilus assembly protein FimT
D9C12_RS14670	COG4537	Required for transformation and DNA binding
D9C12_RS14675	COG1459	type II secretion system
D9C12_RS14680	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D9C12_RS14685	COG0517	IMP dehydrogenase activity
D9C12_RS14690	COG0598	Magnesium transport protein CorA
D9C12_RS14695	COG1253	flavin adenine dinucleotide binding
D9C12_RS14700	COG1366	Belongs to the anti-sigma-factor antagonist family
D9C12_RS14710	COG1393	Belongs to the ArsC family
D9C12_RS14725	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9C12_RS14735	COG0011	TIGRFAM Protein of
D9C12_RS14745	COG2866	Carboxypeptidase
D9C12_RS14750	COG1368	sulfuric ester hydrolase activity
D9C12_RS14755	COG1940	carbohydrate kinase activity
D9C12_RS14760	COG4483	Protein conserved in bacteria
D9C12_RS14765	COG0705	Rhomboid family
D9C12_RS14765	COG0457	Tetratricopeptide repeat
D9C12_RS14775	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
D9C12_RS14785	COG0438	transferase activity, transferring glycosyl groups
D9C12_RS14800	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
D9C12_RS14805	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
D9C12_RS14810	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
D9C12_RS14815	COG0581	inorganic phosphate transmembrane transporter activity
D9C12_RS14820	COG0573	inorganic phosphate transmembrane transporter activity
D9C12_RS14825	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
D9C12_RS14830	COG0768	penicillin binding
D9C12_RS14835	COG0477	Major facilitator Superfamily
D9C12_RS14840	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
D9C12_RS14845	COG2839	Protein conserved in bacteria
D9C12_RS14850	COG5521	maltodextrose utilization protein MalA
D9C12_RS14855	COG1388	LysM domain
D9C12_RS14860	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
D9C12_RS14865	COG4709	membrane
D9C12_RS14870	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
D9C12_RS14875	COG0735	belongs to the Fur family
D9C12_RS14880	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9C12_RS14890	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
D9C12_RS14895	COG0513	Belongs to the DEAD box helicase family
D9C12_RS14905	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
D9C12_RS14910	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
D9C12_RS14915	COG2384	SAM-dependent methyltransferase
D9C12_RS14920	COG2010	Cytochrome c
D9C12_RS14930	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D9C12_RS14935	COG0358	DNA primase activity
D9C12_RS14940	COG1671	Belongs to the UPF0178 family
D9C12_RS14945	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
D9C12_RS14950	COG0517	IMP dehydrogenase activity
D9C12_RS14955	COG0751	glycine-tRNA ligase activity
D9C12_RS14960	COG0752	glycyl-tRNA synthetase alpha subunit
D9C12_RS14965	COG1381	Involved in DNA repair and RecF pathway recombination
D9C12_RS14975	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
D9C12_RS14980	COG0295	cytidine deaminase activity
D9C12_RS14985	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
D9C12_RS14990	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
D9C12_RS14995	COG1480	7TM receptor with intracellular HD hydrolase
D9C12_RS15000	COG1702	phosphate starvation-inducible protein PhoH
D9C12_RS15005	COG0561	phosphatase activity
D9C12_RS15020	COG4864	UPF0365 protein
D9C12_RS15025	COG1030	water channel activity
D9C12_RS15030	COG1610	YqeY-like protein
D9C12_RS15040	COG1283	sodium-dependent phosphate transmembrane transporter activity
D9C12_RS15045	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
D9C12_RS15050	COG1385	rRNA (uridine-N3-)-methyltransferase activity
D9C12_RS15055	COG2264	protein methyltransferase activity
D9C12_RS15060	COG0484	heat shock protein binding
D9C12_RS15065	COG0443	Heat shock 70 kDa protein
D9C12_RS15070	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
D9C12_RS15075	COG1420	regulation of RNA biosynthetic process
D9C12_RS15080	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D9C12_RS15085	COG0481	GTPase activity
D9C12_RS15095	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS15100	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
D9C12_RS15105	COG0268	Binds directly to 16S ribosomal RNA
D9C12_RS15110	COG1466	dna polymerase III delta subunit
D9C12_RS15125	COG2333	competence protein COMEC
D9C12_RS15125	COG0658	competence protein
D9C12_RS15130	COG2131	deaminase
D9C12_RS15135	COG1555	photosystem II stabilization
D9C12_RS15135	COG1596	polysaccharide export
D9C12_RS15140	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D9C12_RS15145	COG2226	methyltransferase
D9C12_RS15150	COG0799	negative regulation of ribosome biogenesis
D9C12_RS15155	COG1713	HD superfamily hydrolase involved in NAD metabolism
D9C12_RS15160	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
D9C12_RS15165	COG1534	Rna-binding protein
D9C12_RS15170	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
D9C12_RS15175	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
D9C12_RS15180	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
D9C12_RS15190	COG2755	lipolytic protein G-D-S-L family
D9C12_RS15195	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS15195	COG5632	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS15200	COG0398	Pfam SNARE associated Golgi protein
D9C12_RS15205	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
D9C12_RS15215	COG3209	COG3209 Rhs family protein
D9C12_RS15235	COG0114	fumarate hydratase activity
D9C12_RS15240	COG0583	DNA-binding transcription factor activity
D9C12_RS15255	COG0457	Tetratricopeptide repeat
D9C12_RS15380	COG0789	Transcriptional regulator
D9C12_RS15380	COG4978	Transcriptional regulator
D9C12_RS15385	COG2814	Major facilitator Superfamily
D9C12_RS15390	COG0456	acetyltransferase
D9C12_RS15395	COG3328	transposase activity
D9C12_RS15405	COG1253	flavin adenine dinucleotide binding
D9C12_RS15415	COG0697	spore germination
D9C12_RS15420	COG0583	DNA-binding transcription factor activity
D9C12_RS15425	COG2072	flavoprotein involved in K transport
D9C12_RS15430	COG1230	cation diffusion facilitator family transporter
D9C12_RS15445	COG1114	Component of the transport system for branched-chain amino acids
D9C12_RS15450	COG1687	branched-chain amino acid
D9C12_RS15455	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
D9C12_RS15460	COG1522	sequence-specific DNA binding
D9C12_RS15465	COG2732	(Barnase) inhibitor
D9C12_RS15475	COG1335	isochorismatase
D9C12_RS15490	COG2318	DinB family
D9C12_RS15500	COG2070	2-Nitropropane dioxygenase
D9C12_RS15515	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
D9C12_RS15535	COG3443	Belongs to the bacterial solute-binding protein 9 family
D9C12_RS15540	COG1595	DNA-templated transcription, initiation
D9C12_RS15545	COG0667	Aldo Keto reductase
D9C12_RS15550	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS15555	COG5566	PFAM Mor transcription activator
D9C12_RS15560	COG0596	Alpha beta hydrolase
D9C12_RS15565	COG4991	sh3 domain protein
D9C12_RS15570	COG4991	sh3 domain protein
D9C12_RS15580	COG0346	lactoylglutathione lyase activity
D9C12_RS15590	COG5577	PFAM Coat F domain
D9C12_RS15595	COG1063	alcohol dehydrogenase
D9C12_RS15605	COG5577	PFAM Coat F domain
D9C12_RS15610	COG0789	Transcriptional regulator
D9C12_RS15620	COG1064	alcohol dehydrogenase
D9C12_RS15625	COG0693	protein deglycase activity
D9C12_RS15630	COG1621	beta-fructofuranosidase activity
D9C12_RS15635	COG3716	PTS system mannose fructose sorbose family IID component
D9C12_RS15640	COG3715	PTS system
D9C12_RS15645	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9C12_RS15650	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9C12_RS15655	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D9C12_RS15655	COG3933	PFAM sigma-54 factor interaction domain-containing protein
D9C12_RS15665	COG1113	amino acid transport
D9C12_RS15670	COG1280	lysine exporter protein (LysE YggA)
D9C12_RS15675	COG1378	Sugar-specific transcriptional regulator TrmB
D9C12_RS15680	COG1595	DNA-templated transcription, initiation
D9C12_RS15700	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
D9C12_RS15700	COG2124	cytochrome p450
D9C12_RS15705	COG1309	transcriptional regulator
D9C12_RS15710	COG2226	methyltransferase
D9C12_RS15725	COG2116	formate transmembrane transporter activity
D9C12_RS15730	COG5609	conserved protein (DUF2294)
D9C12_RS15735	COG3383	formate dehydrogenase (NAD+) activity
D9C12_RS15740	COG2427	Protein of unknown function (DUF1641)
D9C12_RS15750	COG0626	cystathionine gamma-synthase activity
D9C12_RS15755	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D9C12_RS15760	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
D9C12_RS15765	COG2226	methyltransferase
D9C12_RS15780	COG0768	penicillin binding
D9C12_RS15785	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D9C12_RS15790	COG0572	uridine kinase
D9C12_RS15795	COG0826	peptidase U32
D9C12_RS15800	COG0826	peptidase U32
D9C12_RS15805	COG4122	O-methyltransferase activity
D9C12_RS15810	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
D9C12_RS15815	COG3906	Belongs to the UPF0473 family
D9C12_RS15820	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
D9C12_RS15825	COG4472	Bacterial protein of unknown function (DUF965)
D9C12_RS15830	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
D9C12_RS15835	COG0628	permease
D9C12_RS15840	COG1126	abc transporter atp-binding protein
D9C12_RS15845	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9C12_RS15855	COG0765	amino acid transport
D9C12_RS15875	COG3881	PFAM PRC-barrel domain
D9C12_RS15880	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
D9C12_RS15885	COG0457	Tetratricopeptide repeat
D9C12_RS15890	COG0482	sulfurtransferase activity
D9C12_RS15895	COG1104	cysteine desulfurase activity
D9C12_RS15900	COG1959	2 iron, 2 sulfur cluster binding
D9C12_RS15905	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
D9C12_RS15910	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
D9C12_RS15920	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
D9C12_RS15925	COG0124	histidyl-tRNA synthetase
D9C12_RS15935	COG4991	sh3 domain protein
D9C12_RS15935	COG3103	Sh3 type 3 domain protein
D9C12_RS15935	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS15940	COG1490	D-aminoacyl-tRNA deacylase activity
D9C12_RS15945	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D9C12_RS15950	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
D9C12_RS15955	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
D9C12_RS15955	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
D9C12_RS15960	COG5416	Lipopolysaccharide assembly protein A domain
D9C12_RS15965	COG0490	domain, Protein
D9C12_RS15970	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D9C12_RS15970	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D9C12_RS15980	COG2244	polysaccharide biosynthetic process
D9C12_RS15985	COG2323	membrane
D9C12_RS15995	COG1862	Preprotein translocase
D9C12_RS16000	COG0343	queuine tRNA-ribosyltransferase activity
D9C12_RS16005	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
D9C12_RS16015	COG2255	four-way junction helicase activity
D9C12_RS16020	COG0632	four-way junction helicase activity
D9C12_RS16030	COG2814	Major facilitator Superfamily
D9C12_RS16035	COG0673	inositol 2-dehydrogenase activity
D9C12_RS16040	COG2112	serine threonine protein kinase
D9C12_RS16060	COG1115	amino acid carrier protein
D9C12_RS16065	COG0217	transcriptional regulatory protein
D9C12_RS16075	COG1388	LysM domain
D9C12_RS16080	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
D9C12_RS16085	COG0157	Belongs to the NadC ModD family
D9C12_RS16090	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
D9C12_RS16095	COG1104	cysteine desulfurase activity
D9C12_RS16100	COG1827	regulation of RNA biosynthetic process
D9C12_RS16105	COG0077	Prephenate dehydratase
D9C12_RS16110	COG4492	Belongs to the UPF0735 family
D9C12_RS16115	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
D9C12_RS16120	COG3290	protein histidine kinase activity
D9C12_RS16130	COG0211	Belongs to the bacterial ribosomal protein bL27 family
D9C12_RS16135	COG2868	ribosomal protein
D9C12_RS16140	COG0261	This protein binds to 23S rRNA in the presence of protein L20
D9C12_RS16145	COG1994	Peptidase M50
D9C12_RS16150	COG0739	heme binding
D9C12_RS16155	COG2894	cell division
D9C12_RS16160	COG0850	regulation of cytokinetic process
D9C12_RS16165	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
D9C12_RS16175	COG1077	Cell shape determining protein MreB Mrl
D9C12_RS16180	COG2003	Belongs to the UPF0758 family
D9C12_RS16185	COG0424	maF-like protein
D9C12_RS16195	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
D9C12_RS16200	COG0285	dihydrofolate synthase activity
D9C12_RS16205	COG0525	valine-tRNA ligase activity
D9C12_RS16215	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D9C12_RS16220	COG1388	LysM domain
D9C12_RS16225	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
D9C12_RS16230	COG0113	porphobilinogen synthase activity
D9C12_RS16235	COG1587	Uroporphyrinogen-III synthase
D9C12_RS16240	COG0181	hydroxymethylbilane synthase activity
D9C12_RS16245	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D9C12_RS16250	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
D9C12_RS16265	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
D9C12_RS16275	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
D9C12_RS16280	COG0544	peptidyl-prolyl cis-trans isomerase activity
D9C12_RS16285	COG0457	Tetratricopeptide repeat
D9C12_RS16285	COG1477	protein flavinylation
D9C12_RS16290	COG0066	3-isopropylmalate dehydratase activity
D9C12_RS16295	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
D9C12_RS16305	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
D9C12_RS16310	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
D9C12_RS16315	COG0440	acetolactate synthase activity
D9C12_RS16320	COG0028	Belongs to the TPP enzyme family
D9C12_RS16335	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
D9C12_RS16365	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
D9C12_RS16390	COG0622	Phosphoesterase
D9C12_RS16395	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
D9C12_RS16400	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
D9C12_RS16405	COG5401	PFAM Sporulation and spore germination
D9C12_RS16410	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
D9C12_RS16415	COG1846	Transcriptional regulator
D9C12_RS16420	COG2197	response regulator
D9C12_RS16425	COG0824	Thioesterase
D9C12_RS16430	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
D9C12_RS16435	COG1053	succinate dehydrogenase
D9C12_RS16440	COG2009	succinate dehydrogenase
D9C12_RS16445	COG1719	4-vinyl reductase, 4VR
D9C12_RS16450	COG0527	aspartate kinase activity
D9C12_RS16460	COG0322	excinuclease ABC activity
D9C12_RS16465	COG3118	belongs to the thioredoxin family
D9C12_RS16470	COG3534	alpha-L-arabinofuranosidase
D9C12_RS16475	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
D9C12_RS16480	COG2086	electron transfer activity
D9C12_RS16485	COG1024	Enoyl-CoA hydratase
D9C12_RS16490	COG1309	transcriptional regulator
D9C12_RS16495	COG0318	PFAM AMP-dependent synthetase and ligase
D9C12_RS16500	COG3766	membrane
D9C12_RS16505	COG1193	negative regulation of DNA recombination
D9C12_RS16510	COG1796	DNA polymerase
D9C12_RS16510	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
D9C12_RS16515	COG1286	toxin biosynthetic process
D9C12_RS16520	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
D9C12_RS16525	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
D9C12_RS16530	COG0072	phenylalanine-tRNA ligase activity
D9C12_RS16530	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9C12_RS16535	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
D9C12_RS16545	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D9C12_RS16555	COG3835	regulator
D9C12_RS16560	COG0277	FAD linked oxidase domain protein
D9C12_RS16565	COG0247	lactate metabolic process
D9C12_RS16570	COG0346	lactoylglutathione lyase activity
D9C12_RS16580	COG1966	Carbon starvation protein
D9C12_RS16585	COG3534	alpha-L-arabinofuranosidase
D9C12_RS16590	COG0395	ABC-type sugar transport system, permease component
D9C12_RS16595	COG1175	transmembrane transport
D9C12_RS16600	COG1653	transport
D9C12_RS16605	COG0371	Dehydrogenase
D9C12_RS16615	COG0235	Class ii aldolase
D9C12_RS16620	COG1069	ribulokinase activity
D9C12_RS16625	COG2160	L-arabinose isomerase activity
D9C12_RS16630	COG3507	Belongs to the glycosyl hydrolase 43 family
D9C12_RS16635	COG1363	Peptidase, m42
D9C12_RS16645	COG3326	Membrane
D9C12_RS16650	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
D9C12_RS16655	COG0291	Belongs to the bacterial ribosomal protein bL35 family
D9C12_RS16660	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
D9C12_RS16670	COG1346	cytolysis
D9C12_RS16675	COG1380	Effector of murein hydrolase LrgA
D9C12_RS16680	COG3279	Response regulator of the LytR AlgR family
D9C12_RS16685	COG3275	phosphorelay sensor kinase activity
D9C12_RS16690	COG1011	Hydrolase
D9C12_RS16695	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
D9C12_RS16705	COG0398	Pfam SNARE associated Golgi protein
D9C12_RS16710	COG1484	DNA-dependent DNA replication
D9C12_RS16715	COG3611	Membrane attachment protein
D9C12_RS16720	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
D9C12_RS16725	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
D9C12_RS16730	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D9C12_RS16735	COG1733	regulation of RNA biosynthetic process
D9C12_RS16740	COG2814	Major facilitator Superfamily
D9C12_RS16745	COG0656	L-ascorbic acid biosynthetic process
D9C12_RS16750	COG0237	dephospho-CoA kinase activity
D9C12_RS16755	COG1971	Probably functions as a manganese efflux pump
D9C12_RS16760	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
D9C12_RS16765	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D9C12_RS16765	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D9C12_RS16775	COG0745	RESPONSE REGULATOR receiver
D9C12_RS16780	COG0039	L-malate dehydrogenase activity
D9C12_RS16785	COG0538	isocitrate dehydrogenase activity
D9C12_RS16790	COG0372	Belongs to the citrate synthase family
D9C12_RS16800	COG2707	UPF0756 membrane protein
D9C12_RS16810	COG3030	protein affecting phage T7 exclusion by the F plasmid
D9C12_RS16815	COG0469	pyruvate kinase activity
D9C12_RS16820	COG0205	6-phosphofructokinase activity
D9C12_RS16825	COG0825	malonyl-CoA metabolic process
D9C12_RS16830	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
D9C12_RS16835	COG0281	malic enzyme
D9C12_RS16840	COG0587	DNA-directed DNA polymerase activity
D9C12_RS16860	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
D9C12_RS16870	COG4109	DRTGG domain
D9C12_RS16875	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
D9C12_RS16880	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS16890	COG0165	Argininosuccinate lyase
D9C12_RS16895	COG0137	argininosuccinate synthase activity
D9C12_RS16900	COG0521	Mo-molybdopterin cofactor biosynthetic process
D9C12_RS16905	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
D9C12_RS16915	COG0827	DNA restriction-modification system
D9C12_RS16920	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
D9C12_RS16925	COG3874	Sporulation protein YtfJ
D9C12_RS16935	COG1714	RDD family
D9C12_RS16940	COG0616	signal peptide processing
D9C12_RS16945	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
D9C12_RS16960	COG1574	metal-dependent hydrolase with the TIM-barrel fold
D9C12_RS16965	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D9C12_RS16975	COG0301	tRNA thio-modification
D9C12_RS16980	COG1104	cysteine desulfurase activity
D9C12_RS16985	COG1114	Component of the transport system for branched-chain amino acids
D9C12_RS16990	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
D9C12_RS16995	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
D9C12_RS17000	COG1309	transcriptional regulator
D9C12_RS17005	COG1956	GAF domain-containing protein
D9C12_RS17010	COG2203	Gaf domain
D9C12_RS17010	COG2199	diguanylate cyclase activity
D9C12_RS17020	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
D9C12_RS17025	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
D9C12_RS17030	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D9C12_RS17035	COG0454	-acetyltransferase
D9C12_RS17040	COG0517	IMP dehydrogenase activity
D9C12_RS17045	COG0123	including yeast histone deacetylase and acetoin utilization protein
D9C12_RS17050	COG1360	Flagellar Motor Protein
D9C12_RS17055	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
D9C12_RS17060	COG1609	Transcriptional regulator
D9C12_RS17065	COG1605	Chorismate mutase
D9C12_RS17065	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
D9C12_RS17070	COG3118	belongs to the thioredoxin family
D9C12_RS17075	COG4980	gas vesicle protein
D9C12_RS17080	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
D9C12_RS17090	COG1674	ftsk spoiiie
D9C12_RS17095	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9C12_RS17100	COG4848	Belongs to the UPF0354 family
D9C12_RS17105	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9C12_RS17120	COG1363	Peptidase, m42
D9C12_RS17125	COG5584	Small secreted protein
D9C12_RS17130	COG0281	malic enzyme
D9C12_RS17135	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9C12_RS17140	COG0220	tRNA (guanine-N7-)-methyltransferase activity
D9C12_RS17150	COG0510	thiamine kinase activity
D9C12_RS17155	COG1523	belongs to the glycosyl hydrolase 13 family
D9C12_RS17160	COG1597	lipid kinase activity
D9C12_RS17170	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
D9C12_RS17175	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D9C12_RS17180	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D9C12_RS17190	COG4473	ABC transporter
D9C12_RS17195	COG1131	(ABC) transporter
D9C12_RS17200	COG1349	DNA-binding transcription factor activity
D9C12_RS17205	COG1187	pseudouridine synthase activity
D9C12_RS17210	COG2244	polysaccharide biosynthetic process
D9C12_RS17215	COG2081	HI0933 family
D9C12_RS17220	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D9C12_RS17240	COG1653	transport
D9C12_RS17245	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
D9C12_RS17250	COG4209	transmembrane transport
D9C12_RS17260	COG1653	transport
D9C12_RS17265	COG0395	ABC-type sugar transport system, permease component
D9C12_RS17270	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D9C12_RS17275	COG2124	cytochrome p450
D9C12_RS17280	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
D9C12_RS17290	COG0156	8-amino-7-oxononanoate synthase activity
D9C12_RS17305	COG1073	alpha beta
D9C12_RS17310	COG1609	Transcriptional regulator
D9C12_RS17315	COG1653	transport
D9C12_RS17320	COG1175	transmembrane transport
D9C12_RS17325	COG0395	ABC-type sugar transport system, permease component
D9C12_RS17330	COG1486	melibiose metabolic process
D9C12_RS17335	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D9C12_RS17340	COG0495	leucyl-tRNA aminoacylation
D9C12_RS17350	COG1366	Belongs to the anti-sigma-factor antagonist family
D9C12_RS17350	COG2202	Pas domain
D9C12_RS17355	COG2814	Major facilitator Superfamily
D9C12_RS17365	COG0577	efflux transmembrane transporter activity
D9C12_RS17370	COG1136	(ABC) transporter
D9C12_RS17375	COG2205	protein histidine kinase activity
D9C12_RS17380	COG0745	RESPONSE REGULATOR receiver
D9C12_RS17385	COG0577	efflux transmembrane transporter activity
D9C12_RS17390	COG1136	(ABC) transporter
D9C12_RS17405	COG1131	(ABC) transporter
D9C12_RS17410	COG1725	Transcriptional regulator
D9C12_RS17425	COG1242	4 iron, 4 sulfur cluster binding
D9C12_RS17430	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
D9C12_RS17440	COG2267	carboxylic ester hydrolase activity
D9C12_RS17445	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D9C12_RS17450	COG1113	amino acid transport
D9C12_RS17455	COG0367	asparagine synthase
D9C12_RS17460	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
D9C12_RS17465	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
D9C12_RS17475	COG1506	peptidase
D9C12_RS17480	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D9C12_RS17485	COG1116	anion transmembrane transporter activity
D9C12_RS17490	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D9C12_RS17495	COG0494	nUDIX hydrolase
D9C12_RS17500	COG4824	toxin secretion phage lysis holin
D9C12_RS17505	COG0783	Belongs to the Dps family
D9C12_RS17520	COG1854	S-ribosylhomocysteine lyase activity
D9C12_RS17525	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
D9C12_RS17530	COG0288	reversible hydration of carbon dioxide
D9C12_RS17535	COG0254	rRNA binding
D9C12_RS17540	COG1271	oxidase subunit
D9C12_RS17545	COG1294	oxidase, subunit
D9C12_RS17555	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D9C12_RS17560	COG1321	iron dependent repressor
D9C12_RS17560	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D9C12_RS17565	COG1121	(ABC) transporter
D9C12_RS17570	COG0803	Belongs to the bacterial solute-binding protein 9 family
D9C12_RS17580	COG4948	Mandelate Racemase Muconate Lactonizing
D9C12_RS17585	COG0318	PFAM AMP-dependent synthetase and ligase
D9C12_RS17590	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
D9C12_RS17595	COG0596	Alpha beta hydrolase
D9C12_RS17600	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
D9C12_RS17605	COG1169	isochorismate synthase
D9C12_RS17610	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D9C12_RS17615	COG1210	Utp--glucose-1-phosphate uridylyltransferase
D9C12_RS17620	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
D9C12_RS17625	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D9C12_RS17630	COG0438	transferase activity, transferring glycosyl groups
D9C12_RS17640	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D9C12_RS17645	COG0438	transferase activity, transferring glycosyl groups
D9C12_RS17650	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D9C12_RS17655	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
D9C12_RS17660	COG0058	SHG alpha-glucan phosphorylase activity
D9C12_RS17665	COG0297	glycogen (starch) synthase activity
D9C12_RS17670	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
D9C12_RS17675	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
D9C12_RS17805	COG3859	Proton-coupled thiamine transporter YuaJ
D9C12_RS17810	COG1247	-acetyltransferase
D9C12_RS17815	COG2268	Band 7 protein
D9C12_RS17820	COG1585	Membrane protein implicated in regulation of membrane protease activity
D9C12_RS17825	COG2318	DinB family
D9C12_RS17840	COG1454	alcohol dehydrogenase
D9C12_RS17845	COG1012	belongs to the aldehyde dehydrogenase family
D9C12_RS17850	COG1510	regulation of RNA biosynthetic process
D9C12_RS17860	COG0569	domain protein
D9C12_RS17865	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D9C12_RS17870	COG4682	membrane
D9C12_RS17875	COG1705	Flagellar rod assembly protein muramidase FlgJ
D9C12_RS17880	COG0477	Major facilitator Superfamily
D9C12_RS17885	COG5553	Cysteine dioxygenase type I
D9C12_RS17895	COG1968	undecaprenyl-diphosphatase activity
D9C12_RS17900	COG0628	permease
D9C12_RS17905	COG0673	inositol 2-dehydrogenase activity
D9C12_RS17910	COG4806	L-rhamnose isomerase
D9C12_RS17915	COG3254	rhamnose metabolic process
D9C12_RS17920	COG1070	Carbohydrate kinase
D9C12_RS17925	COG1349	DNA-binding transcription factor activity
D9C12_RS17945	COG0840	transmembrane signaling receptor activity
D9C12_RS17950	COG0840	transmembrane signaling receptor activity
D9C12_RS17955	COG0840	transmembrane signaling receptor activity
D9C12_RS17980	COG1253	flavin adenine dinucleotide binding
D9C12_RS17985	COG2738	Putative neutral zinc metallopeptidase
D9C12_RS18000	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
D9C12_RS18015	COG0166	Belongs to the GPI family
D9C12_RS18020	COG1979	alcohol dehydrogenase
D9C12_RS18025	COG1979	alcohol dehydrogenase
D9C12_RS18030	COG2155	Conserved Protein
D9C12_RS18035	COG1098	S1 RNA binding domain
D9C12_RS18040	COG0436	Aminotransferase
D9C12_RS18045	COG1522	sequence-specific DNA binding
D9C12_RS18050	COG2267	carboxylic ester hydrolase activity
D9C12_RS18060	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
D9C12_RS18065	COG2205	protein histidine kinase activity
D9C12_RS18075	COG5018	Exonuclease
D9C12_RS18085	COG2814	Major facilitator Superfamily
D9C12_RS18090	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D9C12_RS18095	COG3011	Protein conserved in bacteria
D9C12_RS18105	COG3290	protein histidine kinase activity
D9C12_RS18110	COG4565	transcriptional regulatory protein
D9C12_RS18115	COG1744	ABC transporter substrate-binding protein PnrA-like
D9C12_RS18120	COG3845	ABC transporter
D9C12_RS18125	COG4603	Belongs to the binding-protein-dependent transport system permease family
D9C12_RS18130	COG1079	Belongs to the binding-protein-dependent transport system permease family
D9C12_RS18135	COG3493	citrate carrier protein
D9C12_RS18145	COG2111	Na H antiporter
D9C12_RS18145	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
D9C12_RS18150	COG2111	Na H antiporter
D9C12_RS18155	COG1006	Multisubunit Na H antiporter MnhC subunit
D9C12_RS18160	COG0651	ATP synthesis coupled electron transport
D9C12_RS18165	COG1863	multisubunit Na H antiporter MnhE subunit
D9C12_RS18170	COG2212	antiporter activity
D9C12_RS18175	COG1320	monovalent cation:proton antiporter activity
D9C12_RS18180	COG2050	protein possibly involved in aromatic compounds catabolism
D9C12_RS18185	COG2197	response regulator
D9C12_RS18190	COG4585	Histidine kinase
D9C12_RS18200	COG0142	geranyltranstransferase activity
D9C12_RS18220	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
D9C12_RS18225	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
D9C12_RS18230	COG1335	isochorismatase
D9C12_RS18235	COG5506	Protein of unknown function (DUF1694)
D9C12_RS18250	COG0628	permease
D9C12_RS18265	COG1418	mRNA catabolic process
D9C12_RS18270	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS18280	COG1511	domain protein
D9C12_RS18285	COG1674	ftsk spoiiie
D9C12_RS18285	COG0433	COG0433 Predicted ATPase
D9C12_RS18290	COG4499	WXG100 protein secretion system (Wss), protein YukC
D9C12_RS18300	COG4842	Belongs to the WXG100 family
D9C12_RS18310	COG2508	Transcriptional regulator
D9C12_RS18310	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
D9C12_RS18315	COG0686	Belongs to the AlaDH PNT family
D9C12_RS18320	COG5634	Uncharacterized conserved protein (DUF2278)
D9C12_RS18325	COG3251	PFAM MbtH domain protein
D9C12_RS18335	COG1535	isochorismatase
D9C12_RS18335	COG3433	isochorismatase activity
D9C12_RS18340	COG1021	2,3-dihydroxybenzoate-AMP ligase
D9C12_RS18345	COG1169	isochorismate synthase
D9C12_RS18350	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS18355	COG2819	hydrolase of the alpha beta superfamily
D9C12_RS18360	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
D9C12_RS18365	COG1268	BioY protein
D9C12_RS18370	COG2056	Na+-H+ antiporter family
D9C12_RS18375	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
D9C12_RS18380	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
D9C12_RS18385	COG3584	3D domain protein
D9C12_RS18400	COG1252	NADH dehydrogenase
D9C12_RS18405	COG0492	ferredoxin-NADP+ reductase activity
D9C12_RS18415	COG0516	GMP reductase activity
D9C12_RS18430	COG0316	Belongs to the HesB IscA family
D9C12_RS18435	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
D9C12_RS18440	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D9C12_RS18450	COG4844	belongs to the
D9C12_RS18455	COG1252	NADH dehydrogenase
D9C12_RS18460	COG4837	Protein of unknown function (DUF1462)
D9C12_RS18465	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
D9C12_RS18470	COG0823	Involved in the tonB-independent uptake of proteins
D9C12_RS18470	COG1506	peptidase
D9C12_RS18470	COG4946	Tricorn protease homolog
D9C12_RS18475	COG0083	homoserine kinase activity
D9C12_RS18480	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
D9C12_RS18485	COG0460	homoserine dehydrogenase
D9C12_RS18490	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D9C12_RS18495	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
D9C12_RS18500	COG0647	UMP catabolic process
D9C12_RS18505	COG2445	Protein of unknown function DUF86
D9C12_RS18510	COG4470	Protein conserved in bacteria
D9C12_RS18520	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
D9C12_RS18525	COG0739	heme binding
D9C12_RS18535	COG3377	Domain of unknown function (DUF1805)
D9C12_RS18540	COG0737	Belongs to the 5'-nucleotidase family
D9C12_RS18545	COG0730	response to heat
D9C12_RS18550	COG1801	Protein of unknown function DUF72
D9C12_RS18560	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
D9C12_RS18565	COG2508	Transcriptional regulator
D9C12_RS18570	COG2233	PERMEase
D9C12_RS18575	COG2233	PERMEase
D9C12_RS18580	COG3195	allantoin biosynthetic process
D9C12_RS18580	COG3648	Uricase
D9C12_RS18585	COG2351	hydroxyisourate hydrolase activity
D9C12_RS18600	COG2080	2 iron, 2 sulfur cluster binding
D9C12_RS18605	COG1529	Aldehyde oxidase and xanthine dehydrogenase
D9C12_RS18610	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
D9C12_RS18615	COG2068	MobA-Related Protein
D9C12_RS18620	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
D9C12_RS18625	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
D9C12_RS18630	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D9C12_RS18640	COG2356	endonuclease I
D9C12_RS18645	COG3842	ATPase activity
D9C12_RS18650	COG2188	Transcriptional regulator
D9C12_RS18655	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9C12_RS18665	COG1175	transmembrane transport
D9C12_RS18670	COG1653	transport
D9C12_RS18675	COG2222	sugar isomerase
D9C12_RS18680	COG0322	excinuclease ABC activity
D9C12_RS18685	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D9C12_RS18705	COG0346	lactoylglutathione lyase activity
D9C12_RS18710	COG0640	Transcriptional regulator
D9C12_RS18720	COG5444	nuclease activity
D9C12_RS18730	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS18730	COG5632	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS18735	COG4824	toxin secretion phage lysis holin
D9C12_RS18770	COG5412	phage tail tape measure protein
D9C12_RS18770	COG3953	SLT domain
D9C12_RS18865	COG0582	viral genome integration into host DNA
D9C12_RS18945	COG1396	sequence-specific DNA binding
D9C12_RS18945	COG3800	Transcriptional regulator
D9C12_RS18965	COG0719	Fe-S assembly protein
D9C12_RS18970	COG0822	iron-sulfur transferase activity
D9C12_RS18975	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
D9C12_RS18980	COG0719	Fe-S assembly protein
D9C12_RS18985	COG0396	ATPase activity
D9C12_RS19000	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D9C12_RS19005	COG1464	Belongs to the NlpA lipoprotein family
D9C12_RS19010	COG2011	ABC-type metal ion transport system permease component
D9C12_RS19015	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
D9C12_RS19025	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9C12_RS19030	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
D9C12_RS19040	COG0509	glycine decarboxylation via glycine cleavage system
D9C12_RS19045	COG1393	Belongs to the ArsC family
D9C12_RS19050	COG1960	acyl-CoA dehydrogenase activity
D9C12_RS19055	COG0183	Belongs to the thiolase family
D9C12_RS19060	COG1250	3-hydroxyacyl-CoA dehydrogenase
D9C12_RS19060	COG1024	Enoyl-CoA hydratase
D9C12_RS19070	COG0506	proline dehydrogenase activity
D9C12_RS19080	COG5577	PFAM Coat F domain
D9C12_RS19085	COG1846	Transcriptional regulator
D9C12_RS19090	COG0477	Major facilitator Superfamily
D9C12_RS19095	COG1942	4-Oxalocrotonate Tautomerase
D9C12_RS19100	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS19105	COG0583	DNA-binding transcription factor activity
D9C12_RS19115	COG1120	ATPase activity
D9C12_RS19135	COG1131	(ABC) transporter
D9C12_RS19185	COG0783	Belongs to the Dps family
D9C12_RS19195	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9C12_RS19200	COG0745	RESPONSE REGULATOR receiver
D9C12_RS19205	COG2205	protein histidine kinase activity
D9C12_RS19205	COG2770	Histidine kinase
D9C12_RS19215	COG1309	transcriptional regulator
D9C12_RS19220	COG0114	fumarate hydratase activity
D9C12_RS19230	COG0697	spore germination
D9C12_RS19235	COG0814	amino acid
D9C12_RS19245	COG2197	response regulator
D9C12_RS19250	COG4585	Histidine kinase
D9C12_RS19255	COG4758	membrane
D9C12_RS19260	COG3595	metallopeptidase activity
D9C12_RS19265	COG1842	Phage shock protein A
D9C12_RS19270	COG4758	membrane
D9C12_RS19275	COG2814	Major facilitator Superfamily
D9C12_RS19280	COG2096	Adenosyltransferase
D9C12_RS19285	COG1120	ATPase activity
D9C12_RS19295	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9C12_RS19300	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS19305	COG3386	PFAM SMP-30 Gluconolaconase
D9C12_RS19310	COG2205	protein histidine kinase activity
D9C12_RS19315	COG0745	RESPONSE REGULATOR receiver
D9C12_RS19325	COG1191	sigma factor activity
D9C12_RS19335	COG2140	Oxalate decarboxylase
D9C12_RS19345	COG0577	efflux transmembrane transporter activity
D9C12_RS19350	COG1136	(ABC) transporter
D9C12_RS19355	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9C12_RS19360	COG1120	ATPase activity
D9C12_RS19370	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9C12_RS19375	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9C12_RS19385	COG0531	amino acid
D9C12_RS19400	COG1988	membrane-bound metal-dependent
D9C12_RS19405	COG1368	sulfuric ester hydrolase activity
D9C12_RS19410	COG1910	domain protein
D9C12_RS19415	COG0725	ABC transporter, periplasmic molybdate-binding protein
D9C12_RS19420	COG4149	molybdate abc transporter
D9C12_RS19425	COG0656	L-ascorbic acid biosynthetic process
D9C12_RS19435	COG0025	NhaP-type Na H and K H
D9C12_RS19440	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D9C12_RS19445	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
D9C12_RS19450	COG3973	AAA domain
D9C12_RS19460	COG2860	membrane
D9C12_RS19465	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
D9C12_RS19470	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D9C12_RS19475	COG2217	Heavy metal translocating P-type atpase
D9C12_RS19485	COG2217	Heavy metal translocating P-type atpase
D9C12_RS19490	COG2608	mercury ion transmembrane transporter activity
D9C12_RS19495	COG1937	Protein conserved in bacteria
D9C12_RS19500	COG0673	inositol 2-dehydrogenase activity
D9C12_RS19510	COG1289	transmembrane transporter activity
D9C12_RS19520	COG2076	Multidrug Resistance protein
D9C12_RS19525	COG1309	transcriptional regulator
D9C12_RS19530	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS19540	COG5444	nuclease activity
D9C12_RS19555	COG5632	N-Acetylmuramoyl-L-alanine amidase
D9C12_RS19555	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS19560	COG4824	toxin secretion phage lysis holin
D9C12_RS19585	COG1705	Flagellar rod assembly protein muramidase FlgJ
D9C12_RS19585	COG3942	CHAP domain
D9C12_RS19700	COG0582	viral genome integration into host DNA
D9C12_RS19810	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
D9C12_RS19815	COG0557	exoribonuclease II activity
D9C12_RS19820	COG1647	Serine aminopeptidase, S33
D9C12_RS19825	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D9C12_RS19830	COG0596	Alpha beta hydrolase
D9C12_RS19835	COG1476	TRANSCRIPTIONal
D9C12_RS19840	COG1396	sequence-specific DNA binding
D9C12_RS19845	COG1396	sequence-specific DNA binding
D9C12_RS19850	COG1733	regulation of RNA biosynthetic process
D9C12_RS19855	COG0840	transmembrane signaling receptor activity
D9C12_RS19865	COG1174	glycine betaine transport
D9C12_RS19870	COG1732	Glycine betaine
D9C12_RS19875	COG1174	glycine betaine transport
D9C12_RS19880	COG1125	glycine betaine transport
D9C12_RS19880	COG0517	IMP dehydrogenase activity
D9C12_RS19885	COG1510	regulation of RNA biosynthetic process
D9C12_RS19890	COG1174	glycine betaine transport
D9C12_RS19895	COG1732	Glycine betaine
D9C12_RS19900	COG1174	glycine betaine transport
D9C12_RS19905	COG0517	IMP dehydrogenase activity
D9C12_RS19905	COG1125	glycine betaine transport
D9C12_RS19910	COG1510	regulation of RNA biosynthetic process
D9C12_RS19915	COG2095	MarC family integral membrane protein
D9C12_RS19925	COG3064	Membrane
D9C12_RS19930	COG4640	response to antibiotic
D9C12_RS19935	COG0456	acetyltransferase
D9C12_RS19940	COG0148	phosphopyruvate hydratase activity
D9C12_RS19945	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
D9C12_RS19950	COG0149	triose-phosphate isomerase activity
D9C12_RS19955	COG0126	phosphoglycerate kinase activity
D9C12_RS19960	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D9C12_RS19965	COG2390	Transcriptional regulator
D9C12_RS19975	COG1609	Transcriptional regulator
D9C12_RS19980	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D9C12_RS19990	COG0583	DNA-binding transcription factor activity
D9C12_RS19995	COG0697	spore germination
D9C12_RS20000	COG1113	amino acid transport
D9C12_RS20010	COG1556	Lactate utilization protein
D9C12_RS20015	COG1139	Iron-sulfur cluster binding protein
D9C12_RS20020	COG0247	lactate metabolic process
D9C12_RS20035	COG2197	response regulator
D9C12_RS20040	COG4585	Histidine kinase
D9C12_RS20045	COG0842	Transport permease protein
D9C12_RS20050	COG1131	(ABC) transporter
D9C12_RS20055	COG0596	Alpha beta hydrolase
D9C12_RS20060	COG2208	phosphoserine phosphatase activity
D9C12_RS20065	COG3867	Arabinogalactan endo-beta-1,4-galactanase
D9C12_RS20070	COG1874	Beta-galactosidase
D9C12_RS20075	COG3833	ABC-type maltose transport systems, permease component
D9C12_RS20080	COG1175	transmembrane transport
D9C12_RS20085	COG2182	Extracellular solute-binding protein
D9C12_RS20090	COG1609	Transcriptional regulator
D9C12_RS20095	COG2186	Transcriptional regulator
D9C12_RS20100	COG1620	l-lactate permease
D9C12_RS20115	COG5039	Polysaccharide pyruvyl transferase
D9C12_RS20120	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
D9C12_RS20125	COG0110	maltose O-acetyltransferase activity
D9C12_RS20130	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
D9C12_RS20135	COG2244	polysaccharide biosynthetic process
D9C12_RS20140	COG1216	Glycosyl transferase, family 2
D9C12_RS20145	COG5039	Polysaccharide pyruvyl transferase
D9C12_RS20150	COG1216	Glycosyl transferase, family 2
D9C12_RS20160	COG0438	transferase activity, transferring glycosyl groups
D9C12_RS20165	COG1215	transferase activity, transferring glycosyl groups
D9C12_RS20170	COG0438	transferase activity, transferring glycosyl groups
D9C12_RS20175	COG1086	Polysaccharide biosynthesis protein
D9C12_RS20180	COG0489	protein tyrosine kinase activity
D9C12_RS20185	COG3944	biosynthesis protein
D9C12_RS20190	COG1396	sequence-specific DNA binding
D9C12_RS20195	COG2272	Belongs to the type-B carboxylesterase lipase family
D9C12_RS20205	COG3479	Phenolic acid decarboxylase
D9C12_RS20230	COG1621	beta-fructofuranosidase activity
D9C12_RS20235	COG1621	beta-fructofuranosidase activity
D9C12_RS20240	COG0531	amino acid
D9C12_RS20245	COG1309	transcriptional regulator
D9C12_RS20250	COG2076	Multidrug Resistance protein
D9C12_RS20255	COG2076	Multidrug Resistance protein
D9C12_RS20270	COG0740	serine-type endopeptidase activity
D9C12_RS20275	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D9C12_RS20280	COG0366	Alpha amylase catalytic
D9C12_RS20285	COG1554	hydrolase, family 65, central catalytic
D9C12_RS20290	COG5521	maltodextrose utilization protein MalA
D9C12_RS20295	COG3833	ABC-type maltose transport systems, permease component
D9C12_RS20300	COG1175	transmembrane transport
D9C12_RS20305	COG2182	Extracellular solute-binding protein
D9C12_RS20310	COG0366	Alpha amylase catalytic
D9C12_RS20315	COG1609	Transcriptional regulator
D9C12_RS20320	COG1611	Belongs to the LOG family
D9C12_RS20325	COG1694	Mazg nucleotide pyrophosphohydrolase
D9C12_RS20330	COG0659	secondary active sulfate transmembrane transporter activity
D9C12_RS20335	COG0288	reversible hydration of carbon dioxide
D9C12_RS20340	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
D9C12_RS20345	COG0577	efflux transmembrane transporter activity
D9C12_RS20350	COG1136	(ABC) transporter
D9C12_RS20355	COG5002	protein histidine kinase activity
D9C12_RS20360	COG0745	RESPONSE REGULATOR receiver
D9C12_RS20370	COG2162	N-hydroxyarylamine O-acetyltransferase activity
D9C12_RS20375	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9C12_RS20380	COG1481	regulation of sporulation
D9C12_RS20385	COG0391	Required for morphogenesis under gluconeogenic growth conditions
D9C12_RS20390	COG1660	Displays ATPase and GTPase activities
D9C12_RS20395	COG1051	belongs to the nudix hydrolase family
D9C12_RS20400	COG0492	ferredoxin-NADP+ reductase activity
D9C12_RS20405	COG3883	PFAM NLP P60 protein
D9C12_RS20405	COG0791	NLP P60 protein
D9C12_RS20410	COG0457	Tetratricopeptide repeat
D9C12_RS20415	COG1132	(ABC) transporter
D9C12_RS20435	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
D9C12_RS20435	COG0140	phosphoribosyl-ATP diphosphatase activity
D9C12_RS20440	COG0107	imidazoleglycerol-phosphate synthase activity
D9C12_RS20445	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
D9C12_RS20450	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
D9C12_RS20455	COG0131	Imidazoleglycerol-phosphate dehydratase
D9C12_RS20460	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
D9C12_RS20465	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
D9C12_RS20470	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
D9C12_RS20475	COG4990	cell redox homeostasis
D9C12_RS20480	COG5297	Belongs to the glycosyl hydrolase family 6
D9C12_RS20490	COG0110	maltose O-acetyltransferase activity
D9C12_RS20495	COG0546	phosphoglycolate phosphatase activity
D9C12_RS20500	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
D9C12_RS20505	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
D9C12_RS20510	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
D9C12_RS20515	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
D9C12_RS20520	COG0363	glucosamine-6-phosphate deaminase activity
D9C12_RS20525	COG2188	Transcriptional regulator
D9C12_RS20530	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
D9C12_RS20545	COG1950	PFAM Membrane protein of
D9C12_RS20550	COG1983	PspC domain protein
D9C12_RS20555	COG3595	metallopeptidase activity
D9C12_RS20570	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D9C12_RS20575	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
D9C12_RS20580	COG0556	nucleotide-excision repair
D9C12_RS20585	COG4897	Protein conserved in bacteria
D9C12_RS20590	COG3848	Pyruvate phosphate dikinase
D9C12_RS20590	COG0574	Belongs to the PEP-utilizing enzyme family
D9C12_RS20595	COG1309	transcriptional regulator
D9C12_RS20600	COG2814	Major facilitator Superfamily
D9C12_RS20605	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9C12_RS20615	COG0793	Belongs to the peptidase S41A family
D9C12_RS20615	COG3409	Peptidoglycan-binding domain 1 protein
D9C12_RS20620	COG2177	Part of the ABC transporter FtsEX involved in
D9C12_RS20625	COG2884	Cell division ATP-binding protein ftsE
D9C12_RS20630	COG2010	Cytochrome c
D9C12_RS20635	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9C12_RS20645	COG0653	protein targeting
D9C12_RS20655	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D9C12_RS20670	COG1516	flagellar protein fliS
D9C12_RS20675	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
D9C12_RS20680	COG1334	flagellar protein FlaG
D9C12_RS20685	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D9C12_RS20690	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
D9C12_RS20695	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
D9C12_RS20705	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D9C12_RS20710	COG1256	bacterial-type flagellum assembly
D9C12_RS20710	COG4786	Flagellar basal body rod
D9C12_RS20715	COG3418	PFAM FlgN family protein
D9C12_RS20720	COG2747	anti-sigma28 factor FlgM
D9C12_RS20730	COG1040	competence protein
D9C12_RS20740	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
D9C12_RS20745	COG1307	EDD domain protein, DegV family
D9C12_RS20750	COG2197	response regulator
D9C12_RS20755	COG4585	Histidine kinase
D9C12_RS20760	COG1739	Uncharacterized protein family UPF0029
D9C12_RS20765	COG1316	TRANSCRIPTIONal
D9C12_RS20800	COG1131	(ABC) transporter
D9C12_RS20810	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
D9C12_RS20815	COG0438	transferase activity, transferring glycosyl groups
D9C12_RS20820	COG1215	transferase activity, transferring glycosyl groups
D9C12_RS20825	COG3206	protein involved in exopolysaccharide biosynthesis
D9C12_RS20830	COG3307	-O-antigen
D9C12_RS20840	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
D9C12_RS20845	COG0438	transferase activity, transferring glycosyl groups
D9C12_RS20845	COG0297	glycogen (starch) synthase activity
D9C12_RS20850	COG2244	polysaccharide biosynthetic process
D9C12_RS20865	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
D9C12_RS20870	COG1210	Utp--glucose-1-phosphate uridylyltransferase
D9C12_RS20880	COG1134	teichoic acid transport
D9C12_RS20885	COG1682	transport, permease protein
D9C12_RS20900	COG0463	Glycosyl transferase, family 2
D9C12_RS20900	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
D9C12_RS20905	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
D9C12_RS20910	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
D9C12_RS20915	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
D9C12_RS20920	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
D9C12_RS20925	COG4193	domain, Protein
D9C12_RS20930	COG1482	cell wall glycoprotein biosynthetic process
D9C12_RS20955	COG1316	TRANSCRIPTIONal
D9C12_RS20960	COG0561	phosphatase activity
D9C12_RS20965	COG0791	NLP P60 protein
D9C12_RS20980	COG2843	Capsule synthesis protein
D9C12_RS20990	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
D9C12_RS21010	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9C12_RS21015	COG1869	D-ribose catabolic process
D9C12_RS21020	COG1129	ABC transporter
D9C12_RS21025	COG1172	Belongs to the binding-protein-dependent transport system permease family
D9C12_RS21030	COG1879	ABC-type sugar transport system periplasmic component
D9C12_RS21035	COG3103	Sh3 type 3 domain protein
D9C12_RS21045	COG2249	NAD(P)H dehydrogenase (quinone) activity
D9C12_RS21050	COG3527	Alpha-acetolactate decarboxylase
D9C12_RS21055	COG0028	Belongs to the TPP enzyme family
D9C12_RS21060	COG0583	DNA-binding transcription factor activity
D9C12_RS21080	COG5337	Spore coat protein CotH
D9C12_RS21090	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D9C12_RS21100	COG0405	Gamma-glutamyltransferase
D9C12_RS21105	COG1522	sequence-specific DNA binding
D9C12_RS21110	COG2059	Chromate
D9C12_RS21115	COG2059	Chromate
D9C12_RS21125	COG0655	NAD(P)H dehydrogenase (quinone) activity
D9C12_RS21130	COG0583	DNA-binding transcription factor activity
D9C12_RS21160	COG5444	nuclease activity
D9C12_RS21180	COG3878	Protein conserved in bacteria
D9C12_RS21185	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
D9C12_RS21190	COG4464	protein tyrosine phosphatase activity
D9C12_RS21195	COG0489	protein tyrosine kinase activity
D9C12_RS21200	COG3944	biosynthesis protein
D9C12_RS21210	COG4715	Zinc finger, swim domain protein
D9C12_RS21215	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
D9C12_RS21225	COG0561	phosphatase activity
D9C12_RS21230	COG1349	DNA-binding transcription factor activity
D9C12_RS21235	COG0629	single-stranded DNA binding
D9C12_RS21250	COG3764	Sortase (surface protein transpeptidase)
D9C12_RS21255	COG2972	Histidine kinase
D9C12_RS21255	COG0745	RESPONSE REGULATOR receiver
D9C12_RS21260	COG1970	mechanosensitive ion channel activity
D9C12_RS21265	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
D9C12_RS21270	COG0457	Tetratricopeptide repeat
D9C12_RS21275	COG4786	Flagellar basal body rod
D9C12_RS21280	COG4786	Flagellar basal body rod
D9C12_RS21285	COG1077	Cell shape determining protein MreB Mrl
D9C12_RS21290	COG1609	Transcriptional regulator
D9C12_RS21300	COG1846	Transcriptional regulator
D9C12_RS21305	COG2814	Major facilitator Superfamily
D9C12_RS21310	COG3420	alginic acid biosynthetic process
D9C12_RS21315	COG1953	Uracil, thiamine, allantoin
D9C12_RS21320	COG0477	Major facilitator Superfamily
D9C12_RS21325	COG1335	isochorismatase
D9C12_RS21335	COG0004	ammonium transporteR
D9C12_RS21340	COG0347	Belongs to the P(II) protein family
D9C12_RS21345	COG0671	phosphoesterase, PA-phosphatase related
D9C12_RS21355	COG0739	heme binding
D9C12_RS21360	COG1247	-acetyltransferase
D9C12_RS21370	COG2089	acid synthase
D9C12_RS21380	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D9C12_RS21385	COG0789	Transcriptional regulator
D9C12_RS21400	COG1959	2 iron, 2 sulfur cluster binding
D9C12_RS21405	COG0804	urea catabolic process
D9C12_RS21410	COG0832	Belongs to the urease beta subunit family
D9C12_RS21415	COG0831	urea catabolic process
D9C12_RS21430	COG3237	CsbD-like
D9C12_RS21435	COG1994	Peptidase M50
D9C12_RS21440	COG0457	Tetratricopeptide repeat
D9C12_RS21450	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
D9C12_RS21455	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
D9C12_RS21465	COG2304	oxidoreductase activity
D9C12_RS21475	COG2304	oxidoreductase activity
D9C12_RS21480	COG2385	sporulation resulting in formation of a cellular spore
D9C12_RS21485	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
D9C12_RS21495	COG4836	Membrane
D9C12_RS21505	COG0355	proton-transporting ATP synthase activity, rotational mechanism
D9C12_RS21510	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
D9C12_RS21515	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
D9C12_RS21520	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
D9C12_RS21525	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
D9C12_RS21530	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
D9C12_RS21540	COG0356	it plays a direct role in the translocation of protons across the membrane
D9C12_RS21550	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
D9C12_RS21555	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
D9C12_RS21560	COG4475	Protein of unknown function (DUF436)
D9C12_RS21565	COG0698	ribose 5-phosphate isomerase
D9C12_RS21570	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
D9C12_RS21575	COG1971	Probably functions as a manganese efflux pump
D9C12_RS21580	COG0009	L-threonylcarbamoyladenylate synthase
D9C12_RS21585	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
D9C12_RS21605	COG2890	protein-(glutamine-N5) methyltransferase activity
D9C12_RS21610	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
D9C12_RS21615	COG0346	lactoylglutathione lyase activity
D9C12_RS21620	COG0789	Transcriptional regulator
D9C12_RS21625	COG0679	Auxin Efflux Carrier
D9C12_RS21630	COG0281	malic enzyme
D9C12_RS21635	COG1435	thymidine kinase activity
D9C12_RS21645	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
D9C12_RS21655	COG1494	fructose-1,6-bisphosphatase
D9C12_RS21665	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D9C12_RS21670	COG0191	fructose-bisphosphate aldolase activity
D9C12_RS21675	COG2204	response regulator
D9C12_RS21680	COG4821	SIS domain
D9C12_RS21690	COG0504	CTP synthase activity
D9C12_RS21695	COG3343	RNA polymerase activity
D9C12_RS21700	COG1960	acyl-CoA dehydrogenase activity
D9C12_RS21705	COG2181	nitrate reductase activity
D9C12_RS21705	COG0247	lactate metabolic process
D9C12_RS21710	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D9C12_RS21715	COG4294	response to UV
D9C12_RS21730	COG0018	arginyl-trna synthetase
D9C12_RS21735	COG4506	Protein conserved in bacteria
D9C12_RS21750	COG0535	radical SAM domain protein
D9C12_RS21760	COG1131	(ABC) transporter
D9C12_RS21765	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
D9C12_RS21770	COG0612	Peptidase, M16
D9C12_RS21775	COG0612	Peptidase, M16
D9C12_RS21785	COG3391	amine dehydrogenase activity
D9C12_RS21800	COG0457	Tetratricopeptide repeat
D9C12_RS21815	COG0010	Belongs to the arginase family
D9C12_RS21820	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
D9C12_RS21825	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D9C12_RS21840	COG1994	Peptidase M50
D9C12_RS21845	COG1942	4-Oxalocrotonate Tautomerase
D9C12_RS21850	COG1846	Transcriptional regulator
D9C12_RS21855	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
D9C12_RS21865	COG0477	Major facilitator Superfamily
D9C12_RS21870	COG1959	2 iron, 2 sulfur cluster binding
D9C12_RS21875	COG3465	dGTPase activity
D9C12_RS21880	COG1078	dGTPase activity
D9C12_RS21885	COG4844	belongs to the
D9C12_RS21895	COG0697	spore germination
D9C12_RS21900	COG0095	Lipoate-protein ligase
D9C12_RS21905	COG0583	DNA-binding transcription factor activity
D9C12_RS21910	COG0280	phosphate acetyltransferase
D9C12_RS21915	COG3253	May function as heme-dependent peroxidase
D9C12_RS21920	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS21925	COG0436	Aminotransferase
D9C12_RS21930	COG2814	Major facilitator Superfamily
D9C12_RS21935	COG0151	Belongs to the GarS family
D9C12_RS21940	COG1028	Short-chain dehydrogenase reductase Sdr
D9C12_RS21945	COG1917	Cupin 2, conserved barrel domain protein
D9C12_RS21950	COG0077	Prephenate dehydratase
D9C12_RS21960	COG2814	Major facilitator Superfamily
D9C12_RS21965	COG0833	amino acid
D9C12_RS21970	COG4187	Peptidase family M20/M25/M40
D9C12_RS21975	COG1012	belongs to the aldehyde dehydrogenase family
D9C12_RS21980	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D9C12_RS21990	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
D9C12_RS21995	COG1091	dTDP-4-dehydrorhamnose reductase activity
D9C12_RS22000	COG1088	dTDP-glucose 4,6-dehydratase activity
D9C12_RS22005	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
D9C12_RS22010	COG3980	spore coat polysaccharide biosynthesis protein
D9C12_RS22015	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
D9C12_RS22020	COG2089	acid synthase
D9C12_RS22025	COG0456	acetyltransferase
D9C12_RS22030	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
D9C12_RS22035	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
D9C12_RS22040	COG0463	Glycosyl transferase, family 2
D9C12_RS22055	COG2363	Small membrane protein
D9C12_RS22060	COG2233	PERMEase
D9C12_RS22070	COG1012	belongs to the aldehyde dehydrogenase family
D9C12_RS22075	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
D9C12_RS22080	COG1216	Glycosyl transferase, family 2
D9C12_RS22085	COG0351	phosphomethylpyrimidine kinase
D9C12_RS22105	COG1621	beta-fructofuranosidase activity
D9C12_RS22110	COG1263	PTS System
D9C12_RS22110	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9C12_RS22115	COG2116	formate transmembrane transporter activity
D9C12_RS22120	COG3711	transcriptional antiterminator
D9C12_RS22130	COG1404	Belongs to the peptidase S8 family
D9C12_RS22135	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D9C12_RS22140	COG0778	Nitroreductase
D9C12_RS22145	COG0772	Belongs to the SEDS family
D9C12_RS22160	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
D9C12_RS22165	COG1845	cytochrome c oxidase, subunit III
D9C12_RS22170	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
D9C12_RS22175	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
D9C12_RS22180	COG2261	transglycosylase associated protein
D9C12_RS22185	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
D9C12_RS22190	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
D9C12_RS22195	COG2246	polysaccharide biosynthetic process
D9C12_RS22200	COG1309	transcriptional regulator
D9C12_RS22210	COG3162	membrane
D9C12_RS22215	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9C12_RS22220	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
D9C12_RS22225	COG2837	iron assimilation
D9C12_RS22230	COG2822	iron ion transport
D9C12_RS22235	COG0672	)-iron permease
D9C12_RS22240	COG0352	thiamine-phosphate diphosphorylase activity
D9C12_RS22245	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
D9C12_RS22250	COG0583	DNA-binding transcription factor activity
D9C12_RS22255	COG1380	Effector of murein hydrolase LrgA
D9C12_RS22260	COG1346	cytolysis
D9C12_RS22265	COG2814	Major facilitator Superfamily
D9C12_RS22270	COG4895	conserved protein (DUF2196)
D9C12_RS22275	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
D9C12_RS22280	COG0346	lactoylglutathione lyase activity
D9C12_RS22295	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9C12_RS22305	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9C12_RS22305	COG1263	PTS System
D9C12_RS22310	COG3711	transcriptional antiterminator
D9C12_RS22315	COG1442	glycosyl transferase family 8
D9C12_RS22320	COG5522	Integral membrane protein (intg_mem_TP0381)
D9C12_RS22325	COG1846	Transcriptional regulator
D9C12_RS22330	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
D9C12_RS22335	COG2234	aminopeptidase activity
D9C12_RS22345	COG2357	RelA SpoT domain protein
D9C12_RS22355	COG1575	Belongs to the MenA family. Type 1 subfamily
D9C12_RS22375	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9C12_RS22380	COG1696	Membrane protein involved in D-alanine export
D9C12_RS22385	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
D9C12_RS22390	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
D9C12_RS22400	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D9C12_RS22405	COG1486	melibiose metabolic process
D9C12_RS22410	COG1447	Phosphotransferase system cellobiose-specific component IIA
D9C12_RS22415	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9C12_RS22420	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9C12_RS22425	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9C12_RS22425	COG3711	transcriptional antiterminator
D9C12_RS22435	COG2094	Belongs to the DNA glycosylase MPG family
D9C12_RS22440	COG0753	catalase activity
D9C12_RS22445	COG2814	Major facilitator Superfamily
D9C12_RS22490	COG1191	sigma factor activity
D9C12_RS22555	COG3328	transposase activity
D9C12_RS22605	COG2002	toxin-antitoxin pair type II binding
D9C12_RS22625	COG1674	ftsk spoiiie
D9C12_RS22625	COG1196	nuclear chromosome segregation
D9C12_RS22685	COG3328	transposase activity
D9C12_RS22720	COG3209	COG3209 Rhs family protein
D9C12_RS22745	COG0457	Tetratricopeptide repeat
D9C12_RS22755	COG2003	Belongs to the UPF0758 family
D9C12_RS22805	COG3764	Sortase (surface protein transpeptidase)
D9C12_RS22860	COG4086	secreted protein
D9C12_RS22955	COG2805	Type II/IV secretion system protein
D9C12_RS23020	COG0653	protein targeting
D9C12_RS23140	COG0457	Tetratricopeptide repeat
D9C12_RS23205	COG0577	efflux transmembrane transporter activity
D9C12_RS23205	COG1136	(ABC) transporter
D9C12_RS23255	COG0457	Tetratricopeptide repeat
D9C12_RS23315	COG0457	Tetratricopeptide repeat